Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167946.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51223
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:2267 original size:26 final size:26
Alignment explanation
Indices: 2231--2283 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2221 GTTGACTTAG
*
2231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2257 GCATACAGAGTTCATTCTCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2283 G
1 G
2284 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10170 original size:26 final size:26
Alignment explanation
Indices: 10133--10185 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10123 GTTGACTTAG
*
10133 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
* *
10159 GCATACGGAGTTCATTACCAGTGTAA
1 GCATACGAAGTTCATTACCAGTCTAA
10185 G
1 G
10186 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:10745 original size:897 final size:890
Alignment explanation
Indices: 6600--10910 Score: 5881
Period size: 895 Copynumber: 4.8 Consensus size: 890
6590 GTTGACTTAG
* * *
6600 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGGTTGCGAGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACAG-ACCGAGGGTTGCGGGTGCACATGCTGGG
** * * * * *
6665 CAGGGGCATGAGCTGGTACCACATTTTTTTTTCGCCCGGGGCACCATCGCCGAAGCAACGTCGGA
65 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGA
* * *
6730 CAACCTGACC-AGCGGCATTGGGGTTCTGACGATAGGTGGGGCAGGGGGTGGTGTGCGCACATGA
129 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATTGG-GGGGC--GGGG-GGTGTGCGCACATGA
* *
6794 TGTGCAATGGGTGCTGGTGCTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
6858 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
6923 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCAG-ATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
6987 TTTGGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
384 TTT-GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
7052 AAAAAATTTTAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
447 AAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
7116 TCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
511 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
7181 AATGGCATTGGCATGGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTGTCGATCTAC
576 AATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** ** *
7246 GGCTTGCGCATCCCGTCTCTCTGGCCGGCACAGTGCCCTTCTGCCCGCTCATTTCGTCGGTTGGC
641 GGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGC
* ** *** * *
7311 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTATGGTAGCAGGATC
706 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCAGCAGCAAGATC
* *
7376 GGCAGCATGCAGGGGGGACCCGACCA-ATCCCCGACTTAGGCATCCTGCCCCTC-GGCCGACTGA
771 GGCAGCACGCAGGGGGGACCCGA-CAGATCCCCG-CTT-GGCATCCTGCCCCTCTGGCCGGCTGA
* *
7439 GCGCCTGCACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
833 GCGCC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
7498 GCATATGGAGTTCATTCCCAATGGAAGACCGAACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * * *
7563 CTCAGGAATGTGCTGGTGCCGCATTTTTTTTCACTCGGAGCACCATCGCCAGAGCATCACTGGAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGAG
* * *
7628 AACCTGACCGACGGCATTAGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCACACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGCGCACATGATGTGC
** *
7693 GATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
7758 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
7823 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
7888 GCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAATCCTTCTGAAAAAA
389 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * ** * *
7953 TTTTAAAAAATTTTTGAACCGTAAAAGGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
453 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
8018 GCCATGAAACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
8083 TTGGCATTGCAGAAATATTAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 TTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
8148 GCATCCCGCCTCCCTGGTCGACGTAGTACCCGCCCGTCCGCTCGTTTCATTGGTTGGCTTAGGCA
648 GCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCA
* * * * * * * *
8213 TACAGAGTTAATTCCTAGTCTAAGATTAGACTGGAAC-AAGGGTTGCAGCAGCAATATTGGTAGC
713 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGG-ACGGAGGGTTGCAGCAGCAAGATCGGCAGC
* * **
8277 ATGCAGGGGGGTACCCGACCGATCCTTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
777 ACGCAGGGGGG-ACCCGACAGATCC-CCGCTTG-GCATCCTGCCCCTCTGGCCGGCTGAGCG-CC
* * *
8342 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
8395 GCATATC-GAGTTCATTCCCAGTGTAAGATTGGACCGAACCGAGAGTTGCGGGTGGACATGCTGG
1 GCATA-CGGAGTTCATTCCCAGTGTAAGATCGGACAG-ACCGAGGGTTGCGGGTGCACATGCTGG
* ** * * *
8459 GCTCGGGCATGTGCTGGTGTCGTATTTTTTTTGGCCTGGGG-----T------ACCATCGCCGGA
64 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGA
* * *** * *
8513 GAACCTAATCGGTAGCATTGAGGTTCCGACGATT-GGGGCCGGGGGGTGTGCGCACATGATGTGC
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* *
8577 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
8642 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
8707 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
8772 GCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAGACTCCTTCTGAAAAAAT
389 GCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
8837 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
8902 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
8967 TGGCATGGCAA-AAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 TGGCATGG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * **
9031 ACATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCA
648 GCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCA
* * * * * * *
9096 TACAGAGTTCATTCCTAGTCTAAGATCAAATCAGATGGAGGGTTGCAGTAGCAGGATCGGCAGCA
713 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCAGCAGCAAGATCGGCAGCA
9161 CGCAGGGGGGA-CC--C-G------GCTTGGGCATCCTGCCCCTCTGGCCGGCTGAGCGTCCGCA
778 CGCAGGGGGGACCCGACAGATCCCCGCTT-GGCATCCTGCCCCTCTGGCCGGCTGAGCG-CCGCA
*
9216 CGCTCATTTTGTGGGTTGACTTAGGCATA-GAGAGTTCATTCCCAGTCTAA
841 CGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * *
9266 GCATACGAAGTTCATTCCCAGTGTATGATCAGACCAGATCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGA-CAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * **
9331 GTCGGGCATGTGCTGGTGCCGA-ATTTTTTTTTCACCCGGGGCACCATCACCGGAGCATCGCCGG
65 CTCGGGCATGTGCTGGTGCC-ACA-TTTTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGG
* * *
9395 -GAACCTGACCGACGGTATTGGGGTTCCGATGATTGGGGGGCGGGGGGTGTGCACACATGATGTG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG
** *
9459 CGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
9524 ACCCCCTTACAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTCTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
9589 -GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
9653 TGCATGCCAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCTAAACTCCTTCTAAAAAAA
388 TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
9718 TTTTAAAAAAATCTTGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
9783 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATGGTTTGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
9848 TTGGCATGGAAGAAATATGAAGAAT-TGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
583 TTGGCATGGAAGAAATATGAAG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
9912 CGCATCCCGCCTCTCTGGTCGGTGTAGTGCCTGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGC
647 CGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGC
* * * * * * **
9977 ATATAGAGTTCATTCCCAATCTAAGATCGGACCGGACGGAGGGCTCCAGCAGCAAGATTGATAGC
712 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCAGCAGCAAGATCGGCAGC
* * * *
10042 ACGTAGGGGGGACCCGACAGATCCCCAGCTTGCGTATCCTGCCCCTCTGGCCGGTTGAGCACCAG
777 ACGCAGGGGGGACCCGACAGATCCCC-GCTTG-GCATCCTGCCCCTCTGGCCGGCTGAGCGCC-G
* * *
10107 CACACTCATTTTGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 CACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
10159 GCATACGGAGTTCATTACCAGTGTAAGATTGGACTAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGAC-AGACCGAGGGTTGCGGGTGCACATGCTGGG
** * *
10224 CTCGGGCATGTGCTGGTGCCACATTGTTTTTT-GCCTTGGGCACCAACGCCAAAGCATCGTCGGA
65 CTCGGGCATGTGCTGGTGCCACATT-TTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGA
* * * * *
10288 GAACCTGACCGACGGCATTGGGGTTCCAACGATTAAGGGGACGGGGGGGTGTGTGCACGTGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGC-GGGGGGTGTGCGCACATGATGT
* * * * *
10353 GTGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCACTCATCAATCCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
10418 CACCCCTTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
10483 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTGGAGTTTTTAGCTAAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
10548 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAA
387 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
10613 AATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTC
451 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
10678 TTGCCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAGATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
10743 CATTGGCATGGCAA-AAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCATGACT
581 CATTGGCATGG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * * * *
10807 TGCACATCCCGTCTCTCTAATTGACGTAGTGCCCACCTGCTCGCTCATTTCATCAGTTGGCTTAG
645 TGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAG
*
10872 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGAC
710 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
10911 TGAAGGTTAC
Statistics
Matches: 3013, Mismatches: 339, Indels: 123
0.87 0.10 0.04
Matches are distributed among these distances:
870 2 0.00
871 151 0.05
872 17 0.01
877 1 0.00
878 1 0.00
879 1 0.00
881 4 0.00
882 443 0.15
883 501 0.17
884 226 0.08
885 1 0.00
886 36 0.01
892 31 0.01
893 190 0.06
894 53 0.02
895 643 0.21
896 110 0.04
897 523 0.17
898 77 0.03
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACAGACCGAGGGTTGCGGGTGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
TAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCAGCAGCAAGATCGGCAGCACGC
AGGGGGGACCCGACAGATCCCCGCTTGGCATCCTGCCCCTCTGGCCGGCTGAGCGCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:16912 original size:26 final size:26
Alignment explanation
Indices: 16876--16928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16866 GGTTGACTTG
16876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16902 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16928 G
1 G
16929 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18524 original size:895 final size:893
Alignment explanation
Indices: 16804--34195 Score: 15715
Period size: 895 Copynumber: 19.5 Consensus size: 893
16794 GGGCCCCAGC
* *
16804 CGATCCCTGGCTTGCGCATCATGCCCCTCTGGCCGGCTGAGCGTCC-GCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG-CCTGCACGCTCGTTTCGTGGG
16868 TTGACTT-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * *
16932 AGACCGGACTAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGCGCTAGTGCCACATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * *
16997 TCGCCCGGGGCACCATCGCAGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
** * *
17062 ATTGGGTGGAAGA-GGGGGTGTGCGTGCATGATGTACGATGTGTGCTGGTACTTGGCCCTTATAT
260 ATTGGG-GG--GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
17126 TGGCCCCCTATCCGTCATCAAACCTTGAGAACTCAC-TCCCCTTAAAGAGCATTTGAGATTTTAC
322 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
17190 AGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAATGGGGACACTTTTTCCAAATGGTCACAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
17255 ATCCTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGTCAACAAAAATACAAGGATCAC
451 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
17320 GTCTACCAAATTTGGGGCCAAAAATCCTTCT-AAAAGAATTTTAAAAAAATCTTGAACCGTAAAA
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AATTTT-AAAAAATCCTGAACCGTAAAA
* *
17384 AGTATCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
579 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
17449 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
644 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* *
17514 GCC-ACAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGCCTCTCTGGCCGGCGTA
709 GCCTA-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * * * *
17578 GTGCCCGCCCGGCCGCTCGTTTCATCGGTTAGCTTAGGCATACGAAGTTCATTCCCAATCTAAGA
773 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** **
17643 TCAGACCAGACTGAGGGTTGCGGCAATAGGATCGGCAGCACGTAGGGGGGAGTCGA
838 TCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* * * *
17699 CATATCCCCGACTTGCGCATCCTGCCCCTCTGGTCAGCTGAGCGCCTGCACGCTCGTTTCGTGGG
1 C-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
*
17764 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* *
17829 GGATCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * ** *
17894 TTGCCCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACA
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
17959 ATTCGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 ATT-GGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
18024 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCTCTTAAAGAGCATTTGAGATTTTATAG
324 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
18089 GTTTGCTGCCAGTAGCCACTAAAGTTTCTGAAATGGGGACATTTTTTTCAAATGGACACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
18154 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTC
454 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
18219 TACCAAGTTTGGAG-TAAAACTCCTTCTGAAAAAATTTTAGAAAAATCCTAAACCGTAAAAAGTT
519 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA-AAAAATCCTGAACCGTAAAAAGTT
* *
18283 TTAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * ** * * *
18348 AACGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGTAGAAATATGAAGATGTTCTT
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
** *
18413 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
* * * *
18478 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTCGGCATACGGAGTTCATTCCCAGTCTAAGATCTGA
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
18543 TCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCACGTAGGGGGGGACCCGA
843 CCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTA-GGGGGGACCCGA
* * * * * * * *
18595 CCGATCACCGGCTTGTGCATCCTGGCCCTCTGGCCGACTGAGCACTTACACGCTCGTTTCATGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* *
18660 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * **
18725 GGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGTTGCATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * ** * *
18790 TTGCCCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCTGACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
18855 ATTGGGGGG-C-------CGCGCACATGATGTGCGATGGGTGCTGCTACTAGGCCCTTATATTAG
260 ATTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
18912 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTATAGG
325 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
** * *
18977 TTTGCTGCCAGTAGTTATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATCGTCACAAAATCC
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* *
19042 TATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * **
19107 ACCAAGTGTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATTTTAAAAAAATCTCGAATA
520 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAA---T-------CCT-GAACC
19172 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
573 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
19237 GGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGGCAGAAATATGA
638 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
* * *
19301 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGCCTCTTTGGCCG
703 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * * *
19366 GCGTAATGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
768 GCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * ** ** *
19431 TAAGATTGGACCGGACCAAGGGTTACGATAGCAGGATTGGCAGCACGTAGGGGGGACCCGA
833 TAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* * * * * * *
19492 TTGATCCCTGGCATGCGCATCCTGCCCTTCTGGCCGGCTGAACGCCTACACGCTCGTTTCGTTGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
*
19557 TTGAC-T-----T----AG----------G-C--A-C--ACGGAGTTCATTCCTAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * * * *
19596 GGACCGGACCGAGGGTTGAAGGTACACAAGCTAGGC-TCGAGCATGTGCTGGTGCCGTA-TTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCGCATTTTTT
* * * * * * *
19659 TTCTCTCGGGGCACCAT---C---G---C--CGGAGAACCTGATCGACGACTTTAGGGTTCTGAC
194 TTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
19713 GATTGGAGGGG-CGGGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
259 GATTGG-GGGGAC---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
19777 ATTGGCCCCCTAACCCTCATCAAACCTTCACAACTCACACCCTCTTAAAGAGGATTTGAGATTTT
320 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
19842 ACAGGTTTGCTGCGAGTAGCC-----A-T-TC----------A-A-------C--A-GGTCACAA
385 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
19879 AATCCTGTACACTTCAAATTTTTAGCTGAATTTTTATGTGCATGCCAACAAAAATACAAGGATCA
450 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
19944 TGTCCACCAAGTTTGGGGCCAGAAA-TCATTCTGAAAAAATTTTAAAAAAAATCCCGAACAGTAA
515 CGTCTACCAAGTTTGGGGCCA-AAACTCCTTCTGAAAAAATTTT--AAAAAATCCTGAACCGTAA
* * * * * *
20008 AAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTTCCATTAAACTTCACATGAAGGCT
577 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* * * *
20073 TAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGGCAAAAAAATGAAGAT
642 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * *
20138 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCAT
707 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* * * *
20203 AGTGCCCGCCCGCCCGTTTGTTTTGTCGATTGGCTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
772 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * ** ** * ** * *
20267 ATTGGA-TAGGACAAAGGGTTGTGATAGCAAGATCGATAGCACGTAGGGAGGACCTGA
837 ATCAGACCA-GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* *** * * *
20324 CCGATCCCCGACTTGTATATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* * * *
20389 TTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGGTC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * ** *
20454 GGATCAGACCGAGGGTTACGGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * * * **
20519 TCGGCTGGGGCACCATCGTCGGAGCATCG-CTGAAGAACCTGACCGGCGGCATTGGGGTTGTGAC
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
20583 GATTGGTGGGGGTCGGGGGGTGTGCGCACATGATGTGCGGTGGGTGGTGGTACTTGGCCCTTATA
259 GATT-G-GGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
20648 TTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCTCTTTAAAGAGCATTTGAGATGTTA
321 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
20713 CAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAACTGATCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
20778 ATCTTGTACACTTCAAGTTTCTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACATGGATCAC
451 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
20843 GTATACCAAGTTT-GGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAAAT-CTCGAACTGTAAAA
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCT-GAACCGTAAAA
** *
20905 AGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCATGAAGGCTTA
579 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
** * *
20970 AGGGACCATTGTATGAATTTTTAAGCCATAAAAATGGCATTGGCATGACAAAAATATGAAGATGT
644 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
21035 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG---C-CT------C----
709 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
*
21086 T-------------CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGAT
774 TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** *
21138 CAGACCAGACCGAGGGTTGTGGCAGTTGGATCGGCTGCACGTAGGGGGGACCCGA
839 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* * * * * * **
21193 TCAATCCCCGGCTTACGCATCCTACCCATCTGGCCGGCTAAGCGCCCGCACGCTTATTTCGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* * * *
21258 TTGACTTAGGCTTACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTGTAACATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
** * ** *
21323 GGACCAGACCAAGGGTTGTGGGCGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * *
21387 TCCCCCGGGGCACCATCGTCGGAGCATTGTCGGAGAACCT-ACCGGCGGCATTGGGGTTCCGACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
21451 GTTGGGGGGGTA-GGGGGTGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
260 ATT-GGGGGG-ACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* ** *
21515 GGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
** *
21580 GGTTTTTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
21645 CCTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTACATGACAATAAAAATACAAGGATCACAT
453 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * **
21710 CTAACAAGTTTGGGGCAAAAAATCCTACTAAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGT
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCTGAACCGTAAAAAGT
* *
21775 TTCAAAAATCATGAAAAAAAGAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * * *
21840 GACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCG
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* * * *
21905 TAAACCCACTTACCACCCTATCGATCCACGACTTGCGCATCCCACCTCTCTGGCCGGCATAGTGC
712 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC
* * * * * **
21970 CCGCCCACCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATGATTGG
777 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
22035 A-CTGAACCAAGGGTTGTGGTAAG-AGGATCGACAGCACGTAGGGGGGACCCGA
842 ACCAG-ACCGAGGGTTGTGG-CAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* * * * * *
22087 TCGATCCCCGACTTGTGCATCTTGCCCCTCTGGCCGACTGAGCACCGGCACGCTCGTTTCGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* *
22152 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * *
22217 GGACCGGACCGAGGGTTGCAGGTGCACATGCTGGGC-TCGAGCATGTGCTGGTGCCACATTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCGCATTTTTT
* * * ** * *
22281 TTTGCCCGAGGCACCATCACCAAAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGAC
194 TTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
22346 GATT-GGGGGACGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
259 GATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * **
22410 GGCCCACTATCCCTCATCGAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
22475 GGTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
22540 CCTGTACACTTTGAGTTTTTAGTTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCATGT
453 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
22605 CTACCAAGTTTGGGGCCAAAAC-CCTTTCTGAAAAAATTTTAAAATAATCCCGAACTGTAAAAAG
518 CTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAA-AATCCTGAACCGTAAAAAG
* *
22669 TTT-AGAAAATCATGAAAAATAGAAAACAAGT-GTCTTGCCATTAAACTTCACATGAAGGCTTAA
581 TTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
* **
22732 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTG
645 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * *
22797 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGT
710 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * * * * *
22862 GCCCGTCCACCCGCTCTTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTGCCAATCTAAGATC
775 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
22927 AGACTAGACTGAGGGTTGTGACAGCAAGATCGGCAGCACGCAGGGGGGACCCGA
840 AGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
** * * ** * * *
22981 TCGATCCTTGGTGTTATGAAC-CAACCTTGTATAGGGCC-ATGACCAGGACTTTG-GTTGCCATG
1 -CGATCC-CCG-GCT-TG--CGCATCC-----T-GCCCCTCTGGCC-GG-C--TGAG-CGCC-T-
* * * * ** *
23043 AGCCACCCAT-GTATAGGGCCATGGCCGGGTAGATCCGTT-GTGC-TA-GGAAAAAT-ATCCCCA
47 -G-CACGC-TCGT-T-------TCG-TGGGTTGA--C-TTAG-GCATACGG--AGTTCATTCCCA
* * * * ** * * ** *
23103 -TTTCAAACAT-TGTAATGGTT-ACTGGTAGCATAGCTCTAAAATCTTTA--AGGCTCTTTAAGG
94 GTCT-AAGCATACG-GA--GTTCA-T--T--CCCAG-TGTAAGATC-GGACCAGAC-C---AA--
* * * * * * * * ******
23163 GGGATGAACCGATAGCGCAGTGTTGGG-TT-GTCTCACTGGTTGCT-ATGCGAGC-TTGAGCCAC
142 GGGTTG--CAGGT-GCACA-TGCTGGGCTTAG--GCA-T-G-TGCTGGTGC-CGCATTTTTTTTC
* ** * * * * * ** * **
23224 CCACCAATGACTGCCCCCTGGCCCTGGAG-ATGGTGGGAGGTCCCGATGTA-TGATTCCCGTTTA
197 GC-CC---G-GGGCACCATCG-CC-GGAGCATCGTCGGA-GAACC--TG-ACCGA----CG-GCA
***** * *** * ** ** * * ** ***
23287 TAATAAAACTCACCACGATT-GAATGTCTCGATTGTTGC-CTCGATG-TGTTTTTCTTTTTCTCG
246 T--TGGGGTTC-CGACGATTGGGGGGACGGGGGTG-TGCGCAC-ATGATG---TGCGATGGGT-G
* * * * ***** ** * *
23349 ATGCG-AATAT-GCCTTCTTGTGTGTGTGCTTGAGATTGATCTCGAT-ATATTATGTCTTATTGT
302 CTG-GTACT-TGGCC--CTTATAT-TG-GCCCCCTA-T-CCCTC-ATCA-A--A---C--CTTGA
* ** * * *
23411 GAATGCTTGGGACTAACCAGGGCTT-ATG-GTTATTTGTTCAGATATCGATCTATTGAAGGCTGA
350 GAA--C-T--CAC--ACC--CCCTTAAAGAG-CATTTG---AGAT-T---T-TA---CAGG-T--
* ** * * * ** * * * **
23474 CTTGGTTGGGAGCA-CACATTCAAGTG-CCG---TACGGTCTA-TTGCTTGTTGAGA--GAAAGC
391 -TT-GCTGCCAGTAGC-CATTAAAGTGTCTGAAATGGGGAC-ACTT--TT-TTCAAATGGTCA-C
** * * * * * * *** * * * * ** *
23531 TTAGTCC-GTGACACGT-G-G-TATCAG-AGCA--CGGTTGAGAAGTG-CTAGAAAAATGGATGA
448 AAAATCCTGT-ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAG-
* * * * * * * **
23588 GAT---GGCCA-CAA--ATGGTGGATC-GAA-T-CGTC--AACAGAGAA-TTGAGGAACTTGAGG
510 GATCACGTCTACCAAGTTTGG-GG-CCAAAACTCCTTCTGAA-A-A-AATTTTA--AA----AAA
* * * * * *
23641 TCGCAGTG-GCCATAATGAAAATTCATATGGCGACTAAAGACCGAGTGAGGGAGATCGAGACAAC
564 TC-C--TGAACCGT-A--AAAAGT--T-T--C-A--AAA-ATC-A-TGA--AAAAT--AGA-AA-
* * * * *
23705 CCAGCGGGAGTTGTCCGATACTCT-CCA-G-AACGTGA-GTGAAGAGGC-T-AGAGACACCTTG-
606 --A-C--GA---GT-CG-T-CT-TGCCATGAAACTTCACATG-A-AGGCTTAAGGGAC-CATTGT
* * * ** **
23763 A--ACATTCTCCAAAAGGTGAGCATTCTACAAATGGC-TGTGGCCAGATCGGGTTTGAGCTCGAT
656 ATGA-ATT-T--ACAA---G-CCA---TAAAAATGGCAT-TGG-C--AT--GG-CAGAAAT--AT
* *** ** * * * * ** *
23825 GGAA-A-GGGGAAAAAGGCCCAAGGTACCGAAGCC--TCGATGCTATAAGG---GGGCA--AGGG
701 -GAAGATGTGCCTAAA--CCC-ACCTACC--ACCCTATCGAT-C--CACGGCTTGCGCATCCCGC
* ** ** *** * * ** *** * * *** ** *
23881 ATGCTAAGGAACTTGAAAATTTCTTGTTTG-AC-AT-GGAGCAGTACTTTTGAGC-TA--TATAC
757 CT-CTCTGG--CCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC-GT-CGGTTG-GCTTAGGCATAC
** * ***** * * * *
23940 ACAAATTCAGAGGAAGAC-AAGGTGACAATGGCATCGATGTACCTCGCAGGG--GATGCCAAGCT
816 -GGAGTTCATTCCCAGTCTAAGAT--C-A--G-A-CCA-G-A-C-CG-AGGGTTG-TGGC-AGC-
* ** * *
24002 ATGG-TGGTGCTCCAAGTTTGTCGATGATGAGTG-CCCGA
865 A-GGATCG-GCAGCACG-TAG--G--G--G-G-GACCCGA
* * ** * * ** * * ** *
24040 TTGTTGACAGAAAGCTTAGTCCGTGACACCCGGCTTGTGCATCTTGCCCCTCTG-GCCGACTG-A
1 -CGATCCCCG---GCTT-G--C--G-CA-TC--C-TGCCCCTC-TGGCCGGCTGAG-CGCCTGCA
* * * * * * * *
24103 -GCGTCCG-TACGCTCGTTTCA-TGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCA
50 CGC-T-CGTTTCG-TGGGTTGACT---TAGGCATA--C----GGAGTTCATTCCCAGTCTAAGCA
* ** * * * * * * * *
24165 AATAGAGTTCATTGCCAGTGTAAGGTCAGACCGGACCAAGGG-TCCCGAGTGAACATGCTTGGCT
103 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCAG-GTGCACATGCTGGGCT
** * * ** **
24229 CGGGCATGTGCTGGTGCTGCATTTCTTTTTCGGCAAGGGCACCATCGTTGGAGCATCG-CTGGAG
167 TAGGCATGTGCTGGTGCCGCATTT-TTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTC-GGAG
* * * * * * * *
24293 AACCTGACC-AGCGACATTGGGATTCTGACGATT-GGGGG-CGGGGGGGTACGTAAATGATGTGA
230 AACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGACGGGGGTGTGCGCACATGATGTGC
** * * * **
24355 GATGGGCACTGATACTTGGCCTTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACA
294 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
24420 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTTAAAGTGTCTGAAAT
359 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAAT
24484 GGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACA-TTCGAGTTTTTAGCTGAATTTTTTTG
423 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
24547 TGCATGCCAACAAAAATACAAAGACCACGTCTACCAAGTTTGGGGCCAAAACT-CTATCTGAAAA
488 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAA
*
24611 AATTTTAAAAAA-----AACCCG----AA----C------C--GTAAAA-AGAAAACGAGTCGTC
552 AATTTTAAAAAATCCTGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
24654 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGG
616 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
24719 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
681 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * **
24784 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGATCGCCCGCTCCTTTCGTCATTTGGCTTAGG
746 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
24849 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGCAGCAAGATCGACAG
811 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAG
* * *
24914 CATGCAGAGGGTGACCCGA
876 CACGTAG-GGGGGACCCGA
* * * *
24933 CCTATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* ** **
24998 TTGACTTAGGCATACAGACATCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTGTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * *** * ** * * *
25063 AGATCAGATTGATGGTTATAGGTGCAAATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* *** ** * ** *
25128 TCGCTCGGGGCACCATCGTAAGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTTTGGCG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
25193 ATTGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATT
260 ATTGGGGGGAC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * *
25257 GGCCCCCTATCCCTTATCAAACCTTGGGAACTCACACCCCCTTAAAAAGCTTTTGAGATTTTATA
323 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
25322 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTCTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
25387 CCTATACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACA
453 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACG
* * * *
25452 TCTACCAAGTTT-AGGCCAAAAATCCTTCTAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAG
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCTGAACCGTAAAAAG
*
25516 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
581 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
25581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGACGTGC
646 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGC
* * * * * * * *
25646 CTAAACCCATCTACCACCCTATCGATCTACGGCTTGCGCATCTCGCCTCTCTAGTCAGTGTAGTT
711 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * *
25711 TCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCA
776 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
25776 GACCAGACTGAGGGTTGCGACAGTC-GGATCGGCAGCACGCAGGGGGGACCCGGT
841 GACCAGACCGAGGGTTGTGGCAG-CAGGATCGGCAGCACGTAGGGGGGACCC-GA
* * * * * *
25830 CGATCCCCGGCTTACGCATCCTACCCCTCTAGTCGGCTGAGCGCCTGTACGCTCGTTTCGTTGGT
1 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
* * ** * * *
25895 TGAGTTAGGCATACGGAGTTAATTCCCA-TCTAAGCATAAAGAGTTCATTCCCAGTGGAGGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * *
25959 GACC-GAACCAAGGGTTACAGGTGCACATGCTGGGCTCAGGCATTTGCTGGTGCCGCATTCTTTT
131 GACCAG-ACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * *
26023 TCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
26088 ATTGGGGGTTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
260 ATTGGGGG--GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
26153 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
26217 GGTTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGATAC-TTTTTCAAATGGTCACAAAA
388 GG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
26281 TCCTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATG
452 TCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
26346 CCTACCAAGTTTGGGGCCAAAACTCATTCT------A----AAAAAAT--T----C------A--
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
*
26387 ---AAAAATCATG--AAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * *
26447 GACCATTGTATG-ATTTACAAGCCATAAAAATGGCATTGGAATGGTAGAAATATGAAGATGTTCC
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* * * * *
26511 TAAACCCACCTACCACCCTATCGAT-CACGGCAATGCGCATCCTG-CTCTCTGGCCGACATAATG
712 TAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
* * * * * *
26574 CCCGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGCCATATGGAGTTCATTCGCAGTCTAAAATCA
776 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** ** * * *
26639 GACCAGACCAAGGGTTACGATAGTAGGATCGGTAGCACGTAGGGGGGGAACCTGA
841 GACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTA-GGGGGG-ACCCGA
* * * * * * *
26694 TCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGTTGAGCGCATGCACACTTGTTTTGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* *
26759 TTGACTTAGGCATACGGAGTTCATTCTCAGTGTAAG-AT-C-G-G---A----C----T--GA--
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * *
26805 --ACC--A--AA-GGTTACAGGTGCACATGCTAGGCTTAGGCATTTGCTGGTGCCGTATTGTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * * *
26863 TCGCTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
26928 ATTGGGGGG-CAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 ATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* ** * *
26992 GACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTATAG
324 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
27057 GTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCCACAAAAT
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAAAT
* * * * *
27122 CCTATACACTTCGGGTTTTTAGCTGAATTTTTTGGTACATGCCAA-AAAGAA-ACAAGGATCATG
453 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACG
* * * *
27185 TCTACCAAGTTTGGAGG-CGAAACCCGCTTCT---AAAATTTAAAAAAATCCTTGAACCTTAAAA
517 TCTACCAAGTTTGG-GGCCAAAACTC-CTTCTGAAAAAATTTTAAAAAATCC-TGAACCGTAAAA
* ** *
27246 AGTTTTGAAAAATTGTGAAATAATAG-AAACGAAGTCGTCTTGCCATAAAACTTCAGCATGAAGG
579 AG-TTTCAAAAATCATGAAA-AATAGAAAACG-AGTCGTCTTGCCATGAAACTTCA-CATGAA-G
* *
27310 GCTTAAAGGACCATTGTAATGAATTTTAC-AG-CATAAAAATGGAATTGGCATGGCAGTAAATAT
639 GCTTAAGGGACCATTGT-ATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGGCAG-AAATAT
* * *
27373 GAAGAATGTGGCCTAAACCCA-CTACGCA-CCTA-CGATCGCACGACTTGCACATCCCACCTCTC
701 GAAG-ATGT-GCCTAAACCCACCTAC-CACCCTATCGATC-CACGGCTTGCGCATCCCGCCTCTC
* * * * * *
27435 TTGTCCGGATGCAGTG-CCG-CCGCGCCGCTAGTTTCAATTCAGTTGGCTTAGGCATAGACGGAG
762 -TGGCCGG-CGTAGTGCCCGCCCGC-CCGCTCGTTTC--GTCGGTTGGCTTAGGCAT--ACGGAG
* * * * *
27498 TT-ATT-ACAGT-TAAGATTAGATCAGACCGAGTGTTGTGGCAAAGCAGGAGATCGGTAGGCACG
820 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC--AGCA-G-GATCGGCA-GCACG
* *
27560 CAGGGGGGACCCGGT
880 TAGGGGGGACCC-GA
* * * * * *
27575 CGATCCCC-GCTTACGCATCCTACCCCTCTAGTCGGCTGAGCGCCTGTACGCTCGTTTCGTTGGT
1 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
* * ** * * *
27639 TGAGTTAGGCATACGGAGTTAATTCCCA-TCTAAGCATAAAGAGTTCATTCCCAGTGGAGGATCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * *
27703 GACC-GAACCAAGGGTTACAGGTGCACATGCTGGGCTCAGGCATTTGCTGGTGCCGCATTCTTTT
131 GACCAG-ACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * *
27767 TCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
27832 ATTGGGGGTTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
260 ATTGGGGG--GACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
27897 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
27962 GGTTTGCTACCAGTAGCCATTAAAGTGTCTCAAATGGGGATACTTTTTTCAAATGGTCACAAAAT
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
28027 CCTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGC
453 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
28092 CTACCAAGTTTGGGGCCAAAACTCATTCT------A----AAAAAAT--T------T--CAA---
518 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
*
28134 --AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGG
583 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * *
28197 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGGTAGAAATATGAAGATGTTCCT
648 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * * * *
28262 AAACCCACCTACCACCCTATCGATCCACGGCATGCGCATCCTGCCTCTCTGGCCGACATAATGCC
713 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
* * * * * *
28327 CGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGCCATATGGAGTTCATTCGCAGTCTAAAATCAGA
778 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** ** * * *
28392 CCAGACCAAGGGTTACGATAGTAGGATCGGTAGCACGTAGGGGGGGAACCTGA
843 CCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTA-GGGGGG-ACCCGA
* * * * * * *
28445 TCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGTTGAGCGCATGCACACTTGTTTTGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* *
28510 TTGACTTAGGCATACGGAGTTCATTCTCAGTGTAAG-AT-C-G-G---A----C----T--GA--
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * *
28556 --ACC--A--AAGGGTTACAGGTGCACATGCT-AGCTTAGGCAT-TGCTGGTGCCGTATTGTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * * *
28613 TCGCTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
28678 ATTGGGGGG-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 ATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* ** * *
28742 GACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTATAG
324 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
28807 GTTTGCTGCTAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
28872 CTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
454 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
28937 TACCAAGTTTGGGGCCAAAACTGCTTTTGAAAAAATTTTATAACAATGCC-GAACCATAAAAAAT
519 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA-AAAAAT-CCTGAACCGTAAAAAGT
29001 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
582 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
29066 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCC
647 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
*
29131 TAAACCCACCTACCACACTATCGATCCACGGCTTGCGCA-CCCTGCCTCTCT----GGC---G-G
712 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-GCCTCTCTGGCCGGCGTAGTG
* ** * * * *
29187 ---G--C-ACTACACGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTA
776 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
29246 GATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGGAGGGTGGGACTCGA
841 GACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGG-GGGACCCGA
* * *
29300 CTGATCCCCGGCTTACGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 C-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* * * *
29365 TAGACTTAGGCATATGGAGTTCATTCCCTA-TCTAATCATACCGAGTTCATTCCCAGTGTAAGAT
65 TTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
*** * * * *
29429 CGGATTGGATCGAGGGTTGC-GGCTGCACATGCTGGGCTT-GGTCATTTGCTGGTGCTGCATTTT
129 CGGACCAGACCAAGGGTTGCAGG-TGCACATGCTGGGCTTAGG-CATGTGCTGGTGCCGCA-TTT
* * * * *
29492 TTTTTTGCCTGGGGCACAATCGTCGGAGCATCG-CGGGAGAACCTGACCGACGGAATTGGGGTTC
191 TTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTC
29556 CGACGATTGGGGGG-CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
255 CGACGATTGGGGGGAC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* ** * *
29620 ATATTAGCCCCCTATCCCTCATCAAACCTCAAGACCTCACACCCCCTTGAAGAGCATTTGAGATT
318 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
29685 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATGAGGACAC-TTTTTCGAATGGTCAC
383 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
29749 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAC
448 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
*
29814 CACG-CGCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTTTTAAAAAATCCTGAACCGT
513 CACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAA-TTTTAAAAAATCCTGAACCGT
** * *
29878 AAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
575 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
* *
29943 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGCAAAAATATGAAG
640 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * *
30008 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTTTGGCTGGC
705 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC
* * *
30073 ATAGTGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGCGTTCATTCCCAGTCTA
770 GTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * * * * * * *
30138 AAATCGGATCAGACTGAGGGTTGCAGCAGCAAGATTGGCAGTACGCA-AGGGGACCTGGC
835 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACC-CGA
** * * * *
30197 CGATCCTTGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTACGTGGGT
1 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
*
30262 TGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
* * * * * * *
30327 GACCGGACCAAGGGTTACGGGTGCACATGCTGAGCTTGGGCATGTCCTGGTGCCGTATTTTTTTT
131 GACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTTT
** * * ** *
30392 CGCTTGAGGCACCATCGCGGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGA
196 CGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * * *
30457 TTGGGGGGGCGGGGGGTGTACGCACATGATGTGCAATGGGTACTGGTACTTGGCCCCTATATTGG
261 TTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
**
30522 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
30587 TTTGCTGCAAGTAGCCATTATAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCC
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* * * *
30652 TGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCA
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
30717 ACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAGTCCCGAATCGTAAAAAGTTT
520 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA-TCCTGAACCGTAAAAAGTTT
** **
30782 TGAAAATCATGAAAAATAGAAAATTAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
584 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* *
30847 CCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
* * * * ** *
30912 AACCCACCTACCACCCTTTCGATCCACGGCTTGCGCATCTCGCCTATCTGGTCGATGTAGTGGCC
714 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCC
* * * * *
30977 GCCCGCCCGCTCATTTCGTTGGTTGTCTTAGGCATACGGATTTCATTCCCAGTCTAAGAT-TGAA
779 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * *
31041 CCAGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGCGGACCCGA
843 CCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
* *
31092 TCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCC-GC--A-CG-CT-CA------TTTCGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
*
31145 TTGACTTACGCATACGGAGTTCATTCCCA-T-T--G--TA---AG---A-T--C------AGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
** *
31189 GGACC-G----AGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * * * * * ***
31249 TCGCCTGGGGCAGCATCGTCTGAGCATCGCCAGAGAACCTGACTGACGGCATTGGGGTTTTAACG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* ** * *
31314 ATTGGGTGGGGCGAAAGGGGGTGTGCTTACATGATATGCGATGGGTGCTAGTACTTGGCCCTTAT
260 ATT--G-GGGG-G-ACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
**
31379 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
320 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
31444 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGAGACTTTTTTCAAATGGTCACAA
385 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
31509 AATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAA-AAAAATTACAAGGATC
450 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATC
* ** * ** * **
31573 ACTTCTAAAAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTAAAAAAAAACCCCAAACCGTAAA
514 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TTAAAAAATCCTGAACCGTAAA
* *
31638 AAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGCCTT
578 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
** *
31703 AAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCATGACAGAAATATGAAGATG
643 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* * * * *
31768 TGCCCAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGCCTCTCGGGTCGGCGTA
708 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * * * * * *
31833 CTGCCTGCCCGCCCGATCGTTTCGTCAGTTGGCTTTGGCATACGGAGTTCATTCCTAGTATAAGA
773 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
31898 TCAGACCAGACCAAGGGTTGTGGTAGCAGGATTGGCAGCACATAGGAGGGGACCTGGG
838 TCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGG-GGGGACC-CGA
* *
31956 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGGCC-GCACGCAT-GTTTCATGG
1 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC-GCCTGCACGC-TCGTTTCGTGG
**
32019 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTGTAAGAT
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
** * * * * * *
32084 CAAACCAGACCGAGGGTTACGGGTACACATGCTAGGC-TAGAGCATGTACTGGTGCCGCATTTTT
129 CGGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCGCATTTTT
** * * *
32148 TTTCGCTTGAGGCACCAT--------CA---TCGGAGAACCTGACCGACGGTAATGGGGTTCCGA
193 TTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
32202 CAATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
258 CGATTGGGGGGAC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
32267 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAA
322 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-A
*
32332 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAA
386 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
32397 ATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGAATTAC
451 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
32462 GTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAGATTTTTAAAAAAAT-CTCGAACAGTAC
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-A-TTTT-AAAAAATCCT-GAACCGTAA
** * *
32525 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
577 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
32590 TAAGGAACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAGAAATATGAAGAT
642 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * * ** ** **
32655 ATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAGCCTACCTCTC-GGTTGATGT
707 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* * * ** *
32719 AGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCGTAGTTTAAG
772 AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * ** *
32784 ATCAGACCAGATCGGGGGTTGTGATAGTAGGATCTACAGCATGTAGGGGGGTACCCGA
837 ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGG-ACCCGA
* * * * * * *
32842 CCGATCCCCGACTTGTGCATCCTGCCCATCTGGTCGGCTAAGCGCCCGCACGCTCGTTTTGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
* * * * * * * *
32907 TTGACTTAGGCATACGAAATTCATTCACATTCTAAGCATACAGAATTCATTCCTAGTTTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * ** * * * *
32972 GCACCAGACCGAGGGATGTGGGTGCATATGCTGGGCTCAAGCATGTGCAGGTGCCGCATTTTTTT
130 GGACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTT
* * * * * ** *
33037 TCGCCCGAGGCACCAT---C---G---C--CGGAGAACCTTACTGGCGACATTGGGGTTTTGATG
195 TCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
** * *
33091 ATTGGGGGTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCCTA
260 A-T-----TGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
33156 TATTAGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
319 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
33221 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCATA
384 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
33286 AAATCTTGTACA---C---TTTTTATCTAAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATC
449 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
33345 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT-CTCAAACTGTAA
514 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAATCCT-GAACCGTAA
*
33409 AAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
577 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* ** *
33474 TAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACAGCAAAAATATGAAGAT
642 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * *
33539 GTGCCTAAACCCA-CTACCACCCTATCGATCCACCGATTGCGCATCTCCGCCATCTCTGGCCGGT
707 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CCGCC-TCTCTGGCCGGC
* *
33603 GTAGTGCCTGCCC-CCCGCTCG-TTAG-C-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
770 GTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * ** * * **
33664 AAATCAGACTGGACCAAGGGTTGTGATAGTAGGATCGACAGCACACAGAGGGGGACCCGA
835 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAG-GGGGGACCCGA
* * * * * * *
33724 CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAAGCACCCGCATGCTCATTTTGTGGG
1 -CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGG
** * * *
33789 TTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATT
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
*** * * * * *
33854 GGATTGGACCGAAGGATGTG--GGTGCACATGCTGGGC-TCGAGCATATGCTGGAGCCACATTTT
130 GGACCAGACC-AAGGGT-TGCAGGTGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCGCATTTT
*** * * *
33916 TTCTTCGCCCGAAACACCATCGCCGGAGCATCGTCGGAGAACCTAATCGACGGCTTTGGGGTTCC
192 TT-TTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
33981 GACGATTGGGAAAGGTAGGGGGGATGTGCGCACATGATGTCCGATGGGTGCAGGTACTTGGCCCT
256 GACGATTGGG---GGGACGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
34046 TATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGAT
317 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
34111 TTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGGCAATTTTTTCAAATGGTCA
382 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
34176 CAAAATCCTGCACACTTCGA
447 CAAAATCCTGTACACTTCGA
34196 TCCACGGCTT
Statistics
Matches: 13544, Mismatches: 2073, Indels: 1758
0.78 0.12 0.10
Matches are distributed among these distances:
832 209 0.02
833 137 0.01
838 124 0.01
839 75 0.01
840 169 0.01
841 2 0.00
842 103 0.01
843 13 0.00
844 258 0.02
845 4 0.00
846 83 0.01
847 16 0.00
848 22 0.00
849 2 0.00
850 3 0.00
852 5 0.00
853 2 0.00
854 3 0.00
855 96 0.01
856 88 0.01
857 2 0.00
858 169 0.01
859 59 0.00
860 7 0.00
861 10 0.00
862 537 0.04
863 165 0.01
864 92 0.01
865 377 0.03
866 36 0.00
867 222 0.02
868 83 0.01
869 255 0.02
870 532 0.04
871 209 0.02
872 111 0.01
873 180 0.01
874 78 0.01
875 146 0.01
876 102 0.01
877 55 0.00
878 67 0.00
879 105 0.01
880 80 0.01
881 48 0.00
882 251 0.02
883 234 0.02
884 548 0.04
885 96 0.01
886 145 0.01
887 693 0.05
888 226 0.02
889 6 0.00
890 36 0.00
891 85 0.01
892 282 0.02
893 24 0.00
894 585 0.04
895 1604 0.12
896 1058 0.08
897 575 0.04
898 352 0.03
899 102 0.01
900 6 0.00
901 61 0.00
902 8 0.00
903 11 0.00
904 118 0.01
905 57 0.00
906 202 0.01
907 5 0.00
908 1 0.00
909 4 0.00
910 4 0.00
911 18 0.00
912 24 0.00
913 21 0.00
914 13 0.00
915 5 0.00
916 3 0.00
917 2 0.00
919 4 0.00
920 6 0.00
921 5 0.00
922 28 0.00
923 8 0.00
924 4 0.00
925 2 0.00
926 2 0.00
927 1 0.00
928 10 0.00
929 17 0.00
930 13 0.00
931 11 0.00
932 4 0.00
933 1 0.00
934 7 0.00
936 4 0.00
937 6 0.00
938 9 0.00
939 1 0.00
940 9 0.00
941 10 0.00
944 3 0.00
945 5 0.00
946 9 0.00
947 5 0.00
949 4 0.00
950 2 0.00
953 2 0.00
954 2 0.00
956 10 0.00
957 15 0.00
959 4 0.00
960 9 0.00
961 2 0.00
962 5 0.00
963 2 0.00
964 3 0.00
965 1 0.00
966 3 0.00
967 3 0.00
969 3 0.00
972 1 0.00
974 4 0.00
975 2 0.00
976 21 0.00
977 16 0.00
978 5 0.00
979 8 0.00
980 7 0.00
981 11 0.00
982 24 0.00
983 4 0.00
984 11 0.00
985 15 0.00
986 13 0.00
987 11 0.00
988 10 0.00
989 8 0.00
990 20 0.00
991 10 0.00
992 11 0.00
993 11 0.00
994 13 0.00
995 8 0.00
996 13 0.00
997 10 0.00
998 15 0.00
1000 4 0.00
1001 1 0.00
1002 4 0.00
1003 2 0.00
1004 1 0.00
1005 4 0.00
1007 6 0.00
1008 5 0.00
1009 4 0.00
1010 5 0.00
1011 2 0.00
1012 4 0.00
1013 2 0.00
1014 8 0.00
1015 2 0.00
1016 1 0.00
1017 5 0.00
1018 6 0.00
1019 13 0.00
1020 13 0.00
1021 12 0.00
1022 10 0.00
1023 7 0.00
1024 1 0.00
1025 1 0.00
1026 4 0.00
1027 2 0.00
1028 1 0.00
1029 19 0.00
1030 7 0.00
1031 6 0.00
1032 1 0.00
1034 7 0.00
1035 10 0.00
1036 7 0.00
1037 21 0.00
1038 27 0.00
1039 24 0.00
1040 12 0.00
1041 6 0.00
1042 4 0.00
1043 4 0.00
1044 2 0.00
1045 2 0.00
1046 10 0.00
1047 14 0.00
1048 4 0.00
1049 8 0.00
1050 3 0.00
1051 10 0.00
1052 4 0.00
1053 11 0.00
1054 9 0.00
1055 1 0.00
1056 2 0.00
1057 1 0.00
1058 2 0.00
1059 11 0.00
1060 10 0.00
1062 4 0.00
1063 1 0.00
1064 6 0.00
1065 1 0.00
1067 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (893 bp):
CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCG
GACCAGACCAAGGGTTGCAGGTGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTTTT
CGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
TTGGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGGACCCGA
Found at i:18699 original size:26 final size:26
Alignment explanation
Indices: 18669--18721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18659 GTTGACTTAG
18669 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
*
18695 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18721 G
1 G
18722 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19150 original size:10 final size:11
Alignment explanation
Indices: 19133--19163 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
19123 AAACTCCTTC
19133 TAAAAAAATTT
1 TAAAAAAATTT
19144 TAAAAAAATTT
1 TAAAAAAATTT
19155 TAAAAAAAT
1 TAAAAAAAT
19164 CTCGAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAAAATTT
Found at i:22824 original size:894 final size:894
Alignment explanation
Indices: 21085--22987 Score: 2730
Period size: 894 Copynumber: 2.1 Consensus size: 894
21075 CATCCCGCCT
* * *
21085 CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCG
1 CTCT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCG
* ** * * *
21150 AGGGTTGTGGCAGTTGGATCGGCTGCACGTAGGGGGGACCCGATCAATCCCCGGCTTACGCATCC
65 AGGGTTGTGGAAGCAGGATCGGCAGCACGTAGGGGGGACCCGATCGATCCCCGACTTACGCATCC
* * * *
21215 TACCCATCTGGCCGGCTAAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCTTACGGAGTTC
130 TACCCATCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * **
21280 ATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTGTAACATCGGACCAGACCAAGGGTTGTGGG
195 ATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTGTAACATCGGACCAGACCAAGGGTTGCAGG
* * ** **
21345 CGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTCCCCCGGGGCACCATCGTCGGA
260 CGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTCCCCCGAGGCACCATCACCAAA
* * * * * * **
21410 GCATTGTCGGAGAACCTACCGGCGGCATTGGGGTTCCGACGGTTGGGGGGGTAGGGGGTGTGGGC
325 GCATCGCCGGAGAACCTACCGACGACATTGGGGTTCCGACGATTGGGGGCG-AGGGGGTGTACGC
* *
21475 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTC
389 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTC
* ** *
21540 AAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTTTTGCCAGTAGCCATTAAAG
454 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
*
21605 TGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAACTG
519 TGTCTCAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAACTG
* *
21670 AATTTTTTTGTACATGACAATAAAAATACAAGGATCACATCTAACAAGTTTGGGGCAAAAAATCC
584 AATTTTTTTATACATGACAATAAAAATACAAGGATCACATCTAACAAGTTTGGGGCAAAAAACCC
21735 TACTAAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAA
649 TACTAAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAA
* *
21800 CGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCA
714 CAACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** * *
21865 TAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGAT
779 TAAAAATGGCATTGGCACAGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
21930 CCACGACTTGCGCATCCCACCTCTCTGGCCGGCATAGTGCCCGCCCACCCG
844 CCACGACTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCCGCCCACCCG
* * ** *
21981 CT-TGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATGATTGGACT-GAACCA
1 CTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCG
* **
22044 AGGGTTGTGGTAAG-AGGATCGACAGCACGTAGGGGGGACCCGATCGATCCCCGACTTGTGCATC
65 AGGGTTGTGG-AAGCAGGATCGGCAGCACGTAGGGGGGACCCGATCGATCCCCGACTTACGCATC
* * * * * *
22108 TTGCCCCTCTGGCCGACTGAGCACCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
129 CTACCCATCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
22173 CATTCCCAATCTAAGCATAC-AGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCA
194 CATTCCCAATCTAAGCATACGA-AGTTCATTCCCAGTGTAACATCGGACCAGACCAAGGGTTGCA
* **
22237 GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGCCCGAGGCACCATCACC
258 GGCGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACA-TTTTTTTCCCCCGAGGCACCATCACC
22302 AAAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTGGGGGACG-GGGGGTGT
322 AAAGCATCGCCGGAGAACCT-ACCGACGACATTGGGGTTCCGACGATTGGGGG-CGAGGGGGTGT
*
22366 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCGAA
385 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAA
22431 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
450 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
*
22496 AAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
515 AAAGTGTCTCAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
** * * ** * *
22561 GTTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC-CAAA
580 ACTGAATTTTTTTATACATGACAATAAAAATACAAGGATCACATCTAACAAGTTTGGGGCAAAAA
* * * *
22625 ACCCTTTCTGAAAAAA-TTTTAAAATAATCCCGAACTGTAAAAAGTTT-AGAAAATCATGAAAAA
645 ACCC-TACTAAAAAAATTTTTAAAA-AATCCCAAACCGTAAAAAGTTTCA-AAAATCATGAAAAA
* * *
22688 TAGAAAACAAGT-GTCTTGCCATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
707 AAGAAAACAACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
22752 GAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
772 CAAGCCATAAAAATGGCATTGGCACAGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * * *
22817 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGTCCACCCG
837 TATCGATCCACGACTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCCGCCCACCCG
* * * *
22875 CTCT-TTTCATCAGTTGGCTTAGGCATACGGAGTTCATTGCCAATCTAAGATCAGACTAGACTGA
1 CTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
* *
22939 GGGTTGT-GACAGCAAGATCGGCAGCACGCAGGGGGGACCCGATCGATCC
66 GGGTTGTGGA-AGCAGGATCGGCAGCACGTAGGGGGGACCCGATCGATCC
22988 TTGGTGTTAT
Statistics
Matches: 890, Mismatches: 104, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
892 1 0.00
893 5 0.01
894 514 0.58
895 338 0.38
896 31 0.03
897 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGA
GGGTTGTGGAAGCAGGATCGGCAGCACGTAGGGGGGACCCGATCGATCCCCGACTTACGCATCCT
ACCCATCTGGCCGACTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAATCTAAGCATACGAAGTTCATTCCCAGTGTAACATCGGACCAGACCAAGGGTTGCAGGC
GCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTCCCCCGAGGCACCATCACCAAAG
CATCGCCGGAGAACCTACCGACGACATTGGGGTTCCGACGATTGGGGGCGAGGGGGTGTACGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
TCTCAAATGAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAACTGAA
TTTTTTTATACATGACAATAAAAATACAAGGATCACATCTAACAAGTTTGGGGCAAAAAACCCTA
CTAAAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACA
ACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACAGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGACTTGCGCATCCCACCTCTCTGGCCGACATAGTGCCCGCCCACCCG
Found at i:30299 original size:26 final size:26
Alignment explanation
Indices: 30270--30322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30260 GTTGACTTAG
*
30270 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
30296 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30322 G
1 G
30323 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32059 original size:26 final size:26
Alignment explanation
Indices: 32029--32081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32019 GTTGACTTAG
*
32029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
32055 GCATATAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32081 G
1 G
32082 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33049 original size:887 final size:882
Alignment explanation
Indices: 31154--34195 Score: 3771
Period size: 887 Copynumber: 3.4 Consensus size: 882
31144 GTTGACTTAC
* * * * * * **
31154 GCATACGGAGTTCATTCCCATTGTAAGATC-AGATCGGACCGAGGGTTGCAGGTGCACATGCTGG
1 GCATACAGAATTCATTCCCAGTGTAAGATCGA-ACCAGACCGAGGGATGTGGGTGCACATGCTGG
** * * * *
31218 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCAGCATCGTCTGAGCATCGCCAGA
65 GCTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGCC-CGAG--GCA-C--C--ATCATCG---GA
* * * *** * **
31283 GAACCTGACTGACGGCATTGGGGTTTTAACGATTGGGTGGGGCGAAAGGGGGTGTGCTTACATGA
119 GAACCTAACCGACGGTATTGGGGTTCCGACGATT-GG-GGGG-G-AGGGGGGTGTGCGCACATGA
* * *
31348 TATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
180 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
31413 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
245 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
31478 AAATGCGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTT
310 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTT
* * * **
31543 TTTGTGCATACCAAAAAAATTACAAGGATCACTTCTAAAAAGTTTGGGGCCAAAACTCCTTCTAA
375 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-A
* * * *
31608 AAAAATTAAAAAAAAACCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
439 AAAAATTTAAAAAAAATCTCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
* **
31673 GTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAA
504 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
31738 TGGCATTGGCATGACAGAAATATGAAGATGTGCCCAAACCCACCTACCACCTTATCGATCCATGG
569 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * *
31803 CTTGCGCATCCCGCCTCTCGGGTCGGCGTACTGCCTGCCCGCCCGATCGTTTCGTCAGTTGGCTT
634 CTTGCGCATCCCGCCTCTCGGGTCGGTGTAGTGCCTGCCCGCCCGCTC-TTTCATC-GTTGGCTT
* * *
31868 TGGCATACGGAGTTCATTCCTAGTATAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGAT-TG
697 AGGCATACGGAGTTCATTCCTAGTATAAGATCAGACCAGACCAAGGGTTGTGATAGTAGGATCT-
* * ** *
31932 GCAGCACATAGGAGGGGACCTGGGCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
761 ACAGCACATAGG-GGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTAAG
* ** * *
31997 CGGCCGCACGCAT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 CGCCCGCACGC-TCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
* * * * ** * *
32055 GCATATAGAGTTCATTCCCAGTGTAAGATCAAACCAGACCGAGGGTTACGGGTACACATGCTAGG
1 GCATACAGAATTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGATGTGGGTGCACATGCTGGG
* ** *
32120 CT-AGAGCATGTACTGGTGCCGCATTTTTTTTCGCTTGAGGCACCATCATCGGAGAACCTGACCG
66 CTCA-AGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCATCGGAGAACCTAACCG
* * * *
32184 ACGGTAATGGGGTTCCGACAATTGGGGGGGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
130 ACGGTATTGGGGTTCCGACGATTGGGGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
32249 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
32314 GAGCATTTGAGATTTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
260 GAGCATTTGAGATTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
32379 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA
* * *
32444 AAAAAATACAAGAATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAGATTTTTAAAA
389 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA-A-TTTAAAAA
* * ** * * *
32509 AAATCTCGAACAGTACAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
452 AAATCTCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
* *
32574 ACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATG
517 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * **
32639 GCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAGCCTA
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * * *
32704 CCTCTC-GGTTGATGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGT
647 CCTCTCGGGTCGGTGTAGTGCCTGCCCGCCCGCTC-TTTCATC-GTTGGCTTAGGCATACGGAGT
* * * ** **
32768 TCATTCGTAGTTTAAGATCAGACCAGATCGGGGGTTGTGATAGTAGGATCTACAGCATGTAGGGG
710 TCATTCCTAGTATAAGATCAGACCAGACCAAGGGTTGTGATAGTAGGATCTACAGCACATAGGGG
* * *
32833 GGTACCCGACCGATCCCCGACTTGTGCATCCTGCCCATCTGGTCGGCTAAGCGCCCGCACGCTCG
775 GG-ACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCG
* *
32898 TTTTGTGGGTTGACTTAGGCATACGAAATTCATTCACATTCTAA
839 TTTTGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
* * * *
32942 GCATACAGAATTCATTCCTAGTTTAAGATCGCACCAGACCGAGGGATGTGGGTGCATATGCTGGG
1 GCATACAGAATTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGATGTGGGTGCACATGCTGGG
* ** * * *
33007 CTCAAGCATGTGCAGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGCCGGAGAACCTTACTGG
66 CTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCATCGGAGAACCTAACCGA
** ** * *
33072 CGACATTGGGGTTTTGATGATTGGGGGTGGGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGGTATTGGGGTTCCGACGATT----G-GGGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
33137 TGCTGGCACTTGGCCCCTATATTAGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
33202 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
33267 CTTTTTTCAAATGATCATAAAATCTTGTACA---C---TTTTTATCT-AAATTTTTTTGTGCATG
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAA-TTTTTTGTGCATG
*
33325 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAA
385 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTAA
*
33390 AAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
449 AAAAAATCTCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
*
33455 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGC
514 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
33520 ACAGCAAAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGATCCACCGA-TTGCGCAT
579 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGACTTGCGCAT
* * * *
33583 CTCCGCCATCTCTGGCCGGTGTAGTGCCTGCCC-CCCGCTCGTT-AGCGTTGGCTTAGGCATACG
643 C-CCGCC-TCTCGGGTCGGTGTAGTGCCTGCCCGCCCGCTCTTTCATCGTTGGCTTAGGCATACG
* * * ** * *
33646 GAGTTCATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTGTGATAGTAGGATCGACAGCACACA
706 GAGTTCATTCCTAGTATAAGATCAGACCAGACCAAGGGTTGTGATAGTAGGATCTACAGCACATA
* * * *
33711 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAAGCACCCGCATG
771 G-GGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACG
* *
33776 CTCATTTTGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAA
835 CTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
* * *** *
33824 GCATAC-GAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAAGGATGTGGGTGCACATGCTGG
1 GCATACAGAA-TTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGATGTGGGTGCACATGCTGG
* * * * **
33888 GCTCGAGCATATGCTGGAGCCACATTTTTTCTTCGCCCGAAACACCATCGCCGGAGCATCGTCGG
65 GCTCAAGCATGTGCTGGTGCCGCATTTTTT-TTCGCCCGAGGCACCAT--------CA---TCGG
* * *
33953 AGAACCTAATCGACGGCT-TTGGGGTTCCGACGATTGGGAAAGGTAGGGGGGATGTGCGCACATG
118 AGAACCTAACCGACGG-TATTGGGGTTCCGACGATTGGG--GGGGAGGGGGG-TGTGCGCACATG
* * *
34017 ATGTCCGATGGGTGCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAA
179 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
34082 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCT
244 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
34147 GAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTGCACACTTCGA
309 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
34196 TCCACGGCTT
Statistics
Matches: 1853, Mismatches: 245, Indels: 90
0.85 0.11 0.04
Matches are distributed among these distances:
881 3 0.00
882 240 0.13
883 49 0.03
884 162 0.09
885 83 0.04
886 139 0.08
887 463 0.25
888 190 0.10
889 4 0.00
890 30 0.02
891 81 0.04
892 283 0.15
893 6 0.00
894 28 0.02
895 2 0.00
897 1 0.00
898 3 0.00
900 2 0.00
901 83 0.04
902 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (882 bp):
GCATACAGAATTCATTCCCAGTGTAAGATCGAACCAGACCGAGGGATGTGGGTGCACATGCTGGG
CTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCATCGGAGAACCTAACCGA
CGGTATTGGGGTTCCGACGATTGGGGGGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTAAAAAAAAT
CTCAAACAGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTC
TCGGGTCGGTGTAGTGCCTGCCCGCCCGCTCTTTCATCGTTGGCTTAGGCATACGGAGTTCATTC
CTAGTATAAGATCAGACCAGACCAAGGGTTGTGATAGTAGGATCTACAGCACATAGGGGGGACCC
GACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTTGTG
GGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
Found at i:33827 original size:26 final size:26
Alignment explanation
Indices: 33798--33850 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33788 GTTGACTTAG
33798 GCATACAAAATTCATTCCCAGTCTAA
1 GCATACAAAATTCATTCCCAGTCTAA
* * *
33824 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACAAAATTCATTCCCAGTCTAA
33850 G
1 G
33851 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAATTCATTCCCAGTCTAA
Found at i:34460 original size:26 final size:26
Alignment explanation
Indices: 34431--34481 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
34421 TGACTTAGGA
34431 ATACAAAATTAATTCCCAGTCTAAGC
1 ATACAAAATTAATTCCCAGTCTAAGC
* * * *
34457 ATACGAAGTTCATTCCCAGTGTAAG
1 ATACAAAATTAATTCCCAGTCTAAG
34482 ATTGGATTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACAAAATTAATTCCCAGTCTAAGC
Found at i:34838 original size:631 final size:631
Alignment explanation
Indices: 33563--34948 Score: 1897
Period size: 631 Copynumber: 2.2 Consensus size: 631
33553 TACCACCCTA
* * * * ** * *
33563 TCGATCCACCGATTGCGCATCTCCGCCATCTCTGGCCGGTGTAGTGCCTGCCC-CCCGCTCG-TT
1 TCGATCCACGGCTTGCGCATC-CCACC-TCTCTGGCCAGCATAGTACCCGCCCGCCCGCTCGTTT
* * **
33626 AG-C-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTGTG
64 CGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTACG
* * *
33689 ATAGTAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
129 ACAGTAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCCTGCCCCTC
* * * * *
33754 TGGCCAGCTAAGCACCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACAAAATTCATTCCCAG
194 TGGCCAGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGAATACAAAATTAATTCCCAG
33819 TCTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAAGGATGTGGGTGCACATG
259 TCTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAAGGATGTGGGTGCACATG
33884 CTGGGCTCGAGCATATGCTGGAGCCACATTTTTTCTTCGCCCGAAACACCATCGCCGGAGCATCG
324 CTGGGCTCGAGCATATGCTGGAGCCACATTTTTTCTTCGCCCGAAACACCATCGCCGGAGCATCG
* * * *
33949 TCGGAGAACCTAATCGACGGCTTTGGGGTTCCGACGATTGGGAAAGGTAGGGGGGATGTGCGCAC
389 TCAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGGAAAGGTAGGGGGGATATGCGCAC
* * *
34014 ATGATGTCCGATGGGTGCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
454 AAGATGTCCAATGGGTACAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
* *
34079 GAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTG
519 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTGAAGTG
*
34144 TCTGAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTGCACACT
584 TCTGAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTACACACT
* *
34192 TCGATCCACGGCTTGCGCATCCCACCTCTTTGGCCAGCATAGTACCCGCCCGCCTGCTCGTTTCG
1 TCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCAGCATAGTACCCGCCCGCCCGCTCGTTTCG
* * * * *
34257 TCGGTTGGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATC-GAACTGGATCGAGGGTTACGG
66 TCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAAATCAG-ACTGGACCAAGGGTTACGA
* * * *
34321 CAGTAGGATCGACAGCACATAGAGGGGGACCC-AGTCGATCCTCGGCTTACGAATCCTGTCCCTC
130 CAGTAGGATCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTACGAATCCTGCCCCTC
* *
34385 TGGCCAGCTAAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGAATACAAAATTAATTCCCAG
194 TGGCCAGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGAATACAAAATTAATTCCCAG
*
34450 TCTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAGGGATGTGGGTGCACATG
259 TCTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAAGGATGTGGGTGCACATG
* * * * * * * ** *
34515 TTGGGCTCGGGCATGTGCTGGTGTCATATTTTTTCTTTGCCCGGGACACCATCGTCGGAGCATCG
324 CTGGGCTCGAGCATATGCTGGAGCCACATTTTTTCTTCGCCCGAAACACCATCGCCGGAGCATCG
* ** * * * * *
34580 TCAGAGAACCTGACCGGTGGCATTGGGGTTTCGATGATTGGGAAGGGTGGGGGGGGATATGTGCA
389 TCAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGGAAAGGT-AGGGGGGATATGCGCA
* * * *
34645 TAAGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGG--CCTTCATCCCTCATCAAACCTC
453 CAAGATGTCCAATGGGTACAGGTACTTGGCCCTTATATTGGTCCCCT-ATCCCTCATCAAACCTC
**
34708 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATGGGTTTGCTACCAGTAGCCATTGAAG
517 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTGAAG
* *
34773 TGTTTGAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTATACACT
582 TGTCTGAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTACACACT
* * * * * *
34823 TCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCG
1 TCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCAGCATAGTACCCGCCCGCCCGCTCGTTTCG
* * * * * * ** *
34888 TCGATTGGCTTAGGCATACGAAGTTCATTTCCAGTGTAACATCAGACCAGACCGAGGGTTA
66 TCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTA
34949 TGGTAGCTTA
Statistics
Matches: 660, Mismatches: 88, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
627 19 0.03
628 11 0.02
629 22 0.03
630 6 0.01
631 553 0.84
632 49 0.07
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (631 bp):
TCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCAGCATAGTACCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAAATCAGACTGGACCAAGGGTTACGAC
AGTAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTACGAATCCTGCCCCTCTG
GCCAGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGAATACAAAATTAATTCCCAGTC
TAAGCATACGAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAAGGATGTGGGTGCACATGCT
GGGCTCGAGCATATGCTGGAGCCACATTTTTTCTTCGCCCGAAACACCATCGCCGGAGCATCGTC
AGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGGAAAGGTAGGGGGGATATGCGCACAA
GATGTCCAATGGGTACAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTGAAGTGTC
TGAAATGGGGGCAATTTTTTCAAATGGTCACAAAATCCTACACACT
Found at i:36327 original size:15 final size:15
Alignment explanation
Indices: 36304--36342 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
36294 ATATTATATG
*
36304 AAATGCAAAAAAAAT
1 AAATACAAAAAAAAT
36319 AAATAC-AAAAAAAT
1 AAATACAAAAAAAAT
36333 -AATACAAAAA
1 AAATACAAAAA
36343 GATAGCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 5 0.23
14 12 0.55
15 5 0.23
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.13
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:36330 original size:14 final size:13
Alignment explanation
Indices: 36311--36342 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
36301 ATGAAATGCA
36311 AAAAAAATAAATAC
1 AAAAAAAT-AATAC
36325 AAAAAAATAATAC
1 AAAAAAATAATAC
36338 AAAAA
1 AAAAA
36343 GATAGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAAATAATAC
Found at i:37763 original size:17 final size:17
Alignment explanation
Indices: 37743--37809 Score: 57
Period size: 17 Copynumber: 4.0 Consensus size: 17
37733 CTAAGTTTTT
37743 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
* *
37760 AAAATCTCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
37777 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
**
37794 -AAAGTCCTAAAAATCC
1 AAAACCCCTAAAAATCC
37810 TAAAGACAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
16 15 0.38
17 20 0.51
18 4 0.10
ACGTcount: A:0.49, C:0.28, G:0.01, T:0.21
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:44110 original size:9 final size:9
Alignment explanation
Indices: 44098--44151 Score: 72
Period size: 9 Copynumber: 5.9 Consensus size: 9
44088 ATGAGGGCAT
*
44098 AAAAAAAAT
1 AAAAAAAAG
* *
44107 AAAAACAAC
1 AAAAAAAAG
44116 AAAAAAAAG
1 AAAAAAAAG
44125 AAAAAAAAG
1 AAAAAAAAG
44134 AAAAAAAAG
1 AAAAAAAAG
44143 AAGAAAAAA
1 AA-AAAAAA
44152 TTGGTTATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
9 34 0.85
10 6 0.15
ACGTcount: A:0.87, C:0.04, G:0.07, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:44131 original size:21 final size:20
Alignment explanation
Indices: 44098--44151 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
44088 ATGAGGGCAT
*
44098 AAAAAA-AATAAAAACAACAA
1 AAAAAAGAAAAAAAACAA-AA
*
44118 AAAAAAGAAAAAAAAGAAAA
1 AAAAAAGAAAAAAAACAAAA
44138 AAAAGAAGAAAAAA
1 AAAA-AAGAAAAAA
44152 TTGGTTATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.87, C:0.04, G:0.07, T:0.02
Consensus pattern (20 bp):
AAAAAAGAAAAAAAACAAAA
Found at i:47712 original size:26 final size:26
Alignment explanation
Indices: 47682--47760 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
47672 GTTGACTTAG
47682 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
47708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
47734 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
47760 G
1 G
47761 ATCGAACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:48642 original size:26 final size:26
Alignment explanation
Indices: 48613--48665 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
48603 GGTTACTTAG
48613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
48639 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
48665 G
1 G
48666 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:50815 original size:896 final size:895
Alignment explanation
Indices: 48693--51223 Score: 3480
Period size: 895 Copynumber: 2.8 Consensus size: 895
48683 GTTGTGGGTG
* * *
48693 CACATGATGTGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
48758 TGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGAAGCCGTTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAA
48823 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC-AAGTTTTTAGC
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAA-TTTTTAGC
* * *
48887 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCCAAAACT
195 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * *
48952 CCTTCTGAAAAATTTTTTAAAAAATCCAGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
260 CCTTCTGAAAAAATTTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
* ** * *
49017 AACGAGTCGTCTTGGGATGAAACTTCACATGAAGGCTTAAAGGACCGTTGTATGAATTTACAAGC
325 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
49082 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
49147 ATCCATGGCTTGCGCATCCCGCCTCTTTGGTCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCATCG
455 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCG
* * *
49212 GTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGT
520 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * *
49277 AGGATCGATAGCACGAAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
585 AAGATCGACAGCACGAAGGGGGACCCAGACGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
*
49342 CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
650 CTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGC
* * * * *
49407 ATACGGAGGTCATTCCTAGTGTAAGATCGGACCAGACCGAGGGTTACGGGTGCATATGCTGGGCT
715 ATACGGAGGTCATTCCCAGTGAAAAATCGGACCAGACCGAGGGTTACGGGTCCACATGCTGGGCT
* * * * * *
49472 CGGGCATGTGCTGGTGCCGTATTTTTTCTCACCCGGGGCATCATCGCTAGAGCATCACCGGGGAA
780 CGGGCATGTGCTAGTGCCATATTTTTTCTCACCCGAGGCACCATCGCCAGAGCATCACCGGAGAA
* *
49537 CCTGACCGACGGCATTGGGGTTCCATCGATTGGGGAGGTGGGGGGTGTGCG
845 CCTGACCGACGGCATTGGGGTTCCATCGATTGGGGAGGCGGGGGGTGTGCA
* * *
49588 CACATGATGTGCGATGGGTGCTGGCACTTGACCCTTATATTGGCCCCCTATCCCTCATCAATCCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
49653 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAA
*
49718 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGCT
* * * * *
49783 AAATTTTTTTGTGCATGCCACCAAAAATACAAAGATCACGTCTACCAAGTTGGGGGCCAAAAAAC
196 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* * *
49848 CTTCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAATAGTTTTTAAAATCGTGAAAAATAGAAA
261 CTTCTGAAAAAATTTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
* * *
49913 ACGAGTCTTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGATCATTGTATGAATTTACAAGCC
326 ACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * *
49978 ATAAAAATGGTGTTGGTA-GGGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
391 ATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
50042 TCAAAGGTTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCACGTTCGCTCGTTTCGTCGG
456 TCCAAGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGG
* * *** *
50107 TTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATCGGATGGGACCGAGGGTTGCTGCAGCA
521 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * * * *
50172 AGATCTG-CAGCAATTG-GGGGGGACCCAGACGATCCCCGGCTTGTGCATCCTGCCCGTCTGGCG
586 AGATC-GACAGC-A-CGAAGGGGGACCCAGACGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* * * *
50235 GGCTGAGCGCCTGCACTG-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
648 GGCTGAACGCCCGCAC-GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * *
50299 AGCATACGGAGTTCATTCCCAGTGAAAAATTGGTCCAGATCGAGGGTTACGGGTCCACATGCTGG
712 AGCATACGGAGGTCATTCCCAGTGAAAAATCGGACCAGACCGAGGGTTACGGGTCCACATGCTGG
* * * * * *
50364 GCTCGGGCATGTGCTAGTGTCACAT-TTTTTTTTCGCTCGAGGCACCATTGCCGGAGCATCGCCG
777 GCTCGGGCATGTGCTAGTG-C-CATATTTTTTCTCACCCGAGGCACCATCGCCAGAGCATCACCG
* ** *
50428 GAGAACTTGACC-AGCGGCATTGGGGTTTCGGT-GATTGGGGGGGCGGGGGGTGTGCA
840 GAGAACCTGACCGA-CGGCATTGGGG-TTCCATCGATTGGGGAGGCGGGGGGTGTGCA
* *
50484 CACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* **
50549 CGAGAACTCACACCCCCTT-GAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAA
* *
50613 GTGTCCGGAATGGGGACACTTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGC
131 GTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGC
** * * *
50678 TGAATTTTTTTGTATATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAATT
195 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
** * *
50743 CCTTCTGAAAAAATTTTTAAAAAATCTGGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAA
260 CCTTCTGAAAAAATTTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAA
50808 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
325 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
50873 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * ** *
50938 ATCCACGGCTTGTGCATCCCGTCTCTCTGGTCAGCACAGTGCCCGCCCGCTCGCTTGTTTCATCG
455 ATCCAAGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCG
* * ***
51003 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTAAAGGCAGC
520 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * *
51068 AAGATTGGCAGCATGCAAGATAGGACCCGGTCGATCCTC-GATCGATCCCTGACTTGCGCATCCT
585 AAGA-TCG-A-CA-GCACGA-AGG----GG--GA-CC-CAGA-CGATCCCCGACTTGCGCATCCT
* ** * * ** * * * *
51132 ACCTTTCTGGCCGGCTGAGCGCTCGCATACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCT
636 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
51197 TTCCCAGTCTAAGCATACGGAGTTCAT
701 TTCCCAATCTAAGCATACGGAGGTCAT
Statistics
Matches: 1434, Mismatches: 174, Indels: 42
0.87 0.11 0.03
Matches are distributed among these distances:
894 159 0.11
895 604 0.42
896 392 0.27
897 162 0.11
898 1 0.00
899 1 0.00
900 3 0.00
901 4 0.00
905 2 0.00
907 2 0.00
908 4 0.00
909 100 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAATTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
CTTCTGAAAAAATTTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
ACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCAAGGCTTGCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGCCCGCTCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
AGATCGACAGCACGAAGGGGGACCCAGACGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGC
TGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
TACGGAGGTCATTCCCAGTGAAAAATCGGACCAGACCGAGGGTTACGGGTCCACATGCTGGGCTC
GGGCATGTGCTAGTGCCATATTTTTTCTCACCCGAGGCACCATCGCCAGAGCATCACCGGAGAAC
CTGACCGACGGCATTGGGGTTCCATCGATTGGGGAGGCGGGGGGTGTGCA
Done.