Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 100 of 138
Found at i:15698017 original size:26 final size:26
Alignment explanation
Indices: 15697973--15698026 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
15697963 CCTGTCTGAT
*
15697973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
** *
15697999 CTTAGACTGGGTTTAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15698025 CT
1 CT
15698027 AAATCAACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15698525 original size:159 final size:159
Alignment explanation
Indices: 15698177--15698595 Score: 436
Period size: 159 Copynumber: 2.6 Consensus size: 159
15698167 TTGGTCTGGT
* * *
15698177 TGGGGCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCATGAAACGAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * * **
15698242 TCAGCCTACCGTAGAGGCAGAATGTGCAAGCCGAGGACTGACTCGGTCCCCCCTGCGTGCTGTCG
66 TCAGCCTACCGGAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCCCTGCGTGCTACCG
*
15698307 ATCCTGCTACCACAACCCTCAATTCGATC
131 ATCCTGCTACCACAACCCTCAACTCGATC
** ** * *
15698336 T-GATCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCA
1 TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA
* * * * * *
15698399 CTGAG-CTGGCCGGAGAGGTATAATGCGCAAGCCGGGGAGTGACCCGATCCCCCTCTGCGTGCTA
65 CTCAGCCT-ACCGGAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCC-CTGCGTGCTA
* * *
15698463 CCGGTCCTGCTGCCACAACCCTCGAC-CTGA-C
128 CCGATCCTGCTACCACAACCCTCAACTC-GATC
* * **
15698494 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGACGTACGGGTG
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCA
* * * * * *
15698558 CTCAACCGACCGAAGAGGTAGAATACGGAAGCCGAGGA
65 CTCAGCCTACCGGAGAGGCAGAATGCGCAAGCCGAGGA
15698596 TCGGCCCTAT
Statistics
Matches: 208, Mismatches: 44, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 96 0.46
159 107 0.51
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (159 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
TCAGCCTACCGGAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCCCTGCGTGCTACCG
ATCCTGCTACCACAACCCTCAACTCGATC
Found at i:15700062 original size:159 final size:158
Alignment explanation
Indices: 15699714--15700176 Score: 378
Period size: 159 Copynumber: 2.9 Consensus size: 158
15699704 AACTCCGTAT
* * * * * *
15699714 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGGTCAG
* * * ** * *** *
15699779 TCGACCGGAGAGGCAGAATGTGCAAGCTGAAAATC-AGCCCGGTCACCCC-TGCGTGCTGTCGAT
66 CCGACTGAAGAGGCAGAATACGCAAGCCGGGGATCGA-CCCGGTC-CCCCTTGCGTGCTGCCGAT
** * ** * * * **
15699842 CTTGCTGCCGTAACCCTCGGTTCGGTCT-AA
129 CCCGCTACCACAACCCTCTGTCCGAT-TGGG
* * ** * * * ** * *
15699872 TCTTAGAC-TAAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGGTCA
* * * * * * * *
15699936 GCCGA-TCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGG
65 GCCGACT-GAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCT-TGCGTGCTGCCGA
15700000 TCCCGCTACCACAACCCTCTGTCCGATTGGG
128 TCCCGCTACCACAACCCTCTGTCCGATTGGG
* *
15700031 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGGTCAG
* * *
15700096 CCGACTGAAGAGGTAGAATACGCAAGCCGGGGATCGACCCTGTCTCCCTTGCGTGCTGCCGATCC
66 CCGACTGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCC
*
15700161 TGCTACCACAACCCTC
131 CGCTACCACAACCCTC
15700177 GGTCTAGTTT
Statistics
Matches: 238, Mismatches: 59, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 112 0.47
159 119 0.50
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGGTCAG
CCGACTGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCC
CGCTACCACAACCCTCTGTCCGATTGGG
Found at i:15700216 original size:158 final size:158
Alignment explanation
Indices: 15699715--15700216 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
15699705 ACTCCGTATG
* * *
15699715 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGC
* * * *** * *
15699780 CGACCGGAGAGGCAGAATGTGCAAGCTGAAAATC-AGCCCGGTCACCCCTGCGTGCTGTCGATCT
66 CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCACCCTTGCGTGCTGTCGATCC
* ** * * *
15699844 TGCTGCCGTAACCCTCGGT-TCGGTCTAAT
130 TGCTACCACAACCCTCGGTCT-AGTTTGAT
* * * * ** * * *
15699873 CTTAGAC-TAAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * * *
15699937 CCGA-TCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGGT
65 CCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCACCCT-TGCGTGCTGTCGAT
* * * * **
15700001 CCCGCTACCACAACCCTCTGTC-CGATTGGGG
128 CCTGCTACCACAACCCTCGGTCTAG-TTTGAT
* * * *
15700032 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGGTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGC
* * * * * *
15700097 CGACTGAAGAGGTAGAATACGCAAGCCGGGGATCGACCCTGTCTCCCTTGCGTGCTGCCGATCCT
66 CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCACCCTTGCGTGCTGTCGATCCT
15700162 GCTACCACAACCCTCGGTCTAGTTTGAT
131 GCTACCACAACCCTCGGTCTAGTTTGAT
15700190 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15700217 TTGGACTGGG
Statistics
Matches: 267, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 145 0.54
159 118 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCACCCTTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCTAGTTTGAT
Found at i:15700669 original size:697 final size:697
Alignment explanation
Indices: 15699531--15700962 Score: 1625
Period size: 697 Copynumber: 2.1 Consensus size: 697
15699521 TAGAAATGGA
* * * ***
15699531 ATGAACTCTGTATGCCTAAGCCAACGCACGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGATCGGAGAGG
** ** * * * *
15699596 CAGAATGCACAAGCCAGGGATCGGTCTGGTCCCCCCTGCATCCTGTCGATCTTGCTGCTGGTCCT
66 CAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTACATCCTATCGATCCTACTGCTGGTCCT
* * * ** *
15699661 ACTGTTGCAACCCTCATTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGG
131 ACTGTAGCAAACCTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGG
* * * * * *
15699726 AATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAGTCGACCGGAGAG
196 AATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAATCGACCGGAAAG
** * * * * *
15699791 GCAGAATGTGCAAGCTGAAAATCAGCCCGGTCACCCCTGCGTGCTGTCGATCTTGCTGCCGTAAC
261 GCAGAATGCACAAGCCGAAAACCAGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * * ** *
15699856 CCTCGGTTCGGTCTAATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGA
326 CCTCGATCCGGTCTAATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTCAACCAACAAAACGA
* * * * * * * * * *
15699921 GTGTGCAGGCGTTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCT
391 GCGTGCAGGCGCTGAACCGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCT
* ** * * *
15699986 CTGTGTGCTGTCGGTCCCGCTACCACAACCCTCTGTCCGATTGGGGCTTAGACATGGAATGAACT
456 CTATGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACT
* *
15700051 CCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGGTCAGCCGACT-GAAGAGGTAGAAT
521 CCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCGACTAG-AGAGGCAGAAT
* * * * *
15700115 ACGCAAGCCGGGGATCGACCCTGTCTCCCTTGCGTGCTGCCGATCCTGCTACCA-CAACCCTCGG
585 ACACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTAC-ACCAGCAACCCTCGG
** * * * *
15700179 -TCTAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGG
649 TTC-AGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAGACTAGGG
* * * *
15700228 ATGAACTCCATATGCCTAAGTCAACCCACGGAATGAGCGTACAGGTGCTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGATCGGAGAGG
* ** * *
15700293 TAGAAT-TTCAAGTCC-GGGATCGACCCAGTCCCCCCTACGTGCTATCGATCCTACTGCTGGTCC
66 CAGAATGCACAAG-CCAGGGATCGACCCAGTCCCCCCTACATCCTATCGATCCTACTGCTGGTCC
* * *
15700356 TACTGTAGTAAACCTCGGTCCAGTCCGATCTTAGATTGGGATTGAACTCCGTATGCTTAGACATG
130 TACTGTAGCAAACCTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATG
* * * * *
15700421 GAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCATGCGCTCAATCGATCGGAAA
195 GAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAATCGACCGGAAA
*** ** * *
15700486 GGCAGAATGCACAAGCCGGGGACC-GATTCGATCCCACCCTGCGTGCTGTCGATCCTGCTGTCGC
260 GGCAGAATGCACAAGCCGAAAACCAG-CCCGATCAC-CCCTGCGTGCTGTCGATCCTGCTGCCGC
* * ** *
15700550 AACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCAACAAAA
323 AACCCTCGATCCGGTCTAATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTCAACCAACAAAA
* * * * * *
15700615 CGAGCGTTCGGGGGCTGAACTGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGATCCGATCCT
388 CGAGCGTGCAGGCGCTGAACCGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGACCCGATCCC
* * * * * * *
15700680 TCTTTATGTGCTACCAGTCCCGCTCCCACAACCCTCAGTTCGGCTGGGTCTTAGACATGTAATGA
453 CCTCTATGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGA
* * * * *
15700745 ACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCCGTCGGCTAGAGAGGCAGA
518 ACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCGACTAGAGAGGCAGA
* * * **
15700810 ATACACAAGCTGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTACAGTAGCAACCCTCG
583 ATACACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTACACCAGCAACCCTCG
* * *
15700875 GTTCGGTCCGATCTTGGACTGGGAATGAACTCTGCATGCCTAGACTAGGG
648 GTTCAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAGACTAGGG
* * * *
15700925 ATGAACTCCGTATACCTGAGTCAATCCACAAAACGAGC
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
15700963 ATGCGGGTTA
Statistics
Matches: 599, Mismatches: 130, Indels: 12
0.81 0.18 0.02
Matches are distributed among these distances:
695 1 0.00
696 176 0.29
697 419 0.70
698 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (697 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGATCGGAGAGG
CAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTACATCCTATCGATCCTACTGCTGGTCCT
ACTGTAGCAAACCTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGG
AATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAATCGACCGGAAAG
GCAGAATGCACAAGCCGAAAACCAGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
CCTCGATCCGGTCTAATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTCAACCAACAAAACGA
GCGTGCAGGCGCTGAACCGACCAGAGAAGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCT
CTATGTGCTACCAGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCGACTAGAGAGGCAGAATA
CACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTACACCAGCAACCCTCGGTT
CAGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAGACTAGGG
Found at i:15701296 original size:26 final size:26
Alignment explanation
Indices: 15701267--15701319 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15701257 CCGGTCTGAT
15701267 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
15701293 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
15701319 C
1 C
15701320 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:15701806 original size:26 final size:26
Alignment explanation
Indices: 15701768--15701820 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15701758 CTGATCTGAT
*
15701768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15701794 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15701820 C
1 C
15701821 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15702859 original size:26 final size:26
Alignment explanation
Indices: 15702830--15702882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15702820 CCGATCTGAT
15702830 CTTAGACT-GTGAATGAAATCCGTATG
1 CTTAGACTAG-GAATGAAATCCGTATG
*
15702856 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
15702882 C
1 C
15702883 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:15704081 original size:158 final size:157
Alignment explanation
Indices: 15703886--15704379 Score: 490
Period size: 158 Copynumber: 3.1 Consensus size: 157
15703876 ACTCCATATG
* * * * ** *
15703886 CTTAGATTGGGGATGAACTCCATTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGT
1 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
* * * *
15703951 CGGTCGGAGAGGTAGAATGCACAAGCCGAGGACCGGCCTGATCTGCCCTGTGTGCTGTCGATCCT
66 CGGTCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCT-CCCTGCGTGCTGTCGATCCT
* *
15704016 ACTACCGCAACCCTCGGTCTGATCCGAT
130 ACTACCGTAACCCTCGGTCTGATCTGAT
* * ** * *
15704044 CTTAGATTGGGAATTAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTTTGGGCACTGACC
1 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
* * * * * * * * *
15704109 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGTTCCCCCTTCGCGTGCT-ACCAGTC
66 CGGTCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCTCCC-T-GCGTGCTGTCGA-TC
* * * * * **
15704173 CCATTGCCATAACCCTCGGTCCGA-CTTGGC
128 CTACTACCGTAACCCTCGGTCTGATC-TGAT
* * * * *
15704203 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGCCACTCAG
1 CTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAG
* * *
15704267 CCGGTCGGAGAGGTAGAATGCACAAGTCGAGGATCGACCCGGTCCTTCCTGCGTGCTGTCGATCC
65 CCGGTCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGAT-CTCCCTGCGTGCTGTCGATCC
* *
15704332 TGCTACCGTAACCCTCGGTCTGGTCTGAT
129 TACTACCGTAACCCTCGGTCTGATCTGAT
*
15704361 CTTAGACTGGGAATGAACT
1 CTTAGATTGGGAATGAACT
15704380 GTGTATGCTT
Statistics
Matches: 261, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 135 0.52
159 118 0.45
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGC
CGGTCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCTCCCTGCGTGCTGTCGATCCTA
CTACCGTAACCCTCGGTCTGATCTGAT
Found at i:15704411 original size:26 final size:26
Alignment explanation
Indices: 15704361--15704411 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15704351 CTGGTCTGAT
* **
15704361 CTTAGACTGGGAATGAACTGTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15704387 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
15704412 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15704755 original size:26 final size:26
Alignment explanation
Indices: 15704726--15704778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15704716 CCGGTCCGAT
*
15704726 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
15704752 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15704778 C
1 C
15704779 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15705109 original size:159 final size:158
Alignment explanation
Indices: 15704751--15705251 Score: 413
Period size: 158 Copynumber: 3.2 Consensus size: 158
15704741 AACTCCGTAT
* * *
15704751 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
15704816 CCGATCGGAGATGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 ACGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCCCTGCGTGCTATCGATCC
* **
15704881 TGCTGCCACAACCCTTGGTTCGGTCCGA
131 CGCTGCCACAACCCTCAGTTCGGTCCGA
* * ** * * * * *
15704909 TCTTAGAC-TGGGAATTAACTCTGTTTACCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
15704973 AACGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTGATCCCCCTCTGTGTGC-AGTTGA
65 AACGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCC-CTGCGTGCTA-TCGA
* *
15705037 TCCCGCTGCCACAACCCTCAGTTCGG-CTGGG
128 TCCCGCTGCCACAACCCTCAGTTCGGTC-CGA
* * * * * * *
15705068 GCTTGGACATGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAA-TAGGTGTGCGAGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * * * * * * **
15705132 ACCGGT-GGAAAGGCAGAATGCGCAAGCTGGGGATCGGTCGGATCCCCCCTACGTGCTGCCGATC
65 AACGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCCCTGCGTGCTATCGATC
** * * * * *
15705196 CTACTGCCGCAATCCTCGGTCCGAT-CGA
130 CCGCTGCCACAACCCTCAGTTCGGTCCGA
* *
15705224 TCTTAGAC-TGGGAATGAACTCTATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
15705252 TTAGATTGGG
Statistics
Matches: 265, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 22 0.08
157 28 0.11
158 129 0.49
159 84 0.32
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
ACGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCAGTTCGGTCCGA
Found at i:15705261 original size:26 final size:26
Alignment explanation
Indices: 15705225--15705277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15705215 TCCGATCGAT
*
15705225 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15705251 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15705277 C
1 C
15705278 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15705972 original size:26 final size:26
Alignment explanation
Indices: 15705934--15705986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15705924 GGCTCAAACT
*
15705934 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15705960 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
15705986 C
1 C
15705987 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15706153 original size:26 final size:26
Alignment explanation
Indices: 15706117--15706169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706107 CTGATTGGAT
*
15706117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15706143 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15706169 C
1 C
15706170 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15706351 original size:26 final size:26
Alignment explanation
Indices: 15706313--15706365 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706303 CTAGTCCAAT
15706313 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
*
15706339 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTACGTATG
15706365 C
1 C
15706366 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:15706471 original size:196 final size:196
Alignment explanation
Indices: 15706115--15706471 Score: 464
Period size: 196 Copynumber: 1.8 Consensus size: 196
15706105 GTCTGATTGG
* * * *
15706115 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * * ** *
15706180 CCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCCGAAAGCGCAAGCTGGGGTTCGGC
66 CAACGAAACGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAAAGCGCAAGCCGAGGACCGAC
* *** *
15706245 CCGATCCCCCCTGCGTGCTACCGGTCCTGCTACTAGTCCTATTATTGCAACCCTCAGTCTAGTCC
131 CCAATCCCCCCTGCAAACTACCGATCCTGCTACTAGTCCTATTATTGCAACCCTCAGTCTAGTCC
15706310 A
196 A
*
15706311 ATCTTAGACTAGGAATGAACTACGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTACGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAA
* * * *
15706375 CCAACGAAATGAGCGTGCGGGTACTCAACCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGACCGA
65 CCAACGAAACGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAAAGCGCAAGCCGAGGACCGA
**
15706440 CCCAATCCCCCCTGCAAACTGTCGATCCTGCT
130 CCCAATCCCCCCTGCAAACTACCGATCCTGCT
15706472 GCTTTAACCC
Statistics
Matches: 134, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
196 133 0.99
197 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (196 bp):
ATCTTAGACTAGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
CAACGAAACGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAAAGCGCAAGCCGAGGACCGAC
CCAATCCCCCCTGCAAACTACCGATCCTGCTACTAGTCCTATTATTGCAACCCTCAGTCTAGTCC
A
Found at i:15706850 original size:26 final size:26
Alignment explanation
Indices: 15706814--15706866 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706804 CTGGTTCGAT
15706814 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15706840 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15706866 C
1 C
15706867 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15708086 original size:26 final size:26
Alignment explanation
Indices: 15708055--15708107 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15708045 CCGGTCCGAT
15708055 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
15708081 CTTAGACATGGAATGAATTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15708107 C
1 C
15708108 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15709322 original size:646 final size:650
Alignment explanation
Indices: 15708080--15709435 Score: 1570
Period size: 646 Copynumber: 2.1 Consensus size: 650
15708070 AACTCCGTAT
* * * * ** * *
15708080 GCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGTGCTTAG
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCACTAAA
* * * * * * *
15708145 CCGGCCGGAGATGCAGAGTGCGCAAGCTGGGGACCAACCCAGTCCCCCCTACGTGCTATCGATCC
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGACCAACCCAGTCCCCCCTACGTGCTATCGATCC
* * * * **
15708210 TGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGACTAGGAATGAACTTTGTATGCCTAAGTCAA
131 TACTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAA
** * *
15708275 CCCACGAAACGAGTGTTCGGGCACTAAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAG
196 CCCACGAAACGAGCATTCGAGCACTAAGCCGACCGGAGAGGCATAATGCACAAGCC---G--CAG
* * * *
15708340 CTCGATCCCTCTCTGCGTGCTACCGATCTCGGTGCCACTACCCTTAGTCCGGCTGGAGCTTAGAG
256 --CGATCCCTCTCTACGTGCTACCGATCTCGGTGCCACAACCCTGAGTCCGGCTGGAGCTTAGAC
*
15708405 ATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGACGATCAGCTGGCCGGG
319 ATGGAATGAACTCCTATGCCTAAGCCAACACATGAAATGGGCGTACGGACGATCAGCTGGCCGGG
* ** * * *
15708470 GAGACAGAATGCGCAAGCCGGGGATCAGCCCAGTCCGGTTACGTGTTGTCAATCCTGCTGCCGCA
384 GAGACAGAATGCGCAAGCCGGGGATCAGCCCAATCCCCTTACGTGCTATCAATCCTGATGCCGCA
* *
15708535 ACCCTCGGTTCAATCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
449 ACCCTCGGTTCAATCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAAC
* * * *
15708600 GAGCGTGCGGGCACTCAGCTAGCCGGAGAGGCCGACCGGAGAGGCATAATGCATAAGTCGAGGAT
514 AAGCATGCGGGCACTCAGCCAGCCGGAGAGGCCGACCGGAGAGGCATAATACATAAGTCGAGGAT
* * *
15708665 CAGCTCGGTCCCCCTCTGCGTGCTGCCGATCCTGCTATTGGTCTTACTGCCACAACCCTCAGTTC
579 CAACCCGGTCCCCCTCTGCGCGCTGCCGATCCTGCTATTGGTCTTACTGCCACAACCCTCAGTTC
15708730 GGTAGGG
644 GGTAGGG
* **
15708737 GCTTAGACATGAAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCACTAAA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCACTAAA
* ** * *
15708802 CCGACCGAAGAGGTAGAATGCACAAGCCGAGGACC-GTCCTGATCCCCTCCTACGTGCTGTCGAT
66 CCGACCGAAGAGGCAGAATGCACAAGCCGAGGACCAACCCAG-TCCCC-CCTACGTGCTATCGAT
* *
15708866 CCTACTGCC-CAACCCTCGGT-CTGATCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGT
129 CCTACTACCGCAACCCTCGGTCCAG-TCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGT
* * * *
15708929 CAACCCATGAAATGAGCATTCGAGCACTGAGCCGACCTGAGAGGCATAATGCACAAGCC-C-G-G
193 CAACCCACGAAACGAGCATTCGAGCACTAAGCCGACCGGAGAGGCATAATGCACAAGCCGCAGCG
* * * * *
15708991 -TCCCTCTCTATGTGCTATCGGTCTCGGTGCCACAACCCTCGA-TCCGGTTGGGGCTTAGACATG
258 ATCCCTCTCTACGTGCTACCGATCTCGGTGCCACAACCCT-GAGTCCGGCTGGAGCTTAGACATG
* ** **
15709054 GAATGAACTCCTATGCCTAAGCCAACATATGAAATGGGCGTGTGGGTGATCAG-TCGGCCGGGGA
322 GAATGAACTCCTATGCCTAAGCCAACACATGAAATGGGCGTACGGACGATCAGCT-GGCCGGGGA
* * * * * *
15709118 GGCAGAATGCGTAAGCTGGGGATC-GACCCAATCCCCTTACGTGCTATCGATCCTGATGCTGTAA
386 GACAGAATGCGCAAGCCGGGGATCAG-CCCAATCCCCTTACGTGCTATCAATCCTGATGCCGCAA
* *
15709182 CCCTCGGTTCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAACA
450 CCCTCGGTTCAATCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACA
* * * * * *
15709247 AGCATGCGGGCGCTTAGCCAGTCGGAGAGGTCGACCGGAGAGGCATAATACGTAAG-CTGGGGAT
515 AGCATGCGGGCACTCAGCCAGCCGGAGAGGCCGACCGGAGAGGCATAATACATAAGTC-GAGGAT
* * *** * * *
15709311 CAACCCGGTCCCCCTCTGCGCGTTGCCGATCCCGCTGCCGGTCCTGCGTGCCACAACCTTCAGTT
579 CAACCCGGTCCCCCTCTGCGCGCTGCCGATCCTGCTATTGGTCTTAC-TGCCACAACCCTCAG--
15709376 CTTCGGCT--GG
641 -TTCGG-TAGGG
* * * *
15709386 GCTTGAGA-ATGAGATGACCTCTGTATGCCTAAGCCAACCCACGATAACGA
1 GCTT-AGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGA-AACGA
15709436 AGTGTGCAGG
Statistics
Matches: 589, Mismatches: 96, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
645 3 0.01
646 308 0.52
647 16 0.03
649 37 0.06
650 14 0.02
651 2 0.00
656 5 0.01
657 182 0.31
658 22 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (650 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACAGGCACTAAA
CCGACCGAAGAGGCAGAATGCACAAGCCGAGGACCAACCCAGTCCCCCCTACGTGCTATCGATCC
TACTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCATTCGAGCACTAAGCCGACCGGAGAGGCATAATGCACAAGCCGCAGCGATC
CCTCTCTACGTGCTACCGATCTCGGTGCCACAACCCTGAGTCCGGCTGGAGCTTAGACATGGAAT
GAACTCCTATGCCTAAGCCAACACATGAAATGGGCGTACGGACGATCAGCTGGCCGGGGAGACAG
AATGCGCAAGCCGGGGATCAGCCCAATCCCCTTACGTGCTATCAATCCTGATGCCGCAACCCTCG
GTTCAATCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACAAGCATG
CGGGCACTCAGCCAGCCGGAGAGGCCGACCGGAGAGGCATAATACATAAGTCGAGGATCAACCCG
GTCCCCCTCTGCGCGCTGCCGATCCTGCTATTGGTCTTACTGCCACAACCCTCAGTTCGGTAGGG
Found at i:15709737 original size:26 final size:26
Alignment explanation
Indices: 15709706--15709757 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15709696 CCGGCTCGAT
*
15709706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15709732 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15709758 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15709953 original size:26 final size:26
Alignment explanation
Indices: 15709902--15709954 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15709892 CCGGTCTGAT
*
15709902 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15709928 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15709954 C
1 C
15709955 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15710037 original size:196 final size:193
Alignment explanation
Indices: 15709686--15710384 Score: 561
Period size: 196 Copynumber: 3.6 Consensus size: 193
15709676 CTGCTACTGC
* *
15709686 AACCTTCACTCCGG-CTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
1 AACC-TCAGTCCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAAC
* * * * * * *** *
15709750 TCCATATGACTAAGTCAACCCACGAAACGAGGGTGCAGGCGCTCA-ACCGGTTAGAGAGGCAGAA
64 TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACCGACCAGAGAGGTAGAA
* * *
15709814 TGTGTAAACCAGGTATCGACTCGATCCCCCCTATGTGCTATCGATCCTGTTGTTGGTCCTACTAC
129 TGTGCAAGCCAGG-ATCGACTCGATCCCCCCTACGTGCT-TCGATCC-GTTGTTGGTCCTACTAC
15709879 CGT
191 CGT
*
15709882 AACACTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
1 AAC-CTCAGTCCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAAC
* * *
15709946 TCCTTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTCAGA-CGACCGGAGAGGTAGA
64 TCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCAGACCGACCAGAGAGGTAGA
* * * * * *
15710009 ATGTACAAGGCGAGGATC-AGCCCGATCCCCCCTGCGTGC-T-G--CC------GATCCTACTGC
128 ATGTGCAA-GCCAGGATCGA-CTCGATCCCCCCTACGTGCTTCGATCCGTTGTTGGTCCTACTAC
*
15710063 CGC
191 CGT
* ** * *
15710066 AACCCTCAATTTGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAAC
1 AA-CCTCAGTCCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GAATGAAC
* * * * *
15710130 TCCGTATGCCTAAGTCAACCCCATGAAATGAGCTTACGGGCGCTCAATCGATCGGAAAGGCTGGT
64 TCCGTATGCCTAAGCCAA-CCCACGAAATGAGCGTGCGGGCGCTC-A--GA-CCG--A--C----
* *
15710195 CAGAGAGGTATAATGTGCAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCCGTTG
116 CAGAGAGGTAGAATGTGCAAGCCA-GGATCGACTCGATCCCCCCTACGTGCT-TCGAT-CCGTTG
15710260 TTGGTCCTACTACCGT
178 TTGGTCCTACTACCGT
* * * * * *
15710276 AAGCCTCGGTCTGATCT-GATCTTAGACAGGGAATGAACTCTGTATGCTTGGACATGGAATGAAC
1 AA-CCTCAGTCCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAAC
* * * * *
15710340 TCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGTGGGTGCTCA
64 TCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
15710385 TCTGGTCGGA
Statistics
Matches: 397, Mismatches: 65, Indels: 70
0.75 0.12 0.13
Matches are distributed among these distances:
183 3 0.01
184 78 0.20
185 21 0.05
186 2 0.01
188 2 0.01
190 1 0.00
191 2 0.01
192 1 0.00
193 1 0.00
194 2 0.01
195 2 0.01
196 126 0.32
197 12 0.03
198 38 0.10
199 1 0.00
200 1 0.00
201 1 0.00
204 2 0.01
208 1 0.00
209 20 0.05
210 77 0.19
211 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (193 bp):
AACCTCAGTCCGGTCTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTC
CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACCGACCAGAGAGGTAGAATG
TGCAAGCCAGGATCGACTCGATCCCCCCTACGTGCTTCGATCCGTTGTTGGTCCTACTACCGT
Found at i:15710127 original size:26 final size:26
Alignment explanation
Indices: 15710086--15710138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15710076 TTGGTTCGAT
15710086 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15710112 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
15710138 C
1 C
15710139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15710483 original size:394 final size:380
Alignment explanation
Indices: 15709701--15710499 Score: 921
Period size: 394 Copynumber: 2.1 Consensus size: 380
15709691 TCACTCCGGC
* *
15709701 TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGACTAAGTC
1 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCATATGACTAAGTC
* * * *
15709766 AACCCACGAAACGAGGGTGCAGGCGCTCAACCGGTTAGAGAGGCAGAATGTGTAAACCAGGTATC
66 AACCCACGAAACGAGCGTACAGGCGCTCAACCGGTTAGAGAGGCAGAATGTGCAAACCAGGGATC
* * *
15709831 GACTCGATCCCCCCTATGTGCTATCGATCCTGTTGTTGGTCCTACTACCGTAACACTCAGTCCGG
131 GACTCGATCCCCCCTACGTGCTATCGATCCCGTTGTTGGTCCTACTACCGTAACACTCAGTCCGA
* *
15709896 TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCTTATGCCTAAGC
196 TCTGATCTTAGACAGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
15709961 CAACCCACGAAATGGACGTGCGGGTGCTCAGACGACCGGAGAGGTAGAATGTACAAGGCGAGGAT
261 CAACCCACGAAACGGACGTGCGGGTGCTCAGACGACCGGAGAGGCAGAATGCACAAGGCGAGGAT
* * * **
15710026 CAGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAATTTGGT
326 CAGCCCGATCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCTCAATTCAGT
* *
15710081 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTC
1 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCATATGACTAAGTC
* * * * * *
15710146 AACCCCATGAAATGAGCTTACGGGCGCTCAATCGATCGGAAAGGCTGGTCAGAGAGGTATAATGT
66 AA-CCCACGAAACGAGCGTACAGGCGCTCAA-C---C-----GG-T--T-AGAGAGGCAGAATGT
* * *
15710211 GCAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCCGTTGTTGGTCCTACTACCGT
117 GCAAACCAGGGATCGACTCGATCCCCCCTACGTGCTATCGATCCCGTTGTTGGTCCTACTACCGT
* * *
15710276 AAGC-CTCGGTCTGATCTGATCTTAGACAGGGAATGAAC-TCTGTATGCTTGGACATGGAATGAA
182 AA-CACTCAGTCCGATCTGATCTTAGACAGGGAATGAACTTC-GTATGCTTAGACATGGAATGAA
* * * * **
15710339 CTCCGTATGCCTAAGCCAACCTATGAAAC-GAGCGTGTGGGTGCTCA-TCTGGTCGGAGAGGCAG
245 CTCCGTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGTGCTCAGAC-GACCGGAGAGGCAG
* * * * * * *
15710402 AATGCGCAA-GCTGGGGATC-GGCCGGTGCACCCTACGTGCTATCGATCCTACTGTCGCAACCCT
308 AATGCACAAGGC-GAGGATCAGCCCGATCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCT
*
15710465 C-GTGTCCAG-
372 CAAT-T-CAGT
15710474 TCTGATCTTAGACTGGGAATGAACTC
1 TC-GATCTTAGACTGGGAATGAACTC
15710500 TGTATGCCTA
Statistics
Matches: 350, Mismatches: 47, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
380 63 0.18
381 22 0.06
382 1 0.00
385 1 0.00
390 2 0.01
391 1 0.00
392 1 0.00
393 48 0.14
394 210 0.60
395 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.23
Consensus pattern (380 bp):
TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCATATGACTAAGTC
AACCCACGAAACGAGCGTACAGGCGCTCAACCGGTTAGAGAGGCAGAATGTGCAAACCAGGGATC
GACTCGATCCCCCCTACGTGCTATCGATCCCGTTGTTGGTCCTACTACCGTAACACTCAGTCCGA
TCTGATCTTAGACAGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGGACGTGCGGGTGCTCAGACGACCGGAGAGGCAGAATGCACAAGGCGAGGAT
CAGCCCGATCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCTCAATTCAGT
Found at i:15711845 original size:26 final size:26
Alignment explanation
Indices: 15711816--15711868 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15711806 CCGATTCGAT
15711816 CTTAGACTG-GTAATGAACTCCGTATG
1 CTTAGACTGAG-AATGAACTCCGTATG
*
15711842 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15711868 C
1 C
15711869 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15712232 original size:26 final size:26
Alignment explanation
Indices: 15712181--15712233 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15712171 CCGATTTGAT
*
15712181 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
*
15712207 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGA-ATGGGAATGAACTCCATATG
15712233 C
1 C
15712234 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:15713883 original size:26 final size:26
Alignment explanation
Indices: 15713847--15713899 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15713837 CTAGTCCGAT
15713847 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15713873 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15713899 C
1 C
15713900 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15714079 original size:26 final size:26
Alignment explanation
Indices: 15714043--15714095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714033 TCGGTTCGAT
15714043 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
*
15714069 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
15714095 C
1 C
15714096 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:15714412 original size:26 final size:26
Alignment explanation
Indices: 15714383--15714435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714373 CCAGTTTGAT
15714383 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* * *
15714409 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15714435 C
1 C
15714436 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15715897 original size:351 final size:350
Alignment explanation
Indices: 15715229--15715899 Score: 766
Period size: 351 Copynumber: 1.9 Consensus size: 350
15715219 CTTACTGTCG
* ** *
15715229 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGTTGAGC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
15715294 TTTGTATGCCCAAGCCAACCAACGAAACGAGTGTGCGGGCGCTCAGCCGGTTGGAAAGGCTGAAT
66 TTTGTATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGATCGAAAGGCAGAAT
** * * *
15715359 GCGTAAGTCGGGGACCGACCCGATCCCCCTATGTGCTATCGATCCTGCCGCTGAAACCCTCGGTT
131 GCACAAGTCGGGGACAGACCCGATCCCCCTATGT-CTATCCATCCTGCAGCTGAAACCCTCGGTT
* * * * * *
15715424 GGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAATCCATGAAATGAGCATTCGG
195 GGGTCCGATCTTAAACTGGGAATGAACTCCATATGCTGAAGTCAACCCACGAAATGAGCATTCAG
** * * * * * *
15715489 GCGTTGAGCCGACCGGAGAGGCATAATGCGTAAGCCAATGATCGACCCGGTTCCTCCTGTGCTGT
260 GCACTAAGCAGACCGGAGAGACATAATGCGCAAGCCAAGGATCGACCCAGTTCCTCCTGTGCTGT
15715554 CGATCCTTCTACTGGTCCTACTGCCA
325 CGATCCTTCTACTGGTCCTACTGCCA
* * *
15715580 CAACCCTCGGTCCGGTCTGATCTTAGGCTGGGAAAGAACTCTGTATGCTTAGACAT-GGAATGAA
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGAC-TGGGAATGAA
*
15715644 CTTTGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCC-GATCGAAGAGGCAGA
65 CTTTGTATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGATCGAA-AGGCAGA
* * *** * * *
15715708 ATGCACAAGTCGGGGATAGCCCCGATTTGTCCTGCATGT-TGTCCATCCTGCTATC-GTAACCCT
129 ATGCACAAGTCGGGGACAGACCCGA-TCCCCCT--ATGTCTATCCATCCTGC-AGCTGAAACCCT
* * *
15715771 TGGTCT-GGTTCGATCTTAAACTGGGAATGAACTCCATATGCCT-AAGTTAACCCACGAAATGAG
190 CGGT-TGGGTCCGATCTTAAACTGGGAATGAACTCCATATG-CTGAAGTCAACCCACGAAATGAG
* * **
15715834 CGTTCAGGCACTAAGTCAG-CCGGAGAGACGTAATGCGCAAGCCGGGGATC-AGCCCAG-TCCTC
253 CATTCAGGCACTAAG-CAGACCGGAGAGACATAATGCGCAAGCCAAGGATCGA-CCCAGTTCCTC
15715896 CTGT
316 CTGT
15715900 ACGTGCTGCC
Statistics
Matches: 264, Mismatches: 46, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
350 5 0.02
351 138 0.52
352 111 0.42
353 6 0.02
354 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (350 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAAC
TTTGTATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGATCGAAAGGCAGAAT
GCACAAGTCGGGGACAGACCCGATCCCCCTATGTCTATCCATCCTGCAGCTGAAACCCTCGGTTG
GGTCCGATCTTAAACTGGGAATGAACTCCATATGCTGAAGTCAACCCACGAAATGAGCATTCAGG
CACTAAGCAGACCGGAGAGACATAATGCGCAAGCCAAGGATCGACCCAGTTCCTCCTGTGCTGTC
GATCCTTCTACTGGTCCTACTGCCA
Found at i:15716153 original size:26 final size:26
Alignment explanation
Indices: 15716102--15716154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716092 CCAGTCCAAT
*
15716102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15716128 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15716154 C
1 C
15716155 CTAAATTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15716434 original size:26 final size:26
Alignment explanation
Indices: 15716405--15716457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716395 CCGATCCGAT
15716405 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15716431 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15716457 C
1 C
15716458 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15716725 original size:26 final size:26
Alignment explanation
Indices: 15716696--15716748 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716686 CCGATTCGAT
*
15716696 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
** *
15716722 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
15716748 C
1 C
15716749 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:15717184 original size:158 final size:158
Alignment explanation
Indices: 15717020--15717419 Score: 410
Period size: 159 Copynumber: 2.5 Consensus size: 158
15717010 GGGGAACGGC
** * *
15717020 CCGGTCCCCCCTATGTGCTATCGATCCTGCTACTGTAACCCTCGATCCGGTTTGATCTTAGACTG
1 CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCGGTTTGATCTTAGACTG
* * * * * * * * *
15717085 GGAATAAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGTTGAGCCAACTGGAG
66 GGAATGAACTCCATATGCCGAAGCCAAACCATGAAATGAGCGTGCGGGTGCTCAACCAACCGGAG
* *
15717150 AGGCATAATGCGCAAGTCGAGGATCG-A
131 AGGCAGAATGCGCAAGTCAAGGATCGAA
* * * ** * ** * **
15717177 CTCGGTCCCCCTCTGCGTACTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGAC
1 C-CGGTCCCCC-CTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCGGTTTGATCTTAGAC
* * * *
15717242 AT-GAAATGAACTCCCTATGCCGAAGCCAAACCATGAAATGGGCGTGCGGGTGCTCAACCGACCG
64 -TGGGAATGAACTCCATATGCCGAAGCCAAACCATGAAATGAGCGTGCGGGTGCTCAACCAACCG
15717306 GAGAGGCAGAATGCGCAAGTCAAGGATCGAA
128 GAGAGGCAGAATGCGCAAGTCAAGGATCGAA
* * * * * *
15717337 CCGGTCCCCCCTGCGTGTTGTCGATCCTGCT-GTCGCAACCCTCGATCTGGTCTGCTCTTAGATT
1 CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACT-GCAACCCTCGATCCGGTTTGATCTTAGACT
*
15717401 GGGAATGAACTCCGTATGC
65 GGGAATGAACTCCATATGC
15717420 TTAGACTGGG
Statistics
Matches: 189, Mismatches: 48, Indels: 11
0.76 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 61 0.32
159 123 0.65
160 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (158 bp):
CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCGGTTTGATCTTAGACTG
GGAATGAACTCCATATGCCGAAGCCAAACCATGAAATGAGCGTGCGGGTGCTCAACCAACCGGAG
AGGCAGAATGCGCAAGTCAAGGATCGAA
Found at i:15717429 original size:26 final size:26
Alignment explanation
Indices: 15717393--15717445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15717383 CTGGTCTGCT
*
15717393 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15717419 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15717445 C
1 C
15717446 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15717618 original size:26 final size:26
Alignment explanation
Indices: 15717589--15717670 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
15717579 CCGGTCCGAT
15717589 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACATGGG-ATGAACTCCGTATG
15717615 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGGATGAACTCCGTATG
*
15717641 CTTAGACATGGGATGAACTCCATATG
1 CTTAGACATGGGATGAACTCCGTATG
15717667 CTTA
1 CTTA
15717671 AGCCAAAGCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 50 0.93
27 4 0.07
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGGATGAACTCCGTATG
Found at i:15718244 original size:338 final size:339
Alignment explanation
Indices: 15717627--15718448 Score: 971
Period size: 339 Copynumber: 2.4 Consensus size: 339
15717617 TAGACATGGG
* *
15717627 ATGAACTCCGTATGCTTAGACATGGGATGAACTCCATATGCTTAAGCCAA-AGCACGAAACGAAC
1 ATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACA-CACGAAACGAAC
* * * * * * *
15717691 GTGCAGGC-TCTCAGTAGGTTGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGGTCCCACCC
65 GTGCGGGCGT-TCAGTCGGTTGGAGAGGCAGAATGCACAAGCCGGGGACCAGCCAGGTCCC-CTC
* * * * * *
15717755 TCCGTGCTATCGATCTTACTGTGACAACAGTCGGTCTAGCTGGGGCTTAGACATGGGATGAACTC
128 TACGTGCTGTCGATCCTACTGTGACAACACTCGATCTAGCTGGGGCTTAGACATGGAATGAACTC
* * *
15717820 CCTATGAAGCCAACCCACGAAACGGGCATGCGAGTGCTCAGTCGGCCGGAGAGGCAGAATGCGTA
193 CCTATGAAGCCAACCCACGAAACAGGCATGCGAGTGCTCAGTCGGCCGAAGAGGCAGAATGCGCA
* * * *
15717885 AGCTGGGGATCGGCTCGGT-CCCCCTACGTGTTATCGATCCTGT-T-GTGGCAACCCTCGGTCCG
258 AGCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCT-TCTAGT-GCAACCCTCGATCCG
* *
15717947 GTCCGATCTTAGATTGGGA
321 ATCCGATCTTAGACTGGGA
* *
15717966 ATGAACTCCGTATGCTTAGACATGTGATGAACTCCGTATGCCTAAGCCAACACACGAAATGAACG
1 ATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACACACGAAACGAACG
* *
15718031 TGCGGGCGTTCAGTCGGTTGAAGAGGCAGAATGCACAAGCCGGGGACCAGCCAGGTCCCCTCTGC
66 TGCGGGCGTTCAGTCGGTTGGAGAGGCAGAATGCACAAGCCGGGGACCAGCCAGGTCCCCTCTAC
** * *
15718096 GTGCTGTCGATCCTGTTGTGACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCT
131 GTGCTGTCGATCCTACTGTGACAACACTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCT
** * * *
15718161 ATGAAGCCAACCCACGAAACAGGTGTGC-AG-GCGTTCAGTCGGCCTAAGAGGTAGAATGCGCAT
196 ATGAAGCCAACCCACGAAACAGGCATGCGAGTGC--TCAGTCGGCCGAAGAGGCAGAATGCGCAA
** * * *
15718224 GCTGGGGATCGACCCGGTCCCCCCTGGGTGCTGTTGATCCTTCTAGTGCAACCTTCGATCCGATC
259 GCTGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTTCTAGTGCAACCCTCGATCCGATC
15718289 CGATCTTAGACTGGGA
324 CGATCTTAGACTGGGA
* ** * * *
15718305 ATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAATTCAACCCACAAAACGAGC
1 ATGAACTCCGTATGCTTAGACAT-GGGATGAACTCCGTATGCCTAAGCCAACACACGAAACGAAC
* * * * * * * *
15718369 GTGCGGGCGCTCAGCCAGTCGGAGAGGCATAATG-AGCAAGCCGAGGATCAGCCCA-ATCCCCCT
65 GTGCGGGCGTTCAGTCGGTTGGAGAGGCAGAATGCA-CAAGCCGGGGACCAG-CCAGGT-CCCCT
15718432 CTACGTGCTGTCGATCC
127 CTACGTGCTGTCGATCC
15718449 CGCTGTCGAT
Statistics
Matches: 413, Mismatches: 59, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
336 2 0.00
337 2 0.00
338 128 0.31
339 253 0.61
340 28 0.07
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (339 bp):
ATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACACACGAAACGAACG
TGCGGGCGTTCAGTCGGTTGGAGAGGCAGAATGCACAAGCCGGGGACCAGCCAGGTCCCCTCTAC
GTGCTGTCGATCCTACTGTGACAACACTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCT
ATGAAGCCAACCCACGAAACAGGCATGCGAGTGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGC
TGGGGATCGACCCGGTCCCCCCTACGTGCTATCGATCCTTCTAGTGCAACCCTCGATCCGATCCG
ATCTTAGACTGGGA
Found at i:15718329 original size:26 final size:26
Alignment explanation
Indices: 15718293--15718345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15718283 CCGATCCGAT
*
15718293 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15718319 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15718345 C
1 C
15718346 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15718851 original size:159 final size:157
Alignment explanation
Indices: 15718450--15718917 Score: 500
Period size: 157 Copynumber: 3.0 Consensus size: 157
15718440 TGTCGATCCC
*
15718450 GCTGTCGATCCTACTACCACAACCCTCGGT-TCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
1 GCTGTCGATCCTGCTACCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCGTA
*
15718514 TGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCATGAAATGACCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAA
*
15718579 GCCGAGGATCGGCCCGATCCTCCTACGT
130 GCCGAGGATCGGCCCGATCCCCCTACGT
* * * * * ** *
15718607 GTTGTCGATCCTGCTACCATAACCCTCAGTCCAGTCT-GATCTTAGAC-TGGGTATGAACTCCGT
1 GCTGTCGATCCTGCTACCACAACCCTCGGT-CTGGCTGGGGCTTAGACAT-GGAATGAACTCCGT
* * * * * * * **
15718670 ATGCCTAAGTCAACCCATGAAATGACCGTTCGTGTGCTGAGCCGGTCGGAGAGGCATAATTTGCA
64 ATGCCTAAGCCAACCCATGAAATGACCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCA
* *
15718735 AGCTGGGGATCGGCCCGATCCCCCTCTACGT
129 AGCCGAGGATCGGCCCGAT-CCCC-CTACGT
* *
15718766 GCTGTTCG-T-CTCGCTGCCACAACCCTCGGTCTGGCTGGGGATTAGACATGGAATGAACTCC-T
1 GCTG-TCGATCCT-GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
* ** * * * * * *
15718828 AATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGCC-AGCAGGAGAGGTAGAATACA
64 -ATGCCTAAGCCAACCCATGAAATGACCGTGCGGGCGCTCAGCCGATC-GGAGAGGCAGAATGCG
*
15718892 CAAGCCGAGGATCTGCCCGATCCCCC
127 CAAGCCGAGGATCGGCCCGATCCCCC
15718918 ATGCGTATTG
Statistics
Matches: 248, Mismatches: 52, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 120 0.48
158 18 0.07
159 105 0.42
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTGTCGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAATGACCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAG
CCGAGGATCGGCCCGATCCCCCTACGT
Found at i:15718904 original size:316 final size:323
Alignment explanation
Indices: 15718319--15718990 Score: 833
Period size: 316 Copynumber: 2.1 Consensus size: 323
15718309 ACTCTGTATG
* * *
15718319 CTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGACCGTGCGGGCGCTCAGC
15718384 CAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCC
66 CAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTGT--AT--
*
15718449 CGCTGTCGATCCTACTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
127 C-CTGTC-ATCCTACTACCACAACCCTCGGTTCGGCTGGGGATTAGACATGGAATGAACTCCGTA
* * * * * *
15718514 TGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAA
190 TGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGAGCGGAGAGGCAGAATACACAA
* * * *
15718579 GCCGAGGATCGGCCCGATCCTCC-TACGTGTTGTCGATCCTGCTACCATAACCCTCAGTCCAGTC
255 GCCGAGGATCGGCCCGATCCCCCATACGTATTGTCAATCATGCTACCATAACCCTCAGTCCAGTC
15718643 TGAT
320 TGAT
* ** * * * * *
15718647 CTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGTTCGTGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGACCGTGCGGGCGCTCAGC
* ** * * * *
15718712 CGGTCGGAGAGGCATAATTTGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTGT-T-C-G
66 CAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTGTATCCTG
* *
15718774 TC-T-C-GCTGCCACAACCCTCGG-TCTGGCTGGGGATTAGACATGGAATGAACTCC-TAATGCC
131 TCATCCTACTACCACAACCCTCGGTTC-GGCTGGGGATTAGACATGGAATGAACTCCGT-ATGCC
* *
15718834 TAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGCC-AGCAGGAGAGGTAGAATACACAAGCC
194 TAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGAGC-GGAGAGGCAGAATACACAAGCC
* * * * * * *
15718898 GAGGATCTGCCCGATCCCCCATGCGTATTGTCAATCATGCTGCCGTAACCCTCGGTTCATTCTGA
258 GAGGATCGGCCCGATCCCCCATACGTATTGTCAATCATGCTACCATAACCCTCAGTCCAGTCTGA
15718963 T
323 T
15718964 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15718991 TCAGACTGGG
Statistics
Matches: 300, Mismatches: 40, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
315 5 0.02
316 119 0.40
317 63 0.21
318 1 0.00
320 3 0.01
321 1 0.00
325 1 0.00
328 107 0.36
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (323 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGACCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTGTATCCTG
TCATCCTACTACCACAACCCTCGGTTCGGCTGGGGATTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGAGCGGAGAGGCAGAATACACAAGCCGAG
GATCGGCCCGATCCCCCATACGTATTGTCAATCATGCTACCATAACCCTCAGTCCAGTCTGAT
Found at i:15719005 original size:26 final size:26
Alignment explanation
Indices: 15718967--15719016 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15718957 TTCTGATCTT
15718967 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
15718993 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15719017 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:15719672 original size:26 final size:26
Alignment explanation
Indices: 15719632--15719683 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15719622 TGGTTCAATG
* *
15719632 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
*
15719658 TTAGACTGGGGATGAAATCCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
15719684 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:15719681 original size:667 final size:661
Alignment explanation
Indices: 15718291--15719755 Score: 1572
Period size: 667 Copynumber: 2.2 Consensus size: 661
15718281 ATCCGATCCG
*
15718291 ATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAA
1 ATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
15718355 CCCACAAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAG
65 CCCACGAAACGAGCATGCGGGCGCTCAGCCAGTCAGAGAGGCAAAATGAGCAAGCCGAGGATCAG
* * * **
15718420 CCCAATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGATCCTACTACCACAACCCTCGGTTCGGC
130 CCCAATCCCCCTCTACGTGCTGTCGATCCCACTGTCGATCCTACTACCACAACACTCGGTCCAAC
* * *
15718485 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGC
195 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCAC
* * * *
15718550 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCTCCTACGTGTTGTCGA
260 CCAGCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCTCC-AC------TCGA
* * *
15718615 TCCTGCTACCATAACCCTCAGTCCAGTCTGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGT
318 TCCTGCTACCA-AACCCT-AGT-CAGTCTGATCCTAGACTGGGAATGAACTCCGCATGCCTAAGT
* * * * ** **
15718680 CAACCCATGAAATGACCGTTCGTGTGCTGAGCCGGTCGGAGAGGCATAATTTGCAAGCTGGGGAT
380 CAACCCACGAAATGACCGTTCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCGCAAGCTGGGGAT
* ** * **
15718745 CGGCCCGATCCCCCTCTACGTGCTGTTCGTCTCGCTGCCACAACCCTCGGTCTGGCTGGGGATTA
445 CGGCCCAATCCCCCTCTACGTGCTGACCGTCTCGCTACCACAACCCTCGGTCTAACTGGGGATTA
* * *
15718810 GACATGGAATGAACTCCTAATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGCCAGC
510 GACATGGAATGAACTCCTAATGCCTAAGCCAAACCACGAAATAGGCATGCAGGCACTCAGCCAGC
* * * * *
15718875 AGGAGAGGTAGAATACACAAGCCGAGGATCTGCCCGATCCCCCATGCGTATTGTCAATCATGCTG
575 AGGAGAGGCAGAATACACAAGCCAAGGATCGGCCCGATCCCCCATGCGTACTGCCAATCATGCTG
** * * *
15718940 CCGTAACCCTCGGTTCATTCTG
640 CCACAACCCTAGATTCATTCTA
* *
15718962 ATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* *
15719027 CCACGAAACGAGCATGCGGGCGCTCAACCGGTCGGAGTGGCTAGTCAGAGAGGCAAAATGCGTAA
66 CCACGAAACGAGCATGCGGGCGCTC-A---G-C-------C-AGTCAGAGAGGCAAAATGAGCAA
* * * *
15719092 GCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTCGATCCCACTG-CTGGTCCTGCTACCACAA
118 GCCGAGGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCCCACTGTC-GATCCTACTACCACAA
15719155 CACTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
182 CACTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
* * * *
15719220 AGCATGCGGGCACCCAGTCGACCGAAGAGGTAGAATACGCAAGTCGGGGATCGGCCC-AGTCC-C
247 AGCATGCGGGCACCCAGCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGA-TCCTC
* * * * *
15719283 C-C-CTAT-GTGCTACC-AATCCT-GT-TGT-TGGTCCT-GCTACTGGGAATGAACTCCGCATGC
311 CACTCGATCCTGCTACCAAACCCTAGTCAGTCTGATCCTAG--ACTGGGAATGAACTCCGCATGC
* *
15719340 CTAAGTCAACCCACGAAATGAGCGTGT-GGGCGCTGAGCCGGCCAAAGAGGCATAATGCGTAAGC
374 CTAAGTCAACCCACGAAATGACCGT-TCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCGCAAGC
* *
15719404 TGGGGATTGGCCCAATCCCCCTC-AGCGTGCT-ACCGGTC-CTGCTACCACAATCCTCGGT-TCA
438 TGGGGATCGGCCCAATCCCCCTCTA-CGTGCTGACC-GTCTC-GCTACCACAACCCTCGGTCT-A
* *
15719465 ACTGGGGGCTTAGACATGGAATGAACTCCCT-ATGCCTAAGCCAAACCATGAAATAGGCATG-AG
499 ACT-GGGGATTAGACATGGAATGAACT-CCTAATGCCTAAGCCAAACCACGAAATAGGCATGCAG
*** * * * *
15719528 AGCACTCAGCCAGCCA-GAGAGGCAGAATGTGCAAGCCAAGGATCGGCTCGGTCCCCCCTGCGTG
562 -GCACTCAGCCAG-CAGGAGAGGCAGAATACACAAGCCAAGGATCGGCCCGATCCCCCATGCGTA
* * **
15719592 CTGCCTATCCTGCTGCCACAACCCTAGATCTGGTTC-A
625 CTGCCAATCATGCTGCCACAACCCTAGAT-TCATTCTA
* *
15719629 ATGTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAATCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * ** * ** * *
15719694 CCATGAAATGAGCGTGCAGATGCTCAGCC-GACCAGAGAGGCAGGATGCGCAAGCCGGGGATC
66 CCACGAAACGAGCATGCGGGCGCTCAGCCAG-TCAGAGAGGCAAAATGAGCAAGCCGAGGATC
15719756 GAACGGGTGG
Statistics
Matches: 670, Mismatches: 95, Indels: 75
0.80 0.11 0.09
Matches are distributed among these distances:
653 1 0.00
654 27 0.04
655 1 0.00
662 1 0.00
663 1 0.00
664 1 0.00
665 9 0.01
666 125 0.19
667 200 0.30
668 11 0.02
670 5 0.01
671 83 0.12
672 9 0.01
673 3 0.00
675 1 0.00
676 1 0.00
680 1 0.00
682 4 0.01
683 146 0.22
684 40 0.06
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (661 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCATGCGGGCGCTCAGCCAGTCAGAGAGGCAAAATGAGCAAGCCGAGGATCAGC
CCAATCCCCCTCTACGTGCTGTCGATCCCACTGTCGATCCTACTACCACAACACTCGGTCCAACT
GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACC
CAGCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCTCCACTCGATCCTGCTA
CCAAACCCTAGTCAGTCTGATCCTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAA
ATGACCGTTCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCAATCC
CCCTCTACGTGCTGACCGTCTCGCTACCACAACCCTCGGTCTAACTGGGGATTAGACATGGAATG
AACTCCTAATGCCTAAGCCAAACCACGAAATAGGCATGCAGGCACTCAGCCAGCAGGAGAGGCAG
AATACACAAGCCAAGGATCGGCCCGATCCCCCATGCGTACTGCCAATCATGCTGCCACAACCCTA
GATTCATTCTA
Found at i:15720711 original size:26 final size:26
Alignment explanation
Indices: 15720675--15720726 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720665 CCAGTTACAT
15720675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15720701 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15720727 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15720923 original size:26 final size:26
Alignment explanation
Indices: 15720872--15720924 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720862 CCGGTCCGAT
*
15720872 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15720898 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
15720924 C
1 C
15720925 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15721196 original size:158 final size:158
Alignment explanation
Indices: 15720897--15721265 Score: 384
Period size: 158 Copynumber: 2.3 Consensus size: 158
15720887 AACTCCGTAT
* * **
15720897 GCTTAGACATGGAATGAACTCTATATGCCTAAGCTAACCCACGAAATGAGCGTGTGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCGAACCCACGAAATGAGCGTGTGGGCACTCAA
* * * **
15720962 CCGGCTTGTGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCACCCTGCATGCTGTCGATCC
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCACCCTGCATGCTACCGATCC
** *
15721027 TGCTACTACAACCCTCGGTCTGATCCGA
131 CACTACCACAACCCTCGGTCTGATCCGA
* * * *
15721055 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATGAGCGTTTGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CGAACCCACGAAATGAGCGTGTGGGCACTC
* * * * * * ***
15721118 AGCCGG-TGGAGAGGCATAATGCGTAAGCCAAGGATCGACCCGGTCCCCCTCTTTGTGCTACCGA
64 AACCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCACC-CTGCATGCTACCGA
* * * ** *
15721182 TCCCACTGCCACAACCTTCGGTCTGGTTGGG
128 TCCCACTACCACAACCCTCGGTCTGATCCGA
* * *
15721213 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACTCACGAAATGGGCGT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCGAACCCACGAAATGAGCGT
15721266 ACGGGAGCTC
Statistics
Matches: 172, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 37 0.22
158 133 0.77
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCGAACCCACGAAATGAGCGTGTGGGCACTCAA
CCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCACCCTGCATGCTACCGATCC
CACTACCACAACCCTCGGTCTGATCCGA
Found at i:15721800 original size:26 final size:26
Alignment explanation
Indices: 15721751--15721802 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15721741 CCGCTCCGAT
**
15721751 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15721777 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
15721803 GTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15722721 original size:26 final size:26
Alignment explanation
Indices: 15722669--15722721 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722659 GGCTGAAACT
* *
15722669 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
15722695 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCACATG
15722721 C
1 C
15722722 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:15722890 original size:26 final size:26
Alignment explanation
Indices: 15722854--15722906 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722844 CTGGTCTTGT
15722854 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15722880 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15722906 C
1 C
15722907 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15723505 original size:11 final size:11
Alignment explanation
Indices: 15723485--15723517 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15723475 CGATTAGGCT
15723485 CTCTGACGATG
1 CTCTGACGATG
*
15723496 CTCTGGCGATG
1 CTCTGACGATG
15723507 CTCTGACGATG
1 CTCTGACGATG
15723518 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.27
Consensus pattern (11 bp):
CTCTGACGATG
Found at i:15724679 original size:26 final size:26
Alignment explanation
Indices: 15724641--15724693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15724631 GGCTTAAACT
15724641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15724667 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15724693 C
1 C
15724694 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15726852 original size:26 final size:26
Alignment explanation
Indices: 15726801--15726853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15726791 CTGGTCTGAT
**
15726801 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15726827 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15726853 C
1 C
15726854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15727562 original size:26 final size:26
Alignment explanation
Indices: 15727524--15727576 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727514 GGCTCAAAAT
15727524 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15727550 CTTAGACCT-GGAATGAACTCCGTATG
1 CTTAGA-CTGGGAATGAACTCCGTATG
15727576 C
1 C
15727577 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15727759 original size:26 final size:26
Alignment explanation
Indices: 15727721--15727776 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15727711 TCGGTCTGAT
*
15727721 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCCTATC
*
15727747 CTTAGAC-ATGGAATGAACTCCCTATG
1 CTTAGACTA-GGAATGAACTCCCTATC
15727773 CTTA
1 CTTA
15727777 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATC
Found at i:15728101 original size:159 final size:158
Alignment explanation
Indices: 15727747--15728116 Score: 357
Period size: 158 Copynumber: 2.3 Consensus size: 158
15727737 ACTCCGTATC
* * * * *
15727747 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAACGTGCGGGTGCTTAGC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTGAGC
* * * * ** *
15727812 TGGCCAGAGAGACAGAATGTGCAAGCCGGGGACCGACCCAATCCCCTCTGTGTGTTGTCAATCCT
66 CGGCCAGAGAGACAGAATGCGCAAGCCGAGGACCGACCCAATCCCCTCTGCGTACTGCCAATCCT
* * ** * * * *
15727877 GCTGTCGCAACCCTCGATTCGGTTCGAT
131 GCTGCCACAACCCTCGACCCAGCTAGAG
* * * * * *
15727905 CTTAGAC-TAGGAATAAACTCTGTTTACCTAAGTCAACCAACGAAACGAGCGTGCAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTGAG
* * * * * *
15727969 CCGGCC-GAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCAATCCCTCTCTGCGTACTGCCAGT
65 CCGGCCAG-AGAGACAGAATGCGCAAGCCGAGGACCGACCCAATCCC-CTCTGCGTACTGCCAAT
* * *
15728033 CCTGCTGCCACAACGCTCGGCCCAGCTAGGG
128 CCTGCTGCCACAACCCTCGACCCAGCTAGAG
* * *
15728064 CTTTGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACAAAACGGGCGTG
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTG
15728117 TGGGAGCTCA
Statistics
Matches: 164, Mismatches: 44, Indels: 7
0.76 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 87 0.53
159 74 0.45
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTGAGC
CGGCCAGAGAGACAGAATGCGCAAGCCGAGGACCGACCCAATCCCCTCTGCGTACTGCCAATCCT
GCTGCCACAACCCTCGACCCAGCTAGAG
Found at i:15728259 original size:26 final size:26
Alignment explanation
Indices: 15728221--15728270 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15728211 CTGGTCTGAT
*
15728221 CTTAGACAGGGAATGCACTCCGTACG
1 CTTAGACAGGGAATGAACTCCGTACG
*
15728247 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
15728271 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTACG
Found at i:15728638 original size:340 final size:339
Alignment explanation
Indices: 15727905--15728640 Score: 798
Period size: 342 Copynumber: 2.2 Consensus size: 339
15727895 TCGGTTCGAT
* * * * **
15727905 CTTAGACTAGGAATAAACTCTGTTTACCTAAGTCAACCAACGAAACGAGCGTGCAGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* * *
15727970 CGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCAATCCCTCTCTGCGTACTGCCAGTCC
65 CGGCCGAAGAGGCATAATGCGAAAGTCGAGGATCGGCCCAATCCCCCTCTACGTACTGCCAGTCC
* * *
15728035 TGCTGCCACAACGCTCGGCCCAGCTAGGGCTTTGACATGGAATGAACTCTCTATGCCTAAGCCAA
130 TGCTGCCACAACGCTCAGCCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATG-C-AAGCCAA
* *** * * ** *
15728100 CCCACAAAACGGGCGTGTGGGAGCTCAACTGGCCGGAGAGGTAGAATGCACAGGCTGGGGATCGA
193 CCCACAAAACGGACGTACAGGAGCTCAACTGACCGGAGAGGCAGAATGCACAAACCGGGGATCGA
** ** *
15728165 CCCGATCCTTCGGCGTGCTATTGATCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACAG
258 CCCGATCCCCCGGCGTGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTCTGATCTTAGACAG
*
15728230 GGAATGCACTCCGTACG
323 GGAATGAACTCCGTACG
* * *
15728247 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTAGGCACTGAGC
1 CTTAGAC-TGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* * * ***** * *
15728312 CGGTCGAAGAGGCATTATGCGAAAGTTGAGGATCGGTTGGGTCCCCCTCTACGT-GTCGCCGGTC
65 CGGCCGAAGAGGCATAATGCGAAAGTCGAGGATCGGCCCAATCCCCCTCTACGTACT-GCCAGTC
* ** *
15728376 CTGCTGCCACAAAC-CTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG-AAGCCAA
129 CTGCTGCCAC-AACGCTCAGCCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCAAGCCAA
** * * * ** ** *
15728439 CCCATGAAACGGACTTACAGGTGTTCAGTTGATTGGAGAGGCAGAATGCACAAACCGGGGATCGG
193 CCCACAAAACGGACGTACAGGAGCTCAACTGACCGGAGAGGCAGAATGCACAAACCGGGGATCGA
* * *
15728504 CCCGATCCCCCCTGCTTGCTACCGATCCTGCTG-CAGCAACCCTCGATCTGGTCTGATCTTAGAC
258 CCCGAT-CCCCCGGCGTGCTACCGATCCTACTGTC-GCAACCCTCGATCTGGTCTGATCTTAGAC
* * *
15728568 TA-GTAATGAACTTCGTATG
321 -AGGGAATGAACTCCGTACG
*
15728587 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
1 CTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
15728641 GGGCGCTCAG
Statistics
Matches: 323, Mismatches: 64, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
339 61 0.19
340 108 0.33
341 2 0.01
342 148 0.46
343 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (339 bp):
CTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGCC
GGCCGAAGAGGCATAATGCGAAAGTCGAGGATCGGCCCAATCCCCCTCTACGTACTGCCAGTCCT
GCTGCCACAACGCTCAGCCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCAAGCCAACCC
ACAAAACGGACGTACAGGAGCTCAACTGACCGGAGAGGCAGAATGCACAAACCGGGGATCGACCC
GATCCCCCGGCGTGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTCTGATCTTAGACAGGGA
ATGAACTCCGTACG
Found at i:15728909 original size:25 final size:26
Alignment explanation
Indices: 15728861--15728912 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15728851 CCAGTCTGAT
* *
15728861 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15728887 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15728912 C
1 C
15728913 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15728919 original size:299 final size:296
Alignment explanation
Indices: 15728371--15728949 Score: 736
Period size: 299 Copynumber: 1.9 Consensus size: 296
15728361 TACGTGTCGC
*
15728371 CGGTCCTGCTGCCACAAACCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGAAGC
1 CGGTCCTGCTGCCACAAACCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGAAGC
* * * **** *
15728436 CAACCCATGAAACGGACTTACAGGTGTTCAGTTGATTGGAGAGGCAGAATGCACAAACCGGGGAT
66 CAACCCACGAAACGGACGTACAGGCGTTCAGTTGACCAAAGAGGCAGAATGCACAAACCGAGGAT
* * * **
15728501 CGGCCCGATCCCCCCTGCTTGCTACCGATCCTGCTGCAGCAACCCTCGATCTGGTCTGATCTTAG
131 CAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTGCAGCAACCCTCGATCCAGTCTGATCTTAG
* * *
15728566 ACTAGTAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAA
196 ACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACGAA
* *
15728631 ACGAGCGTGCGGGCGCTCAGCCGACTTGCGTGCTGT
261 ACGAGCGTGCAGGCACTCAGCCGACTTGCGTGCTGT
* * * *
15728667 CGGTTCTGCTGCCACAACCCTCATTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCGA
1 CGGTCCTGCTGCCACAAACCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT---GA
* * * * **
15728732 AGCCAACCCACGAAATGGGCGTACGGGCGCTT-AGCTTG-CCAAAGAGGCAGAATGCTCAGGCCG
63 AGCCAACCCACGAAACGGACGTACAGGCG-TTCAG-TTGACCAAAGAGGCAGAATGCACAAACCG
* * *
15728795 AGGATCAGCCCGATCTCCCCTACGTGCTGATCGATCCTGCTGTCA-TAACCCTC-AGTCCAGTCT
126 AGGATCAGCCCGATCCCCCCTACGTGCT-ACCGATCCTGCTG-CAGCAACCCTCGA-TCCAGTCT
* *
15728858 GATCTTAGATTGGGAATGAACTTCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAA
188 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
*
15728922 CACATGAAACGAGCGTGCAGGCACTCAG
253 CACACGAAACGAGCGTGCAGGCACTCAG
15728950 TCGGTCGAAG
Statistics
Matches: 240, Mismatches: 35, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
296 55 0.23
299 119 0.50
300 64 0.27
301 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (296 bp):
CGGTCCTGCTGCCACAAACCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGAAGC
CAACCCACGAAACGGACGTACAGGCGTTCAGTTGACCAAAGAGGCAGAATGCACAAACCGAGGAT
CAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTGCAGCAACCCTCGATCCAGTCTGATCTTAG
ACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACGAA
ACGAGCGTGCAGGCACTCAGCCGACTTGCGTGCTGT
Found at i:15729245 original size:26 final size:26
Alignment explanation
Indices: 15729216--15729268 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729206 CCGATCCAAT
15729216 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15729242 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15729268 C
1 C
15729269 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15729771 original size:26 final size:26
Alignment explanation
Indices: 15729720--15729772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729710 CTAGTCTGAT
*
15729720 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
15729746 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15729772 C
1 C
15729773 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15730922 original size:26 final size:26
Alignment explanation
Indices: 15730886--15730941 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15730876 CTGATTCGAT
*
15730886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
15730912 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
15730938 CTTA
1 CTTA
15730942 GGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:15731303 original size:26 final size:26
Alignment explanation
Indices: 15731265--15731317 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731255 CTGGTCTAAT
15731265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15731291 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15731317 C
1 C
15731318 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15731593 original size:26 final size:26
Alignment explanation
Indices: 15731557--15731609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731547 CCAATCTGAT
15731557 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
15731583 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
15731609 C
1 C
15731610 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:15731950 original size:26 final size:26
Alignment explanation
Indices: 15731899--15731951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731889 CCGGTTTGAT
* *
15731899 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15731925 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15731951 C
1 C
15731952 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15732659 original size:26 final size:26
Alignment explanation
Indices: 15732621--15732671 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15732611 GGCTCAAACT
** *
15732621 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACACGGAATGAACTCCGTATG
15732647 CTTAGACACGGAATGAACTCCGTAT
1 CTTAGACACGGAATGAACTCCGTAT
15732672 TCCTAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:15733186 original size:26 final size:26
Alignment explanation
Indices: 15733135--15733186 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15733125 CCGGTCCGAT
*
15733135 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15733161 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15733187 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15733349 original size:26 final size:26
Alignment explanation
Indices: 15733320--15733370 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15733310 TGATCCGATC
*
15733320 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
15733346 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
15733371 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:15734948 original size:26 final size:26
Alignment explanation
Indices: 15734909--15734960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15734899 TGGCTCAAAA
15734909 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
15734935 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
15734961 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:15735452 original size:26 final size:26
Alignment explanation
Indices: 15735423--15735475 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15735413 CCGATCCGAT
*
15735423 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
15735449 CTTAGACATGGAATAAACTTCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
15735475 C
1 C
15735476 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:15736676 original size:26 final size:26
Alignment explanation
Indices: 15736638--15736690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15736628 GGCTCAAAAT
*
15736638 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGCATG
*
15736664 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACACCGCATG
15736690 C
1 C
15736691 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGCATG
Found at i:15737074 original size:89 final size:90
Alignment explanation
Indices: 15736909--15737084 Score: 196
Period size: 89 Copynumber: 2.0 Consensus size: 90
15736899 CATAACGCGT
* * * *
15736909 AAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCA
1 AAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTCCA
*
15736974 GCTAGGGCTTAGACAT-GGAATGCGC
66 GCTAGAGCTTAGAC-TGGGAATGCGC
* * * * * *
15736999 AAGCCAGGGATCGGCTCGAT-CCCCTCTACGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCCA
1 AAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTCC-
* *
15737063 ATCT-GATCTTAGACTGGGAATG
65 AGCTAGAGCTTAGACTGGGAATG
15737085 AACTCCATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
88 1 0.01
89 50 0.70
90 20 0.28
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.20
Consensus pattern (90 bp):
AAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTCCA
GCTAGAGCTTAGACTGGGAATGCGC
Found at i:15737099 original size:26 final size:26
Alignment explanation
Indices: 15737070--15737122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15737060 CCAATCTGAT
15737070 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15737096 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15737122 C
1 C
15737123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15737855 original size:158 final size:155
Alignment explanation
Indices: 15737466--15737875 Score: 410
Period size: 158 Copynumber: 2.6 Consensus size: 155
15737456 TTCATATGCA
* * * *
15737466 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGGCG
1 TAGACAGGGAATGAACTCCGTATGCCTAA-CTAACCCACGAAACGAACGTG-GGGCATTCAGCCG
* * * * *
15737531 GTCGGAGAGGTAGAATGTGCAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTGC
64 GTCGGAGAGG-AAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCAATCCTGC
*** * *
15737596 TACTGTAACCTTCGGTCCAGTTGGATCT
128 TACCACAACCTTCGGTCCAGCTGGAGCT
* * * * * * * *
15737624 TTGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCATGGGGCACTGAACCG
1 TAGACAGGGAATGAACTCCGTATGCCTAACT-AACCCACGAAACGAA-CGTGGGGCATTCAGCCG
* * * *
15737688 GCCGGAGAGGAATAACGCGCAAGCCGGGGATTAGCCCGATCCCCCTCTACATGCTACCGATCCTG
64 GTCGGAGAGGAA-AATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACATGCTACCAATCCTG
* *
15737753 CTGCCACAACCCTT-GGTCCAGCTGGGGCT
127 CTACCACAA-CCTTCGGTCCAGCTGGAGCT
** *
15737782 TAGACAGGGAATGAACTCCGTCCGCCTAACTAACCCACGAAACGAACGTGAGGGCATTCAGCCGA
1 TAGACAGGGAATGAACTCCGTATGCCTAACTAACCCACGAAACGAACGTG-GGGCATTCAGCCGG
** *
15737847 TCAAAGAGGCAAAATGCGCAAGCTGGGGA
65 TCGGAGAGG-AAAATGCGCAAGCCGGGGA
15737876 CCAGTCTGGT
Statistics
Matches: 200, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 62 0.31
158 131 0.65
159 6 0.03
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (155 bp):
TAGACAGGGAATGAACTCCGTATGCCTAACTAACCCACGAAACGAACGTGGGGCATTCAGCCGGT
CGGAGAGGAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCAATCCTGCTAC
CACAACCTTCGGTCCAGCTGGAGCT
Found at i:15738295 original size:26 final size:26
Alignment explanation
Indices: 15738266--15738344 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
15738256 CCGATCCGAT
15738266 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
15738292 CTTAGACATGGAGTGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
15738318 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
15738344 C
1 C
15738345 CTAAGCCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15738877 original size:26 final size:26
Alignment explanation
Indices: 15738848--15738900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15738838 CTGGTCTGAT
*
15738848 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
15738874 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15738900 C
1 C
15738901 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15739501 original size:26 final size:26
Alignment explanation
Indices: 15739460--15739512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15739450 CCAGTCTGAT
15739460 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
15739486 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15739512 C
1 C
15739513 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15739964 original size:26 final size:26
Alignment explanation
Indices: 15739928--15739980 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15739918 CTGATCTGAT
*
15739928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
15739954 CTTACACTGGGGATTAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15739980 C
1 C
15739981 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15740042 original size:468 final size:467
Alignment explanation
Indices: 15739144--15740051 Score: 1199
Period size: 468 Copynumber: 1.9 Consensus size: 467
15739134 GCTCAAACTG
* *
15739144 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
1 TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACC
* * *
15739209 GACCGAAGATGCAAAATGCGTAACCTGGGGATCGGCCCGATCCCCCTCTGCATGCTATCGGTCCC
66 GACCGAAGAGGCAAAATGCG-AACCTGAGGATCAGCCCGATCCCCCTCTGCATGCTATCGGTCCC
* * *
15739274 ACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
130 ACCGCCACAACCCTCGATCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAC
* *
15739339 CCACGAAACAGACGTGCAGGCGCTTAGCTGGCCGAAGAGGTAGAATGCGCAAGCTGGGGATCAGC
195 CCACGAAACAGACGTGCAGGCGCTTAGCTGGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCAGC
* *
15739404 TCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTG
260 TCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTG
* * *
15739469 GAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCGTGAAACGA
325 GAAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
* * *
15739534 GCGTACGGGCGCTCAGCCCATCAGAAAGGCTGGTCGGAGAGGCAGAATGCGTAAATCAGAGATCG
390 GCGTACGAGCGCTCAGCCCACCAGAAAGGCTGGCCGGAGAGGCAGAATGCGTAAATCAGAGATCG
15739599 GCCCGATCCGATC
455 GCCCGATCCGATC
** * *
15739612 TTAGAATGGGAATGAACTCCGTATGCCTAATTCAACCCATAAAACGAGCGTTCGGGCACT-AAGC
1 TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA-C
* * * * * *
15739676 CGACTGGAGAGGTATAACATGC-AAGCC-GAGGATCAGCCCGGTCCCCCTCTGCGTGCT-GCTGG
65 CGACCGAAGAGGCA-AA-ATGCGAA-CCTGAGGATCAGCCCGATCCCCCTCTGCATGCTATC-GG
* *
15739738 TCCCACCGTCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGC
126 TCCCACCGCCACAACCCTCGATCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGC
* *
15739803 CAACCCACGAAACAGGCGTGC-GAGCGCTCT-G-TCGGCCGGAGAGGCAGAATGCGCAA-CTCAG
191 CAACCCACGAAACAGACGTGCAG-GCGCT-TAGCT-GGCCGAAGAGGCAGAATGCGCAAGCT-AG
* * * * ** * *
15739864 GGATCGGTTTGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCATCCCTC-AGT-CTGATCTGA
252 GGATCAGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGA-TCCAG-TCTGA
* *
15739927 TCTTAGACTGGGAATGAACTCCGTATGCTTACACTGGGGATTAACTCTGTATGCCTAAGTCAACC
315 TCTTAGACTGGAAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATGCCTAAGTCAACC
* * * * *
15739992 CATGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGG-TCGGCCGGAGAGGCATAATGC
380 CATGAAACGAGCGTACGAGCGCTCAGCCCACCAGAAAGGCT-GGCCGGAGAGGCAGAATGC
15740052 ACGAGCCAGG
Statistics
Matches: 381, Mismatches: 47, Indels: 24
0.84 0.10 0.05
Matches are distributed among these distances:
467 11 0.03
468 361 0.95
469 5 0.01
470 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (467 bp):
TTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACC
GACCGAAGAGGCAAAATGCGAACCTGAGGATCAGCCCGATCCCCCTCTGCATGCTATCGGTCCCA
CCGCCACAACCCTCGATCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACC
CACGAAACAGACGTGCAGGCGCTTAGCTGGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCAGCT
CGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGG
AAATGAACTCCGTATGCTTACACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG
CGTACGAGCGCTCAGCCCACCAGAAAGGCTGGCCGGAGAGGCAGAATGCGTAAATCAGAGATCGG
CCCGATCCGATC
Found at i:15740347 original size:26 final size:26
Alignment explanation
Indices: 15740309--15740361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15740299 TCGATCTGAT
15740309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15740335 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15740361 C
1 C
15740362 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15740858 original size:26 final size:26
Alignment explanation
Indices: 15740807--15740859 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15740797 CCGGTCTGAT
**
15740807 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
15740833 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15740859 C
1 C
15740860 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15741571 original size:26 final size:26
Alignment explanation
Indices: 15741530--15741582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15741520 GGCTCAAAAT
15741530 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15741556 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15741582 C
1 C
15741583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15743038 original size:710 final size:708
Alignment explanation
Indices: 15741528--15743039 Score: 1736
Period size: 710 Copynumber: 2.1 Consensus size: 708
15741518 GTGGCTCAAA
* *
15741528 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
* * * ** * * *
15741593 TCACGAAACAAGCATACGGGCGCTCAGCAAATTGAAAAGGTCGAATGAAGAGGCAGAACGCGAAG
66 CCACGAAACAAGCGTGC-GGCGCTCAGCAAACCGAAAAGGCCGAACGAAGAGGCAGAACGCCAAG
* * * * * *
15741658 CCGAGGATCAGCTCGATCCCCCCTTACGTGCTACCATCCTACTGTTGGTCCTGCTGCTGCAACCA
130 CAGAGGATCAGCCCGATCCCCCCTTACGTGCTACCATCCTACTGCTGGTCCTACTACCGCAACCA
** * *
15741723 TTGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCGTA
195 TCAGTCCGGTTCGATCTTAGACTGAGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCGTA
* ** * * * *
15741788 TGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCAATCGGCAGGAGAGGTAGAATGCGCAA
260 TACCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGGCAGGACAGGTAGAATACGAAA
** * * * *
15741853 GTCAGGGACCGACCCAGTCCCCCCTGTGTACTGTCAATCCTACCATCGCAACCCTCGATCTGGTT
325 GTCAGGGACCGACCCAGTCCCCCCTGCATACTATCAATCCGACCACCGCAACCCTCGATCCGGTT
* * * * *
15741918 CGATCTTATACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAATGAGTGTTCGGGCGCC
390 CGAGCTTAGACTAGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCC
* * *
15741983 GAGCCGACCGGAGAGGCATAATGCACAAGCTGGGGATTGGCCTGGTCCCCCTCAACATGCTACCG
455 GAGCCGACCGGAAAGGCATAATGCACAAGCTGGGGATCGACCTGGTCCCCCTCAACATGCTACCG
* * * * *
15742048 GTCTCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAG
520 ATCCCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAC
* * * * * *
15742113 CCAACCCATGAAATGGGCGTACGGGCACTCAGCCGACCGAAGAGGCAGAATCCGCAAGCCGGGGA
585 CCAACCCACGAAACGGACGTACGGGCACTCAACCAACCGAAGAGGCAGAATCCGCAAGCCAGGGA
* * ** *
15742178 TCGGCTCGGTCCCCCCGACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTTAGTCTG
650 TCGGCCCGGTCCACCCGACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAGTCCG
* *
15742237 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * ** * *
15742302 CCACGAAACAAGGGTGATGGCGCTCAGTC-GACCGGAGAGGCCGGCCGAAGAGGCATAATGCACA
66 CCACGAAACAAGCGTG-CGGCGCTCAG-CAAACCGAAAAGGCCGAACGAAGAGGCAGAACGC-CA
* * *
15742366 AGTCAG-GGATC-GACCC-AGTCCCCCCTTGCGTGCTACCAATCTTACTGCTGGTTCTACTACCG
128 AG-CAGAGGATCAG-CCCGA-TCCCCCCTTACGTGCTACC-ATCCTACTGCTGGTCCTACTACCG
* * *
15742428 CAACCCTCAGTCCGG-TCTGATCTTAGACT-AGAATGAACTTCGTATGCTTAGACATGGAATGAA
189 CAACCATCAGTCCGGTTC-GATCTTAGACTGAGAATGAACTCCGTATGCCTAGACATGGAATGAA
* * * * *
15742491 CTCTGTATACCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGCCGGTC-GGACAGGTAGA
253 CTCCGTATACCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGG-CAGGACAGGTAGA
* * * * **
15742555 ATACGAAAG-CTGGGGACCGATCC-GATCCCCCCTGCATGCTATCGATCCGACTGCCGCAACCCT
317 ATACGAAAGTC-AGGGACCGACCCAG-TCCCCCCTGCATACTATCAATCCGACCACCGCAACCCT
* * *
15742618 CGGTCCGG-TCTGAGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAAGCCATGAAACGAGT
380 CGATCCGGTTC-GAGCTTAGACTAGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGT
** * * *
15742682 GTACGGGCGTTGAGTCGACCTGAAAGGCATAATGCGCAAGCTGGGGATCGA-CTCGGTCCCCCTC
444 GTACGGGCGCCGAGCCGACCGGAAAGGCATAATGCACAAGCTGGGGATCGACCT-GGTCCCCCTC
** * ** * * *
15742746 TGCGTGCTGTCGATCCCACTGCCACAACCCTCGAT-TGAGGTGGGGCTTAGACATGGAATGAACT
508 AACATGCTACCGATCCCACTACCACAACCCTCGATCCGA-CTGGGGCTTAGACATGGAATGAACT
* * * * *
15742810 CCCTATGCCTAACCCATCCCACGAAACGGACGTGCGGGCGCTCAACCAACC-AGAGAGGTAGAAT
572 CCCTATACCTAACCCAACCCACGAAACGGACGTACGGGCACTCAACCAACCGA-AGAGGCAGAAT
* * ** *
15742874 GCGCAAGTCAGGGATCGGCCCGGTCCACCCTTCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGT
636 CCGCAAGCCAGGGATCGGCCCGGTCCACCCGACGTGCTGTCGATCCTACTGTCGCAACCCTCGGT
*
15742939 CCGGTCCG
701 CCAGTCCG
* *
15742947 ATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
**
15743012 CCACGAAATGAGCGTGCGGACGCTCAGC
66 CCACGAAACAAGCGTGCGG-CGCTCAGC
15743040 CAACTAGAGA
Statistics
Matches: 667, Mismatches: 120, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
709 117 0.18
710 507 0.76
711 43 0.06
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (708 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACAAGCGTGCGGCGCTCAGCAAACCGAAAAGGCCGAACGAAGAGGCAGAACGCCAAGC
AGAGGATCAGCCCGATCCCCCCTTACGTGCTACCATCCTACTGCTGGTCCTACTACCGCAACCAT
CAGTCCGGTTCGATCTTAGACTGAGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCGTAT
ACCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAACCGGCAGGACAGGTAGAATACGAAAG
TCAGGGACCGACCCAGTCCCCCCTGCATACTATCAATCCGACCACCGCAACCCTCGATCCGGTTC
GAGCTTAGACTAGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCCG
AGCCGACCGGAAAGGCATAATGCACAAGCTGGGGATCGACCTGGTCCCCCTCAACATGCTACCGA
TCCCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAACC
CAACCCACGAAACGGACGTACGGGCACTCAACCAACCGAAGAGGCAGAATCCGCAAGCCAGGGAT
CGGCCCGGTCCACCCGACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAGTCCG
Found at i:15744013 original size:158 final size:156
Alignment explanation
Indices: 15743670--15744013 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 156
15743660 TGGCTCAAAC
* *
15743670 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGTGCTCAGT
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGT
* * * * ** * * *
15743735 CGACTGAAGAGGTAGAATGCATAAGTCGAGGATTAGCCCCGTCACCCTTTGCGTGCTGCTGATGC
66 CGACTGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCCGTCACCCCCTGCATGCTGCCGATAC
* * *
15743800 CGTTGCCACAACCCTTGGTCCGATCG
131 CATTGCAACAACCCTCGGTCCGATCG
* *
15743826 TGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGG-GCAC
1 T--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTG--C
*
15743889 TCAGTCGACT-AGAGAGGCAGAATGCACAAGCC-AGGGATCAGCCCGGTC-CCCCCTGCATGCTG
61 TCAGTCGACTGA-AGAGGCAGAATGCACAAGCCGA-GGATCAGCCCCGTCACCCCCTGCATGCTG
* *
15743951 CCGA-ACCTATTGTAACAACCCTCGGTCCGGTCCG
124 CCGATACC-ATTGCAACAACCCTCGGTCCGAT-CG
* *
15743985 ATCTTAGACTGGGAGTGAACTTCGTATGC
1 -TCTTAGACTGGGAATGAACTCCGTATGC
15744014 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
156 1 0.01
157 4 0.03
158 106 0.68
159 43 0.28
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCTCAGT
CGACTGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCCGTCACCCCCTGCATGCTGCCGATAC
CATTGCAACAACCCTCGGTCCGATCG
Found at i:15744023 original size:26 final size:27
Alignment explanation
Indices: 15743987--15744040 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
15743977 CCGGTCCGAT
*
15743987 CTTAGACTGGGAG-TGAACTTCGTATG
1 CTTAGACTGGGAGATGAACTCCGTATG
*
15744013 CTTAGACTGGGGGATGAACTCCGTATG
1 CTTAGACTGGGAGATGAACTCCGTATG
15744040 C
1 C
15744041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAGATGAACTCCGTATG
Found at i:15744981 original size:159 final size:159
Alignment explanation
Indices: 15744713--15745119 Score: 425
Period size: 159 Copynumber: 2.6 Consensus size: 159
15744703 AACTCCATAT
* * * * *
15744713 GCTTAGACATGGAATGAACTCTGTCTGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGAGATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAG
* * * * * **
15744778 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGACCGACTCGATCCCTCC-GTGCGTGCTGTCGAT
66 CCGATCAGAGAGGCAGAATGCGTAAGCCAGGGACCGACTCGATCCC-CCTCTGCGTGCTACCGAT
* ** *
15744842 CCTGCTGTCGTAACCCTCGGTCCGGTCT-GA
130 CCTGCTGCCACAACCCTCGGTCC-GACTGGA
* * * * *
15744872 TCTTAG-GCTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCACTGA
1 GCTTAGAGAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCA
* * * * *
15744936 GCCGATCAGAGAGGCATAATGTGCT-AGCCAGGGATCGGC-CTGATCCCCCTCTGTGTGCTACCG
65 GCCGATCAGAGAGGCAGAATGCG-TAAGCCAGGGACCGACTC-GATCCCCCTCTGCGTGCTACCG
*
15744999 ATCCTGCTGCCACAACCCTCGGTCCGACTGGG
128 ATCCTGCTGCCACAACCCTCGGTCCGACTGGA
** * *
15745031 GCTTAGAGATGG-A--AACTCCCTATGCCTAAGCCAACCCATTAAATGGGCATGCGGGCACTCAG
1 GCTTAGAGATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAG
*
15745093 CCGGTCAGAGAGGCAGAATGCGTAAGC
66 CCGATCAGAGAGGCAGAATGCGTAAGC
15745120 TAAGCATCAA
Statistics
Matches: 203, Mismatches: 38, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 64 0.32
158 8 0.04
159 127 0.63
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGAGATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAG
CCGATCAGAGAGGCAGAATGCGTAAGCCAGGGACCGACTCGATCCCCCTCTGCGTGCTACCGATC
CTGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:15745139 original size:156 final size:154
Alignment explanation
Indices: 15744895--15745179 Score: 333
Period size: 156 Copynumber: 1.8 Consensus size: 154
15744885 ATGAACTCTG
* * * *
15744895 TATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCACTGAGCCGATCAGAGAGGCATAATGTGC
1 TATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCGATCAGAGAGGCAGAATGCGC
* * ** * * *
15744960 TAGCCAGGGATCGGCCTGATCCCCCT-CTGTGTGCTACCGATCCTGCTGCCACAACCCTCGGTCC
66 TAGCCAAGCATCACCCAGATCCCCCTGC-GTGT--TACCGATCCTCCTACCACAACCCTCGGTCC
15745024 GACTGGGGCTTAGAGATGGAAACTCCC
128 GACTGGGGCTTAGAGATGGAAACTCCC
* * * *
15745051 TATGCCTAAGCCAACCCATTAAATGGGCATGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCG-
1 TATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCGATCAGAGAGGCAGAATGCGC
* * * *
15745115 TAAGCTAAGCATCAACCCAG-TCCCCCTGCGTGTTATCGATCCTCCTATCGCAACCCTCGGTCCG
66 T-AGCCAAGCATC-ACCCAGATCCCCCTGCGTGTTACCGATCCTCCTACCACAACCCTCGGTCCG
15745179 A
129 A
15745180 TCCGATCTTA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
154 27 0.25
155 1 0.01
156 75 0.70
157 4 0.04
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (154 bp):
TATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCCGATCAGAGAGGCAGAATGCGC
TAGCCAAGCATCACCCAGATCCCCCTGCGTGTTACCGATCCTCCTACCACAACCCTCGGTCCGAC
TGGGGCTTAGAGATGGAAACTCCC
Found at i:15745886 original size:26 final size:26
Alignment explanation
Indices: 15745848--15745900 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15745838 GGTTCAAAAT
15745848 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15745874 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15745900 C
1 C
15745901 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15746373 original size:157 final size:153
Alignment explanation
Indices: 15745874--15746410 Score: 420
Period size: 158 Copynumber: 3.4 Consensus size: 153
15745864 ACTCCGTATG
* * * *
15745874 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGC-GGCGCTCAGC
* * * ** * * *
15745939 CGGTCGAAGAGGAAGAATGTGCAAGCTGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCT
65 CGATTGAAGAGGCAGAATGCACAAGC-CGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* *
15746004 ACTGTCGCAACCCTCGGTCTGGTCCGAT
129 -C-ATCGCAACCCTCGGT-TTGTCCGAT
* * * * * *
15746032 CTTAGAC-TGCGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGAGCACTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCG-GCGCTCAG
* * * * ** ** * *
15746096 TCGATTGAAGAGGCATAATGCGA-AAGTCGAGGATCAGCTTGGCCCCCCTCTGTGTGCTG-CGGT
64 CCGATTGAAGAGGCAGAATGC-ACAAGCCG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
* * * **
15746159 CC-CACTGCCACAACCCTCGGTTTGGCTGGGG
126 CCTCA-T--CGCAACCCTCGGTTTGTC-CGAT
* * * *
15746190 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAATCCACGAAATGGGTGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGC-GGCGCTCAGC
* *
15746255 CGATTG-GGAAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
65 CGATTGAAG-AGGCAGAATGCACAAGCC-GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
15746319 TGCATCGCAACCCTCGGTTTGATCCGAT
128 T-CATCGCAACCCTCGGTTTG-TCCGAT
* * * * * *
15746347 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACGCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGC-GGCGCTCAG
15746411 TCAACCAGAG
Statistics
Matches: 288, Mismatches: 72, Indels: 39
0.72 0.18 0.10
Matches are distributed among these distances:
156 3 0.01
157 85 0.30
158 184 0.64
159 14 0.05
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (153 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGCGCTCAGCC
GATTGAAGAGGCAGAATGCACAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTCA
TCGCAACCCTCGGTTTGTCCGAT
Found at i:15746693 original size:28 final size:28
Alignment explanation
Indices: 15746653--15746709 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
15746643 TATCCCCAAA
15746653 TTTGTAGAGGTGATCCTTGTATTTTTGT
1 TTTGTAGAGGTGATCCTTGTATTTTTGT
15746681 TTTGTAGAGGTGATCCTTGTATTTTTGT
1 TTTGTAGAGGTGATCCTTGTATTTTTGT
15746709 T
1 T
15746710 GGCATGCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.07, G:0.25, T:0.54
Consensus pattern (28 bp):
TTTGTAGAGGTGATCCTTGTATTTTTGT
Found at i:15749157 original size:158 final size:158
Alignment explanation
Indices: 15748869--15749158 Score: 424
Period size: 158 Copynumber: 1.8 Consensus size: 158
15748859 GACCAACAGC
* * * *
15748869 AGGATCGGCAGCATGCAGGGGGGACTAGGCGGATCCCCAGCTTGCGCATTCTACCTCTCTGATCG
1 AGGATCGACAGCAAGCAGGGGGGACCAGGCGGATCCCCAGCTTGCGCATTCTACCTCTCCGATCG
*
15748934 GTTGAGCACCCGCATGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GTTGAGCACCCGCATGCTAGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAG
15748999 CACCAGCCGGACCAAGGGTTACAGTAGT
131 CACCAGCCGGACCAAGGGTTACAGTAGT
* * * *
15749027 AGGATCGATAGCAAGCAGGGGGGACCAGGTC-GATCCCCGGCTTGCGCATTCTATCTCTCCGGTC
1 AGGATCGACAGCAAGCAGGGGGGACCAGG-CGGATCCCCAGCTTGCGCATTCTACCTCTCCGATC
* * *
15749091 GGTTGAGCGCCCGCA-CCTTCA-TTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCT
65 GGTTGAGCACCCGCATGC-T-AGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCT
15749154 AAGCA
128 AAGCA
15749159 TACGGAGTTC
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
157 1 0.01
158 114 0.97
159 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGATCGACAGCAAGCAGGGGGGACCAGGCGGATCCCCAGCTTGCGCATTCTACCTCTCCGATCG
GTTGAGCACCCGCATGCTAGTTTCATGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGCCGGACCAAGGGTTACAGTAGT
Found at i:15749166 original size:26 final size:26
Alignment explanation
Indices: 15749130--15749182 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15749120 GTTGGCTGAG
15749130 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15749156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15749182 G
1 G
15749183 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15749363 original size:26 final size:26
Alignment explanation
Indices: 15749327--15749379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15749317 GTTGACTTAG
15749327 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15749353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15749379 G
1 G
15749380 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15749460 original size:197 final size:197
Alignment explanation
Indices: 15749094--15749463 Score: 489
Period size: 197 Copynumber: 1.9 Consensus size: 197
15749084 TCCGGTCGGT
* *
15749094 TGAGCGCCCGCACCTTCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACCTTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATCCCATGTCTAAGCA
* * *
15749159 TACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGTAGGATCGACAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAGCA
** * **
15749224 CGTAGGGGGGACCGGGCTGATCCTCGACTTATGCATTCTGCCTCTCCAGCCGACCTCTCCAATCG
131 CACAGGGGGGACCGGGCTGATCCCCGACTTACACATTCTGCCTCTCCAGCCGACCTCTCCAATCG
15749289 AC
196 AC
* * * *
15749291 TGAGCGCCCGCGCGC-TCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
1 TGAGCGCCCGCAC-CTTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCAT-CCCATGTCTAAG
* **
15749354 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGTGTTATGGCAGCAGGATCGACA
64 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTACAGCAGCAGGATCGACA
* *
15749418 GCACACAGGGGGGACCAGG-TCGATCCCC-AGCTTGCACATTCTGCCT
128 GCACACAGGGGGGACCGGGCT-GATCCCCGA-CTTACACATTCTGCCT
15749464 ATTCGATCGG
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
196 3 0.02
197 142 0.95
198 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (197 bp):
TGAGCGCCCGCACCTTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATCCCATGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAGGATCGACAGCA
CACAGGGGGGACCGGGCTGATCCCCGACTTACACATTCTGCCTCTCCAGCCGACCTCTCCAATCG
AC
Found at i:15749641 original size:159 final size:158
Alignment explanation
Indices: 15749401--15749697 Score: 443
Period size: 159 Copynumber: 1.9 Consensus size: 158
15749391 CTGAGTGTTA
*
15749401 TGGCAGCAGGATCGACAGCACACAGGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTAT
1 TGGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTAT
* * * *
15749466 TCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGGTTAGGCATAGGGAGTTCATTCCCT
66 CCGATCGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
*
15749531 GTCTAAGCCCCAGCCGAACCAAGGGTTG
131 ATCTAAGCCCCAGCCGAACCAAGGGTTG
* * * * * *
15749559 TGGCAGCGGGAT-GACTAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT
1 TGGCAGCAGGATCGAC-AGCACACAG-GGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCT
* *
15749623 CTCCGATCGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATATGGAGTTCATTCC
64 ATCCGATCGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
15749688 ATATCTAAGC
129 ATATCTAAGC
15749698 ATACGGAGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
157 3 0.02
158 19 0.15
159 101 0.82
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
TGGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTAT
CCGATCGGCTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
ATCTAAGCCCCAGCCGAACCAAGGGTTG
Found at i:15749699 original size:26 final size:26
Alignment explanation
Indices: 15749670--15749722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15749660 GTTGGCTTAG
*
15749670 GCATATGGAGTTCATTCCATA-TCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
15749696 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15749722 G
1 G
15749723 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15751610 original size:159 final size:154
Alignment explanation
Indices: 15751247--15751676 Score: 359
Period size: 159 Copynumber: 2.7 Consensus size: 154
15751237 TAAGCATACA
* * * * * *
15751247 GAGTTCATTCCCAGTTTAAAATCAGATCAAATCAAGGGTTGCGACAGCATGATTGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAATC-AGGGTTGTGGCAGCAGGACTGACAGCACGCA
* * * * * **
15751312 GGGGGGATTAGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGTACCC
65 GAGGGGATTAGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCCCACCC
*
15751377 ATTTGTGGGTTGGCTTAGGCATAGG
130 ATTTGTGGGTTGACTTAGGCATAGG
** * *
15751402 GAGTTCATT-CCATGTCTAAGCCCTA-ATCAGATCATGGGTTGTGGCAGCAGGACTGGCAGCACG
1 GAGTTCATTCCCA-GTCTAAGATC-AGATCAAATCA-GGGTTGTGGCAGCAGGACTGACAGCACG
* * *
15751465 CAGAAGGGGA-TCGACCCGATCCCCGGCTTGCGCATTATGCCTTTTCGA-CTGGCTCAGCACCCC
63 CAG-AGGGGATTAGA-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGATC-GGCTCAGCACCCC
** * * *
15751528 CACGCTGGTTTCGTGTGTTGACTTAGGTATATG
125 CAC-C-CATTT-GTGGGTTGACTTAGGCATAGG
* * * *
15751561 GAGTTCATTCCCAATCTAAGATCAGATCAAATCGAGGGTTGTGGTAGCAGGA-TCAACAGCACAC
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAATC-AGGGTTGTGGCAGCAGGACT-GACAGCACGC
* * * ** * * *
15751625 AGAGGGGACTA-AGCTGATTCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGCT
64 AGAGGGGATTAGA-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCT
15751677 GAGCGCCTGT
Statistics
Matches: 217, Mismatches: 43, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
154 4 0.02
155 52 0.24
156 47 0.22
157 1 0.00
158 42 0.19
159 67 0.31
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (154 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAAATCAGGGTTGTGGCAGCAGGACTGACAGCACGCAG
AGGGGATTAGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCCCACCCA
TTTGTGGGTTGACTTAGGCATAGG
Found at i:15751737 original size:158 final size:156
Alignment explanation
Indices: 15751247--15751737 Score: 433
Period size: 158 Copynumber: 3.1 Consensus size: 156
15751237 TAAGCATACA
* * * * * *
15751247 GAGTTCATTCCCAGTTTAAAATCAGATCAAATCAAGGGTTGCGACAGCATGATTGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAATC-AGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * *
15751312 GGGGGGATTAGACCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGTAC-
65 GAGGGGATAAG-CCGATTCCT-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGTACG
* *
15751375 CCA--TTTGTGGGTTGGCTTAGGCATAGG
128 CTAGTTTTGTGGGTTGGCTTAGGCATATG
** * *
15751402 GAGTTCATT-CCATGTCTAAGCCCTA-ATCAGATCATGGGTTGTGGCAGCAGGA-CTGGCAGCAC
1 GAGTTCATTCCCA-GTCTAAGATC-AGATCAAATCA-GGGTTGTGGCAGCAGGATC-GACAGCAC
* * * * * * * * *
15751464 GCAGAAGGGGATCGACCCGATCCCCGGCTTGCGCATTATGCCTTTTC-GACTGGCTCAGCACCCC
62 GCAG-AGGGGAT-AAGCCGATTCCTGGCTTGCGCATTCTGCCTCTTCGGTC-GGCTGAGCACCCG
* * * * * *
15751528 CACGCTGGTTTCGTGTGTTGACTTAGGTATATG
124 TACGCTAGTTTTGTGGGTTGGCTTAGGCATATG
* * * *
15751561 GAGTTCATTCCCAATCTAAGATCAGATCAAATCGAGGGTTGTGGTAGCAGGATCAACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAATC-AGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * *
15751626 GAGGGGACTAAGCTGATTCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCTGTACGC
65 GAGGGGA-TAAGCCGATTCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGTACGC
*
15751691 TAGTTTTATGGGTTGGCTTAGGCATATG
129 TAGTTTTGTGGGTTGGCTTAGGCATATG
15751719 GAGTTCATT-CCATGTCTAA
1 GAGTTCATTCCCA-GTCTAA
15751738 TCATATGGAG
Statistics
Matches: 258, Mismatches: 60, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
154 4 0.02
155 48 0.19
156 42 0.16
157 7 0.03
158 82 0.32
159 70 0.27
160 5 0.02
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAAATCAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
AGGGGATAAGCCGATTCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGTACGCTA
GTTTTGTGGGTTGGCTTAGGCATATG
Found at i:15751742 original size:26 final size:26
Alignment explanation
Indices: 15751713--15751763 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15751703 TTGGCTTAGG
15751713 CATATGGAGTTCATT-CCATGTCTAAT
1 CATATGGAGTTCATTCCCA-GTCTAAT
15751739 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATTCCCAGTCTAA
15751764 GATCAGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAT
Found at i:15752190 original size:26 final size:26
Alignment explanation
Indices: 15752154--15752206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15752144 GTTGACTTAG
15752154 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* * *
15752180 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
15752206 G
1 G
15752207 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:15752482 original size:158 final size:158
Alignment explanation
Indices: 15752288--15752681 Score: 409
Period size: 158 Copynumber: 2.5 Consensus size: 158
15752278 GCGTATTCTA
* *
15752288 CCTCTCCGACCGACTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATA-GGAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
15752352 TCCATGTCTAAGCCCTAACCGGACCGAGGGTTG-TGGTAGCGGGACC-AGCAGCACGAAGAGGGA
66 TCCATGTCTAAGCCCGAACCAGACCGAGGGTTGCT-GTAGCAGGACCGA-CAGCACGAAG-GGGA
*
15752415 GACCAAGTCGATCACTGGCTTGAGCATTATG
128 GACCAAGCCGATCACTGGCTTGAGCATTATG
* * * * * ** *
15752446 CCTCTCCGACCGGCTCAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGGGTTACGAAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
** * * * * * * *
15752511 TCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCTGTAGCAGGATCGATAGCATGCAGGGGGGA
66 T-CCATGTCTAAGCCCGAACCAGACCGAGGGTTGCTGTAGCAGGACCGACAGCACGAAGGGGAGA
* ** * * *
15752575 TCGGGCCGATCCCTGGCTTGCGCATTTTG
130 CCAAGCCGATCACTGGCTTGAGCATTATG
** * * **
15752604 CCTCTCCGACCGACTGAGCACCAACACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
15752669 TCCATGTCTAAGC
66 TCCATGTCTAAGC
15752682 ATACGGAGTT
Statistics
Matches: 187, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 132 0.71
159 47 0.25
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCGAACCAGACCGAGGGTTGCTGTAGCAGGACCGACAGCACGAAGGGGAGAC
CAAGCCGATCACTGGCTTGAGCATTATG
Found at i:15753067 original size:26 final size:26
Alignment explanation
Indices: 15753022--15753072 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753012 TTGACATAGG
*
15753022 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGACTAAT
**
15753048 CATACGGAGTTCATTGCCAGACTAA
1 CATACGGAGTTCATCCCCAGACTAA
15753073 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGACTAAT
Found at i:15753558 original size:26 final size:26
Alignment explanation
Indices: 15753522--15753574 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753512 GTTGGCTTAG
15753522 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15753548 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15753574 G
1 G
15753575 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15754104 original size:26 final size:26
Alignment explanation
Indices: 15754074--15754126 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754064 GTTGACTTAG
15754074 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
**
15754100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15754126 G
1 G
15754127 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15754332 original size:16 final size:15
Alignment explanation
Indices: 15754306--15754335 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
15754296 CCGAGGGTTA
15754306 CAGCAGCAGGATAGG
1 CAGCAGCAGGATAGG
15754321 CAGCATGCAGGATAG
1 CAGCA-GCAGGATAG
15754336 ATCGGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.20, G:0.37, T:0.10
Consensus pattern (15 bp):
CAGCAGCAGGATAGG
Found at i:15754452 original size:26 final size:26
Alignment explanation
Indices: 15754416--15754468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754406 GTTGACTTAG
15754416 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15754442 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15754468 G
1 G
15754469 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15754639 original size:26 final size:26
Alignment explanation
Indices: 15754600--15754652 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754590 GTTGCCTTAG
15754600 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
**
15754626 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
15754652 G
1 G
15754653 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:15754672 original size:184 final size:191
Alignment explanation
Indices: 15754398--15754824 Score: 476
Period size: 197 Copynumber: 2.2 Consensus size: 191
15754388 TACATGTTAA
* * *
15754398 TTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * *
15754462 GTCTAAGATCGAACCGGACTGAGGG-T-TA-CGGTA-G-C-AGGATCGACAGCATGCA-GAGGGA
65 GTCTAAGATCGAACCAGACCGAGGGTTATAGCAGTAGGACAAGGATCGACAGCACGCAGGAGGGA
* * * *
15754520 ATCAGATCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCG
130 ATCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAACACCCACACGCTCG
* * *
15754582 TTTCGTGGGTTGCCTTAGGCATACGGACTTCATTCCATGTCTAAGCATACGGGGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* **
15754647 TCTAAGATC-AGATCAGACCGAGGGTTATAGCAGTAGGACCAACAGTAGGATCGGTAGCACGCAG
66 TCTAAGATCGA-ACCAGACCGAGGGTTATAGCAGTAGG----ACA--AGGATCGACAGCACGCAG
* * ** * * * * *
15754711 GGGGGGATTGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCATACGC
124 GAGGGAATCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAACACCCACACGC
15754776 TCG
189 TCG
*
15754779 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15754825 CCCCAGCCAG
Statistics
Matches: 200, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
183 4 0.02
184 74 0.37
185 1 0.00
186 2 0.01
187 4 0.02
188 1 0.00
193 1 0.00
196 14 0.07
197 99 0.50
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (191 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGAACCAGACCGAGGGTTATAGCAGTAGGACAAGGATCGACAGCACGCAGGAGGGAA
TCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAACACCCACACGCTCG
Found at i:15755007 original size:553 final size:526
Alignment explanation
Indices: 15753868--15755184 Score: 1482
Period size: 553 Copynumber: 2.5 Consensus size: 526
15753858 ATGGGTACGC
*
15753868 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
15753933 CAGTCTAAGATC-AGACCGGACCGAGGGTTACGGTAGCAGGATCGACAAC-TCGCAGGGGGGAA-
66 CAGTCTAAGATCGA-ACCGGACCGAGGGTTACGGTAGCAGGATCGACAACAT-GCA-GGGGGAAT
** ** * *
15753995 CTAGGCCGATCCTCGGTTTACGCATTCTGCCTCTCCGACCGACTGAGCGCACGCACGCTCATTTC
128 C-AGATCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTC
* ** *
15754060 ATGGGTTGACTTAGGCATACAAAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
192 GTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
15754124 AAGATTGAACCAGACCGAGGGTTCCGGTAGCAGGATCGATAGCACGCAGGGGGAATCGGGTCGAT
256 AAGATAGAACCAGACCGAGGGTTCCAGTAGCAGGATCGATAGCACGCAGGGGGAATCGGGCCGAT
* * * *
15754189 CACCGACTTGCGTATTTTGCCTCTCCGATCGGCTGAGAGCCCGCATGCCCATTTCGTGGGTTGGC
321 CACCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGAGCCCACACGCCCATTTCGTGGGTTGGC
* * * *
15754254 TTAGGGATAGGGAGTTCATTGCTTATCTAAGCCCCAGCCAGACCGAGGGTTACAGCAGCAGGATA
386 TTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGGGTTACAGCAGCAGGATA
** * * * ** * *
15754319 GGCAGCATGCAGGATAGATCGGGCCAATCCTCGACTTGTTCATTCTGCTTCTTCGATCGGTTGAG
451 AACAGCATGCAGCACAGAGCGGGCCAATCCTCGACTTGCGCATTATGCCTCTTCGATCGGTTGAG
* * *
15754384 CGCCTACATGT
516 CACCCACACGT
* * *
15754395 TAATTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
* * *
15754460 CAGTCTAAGATCGAACCGGACTGAGGGTTACGGTAGCAGGATCGACAGCATGCAGAGGGAATCAG
66 CAGTCTAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAACATGCAGGGGGAATCAG
* * * * *
15754525 ATCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGG
131 ATCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
15754590 GTTGCCTTAGGCATACGGACTTCATTCCATGTCTAAGCATACGGGGTTCATTCCCAGTCTAAGAT
196 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
15754655 CAG-ATCAGACCGAGGGTTATAGCAGTAGGACCAACAGTAGGATCGGTAGCACGCAGGGGGGGAT
261 -AGAACCAGACCGAGGG-T-T-CCAGTA-G-----C---AGGATCGATAGCACGCA-GGGGGAAT
* * * *
15754719 TGGGCCGATC-CCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA-CCCATACGCTCGTTT
312 CGGGCCGATCACC-GACTTGCGCATTCTGCCTCTCCGATCGGCTGAG-AGCCCACACGCCCATTT
* * **
15754782 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCCAGCCAGACCGGGGGTTGT
375 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG-CCCCAGCCAGACCGAGGGTTAC
* * * * *
15754847 GGTAGCAGGATCGATAACGAGAACGGTAGCA-CACAGAGGGGGACCAGGCTGATCCTCGGCTTGC
439 AGCAGCAGGAT--A-AAC-AG--C-AT-GCAGCACAGAGCGGG-CCA-----ATCCTCGACTTGC
*
15754911 GCATTATGCCTCTTCGA-CTGGTTGAGCACCCGCACGT
490 GCATTATGCCTCTTCGATC-GGTTGAGCACCCACACGT
* ** * *
15754948 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATCCCTGGTCTAAGTATACGGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
* * * * * * * * *
15755013 TAGTCTAAGATCGGACCGGACCGAGGGTTGCCGCAGCAGGATTGACAACACGCAGGGGGGATCGG
66 CAGTCTAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAACATGCAGGGGGAATCAG
* * *
15755078 ATCGATCCTCGTCTTACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGG
131 ATCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGG
*
15755143 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
196 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
15755185 AGTTGGCTTA
Statistics
Matches: 658, Mismatches: 96, Indels: 46
0.82 0.12 0.06
Matches are distributed among these distances:
526 127 0.19
527 116 0.18
528 3 0.00
529 4 0.01
530 1 0.00
535 1 0.00
538 18 0.03
539 93 0.14
540 29 0.04
542 1 0.00
543 1 0.00
544 2 0.00
546 1 0.00
547 8 0.01
548 6 0.01
552 1 0.00
553 246 0.37
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (526 bp):
TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
CAGTCTAAGATCGAACCGGACCGAGGGTTACGGTAGCAGGATCGACAACATGCAGGGGGAATCAG
ATCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
AGAACCAGACCGAGGGTTCCAGTAGCAGGATCGATAGCACGCAGGGGGAATCGGGCCGATCACCG
ACTTGCGCATTCTGCCTCTCCGATCGGCTGAGAGCCCACACGCCCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGGGTTACAGCAGCAGGATAAACAG
CATGCAGCACAGAGCGGGCCAATCCTCGACTTGCGCATTATGCCTCTTCGATCGGTTGAGCACCC
ACACGT
Found at i:15755018 original size:26 final size:26
Alignment explanation
Indices: 15754971--15755021 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754961 TGACTTAGGC
* *
15754971 ATACAGAGTTTATCCCTGGTCTAAGT
1 ATACAGAGTTCATCCCTAGTCTAAGT
* *
15754997 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATCCCTAGTCTAAG
15755022 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAGTCTAAGT
Found at i:15755204 original size:43 final size:43
Alignment explanation
Indices: 15755143--15755229 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
15755133 CGTTTCGTGG
15755143 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
15755186 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
15755229 G
1 G
15755230 AATTCATTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (43 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
Found at i:15755422 original size:26 final size:26
Alignment explanation
Indices: 15755393--15755445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15755383 GTTGACTTAG
*
15755393 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15755419 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15755445 G
1 G
15755446 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15755770 original size:26 final size:26
Alignment explanation
Indices: 15755734--15755786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15755724 GTTGACTTAG
15755734 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15755760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15755786 G
1 G
15755787 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15755992 original size:26 final size:26
Alignment explanation
Indices: 15755926--15756002 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
15755916 TGGCTTAGGA
*
15755926 ATACGGAGTTCATTACATGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
15755952 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
15755978 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
15756003 ATGGTCCAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:15756158 original size:222 final size:216
Alignment explanation
Indices: 15755734--15756198 Score: 517
Period size: 222 Copynumber: 2.1 Consensus size: 216
15755724 GTTGACTTAG
* **
15755734 GCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
1 GCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * ** *
15755798 CCGAATCGAGGGTTGTGACAGCAGGATCAACAGCACACAAGAAGGGATCGGGCCGATCTTTGGCT
65 CCGAATCGAGGGTAGGGACAACAGGATCAACAGCACACAAGAAGGGATCGGGCCGATCCCTGACT
** * * * *
15755863 TGCGTATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACGGTCATTTCATGGGTTGGCTTAGGAAT
130 TGCACATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGGTCATTTCATGGGTTGACTTAGGAAT
*
15755928 ACGGAGTTCAT-TACATGTCTAA
195 ACGGAGTTCATCCACA-GTCTAA
*
15755950 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GGTCCAGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * ** * *
15756014 CGAGAGTTGCGGCAGTAGGGCCAACAATAGGATCGACAGCATGCATGAAGGGATCGGGTCGATCC
66 CGA-A-TCGAGG--GTAGGG---ACAACAGGATCAACAGCACACAAGAAGGGATCGGGCCGATCC
* * *
15756079 CTGACTTGCACATTCTACCTCT-TCGATCGGCTGAGCGCTCGTACGGTCATTTCATGGGTTGACT
124 CTGACTTGCACATTCTACCTCTCT-GACCGGCTGAGCGCCCGCACGGTCATTTCATGGGTTGACT
* *
15756143 TAGGCATACGGAGTTCATCCCCAGTCTAA
188 TAGGAATACGGAGTTCATCCACAGTCTAA
*
15756172 GCATATGGAGTTCATTCC-TAGTCTAAG
1 GCATACGGAGTTCATTCCAT-GTCTAAG
15756199 ATCGGACCGG
Statistics
Matches: 207, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
215 12 0.06
216 51 0.25
217 4 0.02
219 4 0.02
221 2 0.01
222 132 0.64
223 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (216 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAATCGAGGGTAGGGACAACAGGATCAACAGCACACAAGAAGGGATCGGGCCGATCCCTGACTT
GCACATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGGTCATTTCATGGGTTGACTTAGGAATA
CGGAGTTCATCCACAGTCTAA
Found at i:15756176 original size:26 final size:26
Alignment explanation
Indices: 15756146--15756198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15756136 GTTGACTTAG
15756146 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15756172 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15756198 G
1 G
15756199 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15756723 original size:158 final size:157
Alignment explanation
Indices: 15756378--15756733 Score: 346
Period size: 158 Copynumber: 2.3 Consensus size: 157
15756368 AACCATACAA
* * * * * * *
15756378 AGTTCATTCCCATTCTAAGATCAGACCGTACGGAGGGTTGTGACAGTAGGATCGGTAGCACGCAA
1 AGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGGTAGCACACAA
* * * * * *
15756443 GGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCACACGCC
66 GGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAG-GCCCACACGCC
* *
15756508 CATTTCATGGATTGGCTTAGGCATAGGG
130 CATTTCATGGATTGACTTAGGCATACGG
** * *
15756536 AGTTCATT-TCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGA-CTGGTAGCACA
1 AGTTCATTCTCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGACAGCAGGATC-GGTAGCACA
* * * *
15756598 CAGAGGGGGATTGGGCCTATCCCCGACTTGCGCATTATTCCT-TTCGGTCAGCTCA-GCACCAGC
63 CA-AGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGGC-CCA-C
* * * *
15756661 ACGCTCGTTTCATGGGTTGATTTAGGCATACGG
125 ACGCCCATTTCATGGATTGACTTAGGCATACGG
*
15756694 AGTTCATTCTCAGTCTAAGATCGGATCGGA-TAGAGGGTTG
1 AGTTCATTCTCAGTCTAAGATCAGATCGGACT-GAGGGTTG
15756734 CGGTAGTAGG
Statistics
Matches: 159, Mismatches: 30, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 9 0.06
158 109 0.69
159 39 0.25
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (157 bp):
AGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGGTAGCACACAA
GGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGGCCCACACGCCC
ATTTCATGGATTGACTTAGGCATACGG
Found at i:15757061 original size:26 final size:26
Alignment explanation
Indices: 15757025--15757077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15757015 GTTGACTTAG
*
15757025 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTACATCCCTAGTCTAA
* *
15757051 GCATATGGAGTACATTCCTAGTCTAA
1 GCATACGGAGTACATCCCTAGTCTAA
15757077 G
1 G
15757078 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATCCCTAGTCTAA
Found at i:15757245 original size:26 final size:25
Alignment explanation
Indices: 15757209--15757260 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
15757199 GTTGGCTTAG
15757209 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
15757235 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15757260 G
1 G
15757261 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Done.