genome.fa.s122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167947.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51204

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460--494	18	1.9	18	88	0	52	45	5	2	45	1.41
551--595	20	2.3	20	84	3	56	46	0	2	51	1.13
1285--1349	18	3.4	19	75	12	62	55	0	0	44	0.99
1436--1483	21	2.3	21	81	0	51	41	2	0	56	1.11
1448--1500	21	2.4	22	78	18	56	39	1	0	58	1.09
1445--1486	21	2.0	21	90	0	66	38	0	0	61	0.96
1945--1985	18	2.1	18	86	13	55	46	0	2	51	1.14
2357--3229	181	4.8	180	76	7	696	42	9	8	39	1.67
3531--3965	181	2.4	180	81	5	500	41	7	7	42	1.62
10061--10114	25	2.2	25	83	6	76	22	7	20	50	1.73
11575--11609	15	2.2	16	90	5	54	54	2	0	42	1.15
11841--11881	20	2.1	19	86	4	55	48	4	0	46	1.23
12208--12275	19	3.3	21	75	18	63	55	1	0	42	1.08
12867--12909	22	1.9	23	90	4	70	48	2	4	44	1.36
13405--13461	15	3.8	14	73	15	51	49	5	3	42	1.42
13624--13675	18	2.9	18	77	11	63	53	1	0	44	1.11
13650--13714	24	2.9	22	72	18	55	47	4	0	47	1.22
13650--13755	44	2.4	42	83	13	126	49	4	0	45	1.29
13721--13783	26	2.4	26	77	17	67	46	4	3	46	1.40
13861--13911	17	2.8	20	74	20	56	49	0	0	50	1.00
13870--13934	22	3.0	21	75	22	55	49	0	0	50	1.00
13742--13926	13	14.7	13	68	18	65	48	1	1	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13885--13932	18	2.8	18	81	12	57	52	0	0	47	1.00
14466--14544	39	2.0	39	85	9	108	45	0	2	51	1.14
16697--16729	11	3.1	11	82	8	50	45	0	0	54	0.99
16866--16910	19	2.3	20	78	14	51	55	2	0	42	1.12
16879--16942	23	2.9	22	77	20	71	59	3	1	35	1.23
17328--17382	20	2.7	21	77	5	58	56	3	1	38	1.28
17545--17640	32	3.2	28	74	12	86	51	0	2	46	1.12
17588--17630	20	2.2	20	83	8	52	51	0	2	46	1.13
17566--17626	22	2.7	22	74	18	54	52	0	3	44	1.17
17775--17821	22	2.1	23	84	4	60	53	2	2	42	1.25
18516--18609	28	3.5	26	75	19	79	51	1	1	46	1.15
18574--18623	21	2.2	23	82	10	59	48	0	2	50	1.12
18590--18667	24	3.1	24	73	20	70	48	1	5	44	1.32
18988--19044	22	2.7	21	72	20	55	43	1	1	52	1.21
19242--19278	15	2.3	17	86	9	51	51	2	2	43	1.30
19463--19524	13	5.0	12	73	13	54	51	1	0	46	1.10
19459--19586	29	4.4	29	72	21	81	49	3	0	47	1.17
19696--19736	16	2.5	16	88	4	55	39	0	2	58	1.11
19917--20421	180	2.8	180	77	9	466	40	7	8	43	1.63
20517--20564	20	2.5	20	78	21	57	52	0	0	47	1.00
20511--20568	17	3.2	16	76	21	53	53	0	0	46	1.00
20587--20634	21	2.5	19	75	18	55	35	4	2	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20909--20951	18	2.3	18	80	4	50	58	0	0	41	0.98
21235--21289	21	2.8	19	77	20	60	45	1	5	47	1.36
21387--21441	21	2.6	21	88	2	74	45	1	5	47	1.36
21583--21631	13	3.6	14	77	17	50	48	2	0	48	1.12
22228--22281	20	3.0	19	82	17	71	55	1	0	42	1.10
22227--22301	23	3.5	23	82	12	81	50	1	0	48	1.09
22448--22492	23	2.0	23	81	0	54	53	0	0	46	1.00
22761--22785	10	2.5	10	100	0	50	32	8	0	60	1.26
22877--22938	25	2.5	26	80	12	69	41	1	1	54	1.19
24169--24214	12	3.3	14	77	19	51	52	4	0	43	1.21
24182--24214	12	2.8	12	100	0	66	51	6	0	42	1.26
24237--24269	13	2.4	14	85	10	50	45	3	3	48	1.33
24430--24484	19	3.1	18	73	19	53	47	3	0	49	1.19
24588--24629	20	2.1	19	83	16	50	47	0	2	50	1.14
26051--26127	22	3.6	21	79	19	72	49	0	2	48	1.15
26053--26126	4	17.5	4	74	22	55	48	0	2	48	1.15
26076--26125	27	1.9	25	88	8	73	50	0	2	48	1.12
26075--26138	20	3.0	21	81	16	71	53	0	3	43	1.16
26193--26227	10	3.4	10	88	7	52	54	0	0	45	0.99
26280--26335	18	3.2	17	80	19	62	44	1	0	53	1.11
26406--26462	17	3.3	17	69	11	53	49	3	3	43	1.36
26475--26509	15	2.3	15	95	0	61	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27049--27102	19	2.8	20	81	18	69	50	1	0	48	1.11
27418--27491	38	1.9	38	83	5	96	52	2	2	41	1.29
28613--28652	21	1.9	21	85	10	55	55	2	2	40	1.27
29551--29593	18	2.3	19	88	4	61	58	0	0	41	0.98
29531--29669	29	4.7	29	77	18	135	53	0	0	45	1.05
29528--29677	10	14.9	10	64	17	53	53	0	0	46	1.05
29680--29784	21	5.0	21	68	18	58	40	0	0	58	1.11
29829--29901	6	12.8	6	76	16	66	42	2	0	54	1.14
29829--29901	12	6.5	11	78	15	78	42	2	0	54	1.14
29980--30031	15	3.3	15	81	5	50	48	3	3	44	1.39
30485--30550	30	2.1	33	83	13	86	50	1	1	46	1.20
30513--30566	28	1.9	28	85	7	74	46	1	1	50	1.23
30930--30969	15	2.6	15	88	11	55	47	2	0	50	1.14
31027--31075	25	2.0	25	84	8	64	46	2	2	48	1.25
31290--31364	33	2.2	36	83	7	93	50	1	1	46	1.18
31455--31512	15	3.9	14	77	18	64	51	1	0	46	1.11
32631--32676	24	1.9	24	82	8	58	43	6	2	47	1.41
32864--32938	27	2.7	27	82	14	82	53	0	2	44	1.14
33103--33141	17	2.2	19	90	9	64	46	0	0	53	1.00
33312--33356	23	1.9	24	95	4	83	44	0	0	55	0.99
34172--34245	21	3.9	17	75	20	60	51	2	1	44	1.24
34767--34812	17	2.6	18	80	13	60	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34846--34887	11	3.5	12	87	9	59	54	0	0	45	0.99
34846--34888	6	7.2	6	79	10	52	53	0	0	46	1.00
35305--35343	15	2.4	16	87	8	53	51	0	0	48	1.00
36301--36443	16	9.2	16	65	26	51	51	2	2	44	1.28
36334--36372	20	2.0	20	89	0	60	51	0	2	46	1.14
36407--36444	15	2.6	14	84	15	51	47	0	0	52	1.00
36888--36930	22	2.0	22	86	9	61	39	0	6	53	1.28
37072--37156	39	2.4	38	83	13	101	52	1	1	44	1.16
37099--37186	12	6.9	12	70	20	54	52	1	1	45	1.15
37097--37153	27	2.1	27	83	6	71	52	1	1	43	1.21
37617--37660	15	2.8	16	80	19	56	38	4	0	56	1.20
37948--37981	17	1.9	18	88	5	52	41	0	0	58	0.98
38160--38193	15	2.3	15	90	10	52	38	8	2	50	1.49
38414--38470	16	3.8	15	76	21	57	50	0	1	47	1.11
38414--38484	29	2.4	29	86	11	101	50	0	1	47	1.09
38429--38497	29	2.4	29	83	9	79	55	2	0	42	1.15
39221--39291	14	5.2	13	75	21	56	39	4	2	53	1.35
39223--39291	30	2.4	29	81	15	74	39	4	2	53	1.36
39717--39750	18	1.9	18	88	5	52	52	5	0	41	1.25
40523--40577	21	2.8	19	77	20	60	45	1	5	47	1.36
40794--40858	19	3.2	21	75	18	66	55	4	6	33	1.45
40894--40961	24	2.9	24	77	18	63	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40912--41002	34	2.7	34	81	10	89	47	2	0	50	1.13
41226--41277	25	2.1	25	82	13	63	50	0	1	48	1.12
41206--41286	34	2.5	33	78	13	87	48	0	1	50	1.08
42505--42564	23	2.5	24	73	10	61	50	0	0	50	1.00
42504--42565	31	2.0	30	87	9	90	51	0	0	48	1.00
42526--42576	16	3.3	16	78	5	52	50	0	0	49	1.00
42681--42721	22	1.9	21	90	5	64	56	2	2	39	1.26
42678--42730	22	2.4	21	82	14	63	56	1	1	39	1.21
42989--43445	181	2.5	181	79	9	425	39	10	8	40	1.71
43541--43809	137	2.0	135	84	7	357	45	9	7	37	1.65

Tables:   1   2