Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 101 of 138
Found at i:15757437 original size:26 final size:26
Alignment explanation
Indices: 15757407--15757457 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15757397 TGACTTAGGT
15757407 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
15757433 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15757458 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15757777 original size:26 final size:26
Alignment explanation
Indices: 15757747--15757799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15757737 GTTGACTTAG
*
15757747 GCATACGGGGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
15757773 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15757799 G
1 G
15757800 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15759405 original size:26 final size:26
Alignment explanation
Indices: 15759376--15759428 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15759366 GTTGGCTTAG
15759376 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15759402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15759428 G
1 G
15759429 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15759598 original size:196 final size:196
Alignment explanation
Indices: 15759280--15759656 Score: 503
Period size: 196 Copynumber: 1.9 Consensus size: 196
15759270 CAGGATTGAC
* *
15759280 AGCACGCAGGGGGGATCAGATCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCAC
1 AGCACGCAGGGGGGACCAGATCGATCCCCGACTTGCGCATTCTACCTCTCCGATCCGCTGAGCAC
* * * *
15759345 TCCCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
66 T--CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGG
** * * *
15759410 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCAATAGAATC
129 AGTTCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTACGGCAGCAGGACCAGCAATAGAATC
15759475 AGA
194 AGA
* * *
15759478 AGCACGCAGGGGGGGACC-GAGTCGATCCCCGGCTTGCGCATTCTTCTTCTCCGA-CCGCTGAGG
1 AGCACGCA-GGGGGGACCAGA-TCGATCCCCGACTTGCGCATTCTACCTCTCCGATCCGCTGA--
* *
15759541 GCA-T-GCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCC-TAGTCTAAGCATA
62 GCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTAAGCATA
*
15759603 TGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTACGGCAGCAGGA
126 CGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTACGGCAGCAGGA
15759657 TCGACAGCAT
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
195 1 0.01
196 98 0.62
198 16 0.10
199 39 0.25
200 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
AGCACGCAGGGGGGACCAGATCGATCCCCGACTTGCGCATTCTACCTCTCCGATCCGCTGAGCAC
TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAAATCGGATCAAGGGTTACGGCAGCAGGACCAGCAATAGAATCAG
A
Found at i:15759608 original size:26 final size:26
Alignment explanation
Indices: 15759572--15759624 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15759562 GTTGACTTAG
15759572 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
15759598 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15759624 G
1 G
15759625 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15759942 original size:159 final size:158
Alignment explanation
Indices: 15759647--15759942 Score: 350
Period size: 159 Copynumber: 1.9 Consensus size: 158
15759637 CAAGGGTTAC
** * * *
15759647 GGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTC
1 GGCAGCAGGATCGACAGCATGCAGGGCAGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTC
* * * * *
15759712 TGACCGGCTGTGATCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATG
66 CGACCGGCTGTGAGCCAGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGAAGTTCATCCCATG
*
15759777 TTTAAGCCCCAGTCGAACCGAGGGTTGT
131 TCTAAGCCCCAGTCGAACCGAGGGTTGT
* *
15759805 GGCAGTAGGATCGACAGCATGCAGGGCAGACC-AGCCGATCCTCGACTGTACGCAATTTTGCCTC
1 GGCAGCAGGATCGACAGCATGCAGGGCAGACCGAGCCGATCCTCGACT-TACGC-ATTCTGCCTC
* * * *
15759869 TCCGATCGG-T-TGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACGG-AGTTCATC
64 TCCGACCGGCTGTGAGC-C-AGCACGCCCGTTTCATGGGTTGACTTAGGCATA-GGAAGTTCAT-
15759931 CCCA-GTCTAAGC
125 CCCATGTCTAAGC
15759943 ATATGGAGTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
157 17 0.15
158 35 0.30
159 58 0.50
160 5 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGCAGCAGGATCGACAGCATGCAGGGCAGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTC
CGACCGGCTGTGAGCCAGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGAAGTTCATCCCATG
TCTAAGCCCCAGTCGAACCGAGGGTTGT
Found at i:15759986 original size:539 final size:528
Alignment explanation
Indices: 15759257--15760239 Score: 1237
Period size: 528 Copynumber: 1.8 Consensus size: 528
15759247 AACCGGACCA
* ** * * *
15759257 AGGGTTGAGGCAGCAGGATTGACAGCACGCAGGGGGGATCAGATCGATCCCCGACTTGCGCATTC
1 AGGGTTGAGGCAGCAGGATCGACAGCACGCAGGGCAGACCAGACCGATCCCCGACTTACGCATTC
* * *
15759322 TACCTCTCCGATCGGCTGAGCACTCCCGCATGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGT
66 TACCTCTCCGATCGGCTGAGCACT-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
15759387 TCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCG
130 TCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG-T---
* * * *
15759452 GTAGCAGGACCAGCAATAGAATCAGA-AGCACGCAGGGGGGGACCGAGTCGATCCCCGGCTTGCG
191 G--GC-CG--CAGC-A-AG-ATC-GACAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCG
** * * * *
15759516 CATTCTTCTTCTCCGACCG-CTGAGGGCATGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGG
247 CATTCGGCCTCTCCGACCGACTGAGCGCACGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGG
* * *
15759580 AGTTCATCCC-TAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAA-TCGGATCAAGGG
312 AGTTCATCCCAT-GTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCAAACT-AGATCAAGAG
** * *
15759643 TTACGGCAGCAGGATCGACAGCATGCA-GGGGGGACCGGG-CTGATCCTCGACTTGCGCATTCTG
374 TTACGGCAGCAGGATCGACAGCACACAGGGGGGGACCGGGTC-GATCCCCGACTTACGCATTCTG
15759706 CCTCTCTGACCGGCTGTGATCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCAT
438 CCTCTCTGACCGGCTGTGATCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCAT
15759771 TCCATGTTTAAGCCCCAGTCGAACCG
503 TCCATGTTTAAGCCCCAGTCGAACCG
* * * *
15759797 AGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGCAGACCAG-CCGATCCTCGACTGTACGCAAT
1 AGGGTTGAGGCAGCAGGATCGACAGCACGCAGGGCAGACCAGACCGATCCCCGACT-TACGC-AT
* * * * *
15759861 TTTGCCTCTCCGATCGGTTGAGCGCT-CGCACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAG
64 TCTACCTCTCCGATCGGCTGAGCACTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
*
15759925 TTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGG
129 TTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGG
* *
15759989 CCGCAGCAAGATCGACAGCACATAGGAGGGGACCGAGCCGGTCCCCGGCTTGCGCATTCGGCCTC
193 CCGCAGCAAGATCGACAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCGGCCTC
* * * * * * *
15760054 TCTGGCTGACTGAGCGCCCGCTCGGTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
258 TCCGACCGACTGAGCGCACGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCA
* * *
15760119 TGTCTAAGCATACGGGGTTCATTCCAGTCTAAGATCAGACTAGATCGAGAGTTACGGCAGCAGGA
323 TGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAACTAGATCAAGAGTTACGGCAGCAGGA
* * *
15760184 TCGGCAGCACACAGGGGGGGATCGGGTCGATCCCCGACTTATGCATTCTGCCTCTC
388 TCGACAGCACACAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTC
15760240 CAGCCAACCT
Statistics
Matches: 381, Mismatches: 53, Indels: 30
0.82 0.11 0.06
Matches are distributed among these distances:
526 2 0.01
527 95 0.25
528 107 0.28
529 3 0.01
530 4 0.01
532 1 0.00
533 2 0.01
535 1 0.00
538 1 0.00
539 99 0.26
540 42 0.11
541 24 0.06
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (528 bp):
AGGGTTGAGGCAGCAGGATCGACAGCACGCAGGGCAGACCAGACCGATCCCCGACTTACGCATTC
TACCTCTCCGATCGGCTGAGCACTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCCG
CAGCAAGATCGACAGCACACAGGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCGGCCTCTCC
GACCGACTGAGCGCACGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAACTAGATCAAGAGTTACGGCAGCAGGATCG
ACAGCACACAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTGTG
ATCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTTTAAGCCCCAG
TCGAACCG
Found at i:15760138 original size:26 final size:25
Alignment explanation
Indices: 15760100--15760151 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15760090 GTTGGCTTAG
*
15760100 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
15760126 GCATACGGGGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15760151 G
1 G
15760152 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15760333 original size:26 final size:26
Alignment explanation
Indices: 15760297--15760349 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15760287 GTTAACTTAG
* *
15760297 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
15760323 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
15760349 G
1 G
15760350 ATTGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:15760435 original size:197 final size:197
Alignment explanation
Indices: 15760079--15760436 Score: 481
Period size: 197 Copynumber: 1.8 Consensus size: 197
15760069 GCCCGCTCGG
** * * *
15760079 TCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGGGTTCATTCC
1 TCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCATGTCTAAGCATACGGAGTTAATTCC
* *
15760144 AGTCTAAGATCAGACTAGATCGAGAGTTACGGCAGCAGGATCGGCAGCACACAGGGGGGGATCGG
66 AGTCTAAGATCAGACTAGACCGAGAGTTACGGCAGCAGGATCAGCAGCACACAGGGGGGGATCGG
* *
15760209 GTCGATCCCCGACTTATGCATTCTGCCTCTCCAGCCAACCTCTCCGGCCGGTTGAACGCCTGTAC
131 GCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCAACCTCTCCGGCCGGTTGAACGCCTGTAC
15760274 GC
196 GC
15760276 TCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTAATTC
1 TCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTAATTC
* * * ** ** *
15760340 CTAGTCTAAGAT-TGAACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGTA-GGGGTGAT
65 C-AGTCTAAGATCAG-ACTAGACCGAGAGTTACGGCAGCAGGATCAGCAGCACACAGGGGGGGAT
* *
15760403 CGGGCCGATCACCCG-CTTGCGCATTTTGCCTCTC
128 CGGGCCGATC-CCCGACTTACGCATTCTGCCTCTC
15760437 TGACCGGCTG
Statistics
Matches: 138, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
197 89 0.64
198 49 0.36
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
TCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCATGTCTAAGCATACGGAGTTAATTCC
AGTCTAAGATCAGACTAGACCGAGAGTTACGGCAGCAGGATCAGCAGCACACAGGGGGGGATCGG
GCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCAACCTCTCCGGCCGGTTGAACGCCTGTAC
GC
Found at i:15760531 original size:725 final size:718
Alignment explanation
Indices: 15758924--15760515 Score: 1653
Period size: 725 Copynumber: 2.2 Consensus size: 718
15758914 TAGGATTGGT
* * * * * * **
15758924 AGCACGCAGGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCA
1 AGCACGCA-GGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAG-A
* * * * * **
15758989 -CCTGCATGCTCATTTCA-TGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAG
64 GCCAGCACGCCCGTTT-AGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAG
* * ** *
15759052 CC-AGACCGAGGGTTGTGGTAGTAGGATCGGTAGCAAGAACGGTAGCACGCAGAAGGGGACCGGG
128 CCGA-ACCGAGGGTTGTGGCAGTAGGATC-G-A-C-AG--C-AT-GCA-G--G--GCAGACC-AG
* ** * **
15759116 CTGATCCTCGACTTGT--GC-ATTACGCCTCTCCGACTGGTTGAGCGCCCGCACGTTCATTTGGT
178 CCGATCCTCGAC-TGTACGCAATTTTGCCTCTCCGACTGGTTGAGCGCCCGCACGCTCATTTCAT
* *
15759178 GGGTTGACTTAGGCATACAGAGTTCATCCCTAATCTAAGCATATGGAGTTCATTCCCTGTCTAAG
242 GGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAG
* * * * * * *
15759243 ATCGAACCGGACCAAGGGTTGAGGCAGCAGGATTGACAGCACGCAGGGGGGATCAGATCGATCCC
307 ATCGAACCGGACCAAGGGTGGACGCAGCAAGATCGACAGCACACAGGGGGGACCAGACCGATCCC
* * * *
15759308 CGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCACTCCCGCATGCTCGTTTCTTGGGTTGGCT
372 CGACTTGCGCATTCGACCTCTCCGATCGACTGAG-ACGCCCGCATGCTCGTTTCGTGGGTTGGCT
* *
15759373 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
436 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* *
15759438 GATCGAGGGTTGCGGTAGCAGGACCAGCAATAGAATCAGAAGCACGCAGGGGGGGACCGAGTCGA
501 GATCGAGAGTT---GTAGCAGGA-CAGC-A-AGAATCAGAAGCACACAGGGGGGGACCGAGTCGA
* * ** * *
15759503 TCCCCGGCTTGCGCATTCTTCTTCTCCGACCGCTGAGGGCATGCACGTTCGTTTCGTGGGTTGAC
560 TCCCCGACTTACGCATTCTTCTTCTCCGACCGCTGAACGCATGCACGCTCGTTTCGTGGGTTAAC
* * *
15759568 TTAGGCATATGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATC
625 TTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAAATC
*
15759633 GGATCAAGGGTTACGGCAGCAGGATCGAC
690 GGACCAAGGGTTACGGCAGCAGGATCGAC
* * * * *
15759662 AGCATGCAGGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGACCGGCTGTGATC
1 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGAGC
* * * *
15759727 CAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTTTAAGCCCCAGTCG
66 CAGCACGCCCGTTTAGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCG
15759792 AACCGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGCAGACCAGCCGATCCTCGACTGTACG
131 AACCGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGCAGACCAGCCGATCCTCGACTGTACG
* * *
15759857 CAATTTTGCCTCTCCGA-TCGGTTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCGTAC
196 CAATTTTGCCTCTCCGACT-GGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* * * * *
15759921 GGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
260 AGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGG
* * * * *
15759986 TGGCCGCAGCAAGATCGACAGCACATAGGAGGGGACC-GAGCCGGTCCCCGGCTTGCGCATTCGG
325 TGGACGCAGCAAGATCGACAGCACACAGG-GGGGACCAGA-CCGATCCCCGACTTGCGCATTCGA
* * * *
15760050 CCTCTCTG-GCTGACTGAG-CGCCCGC-TCGGTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
388 CCTCTCCGATC-GACTGAGACGCCCGCAT-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
15760112 CATTCCATGTCTAAGCATACGGGGTTCATT-CCAGTCTAAGATCAGA-CTAGATCGAGAG-T-TA
451 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGATCGAGAGTTGTA
* * * * * *
15760173 -C-GG-CAGC-AGGATCGGCAGCACACAGGGGGGGATCGGGTCGATCCCCGACTTATGCATTCTG
515 GCAGGACAGCAAGAATCAGAAGCACACAGGGGGGGACCGAGTCGATCCCCGACTTACGCATTCT-
* * * *
15760234 CCTCTCCAGCCAACCTCTCCGGCCGGTTGAACGCCTGTACGCTCGTTTCGTGGGTTAACTTAGGC
579 --TCT----------TCTCCGACC-GCTGAACGCATGCACGCTCGTTTCGTGGGTTAACTTAGGC
* **
15760299 ATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCTAGTCTAAGATTGAA-CTGGACC
631 ATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAAATC-GGACC
* **
15760363 GAGGGTTGTGGCAGCAGGATC-AGC
695 AAGGGTTACGGCAGCAGGATCGA-C
* * * * *
15760387 AGCACGTAGGGGTGATCGGGCCGATCACCCG-CTTGCGCATTTTGCCTCTCTGACCGGCTGAGCG
1 AGCACGCAGGGGGGACCGGGCCGATC-CCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGAG
* * *
15760451 CCCGTACGCCCGTTTAGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
65 CCAGCACGCCCGTTTAGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCC
15760516 AGATCGAGTG
Statistics
Matches: 715, Mismatches: 110, Indels: 71
0.80 0.12 0.08
Matches are distributed among these distances:
711 44 0.06
714 7 0.01
716 2 0.00
717 1 0.00
718 2 0.00
722 5 0.01
723 36 0.05
724 85 0.12
725 350 0.49
726 42 0.06
728 1 0.00
729 3 0.00
730 1 0.00
731 1 0.00
733 2 0.00
734 1 0.00
735 1 0.00
736 2 0.00
737 121 0.17
738 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (718 bp):
AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGAGC
CAGCACGCCCGTTTAGTGAGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCG
AACCGAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGCAGACCAGCCGATCCTCGACTGTACG
CAATTTTGCCTCTCCGACTGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
GAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGT
GGACGCAGCAAGATCGACAGCACACAGGGGGGACCAGACCGATCCCCGACTTGCGCATTCGACCT
CTCCGATCGACTGAGACGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGAGTTGTAGCAGGA
CAGCAAGAATCAGAAGCACACAGGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTTCTTCTC
CGACCGCTGAACGCATGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCCAGT
CTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTACGGCAGCAGGATC
GAC
Found at i:15763185 original size:26 final size:26
Alignment explanation
Indices: 15763134--15763186 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15763124 GTTGACTTAG
*
15763134 GCATACGAAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAACCTAA
* * *
15763160 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAACCTAA
15763186 G
1 G
15763187 ATTGGCCCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAACCTAA
Found at i:15763480 original size:159 final size:158
Alignment explanation
Indices: 15763266--15763663 Score: 394
Period size: 159 Copynumber: 2.5 Consensus size: 158
15763256 TTGTGTATTC
* * * * * * *
15763266 TGCCTCTCCGATCGGTTGAGCGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTC
1 TGCCTCTCCGATCGGATCAACGCTCGTACGCTCATTTCGTTGGTTGGCTTAGGCATAGAGAGTTC
* ** ** *
15763331 ATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGA-CTGGCAGCACACAGAGG
66 ATTCCATGTCTAAGCCC-AGACCGAACCGAGGGTTACGGCAGCAGGATC-GACA--ACACAGAGG
*
15763394 G-GGATCGGGCCGATCCCCGACTTGTGCATTA
127 GAGGATCGGGCCGATCCCCGACTTATGCATTA
* * *
15763425 TGCCTCTCCGGTCGGATCAACGC-CTGTACGCTCATTTCGTTGGTTGACTTAGGCATACAGAGTT
1 TGCCTCTCCGATCGGATCAACGCTC-GTACGCTCATTTCGTTGGTTGGCTTAGGCATAGAGAGTT
** * * *
15763489 CATTCC-TAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGCAGGATCGACAACACGGAGGGA
65 CATTCCAT-GTCTAAGCCCAGACCGAACCGAGGGTTACGGCAGCAGGATCGACAACACAGAGGG-
* ** * *
15763553 AGGATCGGGCCGGTCCTTGGCTTATGCATTC
128 AGGATCGGGCCGATCCCCGACTTATGCATTA
* * * * *
15763584 TGCCTCTCCGATCGGCTGAGCGCTCGTACGCTCGTTTCATTGGTTGGCTTAGGCATACG-GAGTT
1 TGCCTCTCCGATCGGATCAACGCTCGTACGCTCATTTCGTTGGTTGGCTTAGGCATA-GAGAGTT
15763648 CATTCCATGTCTAAGC
65 CATTCCATGTCTAAGC
15763664 ATACCGAGTT
Statistics
Matches: 194, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.05
158 4 0.02
159 178 0.92
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TGCCTCTCCGATCGGATCAACGCTCGTACGCTCATTTCGTTGGTTGGCTTAGGCATAGAGAGTTC
ATTCCATGTCTAAGCCCAGACCGAACCGAGGGTTACGGCAGCAGGATCGACAACACAGAGGGAGG
ATCGGGCCGATCCCCGACTTATGCATTA
Found at i:15763667 original size:26 final size:26
Alignment explanation
Indices: 15763636--15763688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15763626 GTTGGCTTAG
*
15763636 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
15763662 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15763688 G
1 G
15763689 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15764394 original size:343 final size:344
Alignment explanation
Indices: 15763566--15764394 Score: 940
Period size: 343 Copynumber: 2.4 Consensus size: 344
15763556 ATCGGGCCGG
* * * * * *
15763566 TCCT-TGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGTACGCTCGTTTCAT-TG-GT
1 TCCTCTGGCTTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTT--TGTGAGT
*
15763628 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCA
64 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCA
* * * ** *
15763693 AACCAGACTAAGGGTTGCGGTAGCAGGATCAACAGCATGCAGGGGGGACCGGGCCGATCCCAAGC
129 GACCAGACTGAGGGTTGCAGTAGCAGGATCAACAGCACACAGGAGGGACCGGGCCGATCCCAAGC
* * * * *
15763758 TTGCACATTCTGCCTCTCCGACCAGTTGAGCACCCGCACGTTCGTTTTGTGGGTTGGCTTAGGCA
194 TTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCA
15763823 TACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGACGGATCGACAGCA
259 TACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGACGGATCGACAGCA
* *
15763888 CGTAAAGGGGGGCCGGGCTGA
324 CGTAAAGGGGGACCGGACTGA
* ** * * * * * *
15763909 TCCTCAGG-TTCCGCATTATGCCTCTTCGACAGGTTGAGTGCCTGCACACTCGTTTCGTCAGTTG
1 TCCTCTGGCTTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTTTGTGAGTTG
* * * * * * *
15763973 ACTTAGGCATACAAAGTTCATCCCCA-ATCTAAGCATGCCGAGTTCATTCCTAGTCTAAGATCGG
66 GCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAG
* * * * * **
15764037 ATCAGATTGAGGGTTGCAGTAGCAGGATCGATAGCACACAGGAGGGACCGGGCTGATCCCCGGCT
130 ACCAGACTGAGGGTTGCAGTAGCAGGATCAACAGCACACAGGAGGGACCGGGCCGATCCCAAGCT
*** **
15764102 TGTGGATTCTGCCTCTCCGACC-GACTGAGTGCCCACACGC-CTGTTTCGTGGGTTGGCTTAAGC
195 TGCACATTCTGCCTCTCCGACCAG-CTGAGCACCCACACGCTC-GTTTCGTGGGTTGGCTTAAGC
* * * * *
15764165 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG-TGAGATCGGA-A
258 ATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGACG-GATC-GACA
* **
15764228 GCACGTAGAGGGGGACTTGACTGA
321 GCACGTAAAGGGGGACCGGACTGA
* *
15764252 TCC-CTGGCTTGTACATTATGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTTTGTGAGTTG
1 TCCTCTGGCTTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTTTGTGAGTTG
* * * * *
15764316 GCTTAGGCATATAGAGTTCATTCCATGTCTAGGCGTACGGAGTTCATTCCCAGTCTAAGGTCAGA
66 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGA
* *
15764381 CCGGACCGAGGGTT
131 CCAGACTGAGGGTT
15764395 ATCACAACCG
Statistics
Matches: 394, Mismatches: 82, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
342 10 0.03
343 377 0.96
344 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (344 bp):
TCCTCTGGCTTATGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACACTCGTTTTGTGAGTTG
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACTGAGGGTTGCAGTAGCAGGATCAACAGCACACAGGAGGGACCGGGCCGATCCCAAGCTT
GCACATTCTGCCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATA
CGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAGGGTTGTGGCAGACGGATCGACAGCACG
TAAAGGGGGACCGGACTGA
Found at i:15764877 original size:26 final size:26
Alignment explanation
Indices: 15764841--15764893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15764831 GTTGGCTTAG
15764841 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15764867 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15764893 G
1 G
15764894 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15765713 original size:158 final size:159
Alignment explanation
Indices: 15765433--15765962 Score: 479
Period size: 158 Copynumber: 3.4 Consensus size: 159
15765423 GTAGAGCGTT
* * * * * **
15765433 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCAAGTCTAAG-ATTAGA-CT
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATC-
* * ** * * * *
15765495 GGACCGATGGTTGCGGCAATAGGATCGGCAGCACGC--AGGGGAGATCGGGTCGATCCTCGGCTT
65 GGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAAAAGGG-G-TCAGGTCGATCCTCGGCTT
*
15765558 ACGCATTCTGCCTCTCTGACCGACTGAGCGCC
128 ACGCATTCTGCCTCTCCGACCGACTGAGCGCC
* * * * * *
15765590 CACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCG
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCG
** * * *
15765654 GACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACACAAAAGGGGATCAGG-CTATCCTCGGCTTA
66 GACCGAGGGTTGCAGCAGCAGGATC-GACAGCACACAAAAGGGG-TCAGGTCGATCCTCGGCTTA
* * *
15765717 CGCATTATGCCTCTCCGACCGACTCAACGCC
129 CGCATTCTGCCTCTCCGACCGACTGAGCGCC
* * * *
15765748 CGCACACTCATTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATC
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATC
* * * ** * * ** **
15765811 GGACCGAGGGTTGCAGTAGTAGGATCGACAGCTCACAGGAGGGGTCGGGTCGATCCCCAACTTGT
65 GGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAAAAGGGGTCAGGTCGATCCTCGGCTTAC
*
15765876 GCATTCTGCCTCTCCGACC-AGCTGAGTGCC
130 GCATTCTGCCTCTCCGACCGA-CTGAGCGCC
* * *
15765906 CGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCA
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15765963 TACGGAGTTC
Statistics
Matches: 300, Mismatches: 60, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
157 39 0.13
158 243 0.81
159 14 0.05
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCG
GACCGAGGGTTGCAGCAGCAGGATCGACAGCACACAAAAGGGGTCAGGTCGATCCTCGGCTTACG
CATTCTGCCTCTCCGACCGACTGAGCGCC
Found at i:15766344 original size:26 final size:26
Alignment explanation
Indices: 15766315--15766365 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15766305 TTAACTTAGG
*
15766315 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACAGAGTTCATTCCCA-GTCTAAT
15766341 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
15766366 GATCAGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:15766629 original size:380 final size:381
Alignment explanation
Indices: 15765903--15766751 Score: 989
Period size: 380 Copynumber: 2.2 Consensus size: 381
15765893 CCAGCTGAGT
* * ** *
15765903 GCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGG
1 GCCCGCACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACAG
** ** * * *
15765968 AGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTAATAGCAGGACCAGCAGTAGGATT
66 AGTTCATTCCCAGTCTAAGATCGAATCAAACCGAGGGTTACAACAGCAAGACCAGCAGTAGGATG
*
15766033 AGCAACACGCAAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGGTTGA
131 AGCAACACGCAAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGTTGA
** * * *
15766098 GTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
196 GCACCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCA
* * *
15766163 GTCAGATAGAAGGTTGTGGTAGCAGGACCGGCAACAGGATCGACAGCACAAAGAGGGGGATCGGG
261 GTCAGACAGAAGGTTGTGGTAGCAGGACCGACAACAGGATCGACAGCACAAAGAGGGGGATCAGG
** *
15766228 CTAATCTCTGGCTTACACATTTTGCCT-TTCGACCGACCTCTCTGACTAGTTGAAC
326 CTAATCTCTAACTTACACATTTTGCCTCTCCGACCGACCTCTCTGACTAGTTGAAC
* * *
15766283 GCCCGTACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAATCATACAG
1 GCCCGCACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACAG
* *
15766348 AGTTCATTCCCAGTCTAAGATC-AGATCAAACCTG-GGGTTACAGCAGTAAGACCAGCAGTAGGA
66 AGTTCATTCCCAGTCTAAGATCGA-ATCAAACC-GAGGGTTACAACAGCAAGACCAGCAGTAGGA
* * **
15766411 TCGA-TAACACGC-AGGAGGGGATCGGGCCGATCCCC-AGCTTACGCATTCTACCTTTTCGGTCG
129 T-GAGCAACACGCAAGG-GGGGATCGGGCCGATCCCCGA-CTTACGCATTCTACCTCTTCGACCG
15766473 GTTGAGCACCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAG
191 GTTGAGCACCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAG
* * * * * * **
15766538 CCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATTGACAGCACGCAGAGGGGGA
256 CCCCAGTCAGACAGAAGGTTGTGGTAGCAGGACCGACAACAGGATCGACAGCACAAAGAGGGGGA
* * * * * *
15766603 -CTAGGCTGATC-CTTAACTTGCACATTTTGCCTCTCCGACTGACCTCTC-CAGCTCGCTGAAC
321 TC-AGGCTAATCTC-TAACTTACACATTTTGCCTCTCCGACCGACCTCTCTGA-CTAGTTGAAC
* * * * * * * * * * * * * * *
15766664 ACCCACACGCCCGTTTCATGGGTTGACTTCGACATATGAACTTCATCCCCA-GTTTAAGCATACA
1 GCCCGCACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCAT-TCAATGTCTAAGCATACA
15766728 GAGTTCATTCCCAGTCTAAGATCG
65 GAGTTCATTCCCAGTCTAAGATCG
15766752 GACTGGACCG
Statistics
Matches: 395, Mismatches: 63, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
379 7 0.02
380 295 0.75
381 90 0.23
382 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24
Consensus pattern (381 bp):
GCCCGCACGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCGAATCAAACCGAGGGTTACAACAGCAAGACCAGCAGTAGGATG
AGCAACACGCAAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTACCTCTTCGACCGGTTGA
GCACCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCA
GTCAGACAGAAGGTTGTGGTAGCAGGACCGACAACAGGATCGACAGCACAAAGAGGGGGATCAGG
CTAATCTCTAACTTACACATTTTGCCTCTCCGACCGACCTCTCTGACTAGTTGAAC
Found at i:15768290 original size:26 final size:26
Alignment explanation
Indices: 15768254--15768306 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768244 GTTGGCTTAG
15768254 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15768280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15768306 G
1 G
15768307 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15769010 original size:26 final size:26
Alignment explanation
Indices: 15768974--15769026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768964 GTTGACTTGG
15768974 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15769000 GCATATGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15769026 G
1 G
15769027 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15769635 original size:26 final size:26
Alignment explanation
Indices: 15769599--15769651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15769589 GTTGACTTGG
15769599 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15769625 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15769651 G
1 G
15769652 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15769684 original size:625 final size:625
Alignment explanation
Indices: 15768425--15770290 Score: 3384
Period size: 625 Copynumber: 3.0 Consensus size: 625
15768415 TGGGGGTTCC
* * *
15768425 GACGATTGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTT
1 GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
15768490 ATTGG-CCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
15768554 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
131 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
15768619 AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
196 AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
15768684 ACCTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAAA
261 ACCTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAAA
* *
15768749 GTTTGAAAAATTGTAAAAAATAGAAAACGGGTTGTCTTGCCACAAAACTTCACATCAAGGCGTAG
326 GTTTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATCAAGGCGTAG
15768814 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGC
391 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGC
*
15768879 TTGAACCCACCTACCACTCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCGGATGAGCG
456 TTGAACCCACCTACCACTCGTTCGATCCCCGGGTTGCGCATCCTGCCTCTCTAGTCGGATGAGCG
*
15768944 TCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGA
521 TCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
15769009 GTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGATGT
586 GTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGATGT
15769049 GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1 GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
15769114 ATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
15769179 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
131 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
15769244 AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
196 AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
15769309 ACCTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAAA
261 ACCTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAAA
15769374 GTTTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATCAAGGCGTAG
326 GTTTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATCAAGGCGTAG
15769439 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGC
391 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGC
*
15769504 TTGAACCCACCTACCACTCGTTCGATCCCCGGGTTGTGCATCCTGCCTCTCTAGTCGGATGAGCG
456 TTGAACCCACCTACCACTCGTTCGATCCCCGGGTTGCGCATCCTGCCTCTCTAGTCGGATGAGCG
15769569 TCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
521 TCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
15769634 GTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGATGT
586 GTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGATGT
15769674 GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1 GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
15769739 ATTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
66 ATTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
15769804 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAA
131 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
*
15769869 AATCTTCTCCACTTCGATCTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATC
196 AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
* * *
15769933 ACCTCTGCTAAATTTGGGGACAAACTCG-TTCTAAAAGAATTTTAAAAAATCTTGAATCGCAAAA
261 ACCTCTACTAAATTTGGGGACAAACT-GTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAA
* *
15769997 AGTTTCAAAAATTGTAAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATCAAGGCGTA
325 AGTTTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATCAAGGCGTA
* *
15770062 GGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAATGTG
390 GGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTG
* * * *
15770127 CTTGAACCCACCTACCACCCGTTCGATCCCC-GG-TGCGCATCCTACCTCTCTAGTCAGTTGAGC
455 CTTGAACCCACCTACCACTCGTTCGATCCCCGGGTTGCGCATCCTGCCTCTCTAGTCGGATGAGC
* * * ** * *
15770190 GTCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTC-AAGCATACGG
520 GTCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
15770254 AGTTCCTTCCCAGTCTAAGATTAGACTAGACCGAGGG
585 AGTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGG
15770291 TTACGACAGT
Statistics
Matches: 1205, Mismatches: 35, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
621 45 0.04
622 73 0.06
623 2 0.00
624 315 0.26
625 770 0.64
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (625 bp):
GACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAA
AATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTTGTGCATGCGAACAAAAATACAAGGATC
ACCTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGGATCGCAAAAA
GTTTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATCAAGGCGTAG
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGC
TTGAACCCACCTACCACTCGTTCGATCCCCGGGTTGCGCATCCTGCCTCTCTAGTCGGATGAGCG
TCCGCACGCTCATTTTATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGATGT
Found at i:15771972 original size:26 final size:26
Alignment explanation
Indices: 15771922--15771974 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15771912 GTTGGCTTAG
*
15771922 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
15771948 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
15771974 G
1 G
15771975 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15773818 original size:158 final size:157
Alignment explanation
Indices: 15773394--15773844 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 157
15773384 CAGGACCAGC
* * * *
15773394 AGCAGGATCGGTAGCACGCAGGAGGGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACGCAGGA-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-
* * * * *
15773459 GTTTGCTGAGAGCCTGCACGC-CAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
64 GCTGGCTGAGAGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * **
15773523 CTAAGATGCAGCCGGACTGAGGGTTGTGGT
128 CTAAGATGCAGCCAGACCGAGGGTTGCAGT
* * * * *
15773553 AG-TGGAACCGACAGCACGCAAAGG-GGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTC
1 AGCAGG-ATCGATAGCACGC--AGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * * * *
15773616 CGACAGGCTCAGCGCCCGCACCCTCATTTCGTGGGTTGAG-TTAGGCTTACGGAGTTAATTCCCA
63 CG-CTGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTG-GCTTAGGCATACGGAGTTCATT-CCA
*
15773680 -GTCTAAGATTGGA-CCAGACCGAGGGTTGCAGT
125 TGTCTAAGA-TGCAGCCAGACCGAGGGTTGCAGT
* * * *
15773712 AGCAAGATCGATAGCACGCAGGAGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCACTCCAG
1 AGCAGGATCGATAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-G
* ** *
15773777 CTGGCTGAGTGCCCATATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
65 CTGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
15773842 AAG
130 AAG
15773845 CATCCGAAGT
Statistics
Matches: 236, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
157 7 0.03
158 91 0.39
159 126 0.53
160 9 0.04
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCAGGATCGATAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGC
TGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGATGCAGCCAGACCGAGGGTTGCAGT
Found at i:15773847 original size:26 final size:26
Alignment explanation
Indices: 15773818--15773870 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15773808 GTTGGCTTAG
*
15773818 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15773844 GCATCCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15773870 G
1 G
15773871 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15774510 original size:159 final size:158
Alignment explanation
Indices: 15774066--15774649 Score: 338
Period size: 158 Copynumber: 3.7 Consensus size: 158
15774056 ACGTAGAGGA
** * * * * * * * * * *
15774066 GGACCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTACAGCCGGCTGAGCACCCGCATGCTCAT
1 GGACCGGGCCAATCCCCATCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGCTCGT
* * * * * * * *
15774131 TTTAAGGGTTGACTGAGGCATACGGAGTTCATCCCCA-GTCTAAGATCGGATCAAACTGAGGGCT
66 TTCATGGGTTGACTTAGGCATACAGAGTTCAT-TCCATGTCTAAGATCGGACCAGACTGAGGGTT
* *** ** **
15774195 GC-GATAGCAGGGTTGATAGCACGTAGGGG
130 GCAG-CAGCAGGACCGCCAGCACACAGGGG
** * * * * * * * * *
15774224 GGACTAGGCCGATCCCCGAT-TTGCGCATTCTGCCTCTCCGACCGATTGAGCACCCGCAC-ATCC
1 GGACCGGGCCAATCCCC-ATCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGCT-C
** * ** * ** * * **
15774287 GTTTTGTGGGTT-ATCTTGGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCAAGG
64 GTTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGA-CCAGACTGAGG
** * * **
15774350 GTTGTGGCAGCGGGACCGGCAGCACGTAGAGGG
127 GTTGCAGCAGCAGGACCGCCAGCACACAG-GGG
* ** *
15774383 GGATCGGGCCAATCCCCGA-CTTGCGCATTATGCCTCTTCGGCCGACTCAGGGCCCGTACGCTCG
1 GGACCGGGCCAATCCCC-ATCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGCTCG
* *
15774447 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGT
65 TTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGGACCAGACTGAGGGT
* * **
15774511 TGCAGTAGTAGGATTGCCAGCACACAGGGG
129 TGCAGCAGCAGGACCGCCAGCACACAGGGG
* * * * ** * *
15774541 GGACCGGGCCGATCCCCATCTTGCGCTTTCTGCCTCTTTGGCCGGTTGAACGCCCGCACGGTCGT
1 GGACCGGGCCAATCCCCATCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGCTCGT
* *
15774606 TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
15774650 GATACGGAGT
Statistics
Matches: 325, Mismatches: 87, Indels: 28
0.74 0.20 0.06
Matches are distributed among these distances:
157 11 0.03
158 194 0.60
159 113 0.35
160 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGACCGGGCCAATCCCCATCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGACCAGACTGAGGGTTG
CAGCAGCAGGACCGCCAGCACACAGGGG
Found at i:15774542 original size:317 final size:317
Alignment explanation
Indices: 15773947--15774649 Score: 741
Period size: 317 Copynumber: 2.2 Consensus size: 317
15773937 CGGCTGAGCG
* * * * * **
15773947 CCCGCACGCTCGTTTCGTGGGCTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCCTAACC
1 CCCGCACGATCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
15774012 GGACCGAA-GGTTATGGCAGCAGGACCGGTAGTGGGATCGACAGCACGTAGAGGAGGACCGGGCT
66 GGACC-AAGGGTTGTGGCAGCGGGACC--------G---G-CAGCACGTAGAGGAGGACCGGGCC
* * * * * *
15774076 GATCCCCAGCTTGTGCATTATGCCTCTACAGCCGGCTGAGCACCCGCATGCTCATTTTAAGGGTT
118 AATCCCCAGCTTGCGCATTATGCCTCTACAGCCGACTCAGCACCCGCACGCTCATTTCAAGGGTT
*
15774141 GACTGAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGATCAAACTGAGGGCTGCGATAGCAGG
183 GACTGAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGACCAAACTGAGGGCTGCGATAGCAGG
* * ** *
15774206 GTTGATAGCACGTAGGGGGGACTAGGCCGATCCCCGAT-TTGCGCATTCTGCCTCTCCGACCGAT
248 ATTGACAGCACACAGGGGGGACCAGGCCGATCCCC-ATCTTGCGCATTCTGCCTCTCCGACCGAT
*
15774270 TGAGCA
312 TGAACA
* * * **
15774276 CCCGCAC-ATCCGTTTTGTGGGTTATCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 CCCGCACGAT-CGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGT
* *
15774340 CGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGGCCAATCCCC-GACT
65 CGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGAGGACCGGGCCAATCCCCAG-CT
* * ** * * * * *
15774404 TGCGCATTATGCCTCTTCGGCCGACTCAGGGCCCGTACGCTCGTTTCATGGGTTGACTTATGCAT
129 TGCGCATTATGCCTCTACAGCCGACTCAGCACCCGCACGCTCATTTCAAGGGTTGACTGAGGCAT
* * * * *
15774469 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC-AGTAGTAGGATTGCCAGCA
194 ACGGAGTTCATCCCCAGTCTAAGATCGGACCAAACTGAGGGCTGCGA-TAGCAGGATTGACAGCA
* * ** * * *
15774533 CACAGGGGGGACCGGGCCGATCCCCATCTTGCGCTTTCTGCCTCTTTGGCCGGTTGAACG
258 CACAGGGGGGACCAGGCCGATCCCCATCTTGCGCATTCTGCCTCTCCGACCGATTGAACA
* *
15774593 CCCGCACGGTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CCCGCACGATCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
15774650 GATACGGAGT
Statistics
Matches: 310, Mismatches: 58, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
316 4 0.01
317 228 0.74
318 2 0.01
321 1 0.00
328 3 0.01
329 72 0.23
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
CCCGCACGATCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
GGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGAGGACCGGGCCAATCCCCAGCTTG
CGCATTATGCCTCTACAGCCGACTCAGCACCCGCACGCTCATTTCAAGGGTTGACTGAGGCATAC
GGAGTTCATCCCCAGTCTAAGATCGGACCAAACTGAGGGCTGCGATAGCAGGATTGACAGCACAC
AGGGGGGACCAGGCCGATCCCCATCTTGCGCATTCTGCCTCTCCGACCGATTGAACA
Found at i:15774661 original size:26 final size:26
Alignment explanation
Indices: 15774625--15774675 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15774615 TGGCTTAGGC
15774625 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
*
15774651 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15774676 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:15775677 original size:159 final size:156
Alignment explanation
Indices: 15775410--15775869 Score: 415
Period size: 159 Copynumber: 2.9 Consensus size: 156
15775400 GGATCGGACC
* * * * * * * * *
15775410 GAGGGTTACGGTAGCAGGATCGACAGCATGTAGGGGGATCGAGTCAATCCCCGGCTTGCGCATTC
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGATCGGGCCGATCACCGGCTTGCGCATTC
* * * * * * * *
15775475 TACCTCTCCGGTCGGCTGAGCGCCCGCAGGCCCGTGTCATGGGTTAGCCTAGGCATAGGGAGTTC
66 TGCCTCTTCGGTCGGCTCAGCGCCCTCACGCTCGTTTCATGGGTT-GCCTAGGCATACGGAGTTC
* **
15775540 ATT-CCATGTCTAAGCCCCAG-CCGGACT
130 ATTCCCA-GTCTAAG-ACCAGACCAAACT
* ** ** ** *
15775567 GAGGGTTGTGGCAGTGGGACCGGTAGCACGCAGAGGGGGA-CTGGGTTGATCATCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGC--AGGGGGATC-GGGCCGATCACCGGCTTGCGCA
* * * * * * * *
15775631 TTATGCCTCTTCGATCGGCTCAGCGCCCTCACGCTCATTTCGTGGGTTGACTAATGCATATGAAG
63 TTCTGCCTCTTCGGTCGGCTCAGCGCCCTCACGCTCGTTTCATGGGTTGCCT-AGGCATACGGAG
* *
15775696 TTCATTCCCAGTCTAAGATCAGATCAAACT
127 TTCATTCCCAGTCTAAGACCAGACCAAACT
* * *
15775726 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTC
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGATCGGGCCGATCACCGGCTTGCGCATTC
* * *
15775791 TGCCTCTTCGGTCGGCTTAGCG-CCTGCACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTT
66 TGCCTCTTCGGTCGGCTCAGCGCCCT-CACGCTCGTTTCATGGG-TTGCCTAGGCATACGGAGTT
15775855 CATTCCCAGTCTAAG
129 CATTCCCAGTCTAAG
15775870 TTTTTGAGCC
Statistics
Matches: 237, Mismatches: 57, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 108 0.46
158 11 0.05
159 112 0.47
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGATCGGGCCGATCACCGGCTTGCGCATTC
TGCCTCTTCGGTCGGCTCAGCGCCCTCACGCTCGTTTCATGGGTTGCCTAGGCATACGGAGTTCA
TTCCCAGTCTAAGACCAGACCAAACT
Found at i:15775847 original size:157 final size:157
Alignment explanation
Indices: 15775370--15775869 Score: 479
Period size: 157 Copynumber: 3.2 Consensus size: 157
15775360 CCCAGTCTAA
* * * * * *
15775370 GCATACAGAGTTCATTCCCA-ACGTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
15775434 AGCATGTAGGGGGATCGAGTCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCC
65 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCGCC
* * * * * *
15775499 CGCAGGCCCGTGTCATGGGTTAGCCTAG
130 TGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * ** * *
15775527 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * ** * *
15775590 TAGCACGCAGAGGGGGA-CTGGGTTGATCATCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAG
64 CAGCACGC--AGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAG
* * * * *
15775654 CGCCCT-CACGCTCATTTCGTGGGTTGACTAAT
126 CG-CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * **
15775686 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * *
15775751 GCACGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTTAGCGCCT
66 GCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCGCCT
*
15775816 GCACGCTCGTTTCATGGGATGGCTTAG
131 GCACGCTCGTTTCATGGGTTGGCTTAG
15775843 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15775870 TTTTTGAGCC
Statistics
Matches: 264, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
156 6 0.02
157 135 0.51
158 8 0.03
159 110 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCGCCT
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15777082 original size:26 final size:26
Alignment explanation
Indices: 15777025--15777082 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
15777015 ATGGGTTGGC
*
15777025 TTTAGGCATACGGAGTTCATTCCATG
1 TTTAAGCATACGGAGTTCATTCCATG
*
15777051 TCTAAGCATACGGAGTTCATTCCCA-G
1 TTTAAGCATACGGAGTTCATT-CCATG
15777077 TTTAAG
1 TTTAAG
15777083 ATCGAACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (26 bp):
TTTAAGCATACGGAGTTCATTCCATG
Found at i:15777436 original size:25 final size:26
Alignment explanation
Indices: 15777398--15777447 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
15777388 GTTGACATAG
*
15777398 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
15777424 GCATAC-GAGTTCATTCCAAGTCTA
1 GCATACGGAGTTCATCCCAAGTCTA
15777448 GGATCAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:15778662 original size:26 final size:26
Alignment explanation
Indices: 15778626--15778678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15778616 GTTGACTTAG
15778626 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
15778652 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
15778678 G
1 G
15778679 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:15779010 original size:159 final size:159
Alignment explanation
Indices: 15778652--15779016 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
15778642 CCTAGTCTAA
* * * **
15778652 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAAATCGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAACAGGATCGATA
* * * * * * *
15778717 GCGCGCAGGCGGAGACCGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
66 GCACACAGGCGGAGACAGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGCGC
**
15778782 CCGCACGCCCATTTTGTGGGTTCGCTTAG
131 CCGCACGCCCATTTCATGGGTTCGCTTAG
* * * *
15778811 GCATAGGGAGTTCATTCC-ATGCCT-A-ATCGCCAACTAGACCGAGGGTTGTGGCAACAGGAAT-
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCG--GACCAGACCGAGGGTTGTGGCAACAGG-ATC
* * * * *
15778872 GGTAGCATATAGAG-GGGGACAGGGCCGATCCCC-GACTTGCGCATTATGCCTCTCCGATCGGCT
62 GATAGCACACAG-GCGGAGACAGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGATCGACT
* *** * *
15778935 CAGGGCCCGCACGCTTGTTTCATGGGTTGGCTTTG
125 CAGCGCCCGCACGCCCATTTCATGGGTTCGCTTAG
*
15778970 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTT
15779017 ACAGCAGTAG
Statistics
Matches: 163, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 3 0.02
159 147 0.90
160 5 0.03
161 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAACAGGATCGATA
GCACACAGGCGGAGACAGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGCGC
CCGCACGCCCATTTCATGGGTTCGCTTAG
Found at i:15779163 original size:26 final size:26
Alignment explanation
Indices: 15779126--15779178 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779116 GTAGGCTTAG
15779126 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15779152 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
15779178 G
1 G
15779179 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15779528 original size:26 final size:26
Alignment explanation
Indices: 15779492--15779541 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15779482 TTGACTTAGG
15779492 CATACAGAGTTCATCCCCAGTCTACA
1 CATACAGAGTTCATCCCCAGTCTACA
* *
15779518 CATACGGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATCCCCAGTCTA
15779542 AGATCGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTACA
Found at i:15780408 original size:26 final size:26
Alignment explanation
Indices: 15780379--15780431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15780369 GTTGACTTAG
*
15780379 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15780405 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15780431 G
1 G
15780432 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15780768 original size:159 final size:158
Alignment explanation
Indices: 15780413--15780788 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 158
15780403 AAGCATATGA
* * * *
15780413 AGTTCATTCCCAGTCTAAGATCAGATCGGGATCGAA-GGTTGCGGCAGTAGGATCGACAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGA-CCGGA-CCAAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * * * * * * * * ** *
15780477 TGGGGGGATCGAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCTGGCTGAGTGCCCGCACG
64 AGGGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGAACG
* * *
15780542 CCCATTTTGTAGGTTGGCTGAGGCATAGGG
129 CCCATTTCGTAGGTTGACTGAGGCATACGG
** ** *
15780572 AGTTCATT-CCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGTAGC-GAGATCGACAGCACG
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGCGGTAGCAG-GATCGACAGCACG
* *
15780634 CAGAGGGGGACCGGGCTGATCCACGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGAA
63 CAG-GGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGAA
* * *
15780699 CGCTCATTTCGTTGGTTGACTTAGGCATACGG
127 CGCCCATTTCGTAGGTTGACTGAGGCATACGG
* *
15780731 AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGTAGCAGGATCGACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAG
15780789 TACATAAAAG
Statistics
Matches: 174, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 33 0.19
159 132 0.76
160 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
GGGGGACCGAGCCGATCCACGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGAACGCC
CATTTCGTAGGTTGACTGAGGCATACGG
Found at i:15781442 original size:26 final size:26
Alignment explanation
Indices: 15781394--15781445 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781384 TTGGCTTAGT
**
15781394 CATACGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCGAGTCTAAG
*
15781420 CATACGGAGTTCATTTCGAGTCTAAG
1 CATACGGAGTTCATTCCGAGTCTAAG
15781446 AGTTTGAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCGAGTCTAAG
Found at i:15782665 original size:26 final size:26
Alignment explanation
Indices: 15782613--15782665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15782603 GTTGGCTTAG
*
15782613 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
15782639 GCATACAGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
15782665 G
1 G
15782666 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:15784040 original size:26 final size:26
Alignment explanation
Indices: 15784010--15784117 Score: 146
Period size: 26 Copynumber: 4.2 Consensus size: 26
15784000 TGGGTTGGCT
*
15784010 TAAGCATACAGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
15784036 TAAGCATACGGAGTTCATGCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
15784062 TAAGCATACGGAGTTCATTCCACGTC
1 TAAGCATACGGAGTTCATTCCATGTC
* * *
15784088 CAGGCATATGGAGTTCATTCCCA-GTC
1 TAAGCATACGGAGTTCATT-CCATGTC
15784114 TAAG
1 TAAG
15784118 AGTTTGAGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 69 0.96
27 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:15785322 original size:26 final size:26
Alignment explanation
Indices: 15785286--15785338 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15785276 GTTGGCTTAG
15785286 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATT-CATAGTCTAA
15785312 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
15785338 G
1 G
15785339 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATAGTCTAA
Found at i:15785477 original size:185 final size:184
Alignment explanation
Indices: 15785274--15785682 Score: 482
Period size: 184 Copynumber: 2.2 Consensus size: 184
15785264 CACGTTTTAC
*
15785274 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCATAGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAG
* * *
15785339 ATTGGACCAG-ACCGTGGGTTGCGACAACAGAACC-AGCAACACATAAGGGGGGACCGAGCCAAT
66 A-TCGAACAGTACCGAGGGTTGCGACAACAGAACCGA-CAACACAT-AGGGGGGACCGAGCCAAT
* * * *
15785402 TCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGT
128 CCTCGACTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCCATTTCGT
* * * *
15785459 GGGTTGGCTTAGGCATACGGAGTTCA-TCCTTAGTCTAATCATACGTAGTTCATTCCCAGTCTAA
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCACAGTCTAA
* * * * * * * * *
15785523 GATCGAACTGTACTGAGGGTTGCGATAGCAGTATCGACAGCACGTAGGGGGGACCGAGCCGATCC
65 GATCGAACAGTACCGAGGGTTGCGACAACAGAACCGACAACACATAGGGGGGACCGAGCCAATCC
* * ** * * **
15785588 TCGACTTGGGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCATTTCGT
130 TCGACTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCCATTTCGT
* *
15785643 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGC
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15785683 CCCAGTCGGA
Statistics
Matches: 187, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
184 102 0.55
185 84 0.45
186 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAG
ATCGAACAGTACCGAGGGTTGCGACAACAGAACCGACAACACATAGGGGGGACCGAGCCAATCCT
CGACTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCCATTTCGT
Found at i:15785519 original size:26 final size:26
Alignment explanation
Indices: 15785472--15785522 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15785462 TTGGCTTAGG
*
15785472 CATACGGAGTTCATCCTTAGTCTAAT
1 CATACGGAGTTCATCCTCAGTCTAAT
*
15785498 CATACGTAGTTCATTCC-CAGTCTAA
1 CATACGGAGTTCA-TCCTCAGTCTAA
15785523 GATCGAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATCCTCAGTCTAAT
Found at i:15785928 original size:158 final size:158
Alignment explanation
Indices: 15785507--15785932 Score: 398
Period size: 158 Copynumber: 2.7 Consensus size: 158
15785497 TCATACGTAG
* * * * * * *
15785507 TTCATTCCCAGTCTAAGATC-GAACTGTACTGAGGGTTGCGATAGCAGTATCGACAGCACGTAGG
1 TTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGTGACAGCAGGATCGACAGCATGCAGG
* * * * * * * *
15785571 GGGGACCGAGCCGATCCTCGACTTG-GGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCC
65 GGGGACCGGGTCGATCCCCGACTTGTGG-ATTATGCCTCTCCGATCGGCTCAACGCCCGAACGCC
* *
15785635 CATTTCGTGGGTTGGCTTAGGCATAGGGAG
129 CATTTCGTGGGTTGACTTAGGCATAGGGAC
* ** * * * **
15785665 TTCATT-CCATGTATAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCATGCAG
1 TTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGACAGCATGCAG
* * * * *** *
15785728 AGGGGGACCGGATCGATCCCCGGCTTGCT-CATTATGCC-CTCCGATCGGCTCAATGTGTGAATG
64 -GGGGGACCGGGTCGATCCCCGACTTG-TGGATTATGCCTCTCCGATCGGCTCAACGCCCGAACG
* * *
15785791 CTCATTTCGTGGGTTGACTTAGGGATATGGAC
127 CCCATTTCGTGGGTTGACTTAGGCATAGGGAC
15785823 TTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGACAGCATGCAAGG
1 TTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGACAGCATGC-AGG
* *
15785888 GGGGATCGGGTCGGTCCCCGACTTGTGGATT-TGCCTCTCCGATCG
65 GGGGACCGGGTCGATCCCCGACTTGTGGATTATGCCTCTCCGATCG
15785933 ATTGAGCATG
Statistics
Matches: 208, Mismatches: 49, Indels: 22
0.75 0.18 0.08
Matches are distributed among these distances:
157 11 0.05
158 161 0.77
159 35 0.17
160 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
TTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAGGATCGACAGCATGCAGGG
GGGACCGGGTCGATCCCCGACTTGTGGATTATGCCTCTCCGATCGGCTCAACGCCCGAACGCCCA
TTTCGTGGGTTGACTTAGGCATAGGGAC
Found at i:15786245 original size:26 final size:26
Alignment explanation
Indices: 15786215--15786267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786205 GTTGACTTAG
15786215 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15786241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15786267 G
1 G
15786268 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15786942 original size:26 final size:26
Alignment explanation
Indices: 15786912--15786964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786902 GTTGACTTAG
15786912 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
15786938 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15786964 G
1 G
15786965 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15787405 original size:11 final size:11
Alignment explanation
Indices: 15787375--15787407 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15787365 GCCCGGGCAC
*
15787375 CATCGTCGAAG
1 CATCGTCGGAG
15787386 CATCGTCGGAG
1 CATCGTCGGAG
15787397 CATCGTCGGAG
1 CATCGTCGGAG
15787408 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15788734 original size:26 final size:25
Alignment explanation
Indices: 15788695--15788749 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
15788685 TAGGTTGACT
15788695 TAAGCATCAGAGTTCA-TCCCAAGTC
1 TAAGCATCAGAGTTCATTCCCAA-TC
15788720 TAAGCATACAGAGTTCATTCCCAATC
1 TAAGCAT-CAGAGTTCATTCCCAATC
15788746 TAAG
1 TAAG
15788750 ATTGAATCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 7 0.25
26 15 0.54
27 6 0.21
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
TAAGCATCAGAGTTCATTCCCAATC
Found at i:15789248 original size:26 final size:26
Alignment explanation
Indices: 15789197--15789249 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15789187 GTTGGCTTAG
* **
15789197 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGATCATTCCATACCTAA
*
15789223 GCATATAGAGATCATTCCCTACCTAA
1 GCATATAGAGATCATTCCATACCTAA
15789249 G
1 G
15789250 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATATAGAGATCATTCCATACCTAA
Found at i:15790246 original size:26 final size:26
Alignment explanation
Indices: 15790216--15790268 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15790206 GTTGACATAG
* *
15790216 GCATAAGGAGTTCATCCCCGGTCTAA
1 GCATAAGGAATTCATCCCCAGTCTAA
* *
15790242 GCATATGGAATTCATTCCCAGTCTAA
1 GCATAAGGAATTCATCCCCAGTCTAA
15790268 G
1 G
15790269 ATTGGTCCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAATTCATCCCCAGTCTAA
Found at i:15791368 original size:26 final size:26
Alignment explanation
Indices: 15791331--15791383 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15791321 GTTGGCTTAG
15791331 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15791357 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15791383 G
1 G
15791384 AGTTGGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15792430 original size:26 final size:26
Alignment explanation
Indices: 15792400--15792449 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15792390 GGCTTAGGCA
15792400 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
15792426 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15792450 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15792838 original size:184 final size:184
Alignment explanation
Indices: 15792426--15792839 Score: 512
Period size: 184 Copynumber: 2.2 Consensus size: 184
15792416 TGTCTAAGCG
* * * * * *
15792426 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAA-GGTTGCGGTAGCAAGATTAGCAGC
1 TACGGAGTTCATCCCCAGTCTAAGATCGGATC-GAGCCAAGGGTTGCAGTAGCAAGACTAGCAGC
* * * ** *
15792490 AGGATCGGTAGCATGCTGGGGTGGATCGAGCCGATCCTCAGCTTTCGTATTCTGCCTCTCTAGCT
65 AGGATCGATAGCATGCTGGGGTGGACCGAGCCGATCCCCAGCTTTCACATTCTGCCTCTCGAGCT
15792555 GGCCTCTCCGACCTACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
130 GGCCTCTCCGACCTACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
* * * ** * *
15792610 TACGTAGTTCATCCCCGGTCTAAGATCGGACCG-GACTGAGGGTTGTAGTAGCAGGACTAGCAGC
1 TACGGAGTTCATCCCCAGTCTAAGATCGGATCGAG-CCAAGGGTTGCAGTAGCAAGACTAGCAGC
* *
15792674 AGGATCGATAGCATG-TAGGGGTGGACCGAGCCGATCCCCGGCTTTCACATTCTGCCTCTTCGAT
65 AGGATCGATAGCATGCT-GGGGTGGACCGAGCCGATCCCCAGCTTTCACATTCTGCCTC-TCGAG
* * * * * *
15792738 C-GGCCTCTCCGGCCTGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCA
128 CTGGCCTCTCCGACCTACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
*
15792794 TACGGAGCTCATCCCCAGTCTAAGATCGGATCGAGCCAAGGGTTGC
1 TACGGAGTTCATCCCCAGTCTAAGATCGGATCGAGCCAAGGGTTGC
15792840 GATAATAGGA
Statistics
Matches: 192, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 4 0.02
184 183 0.95
185 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (184 bp):
TACGGAGTTCATCCCCAGTCTAAGATCGGATCGAGCCAAGGGTTGCAGTAGCAAGACTAGCAGCA
GGATCGATAGCATGCTGGGGTGGACCGAGCCGATCCCCAGCTTTCACATTCTGCCTCTCGAGCTG
GCCTCTCCGACCTACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCA
Found at i:15792987 original size:26 final size:26
Alignment explanation
Indices: 15792950--15793002 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15792940 GTTGACTTAG
15792950 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15792976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15793002 G
1 G
15793003 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15794438 original size:26 final size:26
Alignment explanation
Indices: 15794388--15794440 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15794378 GTTGGCTTAG
*
15794388 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15794414 GCATGCGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15794440 G
1 G
15794441 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15795141 original size:26 final size:26
Alignment explanation
Indices: 15795111--15795163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795101 GTTCACTTAG
15795111 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
15795137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15795163 G
1 G
15795164 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15795641 original size:26 final size:26
Alignment explanation
Indices: 15795611--15795663 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795601 GTTGGCATAG
*
15795611 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15795637 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15795663 G
1 G
15795664 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15797204 original size:26 final size:26
Alignment explanation
Indices: 15797168--15797220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15797158 GTTGACTTAG
15797168 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
15797194 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15797220 G
1 G
15797221 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15798415 original size:26 final size:26
Alignment explanation
Indices: 15798377--15798429 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15798367 GTTGGCTTAG
* *
15798377 GCATACGGTGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
15798403 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
15798429 G
1 G
15798430 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15799743 original size:693 final size:688
Alignment explanation
Indices: 15798403--15800700 Score: 2384
Period size: 693 Copynumber: 3.3 Consensus size: 688
15798393 CCATGTCTAA
* * * * * * * *
15798403 GCATACAGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAAGATTGCGGCAGCAGGAACAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
** *
15798468 GTAGGATCGGTAGCACGTAGGGGGGATCGGG-CTGATCCCCAGCTTGTGCATTCTGCCTCTCCGG
66 GTAGGATCGACAGCACGCAGGGGGGATCGGGTC-GATCCCCAGCTTGTGCATTCTGCCTCTCCGG
* *
15798532 TCGACTGAGCGCCTGCACGCTCATTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTTT
130 TCGACTGAGCGCC-GCACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCT
**** * * * *
15798597 AAGTTTAGGCATACGGACCGAGGGTTGTGGCACCAAGACCGGCAGTGGGATCGACAGCACACAGA
194 AACCCCAGCCAT----ACCGAGGGTTGTGG-AGCAAGACC-GTAG-GGGATCGACAGCACGCAGA
* * ** *
15798662 GGGAGACCATGCTAATCCCCGACTTGCGCATTATGCCTCTT-CGA-CAGGCCCTCCGACCGGCTG
252 GGGGGACCGTGCTAATCCCCGACTTATGCATTATGCCT-TTCCGATC-GACCCTCCGACC-GCTG
* * * *
15798725 AGCA-CTGTACGCTCGTTTTATGGGCTGACTTAGGCATACGTAGTTCATCTCCAGTCTAAGCATA
314 AGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATA
* ** ** * * *
15798789 CGGAGTTCATTGCTAGTCTAAGATTGGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAGCACG
379 CAGAGTTCATTGCCCGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGAAGGATCGGTAGCACG
* * * * *
15798854 TAGAGGGGACCGAGCCGATCCTCGACTTGCGTATTTTGCCTC-TCTGATCGGCTGAGTGCCCGCG
444 T--AGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GATCAGCTGAGTGCCCGCA
*
15798918 CGCCCGTTTCGTGGGTTAGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
506 CGCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
* * * * * *
15798983 AAGTTTGTGGCAACGGAATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATT
571 AGGGTTGTGGCAATGGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTGCGCATT
* * * *
15799048 ATGCCTCTTCGACTGGCTCAGCGCTCGCATGCTCATTTCATGGGTTGACTTAG
636 ATGCCTCTCCGACTGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
* * * *
15799101 GCAGACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGCTGTGGCAGCAGGACCAACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
* * ** * * * *
15799166 ATAGGGTCGACAGCACGCAGGAAGGACCGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCGAT
66 GTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGT
* *
15799231 CGACTGAGCACCAACACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCTA
131 CGACTGAGCGCC-GCACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
15799296 ACCCCAGCCATACCAAGGGTTGTGGTAGCAAGACCAGTAGCGGGATCGGCAGCATGCAGAGGGGG
195 ACCCCAGCCATACCGAGGGTTGTGG-AGCAAGACC-GTAG-GGGATCGACAGCACGCAGAGGGGG
* * * *
15799361 ACCGTGCTAATCCCTGGCCTATGCATTACGCCTTTCCGATCGACCCTCCGACCTGCTGAGCACCC
257 ACCGTGCTAATCCCCGACTTATGCATTATGCCTTTCCGATCGACCCTCCGACC-GCTGAGCACCC
*
15799426 GTACACTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATACAGAGTT
321 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATACAGAGTT
* *
15799491 CATTGCCCGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGTAGGATCGGTAGCACGTAGGGGA
386 CATTGCCCGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGAAGGATCGGTAGCACGTAGGGGA
* *
15799556 CCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGATTAGCTGAGCT-CCCGCACGCCCGTTT
451 CCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCAGCTGAG-TGCCCGCACGCCCGTTT
* * **
15799620 CGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAACCCCA-CCAAAACCCAGGGTTGT
515 CGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACTGAGGGTTGT
* * * * *
15799684 GGTAGTGGGATCGACAGCACAG-AGAAGGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTC
579 GGCAATGGGATCGACAGCAC-GCAGAAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTC
* *
15799748 TCCAACTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
643 TCCGACTGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
* * ** *
15799794 GCATACAGAGTTCATT-CCAATCTAAGATCGGATCAAACCGAGGGTTGTGGCAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
* * * * * * * *
15799858 GCAAGATCGACAGCACGCAGGGGGGATTGAGTCGGTCCCTAGCTTGTGCATTCTACCTCTCCGGC
66 GTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGT
* ** * *
15799923 CGACTGAGCGCTCGCACGCTAGTTTCGTGGGTTAGCTTAGGCATATGGAGTTCATTCCACGTCTA
131 CGACTGAGCGC-CGCACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCTA
* ** *
15799988 AGCCCCAACCGCACCGAGGGTTGT-G-GC-AG--C-T---GGATCGACAGCACGTAGAGGGGGAC
195 A-CCCCAGCCATACCGAGGGTTGTGGAGCAAGACCGTAGGGGATCGACAGCACGCAGAGGGGGAC
* * * * ** * * * * * *
15800044 TGGGCTGATCCCCGACTTATGCATTATGCCTCTCAAATGGGTCTCTTCGATCGACTGAGCGCCCG
259 CGTGCTAATCCCCGACTTATGCATTATGCCTTTCCGAT-CGACCCTCCGACCG-CTGAGCACCCG
* * * *
15800109 CACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATA-AGGAGTT
322 TACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATACA-GAGTT
* * * * * * *
15800173 CATT-CCCAGTCTAAGATCGGATCGGATCGGACCAAGGGTTGCGGCAAAAGGTTCGGCAGCATGC
386 CATTGCCC-GTCTAAGATC--A---GACCGAACCAAGGGTTGCGGCAGAAGGATCGGTAGCACGT
* * * * ** *
15800237 AGGAGGGATCGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCACACG
445 A-G-GGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCAGCTGAGTGCCCGCACG
* * *
15800302 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAG
508 CCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAG
* * * * *
15800367 GGTTGTGGCAATGGGACCGACAGCACGCAAAAAGGGATCGGGCCGAT-CCCGGCTTGCGCATTAA
573 GGTTGTGGCAATGGGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTGCGCATTAT
* * * * *
15800431 GCCTCTCCGGCCGGCTCAGTGCCCGAATGCTCGTTTCGTTGGTAT-ACTTAG
638 GCCTCTCCGACTGGCTCAGCGCCCGCATGCTCGTTTCGTGGGT-TGACTTAG
* * *
15800482 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T----GC-GG--TAG-A
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
* * * * * * * * *
15800537 --AGGTTCAATAGCACGCA-GGGGGATCGAGCCGATCCTCGGCTTGTGTATTCTGCCTCTCCCG-
66 GTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGT
* * * ** *
15800598 CCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
131 CGA-CTGAGCG-CCGCACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCT
*
15800663 AAGCCCCAGCCGA-ACCGAGGGTTGTGGTAGCAGGACCG
194 AA-CCCCAGCC-ATACCGAGGGTTGTGG-AGCAAGACCG
15800701 GCAGCACGCA
Statistics
Matches: 1338, Mismatches: 226, Indels: 87
0.81 0.14 0.05
Matches are distributed among these distances:
675 2 0.00
676 110 0.08
677 15 0.01
679 3 0.00
680 3 0.00
681 55 0.04
682 92 0.07
683 2 0.00
684 1 0.00
685 1 0.00
687 34 0.03
688 74 0.06
689 170 0.13
690 4 0.00
692 150 0.11
693 241 0.18
694 96 0.07
695 113 0.08
698 171 0.13
699 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (688 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
GTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGT
CGACTGAGCGCCGCACGCTCGTTTCGTGGGTTTTCTTAGGCATACGGAGTTCATTCCATGTCTAA
CCCCAGCCATACCGAGGGTTGTGGAGCAAGACCGTAGGGGATCGACAGCACGCAGAGGGGGACCG
TGCTAATCCCCGACTTATGCATTATGCCTTTCCGATCGACCCTCCGACCGCTGAGCACCCGTACG
CTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTG
CCCGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGAAGGATCGGTAGCACGTAGGGGACCGAG
CCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATCAGCTGAGTGCCCGCACGCCCGTTTCGTGGG
TTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAATG
GGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTG
GCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
Found at i:15800165 original size:26 final size:26
Alignment explanation
Indices: 15800135--15800187 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15800125 GTTGACTTAG
*
15800135 GCATACGAAGTTCATCCCCAATCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
* * *
15800161 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
15800187 G
1 G
15800188 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAATCTAA
Found at i:15800466 original size:158 final size:156
Alignment explanation
Indices: 15800240--15800825 Score: 556
Period size: 159 Copynumber: 3.7 Consensus size: 156
15800230 AGCATGCAGG
* * * *
15800240 AGGGATCGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCC-ACACGCC
1 AGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGA-ACGCC
* * **
15800304 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGG
65 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACCGAGGG
* *
15800369 TTGTGGCAATGGGACCGACAGCACGCAAAA
129 TTGTGGTAA-AGGACCGACAGCACGC-AAA
* * * * *
15800399 AGGGATCGGGCCGATCC-CGGCTTGCGCATTAAGCCTCTCCGGCCGGCTCAGTGCCCGAATGCTC
1 AGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACGCCC
* * **
15800463 GTTTCGTTGGTAT-ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAG
66 GTTTCATGGGT-TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-GACCGAG
* ** * * *
15800525 GGTTGCGGTAGAAGGTTCAATAGCACGC-AG
127 GGTTGTGGTA-AAGGACCGACAGCACGCAAA
* * * * * * * *
15800555 GGGGATCGAGCCGATCCTCGGCTTGTGTATTCTGCCTCTCCCGCCAGCTGAGCGCCCGCACGCCC
1 AGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACGCCC
* *
15800620 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
66 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG-ACCGAGGGT
* *
15800685 TGTGGTAGCAGGACCGGCAGCACGCAGAA
130 TGTGGTA-AAGGACCGACAGCACGCA-AA
* * * * ** * * * *
15800714 GGGGACCGGGCCGATCC-CTAGCTTGCGCATTATGCGTCTCCGATCGGTTCAGCGCCCAAACGCT
1 AGGGATCGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACGCC
* * *
15800778 CATTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCATGTCTAAGC
65 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15800826 ATATGGAGTT
Statistics
Matches: 342, Mismatches: 72, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
156 21 0.06
157 104 0.30
158 105 0.31
159 112 0.33
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
AGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACGCCC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCGAGGGTT
GTGGTAAAGGACCGACAGCACGCAAA
Found at i:15800649 original size:157 final size:157
Alignment explanation
Indices: 15800200--15800826 Score: 564
Period size: 158 Copynumber: 4.0 Consensus size: 157
15800190 CGGATCGGAT
* * * * *
15800200 CGGACCAAGGGTTGCGGCAAAAGGTTCGGCAGCATGCAGGAGGGATCGGGCCAATCCTCGGCTTG
1 CGGACCGAGGGTTGCGGCAGAAGGTTCGACAGCACGCAGG-GGGATCGGGCCGATCCTCGGCTTG
*
15800265 CGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
65 CGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
*
15800330 GGAGTTCATTCCATGTCTAAGCCCCAGC
130 GGAGTTCATTCCATGTCTAAGCACCAGC
* ** * * ** **
15800358 CAGATTGAGGGTTGTGGCA-ATGGGACCGACAGCACGCAAAAAGGGATCGGGCCGATCC-CGGCT
1 CGGACCGAGGGTTGCGGCAGA-AGGTTCGACAGCACGC--AGGGGGATCGGGCCGATCCTCGGCT
** * * * * * * * *
15800421 TGCGCATTAAGCCTCTCCGGCCGGCTCAGTGCCCGAATGCTCGTTTCGTTGGTAT-ACTTAGGCA
63 TGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGT-TGGCTTAGGCA
* *
15800485 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
127 TAGGGAGTTCATT-CCATGTCTAAGCACCAG-C
* * * * *
15800516 CGGACCGAGGGTTGCGGTAGAAGGTTCAATAGCACGCAGGGGGATCGAGCCGATCCTCGGCTTGT
1 CGGACCGAGGGTTGCGGCAGAAGGTTCGACAGCACGCAGGGGGATCGGGCCGATCCTCGGCTTGC
* * *
15800581 GTATTCTGCCTCTCCCGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
*
15800646 GAGTTCATTCCATGTCTAAGCCCCAGC
131 GAGTTCATTCCATGTCTAAGCACCAGC
* * * * ** * * *
15800673 CGAACCGAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAAGGGGACCGGGCCGATCC-CTAGCT
1 CGGACCGAGGGTTGCGGCAGAAGGTTCGACAGCACGCAG--GGGGATCGGGCCGATCCTC-GGCT
* * ** * * * * ** * * * *
15800737 TGCGCATTATGCGTCTCCGATCGGTTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCAT
63 TGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
* *
15800802 ACGGAGTTGATTCCATGTCTAAGCA
128 AGGGAGTTCATTCCATGTCTAAGCA
15800827 TATGGAGTTC
Statistics
Matches: 368, Mismatches: 87, Indels: 27
0.76 0.18 0.06
Matches are distributed among these distances:
156 20 0.05
157 108 0.29
158 130 0.35
159 109 0.30
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
CGGACCGAGGGTTGCGGCAGAAGGTTCGACAGCACGCAGGGGGATCGGGCCGATCCTCGGCTTGC
GCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCACCAGC
Found at i:15800834 original size:26 final size:26
Alignment explanation
Indices: 15800798--15800876 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15800788 GTTGACTTAG
*
15800798 GCATACGGAGTTGATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15800824 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15800850 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15800876 G
1 G
15800877 ATTAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15801039 original size:26 final size:26
Alignment explanation
Indices: 15801009--15801061 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15800999 GTTGGCTTTG
15801009 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
15801035 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15801061 G
1 G
15801062 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15803320 original size:26 final size:26
Alignment explanation
Indices: 15803283--15803335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803273 GTTGGCTTAG
15803283 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15803309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15803335 G
1 G
15803336 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15803621 original size:26 final size:26
Alignment explanation
Indices: 15803592--15803644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803582 GTTGGCTTAG
15803592 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15803618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15803644 G
1 G
15803645 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15804011 original size:26 final size:26
Alignment explanation
Indices: 15803960--15804012 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803950 GTTGACTTAG
* *
15803960 GCATACGGAGTTCATCTTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGCCTAA
*
15803986 GCATGCGGAGTTCATTCCT-AGCCTAA
1 GCATACGGAGTTCA-TCCTCAGCCTAA
15804012 G
1 G
15804013 ATCTGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGCCTAA
Found at i:15804869 original size:26 final size:26
Alignment explanation
Indices: 15804839--15804891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15804829 GTTGACTTAG
15804839 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15804865 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15804891 G
1 G
15804892 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15805371 original size:26 final size:26
Alignment explanation
Indices: 15805341--15805393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805331 GTTGGCTTAG
*
15805341 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
15805367 GCATATGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
15805393 G
1 G
15805394 ATCGGGCCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:15805551 original size:184 final size:184
Alignment explanation
Indices: 15805266--15805737 Score: 529
Period size: 185 Copynumber: 2.6 Consensus size: 184
15805256 AGGGGATCGG
* * * ** * *
15805266 GCCTGTCCCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGCACACTCCTTTCATGG
1 GCCTATCCCCGGCTTACACATTCTGCCTCTCCG-TCGGCTGAGTGCCCGCACGCTCATTTCATGG
* **
15805331 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCTGTCTAAGAT
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAT
** * * * **
15805396 C-GGGCCGAA-CTAAGGGTTGCGGCAGCAGGATCAACAGCACGTAAGAGGGGACCGA
130 CAGAACCGAATC-AAGGGTTGCGACAGCAAGATCAACAACACACAAGA-GGGACCGA
* * *
15805451 G-CTGATCCTCGGCTTACACATTCTGCCTCTCCGTTGGCTGAGTGCCCGCACGCTCATTTCGTGG
1 GCCT-ATCCCCGGCTTACACATTCTGCCTCTCCGTCGGCTGAGTGCCCGCACGCTCATTTCATGG
* * * *
15805515 GTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
65 GTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGA
* * * *
15805579 TCAGAACTGGATCGAGGGTTGCGACAGCAAGATCGACAACACACAAGAGGGACCGA
129 TCAGAACCGAATCAAGGGTTGCGACAGCAAGATCAACAACACACAAGAGGGACCGA
* * * * * * * *
15805635 GCCTATCCCCAGCTTTCGCATTCTGCCTCTTCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGG
1 GCCTATCCCCGGCTTACACATTCTGCCTC-TCCGTCGGCTGAGTGCCCGCACGCTCATTTCATGG
*
15805700 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15805738 CCTAGCCGAA
Statistics
Matches: 237, Mismatches: 43, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
184 114 0.48
185 122 0.51
186 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.24
Consensus pattern (184 bp):
GCCTATCCCCGGCTTACACATTCTGCCTCTCCGTCGGCTGAGTGCCCGCACGCTCATTTCATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC
AGAACCGAATCAAGGGTTGCGACAGCAAGATCAACAACACACAAGAGGGACCGA
Found at i:15805561 original size:26 final size:26
Alignment explanation
Indices: 15805525--15805577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805515 GTTGACTTAG
*
15805525 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15805551 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15805577 G
1 G
15805578 ATCAGAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15805899 original size:26 final size:26
Alignment explanation
Indices: 15805869--15805921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805859 GTTGACTTAG
15805869 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15805895 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15805921 G
1 G
15805922 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15806022 original size:343 final size:343
Alignment explanation
Indices: 15805461--15806082 Score: 919
Period size: 343 Copynumber: 1.8 Consensus size: 343
15805451 GCTGATCCTC
* * *
15805461 GGCTTACACATTCTGCCTCTCCGTTGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
1 GGCTTACACATTCTGCCTCTCCGTCGGCTGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGG
* **
15805526 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAACTGGAT
66 CATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAACCAGAT
*
15805591 CGAGGGTTGCGACAGCAAGATCGACAACACACAAGAGGGACCGAGCCTATCCCCAGCTTTCGCAT
131 CGAGGGTTGCGACAGCAAGATCGACAACACACAAGAGGGACCGAGCCGATCCCCAGCTTTCGCAT
*
15805656 TCTGCCTCTTCGGCCAGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
196 TCTGCCTCTTCGGCCAGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
**
15805721 TCATTCCATGTCTAAGCCCTAGCCGAACCGAAGGTTGTGGTAGCAAGACTAGCAGTACGTAGAGG
261 TCATTAAATGTCTAAGCCCTAGCCGAACCGAAGGTTGTGGTAGCAAGACTAGCAGTACGTAGAGG
15805786 GGGACCAGGTCAGTCCCT
326 GGGACCAGGTCAGTCCCT
* *
15805804 GGCTTAC-CGATTCTGCCTCTCCGATCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTA
1 GGCTTACAC-ATTCTGCCTCTCCG-TCGGCTGAGTGCCCACACGCTCATTTCATGGGTTGACTTA
*
15805868 GGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAG
64 GGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAACCAG
* * * * * * * **
15805932 ATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGAGGGACCGGGCCGATCCCTGGCTTGT-G
129 ATCGAGGGTTGCGACAGCAAGATCGACAACACACAAGAGGGACCGAGCCGATCCCCAGCTT-TCG
* * * * **
15805996 CATTTTGCCTTTTCGGTC-GACTGAGTGCCTGCACACTTGTTTCATGGGTTGGCTTAGGCATAGG
193 CATTCTGCCTCTTCGGCCAG-CTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGG
*
15806060 GAGTTCATTAAATGTCTACGCCC
257 GAGTTCATTAAATGTCTAAGCCC
15806083 CAGTTTGATC
Statistics
Matches: 246, Mismatches: 29, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
342 2 0.01
343 151 0.61
344 93 0.38
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (343 bp):
GGCTTACACATTCTGCCTCTCCGTCGGCTGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGG
CATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAACCAGAT
CGAGGGTTGCGACAGCAAGATCGACAACACACAAGAGGGACCGAGCCGATCCCCAGCTTTCGCAT
TCTGCCTCTTCGGCCAGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
TCATTAAATGTCTAAGCCCTAGCCGAACCGAAGGTTGTGGTAGCAAGACTAGCAGTACGTAGAGG
GGGACCAGGTCAGTCCCT
Found at i:15806168 original size:343 final size:342
Alignment explanation
Indices: 15805430--15806170 Score: 870
Period size: 343 Copynumber: 2.2 Consensus size: 342
15805420 GCAGGATCAA
* *
15805430 CAGCACGTAAGAGG-GGACCGAGCTGAT-CCTCGGCTTACACATTCTGCCTCTCCG-TTGGCTGA
1 CAGCACG-CAGAGGAGGACC-AGCTGATCCCT-GGCTTAC-CATTCTGCCTCTCCGATCGGCTGA
* *
15805492 GTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
62 GTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
* **
15805557 GGAGTTCATTCCCAATCTAAGATCAGAACTGGATCGAGGGTTGCGACAGCAAGATCGACAACACA
127 AGAGTTCATTCCCAATCTAAGATCAGAACCAGATCGAGGGTTGCGACAGCAAGATCGACAACACA
*
15805622 CAAGAGGGACCGAGCCTATCCCCAGCTTTCGCATTCTGCCTCTTCGGCCAGCTGAGTGCCCGCAC
192 CAAGAGGGACCGAGCCGATCCCCAGCTTTCGCATTCTGCCTCTTCGGCCAGCTGAGTGCCCGCAC
* ** *
15805687 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGA
257 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCCAGCCGAACCGA
* *
15805752 AGGTTGTGGTAGCAAGACTAG
322 AGGTTGTGGCAGCAAGACGAG
* * * * * *
15805773 CAGTACGTAGAGGGGGACCAGGTCAGTCCCTGGCTTACCGATTCTGCCTCTCCGATCGGTTGAGT
1 CAGCACGCAGAGGAGGACCAGCTGA-TCCCTGGCTTACC-ATTCTGCCTCTCCGATCGGCTGAGT
*
15805838 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
64 GCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
* * * * * *
15805903 AGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCA
129 AGTTCATTCCCAATCTAAGATCAGAACCAGATCGAGGGTTGCGACAGCAAGATCGACAACACACA
* * ** * * * *
15805967 GGAGGGACCGGGCCGATCCCTGGCTTGT-GCATTTTGCCTTTTCGGTC-GACTGAGTGCCTGCAC
194 AGAGGGACCGAGCCGATCCCCAGCTT-TCGCATTCTGCCTCTTCGGCCAG-CTGAGTGCCCGCAC
** * ** *
15806030 ACTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTACGCCCCAGTTTG-ATCG
257 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCCAG-CCGAACCG
* **
15806094 AGGGTTGTGGCAGCGGGACCGA-
321 AAGGTTGTGGCAGCAAGA-CGAG
* * * *
15806116 CAGCATGCAGAGAGAGG-CCTAGCTGATCCCTGACTTACGCATTATACCTCTCCGA
1 CAGCACGCAGAG-GAGGACC-AGCTGATCCCTGGCTTAC-CATTCTGCCTCTCCGA
15806171 CGACTTACGC
Statistics
Matches: 335, Mismatches: 51, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
342 11 0.03
343 217 0.65
344 107 0.32
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (342 bp):
CAGCACGCAGAGGAGGACCAGCTGATCCCTGGCTTACCATTCTGCCTCTCCGATCGGCTGAGTGC
CCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAATCTAAGATCAGAACCAGATCGAGGGTTGCGACAGCAAGATCGACAACACACAAG
AGGGACCGAGCCGATCCCCAGCTTTCGCATTCTGCCTCTTCGGCCAGCTGAGTGCCCGCACACCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCCAGCCGAACCGAAGGT
TGTGGCAGCAAGACGAG
Found at i:15806733 original size:158 final size:156
Alignment explanation
Indices: 15806221--15806747 Score: 443
Period size: 158 Copynumber: 3.3 Consensus size: 156
15806211 AACGGGCCGA
*
15806221 ATGCTTGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAGATCAAACAGGA
1 ATGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATT-CCATGTCTAAGATCAAAC-GGA
* * * * * *** * *
15806284 CCAAGGATTGTGGCAGCAAGGTCGAAAGAACACAGGGGGGATCAAACCGTTCCCTGGCTTGCGCA
63 CCAAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGATCAGGTCGATCCC-GGCTTGCACA
* * * * *
15806349 TTCTACCTCTCCGGCTGGGTGAGCACCTGT
127 TTCTACCTCTCCAGCAGGCTGAGCGCCTGC
* * * * ** **
15806379 ATGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGCCGGACC
1 ATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG-ATCAAACGGACC
** * * *
15806444 AAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTGCACAT
65 AAGGGTTGTGGCAGCAAGATCGACAGCACGCAG-GGGGGATCAGGTCGATCC-CGGCTTGCACAT
* * * * * *
15806509 TATGCCTCTTCAG-AGTTCATTA-CGCCCGC
128 TCTACCTCTCCAGCAG-GC-TGAGCGCCTGC
* * * * * ** *
15806538 ATGCTCATTTCGTGGGTTGACTTATGCAAACGGAGTTCATTCCCA-GTCTAAGATTTGATCGGAC
1 ATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGA-TCAAACGGAC
* ** * * *
15806602 CGAGGGTTACGGCAGTAAGATCTACAGCACGCAGGGGGGATCAGGTCGATCCCAGACTTGCACAT
64 CAAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGATCAGGTCGATCCC-GGCTTGCACAT
*
15806667 TCTACCTCTCCAGCCGGCTGAGCGCCTGC
128 TCTACCTCTCCAGCAGGCTGAGCGCCTGC
* *
15806696 ATGCTCGTTTCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAG
1 ATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
15806748 CATACGGAGT
Statistics
Matches: 285, Mismatches: 71, Indels: 26
0.75 0.19 0.07
Matches are distributed among these distances:
157 9 0.03
158 157 0.55
159 113 0.40
160 6 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (156 bp):
ATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAAACGGACCA
AGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGATCAGGTCGATCCCGGCTTGCACATTCT
ACCTCTCCAGCAGGCTGAGCGCCTGC
Found at i:15806859 original size:11 final size:11
Alignment explanation
Indices: 15806843--15806875 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15806833 CCCAGGGCAC
15806843 CATCGCCGAAG
1 CATCGCCGAAG
15806854 CATCGCC-AGAG
1 CATCGCCGA-AG
15806865 CATCGCCGAAG
1 CATCGCCGAAG
15806876 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCGCCGAAG
Found at i:15807039 original size:26 final size:26
Alignment explanation
Indices: 15806992--15807041 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15806982 AGCGTAGGCA
* *
15806992 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAATCTAAGCG
* *
15807018 TACGAAGTTCATTCCTAATCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
15807042 GTCGGACCGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCG
Found at i:15807953 original size:26 final size:26
Alignment explanation
Indices: 15807923--15807975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15807913 GTTGACTTAG
15807923 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15807949 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15807975 G
1 G
15807976 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15808357 original size:158 final size:157
Alignment explanation
Indices: 15807949--15808449 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
15807939 CCCAGTCTAA
* * *
15807949 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGGGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
15808013 AGCACGCTGGGGGGACAG-AGCCGATCCTCGACTTGCACATTCTGCGTCTCCGACCGATTGAGCA
65 AGCACGCAGGGGGGACAGTA-CCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCG-CTGAGCA
*
15808077 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
15808107 GCATAGGGAGTTCATTCCATGTCTAAGCACCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
15808171 AGCATGCAAAGTGGGATCGGT--CGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCG-G
65 AGCACGC-AGGGGGGA-CAGTACCGATCCTCGACTTGCGCATTATGCCTCTCCGGCC-GCT-GAG
** *
15808233 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15808265 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** * * * * *
15808329 AGCACGCAGGGGGGACCGTACCGGTCCTCGATTTATGCATTTTACCTTTACGGTCGGCTGAGCAC
65 AGCACGCAGGGGGGACAGTACCGATCCTCGACTTGCGCATTATGCCTCTCCGG-CCGCTGAGCAC
* *
15808394 CCGCATGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15808423 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15808450 CATACGGAGT
Statistics
Matches: 275, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 16 0.06
158 239 0.87
159 15 0.05
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACAGTACCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15808453 original size:26 final size:26
Alignment explanation
Indices: 15808423--15808474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15808413 GTTGGCTTAG
15808423 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15808449 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15808475 CATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15808826 original size:26 final size:26
Alignment explanation
Indices: 15808790--15808868 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15808780 GTTGACTTAG
* * *
15808790 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15808816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15808842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15808868 G
1 G
15808869 ATCGGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15809148 original size:159 final size:160
Alignment explanation
Indices: 15808842--15809344 Score: 421
Period size: 159 Copynumber: 3.2 Consensus size: 160
15808832 CCCAGTCTAA
** ** * * * * *
15808842 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTG-CGACAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGCCG-CAGCAGGAACGA
* * * * * * * * * *
15808905 TAGCACGCAGAG-G-GATCGAGCCGATCCCCGGCTTGCGAATTCTGCCTCTCCGGCCGGCTGAGC
64 CAGCACGTAGAGCGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAAC
* ** *
15808968 GCCCGTATGCCCA-TTTCGTGGGTTGGCTTAG
129 GCCCGCACACTCAGTTTCGTGGGTTGGCTTAG
* * * * ** *
15808999 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGTGTTGTGGCAGC-GGAACTAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCCGCAGCAGGAACGA-C
* * * * *
15809063 AGCACGTCGAGCGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACCTATTCAATG
65 AGCACGTAGAGCGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACG
*
15809128 CCCGCACACTC-GTTTCGTGGGTTGACTTAG
130 CCCGCACACTCAGTTTCGTGGGTTGGCTTAG
** ** *
15809158 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCCGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGCCGCAGCAGGAACGAC
* * * * * * * * * *
15809222 AGCACGTAGGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
65 AGCACGTAGAGCGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACG
* * *
15809287 CCCGCACGCTCATTTTC-TGGGTTGGCTGAG
130 CCCGCACACTCAGTTTCGTGGGTTGGCTTAG
15809317 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15809345 ATACGAAGTT
Statistics
Matches: 273, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 7 0.03
157 50 0.18
158 5 0.02
159 199 0.73
160 12 0.04
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCCGCAGCAGGAACGACA
GCACGTAGAGCGAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAACGC
CCGCACACTCAGTTTCGTGGGTTGGCTTAG
Found at i:15809354 original size:26 final size:26
Alignment explanation
Indices: 15809317--15809369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15809307 GTTGGCTGAG
*
15809317 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15809343 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15809369 G
1 G
15809370 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15809704 original size:894 final size:882
Alignment explanation
Indices: 15807923--15810239 Score: 2490
Period size: 894 Copynumber: 2.6 Consensus size: 882
15807913 GTTGACTTAG
* * *
15807923 GCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * * * *
15807987 TCGAGGGTTGGGGCAGCAGGATCGACAGCACGCTGGGGGGA-CAGAGCCGATCCTCGACTTGC-A
65 T-GAGGGTTGCGACAGCAGGATCGGCAGCACGC-AGAGGGATC-GAGCCGATCCTCGGCTTGCGA
* ** * * *
15808050 CATTCTGCGTCTCCGACCGATTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
127 -ATTCTGCCTCTCCGACCGGCTGAGCGCCCGTAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
* * * * * *
15808115 AGTTCATTCCATGTCTAAGCACCAGTCGGACTGAGGGTTGTGGCAGCGGGAC-CGATAGCATG-C
191 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGAACTAG-CAGCACGTC
* * * * * **
15808178 AAAGTGGGATC-GGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCGGTGCCCGCAC
255 -GAGCGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCA-CTCAATGCCCGCAC
15808242 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
318 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * * * ** * *
15808307 AGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGTA-CCGGTCCTCGATTTATGCATTT
383 GGGTTGCCGCAGCAGGATCGACAGCACGTAGGGGGGATCG-AGCCGATCCTCGGCTTGTGCATTC
* * * * *
15808371 TACCTTTACGGTCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
447 TACCTCTCCGG-CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * **
15808436 ATTCCATGTCTAAGCATACGGAGTTCGTTCCCAGTCTAACATCAGACCGGACCGAGGGTTACGGT
511 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAC
** * * *
15808501 AGTAGGACCAGCAGTAGAATCAGCAACAGGTAAGGGGGATCGAGCTGATCCCCGACTTGCGTATT
576 AGTAGGACCAGCAACAGAATCAGCAACACGCAAGGGGGATCGAGCTGATCCCCGACTTGCGCATT
* *
15808566 CTGCCTCTCCGACCGGATGAGGGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
641 CTGCCTCTCCGACCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
* * * *
15808631 CATTCCATGTCTAAGCCCCATCCGGACCAAGGGTTGTGGTAGTAGGACTGGCAGCGGGATCGACA
706 CATTCCATGTCTAA----CA--C-GA-CAAGGGTTATGGCAGCAGGACTGACAGCGGGATCGACA
* * * * *
15808696 GCATGTAGAGGGGGACCGGACTGATCACTAGCTTGCGCATTATGCATCTTGGGCCGACTGAGTGC
763 GCACGCAGAGGAGGACCGGACTGATCACTAGCTTCCACATTATGCATCTTGGGCCGACTGAGTGC
* * *
15808761 CCACACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTTATCCCCAGTCTAA
828 CCACACGCTCATTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
15808816 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* *
15808881 TGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGATCGAGCCGATCCCCGGCTTGCGAATT
65 TGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGATCGAGCCGATCCTCGGCTTGCGAATT
* * *
15808946 CTGCCTCTCCGGCCGGCTGAGCGCCCGTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
130 CTGCCTCTCCGACCGGCTGAGCGCCCGTAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
* *
15809011 CATTCCATGTCTAAGCCCCAATCGGACCGAGTGTTGTGGCAGCGGAACTAGCAGCACGTCGAGCG
195 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGAACTAGCAGCACGTCGAGCG
* * * * *
15809076 AGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGACCTATTCAATGCCCGCACACTCGT
260 GGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCC-ACTCAATGCCCGCACGCTCGT
15809141 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
324 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
15809206 CCGCAGCAGGATCGACAGCACGTAGGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTC
389 CCGCAGCAGGATCGACAGCACGTA-GGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTACCTC
* *
15809271 TCCGGCCGACTGAGCGCCCGCACGCTCATTTTC-TGGGTTGGCTGAGGCATACGGAGTTCATTCC
453 TCCGG-CGACTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * *
15809335 ATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAG
516 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAG
* * ** * *
15809400 GACCAGCAACAGCATCGGCCGCACGCAAGGGGGATCG-GGTCGATCCCCGGCTTGCGCATTCTGC
581 GACCAGCAACAGAATCAGCAACACGCAAGGGGGATCGAGCT-GATCCCCGACTTGCGCATTCTGC
* * * * * *
15809464 CTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTT
645 CTCTCCGACCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT
* ** *
15809529 CCATGTCT-A-A-G-C-AGGGTTATGGCAGCAGGA-TCGATAGCGGGATCGGTAGCACGCATAGG
710 CCATGTCTAACACGACAAGGGTTATGGCAGCAGGACT-GACAGCGGGATCGACAGCACGCAGAGG
** * * * * *
15809588 AGGATTGGGCTGATC-CTTGGCTTCCATATTATGCCTTTTTGGTTGGCCTCTCCGGTCAGCTGAG
774 AGGACCGGACTGATCAC-TAGCTTCCACATTATG-CATCTT-G--GG-----CC-G--A-CTGAG
** * ** * **
15809652 TGCCTGCATGCTTGTTTCGTGGGTTGGCTTAGGCAAATGGAGTTCATCCCCAGTCTAA
825 TGCCCACACGCTCATTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
* *
15809710 GCATATGGAGTTCATTCCTAGTCTAAG-AT----G----------G----A-ATCGGAT----C-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT
* * * * * * *
15809750 GAGGGTTGTGACTGCAGGATCGGCAGCACGCAGGTGGGATTGGGCCGATCCTCAGCTTGCGCATT
66 GAGGGTTGCGACAGCAGGATCGGCAGCACGCA-GAGGGATCGAGCCGATCCTCGGCTTGCGAATT
* ** *
15809815 TTGCCTCTTTGACCGGCTGAGCGCCCGTAAGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
130 CTGCCTCTCCGACCGGCTGAGCGCCCGTAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
* * * * * * * *
15809880 CATTCCATGTCTAAGCCCCAGTCGGATCAAGGGTTATGGTAG-TGAGACTGGCAGCACGTAGAGG
195 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGA-ACTAGCAGCACGTCGAGC
* * ** * * * * * *
15809944 GGGACTGGGCCAATCCTCATCTTGCGCATTATACCTCTT-CGGCCGGCTCAACGCCCACATGCTT
259 GGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCT-TTCCGGCC-ACTCAATGCCCGCACGCTC
* * * *
15810008 GTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAGGATCGGAGCAGACCGAGGGT
322 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
*
15810073 TG-CGACAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTACC
387 TGCCG-CAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTACC
* * * *
15810137 TCTCCAGCTAGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTCATTC
451 TCTCCGGCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
15810202 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
515 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
15810240 TTTGAGCCAC
Statistics
Matches: 1213, Mismatches: 179, Indels: 89
0.82 0.12 0.06
Matches are distributed among these distances:
867 6 0.00
868 155 0.13
869 265 0.22
870 2 0.00
873 7 0.01
874 1 0.00
878 1 0.00
880 2 0.00
881 58 0.05
882 5 0.00
883 1 0.00
884 1 0.00
885 2 0.00
888 2 0.00
890 2 0.00
891 1 0.00
892 136 0.11
893 231 0.19
894 331 0.27
895 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT
GAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGATCGAGCCGATCCTCGGCTTGCGAATTC
TGCCTCTCCGACCGGCTGAGCGCCCGTAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGAACTAGCAGCACGTCGAGCGG
GACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCACTCAATGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCC
GCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTACCTCTCC
GGCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGACCA
GCAACAGAATCAGCAACACGCAAGGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCC
GACCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAACACGACAAGGGTTATGGCAGCAGGACTGACAGCGGGATCGACAGCACGCAGAGGAGGACCG
GACTGATCACTAGCTTCCACATTATGCATCTTGGGCCGACTGAGTGCCCACACGCTCATTTCGTG
GGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
Found at i:15810221 original size:26 final size:26
Alignment explanation
Indices: 15810185--15810237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15810175 GTTGGCTTAG
*
15810185 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15810211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15810237 G
1 G
15810238 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15817238 original size:26 final size:26
Alignment explanation
Indices: 15817202--15817254 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15817192 GTTGGCTTAG
*
15817202 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACAGAGTCCATTCCCA-GTCTAA
*
15817228 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
15817254 G
1 G
15817255 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:15817369 original size:184 final size:184
Alignment explanation
Indices: 15817044--15817413 Score: 478
Period size: 184 Copynumber: 2.0 Consensus size: 184
15817034 GTTAACTTAG
* *
15817044 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
15817109 GCATGCAAGGGGGACTGGACCGATCCCTGGGTTGTGCATTCTGCCTCTTCGGCCGGCTAAGCGCC
66 GCATGCAAGGGGGACAGGACCGATCCCTAGCTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCC
15817174 CGCACGCTCATT-TCGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAA
131 CGCACGCTCATTGT-GTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAA
* * * * *
15817228 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATTGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * *
15817292 AGCATGCAGGGGGGACCAGG-TCGAT-CCTCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGT
65 AGCATGCAAGGGGGA-CAGGACCGATCCCT-AGCTTGCGCATTCTACCTCTCCGACCGGCTAAGC
* * *
15817355 TCCCGCATGCTCATTGTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCATTGTGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAA
15817412 GC
1 GC
15817414 CCAGTCAGAC
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 4 0.03
184 152 0.95
185 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCATGCAAGGGGGACAGGACCGATCCCTAGCTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCC
CGCACGCTCATTGTGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAA
Found at i:15818337 original size:26 final size:26
Alignment explanation
Indices: 15818259--15818337 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
15818249 GTTGACTTAG
* * *
15818259 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15818285 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15818311 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15818337 G
1 G
15818338 ATTGGATCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15819166 original size:26 final size:26
Alignment explanation
Indices: 15819130--15819180 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15819120 GTTGACTTAG
15819130 GCATACGGAGTTCATCCCCAGTCTAC
1 GCATACGGAGTTCATCCCCAGTCTAC
*
15819156 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
15819181 TGATCGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAC
Found at i:15819655 original size:26 final size:26
Alignment explanation
Indices: 15819619--15819671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15819609 GTTGGGTTAG
15819619 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15819645 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15819671 G
1 G
15819672 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15820180 original size:26 final size:26
Alignment explanation
Indices: 15820150--15820202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15820140 GTTGACTTAG
*
15820150 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15820176 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15820202 G
1 G
15820203 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15820524 original size:26 final size:26
Alignment explanation
Indices: 15820495--15820545 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15820485 TGGCTTAGGC
15820495 ATACGAAATTCATT-CCATGTCTAAGG
1 ATACGAAATTCATTCCCA-GTCTAAGG
* *
15820521 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAATTCATTCCCAGTCTAAG
15820546 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAATTCATTCCCAGTCTAAGG
Found at i:15821245 original size:26 final size:26
Alignment explanation
Indices: 15821207--15821262 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15821197 TGGGTTGACT
*
15821207 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
15821233 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
15821259 TAAG
1 TAAG
15821263 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:15822323 original size:25 final size:26
Alignment explanation
Indices: 15822287--15822335 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15822277 GATGACTTAG
*
15822287 GCATACGGAGTTCA-TCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
*
15822312 GCATACGAAGTTCATTTCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
15822336 AAGATCAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:15822602 original size:159 final size:159
Alignment explanation
Indices: 15822312--15822813 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 159
15822302 CCCAGTCTCA
* * * * * *
15822312 GCATACGAAGTTCATTTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAAGACCGA
* * * * * * * * *
15822375 CAGCACGCAGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGGG
65 CAACACGCAAGGGGCACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGGCCGACTAAGTG
* *
15822440 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15822470 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAAGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAAGACCGAC
* * * * * *
15822534 AACATGCAGAGGGGGATCGGG-CTGATCCCCGGCTTACGCATTATGCCTCTTCGGCC-AGCTCAG
66 AACACGCA-AGGGGCACCGGGTC-GATCCCTGGCTTACGCATTCTGCCTCTTCGGCCGA-CTAAG
* * *
15822597 TGCCCGCATGCTTGTTACGTGGGTTGACTTAG
128 TGCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
15822629 GCATACGGAGTTCATTCTCAT-TCTAAG-ATCAGACCAGACTGAGGGTTGCGACAGTAGGATTGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAAGACCGA
* * * *
15822692 CAGCACGTAAGGGGCACCGGGTCGATCCCTGGCTT--GCACTTCTGCCTC-TCCGCTGACTAAGT
65 CAACACGCAAGGGGCACCGGGTCGATCCCTGGCTTACGCA-TTCTGCCTCTTCGGCCGACTAAGT
15822754 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
15822785 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
15822814 TACGAAGTTC
Statistics
Matches: 281, Mismatches: 51, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
155 3 0.01
156 63 0.22
157 15 0.05
158 75 0.27
159 122 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAAGACCGAC
AACACGCAAGGGGCACCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGGCCGACTAAGTGC
CCGCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15822814 original size:26 final size:26
Alignment explanation
Indices: 15822785--15822837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15822775 GTTGGCTTAG
*
15822785 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15822811 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15822837 G
1 G
15822838 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15823994 original size:171 final size:170
Alignment explanation
Indices: 15823577--15823996 Score: 463
Period size: 170 Copynumber: 2.5 Consensus size: 170
15823567 ACGCATTCTA
* * * *
15823577 CCTCTCCGACCGGCTGTGCGCCCGTACGCTCGTTTCGTGAGTTGGTTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-
* * *
15823642 TCCCAGTCTAAG-ATCGAACTAGATCAAGGGTTACGGCAACAGGACCGACAGCAGGATCGACAGC
65 TCCCAGTCTAAGCACCGAACGAGACCAAGGGTTACGGCAACAGGACCGACAGCAGGATCGACAGC
* * * **
15823706 ACGCAGGGGGGATCGGGCTGATTCCCGGCTTGCCCATTCTG
130 ACACAGGGGGGATCGGGCTGATCCCCGGCTTACCCATTAAG
* **
15823747 CCTCTCCAGCCAACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** ** * *
15823812 TCCATGTCTAAGCACC-AGTCGA-ACCGAGGGTTGTGGCAACAGGATTGGCAGCGGGATCGACAG
66 CCCA-GTCTAAGCACCGA-ACGAGACCAAGGGTTACGGCAACAGGACCGACAGCAGGATCGACAG
* **
15823875 CACACAGAGGGGGA-CAGGGTTGATCCCCGGCTTACGTATTAAG
129 CACACAG-GGGGGATC-GGGCTGATCCCCGGCTTACCCATTAAG
* * * *
15823918 CCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCAG-GGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCA
15823982 TCCCCAGTCTAAGCA
65 T-CCCAGTCTAAGCA
15823997 TATGGCGTTC
Statistics
Matches: 208, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
169 4 0.02
170 105 0.50
171 95 0.46
172 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (170 bp):
CCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
CCCAGTCTAAGCACCGAACGAGACCAAGGGTTACGGCAACAGGACCGACAGCAGGATCGACAGCA
CACAGGGGGGATCGGGCTGATCCCCGGCTTACCCATTAAG
Found at i:15824698 original size:26 final size:26
Alignment explanation
Indices: 15824661--15824713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824651 GTTGACTTAG
*
15824661 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15824687 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15824713 G
1 G
15824714 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15824875 original size:26 final size:26
Alignment explanation
Indices: 15824845--15824896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824835 TTGGCTTAGC
*
15824845 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAAAGTTCATTCCCA-GTCTAAG
15824871 CATACAAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
15824897 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAG
Found at i:15824887 original size:183 final size:184
Alignment explanation
Indices: 15824578--15824916 Score: 423
Period size: 183 Copynumber: 1.8 Consensus size: 184
15824568 GCATGCAGGG
* * *
15824578 GGGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGTCGATTGAGCGCCCGCACGCTCA
1 GGGATCGGGCCGATCCCCAACTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCA
** * * **
15824643 TTTTGTGGGTTGACTTAGGCATACGAAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
66 TTTCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
*
15824708 TCTAAGATCAGATCAGACCGAGGGTTGCGAGAGCAGGATTGGTAGAACGTAGGT
131 TCTAAGATCAGACCAGACCGAGGGTTGCGAGAGCAGGATTGGTAGAACGTAGGT
* * ** ** * * *
15824762 GGGATCGGGTCGAT-CCCAGCTTACGTATTCTGCCTCTCTGGCCGACTGAGTGCCCGTACGCTCG
1 GGGATCGGGCCGATCCCCAACTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCA
* *
15824826 TTTCATGGGTTGGCTTAGCCATAC-AGAGTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCC
66 TTTCATGGGTTGACTTAGCCATACGA-AGTTCATCCCCA-GTCTAAGCATACAAAGTTCATTCCC
** *
15824889 AGTCTAAGATTGGACCGGACCGAGGGTT
129 AGTCTAAGATCAGACCAGACCGAGGGTT
15824917 ATGGTAGCAG
Statistics
Matches: 129, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
182 4 0.03
183 112 0.87
184 13 0.10
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.26
Consensus pattern (184 bp):
GGGATCGGGCCGATCCCCAACTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCA
TTTCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGAGAGCAGGATTGGTAGAACGTAGGT
Found at i:15825235 original size:26 final size:26
Alignment explanation
Indices: 15825199--15825251 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15825189 GTTGGCTTAG
15825199 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15825225 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15825251 G
1 G
15825252 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15826208 original size:159 final size:158
Alignment explanation
Indices: 15825961--15826419 Score: 456
Period size: 159 Copynumber: 2.9 Consensus size: 158
15825951 CGGATCGAGT
* * ** * * * * * *
15825961 GTTGCGACAGCAGGATCGGTAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTA
1 GTTGCGGCAGCAAGATCGACAGCA-GCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATG
* ** * * *
15826025 CCTCTCCGGTCGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT
65 CCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* ** * *
15826090 TCCATGTCTAAGCCCCAGTCGGACCGAGG
130 TCCATGTCTAAGCCCAAACCAGACCAAGG
* **
15826119 GTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATG
1 GTTGCGGCAGCAAGATCGACAGCA-GCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATG
* * * * *
15826184 CCTCTCCGATCGGCTCAACACCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
65 CCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
**
15826249 TCC-TAGTCTAAGATCAAACCAGACCAAGG
130 TCCAT-GTCTAAGCCCAAACCAGACCAAGG
** * * * * *
15826278 GTTGCGGCAGCAAGATCGATGGCA-CATAGGGGGGATTAGGTCGGTCCTCGACTTGCGCATTTTG
1 GTTGCGGCAGCAAGATCGACAGCAGCAGA-GGGGGATCAGGTCGATCCTCGACTTGCACATTATG
* * * * ** *
15826342 CCTTTCCAACCGACTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
65 CCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
15826407 TCCATGTCTAAGC
130 TCCATGTCTAAGC
15826420 ATATGGAGTT
Statistics
Matches: 244, Mismatches: 53, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 118 0.48
159 123 0.50
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GTTGCGGCAGCAAGATCGACAGCAGCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATGC
CTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCAAACCAGACCAAGG
Found at i:15826391 original size:158 final size:158
Alignment explanation
Indices: 15826055--15826418 Score: 417
Period size: 158 Copynumber: 2.3 Consensus size: 158
15826045 CCCGCATGCC
* * * ** * *
15826055 CATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCAAGGG
* **
15826120 TTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATGC
66 TTGCGGCAGCAAGATCGACAGCA-GCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATGC
* * *
15826185 CTCTCCGATCGGCTCAACACCCGCACACT
130 CTCTCCAACCGACTCAACACCCGCACACT
* * *
15826214 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAGACCAAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAAACCAGACCAAGG
** * * * * *
15826278 GTTGCGGCAGCAAGATCGATGGCA-CATAGGGGGGATTAGGTCGGTCCTCGACTTGCGCATTTTG
65 GTTGCGGCAGCAAGATCGACAGCAGCAGA-GGGGGATCAGGTCGATCCTCGACTTGCACATTATG
* * * *
15826342 CCTTTCCAACCGACTGAGCACCCGCACGCT
129 CCTCTCCAACCGACTCAACACCCGCACACT
** *
15826372 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15826419 CATATGGAGT
Statistics
Matches: 170, Mismatches: 32, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
157 3 0.02
158 95 0.56
159 72 0.42
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCAAGGG
TTGCGGCAGCAAGATCGACAGCAGCAGAGGGGGATCAGGTCGATCCTCGACTTGCACATTATGCC
TCTCCAACCGACTCAACACCCGCACACT
Found at i:15826422 original size:26 final size:26
Alignment explanation
Indices: 15826392--15826444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15826382 GTTGGCTTAG
15826392 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15826418 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15826444 G
1 G
15826445 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15827097 original size:517 final size:512
Alignment explanation
Indices: 15825864--15827448 Score: 1342
Period size: 517 Copynumber: 3.1 Consensus size: 512
15825854 TTGAGCGTCT
* * * * * *
15825864 GCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTTATCCCCA-GTCTAAGCATATGCAG
1 GCACGCTTGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCAT-TCCATGTCTAAGCATACGGAG
* * * * * * *
15825927 TTCATTCTCAATCTAAGATCGGATCGGATCGAGTGTTGCGACAGCA-G----G-ATC-GG-T---
64 TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGACCAGCAACAGGATCAA
* * * * *
15825981 -AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGTG
129 CAGCACGCA-GGGGGACCGGACCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCG
* * * * **
15826045 CCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
193 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * * *
15826110 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGATCAGGTCGATCCTCGACTTG
258 AGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCGACTTG
** * *
15826175 CACATTATGCCTCTCCGATCGGCTCAACACCCGCACACTCATTTTGTGGGTTGACTTAGGCATAC
323 CACATTACACCTCTCCGATCGGCTCAACACCCGCACACTCATTTCGTGGGCTGACTTAGGCATAC
* ** ** *
15826240 GGAGTTCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCAAGATCGATGGCACAT
388 GAAGTTCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTGCGAAAGCAAGATCGACAGCACAC
** ** * * *
15826305 AGGGGGGATTAGGTCGGTCCTCGACTTGCGCATTTTGCCTTTCCAACCGACTGAGCACCC
453 AGGGGGGACCAGGTCAATCCTCGACTTACGCATTCTACCTTTCCAACCGACTGAGCACCC
* *
15826365 GCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTT
1 GCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTT
** * * ** ***
15826430 CATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGTAGGACCAGCAGTAGGATCGGTA
66 CATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGACCAGCAACAGGATCAACA
* * * ** *
15826495 GCATGCAGGGGGACC-GAGCCAATCCCCGGCTTGCGCATTCTTTCTCTCCGGCCGATTGAGCGCC
131 GCACGCAGGGGGACCGGA-CCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCC
* * * * *
15826559 CGCAC-ATCCGTTTCATGGGTTGGCTTAGGTATAGGGAGATCATTCTATGTCTAAGCCCCAACCA
195 CGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
* *
15826623 GACCGAAGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACC-GAGTCGATCCTCGACTTG
259 GACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAG-GTCGATCCTCGACTTG
*** * * *
15826687 TC-CATTACACCTCT-C-ATGCCGGCTCAGTGCCTGCACGCTCGTTTCGTGGGCTGACTTAGGCA
323 -CACATTACACCTCTCCGAT--CGGCTCAACACCCGCACACTCATTTCGTGGGCTGACTTAGGCA
** * * *
15826749 TACGAAGTTCATTTCC-AGTCTAAGATCGGATCTGACCAAGGGTTGCGAAAGCAGGATCGACAGC
385 TACGAAGTTCA-TTCCTAGTCTAAGATCAAACCAGACCAAGGGTTGCGAAAGCAAGATCGACAGC
** * * * * ** *
15826813 ATGCAGTGGGGGACC-GGGCTAATCCTC-AGCTTACGTATTCTACCTCTT-CGATCGGTTGAGCG
449 ACACAG-GGGGGACCAGGTC-AATCCTCGA-CTTACGCATTCTACCT-TTCCAACCGACTGAGCA
15826875 CCC
510 CCC
*
15826878 GCACGCATGCTTGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
1 GCA--C--GCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
** *
15826943 AGTTCATTCGTAGTCTAAGATCGGACCGGATCAAGGGTTGCCG-CAGCAGGACCAGCAACAGGAT
62 AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG-CGACAGCAGGACCAGCAACAGGAT
* * * *
15827007 CAACAGCACGTAGGGGGACCGGACCGATCCTCGGCTTGCACATTCTGCCTCTTCGGCCGGTTGAG
126 CAACAGCACGCAGGGGGACCGGACCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAG
* * * * * * *
15827072 CGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCGTAGGTAGTTCATTCCATGTCTATGTCCCAG
191 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * *** * * * * *
15827137 TCGGACTG-AGGATTGTGGCAGCGAGACCGTTGGCACACAGAGGGGAATCAGGCCGATCCTCGGC
256 CCAGACCGAAGG-TTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCGAC
* ** * ** * * * * * *
15827201 TTGCGCATTATGCCTCTCTGGCCAGCTTAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCA
320 TTGCACATTACACCTCTCCGATCGGCTCAACACCCGCACACTCATTTCGTGGGCTGACTTAGGCA
* **** * ** * * *
15827266 TACGGAGTTCATT-CTCAGTCTAAGATTGGGCCGGACTGAGGGTTACGACAGCATGATCGACAGC
385 TACGAAGTTCATTCCT-AGTCTAAGATCAAACCAGACCAAGGGTTGCGAAAGCAAGATCGACAGC
* * * ** * ** *
15827330 ACGCAGGAGGGATC-GGATTGATCC-CTGGCTTACGCATTCTACCACTCCAGCC-AGCTGAGCGA
449 ACACAGGGGGGACCAGG-TCAATCCTC-GACTTACGCATTCTACCTTTCCAACCGA-CTGAGC-A
15827392 -CC
510 CCC
** * * *
15827394 GCACGCTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
15827449 CCCAGCTGGA
Statistics
Matches: 865, Mismatches: 174, Indels: 79
0.77 0.16 0.07
Matches are distributed among these distances:
500 3 0.00
501 92 0.11
502 2 0.00
506 1 0.00
507 1 0.00
508 2 0.00
509 1 0.00
510 2 0.00
511 3 0.00
512 298 0.34
513 50 0.06
514 3 0.00
515 4 0.00
516 44 0.05
517 353 0.41
518 6 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (512 bp):
GCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGACCAGCAACAGGATCAACA
GCACGCAGGGGGACCGGACCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCTCGACTTGCAC
ATTACACCTCTCCGATCGGCTCAACACCCGCACACTCATTTCGTGGGCTGACTTAGGCATACGAA
GTTCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTGCGAAAGCAAGATCGACAGCACACAGG
GGGGACCAGGTCAATCCTCGACTTACGCATTCTACCTTTCCAACCGACTGAGCACCC
Found at i:15828130 original size:26 final size:26
Alignment explanation
Indices: 15828094--15828143 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15828084 GGCTTAGGCG
*
15828094 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
15828120 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
15828144 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:15828821 original size:26 final size:26
Alignment explanation
Indices: 15828781--15828833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15828771 GTTGACTTAG
*
15828781 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
*
15828807 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
15828833 G
1 G
15828834 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:15829297 original size:158 final size:157
Alignment explanation
Indices: 15828807--15829308 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
15828797 CCCAGTCTAA
* ** * * **
15828807 GCATACGGAGATCATTCCCA-GTCTAAGATCGGATTGGACTGAGGGCTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * *
15828871 AGCACGCAGAGGGGACCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAG-GGGGACGA-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* * *
15828936 TCGCA-TGCCCGTTTCATGGGTTGGCTTAG
128 TCGCACAGCTCATTTCATGGGTTGGCTTAG
* * ** * * * * *
15828965 GCATA-GAAAGTTCATTCCATGTCTAAG-CCCCAGTCAAACCAAGGGTTGCAGTAGCGGGATCGG
1 GCATACG-GAGTTCATTCCATGTCTAAGATCGGA-TCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * *
15829028 TAGCACGCAGAGGGGGACCG-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAG
64 CAGCACGC--AGGGGGA-CGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAG
* * *
15829092 TGC-C-CACACGCTCATTTCATAGGTTGACTTAG
125 CGCTCGCACA-GCTCATTTCATGGGTTGGCTTAG
* * **
15829124 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGCAGCAATAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * *
15829188 AGCACGCAGGGGGATCGAGCTGATCCCCCGCTTACGCATTCTGCCTCTCCGACCAGTTGAGCGCT
65 AGCACGCAGGGGGA-CGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCT
15829253 CGCACAGCTCATTTCATGGGTTGGCTTAG
129 CGCACAGCTCATTTCATGGGTTGGCTTAG
15829282 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15829309 CATACGGAGT
Statistics
Matches: 272, Mismatches: 56, Indels: 32
0.76 0.16 0.09
Matches are distributed among these distances:
157 56 0.21
158 94 0.35
159 114 0.42
160 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGACGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCTCG
CACAGCTCATTTCATGGGTTGGCTTAG
Found at i:15829312 original size:26 final size:26
Alignment explanation
Indices: 15829282--15829334 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15829272 GTTGGCTTAG
15829282 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15829308 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15829334 G
1 G
15829335 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15829687 original size:26 final size:26
Alignment explanation
Indices: 15829657--15829713 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
15829647 ATGGGTTGAC
15829657 TTAAGCATACGAAGTTCATCCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAGT
*
15829683 TTAAGCATACGAAGTTCATTCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAGT
*
15829709 CTAAG
1 TTAAG
15829714 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATCCCCAGT
Found at i:15837129 original size:159 final size:157
Alignment explanation
Indices: 15836942--15837303 Score: 469
Period size: 159 Copynumber: 2.3 Consensus size: 157
15836932 CGTACGCCCA
* * * *
15836942 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAGACTGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACTGAGGGT
* **
15837006 TGTGGCAGCAAGACCGATAGCACGTAGAGGTGGACCGAACTGATCCCCGGCTTGCGCATTATGCC
65 TGTGGCAGCAAGACCGATAGCACGTAG-GGGGGACCGAACCAATCCCCGGCTTGCGCATTATGCC
* *
15837071 TGTCCAACTGGCTCAGCACCCGCACGCTTG
129 TCTCCAAC-AGCTCAGCACCCGCACGCTTG
** *
15837101 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGATTGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACTGAGGGT
* * ** * *
15837165 TGTGGTAGCAAGATCGATAGCACGTAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCT
65 TGTGGCAGCAAGACCGATAGCACGTAGGGGGGACCGAACCAATCCCCGGCTTGCGCATTATGCCT
** *
15837230 CTCCGGCAGCTGAGCACCCGCACGCTTG
130 CTCCAACAGCTCAGCACCCGCACGCTTG
15837258 TTTCATGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15837304 ATACAGAGTT
Statistics
Matches: 177, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
156 1 0.01
157 60 0.34
158 39 0.22
159 77 0.44
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACTGAGGGTT
GTGGCAGCAAGACCGATAGCACGTAGGGGGGACCGAACCAATCCCCGGCTTGCGCATTATGCCTC
TCCAACAGCTCAGCACCCGCACGCTTG
Found at i:15837306 original size:26 final size:26
Alignment explanation
Indices: 15837276--15837328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15837266 GTTAGCTTAG
*
15837276 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
15837302 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
15837328 G
1 G
15837329 ATTAGGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:15837696 original size:26 final size:26
Alignment explanation
Indices: 15837656--15837708 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15837646 GTTGACTTAG
*
15837656 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGCTCATCCCCAATCTAA
* * *
15837682 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAATCTAA
15837708 G
1 G
15837709 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAATCTAA
Found at i:15838083 original size:162 final size:158
Alignment explanation
Indices: 15837722--15838114 Score: 518
Period size: 162 Copynumber: 2.5 Consensus size: 158
15837712 GGATCGGATC
* * * * * * *
15837722 GAGGGTTGCGGTAGCAGGATCGACAGCAAGCAAGGGGGACCGAGCCGATCCCCAACTTGTGCAAT
1 GAGGGTTGTGGTAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
* * * * * * *
15837787 CTACCTCTCCGATTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGATTT
66 CTGCCTCTCCGACTGGATGAGAGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * *
15837852 CATTTCATGTCTAAGCCCCAGCTGGATT
131 CATTCCATGTCTAAGCCCCAGCCGGACT
* * * *
15837880 GAGGGTTGTGGCAGCGGGATCGACAGCACGC-AGGAGGGATCGGGCCGATCCCCGACTTACACAT
1 GAGGGTTGTGGTAGCGGGATCGACAGCACGCAAGG-GGGATCGGGCCGATCCCCAACTTGCGCAT
15837944 TCTGCCTCTCCCCGACTGGATGAGAGCCCGCACACGCCGTTTCATGGGTTGGCTTAGGCATAGGG
65 TCTGCCTCT--CCGACTGGATGAGAGCCCGCACAC-CCGTTTCATGGGTTGGCTTAGGCATAGGG
15838009 AGTTCATTCCATGTCTAAGCCCCCAGCCGGACT
127 AGTTCATTCCATGTCTAAG-CCCCAGCCGGACT
* *
15838042 GAGGGTTGTGGTAGCGGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCAACTTGCGCATT
1 GAGGGTTGTGGTAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
*
15838107 ATGCCTCT
66 CTGCCTCT
15838115 TCGGTCGGCT
Statistics
Matches: 201, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
157 3 0.01
158 57 0.28
160 20 0.10
161 45 0.22
162 73 0.36
163 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
GAGGGTTGTGGTAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
CTGCCTCTCCGACTGGATGAGAGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACT
Found at i:15838347 original size:26 final size:26
Alignment explanation
Indices: 15838318--15838370 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15838308 GTTGGCATAG
15838318 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
15838344 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15838370 G
1 G
15838371 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15839357 original size:159 final size:157
Alignment explanation
Indices: 15838966--15839543 Score: 597
Period size: 158 Copynumber: 3.6 Consensus size: 157
15838956 ACCACCCGTT
* * * * * *
15838966 CGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCC-GCACACTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTC-CGTCGGTTGAGC-ACCTGCACGCTCGTTTCATGGG
* * * * *
15839030 TTGACTTAGGCATATGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
64 TTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGC
* *
15839094 AGGATCGACAGCACGCAGGAGGGATCAGGC
128 AGGATCGACAGCACGCAGGGGGGATCGGGC
* * * * * *
15839124 CGATCCCCGGCTTGCGCATTCTACCTCTCCGGCAGGTTGAGCGCCCGCATGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGTC-GGTTGAGCACCTGCACGCTCGTTTCATGGGT
* * * * * ** * * *
15839189 TGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAG-CCCCAGTCAGACCGAGCGTTATGGCAGCG
65 TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCGGA-TCAGACCGAGGGTTGTGGCAGCA
* *
15839253 GGACCGACAGCACGCAGAGGGGGACCGGGC
129 GGATCGACAGCACGCAG-GGGGGATCGGGC
** * * * * *
15839283 CGATCTTCAGCTTGTGCATTCTGCCTCTTCGATCGGCTCAGCACCTGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TCGGTTGAGCACCTGCACGCTCGTTTCATGGGT
* * * *
15839348 TGACTTAGGCATACGAATTTCATTCCCA-ATCTAAGATCGGATCGGGCCGAGGGTTGTGGCAGCA
65 TGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCA
* *
15839412 AGATCGACAGCACGCAGTGGGGATCGGGC
129 GGATCGACAGCACGCAGGGGGGATCGGGC
* *
15839441 CGATCCCCGGCTTGCACATTCTGCCTCTCCGTCGGTTGAGCACCTGCAGGCATGCTTGTTTCATG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGTTGAGCACCTGCA--C--GCTCGTTTCATG
*
15839506 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
62 GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
15839544 CATACGAAGT
Statistics
Matches: 338, Mismatches: 69, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
157 21 0.06
158 147 0.43
159 119 0.35
160 9 0.03
161 42 0.12
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGTTGAGCACCTGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGG
ATCGACAGCACGCAGGGGGGATCGGGC
Found at i:15839568 original size:26 final size:26
Alignment explanation
Indices: 15839517--15839569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15839507 GTTGGCTTAG
*
15839517 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGACTAA
15839543 GCATACGAAGTTCATTCCCA-GACTAA
1 GCATACGAAGTTCATT-CCATGACTAA
15839569 G
1 G
15839570 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGACTAA
Done.