Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 102 of 138
Found at i:15839923 original size:26 final size:26
Alignment explanation
Indices: 15839886--15839938 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15839876 GTTAACTTAG
15839886 GCATACTGAGTTCATCCCCAATCTAA
1 GCATACTGAGTTCATCCCCAATCTAA
* *
15839912 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACTG-AGTTCATCCCCAATCTAA
15839938 G
1 G
15839939 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACTGAGTTCATCCCCAATCTAA
Found at i:15840684 original size:26 final size:26
Alignment explanation
Indices: 15840654--15840706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15840644 GTTGGCTTAG
15840654 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
15840680 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
15840706 G
1 G
15840707 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:15840928 original size:26 final size:26
Alignment explanation
Indices: 15840858--15840919 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
15840848 AGGCATATGT
*
15840858 AGTTCATTTCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
15840884 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATGTCTAAGCATACGG
15840910 AGTTCATTCC
1 AGTTCATTCC
15840920 CAGTGTAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACGG
Found at i:15844397 original size:26 final size:26
Alignment explanation
Indices: 15844368--15844420 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15844358 GTTGACTTAG
*
15844368 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
15844394 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15844420 G
1 G
15844421 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15844895 original size:159 final size:157
Alignment explanation
Indices: 15844394--15844896 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 157
15844384 CCTAGTCTAA
* * * *
15844394 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAAGGTTACGGCAGCAGGATCGGTG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGCAGCAGGATCGGTA
* * * * *
15844459 GCACGCAGGGGGGATTGGGCCAATCCCCGACTTGCGCATTCTACCT-TTCTGGCCGGCTGAGCAC
66 GCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTTC-GGCCGGCTGAGCGC
* *
15844523 CTGCATGCCCATTTCATGGGTTGGCTTAG
130 C-CCATGCTCATTTCATGGGTTGGCTTAG
** * * * * * *
15844552 GCATAGCG-AGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTATGGCAGCGGGACCG
1 GCATA-CGAAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACTGAGGGTTACGGCAGCAGGATCG
* * * * * *** *
15844614 GTAGCACACAGAGGAGGATCGGGTCGATCCCCGGCTTGGGCATTATGCCTCTTCGATTGGCTCAG
63 GTAGCACGCAGAGG-GGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAG
* * *
15844679 CGCCCACATGTTCGTTTCATGGGTTGACTTAG
127 CGCCC-CATGCTCATTTCATGGGTTGGCTTAG
* * * **
15844711 GCATACGAAGTTCATTCCCAATCTAAGATTGGATCGGACTGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGCAGCAGGATCGGTA
* * * *
15844776 GCACGCAGAGAGGGACCAGGTCGATCCCCGACTTACGCATTCTACCTCTTCGGCCGACTGAGCGC
66 GCACGCAGAG-GGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGC
*
15844841 CCCTACGCTCATTTCATGGGTTGGCTTAG
130 CCC-ATGCTCATTTCATGGGTTGGCTTAG
* *
15844870 CCATATGAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
15844897 CATACAGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 61 0.23
159 198 0.74
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGCAGCAGGATCGGTA
GCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCC
CCATGCTCATTTCATGGGTTGGCTTAG
Found at i:15845187 original size:106 final size:106
Alignment explanation
Indices: 15845002--15845198 Score: 252
Period size: 106 Copynumber: 1.9 Consensus size: 106
15844992 TTGATCCCCA
* *
15845002 GCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTAAGC
1 GCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTAAGC
*
15845067 CATACGAAGTTCATTCCCA-GTCTAAGATGGGCCGATCCCTG
66 CATACGAAGCTCATT-CCATGTCTAAGATGGGCCGATCCCTG
* * * ** * * * *
15845108 GCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCTGGCCCGTTTCATGGTTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTAAGC
* *
15845173 CATAGGGAGCTCATTCCATGTCTAAG
66 CATACGAAGCTCATTCCATGTCTAAG
15845199 GCCCAGCTGG
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
105 3 0.04
106 73 0.96
ACGTcount: A:0.16, C:0.30, G:0.26, T:0.27
Consensus pattern (106 bp):
GCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTAAGC
CATACGAAGCTCATTCCATGTCTAAGATGGGCCGATCCCTG
Found at i:15845398 original size:159 final size:160
Alignment explanation
Indices: 15845095--15845751 Score: 569
Period size: 159 Copynumber: 4.1 Consensus size: 160
15845085 AGTCTAAGAT
* * * * * * *
15845095 GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCT-GGCCCGTTTCA
1 GGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCG-TACGCTCGTTTCA
* * * * ** * * *
15845159 TGGTTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG-GCCCAGCTGGACCGAGGGTTGTGG
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGA
* * *
15845223 CAGCGGGACTGGCAGCACACAGA-GGGGGACC
129 CAGCAGGACAGACAGCACACAGAGGGGGGACC
** * * * * *
15845254 GAACCGATCCCTGGCTTGCGCATTCTACCTCTCTGATCGGCTCAGTGCCTGTACGCTCGTTTCAT
1 GGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCAT
* * *
15845319 GGGTTGACTTAGGCATACGGAGTTCATTCGCA-GTCTAAGATCGGACCGGACCGAGGGTTACGAT
66 GGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGATCGGACCGGACCGAGGGTTGCGAC
*
15845383 AGCAGGATC-GACAGCACGCA-AGGGGGGACC
130 AGCAGGA-CAGACAGCACACAGAGGGGGGACC
* * * * * * *
15845413 GGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGA-CTGGCTGAACGCCCGCATGCTCGTTTCA
1 GGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGATC-GGCTGAGCGCCCGTACGCTCGTTTCA
* * **
15845477 TGGGTTGGCTTAGGCAGACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACCGAGGGTTGCGA
65 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGA
*
15845541 CAGCAGGACAGCAGCAGGATCGATAGCACGCAGGGGGGACC
129 CAGCAGGACAG-A-CA-G--C-ACA-CA-G-AGGGGGGACC
* * * * *
15845582 GGGCCAATCCCTGACTTCCGCATTCTACCTCTCCGATCAGTTGAGCGCCTGTACGCTCGTTTCAT
1 GGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCAT
* ** * *
15845647 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGC
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGAC
** ** *
15845711 AGTGGGACTTACAGCACATAGA-GGGGGACC
130 AGCAGGACAGACAGCACACAGAGGGGGGACC
**
15845741 AAGCCGATCCC
1 GGGCCGATCCC
15845752 CAGCTTGCNN
Statistics
Matches: 400, Mismatches: 77, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
158 4 0.01
159 250 0.62
160 8 0.02
161 3 0.01
162 2 0.00
163 2 0.00
164 2 0.00
165 1 0.00
166 3 0.01
167 2 0.00
168 5 0.01
169 117 0.29
170 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (160 bp):
GGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCAT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACA
GCAGGACAGACAGCACACAGAGGGGGGACC
Found at i:15847503 original size:25 final size:26
Alignment explanation
Indices: 15847468--15847518 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15847458 GTTGGCTTAG
15847468 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15847494 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15847519 ATCGGGCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15847862 original size:26 final size:26
Alignment explanation
Indices: 15847832--15847884 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15847822 GTTGACTTAG
15847832 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15847858 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15847884 G
1 G
15847885 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15848168 original size:159 final size:159
Alignment explanation
Indices: 15847944--15848363 Score: 360
Period size: 160 Copynumber: 2.6 Consensus size: 159
15847934 GGGACCAGAT
** * * ** * * * * * *
15847944 CGATCCCTGACTTGTGCATTCTGCCTATCCGGTCTGCTGAGAGCCCGCACACCCGTTTCATGGGT
1 CGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACACCCATTTCGTGGGT
* * * * **
15848009 TGGCTTAGGGATATGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGACAGCAG
**
15848074 GATCGGTAGCAC-ACAGAGAGGGATCGGGC
131 GATCGACAGCACGA-AGAGAGGGATCGGGC
* ** * *
15848103 CGAT-TCTCGACTTGCGTATTATGCCTCTCCGACTGGCTCAGTGCCCGAACACCCATTTCGTGGG
1 CGATCCCT-GACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACACCCATTTCGTGGG
* * * ** ** * **
15848167 TTAGACTTAGGCATACGAAGTTAATTCCCA-GTCTAAGATCGGATCGGATTGAAGGTTGTGACAG
65 TT-GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGACAG
* * *
15848231 CAGGATCGACAGCACGAAGGGGGGGATCGGGT
128 CAGGATCGACAGCACGAAGAGAGGGATCGGGC
* ** * * * *
15848263 CGATCCCTGACTTGCACATTCTGCCTCTTTGGCCGGCTGAGCGCCCGTACACTCATTTCGTGGGT
1 CGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACACCCATTTCGTGGGT
* *
15848328 TGGCTTAGGCATACAGAGTACATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15848364 ATACGAAGTT
Statistics
Matches: 202, Mismatches: 53, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
158 5 0.02
159 74 0.37
160 117 0.58
161 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACACCCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGACAGCAG
GATCGACAGCACGAAGAGAGGGATCGGGC
Found at i:15848365 original size:26 final size:26
Alignment explanation
Indices: 15848336--15848388 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15848326 GTTGGCTTAG
15848336 GCATAC-AGAGTACATT-CCATGTCTAA
1 GCATACGA-AGTACATTCCCA-GTCTAA
*
15848362 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATTCCCAGTCTAA
15848388 G
1 G
15848389 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTACATTCCCAGTCTAA
Found at i:15848580 original size:26 final size:26
Alignment explanation
Indices: 15848532--15848584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15848522 GTTGACTTAG
**
15848532 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
15848558 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
15848584 G
1 G
15848585 ATTGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:15848748 original size:26 final size:26
Alignment explanation
Indices: 15848718--15848768 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15848708 TGGCTTAGGT
15848718 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
15848744 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
15848769 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:15848805 original size:184 final size:184
Alignment explanation
Indices: 15848447--15848927 Score: 489
Period size: 184 Copynumber: 2.6 Consensus size: 184
15848437 ACAATAGCAG
* * * ** * * *
15848447 GGGGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGTGCTCGCACGCT
1 GGGGGACCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCC
** * *
15848512 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTGCATTCCT
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCC
* * * *
15848577 AGTCTAAGATTGAATCGGACCAAGGGTTACGACAGCAGGATCGGTAGTATGCAA
131 AGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCGGTAGTATGCAA
* ** * *
15848631 GGGGGATCGGGCTGATCCCCGGCTTACACATTCTACCTTTCCGGTTGACTGAGCGCCCGCACGCC
1 GGGGGACCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCC
* * *
15848696 CGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCC
* ** * ** * * * *
15848761 AGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAG
131 AGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCGGTAGTATGCAA
* * * * * * * * * *
15848815 GGGGGACTGGGTCAATTCTCGGCTTGCACATTCTGCCTCTCC-GACCAGCTGATCGCCCGCATGC
1 GGGGGACCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCGGTCGA-CTGAGCGCCCGCACGC
* * * * *
15848879 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
65 CCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
15848928 CCAAGTCAGA
Statistics
Matches: 241, Mismatches: 54, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
183 5 0.02
184 236 0.98
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GGGGGACCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCC
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCC
AGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCGGTAGTATGCAA
Found at i:15849254 original size:26 final size:26
Alignment explanation
Indices: 15849218--15849270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15849208 GTTGGCCTAG
*
15849218 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15849244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15849270 G
1 G
15849271 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15849663 original size:26 final size:26
Alignment explanation
Indices: 15849624--15849676 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15849614 GTTGGCTTTG
* * **
15849624 GCATACGGATTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15849650 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15849676 G
1 G
15849677 AGTTTGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15850384 original size:26 final size:26
Alignment explanation
Indices: 15850355--15850407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850345 GTTGACTTAG
15850355 GCATGCAGAGTTCA-TCCCTAGTTTAA
1 GCATGCAGAGTTCATTCCC-AGTTTAA
*
15850381 GCATGCGGAGTTCATTCCCAGTTTAA
1 GCATGCAGAGTTCATTCCCAGTTTAA
15850407 G
1 G
15850408 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATGCAGAGTTCATTCCCAGTTTAA
Found at i:15850856 original size:158 final size:160
Alignment explanation
Indices: 15850474--15851083 Score: 549
Period size: 159 Copynumber: 3.8 Consensus size: 160
15850464 CCAATCTTCA
* * * * *
15850474 GCTTGTGCATTCTGCCTCTCTGGCCGTCTGAGAACCCGCACGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * **
15850539 CATAGGGAGTTCATTC-CATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGTGGGA-CTGA
66 CATATGGAGTTCATTCTCATGTCTAAG-CCCAGATCGAACCGAGGGTTGTGGCAGCAGGATC-GA
* *
15850601 CAGCACGTAGAAGGGGATCGAGATGATCCTCG
129 CAGCACGCAGAAGGGGATCGGGATGATCCTCG
* * * * * * * *
15850633 GCTTACGCATTTTGCCTCTTCGACCGGCTCAGAGCCGGCACACTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* **
15850698 CATATGGAGTTCATTCTGA-GTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACA
66 CATATGGAGTTCATTCTCATGTCTAAGCCCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
15850762 GCACGCA-ATGGGGACCGGGTTGATCCTCG
131 GCACGCAGAAGGGGATCGGGATGATCCTCG
* * * *
15850791 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
**
15850856 CATACAGAGTTCATT-TCATGTCTAAGCCCTAG-TC-AGACCGAGGGTTGTGCAGCAAGACCGGA
66 CATATGGAGTTCATTCTCATGTCTAAGCCC-AGATCGA-ACCGAGGGTTGTG--GC-AG--C---
* * * *
15850918 AGCGAGATCGGCAGCATGCAGAGGGGGATCGGGCTGAT-CTCCG
121 A--G-GATCGACAGCACGCAGAAGGGGATCGGGATGATCCT-CG
* ** * * * * *
15850961 GCTTGCGCATTCTACCTCTTTGGCTGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
15851026 CATATGAAGTTCATTC-CATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCAGGA
66 CATATGGAGTTCATTCTCATGTCTAAG-CCCAGATCGAACCGAGGGTTGTGGCAGCAGGA
15851084 CTGGCAGCGG
Statistics
Matches: 365, Mismatches: 63, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
157 3 0.01
158 109 0.30
159 110 0.30
160 5 0.01
161 2 0.01
162 1 0.00
163 1 0.00
165 1 0.00
166 1 0.00
167 2 0.01
168 2 0.01
169 15 0.04
170 110 0.30
171 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATATGGAGTTCATTCTCATGTCTAAGCCCAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAAGGGGATCGGGATGATCCTCG
Found at i:15851071 original size:170 final size:169
Alignment explanation
Indices: 15850754--15851074 Score: 430
Period size: 170 Copynumber: 1.9 Consensus size: 169
15850744 GTGGCAGCAG
* * *
15850754 GATCGACAGCACGCAATGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGC
1 GATCGACAGCACGCAAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGC
*
15850819 TGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCC
66 TGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
* **
15850884 CTAGTCAGACCGAGGGTTGTGCAGCAAGACCGGAAGCGA
131 CCAACCAGACCGAGGGTTGTGCAGCAAGACCGGAAGCGA
* * * ** *
15850923 GATCGGCAGCATGCAGAGGGGGATCGGGCTGAT-CTCCGGCTTGCGCATTCTACCTCTTTGGCTG
1 GATCGACAGCACGCA-AGGGGGACCGGGCTGATCCT-CGGCTTGCGCATTCTACCTCTCCGGCCG
* ** * *
15850987 GTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-TGAAGTTCATTCCATGTCTAA
64 GCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAA
*
15851051 GCCCCAACCGGACCGAGGGTTGTG
128 GCCCCAACCAGACCGAGGGTTGTG
15851075 GTAGCAGGAC
Statistics
Matches: 130, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
169 16 0.12
170 114 0.88
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (169 bp):
GATCGACAGCACGCAAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGC
TGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
CCAACCAGACCGAGGGTTGTGCAGCAAGACCGGAAGCGA
Found at i:15851939 original size:26 final size:26
Alignment explanation
Indices: 15851908--15851959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15851898 TGACTTAGGC
*
15851908 ATACGGAGTTCA-TCCCTAGTTTAAGA
1 ATACGGAGTTCATTCCCT-GTCTAAGA
15851934 ATACGGAGTTCATTCCCTGTCTAAGA
1 ATACGGAGTTCATTCCCTGTCTAAGA
15851960 TCGAATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCTGTCTAAGA
Found at i:15853667 original size:26 final size:26
Alignment explanation
Indices: 15853637--15853687 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15853627 TGACTTTGGT
15853637 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
15853663 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15853688 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15854161 original size:158 final size:156
Alignment explanation
Indices: 15853661--15854162 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 156
15853651 CCTAGTCTAA
* * * *
15853661 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCG-ATCGAGGGTTGAGGCAGTAGGATCGACA
* ** *
15853726 GCATGAAGGTAGGACCGGGTCGATCCCCTGCTTGCGCATTCTACCTCTTCC-A-TCGGCTGAGCG
65 GCATGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTC-TCCGACT-GGCTGAGCG
*
15853789 CCCGCACGCCCGTTTAGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTAGTGGGTTGGCTTAG
** * ** * ** * *
15853819 GCATAGGGAGTTTATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTCTGGCAGTGGGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATTAGACC-GATCGAGGGTTGAGGCAGTAGGATCGA
* ** * * * * * *
15853882 TAGCACACAGAGGGGTACCGGG-CTGATCCCCGGCTTACGCATTATGCCTCTTCGACCGGCTCAG
63 CAGCATGCAG-GGGGGACCGGGTC-GATCCCC-GCTTGCGCATTCTGCCTCTCCGACTGGCTGAG
* * *
15853946 CACCCGCACGCTCGTTTCA-TGGGTTGACTTAT
125 CGCCCGCACGCTCGTTT-AGTGGGTTGGCTTAG
* * * *
15853978 GCATACAGAGTTCATTCCCAATCTAAGATTGGACTCGATCGAGGGTTGAGGCAGCAGGATCGACC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGAC-CGATCGAGGGTTGAGGCAGTAGGATCGACA
* * * *
15854043 GCATGCAGGGGGGACTGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGTTGAGTGCC
65 GCATGCAGGGGGGACCGGGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
*
15854108 CGCACACTCGTTCT-GTGGGTTGGCTTAG
129 CGCACGCTCGTT-TAGTGGGTTGGCTTAG
*
15854136 GCATACAAAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
15854163 CATACGGAGT
Statistics
Matches: 266, Mismatches: 62, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 7 0.03
158 139 0.52
159 115 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGATCGAGGGTTGAGGCAGTAGGATCGACAG
CATGCAGGGGGGACCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCG
CACGCTCGTTTAGTGGGTTGGCTTAG
Found at i:15854165 original size:26 final size:26
Alignment explanation
Indices: 15854136--15854188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15854126 GTTGGCTTAG
15854136 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
15854162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15854188 G
1 G
15854189 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15854907 original size:26 final size:26
Alignment explanation
Indices: 15854870--15854922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15854860 GTTAACTTAC
* *
15854870 GCATACGGAGTTCATACCCTGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
15854896 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
15854922 G
1 G
15854923 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:15855103 original size:26 final size:26
Alignment explanation
Indices: 15855053--15855105 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15855043 GTTAGCTTAG
* *
15855053 GCATACAGTGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15855079 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15855105 G
1 G
15855106 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15855590 original size:159 final size:155
Alignment explanation
Indices: 15855350--15855789 Score: 447
Period size: 157 Copynumber: 2.8 Consensus size: 155
15855340 CAACAGGATC
* * * * * *
15855350 GACAGCATGCAGGGGGG-CCGAGCCGATCCCTAGCTTACGCATTCTGCCTCTTCGATTGGCTGAG
1 GACAGCACGCAGGGGGGACCGGGCCGATCCCCA-CTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
* * *
15855414 CGCCTGCAC-CCCTGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCAGTCCATGTCTAAGCCCCA
65 CGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCA
*
15855478 GCCAGACTGAGGGTTG-TGGCAGCAAGACT
128 -ACAGACTGAGGGTTGCT-GCAGCAAGACT
* * *
15855507 GACAGCACGCAGAGGGGGACCGGGTCGATCCCCACCTTGCGCATTATGCCTCTTCGGTCGGCTCA
1 GACAGCACGCAG-GGGGGACCGGGCCGATCCCCA-CTTGCGCATTCTGCCTCTTCGGTCGGCTGA
* * * * * * ** *
15855572 GTGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTTATTCCCA-GTGTAAGATCG
64 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATT-CCATGTCTAAGCCCC
* * *
15855636 AACAGACTGAGGGTTGCTGCATCTAGATT
127 AACAGACTGAGGGTTGCTGCAGCAAGACT
* * * * * *
15855665 GACAGCACGAAGGGGGGACCGGGCCGATCTCCGACTTGTGCATTCTGCCTCTCCGGCCAGCTGAG
1 GACAGCACGCAGGGGGGACCGGGCCGATC-CCCACTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
* * *
15855730 CGCCCGTACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGC
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGC
15855790 ATACAGAGTT
Statistics
Matches: 229, Mismatches: 45, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 97 0.42
158 44 0.19
159 81 0.35
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (155 bp):
GACAGCACGCAGGGGGGACCGGGCCGATCCCCACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAACA
GACTGAGGGTTGCTGCAGCAAGACT
Found at i:15855812 original size:26 final size:26
Alignment explanation
Indices: 15855762--15855812 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15855752 GTTGGCTTAG
* ***
15855762 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15855788 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
15855813 TGATTTTGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15856522 original size:26 final size:26
Alignment explanation
Indices: 15856486--15856536 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15856476 TGGCTTAGAA
15856486 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
15856512 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15856537 ATCAGAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15857356 original size:158 final size:158
Alignment explanation
Indices: 15856877--15857378 Score: 492
Period size: 160 Copynumber: 3.2 Consensus size: 158
15856867 CCCAGTCTAA
* * * *
15856877 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGG-CCAAGGGTTGCGACAGCAAGAT-AGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCGAGATCA-A
* * * * *
15856939 CAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCCGGCTAAGCG
64 CAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
* * *
15857004 CCCGCACGCCCGTTTCGTGGGTTAGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * * * * * *
15857034 GCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGCCAAACTGAGGGTTGTGGCAACGAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGCGAGATCAAC
* * * * * * *
15857098 AGCACATAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGGGTAGGCTCAGC
65 AGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGGTCGGCTAAGC
* * * *
15857163 GCCCGTACACTCGTTTTGTGGGTTGACTTAT
128 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15857194 GCATATGTAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTGGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCGAGATCAAC
* ** * *
15857258 AGCATGTAGGGGGGAATGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTAAGCGC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * *
15857323 CCGTACGGTTGTTCCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
15857352 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15857379 CATACGGAGT
Statistics
Matches: 266, Mismatches: 70, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
156 5 0.02
157 26 0.10
158 79 0.30
159 67 0.25
160 84 0.32
161 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCGAGATCAACA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15858577 original size:157 final size:156
Alignment explanation
Indices: 15858125--15858623 Score: 479
Period size: 157 Copynumber: 3.2 Consensus size: 156
15858115 CAGTCTAAGT
* * * * * * *
15858125 ATACAGAGTTCATTCCCAGTCTAAGATCGGATC-AGACTGAGGGGTGCGACAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC-GAGGGTTGTGGCAGTAGGATCGACAG
* * * * * *
15858189 CACGCATGAGGGATCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCT
64 CACGCATGGGGGATCGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCC
* * * *
15858253 CGCACGCACATTTTGTGGGTTGGCTTGGGC
127 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * * *
15858283 ATAGGGAGTTCATTCCACA-TCTAA-TTCCCAG-CTGGATCGAGGGTTGTAGCAGTGGGACCGAC
1 ATACGGAGTTCATTCC-CAGTCTAAGAT--CAGAC-CGAACGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
15858345 AGCATGCA-GAGAGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGTCTGGCTCAGC
62 AGCACGCATG-G-GGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGTC-GGCTGAGC
* * *
15858409 ACCGGCACGCTCGTTTCGTGGGTTGACTTAGGC
124 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
15858442 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGTGGTAGTAGGATCGACAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGTGGCAGTAGGATCGACAGCA
** ** *
15858507 CGCATGGGGGATCGGGCTGATCCCTGGCTTGCATATTCTATCTCTCCGATCGGCTGAGCGCCCAC
66 CGCATGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGC
15858572 ACGCTCGTTTCGTGGGTTGGCTTAGGC
130 ACGCTCGTTTCGTGGGTTGGCTTAGGC
*
15858599 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15858624 CATATGGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 94 0.35
158 83 0.31
159 91 0.34
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGTGGCAGTAGGATCGACAGCA
CGCATGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:15858633 original size:26 final size:26
Alignment explanation
Indices: 15858597--15858649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15858587 GTTGGCTTAG
*
15858597 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15858623 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15858649 G
1 G
15858650 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15859341 original size:159 final size:158
Alignment explanation
Indices: 15858947--15859372 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 158
15858937 CTACTGAGTG
* * * * *
15858947 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGATCGGACG
1 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
15859012 GGACCGAGGGTTACGGTAGTAGGATCCGTAGCACGCAAGGGGGACTGAGTTGATCCCCGACATGC
66 GGATCGAGGGTTGCGGTAGCAGGATCCGCAGCACGCAAGGGGGACTGAGTTGATCCCCGACATGC
* * *
15859077 GCATTCTGCCTCTCTAACCAGCTGAGCG
131 GCATTATGCCTCTCTAACCAGCTCAGCA
* * **
15859105 CCCGTACGC-CTGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
1 CCCGTACGCTC-GTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
* * * * * * *
15859167 G-CCGAATCGAAGGTTGTGGTAGCGGGA-CTGGCAGCACGCAGAGGGGGACTGGGTTGATCCTCG
62 GACCGGATCGAGGGTTGCGGTAGCAGGATC-CGCAGCACGCA-AGGGGGACTGAGTTGATCCCCG
* * * *
15859230 GCTTGCGCATTATGCCTCT-TCGACCGGCTCAGCA
125 ACATGCGCATTATGCCTCTCT-AACCAGCTCAGCA
* * **
15859264 CCCGTACGCTCGTTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATT
1 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
15859329 GGATCGAGGGTTGCGATAGCAGGAT-CGATAGCACGCAGGGGGGA
66 GGATCGAGGGTTGCGGTAGCAGGATCCG-CAGCACGCAAGGGGGA
15859373 TCAAACCGTT
Statistics
Matches: 212, Mismatches: 43, Indels: 26
0.75 0.15 0.09
Matches are distributed among these distances:
157 6 0.03
158 82 0.39
159 119 0.56
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGATCGAGGGTTGCGGTAGCAGGATCCGCAGCACGCAAGGGGGACTGAGTTGATCCCCGACATGC
GCATTATGCCTCTCTAACCAGCTCAGCA
Found at i:15859456 original size:158 final size:155
Alignment explanation
Indices: 15858940--15859468 Score: 413
Period size: 158 Copynumber: 3.4 Consensus size: 155
15858930 CTACGGTCTA
* * *
15858940 CTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGA
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *** * * *
15859005 TCGGACGGGACCGAGGGTTACGGTAGTAGGATCCGTAGCACGCAAGGGGGACTGAGTTGATCCCC
66 TCAGACCGGATCGAGGGTTGCGGTAGCAGGAT-CGTAGCACGCAGGGGGGAC--AACCGTTCTCT
* * * *
15859070 GACATGCGCATTCTGCCTCTCTAACCAG
128 GACTTGCGCATTATGCCTCTCCAACCGG
* * *
15859098 CTGAGCGCCCGTACGC-CTGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATT-CCATGTCTA
1 CTGAGCGCCCGCACGCTC-GTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTA
** * * * * * * ***
15859160 AGCCCCAG-CCGAATCGAAGGTTGTGGTAGCGGGACTGGCAGCACGCAGAGGGGGAC-TGGGTTG
63 AG-ATCAGACCGGATCGAGGGTTGCGGTAGCAGGA-TCGTAGCACGCAG-GGGGGACAACCGTT-
* * * *
15859223 ATCCTCGGCTTGCGCATTATGCCTCTTCGACCGG
124 CT-CT-GACTTGCGCATTATGCCTCTCCAACCGG
* * * * *
15859257 CTCAGCACCCGTACGCTCGTTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** *
15859322 TCAGATTGGATCGAGGGTTGCGATAGCAGGATCGATAGCACGCAGGGGGGATCAAACCGTTCTCT
66 TCAGACCGGATCGAGGGTTGCGGTAGCAGGATCG-TAGCACGCAGGGGGGA-C-AACCGTTCTCT
* * *
15859387 GACTTGTGCATTTTACCTCTCCAACCGG
128 GACTTGCGCATTATGCCTCTCCAACCGG
* * * *
15859415 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGA-TTCATTCC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
15859469 ATGTGTAGGC
Statistics
Matches: 284, Mismatches: 70, Indels: 35
0.73 0.18 0.09
Matches are distributed among these distances:
156 2 0.01
157 13 0.05
158 148 0.52
159 112 0.39
160 6 0.02
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (155 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGTAGCACGCAGGGGGGACAACCGTTCTCTGAC
TTGCGCATTATGCCTCTCCAACCGG
Found at i:15866796 original size:20 final size:20
Alignment explanation
Indices: 15866771--15866811 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
15866761 TTAGGCATAC
15866771 GAAGTTTATTCCATGTCTAA
1 GAAGTTTATTCCATGTCTAA
15866791 GAAGTTTATTCCATGTCTAA
1 GAAGTTTATTCCATGTCTAA
15866811 G
1 G
15866812 CTCCGGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (20 bp):
GAAGTTTATTCCATGTCTAA
Found at i:15867444 original size:159 final size:159
Alignment explanation
Indices: 15867030--15867619 Score: 567
Period size: 158 Copynumber: 3.7 Consensus size: 159
15867020 GCAACACGCA
* * * ** * *
15867030 AGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGTGCCCTGCACA
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG-CCTGCACG
*** * * * * * *
15867095 CCCATTTCATGGGTTGGTTTAGTCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCGGGCCAAG
65 CTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
* *
15867160 GGTTGTGGCAGCGAGATCGGCAGCACGTTG
130 GGTTGTGGCAGCGGGATCGGCAGCACGTAG
* * * * * * ** *
15867190 -GGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGTGCCCACATGC
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGC
* * * * *
15867254 CTATTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
66 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
* * *
15867319 GTTGTGGTAGCGGGATCAGCAGCACGCAG
131 GTTGTGGCAGCGGGATCGGCAGCACGTAG
* * * * * * * * *
15867348 AGGGGGATCGAGCCGATCCCCCGTTTGCGCATTATGCCTCTTTGGCCGGCTCAGCACTTGCACGC
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGC
* * * ** * *
15867413 TTGTTTCATGGGTTGACTTATGCATACGGAGTTCACTCCCA-GTCTAAG-ATCGGACCAGACCGA
66 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-CCGGACCGA
** *
15867476 GGGTTACGGCAGCAGGATCGGCAGCACGTA-
129 GGGTTGTGGCAGCGGGATCGGCAGCACGTAG
* * **
15867506 AGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCTGCACGC
1 AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGC
* * * *
15867571 TCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
66 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15867620 ATATGGAGTT
Statistics
Matches: 346, Mismatches: 79, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.01
158 177 0.51
159 161 0.47
160 4 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGC
TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCGGGATCGGCAGCACGTAG
Found at i:15867628 original size:26 final size:26
Alignment explanation
Indices: 15867592--15867644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15867582 GTTGGCTTAG
15867592 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15867618 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15867644 G
1 G
15867645 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15872241 original size:26 final size:26
Alignment explanation
Indices: 15872192--15872244 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15872182 GTTGGCTTAG
*
15872192 GCATACGAAGTTCATTCGATGTCTAA
1 GCATACGAAGTTCATTCGAAGTCTAA
*
15872218 GCATACGGAGTTCATTC-ACAGTCTAA
1 GCATACGAAGTTCATTCGA-AGTCTAA
15872244 G
1 G
15872245 AGNNNNNNNN
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGAAGTCTAA
Found at i:15873727 original size:26 final size:26
Alignment explanation
Indices: 15873691--15873743 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15873681 GTTAGCTTAG
15873691 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15873717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15873743 G
1 G
15873744 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15875333 original size:26 final size:26
Alignment explanation
Indices: 15875283--15875335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15875273 GTTGAATTAG
*
15875283 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15875309 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15875335 G
1 G
15875336 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15875811 original size:26 final size:26
Alignment explanation
Indices: 15875781--15875831 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15875771 GTTGGCTTAG
15875781 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
**
15875807 GCATATGGAGTTCATTTCCAGTCTA
1 GCATACAGAGTTCATTTCCAGTCTA
15875832 GAGATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15876717 original size:26 final size:26
Alignment explanation
Indices: 15876667--15876719 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15876657 GTTGAATTAG
*
15876667 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15876693 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15876719 G
1 G
15876720 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15877195 original size:26 final size:25
Alignment explanation
Indices: 15877165--15877216 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15877155 GTTGGCTTAG
*
15877165 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATT-CAAGTCTAA
**
15877191 GCATATGGAGTTCATTCAAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
15877216 G
1 G
15877217 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:15877441 original size:21 final size:21
Alignment explanation
Indices: 15877415--15877468 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
15877405 TTGTGGCGGT
15877415 GGGATCGACAGCACACAGAGG
1 GGGATCGACAGCACACAGAGG
* * **
15877436 GGGATCGGCAACATGCAGAGG
1 GGGATCGACAGCACACAGAGG
15877457 GGGATCGGACAG
1 GGGATC-GACAG
15877469 ATCCCCGGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.30, C:0.20, G:0.43, T:0.07
Consensus pattern (21 bp):
GGGATCGACAGCACACAGAGG
Found at i:15877750 original size:26 final size:26
Alignment explanation
Indices: 15877693--15877750 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
15877683 CGTGGGTTGG
15877693 CTAAGGCATACGGAGTTCATTCCATGT
1 CTAA-GCATACGGAGTTCATTCCATGT
*
15877720 TTAAGCATACGGAGTTCATTCC-TCGT
1 CTAAGCATACGGAGTTCATTCCAT-GT
15877746 CTAAG
1 CTAAG
15877751 ATCGAACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 24 0.86
27 3 0.11
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCATGT
Found at i:15877925 original size:26 final size:26
Alignment explanation
Indices: 15877895--15877947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15877885 GTTGACTTAG
*
15877895 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
* *
15877921 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
15877947 G
1 G
15877948 ATCACACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCACTCTAA
Found at i:15878291 original size:159 final size:157
Alignment explanation
Indices: 15877921--15878311 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 157
15877911 CCCAGTCTAA
* * * *
15877921 GCATACGGAGTTCATTCCCACTCTAAGATCACACAGGACTGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACTGAGGGTTGCGGCAGCAGGACCGATA
* * * * * * * *
15877986 GCATGCAGGCAGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTAACAGGTTGAGTGCC
65 GCACGCAGGCAGGACCGGGTCAATCCCTGGCTTACGCATTATACCTCTCGAACAGGCTCAGTGCC
* ** *
15878051 CGTATGCCCGTTTTGTGGGTTGGCTTAG
130 CGAATGCCCGTTTCATGGGTTGACTTAG
* * ** * * * *
15878079 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACT-GAGGGTTGCGGCAGCAGGACCGA
* ** * *
15878142 TAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTACGCATTATGCCTCTCCGATCA-GCTCAG
63 TAGCACGCAG-GCAGGACCGGGTCAATCCCTGGCTTACGCATTATACCTCT-CGAACAGGCTCAG
*
15878206 TGCCCGAATGCTCGTTTCATGGGTTGACTTAG
126 TGCCCGAATGCCCGTTTCATGGGTTGACTTAG
* * * **
15878238 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAGGGTTGCGGCAGCAGGACCGATA
15878303 GCACGCAGG
65 GCACGCAGG
15878312 GGGGCATACG
Statistics
Matches: 181, Mismatches: 44, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 53 0.29
159 116 0.64
160 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACTGAGGGTTGCGGCAGCAGGACCGATAG
CACGCAGGCAGGACCGGGTCAATCCCTGGCTTACGCATTATACCTCTCGAACAGGCTCAGTGCCC
GAATGCCCGTTTCATGGGTTGACTTAG
Found at i:15878351 original size:26 final size:26
Alignment explanation
Indices: 15878315--15878367 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15878305 ACGCAGGGGG
* *
15878315 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15878341 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15878367 G
1 G
15878368 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15878673 original size:419 final size:420
Alignment explanation
Indices: 15877894--15878683 Score: 1038
Period size: 419 Copynumber: 1.9 Consensus size: 420
15877884 GGTTGACTTA
*
15877894 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCACACAGGA
1 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCACACAGGA
* * * * * ** *
15877959 CTGAGGGTTGCGACAGCAGGATCGATAGCATGCAGGCAGGATCGGGTCGATCCCTGGCTTGCGCA
66 CTGACGATTGCGACAGCAAGATCGACAACACACAGGCAGGATCGGGTCGATCCCCGGCTTGCGCA
* ** ** **
15878024 TTCTACCTCTCTAACAGGTTGAGTGCCCGTATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAG
131 TTCTACCTCTCCAACAGGTTGAGCACCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
* * * * *
15878089 CTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAG
196 CTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCGACAGCACGCAGAG
* * ** ** *
15878154 GGGGACCGGGTCAATCCCTGGCTTACGCATTATGCCTCTCCGATCAGCTCAGTGCCCGAATGCTC
261 GGGGACCAGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCTCAACGCCCGAACGCTC
*
15878219 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGG
326 CTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGG
15878283 TTACGGCAGTAGGATCGGCAGCACGCAGGGG
390 TTACGGCAGTAGGATCGGCAGCACGCAGGGG
* * *
15878314 GGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGA-ACCGG
1 GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-ACACAGG
* * *
15878378 A-TCGACGATTGTGGCAGCAAGATCGACAACACACAAGG-GGGATCGGGTCGATCCCCGGCTTGC
65 ACT-GACGATTGCGACAGCAAGATCGACAACACAC-AGGCAGGATCGGGTCGATCCCCGGCTTGC
*
15878441 GCATTCTGCCTCTCCAATCA-GTTGAGCACCCGTACACCCGTTTCAT-GGTTGGCTTAGGCATAG
128 GCATTCTACCTCTCCAA-CAGGTTGAGCACCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAG
* ** * *
15878504 GGAGTTCATTCCATGTATAAGCCTTAGCCAGACCGAGGGTAGTGGCTGTGGGACCGACAGCACGC
192 GGAGCTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCGACAGCACGC
* * * * *
15878569 AGAGGGGGACCAGGCCGATCCCCAGCTTGA-GCATTCTGCCTCTCC-AGTCGGCTGAACGCCCGC
257 AGAGGGGGACCAGGCCAATCCCCAGCTT-ACGCATTATGCCTCTCCGA-TCAGCTCAACGCCCGA
*
15878632 ACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
320 ACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
15878684 CATACAGAGT
Statistics
Matches: 316, Mismatches: 47, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
418 4 0.01
419 166 0.53
420 140 0.44
421 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (420 bp):
GGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCACACAGGA
CTGACGATTGCGACAGCAAGATCGACAACACACAGGCAGGATCGGGTCGATCCCCGGCTTGCGCA
TTCTACCTCTCCAACAGGTTGAGCACCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
CTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCGACAGCACGCAGAG
GGGGACCAGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCTCAACGCCCGAACGCTC
CTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGT
TACGGCAGTAGGATCGGCAGCACGCAGGGG
Found at i:15884215 original size:159 final size:155
Alignment explanation
Indices: 15883996--15884408 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 155
15883986 CGGACTGATC
* * * * * **
15883996 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCTGCAGAGTGCCTGCACGCCCATTTTGTGGGTTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCC-GAACGCTCGTTTCATGGGTTGGC
*
15884061 TTAGGCATA-GGTAGTTCATTCCATGTCTAAGACCTAG-CCGGACCGAGGGTT-GTAGCAACGAG
65 TTAGGCATACGG-AGTTCATTCCATGTCTAAGACC-AGACCGGACCAAGGGTTAGTAG-AA-G-G
* * * *
15884123 ACCGGCAGCACGTCGAGGGG-GATCGGGTCGAT
125 ACCGACAGCACGT--AGGGGAGACCGAGCCGAT
* * * *
15884155 CCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGTGCTCGAACGCTCGTTTCATGGGTTGAC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGC-CGAACGCTCGTTTCATGGGTTGGC
* * * *
15884220 TTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCAAGGGTTACGGTAGAAGGAT
65 TTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCAAGGGTTA--GTAGAAGGAC
*
15884284 TGACAGCACGTAGGGGAGACCGAGCCGAT
127 CGACAGCACGTAGGGGAGACCGAGCCGAT
* * * ** * * * *
15884313 CCCCGGCTTACGTATTCTACCTCTCCGATCGGCTGAGCGCCCGTACACTCGTTTCATGGGTTGGC
1 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTG-CCGAACGCTCGTTTCATGGGTTGGC
15884378 TTAGGCATACGGAGTTCATTCCATGTCTAAG
65 TTAGGCATACGGAGTTCATTCCATGTCTAAG
15884409 CATAGGGAGT
Statistics
Matches: 210, Mismatches: 34, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
157 8 0.04
158 88 0.42
159 101 0.48
160 7 0.03
161 2 0.01
162 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (155 bp):
CCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCGAACGCTCGTTTCATGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCAAGGGTTAGTAGAAGGACCGAC
AGCACGTAGGGGAGACCGAGCCGAT
Found at i:15884412 original size:26 final size:26
Alignment explanation
Indices: 15884382--15884434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15884372 GTTGGCTTAG
15884382 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15884408 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15884434 G
1 G
15884435 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15884642 original size:25 final size:26
Alignment explanation
Indices: 15884591--15884642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15884581 GTTGACTTAG
*
15884591 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
15884617 GCATACAAAGTTCAT-TCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15884642 G
1 G
15884643 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15884797 original size:183 final size:184
Alignment explanation
Indices: 15884568--15884972 Score: 510
Period size: 184 Copynumber: 2.2 Consensus size: 184
15884558 ATGCTCGCAC
* *
15884568 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
1 GCTCGTTTTATGGGTTGACTTAGGCAGACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
* * *
15884633 -CCAGTCTAAGATTGAACCGGACTGAGGGTTGCGGCAGTAGGAT-AGGCAGCACGCAGGGGGGAC
66 CCCAATCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCA-GCAGCACGCAGGGGGGAC
** * *
15884696 AGGG-CTGATCCGTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCTGCAA
130 AGGGTC-GATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCTGCAA
** * *
15884751 GCTCGTTTTATGGGTTGACTTAGTTAGATAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTTATGGGTTGACTTAGGCAGACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
* * * * *
15884816 CCCAATCTAAGATCGAACTGGACTGAGGGTTGTGGCAGCAGGATCAGTAGCACGGAGGGGGGACT
66 CCCAATCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACA
* * * * * *
15884881 GGGTCGATCCCCGGCTTACGCATTCTACCTTTCTGGCCGGTTGAGCGTCTGCAC
131 GGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCTGCAA
* * * * *
15884935 GCCCATTTTATGGGTTGGCTTAGGCATAGAGAGTTCAT
1 GCTCGTTTTATGGGTTGACTTAGGCAGACAGAGTTCAT
15884973 TCCATGTCTA
Statistics
Matches: 188, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 59 0.31
184 127 0.68
185 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (184 bp):
GCTCGTTTTATGGGTTGACTTAGGCAGACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
CCCAATCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACA
GGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCTGCAA
Found at i:15885313 original size:26 final size:26
Alignment explanation
Indices: 15885274--15885326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15885264 GTTGGCTTAG
*
15885274 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
15885300 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15885326 G
1 G
15885327 ATCAGACTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15885671 original size:26 final size:26
Alignment explanation
Indices: 15885642--15885692 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15885632 TTGATTAGGT
15885642 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
15885668 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
15885693 AGCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:15886797 original size:26 final size:25
Alignment explanation
Indices: 15886746--15886823 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 25
15886736 GTTGACTTAG
*
15886746 GCATACGGAGTTCATCCCAGTTTAA
1 GCATACGGAGTTCATCCCAGTCTAA
15886771 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
15886797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
15886823 G
1 G
15886824 ATATGATCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
25 15 0.30
26 34 0.68
27 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:15887364 original size:26 final size:26
Alignment explanation
Indices: 15887335--15887387 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15887325 GTTGACTTAG
* *
15887335 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAATCTAA
* *
15887361 GCATATGGAGTCCATTCCCAATCTAA
1 GCATACGGAGTCCATCCCCAATCTAA
15887387 G
1 G
15887388 ATTGGATAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAATCTAA
Found at i:15887608 original size:157 final size:156
Alignment explanation
Indices: 15887411--15887731 Score: 360
Period size: 157 Copynumber: 2.0 Consensus size: 156
15887401 GAAGCTTGCA
* * * **
15887411 GCAGCAGGATCGACAGCATGCATGGGGACCGGGCCGAT-CCCTGACTTGTGCATTCTGCCTCTCC
1 GCAGCA-GACCGACAGCATGCAGGGGGACCGGGCCGATCCCCAG-CTTACGCATTCTGCCTCTCC
* ** * * * * ** *
15887475 -AGTCGGTTGAGCGCCCGCATGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CATG
64 GA-CCGACTGACCACCCGCACGCCCATTTAGTGGGTTGGCTTAGGCATACAGACTTCATTCCATG
** * *
15887538 TCTAAGCCCCAGTTGGACCGATGGTTGTG
128 TCTAAGCCCCAGCCGGACCAAGGGTTGTG
* *
15887567 GCAGCAGACCGACAGCATGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTTTGCCTCTCC
1 GCAGCAGACCGACAGCATGC--AGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCC
* * *
15887632 GACCGACTGACCATCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGACTTCATTCCATGT
64 GACCGACTGACCACCCGCACGCCCATTTAGTGGGTTGGCTTAGGCATACAGACTTCATTCCATGT
15887697 CTAAGCCCCAGCCGGACCAAGGGTTGTG
129 CTAAGCCCCAGCCGGACCAAGGGTTGTG
15887725 GCAGCAG
1 GCAGCAG
15887732 GACTAGCAGT
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
155 13 0.10
156 6 0.04
157 76 0.56
158 41 0.30
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (156 bp):
GCAGCAGACCGACAGCATGCAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGA
CCGACTGACCACCCGCACGCCCATTTAGTGGGTTGGCTTAGGCATACAGACTTCATTCCATGTCT
AAGCCCCAGCCGGACCAAGGGTTGTG
Found at i:15888330 original size:26 final size:26
Alignment explanation
Indices: 15888300--15888352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15888290 GTTGGCTTAG
15888300 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15888326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15888352 G
1 G
15888353 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15888545 original size:26 final size:26
Alignment explanation
Indices: 15888509--15888561 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15888499 GTTGACTTAG
15888509 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15888535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15888561 G
1 G
15888562 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15889036 original size:159 final size:159
Alignment explanation
Indices: 15888657--15889037 Score: 363
Period size: 159 Copynumber: 2.4 Consensus size: 159
15888647 TCCGACCGGT
* * *
15888657 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT-TAAGCC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * *** * * *
15888721 CCAGCCGGACCGAGGGTTGTGGTAGTGGGATCGATAGTACGCAGAGGGGGTCTGGGCCAATCCTC
66 CCAGCCGGACCGAGGGTTGCGATAGCAAGATCGATAGCACGCAGAGGGGGTCTGAGCCAATCCCC
* * * *
15888786 GGCTTGCGCATTATGCCTCTCCAGCCGGC
131 GACTTACACATTATGCCTCTCCAGCCGAC
* * * * * ** * * ** *
15888815 TCAGTGCCCGAACGCTCATTTTATGGGTTAACTAAGGCATACGGAGTTCATTCCCTAACTAAG-A
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * * * *
15888879 TCGGATCGGACCGAGGGTTGCGATAGCAAGATCGATAGCACGTAGGGGGGGATC-GAGTCAGTCC
66 CCAG-CCGGACCGAGGGTTGCGATAGCAAGATCGATAGCACGCAGAGGGGG-TCTGAGCCAATCC
* * *
15888943 CCGACTTACACATTCTGCCTCTCCGGTCGAC
129 CCGACTTACACATTATGCCTCTCCAGCCGAC
* * *
15888974 TGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15889038 ATACAGAGTT
Statistics
Matches: 168, Mismatches: 51, Indels: 6
0.75 0.23 0.03
Matches are distributed among these distances:
158 46 0.27
159 120 0.71
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGGGTTGCGATAGCAAGATCGATAGCACGCAGAGGGGGTCTGAGCCAATCCCC
GACTTACACATTATGCCTCTCCAGCCGAC
Found at i:15889046 original size:26 final size:26
Alignment explanation
Indices: 15889010--15889062 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15889000 GTTGGCTTAG
*
15889010 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15889036 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15889062 G
1 G
15889063 ATTTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15889516 original size:159 final size:159
Alignment explanation
Indices: 15889166--15889562 Score: 448
Period size: 159 Copynumber: 2.5 Consensus size: 159
15889156 CCTCTCTGGC
* * * * *
15889166 CTGCCTCTTCGGCTGGCTAAGCACCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTT
1 CTGCCTCTCCGGCTGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * * * * *
15889231 CATTACATGTCT-A-ACCCTAGTCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGTAGAGG
66 CATTCCATGTCTAAGACCCGAGTCAGACCGAGGGTTGCGGCAGCAGGACTGACAACACGTAGAGG
15889294 GGATCGGGCAGATCCCCGACATGTGCATT
131 GGATCGGGCAGATCCCCGACATGTGCATT
* * * * * * * *
15889323 ATGCATGTCCGACTAGCTCAA-CGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
1 CTGCCTCTCCGGCTGGCT-AAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
15889387 TCATTTCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTGCGGCAGCAGGA-TCGACAACACGTAG
65 TCA-TTCCATGTCTAAGACCCGAGTCAGACCGAGGGTTGCGGCAGCAGGACT-GACAACACGTAG
* * * *
15889449 AGGGGGATTGGGTTAG-TCCCCGGCTTGTGCATT
128 A-GGGGATCGGG-CAGATCCCCGACATGTGCATT
* * *
15889482 CTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTT
1 CTGCCTCTCCGGCTGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
15889547 CATTCCATGTCTAAGA
66 CATTCCATGTCTAAGA
15889563 ATACGGAGTT
Statistics
Matches: 195, Mismatches: 36, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 56 0.29
158 48 0.25
159 89 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTGCCTCTCCGGCTGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGACCCGAGTCAGACCGAGGGTTGCGGCAGCAGGACTGACAACACGTAGAGG
GGATCGGGCAGATCCCCGACATGTGCATT
Found at i:15889567 original size:26 final size:26
Alignment explanation
Indices: 15889537--15889588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15889527 TGGCTTAGGC
15889537 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
*
15889563 ATACGGAGTTCGTTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15889589 TCAGACCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15889632 original size:525 final size:526
Alignment explanation
Indices: 15888663--15889677 Score: 1308
Period size: 525 Copynumber: 1.9 Consensus size: 526
15888653 CGGTTGAGCG
* *
15888663 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTAAGCCCCAGCCG
1 CCCGCACGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTTAAGCCCCAGCCG
* * * * * * * *
15888728 GACCGAGGGTTGTGGTAGTGGGATCGATAGTACGCAGAGGGGGTCTGGGCCAATCCTCGGCTTGC
66 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGATCTGGGCCAATCCCCGACATGC
* * ** * *
15888793 GCATTATGCCTCTCCAGCCGGCTCAGTGCCCGAACGCTCATTTTATGGGTTAACTAAGGCATACG
131 GCATTATGCATCTCCAGCCAGCTCAACGCCCGAACGCTCATTTCATGGGTTAACTAAGGCATACA
* * * *
15888858 GAGTTCATTCCCTAACTAAGATCGGATCGGACCGAGGGTTGCGATAGCAAGATCGATAGCACGTA
196 GAGTTCATTCCCTAACTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTA
*
15888923 GGGGGGGATCGAGTCAGTCCCCGACTTACACATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
261 GAGGGGGATCGAGTCAGTCCCCGACTTACACATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
* * *
15888988 CTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTC
326 CTCATTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATACAGAGTTCATTC
** * ** * * **
15889053 CCAGTCTAAGATTTGATCGGACCGAGAGTTGTGGCAACAGGACCAGCAGCAGGATTGGTAGCAAG
391 CCAGTCTAAGATCAGACCGGACCGAGAGTTACGACAACAGGACCAGCAGCAGGATCGACAGCAAG
*
15889118 CAGGGGGGA-CGCAACTGATCCCCGACTTGCGCATTCTACCTCTCTGGCCTGCCTCTTCGGCTGG
456 CAGGGGGGATCG-AACCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCTGCCTCTTCGGCTGG
15889182 CTAAGCA
520 CTAAGCA
* * *
15889189 CCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAA-CCCTAGTC
1 CCCGCACGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGT-TAAGCCCCAGCC
*
15889253 GGACCGAGGGTTGTGGCAGCGGGA-CTGACAGCACGTAGAGGGGATC-GGG-CAGATCCCCGACA
65 GGACCGAGGGTTGTGGCAGCGGGATC-GACAGCACGCAGAGGGGATCTGGGCCA-ATCCCCGACA
* * * * * *
15889315 TGTGCATTATGCATGTCC-GACTAGCTCAACGCCC-ACACGCTCATTTCGTGGGTTGACTTAGGC
128 TGCGCATTATGCATCTCCAG-CCAGCTCAACGCCCGA-ACGCTCATTTCATGGGTTAACTAAGGC
* * * *
15889378 ATACAGAGTTCATTTCC-AGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAA
191 ATACAGAGTTCATTCCCTA-ACTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGATCGACAA
* * * * *** * *
15889442 CACGTAGAGGGGGATTGGGTTAGTCCCCGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
255 CACGTAGAGGGGGATCGAGTCAGTCCCCGACTTACACATTCTGCCTCTCCGGTCGACTGAGCGCC
* * *
15889507 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGAGT
320 CGCACGCTCATTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATACAGAGT
* * *
15889572 TCGTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGAC
385 TCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTACGACAACAGGACCAGCAGCAGGATCGAC
* * * *
15889637 AGCACGTAGGGGGGATCGACCCGATCCCCGGCTTGCGCATT
450 AGCAAGCAGGGGGGATCGAACCGATCCCCGACTTGCGCATT
15889678 TTGCCTCCCC
Statistics
Matches: 415, Mismatches: 67, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
524 5 0.01
525 312 0.75
526 95 0.23
527 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (526 bp):
CCCGCACGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGATCTGGGCCAATCCCCGACATGC
GCATTATGCATCTCCAGCCAGCTCAACGCCCGAACGCTCATTTCATGGGTTAACTAAGGCATACA
GAGTTCATTCCCTAACTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTA
GAGGGGGATCGAGTCAGTCCCCGACTTACACATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
CTCATTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGAATACAGAGTTCATTC
CCAGTCTAAGATCAGACCGGACCGAGAGTTACGACAACAGGACCAGCAGCAGGATCGACAGCAAG
CAGGGGGGATCGAACCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCTGCCTCTTCGGCTGGC
TAAGCA
Found at i:15891049 original size:158 final size:155
Alignment explanation
Indices: 15890579--15891075 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 155
15890569 CCCAGTCTAA
* * * * *
15890579 GCATACGGAGTTCATTCCCTATCTAAGATCAGACTGGACCGATGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * **
15890644 GCACGCAAGGGGGACCAGGTCGATCCCCGGCTTACGTATTCTGCCTCTCCGGTCAGCT-G-CCCG
66 GCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTACGTATTCTGCCTCTCCGGTTGGCTAGCCCCG
* *
15890707 CACGCCCATTTCGTGGGTTGGCTTAG
130 CACGCTCATTTCATGGGTTGGCTTAG
* ** * * * * * * *
15890733 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGTGTTGTGGCAGTCGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGAC
** * * * * * *
15890797 AGCATACAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCC-CGGCTTACGTATTCTGCCTCTCCGGTTGGCT-AGC-
* * *
15890862 CCCGAATGCTCATTTCATGGGTTGACTTAG
126 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* **
15890892 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACTAGACCGAGGGTTGCATTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * *
15890956 AGCACGCAGGGGGGATCGGGCCGGTCCCAGGTTTATGTATTCTGCCTCTCCGGTTGGTTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCC-GGCTTACGTATTCTGCCTCTCCGGTTGGCT-AGC-C
* *
15891021 CCGCACACTCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
*
15891050 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15891076 CCATACGGAG
Statistics
Matches: 265, Mismatches: 67, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
154 53 0.20
155 40 0.15
157 2 0.01
158 92 0.35
159 78 0.29
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCGGCTTACGTATTCTGCCTCTCCGGTTGGCTAGCCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:15891085 original size:26 final size:26
Alignment explanation
Indices: 15891051--15891101 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15891041 TTGGCTTAGG
15891051 CATAAGGAGTTCATTCC-ATGTCTAAC
1 CATAAGGAGTTCATTCCGA-GTCTAAC
*
15891077 CATACGGAGTTCATTCCGAGTCTAA
1 CATAAGGAGTTCATTCCGAGTCTAA
15891102 GATCAAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCGAGTCTAAC
Found at i:15891297 original size:25 final size:26
Alignment explanation
Indices: 15891247--15891298 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15891237 GTTGACTTAG
15891247 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15891273 GCATACGGAGTTCAT-CCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15891298 G
1 G
15891299 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15891301 original size:196 final size:187
Alignment explanation
Indices: 15890892--15891456 Score: 599
Period size: 196 Copynumber: 3.0 Consensus size: 187
15890882 GTTGACTTAG
* * ** * **
15890892 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTT--G-CATTAGTAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAGTAGGATCG
* * * * * * * * * *
15890954 ACAGCACGCAGGGGGGATCGGGCCGGTCCCAGGTTTATGTATTCTGCCTCTCCGGTTGGTTGAGC
66 ACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGC
* *
15891019 ACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
131 ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* *
15891076 CCATACGGAGTTCATTCCGAGTCTAAGATCAAACCGGACCAAGGGTTGTGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAA-GG--GT--T-GC--GA-CAGCA
* *
15891141 GTAGGATCGATAGCAAGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGT
57 GTAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGT
* * * * * * *
15891206 CCGGCTGAGCGCCCGTACGCTTGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
122 -TGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTC
15891270 TAA
185 TAA
* * * *
15891273 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGC---AGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAGTAGGATCG
* * * **
15891334 ACAGCACGTA-GGGGGACCGAGCTGATCCTCAGCTTGTGCATTCTACCTCTCCAATTGGCTGAGC
66 ACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGC
* *
15891398 ACCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
15891455 GC
1 GC
15891457 CCCAGTTGGA
Statistics
Matches: 316, Mismatches: 50, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
181 3 0.01
182 56 0.18
183 40 0.13
184 51 0.16
185 2 0.01
187 5 0.02
188 2 0.01
189 1 0.00
190 2 0.01
191 1 0.00
193 2 0.01
194 1 0.00
195 2 0.01
196 80 0.25
197 65 0.21
198 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (187 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAGTAGGATCG
ACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTTGGCTGAGC
ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
Found at i:15891582 original size:159 final size:157
Alignment explanation
Indices: 15891328--15891615 Score: 407
Period size: 159 Copynumber: 1.8 Consensus size: 157
15891318 TGCGATAGCA
* * * *
15891328 GGATCGACAGCACGTAGGGGGACCGAGCTGATCCTCAGCTTGTGCATTCTACCTCTCCAATTGGC
1 GGATCGACAGCACGAAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTACCTCTCCAATTGAC
* * *
15891393 TGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACGCCTATTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
15891458 CCAGTTGGACCAAGGGTTGTGGTATTG
131 CCAGTTGGACCAAGGGTTGTGGTATTG
* * * ***
15891485 GGATCGACAGCACGAAAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGCTTG
1 GGATCGACAGCACG--AAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTACCTCTCCAATTG
* *
15891550 ACTGAGCGCCCGCACG-CTCATTTCATGAGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
64 ACTGAGCACCCGCACGCCT-ATTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAA
15891614 GC
128 GC
15891616 TTACGGAGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
157 14 0.12
158 2 0.02
159 97 0.86
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
GGATCGACAGCACGAAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTCTACCTCTCCAATTGAC
TGAGCACCCGCACGCCTATTTCATGAGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
CCAGTTGGACCAAGGGTTGTGGTATTG
Found at i:15891726 original size:11 final size:11
Alignment explanation
Indices: 15891710--15891742 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15891700 CCTGGGGTAC
15891710 CATCATCGGAG
1 CATCATCGGAG
*
15891721 CATCATTGGAG
1 CATCATCGGAG
15891732 CATCATCGGAG
1 CATCATCGGAG
15891743 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:15892202 original size:26 final size:26
Alignment explanation
Indices: 15892166--15892218 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15892156 GTTGGCTTAG
15892166 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
15892192 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
15892218 G
1 G
15892219 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:15893072 original size:26 final size:26
Alignment explanation
Indices: 15893036--15893087 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15893026 GTTGGCTTAG
15893036 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
15893062 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15893088 AGATCTGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15894353 original size:26 final size:26
Alignment explanation
Indices: 15894316--15894368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15894306 GTTGACTTAG
*
15894316 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
15894342 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15894368 G
1 G
15894369 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15900668 original size:105 final size:106
Alignment explanation
Indices: 15900464--15900668 Score: 245
Period size: 105 Copynumber: 1.9 Consensus size: 106
15900454 GGGATCGGGC
* *
15900464 CAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTAAGCACCCGCACGCTCATTTCATGGGT
1 CAATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACTAAGCACCCGCACGCCCATTTCATGGGT
*
15900529 TGGCTAAGCCATACGAAGTTCATTCCCAGTCTAAGATCGGT
66 TGGCTAAGCCATACGAAGCTCATTCCCAGTCTAAGATCGGT
* * ** * * *
15900570 CAATCCCC-GACTTGCGCATTCTGCCTCTCCGACCTACTAAG-TGCTGCACGCCCGTTTCATGGT
1 CAATCCCCAG-CTTGCACATTCTGCCTCTCCGACCGACTAAGCACCCGCACGCCCATTTCATGGG
* * * *
15900633 TTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAG
65 TTGGCTAAGCCATACGAAGCTCATTCCCA-GTCTAAG
15900669 GCCCAGTCGG
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
104 3 0.04
105 44 0.53
106 36 0.43
ACGTcount: A:0.20, C:0.33, G:0.21, T:0.26
Consensus pattern (106 bp):
CAATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACTAAGCACCCGCACGCCCATTTCATGGGT
TGGCTAAGCCATACGAAGCTCATTCCCAGTCTAAGATCGGT
Found at i:15900996 original size:26 final size:26
Alignment explanation
Indices: 15900960--15901012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15900950 GTTGGCTTAG
*
15900960 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15900986 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15901012 G
1 G
15901013 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15901707 original size:26 final size:26
Alignment explanation
Indices: 15901671--15901723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15901661 TTTGACTTAG
*
15901671 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
*
15901697 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
15901723 G
1 G
15901724 ATCAGGCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:15901742 original size:196 final size:196
Alignment explanation
Indices: 15901379--15901744 Score: 484
Period size: 196 Copynumber: 1.9 Consensus size: 196
15901369 GCAAGATCGA
** *
15901379 CAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTTTTCGGCCGACTGAGC
1 CAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCGGCCGACTGAGC
* * * * *
15901444 GCCCGCACGCTCGTTTCGTGGGTCGGCTTATCCATACGAAGTTCATTCCATGTCTAAGAATATGA
66 GCCCGCACGCTCGTTTCATGGGTCGACTTAGCCATACGAAGTTCATCCCATGTCTAAGAATACGA
* * * *
15901509 AGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGTAGTAGCAGGACTAGCAGCAGGACG
131 AGTGCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTAGTAGCAGGACTAGCAGCAGGACG
15901574 G
196 G
* * *
15901575 CAGCACGCAG-GGAGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCCCTCCGGTCGACTGAG
1 CAGCACACAGAGG-GGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCGGCCGACTGAG
* * * * * * *
15901639 TGCCCGCACGCTCGTTTTATGGTTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC
65 CGCCCGCACGCTCGTTTCATGGGTCGACTTAGCCATACGAAGTTCAT-CCCATGTCTAAGAATAC
* *
15901703 GGAGTGCATTCCCAGTCTAAGATCAGGCCAAACCGAGGGTTG
129 GAAGTGCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTG
15901745 CGACAGTAGG
Statistics
Matches: 144, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 139 0.97
197 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
CAGCACACAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCCGGCCGACTGAGC
GCCCGCACGCTCGTTTCATGGGTCGACTTAGCCATACGAAGTTCATCCCATGTCTAAGAATACGA
AGTGCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTAGTAGCAGGACTAGCAGCAGGACG
G
Found at i:15902197 original size:158 final size:158
Alignment explanation
Indices: 15901697--15902200 Score: 405
Period size: 158 Copynumber: 3.2 Consensus size: 158
15901687 CCCAGTCTAA
* * * *
15901697 GCATACGGAGTGCATTCCCA-GTCTAAG-ATCAGGCCAAACCGAGGGTTGC-GACAGTAGGAT-T
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCA-GCCGAACCGA-GGTTGCAG-CAGCAGGATCA
* ** ** * * * * *
15901758 GACAGCACGCAG-GTAGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGA
62 G-TAGCACGCAGAGGGGGATCGAACGGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTGA
* * *
15901822 GCGCCTGCACGCCCGTTTCATGGGTTAGCTTAG
126 GCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** **
15901855 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCTGAACCGAGGTTGTGGCAGTGGGATCAGTAG
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGCCGAACCGAGGTTGCAGCAGCAGGATCAGTAG
* * * ** * * * * * *
15901920 CATGTAGATGGGGATCGGGCGGATCCCCAGCTTGGGCATTATGCCTATTCTGCCGGCTCAGCGCC
66 CACGCAGAGGGGGATCGAACGGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
* * * *
15901985 TGCACACTCATTTCGTGGGTTGACTTAT
131 TGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15902013 GCGTACGGAGTTCATTCCCA-GCCTAAG-ATCGGACCGGACGGAAGGTTGCAGCAGCAGGATC-G
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAG-CCGAACCG-AGGTTGCAGCAGCAGGATCAG
* * * *
15902075 ATAGCACGCAGGGGGGGATTGAACTGATCCCCTGCTTGCGCA-TCTGCCTCTCCAGCCGGCTGAG
63 -TAGCACGCAGAGGGGGATCGAACGGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAG
* *
15902139 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15902171 GCATACAGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
15902201 ACGGAGTTCA
Statistics
Matches: 268, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 29 0.11
158 185 0.69
159 54 0.20
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGCCGAACCGAGGTTGCAGCAGCAGGATCAGTAG
CACGCAGAGGGGGATCGAACGGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
TGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15902220 original size:26 final size:26
Alignment explanation
Indices: 15902171--15902223 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15902161 GTTGGCTTAG
* *
15902171 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCACTCCACGTCTAA
* *
15902197 GCATACGGAGTTCACTCCCCGTCTAA
1 GCATACAGAGTTCACTCCACGTCTAA
15902223 G
1 G
15902224 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCACGTCTAA
Found at i:15902940 original size:159 final size:158
Alignment explanation
Indices: 15902551--15902968 Score: 466
Period size: 158 Copynumber: 2.6 Consensus size: 158
15902541 ATTCAAAGGC
* * * * *
15902551 CGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGACTGAGCACCCGTACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
* * * * * *
15902616 TGGCTTAGGTAGAGGGAGCTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAG
15902681 GACCGACAGCACCAGAGGGGGACCGAGT
131 GACCGACAGCACCAGAGGGGGACCGAGT
* * * * * * *
15902709 CGATCCCTGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
* * * ** * *
15902774 TGACTTAGGCATATGGATTTCATTCCCA-GTCTAAG-ATCGGACCAGACTGAGGGTTGTGGCAGC
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC
** * ** *
15902837 AGGATTGACAGCACGTAG-GGAGGGATTGGGT
129 AGGACCGACAGCAC-CAGAGG-GGGACCGAGT
* *
15902868 CGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACTGGCTGAGCGCTCGTACGCTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGTACGCTCGTTTCATGGG
15902932 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15902969 ATACGGAGTT
Statistics
Matches: 211, Mismatches: 42, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 116 0.55
159 93 0.44
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAG
GACCGACAGCACCAGAGGGGGACCGAGT
Found at i:15902971 original size:26 final size:26
Alignment explanation
Indices: 15902941--15902993 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15902931 GTTGGCTTAG
15902941 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15902967 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15902993 G
1 G
15902994 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15903364 original size:26 final size:26
Alignment explanation
Indices: 15903313--15903368 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15903303 TGGGTTGACT
*
15903313 TAGGCATACGGAGTTCATCCGTAGTC
1 TAGGCATACGGAGTTCATCCGCAGTC
*
15903339 TAGGCATATGGAGTTCATTCC-CAGTC
1 TAGGCATACGGAGTTCA-TCCGCAGTC
15903365 TAGG
1 TAGG
15903369 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCGCAGTC
Found at i:15904520 original size:26 final size:25
Alignment explanation
Indices: 15904484--15904535 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15904474 GTTGGCTTAG
*
15904484 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCA-GTCTAA
*
15904510 GCATACAAAGTTCATTCTAGTCTAA
1 GCATACAAAGTTCATTCCAGTCTAA
15904535 G
1 G
15904536 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (25 bp):
GCATACAAAGTTCATTCCAGTCTAA
Found at i:15905851 original size:26 final size:26
Alignment explanation
Indices: 15905815--15905867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15905805 GTTGGCTTAG
15905815 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
*
15905841 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
15905867 G
1 G
15905868 ATCGGGTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:15906188 original size:26 final size:26
Alignment explanation
Indices: 15906159--15906209 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15906149 TTGACTTAGG
*
15906159 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTAATCCCCAGTCTAAC
* *
15906185 CATATGGAGTTAATTCCCAGTCTAA
1 CATACGGAGTTAATCCCCAGTCTAA
15906210 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTAATCCCCAGTCTAAC
Found at i:15906677 original size:159 final size:159
Alignment explanation
Indices: 15906185--15906686 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 159
15906175 CCAGTCTAAC
* * * * * *
15906185 CATATGGAGTTAATTCCCA-GTCTAAGATCAGACCGGA-TCGAGTGTTGCAGCAGCAAGATCGGC
1 CATACGGAGTTCATT-CCATGTCTAACATCAGACCGGACT-GAGGGTTGCGGCAGCAAGATCGGT
* * * * *
15906248 AGCACGCAAGGGGGGATC-GGATCAATCCCTGACTTGTGCATTCTGCCTATCCGGCTGGCTGAGC
64 AGCACGAAAGGGGGGATCAGG-TCGATCCCTGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGC
* * * *
15906312 ACCCGCACGCCCGTTTCGTTGGTTGGTTTAGG
128 GCCCGAACGCCCATTTCGTGGGTTGGTTTAGG
* ** * * * **
15906344 CATATGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CTGGT
1 CATACGGAGTTCATTCCATGTCTAA-CATCAGACCGGACTGAGGGTTGCGGCAGCAAGATC-GGT
* * * * * * * * * *
15906407 AGCAC-ACAGAGGGGGACCGAGCT-GAT-TCTCGGCTTACGTATTATGCCTCTTCGACTGGCTCA
64 AGCACGAAAG-GGGGGATC-AGGTCGATCCCT-GACTTGCGCATTCTGCCTCTTCGGCTGGCTGA
* **
15906469 GGGCCCGAACGCCCATTTCGTGGGTTGAATTAGG
126 GCGCCCGAACGCCCATTTCGTGGGTTGGTTTAGG
** * *
15906503 CATACAAAGTTCATTCCCA-GTCTAACATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGATA
1 CATACGGAGTTCATT-CCATGTCTAACATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGGTA
* *
15906567 GCACGAAAGGGGGGATCAGGTCGATCCCTGACTTGCACATTCTGCCTCTTTGGCTGGCTGAGCGC
65 GCACGAAAGGGGGGATCAGGTCGATCCCTGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGC
* * *
15906632 CTGTACGCTCATTTCGTGGGTTGGTTTAGG
130 CCGAACGCCCATTTCGTGGGTTGGTTTAGG
*
15906662 CATACGGAGTACATTCCATGTCTAA
1 CATACGGAGTTCATTCCATGTCTAA
15906687 GCATACGAAG
Statistics
Matches: 261, Mismatches: 67, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
158 18 0.07
159 229 0.88
160 13 0.05
161 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
CATACGGAGTTCATTCCATGTCTAACATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGGTAG
CACGAAAGGGGGGATCAGGTCGATCCCTGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCC
CGAACGCCCATTTCGTGGGTTGGTTTAGG
Found at i:15906690 original size:26 final size:26
Alignment explanation
Indices: 15906661--15906713 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15906651 GTTGGTTTAG
*
15906661 GCATACGGAGTACATTCC-ATGTCTAA
1 GCATACGAAGTACATTCCTA-GTCTAA
*
15906687 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTACATTCCTAGTCTAA
15906713 G
1 G
15906714 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTACATTCCTAGTCTAA
Found at i:15906888 original size:197 final size:197
Alignment explanation
Indices: 15906553--15906942 Score: 462
Period size: 197 Copynumber: 2.0 Consensus size: 197
15906543 AGGGTTACGG
* * * * * *
15906553 CAGCAAGATCGATAGCACGAAAGGGGGGATCAGGTCGATCCCTGACTTGCACATTCTGCCTCTTT
1 CAGCAAGATCGACAGCACGAAAGGGGGGACCAGGCCAATCCCAGACTTGCACATTCTGCCTCTCT
* * * * ** *
15906618 GGCTGGCTGAGCGCCTGTACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTACATTCCATGT
66 GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACATCCCATGT
* *
15906683 CTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGCAGGACC
131 CTAAGCATACGAAGTGCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTACGACAGCAGGACC
15906748 AA
196 AA
* *
15906750 CAGCAAGATCGACAGCACG-CAGAGGGGGACCAGGCCAATCCCCAG-CTTGCGCATTCTGCCTCT
1 CAGCAAGATCGACAGCACGAAAG-GGGGGACCAGGCCAAT-CCCAGACTTGCACATTCTGCCTCT
* * * * * **
15906813 CTGGCCGGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTTATCCCCA
64 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACAT-CCCA
* * * * * *
15906878 -GTCTAAGCATACGGAGTGCATTTCTAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGG
128 TGTCTAAGCATACGAAGTGCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTACGACAGCAGG
15906942 A
193 A
15906943 TCGATAGTAT
Statistics
Matches: 160, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
196 2 0.01
197 151 0.94
198 7 0.04
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
CAGCAAGATCGACAGCACGAAAGGGGGGACCAGGCCAATCCCAGACTTGCACATTCTGCCTCTCT
GGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACATCCCATGT
CTAAGCATACGAAGTGCATTCCTAGTCTAAGATCAAACCAGACCAAGGGTTACGACAGCAGGACC
AA
Found at i:15907115 original size:184 final size:183
Alignment explanation
Indices: 15906822--15907253 Score: 495
Period size: 184 Copynumber: 2.3 Consensus size: 183
15906812 TCTGGCCGGT
* * * * * * *
15906822 TGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTTATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCA
* * * * * *
15906887 TACGGAGTGCATTTCTAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGTA
65 TACGAAGTGCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGAATCGACAGCA
* * * * *
15906952 TGCAAGGAGGATTGGACTGATCCCCGACTTACGCATTCTACCTCTCCGATCGAC
130 AGCAAGGAGGACTGGACCGATCCCCGACTTACACATTCTACCTCTCCGACCGAC
15907006 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
1 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCC-AGTCTAAGCA
* ** * * * * *
15907071 TATGAAGTTTATTCCCAGTTTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGAATCGACAGCA
65 TACGAAGTGCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGAATCGACAGCA
* * * * * * *
15907136 AGCAGGGGGGACTGGGCCGATTCTCGACTTGCACATTCTGCCTCTCCGACCGAC
130 AGCAAGGAGGACTGGACCGATCCCCGACTTACACATTCTACCTCTCCGACCGAC
* * * * *
15907190 TGATCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAAGC
15907254 CCAAGTCAGA
Statistics
Matches: 208, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 4 0.02
184 204 0.98
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCAT
ACGAAGTGCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGAATCGACAGCAA
GCAAGGAGGACTGGACCGATCCCCGACTTACACATTCTACCTCTCCGACCGAC
Found at i:15907460 original size:159 final size:157
Alignment explanation
Indices: 15907068--15907568 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 157
15907058 CCTAGTCTAA
* * * * *
15907068 GCATATGAAGTTTATTCCCA-GTTTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGAATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGAATCGAC
** * * * *
15907132 AGCA-AGCAG-GGGGGACTGGGCCGATTCTC-GACTTGCACATTCTGCCTCTCCGACCGACTGAT
65 AGCACA-CAGAGGGGGACCAGGCCGA-TCCCAG-CTTGCGCATTCTGCCTCTCCGACCG-CTAAG
* *
15907194 CGCCC-ACACGCCCATTTCGTGGGTTGGCTTAG
126 CGCCCGA-ACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * * *
15907226 GCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGTCAGATCGAGGGTTGTAGCAGTAGAACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAGATCAGA-TCAGACCGAGGGTTGCGGTAGCAGAATCGAC
** * *
15907290 AGCACGTAGAGGGGGACCAGGCCGATCCCAAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
65 AGCACACAGAGGGGGACCAGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCGACC-GCTAAGCG
* *
15907355 CCCGAACGCTTGTTTCGTGGGTTGACTTAG
128 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15907385 GCATACGAAGTT-ATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGAATCGAC
* * * * * *
15907448 AGCACACA-AGAGGGATCAGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGGTTGAAG-
65 AGCACACAGAGGGGGACCAGGCCGATCCCAG-CTTGCGCATTCTGCCTCTCCGACC-GCT-AAGC
* * * *
15907511 GCCCGCATGCTCGTTTTGTGGGTTGGCCTAG
127 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
15907542 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
15907569 CATATGGAGT
Statistics
Matches: 272, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 83 0.31
158 109 0.40
159 76 0.28
160 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGAATCGACA
GCACACAGAGGGGGACCAGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGACCGCTAAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15907571 original size:26 final size:26
Alignment explanation
Indices: 15907542--15907594 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15907532 GTTGGCCTAG
15907542 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
15907568 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15907594 G
1 G
15907595 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15907706 original size:13 final size:13
Alignment explanation
Indices: 15907688--15907714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15907678 GCGTATTCTG
15907688 CCTCTCCGACCGA
1 CCTCTCCGACCGA
15907701 CCTCTCCGACCGA
1 CCTCTCCGACCGA
15907714 C
1 C
15907715 TGAGTGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.56, G:0.15, T:0.15
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:15909136 original size:26 final size:26
Alignment explanation
Indices: 15909106--15909158 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15909096 GTTGGCTTAG
*
15909106 GCATACATAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15909132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15909158 G
1 G
15909159 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15909513 original size:159 final size:159
Alignment explanation
Indices: 15909238--15909624 Score: 416
Period size: 159 Copynumber: 2.4 Consensus size: 159
15909228 CCGATCTCCG
* * * * * * *
15909238 GCTTGTGCATTCTGCCTCTTCGACCTGCTGAGTGCCCGCATGCTCGTTTGATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
15909303 CATAGGGAGCTCATTCCATGTCAAAGCCCCAGCTGAACTGAGGGTTGTGGCAATGGGACTGGCAG
66 CATAGGGAGCTCATTCCATGTCAAAGCCCCAACCGAACCGAAGGTTGTGGCAATGGGACTGACAG
* * *
15909368 TACGCAAAGGGGGACCGGGCCAATCC-CT
131 CACACAAAGGGGGACCGGGCCAATCCTCA
*
15909396 GACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
1 G-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
15909461 GCATAGGGAGTTCATTCCATTTCTAAGCCCTAACCGGACCGAAGGTTGTGGCAGTGGGGCTGATA
65 GCATAGGGAGCTCATTCCATGTCAAAGCCCCAACCGAACCGAAGGTTGTGGCAATGGGACTGACA
* ** * *
15909526 GCACACAGAGGGGGATTGGGTCGATCCTCA
130 GCACACAAAGGGGGACCGGGCCAATCCTCA
* * ** * * * * *
15909556 GCTTGCGCATTATACCTCTCTAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTCGATTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
15909621 CATA
66 CATA
15909625 CAGAATTCAT
Statistics
Matches: 188, Mismatches: 39, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
158 1 0.01
159 185 0.98
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATAGGGAGCTCATTCCATGTCAAAGCCCCAACCGAACCGAAGGTTGTGGCAATGGGACTGACAG
CACACAAAGGGGGACCGGGCCAATCCTCA
Found at i:15910190 original size:26 final size:26
Alignment explanation
Indices: 15910160--15910212 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15910150 GTTCACTTAG
*
15910160 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15910186 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15910212 G
1 G
15910213 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15910394 original size:26 final size:26
Alignment explanation
Indices: 15910345--15910397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15910335 GTTGGCTTAG
*
15910345 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15910371 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15910397 G
1 G
15910398 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15910582 original size:26 final size:26
Alignment explanation
Indices: 15910553--15910605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15910543 GTTGACTTAG
*
15910553 GCATCCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15910579 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15910605 G
1 G
15910606 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15910868 original size:159 final size:158
Alignment explanation
Indices: 15910616--15911082 Score: 475
Period size: 159 Copynumber: 2.9 Consensus size: 158
15910606 ATCGAATCGA
* * * * * * * *
15910616 ATCGAGGGTTGCGGCAGTAGGATCGGCAGCCCGC-AGGAGGGATC-GAGCCGATCCCTGACTTAC
1 ATCGAGGGTTGTGCCAGCAGGATCGACAGCACGCAAGGGGGGACCAG-GCCGATCCCTGACTTGC
* * * *
15910679 GCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
65 GCATTCTGCCTCTCCG-GTAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-G
*
15910744 GAGTTCATTCCATGTCTAAGCCCCA-ACCGG
128 GAGTTCATTCCATGTCTAAGCACCAGACCGG
* * ** * * *
15910774 A-CTGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGC-TGAGGGTGATC-GGACCGATCCCTGACT
1 ATC-GAGGGTTGTGCCAGCAGGATC-GACAGCACGCAAG-GGGGGACCAGG-CCGATCCCTGACT
* * * *
15910835 TGCGTATTATGCCTCTCCGGTTAGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
62 TGCGCATTCTGCCTCTCCGG-TAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
15910900 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGG
126 A-GGAGTTCATT-CCATGTCTAAGCACCAGACCGG
* * *
15910933 ATCGAGGGTTGTGCCAGTAGGATCGACAGCACGCAAGGGGGGACCAGGCCGGTCCCTGGCTTGCG
1 ATCGAGGGTTGTGCCAGCAGGATCGACAGCACGCAAGGGGGGACCAGGCCGATCCCTGACTTGCG
** * *
15910998 CATTCTGCCTCTCCGGCCGATTGAGTGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATAGGA
66 CATTCTGCCTCTCCGGTAG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGA
*
15911063 GTTCATTCCATGCCTAAGCA
130 GTTCATTCCATGTCTAAGCA
15911083 TACGGAGTTC
Statistics
Matches: 256, Mismatches: 39, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
157 5 0.02
158 46 0.18
159 197 0.77
160 8 0.03
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ATCGAGGGTTGTGCCAGCAGGATCGACAGCACGCAAGGGGGGACCAGGCCGATCCCTGACTTGCG
CATTCTGCCTCTCCGGTAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAG
TTCATTCCATGTCTAAGCACCAGACCGG
Found at i:15911336 original size:16 final size:16
Alignment explanation
Indices: 15911315--15911349 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15911305 AAGACCCGCA
*
15911315 GCAGGATCGACAGCAT
1 GCAGGATCCACAGCAT
*
15911331 GCAGGATCCCCAGCAT
1 GCAGGATCCACAGCAT
15911347 GCA
1 GCA
15911350 CATTCTGCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.31, G:0.29, T:0.11
Consensus pattern (16 bp):
GCAGGATCCACAGCAT
Found at i:15911614 original size:26 final size:26
Alignment explanation
Indices: 15911578--15911630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15911568 GTTGACTTAG
15911578 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
**
15911604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
15911630 G
1 G
15911631 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:15912082 original size:158 final size:156
Alignment explanation
Indices: 15911604--15912105 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 156
15911594 CCCAGTCTAA
* * *
15911604 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * *
15911669 GCACGTAGAGGGGACCGAGCCAATCCCCGGCTTGTACATTCTGCCTCTTCGGCCGGCTAAGCGCC
66 GCACGCAG-GGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGC-CC
* * * * *
15911734 CGCATGCCCGTTTCATGGGTTGGCTTAG
129 CACACGCTCGTTTCGTGGGTTGACTTAG
* * ** *
15911762 GCATA-GTGAGTTCATT-CCATGTTTAAG-TCCCAG-CCAGACCAAGGGTTGTGGCAGTGGGACC
1 GCATACG-GAGTTCATTCCCA-GTCTAAGAT--CAGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * * * * * **
15911823 GGCAGCACTCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCACCTCA
62 GGCAGCACGC--AGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCT-A
* * *
15911888 ACGCCCGA-ACGCTCATTTTGTGGGTTGACTTAG
124 A-GCCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15911921 GCATACGAAGTTCATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
15911986 GCACGCATGGGGGATCGAGTCGGTCCCCGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCACC
66 GCACGCA-GGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGC-CC
* * * *
15912051 TACACGCTCGTTTCGTGGGCTGTCTTTG
129 CACACGCTCGTTTCGTGGGTTGACTTAG
15912079 GCATACGGAGTTCA-TCCCTAGTCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
15912106 CATATGAAAT
Statistics
Matches: 269, Mismatches: 59, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 132 0.49
159 108 0.40
160 11 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGCCCCA
CACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15912109 original size:26 final size:26
Alignment explanation
Indices: 15912079--15912131 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15912069 GCTGTCTTTG
* *
15912079 GCATACGGAGTTC-ATCCCTAGTCTAA
1 GCATACGAAATTCAATCCC-AGTCTAA
*
15912105 GCATATGAAATTCAATCCCAGTCTAA
1 GCATACGAAATTCAATCCCAGTCTAA
15912131 G
1 G
15912132 ATTGAACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCAATCCCAGTCTAA
Found at i:15912471 original size:26 final size:26
Alignment explanation
Indices: 15912421--15912473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15912411 GTTGGCTTAG
*
15912421 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
15912447 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15912473 G
1 G
15912474 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15913192 original size:26 final size:26
Alignment explanation
Indices: 15913156--15913208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15913146 GTTGACTTAG
*
15913156 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15913182 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15913208 G
1 G
15913209 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15913656 original size:158 final size:156
Alignment explanation
Indices: 15913182--15913683 Score: 452
Period size: 158 Copynumber: 3.2 Consensus size: 156
15913172 CCTAGTCTAA
* * * * * * * *
15913182 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTACAGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACGA-ACCGAGGGTTGCGGAAGCAGGATTGAC
* * * * * * * ** *
15913246 AGCATGCAGGGGGGACCGAGTCGTTCCTCGGCTTGCACATTCTGCCTCTCCGGCCAACTGAGTGC
64 AGCATGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CAGCTGACTGAGCGC
* *
15913311 CCGCACCCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
15913340 CCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGAAGCAGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGAC-GAACCGAGGGTTGCGGAAGCAGGATTGAC
* * * * * * *
15913404 AGCATGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGAATTGTGCCTCTCCGGTCGGCTCAGCG
64 AGCATGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGCT-GACTGAGCG
** * **
15913469 CCCAAACGCTCGTTTCGTGGGTTAACTTAG
127 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
** * *
15913499 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGAACCGAGGGTTGCGGTAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGAACCGAGGGTTGCGGAAGCAGGATTGAC
* *
15913563 AGCATGCATGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCAAGCTGACTGAGCGC
64 AGCATGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-AGCTGACTGAGCGC
*
15913628 CCGCACACTCGTTTCGTGAGTTGGCTTAG
128 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
15913657 GCATAGGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15913684 CATGCAGAAT
Statistics
Matches: 267, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGAACCGAGGGTTGCGGAAGCAGGATTGACAG
CATGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGCTGACTGAGCGCCCG
CACACTCGTTTCGTGGGTTGGCTTAG
Found at i:15913883 original size:26 final size:26
Alignment explanation
Indices: 15913853--15913905 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15913843 GTTGACTTAG
15913853 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15913879 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15913905 G
1 G
15913906 ATCTAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15914946 original size:26 final size:26
Alignment explanation
Indices: 15914916--15914968 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15914906 GTTGACTTAG
15914916 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15914942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15914968 G
1 G
15914969 ATCTAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15915914 original size:25 final size:26
Alignment explanation
Indices: 15915877--15915928 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
15915867 GTTGGCTTAG
15915877 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15915903 GCATAC-AAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15915928 G
1 G
15915929 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15916283 original size:26 final size:26
Alignment explanation
Indices: 15916254--15916306 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15916244 GTCGACTTAG
15916254 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15916280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15916306 G
1 G
15916307 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15916690 original size:53 final size:54
Alignment explanation
Indices: 15916585--15916690 Score: 119
Period size: 53 Copynumber: 2.0 Consensus size: 54
15916575 CTCATTGCAT
* ** * *
15916585 GGGTTGACTTAGGCATACGGAGTTTGTTCCCAGTCTAAGATCAGACCGGACCAA
1 GGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAA
*
15916639 GGGTTG-CTTAGGCAAACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCAGACCA
1 GGGTTGACTTAGGCAAACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCA
15916691 GCAGTGGGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.07
53 33 0.75
54 8 0.18
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (54 bp):
GGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAA
Found at i:15916849 original size:26 final size:26
Alignment explanation
Indices: 15916813--15916863 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15916803 GTTGACTTAG
15916813 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15916839 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15916864 TGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15917758 original size:159 final size:158
Alignment explanation
Indices: 15917380--15917834 Score: 497
Period size: 159 Copynumber: 2.9 Consensus size: 158
15917370 AGCAGGACCA
* * * * *
15917380 GCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCC
1 GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTC
* * * *
15917445 GGTCGGCTGAGCCCCCGCATGCCCATTTCGTGGGTTGGGTTAGGCATA-TGAAGTTCATT-CCAT
66 GGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCCA-
* * * *
15917508 GTC-AAGCCTTAGTCGGACCGAGGGTTGTC
129 GTCTAAGCATTAGCCAGACCAAGGGTTGTC
* * * * *
15917537 GCAGCAAGACCGGCAGCATGCAGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTT
1 GCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTT
** * * * *
15917602 CAATTGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAG
65 CGGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
*
15917667 TCTAAG-ATTGGACCAGACCAAGGGTTG-C
130 TCTAAGCATTAG-CCAGACCAAGGGTTGTC
* * *
15917695 GGCAGCAGGATCGACAGCACGCAGGGGGAGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT
1 -GCAGCAGGATCGGCAGCACGCAGGGGG-GACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCT
* * * * * * **
15917760 TCGGCCAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCTT
64 TCGGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA
15917825 GTCTAAGCAT
129 GTCTAAGCAT
15917835 ACGGAGTTCA
Statistics
Matches: 243, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
157 19 0.08
158 94 0.39
159 128 0.53
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTC
GGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
CTAAGCATTAGCCAGACCAAGGGTTGTC
Found at i:15917837 original size:26 final size:26
Alignment explanation
Indices: 15917807--15917857 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917797 TGGCTTAGGT
**
15917807 ATACGGAGTTCATTCCTTGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
15917833 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15917858 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15918541 original size:26 final size:26
Alignment explanation
Indices: 15918504--15918556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918494 GTTGGGTTAG
* *
15918504 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
15918530 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15918556 G
1 G
15918557 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15918830 original size:158 final size:158
Alignment explanation
Indices: 15918530--15919030 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 158
15918520 CCCAGTCTAA
* * * * * **
15918530 GCATACGAAGTTCATTCCCA-ATCTAAGATCGGATCAGACCG-AGGATTGCGGCAATAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAAGG-TTGCGGCAGCAGGATCGA
* * * * ** * * * *
15918593 CAGCACGTAGGGGGGACCGTGCCGATCCCCGGTTTGTACATTCTACCTCTCCGGCTTGCTGAGCG
64 TAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCTGGCTGAGCG
*
15918658 CCCGCACGCCCATTTCGTGGGTTGGCTTTG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTTG
* * * * * * *
15918688 GCATAGGGAGTTCATTCCATGTCTACGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAGACCGAAGGTTGCGGCAGCAGGATC-GA
* * * *
15918751 CT-GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGTCTCTTCAGCTGGCTCAG
64 -TAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCTGGCTGAG
*
15918815 CGCCCGCA-GCTCATTTCGTGGGTTGACTTAT-
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTT-TG
* * * * *
15918846 GCATACTGAGTTCATACCCA-ATCTAAGATCAGACCAGACCGAAGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCAT-TCCATGTCTAAGACCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGAT
* * * *
15918910 AGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGACCGGCTGATCG
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAG-CTGGCTGAGCG
* * * *
15918974 CCTGCACTCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTTG
*
15919004 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15919031 CATACGGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 57 0.21
158 152 0.56
159 58 0.21
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCTGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTTG
Found at i:15919040 original size:26 final size:26
Alignment explanation
Indices: 15919004--15919056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918994 GTTGGCTTAG
**
15919004 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15919030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15919056 G
1 G
15919057 GTTTCGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15920092 original size:157 final size:159
Alignment explanation
Indices: 15919792--15920250 Score: 392
Period size: 158 Copynumber: 2.9 Consensus size: 159
15919782 GGACCAGACC
* * * * *
15919792 GAGGGTTACGACAGTAGGATCGATAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
1 GAGGGTTACGACAGCAGGATCGATAGCACACAGCGGGGACCAGGCCGATCCCCGGCTTGCACACT
* * * * * *
15919857 CTGCCTCTCCGGTCCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 ATGCCTCTCCGGTCCGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGT
15919922 TCATTCCATGTCTACACCCCAGCCGGACT
131 TCATTCCATGTCTACACCCCAGCCGGACT
** * *
15919951 GAGGGTTGTGACAGCAGGATCGGTAGCACAC-GCGGGGACCAGGTCGATCCCCGGCTTGCACACT
1 GAGGGTTACGACAGCAGGATCGATAGCACACAGCGGGGACCAGGCCGATCCCCGGCTTGCACACT
* ** * *
15920015 ATGCCTCTTCGG-CCGGCTCAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGT
66 ATGCCTCTCCGGTCCGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGT
*** * *
15920079 TCATTGCCA-GTCTA-AGATCGGACTGGA-T
131 TCATT-CCATGTCTACACCCCAG-CCGGACT
* * * * * * * * * * *
15920107 CGAGGGTTGCGTCAGCAGGATTGACAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTACACAT
1 -GAGGGTTACGACAGCAGGATCGATAGCACACAGCGGGGACCAGGCCGATCCCCGGCTTGCACAC
* * * ** * * * * * * * *
15920172 TCTACCTCTCC-GACCGATTAAGCAG-CCACATGCTCGTTTCATGGGTTGGCTTAGGAATACGGA
65 TATGCCTCTCCGGTCCGGCTCAGC-GCCCACACGCCCATTTCGTGGGTTGACTTAGGCATACGAA
15920235 GTTCATTCCATGTCTA
129 GTTCATTCCATGTCTA
15920251 AGCATACAGA
Statistics
Matches: 240, Mismatches: 53, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.02
157 86 0.36
158 122 0.51
159 28 0.12
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GAGGGTTACGACAGCAGGATCGATAGCACACAGCGGGGACCAGGCCGATCCCCGGCTTGCACACT
ATGCCTCTCCGGTCCGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATACGAAGT
TCATTCCATGTCTACACCCCAGCCGGACT
Found at i:15920262 original size:26 final size:26
Alignment explanation
Indices: 15920228--15920278 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15920218 TGGCTTAGGA
*
15920228 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
15920254 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15920279 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15920977 original size:26 final size:26
Alignment explanation
Indices: 15920948--15920998 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15920938 TTGACTTAGG
15920948 CATACGGAGTTCA-TCTCCAGTCTAAC
1 CATACGGAGTTCATTC-CCAGTCTAAC
15920974 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15920999 GATCGGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:15927142 original size:26 final size:26
Alignment explanation
Indices: 15927106--15927158 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927096 GTTGGCTTAG
*
15927106 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15927132 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15927158 G
1 G
15927159 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.