Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 103 of 138
Found at i:15927505 original size:26 final size:26
Alignment explanation
Indices: 15927475--15927527 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927465 GCTGACTTAG
15927475 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
15927501 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15927527 G
1 G
15927528 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15927999 original size:158 final size:157
Alignment explanation
Indices: 15927501--15928001 Score: 531
Period size: 159 Copynumber: 3.2 Consensus size: 157
15927491 CCCAGTCTAA
* * * *
15927501 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * * * *
15927565 AGCACGCAGGGGGATCGAGCCGATCCTCGGCTTATGCACTCTGCCTTTCCGACCGGCTAAGCGCC
65 AGCACGCAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
* * *
15927630 CACACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * **
15927658 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGAACTGAGGGTTGTAGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * **
15927722 AGCACGCAGAGGGGGACCGGGCTGATCCTTGGCTTGCGCATTATGCCTCTTTGGCCGGTTGAGCG
65 AGCACGC--AGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
* *
15927787 CCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15927817 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCAAGAGTTGTGGCAGCATGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
15927881 AGCACGCAGGGAGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
65 AGCACGCAGGG-GGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGC
* * *
15927946 TCGCGCGCTCGTTTCGTTGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15927975 GCATACAGAGTTCATTGCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15928002 CATACAGAGT
Statistics
Matches: 276, Mismatches: 60, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
156 2 0.01
157 59 0.21
158 91 0.33
159 119 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15928024 original size:26 final size:26
Alignment explanation
Indices: 15927975--15928027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927965 GTTGGCTTAG
*
15927975 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15928001 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
15928027 G
1 G
15928028 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15928944 original size:184 final size:185
Alignment explanation
Indices: 15928623--15929459 Score: 665
Period size: 184 Copynumber: 4.5 Consensus size: 185
15928613 ACCACCCGTT
* * * * * * ** * *
15928623 CGATCCTCGACTTGCGCATCCTACCTCTCTGGTCGGCTGAGTGCCTACATGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * *
15928688 TGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAGCATA-AGGAATTCATTCCTAGTCTAAGAT
66 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATATA-GAGTTCATTCCCAGTCTAAGAT
* * * * *
15928751 C-GAACCGGACCAAGGGTTACGGCAGTAGGATCGGTAGCACACAG-GGGGGACCGGGC
129 CAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCAGGC
* * * * * *
15928807 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCGCCCGCGCGCTTGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
*
15928872 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCTTTCCCAGTCTAAGATCA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCA
* * *
15928937 GACCGGACCGAGGGTTGCGGCAGTAGGACCAGCAGCAGGATCGACAGCACGGATGGGGGATCAGG
131 GACCGGACCGAGGGTTGCGGCAGCAGGATC-G--GCA-G--C-ACA-CA--GA-GGGGGACCAGG
15929002 C
185 C
* * *
15929003 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGTTCAGCACCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
* * ** * ** *
15929068 TGGCTTAGGCATACTGAGTTCATTCCATGTCTAATC-CCTAGCCAG---A-T-CGAGGGT-TG-T
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAG--AGTTCATTCCCAGTCTAAGAT
* * * * ** * *
15929125 --G---GTAGC-A-GGAT-CGACAGCAGGGATCGATAGCACGCAGAGGGGGACCGGGC
129 CAGACCGGACCGAGGGTTGCGGCAGCA-GGATCGGCAGCACACAGAGGGGGACCAGGC
* * * * **** *
15929175 TGATCCTCGGCTTGCGCATTATGCCTTTCCAACCGGTTGAGCGCCCGCACGCTTGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * **
15929240 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGGGTTCATTCCTTGTCTAAGATC
66 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
15929304 AGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGTACGCA-TGGGGGATCAGCC
130 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCAGGC
* * * * *
15929359 CGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCTGTTGAGCACCCGCACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
*
15929424 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15929460 CCCAGCCGGA
Statistics
Matches: 513, Mismatches: 104, Indels: 72
0.74 0.15 0.10
Matches are distributed among these distances:
171 1 0.00
172 93 0.18
173 7 0.01
174 1 0.00
175 3 0.01
176 5 0.01
177 2 0.00
178 1 0.00
179 1 0.00
180 2 0.00
182 7 0.01
183 13 0.03
184 223 0.43
185 25 0.05
186 6 0.01
187 2 0.00
188 2 0.00
190 2 0.00
191 4 0.01
192 6 0.01
193 1 0.00
194 1 0.00
195 3 0.01
196 100 0.19
197 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCAGGC
Found at i:15929498 original size:356 final size:360
Alignment explanation
Indices: 15928778--15929499 Score: 970
Period size: 356 Copynumber: 2.0 Consensus size: 360
15928768 TACGGCAGTA
* * ***
15928778 GGATCGGTAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAG
1 GGATCGATAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAACCAG
* * * *
15928843 TTGAGCGCCCGCGCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
* *
15928908 ATATAGAGTTCTTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGACCAGCAGC
131 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-AGT---A--AGCA-C
* * *
15928973 AGGATCGACAGCACGGATGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCG
189 AGGATCGACAGCACGCATGGGGGATCAGCCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCG
* * *
15929038 GTTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAT
254 GTTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
15929103 CCCTAGCCAGATCGAGGGTTGTGGTAGCAGGATCGACAGCAG
319 CCCCAGCCAGATAGAGGGTTGTGGCAGCAGGACCGACAGCAG
* * * * * *
15929145 GGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTTTCCAACCG
1 GGATCGATAGCACACAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAACCA
15929210 GTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
65 GTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* **
15929274 GCATACAGGGTTCATTCCTTGTCTAAGATCAGACCGGACCGAGGGTTGC-G-GT-AGCA-A-GAT
129 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGAGTAAGCACAGGAT
* * * * * *
15929334 CGGCAGTACGCATGGGGGATCAGCCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCTGTTGA
194 CGACAGCACGCATGGGGGATCAGCCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTCA
*
15929399 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
259 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* *
15929464 GCCGGATAGAGGGTTGTGGCAGCGGGACCGACAGCA
324 GCCAGATAGAGGGTTGTGGCAGCAGGACCGACAGCA
15929500 CGTAGAGGGG
Statistics
Matches: 314, Mismatches: 39, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
356 150 0.48
357 1 0.00
359 4 0.01
365 2 0.01
367 16 0.05
368 138 0.44
369 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (360 bp):
GGATCGATAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAACCAG
TTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGAGTAAGCACAGGATCG
ACAGCACGCATGGGGGATCAGCCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTCAGC
ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGATAGAGGGTTGTGGCAGCAGGACCGACAGCAG
Found at i:15929753 original size:158 final size:158
Alignment explanation
Indices: 15929274--15929766 Score: 458
Period size: 158 Copynumber: 3.1 Consensus size: 158
15929264 CCCAGTCTAA
* * * *
15929274 GCATACAGG-GTTCATT-CCTTGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGG
1 GCATAC-GGAGTTCATTCCCATCTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * *
15929337 CAGTACGCATGGGGGATCAGCCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCTGTTGAGCA
65 CAGCACGCAGGGGGGATCAGCCCGATCCCCGGCTTGTGCATTCTGCCTCTC-CGCCGGCTGAGCA
*
15929402 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** ** * * * *
15929432 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATAGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCATCTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * ** * * * * * *
15929495 CAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTAC-GCATCTTCGACCGACTCAG
65 CAGCACGCAG-GGGGGATCAGCCCGATCCCCGGCTTGTGCATT-CTGCCTCTCCG-CCGGCTGAG
* * * * * *
15929559 CACCCACACACTCGTTTCGTGGGTCGACTTAT
127 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
15929591 GCATATGGAGTTCATTCCCA-CTCTCAGATCGGACTGGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCATCTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
15929655 AGCACGCAGGGGGGATCAGCCCAATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGC
66 AGCACGCAGGGGGGATCAGCCCGATCCCCGGCTTGTGCATTCTGCCTCTCC-GCCGGCTGAGCAC
* *
15929720 CCGTATGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
15929749 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
15929767 GTGTCTATGC
Statistics
Matches: 254, Mismatches: 72, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 131 0.52
159 116 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATCTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
AGCACGCAGGGGGGATCAGCCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGCCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15929798 original size:26 final size:26
Alignment explanation
Indices: 15929749--15929799 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15929739 GTTGGCTTAG
**
15929749 GCATACGGAGTTCATTCCGTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
15929775 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15929800 AGATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:15930804 original size:159 final size:157
Alignment explanation
Indices: 15930530--15931246 Score: 589
Period size: 158 Copynumber: 4.5 Consensus size: 157
15930520 TAAGATTGAA
* * ** * * * *** * *
15930530 CCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGTAG-GGGGGACTGGATGGATCCTCAGCT
1 CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCT
* * * * ** ** * *
15930594 TGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCAT
66 TGCGCATTATGCCTCTCCGGTC-GCTGAATGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAT
* * * *
15930659 AGGGAGTTCATTCTATGGCTAAGCCCCAG
130 ACGGAGTTCATTCCA-GTCTAAGCACCAG
* * * * * *
15930688 CCGGATCGAAGGTTGTGGTAGTGGGATCGACAGCACGAAGAAGGGGACCGGGCCGATCCCTGGCT
1 CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCT
* * * *
15930753 TGCGCATTATGCCTCTCCGGCCAGCTCAATGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCAT
66 TGCGCATTATGCCTCTCCGGTC-GCTGAATGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAT
* * *
15930818 ACGGAGTTCATACCCAGTCT-AGGATCAG
130 ACGGAGTTCAT-TCCAGTCTAAGCACCAG
* ** * * ** *
15930846 ACTGGACCGAGGGTTGTGGCAGCCAGATCGACAGCACGCAG-GGGGGATCGGATCGATCCTCGGC
1 -CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGC
* * * ** * *
15930910 TTGCGCATTCTACCTCTCCGGTCGACTGAATGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCA
65 TTGCGCATTATGCCTCTCCGGTCG-CTGAATGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCA
* * *
15930975 TACAGAGTTCATTCCTAGTCTAAG-ATCAA
129 TACGGAGTTCATTCC-AGTCTAAGCACCAG
* * * * * * *
15931004 CCGGACCGTGGGTTGTGGCAGCAGGATCGGCAGCATGCAGGGGGGGACCAGGCCGATCCCCGGCT
1 CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCT
* ** * * * **
15931069 TGCGCATTCTGGGTCTCTGATCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAT
66 TGCGCATTATGCCTCTCCGGTC-GCTGAATGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAT
* *
15931134 ACGGAGTTTATTCCATGTCTAAGCCCCAG
130 ACGGAGTTCATTCCA-GTCTAAGCACCAG
** * * *
15931163 CCGGAATGAGGGTTGTGGCAACGGGATTGACAGCACGCAA-AGGGGGACCGGGTCGATCCCCGGC
1 CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACG-AAGAGGGGGACCGGGCCGATCCCCGGC
*
15931227 TTGCACATTATGCCTCTCCG
65 TTGCGCATTATGCCTCTCCG
15931247 ACCGACCTCT
Statistics
Matches: 438, Mismatches: 110, Indels: 21
0.77 0.19 0.04
Matches are distributed among these distances:
157 38 0.09
158 214 0.49
159 183 0.42
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCT
TGCGCATTATGCCTCTCCGGTCGCTGAATGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCAGTCTAAGCACCAG
Found at i:15931133 original size:316 final size:317
Alignment explanation
Indices: 15930532--15931141 Score: 724
Period size: 317 Copynumber: 1.9 Consensus size: 317
15930522 AGATTGAACC
* * * *
15930532 GGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGTAGGGGGGACTGGATGGATCCTCAGCTTGC
1 GGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGATCGATCCTCAGCTTGC
* * * * * **
15930597 ACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 ACATTCTACCTCTCCGGCCGACTGAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACA
* * * * **
15930662 GAGTTCATTCTATGGCTAAGCCCCAGCCGGATCGAAGGTTGTGGTAGTGGGATCGACAGCACGAA
131 GAGTTCATTCTATGGCTAAGCACCAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACGAA
* * * *
15930727 GAAGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAATGCCCGCATG
196 GAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGCATG
*
15930792 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAGGATCAGACT
261 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAGGATCAGACT
* * *
15930849 GGACCGAGGGTTGTGGCAGCCA-GATCGACAGCACGCAGGGGGGA-TCGGATCGATCCTCGGCTT
1 GGACCGAGGGTTGCGACAG-CAGGATCGACAGCACGCAGGGGGGACT-GGATCGATCCTCAGCTT
* * * * *
15930912 GCGCATTCTACCTCTCCGGTCGACTGAATGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATA
64 GCACATTCTACCTCTCCGGCCGACTGAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
* * ** * *
15930977 CAGAGTTCATTCCTA-GTCTAAG-ATCAACCGGACCGTGGGTTGTGGCAGCAGGATCGGCAGCAT
129 CAGAGTTCATT-CTATGGCTAAGCACCAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGCAC
* ** * ** * * * * * *
15931040 GCAGGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGGGTCTCTGATCGGTTGAGCGCCCGC
193 GAAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGC
*
15931105 ATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
258 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
15931142 TATTCCATGT
Statistics
Matches: 241, Mismatches: 49, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
316 115 0.48
317 122 0.51
318 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (317 bp):
GGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGATCGATCCTCAGCTTGC
ACATTCTACCTCTCCGGCCGACTGAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACA
GAGTTCATTCTATGGCTAAGCACCAACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACGAA
GAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGCATG
CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAGGATCAGACT
Found at i:15933218 original size:26 final size:26
Alignment explanation
Indices: 15933182--15933234 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15933172 GTTGACTTAG
15933182 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15933208 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15933234 G
1 G
15933235 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15933558 original size:26 final size:26
Alignment explanation
Indices: 15933522--15933574 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15933512 GTTGACTTAG
15933522 GCATACAGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCAGT-CCCAGTCTAA
15933548 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
15933574 G
1 G
15933575 ATCCAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:15933733 original size:341 final size:341
Alignment explanation
Indices: 15933110--15933918 Score: 1007
Period size: 341 Copynumber: 2.4 Consensus size: 341
15933100 CCACCCGTTT
* * * * *
15933110 GATCCCTGGCTTGCGCATCCTGCCTCTTTGGTCGGCTGAGCGTCCGCACGCACGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
15933175 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCCA
* * * * * * *
15933240 ACCAGACCGAGTGTTGCGGCAATAGGATCCAGCATGCAGGGGGGATAGGGCCGATCCCCAGCTTG
131 ACCAGACCGAGGGTTGCGGCAACAAGATCCAGCACGCAAGGGGGACAGAGCCGATCCCCAGCTTG
* * * * * * * * *
15933305 CGTATTTTGCCTGTCTGGCCGGTTGAACACCCGCACCCCCGTTTTGTGGGTTAGTTTAGGCATAG
196 CGCATTCTACCTCTCCGACCGGCTGAACACCCGCACCCCCGTTTCGTGGGTTAGCTTAGGCATAG
* ** * *
15933370 GGAGTTCATTCCATGTCTAAGCCCCAGTC-AGGCTGAGGGTTGTGGCAGCGGGATCGACAGCATA
261 GGAGTTCATTCCATGTCTAAGCCCCAGCCAAATC-GAGGGTTGTGGCAGCGGGACCGACAGCACA
*
15933434 CAGAGGGGGATCGGGTC
325 CAGAGGGGGATCGGGCC
* * * * * *
15933451 GATCCCTAGCTTGCGCATTATGCCTCTCTAACCGGCTCAGCGCCCGCACGCTTGTTT-GTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
15933515 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAGTCCCAGTCTAAGATCCA
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCCA
* * * *
15933580 ATCAGATCGAGGGTTGCGGCAGCAAGATCACAGCACGCAAGGGGGACCA-AGCCGATCCCCGGCT
131 ACCAGACCGAGGGTTGCGGCAACAAGATC-CAGCACGCAAGGGGGA-CAGAGCCGATCCCCAGCT
* *** * * *
15933644 TGTGCATTCTACCTCTCCGACCGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAT
194 TGCGCATTCTACCTCTCCGACCGGCTGAACACCCGCACCCCCGTTTCGTGGGTTAGCTTAGGCAT
* *
15933709 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTGGTAGTGGGACCGACAGCAC
259 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTGGCAGCGGGACCGACAGCAC
* *
15933774 GCAGAGGTGGATCGGGCC
324 ACAGAGGGGGATCGGGCC
* * * *
15933792 GATCCCCGGGTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
15933857 GGCTTAGGCATACGGAGTTCAT-TCCATGTCCAAGCATAC-GAAGTTCATTCTCAGTCTAAGAT
66 GACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGAT
15933919 TTTGAGCCAC
Statistics
Matches: 396, Mismatches: 66, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
340 93 0.23
341 243 0.61
342 60 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (341 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCCA
ACCAGACCGAGGGTTGCGGCAACAAGATCCAGCACGCAAGGGGGACAGAGCCGATCCCCAGCTTG
CGCATTCTACCTCTCCGACCGGCTGAACACCCGCACCCCCGTTTCGTGGGTTAGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTGGCAGCGGGACCGACAGCACAC
AGAGGGGGATCGGGCC
Found at i:15935836 original size:159 final size:156
Alignment explanation
Indices: 15935464--15935840 Score: 395
Period size: 159 Copynumber: 2.4 Consensus size: 156
15935454 GCTCATTTTA
* *
15935464 TGGGTTGAATTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGAC
1 TGGGTTG-ATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGAC
* * * * * * *
15935529 AGCGGGATCAACAGCATGTAGGGGGGATCGGGTCGATCTTCGACTTGTGCAATCTACCTTCTGGT
65 AGCGGGATCAACAGCACGTAGGGGGGATAGGCTCGATCTCCGACTTGTGCAATATACCTTCTCGA
* *
15935594 CGGCTGAGCGCCCGCACGCCCATTTCG
130 CGGCTCAGCGCCCGCACACCCATTTCG
* * ** * *
15935621 TGGGATGGATTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTG
1 TGGG-TTGATTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTG
* * * *
15935684 GCAGCGGGA-CAGGCAGCACGTAGAGGGGGACTAGGCT-GATCTCCGACTTGTGCATTATGCC-T
63 ACAGCGGGATCA-ACAGCACGTAG-GGGGGA-TAGGCTCGATCTCCGACTTGTGCAATATACCTT
* * * *
15935746 CTTCGACTGGCTCAGTGCCCGCCCACTCGTTTCG
125 C-TCGAC-GGCTCAGCGCCCGCACACCCATTTCG
*
15935780 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
1 TGGGTTGA-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTG
15935841 CAGCAGCAGG
Statistics
Matches: 177, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
156 5 0.03
157 63 0.36
158 40 0.23
159 66 0.37
160 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (156 bp):
TGGGTTGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGACA
GCGGGATCAACAGCACGTAGGGGGGATAGGCTCGATCTCCGACTTGTGCAATATACCTTCTCGAC
GGCTCAGCGCCCGCACACCCATTTCG
Found at i:15935947 original size:26 final size:26
Alignment explanation
Indices: 15935918--15935970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15935908 GTTGGCTTAG
15935918 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15935944 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15935970 G
1 G
15935971 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15936309 original size:26 final size:26
Alignment explanation
Indices: 15936273--15936350 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
15936263 GTTAACTTAG
15936273 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15936299 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15936325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15936351 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15936627 original size:159 final size:157
Alignment explanation
Indices: 15936365--15936828 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 157
15936355 GACCGGATTG
* * * * *
15936365 AGGGTTGCGGTAGCAGGATCGACAGCAAGTAGGGGGGACCGAGCCTATCCCCGGCTTGCGCATTT
1 AGGGTTGTGGCAGCAGGATCGACAGCAAGCAGGGGGGA-CGAGCCGATCCCCGGCTTGCGCATTA
* * * * *
15936430 TGCCT-TTCTGGTCGGCTAAGCGGCCGAACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTT
65 TGCCTCTTC-GGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTT
*
15936494 CAATCCATGTCTAAGCCCCAG-TCAGACCA
128 CAATCCATGTCTAAGCACCAGATCAGACCA
* * * * *
15936523 AGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGGGGACTGAGCCGATCCTCGACTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCAAGCAG-GGGGGAC-GAGCCGATCCCCGGCTTGCGCATT
** * * *
15936588 ATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTT
64 ATGCCTCTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTT
* * **
15936653 CAGTCC-TAGTCTAAG-ATCAGATTGGACCA
128 CAATCCAT-GTCTAAGCACCAGATCAGACCA
* ** * * * * * *
15936682 AGGGTTGTGACAATAGGATTGATAGCAAACTGGGGGGGACCAGGTCGATCCCCGGCTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCAAGC-AGGGGGGACGA-GCCGATCCCCGGCTTGCGCATT
* * * * * * *
15936747 CTGCCTCTCCGGTAGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTT
64 ATGCCTCTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTT
* *
15936812 CATTCCATGTGTAAGCA
128 CAATCCATGTCTAAGCA
15936829 TACGAAGTTC
Statistics
Matches: 243, Mismatches: 52, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
158 34 0.14
159 202 0.83
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
AGGGTTGTGGCAGCAGGATCGACAGCAAGCAGGGGGGACGAGCCGATCCCCGGCTTGCGCATTAT
GCCTCTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCAA
TCCATGTCTAAGCACCAGATCAGACCA
Found at i:15937855 original size:159 final size:156
Alignment explanation
Indices: 15937686--15938072 Score: 400
Period size: 147 Copynumber: 2.5 Consensus size: 156
15937676 CCTAGATGCC
* *
15937686 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * *
15937751 TTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGC
66 TTGTGG-AGCAGGACCA-CAGCACGAAG-GGGGGACCGGGCCAATCCCCAGCTTACGCATTATGC
* *
15937816 CTCTTCGGTCAG-CTCAATGCCCGTACGCT
128 CTCTTC-GACAGACTCAATGCCCGCACGCT
* * * * ** * * * * *
15937845 CGTTTCATGGGTTGACCTATGCATACGGTGTTCATTCCCA-GTCTAAGATCGAACTGTACTGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGG
* * * *
15937909 G-T-T--ATC--G---ACAGCACGAAGGGGGGACCGGGCCAATCCCCGGCTTACGCGTTTTGCCT
65 GTTGTGGAGCAGGACCACAGCACGAAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCT
* * *
15937965 CTTCGACCGACTGAGTGCCCGCACGCT
130 CTTCGACAGACTCAATGCCCGCACGCT
*
15937992 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
15938057 TTGTGGTAGCAGGACC
66 TTGTGG-AGCAGGACC
15938073 GATAGCGGGA
Statistics
Matches: 176, Mismatches: 39, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
146 6 0.03
147 99 0.56
148 10 0.06
149 2 0.01
152 3 0.02
154 3 0.02
157 1 0.01
158 1 0.01
159 48 0.27
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGAGCAGGACCACAGCACGAAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTC
TTCGACAGACTCAATGCCCGCACGCT
Found at i:15938221 original size:26 final size:26
Alignment explanation
Indices: 15938185--15938235 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938175 TGACTTAGGC
*
15938185 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
15938211 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
15938236 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:15938713 original size:26 final size:26
Alignment explanation
Indices: 15938684--15938736 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938674 GTTAGCTTAG
15938684 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15938710 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15938736 G
1 G
15938737 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15939447 original size:26 final size:26
Alignment explanation
Indices: 15939418--15939470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15939408 GTTGACTTAG
*
15939418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15939444 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15939470 G
1 G
15939471 ATTGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15939732 original size:159 final size:158
Alignment explanation
Indices: 15939516--15939943 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 158
15939506 ACAGCACGCT
* ** *
15939516 GGGGGGACCGGGTTGATCCCCGGCTTGTGAATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
1 GGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
** * * * *
15939581 CCGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGATAGAG
66 CCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCACAGC-GGATAGAG
* ** * *
15939645 GGTTGTGGCAGCGGGACCGGCAGCATGA-A
130 GGTTGTGGCAGCAGGACCAACAACA-CACA
* * *
15939674 GAGGGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACG
1 G-GGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* * * * *
15939739 CTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAGCGGATTGA
65 CCCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCACAGCGGATAGA
* *
15939803 GGGTTGTGGCAGTAGGATCAACAACACACA
129 GGGTTGTGGCAGCAGGACCAACAACACACA
* * * * * * *
15939833 GGGGGGACCAGGTCAATCCCTGGCTTGCGCGTTCTGCCTCTCCGGTCGGCTGGGCACCCGCAC-C
1 GGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * *
15939897 CTCATTTTGTGGGTTCGCTTAGGCATACGGAGTTCATTTCATGTCTA
66 C-CGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTA
15939944 CGCATACAGA
Statistics
Matches: 224, Mismatches: 40, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
157 3 0.01
158 92 0.41
159 122 0.54
160 7 0.03
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.24
Consensus pattern (158 bp):
GGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
CCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCACAGCGGATAGAGG
GTTGTGGCAGCAGGACCAACAACACACA
Found at i:15939905 original size:158 final size:159
Alignment explanation
Indices: 15939444--15939934 Score: 508
Period size: 158 Copynumber: 3.1 Consensus size: 159
15939434 CCCAGTCTAA
* * * * * * * * *
15939444 GCATACAGAGTTCATTCCTAGTCTAAGAT-TGAACTAGACTGAGAGTTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCTGGATTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
15939508 AGCACGCTGGGGGGACCGGGTTGATCCCCGGCTTGTGAATTCTGCCTCTCCGGTCGGCTGAGCGC
66 AGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
** * *
15939573 CCGCACGCC-CGTTTCATGGCTTGGCTTAG
131 CCGCAC-CCTCGTTTTGTGGGTTAGCTTAG
* * ** * * * *
15939602 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGATAGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGAGCTGGATTGAGGGTTGTGGCAGCAGGATCGA
* * * * *
15939665 CAGCATGA-AGAGGGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAG
65 CAGCA-CACAG-GGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAG
* *
15939729 CGCCCGCACGCTCGTTTTGTGGGTTAACTTAG
128 CGCCCGCACCCTCGTTTTGTGGGTTAGCTTAG
* *
15939761 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGC-GGATTGAGGGTTGTGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCTGGATTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
15939825 AACACACAGGGGGGACCAGGTCAATCCCTGGCTTGCGCGTTCTGCCTCTCCGGTCGGCTGGGCAC
66 AGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
15939890 CCGCACCCTCATTTTGTGGGTTCGCTTAG
131 CCGCACCCTCGTTTTGTGGGTTAGCTTAG
15939919 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
15939935 TCATGTCTAC
Statistics
Matches: 267, Mismatches: 58, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 138 0.52
159 120 0.45
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCTGGATTGAGGGTTGTGGCAGCAGGATCGAC
AGCACACAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACCCTCGTTTTGTGGGTTAGCTTAG
Found at i:15940691 original size:26 final size:26
Alignment explanation
Indices: 15940641--15940693 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15940631 GTTGACTTAG
* *
15940641 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15940667 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15940693 G
1 G
15940694 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15941020 original size:26 final size:26
Alignment explanation
Indices: 15940983--15941035 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15940973 GTTGGCCTAG
15940983 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15941009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15941035 G
1 G
15941036 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15941940 original size:17 final size:17
Alignment explanation
Indices: 15941918--15941951 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15941908 AGGATGCTAA
15941918 CATGGGATTATACAAAT
1 CATGGGATTATACAAAT
15941935 CATGGGATTATACAAAT
1 CATGGGATTATACAAAT
15941952 TACAATCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
CATGGGATTATACAAAT
Found at i:15945505 original size:26 final size:26
Alignment explanation
Indices: 15945469--15945521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15945459 GTTGACTTAG
15945469 GCATACCGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
* *
15945495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
15945521 G
1 G
15945522 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:15946123 original size:184 final size:184
Alignment explanation
Indices: 15945812--15946181 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
15945802 GTTGACTTAG
* *
15945812 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCTGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCTGGATCGATA
*
15945877 GCACGCAGGGGGGATCGGGACAATCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTGAGCGCC
66 GCACGCAGGGGGGATCGGGACAATCCCCGGCTTACACATTCTACCTCTCCAGCCGACTGAGCGCC
* * * *
15945942 TGCATGGTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
15945996 GCATACGGAGTTCATTCCCAAT-TCAAGATCGGATCGGACCGAGGGTTGCGACAGCAT-GATTGG
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCGGATCAGACCGAGGGTTGCGACAGC-TGGATCGA
* * * ** ** *
15946059 TAGCACGCAGGGGGGATCGGGCCTATCCCTGGCTTACGTATTCTACCTCTCC-GATTGGCTGAGC
64 TAGCACGCAGGGGGGATCGGGACAATCCCCGGCTTACACATTCTACCTCTCCAG-CCGACTGAGC
* * * *
15946123 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGTATATGAAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
15946180 GC
1 GC
15946182 CCCAGTCAGA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 157 0.98
185 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCTGGATCGATA
GCACGCAGGGGGGATCGGGACAATCCCCGGCTTACACATTCTACCTCTCCAGCCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:15952544 original size:26 final size:26
Alignment explanation
Indices: 15952514--15952565 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15952504 TTGACTTAGC
15952514 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
15952540 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
15952566 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:15952860 original size:159 final size:159
Alignment explanation
Indices: 15952663--15953076 Score: 487
Period size: 159 Copynumber: 2.6 Consensus size: 159
15952653 CGGTCGGCTG
* * *
15952663 AGCACCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * * *
15952728 AGTCGGATCGAGGGTTGTTACAGCGGGACCGACAGCACGTA-GAGAGGGATCGAGCCGATCCTCG
66 AGTCGAATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGGAG-GGGACCAAGCCGATCCTCG
15952792 ACTTGCACATTATGCCTC-CTCGATCGACTC
130 ACTTGCACATTATGCCTCTC-CGATCGACTC
* * * **
15952822 AGCACCCGTACGTTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCACCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * * *
15952885 CAGACCGAATCGAGGGTTATGGCAGCAGGATCGATAGCACGCAGGAGGGGACCAAGTCGATCCTC
65 CAG-TCGAATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGGAGGGGACCAAGCCGATCCTC
* * * * *
15952950 GGCTTGCGCATTCTGCCTCTCCGGTCGACTG
129 GACTTGCACATTATGCCTCTCCGATCGACTC
*
15952981 AGCACCCGCAC-TCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
1 AGCACCCGCACGT-TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
15953045 CAGTCGAACCGAGGGTTGTGGCAGTAGGACCG
65 CAGTCGAATCGAGGGTTGTGACAGCAGGACCG
15953077 GCAGTGGGAT
Statistics
Matches: 212, Mismatches: 36, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
158 7 0.03
159 195 0.92
160 10 0.05
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
AGCACCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGAATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGGAGGGGACCAAGCCGATCCTCGA
CTTGCACATTATGCCTCTCCGATCGACTC
Found at i:15953229 original size:26 final size:26
Alignment explanation
Indices: 15953199--15953251 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15953189 GTTGACTTAG
15953199 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15953225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15953251 G
1 G
15953252 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15954134 original size:26 final size:26
Alignment explanation
Indices: 15954104--15954156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15954094 GTTGACTTAG
*
15954104 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15954130 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15954156 G
1 G
15954157 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15954661 original size:159 final size:159
Alignment explanation
Indices: 15954348--15954819 Score: 389
Period size: 159 Copynumber: 3.0 Consensus size: 159
15954338 GTAGCAGGAC
* * * * * *
15954348 CGACAGCGGGATCGACAGCACGTAGAGAGGGATCAGGCTGATCCTCGGCTTACGTATTATGCCTC
1 CGACAGCAGGATCGACAGCACGCAGAGAGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTC
* *
15954413 TCCGATCGACTGAGTGCCCGCACGCTCATTTTGTGGATTGACTTAGGCATACGGAGTTCATCCCC
66 TCCGATCGACTGAGGGCCCACACGCTCATTTTGTGGATTGACTTAGGCATACGGAGTTCATCCCC
*** *
15954478 AGTCTAAGATTGGACCGGATCGAGGGTTA
131 AGTCTAAGACCAGACCGGACCGAGGGTTA
* * * *
15954507 CGACAGCATGATCGACAGCACGCAGGGGGGGACCAGG-TCGATCCCCGACTTACGCATTCTGCCT
1 CGACAGCAGGATCGACAGCACGCAGAGAGGGACCAGGCT-GATCCCCGACTTACGCATTATGCCT
* * * * * *
15954571 CTCCGGTCGACTGCGGGCCCACACGC-CTATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAT-T
65 CTCCGATCGACTGAGGGCCCACACGCTC-ATTTTGTGGATTGACTTAGGCATACGGAGTTCATCC
* *
15954634 CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTA
129 CCA-GTCTAAG-ACCAGACCGGACCGAGGGTTA
* ** * * * * * * * * **
15954666 TGGTAGCGGGATTGAC-GTTACGTAGAGGGGGATCAAGCCGATCCCCGACTTTTGCATTATGCCT
1 CGACAGCAGGATCGACAG-CACGCAGAGAGGGACCAGGCTGATCCCCGACTTACGCATTATGCCT
* * * * * * * ** * * *
15954730 CTCCGGTTGGCTCAGTGCCCGA-ATGCTCGTTTCATGGGTTGACTTAGACATACGGAGTTCATTC
65 CTCCGATCGACTGAGGGCCC-ACACGCTCATTTTGTGGATTGACTTAGGCATACGGAGTTCATCC
* *
15954794 CCAGTCTAAGATCAGACTGGACCGAG
129 CCAGTCTAAGACCAGACCGGACCGAG
15954820 TGTTGTGGCA
Statistics
Matches: 247, Mismatches: 56, Indels: 20
0.76 0.17 0.06
Matches are distributed among these distances:
158 9 0.04
159 232 0.94
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CGACAGCAGGATCGACAGCACGCAGAGAGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTC
TCCGATCGACTGAGGGCCCACACGCTCATTTTGTGGATTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGACCAGACCGGACCGAGGGTTA
Found at i:15954803 original size:318 final size:318
Alignment explanation
Indices: 15954131--15954806 Score: 730
Period size: 330 Copynumber: 2.1 Consensus size: 318
15954121 CCAGTCTAAG
* * * * ** *
15954131 CATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGATCGAGTGTTGCGGTAGCAGGATTGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAGGATCGACAG
* * * * ** *
15954196 CACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCC
66 CACGCAGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCC
* * * * *
15954261 GCACGCTCGTTTCGTGGGTTGGCTTGGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCGGGA
131 ACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGA
* *
15954326 CCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGAGGGATCAGGCTGATC
196 CCGAGGGTTATGGT----------A-AGCGGGATCGACAGCACGTAGAGAGGGATCAAGCCGATC
* * * * * **
15954391 CTCGGCTTACGTATTATGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTTGTGGATTGACT
250 CCCGACTTACGCATTATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACT
*
15954456 TAGG
315 TAGA
* * * * *
15954460 CATACGGAGTTCATCCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGACAGCATGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAGGATCGACAG
** * **
15954525 CACGCAGGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGCGGGCC
66 CACGCA-GGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACC
*
15954590 CACACGC-CTATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-
130 CACACGCTC-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CG
* * *
15954653 GGACCGAGGGTTATGGT-AGCGGGATTGAC-GTTACGTAGAGGGGGATCAAGCCGATCCCCGACT
193 GGACCGAGGGTTATGGTAAGCGGGATCGACAG-CACGTAGAGAGGGATCAAGCCGATCCCCGACT
** * * * * * *
15954716 TTTGCATTATGCCTCTCCGGTTGGCTCAGTGCCCGAATGCTCGTTTCATGGGTTGACTTAGA
257 TACGCATTATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACTTAGA
15954778 CATACGGAGTTCATTCCCAGTCTAAGATC
1 CATACGGAGTTCATTCCCAGTCTAAGATC
15954807 AGACTGGACC
Statistics
Matches: 290, Mismatches: 53, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
317 1 0.00
318 112 0.39
329 60 0.21
330 116 0.40
331 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (318 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAGGATCGACAG
CACGCAGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCC
ACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGA
CCGAGGGTTATGGTAAGCGGGATCGACAGCACGTAGAGAGGGATCAAGCCGATCCCCGACTTACG
CATTATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACTTAGA
Found at i:15954883 original size:318 final size:314
Alignment explanation
Indices: 15954131--15954989 Score: 842
Period size: 318 Copynumber: 2.7 Consensus size: 314
15954121 CCAGTCTAAG
* * * * *
15954131 CATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGATCGAGTGTTGCGGTAGCAGGATTGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGATCGAGTGTTGCGGCAGCA-TATTGACAG
* * * ** *
15954196 CACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCC
64 CACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
* * *
15954261 GCACGCTCGTTTCGTGGGTTGGCTTGGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCGGGA
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC-GGA
* *
15954326 CCGAGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGAGGGATCAGGCTGATC
193 CCGAGGGTTATGGT------------AGCGGGATCGACAGCACGTAGAGAGGGATCAAGCCGATC
* * * * * **
15954391 CTCGGCTTACGTATTATGCCTCTCCGATCGACTGAGTGCCCGCACGCTCATTTTGTGGATTGACT
246 CCCGACTTACGCATTATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACT
*
15954456 TAGG
311 TAGA
* * * * * *
15954460 CATACGGAGTTCATCCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGACAGCATGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGATCGAGTGTTGCGGCAGCAT-ATTGACAG
* * * * * *
15954525 CACGCAGGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGCGGGCC
64 CACGCA-GGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * *
15954590 CACACGC-CTATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
128 CGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CG
* * * *
15954654 GACCGAGGGTTATGGTAGCGGGATTGAC-GTTACGTAGAGGGGGATCAAGCCGATCCCCGACTTT
191 GACCGAGGGTTATGGTAGCGGGATCGACAG-CACGTAGAGAGGGATCAAGCCGATCCCCGACTTA
* * * * * * *
15954718 TGCATTATGCCTCTCCGGTTGGCTCAGTGCCCGAATGCTCGTTTCATGGGTTGACTTAGA
255 CGCATTATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACTTAGA
* * * *
15954778 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGTGTTGTGGCAGTCATATTGAAAG
1 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGTGTTGCGGCAG-CATATTGACAG
* * * * * * *
15954843 TACACAGGAGGGGAGCGGGTCGGTCTCTGACTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCGCC
64 CACGCAGG-GGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * * * *
15954908 TGCATGCTCGTTTCGTGGGTTGGCTTAGGCGTACGAAGTTCATTCCATGTCTAA-ACCCAGCCGA
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CGG
* *
15954972 ACTGAGGGTTGTGGTAGC
192 ACCGAGGGTTATGGTAGC
15954990 AGGACTGGCA
Statistics
Matches: 434, Mismatches: 86, Indels: 32
0.79 0.16 0.06
Matches are distributed among these distances:
317 27 0.06
318 227 0.52
319 4 0.01
329 57 0.13
330 118 0.27
331 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (314 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGTGTTGCGGCAGCATATTGACAGCA
CGCAGGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCG
AGGGTTATGGTAGCGGGATCGACAGCACGTAGAGAGGGATCAAGCCGATCCCCGACTTACGCATT
ATGCCTCTCCGATCGACTCAGTGCCCGAACGCTCATTTCATGGATTGACTTAGA
Found at i:15955155 original size:26 final size:26
Alignment explanation
Indices: 15955119--15955171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15955109 GTTGACTTAG
15955119 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
15955145 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15955171 G
1 G
15955172 ATCGTACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15956525 original size:184 final size:184
Alignment explanation
Indices: 15956271--15956612 Score: 445
Period size: 184 Copynumber: 1.9 Consensus size: 184
15956261 ACCACGCAAA
* * * * * * *
15956271 GGGGGACCGGCCTGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCGCGAT
1 GGGGGACCGGCCTGATCCCCGACCTACGCATTATACCTCTCCGACCGACTGAGCACCCGCACGAT
* * * *
15956336 TGTTTCATGGGTTGACTTAGGCGTACATAGTTCATCCCTAGT-CTACGCATACGGAGTTCATTCC
66 TGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-AGTACTAAGCATACGGAGATCATTCC
* * *
15956400 CAGTCTAAGATCGGACTGGATTGAGGGTTATGGCAGCAAGATCGGTAGCATGCAG
130 CAATCTAAGATCAGACTGGATCGAGGGTTATGGCAGCAAGATCGGTAGCATGCAG
* * * *
15956455 GGGGGACCGGGCC-GATCCCCGGCCTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGC
1 GGGGGACC-GGCCTGATCCCCGACCTACGCATTATACCTCTCCGACCGACTGAGCACCCGCACGA
* ** * *
15956519 TTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATTACTAAGCATACGGAGATCATTCC
65 TTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGTACTAAGCATACGGAGATCATTCC
15956584 CAATCTAAGATCAGACTGGATCGAGGGTT
130 CAATCTAAGATCAGACTGGATCGAGGGTT
15956613 GCGACAGCAG
Statistics
Matches: 133, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
183 2 0.02
184 127 0.95
185 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
GGGGGACCGGCCTGATCCCCGACCTACGCATTATACCTCTCCGACCGACTGAGCACCCGCACGAT
TGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGTACTAAGCATACGGAGATCATTCCC
AATCTAAGATCAGACTGGATCGAGGGTTATGGCAGCAAGATCGGTAGCATGCAG
Found at i:15956591 original size:26 final size:26
Alignment explanation
Indices: 15956540--15956592 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15956530 GTTGGCTTAG
* * *
15956540 GCATATGGAGTTCATTCCATTACTAA
1 GCATACGGAGATCATTCCAATACTAA
15956566 GCATACGGAGATCATTCCCAAT-CTAA
1 GCATACGGAGATCATT-CCAATACTAA
15956592 G
1 G
15956593 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAATACTAA
Found at i:15957262 original size:158 final size:156
Alignment explanation
Indices: 15956775--15957276 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 156
15956765 CCCAGTCTAA
* ** * * *
15956775 GCATATGGAGTTCATTCTCA-ATCTAAGATCAGATCGGAGGGAGGGTTGCGGCAGTAAGATC-AG
1 GCATATGGAGTTCATTC-CATGTCTAAGATCA-ATCGGACCGAGGGTTGAGGCAGCAGGATCGA-
* * * * * *
15956838 TAGCACGCAGGGGGTACCGGGCCGGTCCCTAGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCA
63 CAGCACGAAGGGGG-ACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * *
15956903 CCCGTAAGCCCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
15956933 GCATAGGGAGTTCATTCTATGTCTAAGCCA-CAGTCGGACCAAGGGTTGTGGCAGCGGGACCGAC
1 GCATATGGAGTTCATTCCATGTCTAAG--ATCAATCGGACCGAGGGTTGAGGCAGCAGGATCGAC
* * * * * * * *
15956997 AGCACGCAGAGGAGGATCGGGTCGATCCCTGCCTTGCGTATTATGCCTCTCCGACCGGCTCAGCA
64 AGCACG-A-AGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* *
15957062 CCCGCCCGCTCGTTTCATGGGTTGACTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
15957092 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGATCGAGGGTTGAGGCAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATC-AATCGGACCGAGGGTTGAGGCAGCAGGATCGAC
* * *
15957156 AGCACGTAAGGGGGACCAGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCGC
64 AGCACG-AAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* *
15957221 TCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15957250 GCATATGAAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
15957277 CCCCAGCCAG
Statistics
Matches: 277, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 141 0.51
159 123 0.44
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAATCGGACCGAGGGTTGAGGCAGCAGGATCGACAG
CACGAAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15957294 original size:158 final size:159
Alignment explanation
Indices: 15956839--15957311 Score: 540
Period size: 158 Copynumber: 3.0 Consensus size: 159
15956829 TAAGATCAGT
* * * * *
15956839 AGCACGCAG-GGGGTACCGGGCCGGTCCCTAGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCA
1 AGCACGCAGAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * * * * *
15956903 CCCGTAAGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCACAGTC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
** *
15956968 GGACCAAGGGTTGTGGCAGCGGGACCGAC
131 GGACTGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * *
15956997 AGCACGCAGAGGAGGATCGGGTCGATCCCTGCCTTGCGTATTATGCCTCTCCGACCGGCTCAGCA
1 AGCACGCAGAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * ** * *
15957062 CCCGCCCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAAT
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGT
* *
15957126 CGGA-TCGAGGGTTGAGGCAGCAGGATCGAC
130 CGGACT-GAGGGTTGTGGCAGCAGGACCGAC
* * * *
15957156 AGCACGTA-AGGGGGACCAGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCG
1 AGCACGCAGAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * * * *
15957220 CTCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
*
15957285 AGACTGAGGGTTGTGGCAGCAGGACCG
131 GGACTGAGGGTTGTGGCAGCAGGACCG
15957312 GTAGCGAGAT
Statistics
Matches: 254, Mismatches: 56, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 126 0.50
159 123 0.48
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
GGACTGAGGGTTGTGGCAGCAGGACCGAC
Found at i:15957688 original size:26 final size:26
Alignment explanation
Indices: 15957650--15957702 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15957640 GTTGAGATAG
*
15957650 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15957676 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15957702 G
1 G
15957703 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15959869 original size:158 final size:158
Alignment explanation
Indices: 15959388--15959889 Score: 504
Period size: 158 Copynumber: 3.2 Consensus size: 158
15959378 CCTAGACTAA
* * * * *
15959388 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAGGGTTCTGGCAGTACGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTCTGGCAGCAGGATCGAC
* * * * * * *
15959452 AGTACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAACAC
65 AGCACGCAGAGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
*
15959517 CCACACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * * * *
15959546 GCATAGGGAGTTCATTCGATGCCTAAGCCCCAGCCGGACCGAGGGTTTTGGTAGCGGGATCGGCA
1 GCATATGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTCTGGCAGCAGGATCGACA
** * * * * * * **
15959611 GCACGCAGAGAGGGATTTGGCCCATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGTGC
66 GCACGCAGAG-GGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
* ** *
15959676 CCGCACGCTCATTTTTTGGGTTGACTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
15959705 GCATATGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGTGGCACCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTCTGGCAGCAGGATCGAC
* * * *
15959769 AGCACGTAGAGGGGATCAAGCCGATCCTCAGCTTGCGCATTCTGTCTCTCTGACCGGCTGAGCAC
65 AGCACGCAGAGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
* * * *
15959834 CCGTACGCTTGTTTCGTGGGTTGGCTAAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
15959863 GTATATGGGGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
15959890 CATATGGAGT
Statistics
Matches: 265, Mismatches: 75, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
157 5 0.02
158 137 0.52
159 121 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTCTGGCAGCAGGATCGACA
GCACGCAGAGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15959895 original size:26 final size:26
Alignment explanation
Indices: 15959865--15959915 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15959855 TGGCTAAGGT
* *
15959865 ATATGGGGTTCATTCCATGTCTAAGC
1 ATATGGAGTTCATTCCACGTCTAAGC
*
15959891 ATATGGAGTTCATTCCCCGTCTAAG
1 ATATGGAGTTCATTCCACGTCTAAG
15959916 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCACGTCTAAGC
Found at i:15960115 original size:26 final size:26
Alignment explanation
Indices: 15960086--15960138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15960076 GTTGACTTAG
15960086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15960112 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15960138 G
1 G
15960139 ATCTAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15961687 original size:26 final size:26
Alignment explanation
Indices: 15961635--15961690 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15961625 TGGGTTGGCT
***
15961635 TAAGCATACAAAGTTCATTCTGTGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
*
15961661 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
15961687 TAAG
1 TAAG
15961691 ATCGTACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:15961864 original size:26 final size:26
Alignment explanation
Indices: 15961835--15961887 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15961825 GTTGGCTTAG
15961835 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15961861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15961887 G
1 G
15961888 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15961886 original size:197 final size:195
Alignment explanation
Indices: 15961604--15962057 Score: 597
Period size: 197 Copynumber: 2.3 Consensus size: 195
15961594 TGGCCGGTTA
* * * * **
15961604 AGCACCTGCACGCTCATTTCATGGGTTGGCTTAAGCATACAAAGTTCATTCTGTGTCTAAGCATA
1 AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
* *
15961669 CGAAGTTCATTCCCAGTCTAAGATCGTACTGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAAG
66 CGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAAG
* ****
15961734 ATCGACAACACGTAAGGGGGGATCGGGCTTG-TCCTCAG-CTTACGCATTCTGCCTCTTTGGTCG
131 ATCGACAACACGT-AGGGGGGATCGGG-TCGATCC-CAGACTTACGCATTCTGCCTC-TCCACCG
15961797 ACTG
192 ACTG
** * * *
15961801 AGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
* ** *
15961866 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGACCAGTAGCAGG
66 CGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAAG
* * ** **
15961931 ATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCACCGGTTG
131 ATCGACAACACGTAGGGGGGATCGGGTCGATCCCAGACTTACGCATTCTGCCTCTCCACCGACTG
*
15961996 AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTACATGTCTAAGC
1 AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
15962058 CCCAGTCGAA
Statistics
Matches: 221, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
195 65 0.29
196 31 0.14
197 125 0.57
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (195 bp):
AGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
CGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAAG
ATCGACAACACGTAGGGGGGATCGGGTCGATCCCAGACTTACGCATTCTGCCTCTCCACCGACTG
Found at i:15962218 original size:26 final size:26
Alignment explanation
Indices: 15962188--15962240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15962178 GTTGACTTAG
*
15962188 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15962214 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15962240 G
1 G
15962241 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15962887 original size:184 final size:185
Alignment explanation
Indices: 15962543--15962901 Score: 465
Period size: 184 Copynumber: 1.9 Consensus size: 185
15962533 GTACAAAGTC
** ** * *
15962543 CATTCCCAATCTAAGATAAGACCGGACCAAGGGTTTTGGTAGCAGGATCGATAGACCGTAGGGGG
1 CATTCCCAATCTAAGATAAGACCAAACCAAGGGTTGCGGTAGCAGGATCGACAGACCGCAGGGGG
* * * * ** * *
15962608 GGACCGGGCCGATCCTCGACTTGCGCATTCTACCTTTTTGGTCGGCTAAGCGCCCGCACGCTCAT
66 GGACCGGGCCGATCCCCGACTTACGCACTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCCCAT
15962673 TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTT
131 TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTT
*
15962728 CATTCCCAATCTAAGAT-TGAACCAAACCAAGGGTTGCGGTAGCAGGATCGACAG-CACGCA-GG
1 CATTCCCAATCTAAGATAAG-ACCAAACCAAGGGTTGCGGTAGCAGGATCGACAGAC-CGCAGGG
* * * *
15962790 GGGGACTGGGCCGATCCCCGGCTTACGCACTCTGCCTCTCCGGCCGGCTGAGC-CCCTGCACGCC
64 GGGGACCGGGCCGATCCCCGACTTACGCACTCTACCTCTCCGGCCGGCTAAGCGCCC-GCACGCC
* **
15962854 CTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
15962902 CCCCGCCAGA
Statistics
Matches: 149, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 3 0.02
184 97 0.65
185 49 0.33
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (185 bp):
CATTCCCAATCTAAGATAAGACCAAACCAAGGGTTGCGGTAGCAGGATCGACAGACCGCAGGGGG
GGACCGGGCCGATCCCCGACTTACGCACTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCCCAT
TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTT
Found at i:15963774 original size:26 final size:26
Alignment explanation
Indices: 15963744--15963796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15963734 GCTGACTTAG
*
15963744 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15963770 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15963796 G
1 G
15963797 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15964064 original size:159 final size:159
Alignment explanation
Indices: 15963804--15964270 Score: 496
Period size: 158 Copynumber: 3.0 Consensus size: 159
15963794 AAGATTGGAT
* * * * *
15963804 CAGACC-AGGGTTGTGGTAGTATGATCGACAGTACGTAG-GGGGGA-CCAGGTCGATCCCCGACT
1 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGATCC-GGCCGATCCCCGACT
* * * * *
15963866 TGCGCATTCTACCTCTCCGGCCGGCTGAGCTCCCACACGCCCGTTTCATGGGTTGGCTTAGGCAT
65 TGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * *
15963931 AGGGAGTTCATTCGATGTCTAAGCCCCAGC
130 ATGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * *
15963961 CAGACTGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGAGGGGGATCCGGCCCATCCCCGGCTT
1 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGATCCGGCCGATCCCCGACTT
* * * * * ** *
15964026 GCACATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTTTTGGGTTGACTTAGGCATA
66 GCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
* ** *
15964091 TGG-GTTCATTCCCA-ATCTAAGATCGAAC
131 TGGAGTTCATT-CCATGTCTAAGCCCCAAC
* * * * *
15964119 CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGA-GGGGATCAGGCCGGTCCTCGACTT
1 CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGATCCGGCCGATCCCCGACTT
* * * * * * * *
15964183 GCGCACTCTGTCTCTCCGACCGACTGAGCACCCGTACGCTTGTTTCGTGGGTTGGCTAAGGTATA
66 GCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
15964248 TGGAGTTCATTCCATGTCTAAGC
131 TGGAGTTCATTCCATGTCTAAGC
15964271 ATATGGAGTT
Statistics
Matches: 250, Mismatches: 54, Indels: 11
0.79 0.17 0.03
Matches are distributed among these distances:
157 80 0.32
158 92 0.37
159 76 0.30
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGATCCGGCCGATCCCCGACTT
GCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
TGGAGTTCATTCCATGTCTAAGCCCCAAC
Found at i:15964256 original size:158 final size:158
Alignment explanation
Indices: 15963777--15964269 Score: 508
Period size: 157 Copynumber: 3.1 Consensus size: 158
15963767 TAAGCATACA
* * * * * * *
15963777 GAGTTCATTCCCAGTCTAAGATTGGATCAGACC-AGGGTTGTGGTAGTATGATCGACAGTACGTA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
* * * * * * *
15963841 GGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCTCCCACACGC
66 GAGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* *
15963906 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 TCGTTTCATGGGTTGGCTTAGGCATATG
* ** * * * *
15963934 GAGTTCATT-CGATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGATCGACAGCACGC
1 GAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * * * * * *
15963998 AGAGGGGGATCCGGCCCATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGCGCCCGCAC
65 AGA-GGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC
* ** *
15964063 GCTCATTTTTTGGGTTGACTTAGGCATATG
129 GCTCGTTTCATGGGTTGGCTTAGGCATATG
* * *
15964093 G-GTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
* * * * * *
15964157 GAGGGGATCAGGCCGGTCCTCGACTTGCGCACTCTGTCTCTCCGACCGACTGAGCACCCGTACGC
66 GAGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* * * *
15964222 TTGTTTCGTGGGTTGGCTAAGGTATATG
131 TCGTTTCATGGGTTGGCTTAGGCATATG
15964250 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
15964270 CATATGGAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 11
0.78 0.19 0.03
Matches are distributed among these distances:
156 2 0.01
157 96 0.36
158 92 0.35
159 76 0.29
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCA
GAGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATATG
Found at i:15964275 original size:26 final size:26
Alignment explanation
Indices: 15964245--15964295 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15964235 TGGCTAAGGT
*
15964245 ATATGGAGTTCATTCCATGTCTAAGC
1 ATATGGAGTTCATTCCACGTCTAAGC
*
15964271 ATATGGAGTTCATTCCCCGTCTAAG
1 ATATGGAGTTCATTCCACGTCTAAG
15964296 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCACGTCTAAGC
Found at i:15964483 original size:26 final size:26
Alignment explanation
Indices: 15964453--15964505 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15964443 GTTGACTTAG
15964453 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15964479 GCATATGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15964505 G
1 G
15964506 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15964752 original size:157 final size:158
Alignment explanation
Indices: 15964522--15964820 Score: 388
Period size: 157 Copynumber: 1.9 Consensus size: 158
15964512 TCGGACCAAA
* * * * * *
15964522 GGTTGTGGCAGCGGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTG
1 GGTTGTGGCAGCGGGATCGACAGCACACAGCGGGGACCGGGCCGATCCCCAGCTTGCACATTATG
* * * * *
15964587 CCTCTCCGACCGACTGAGCGCCCTCACGCCCGTTTCATGGGTTGGCTT-GGCATG-GGAGTTCAT
66 CCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATGTGGAGTTCAT
15964650 TCCACA-TCTAAGCCCCAGTTGAATCGAG
131 TCC-CAGTCTAAGCCCCAGTTGAATCGAG
* * * * **
15964678 GGTTGTGGTAGCGGGATTGGCAGCACACAGACGGGGACCGGGTCGATCCCTGGCTTGCACATTAT
1 GGTTGTGGCAGCGGGATCGACAGCACACAG-CGGGGACCGGGCCGATCCCCAGCTTGCACATTAT
* *
15964743 GCCTCTCCGACCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATGTGGAGTTCA
65 GCCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATGTGGAGTTCA
15964808 TTCCCAGTCTAAG
130 TTCCCAGTCTAAG
15964821 ATTGGACCAG
Statistics
Matches: 120, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
156 25 0.21
157 69 0.57
158 8 0.07
159 18 0.15
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
GGTTGTGGCAGCGGGATCGACAGCACACAGCGGGGACCGGGCCGATCCCCAGCTTGCACATTATG
CCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATGTGGAGTTCAT
TCCCAGTCTAAGCCCCAGTTGAATCGAG
Found at i:15965759 original size:158 final size:158
Alignment explanation
Indices: 15965452--15966031 Score: 470
Period size: 158 Copynumber: 3.6 Consensus size: 158
15965442 CCACCCGTTC
* * * * * * * ** * *
15965452 GATCCCGGGCTTTCGCATCCTGCCTCTCTGGTCAGTTGAGCATCCGCATGCTCGTTTCGTGGGTA
1 GATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * * * * *
15965517 GACTTAGGCATACGGAGTTCACTCCAAGTCAAAG-ATCAGA-CTAGACTGAAGATTGTGGCAGCA
66 G-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGATC-AGACCGAGGGTTGTGGCAGCA
* * *
15965580 GGATCGGTAGCACATAAAGGGGATCGGGCT
129 GGATCGGCAGCACGTAGAGGGGATCGGGCT
* * * * *
15965610 GATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCCCGTTACGTGGGTT
1 GATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
** * * *
15965675 AGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGG
66 -GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGGCAGCAG
*
15965739 GACCGGCAGCACGTAGAGGGGGATCGGG-T
130 GATCGGCAGCACGTAGA-GGGGATCGGGCT
** * * * *
15965768 CGATCCCCGGCTTACGTATTATGCCTCTCCGGCCTGCTCAGCGCCCGCCCGCACGCTCGTTTCGT
1 -GATCCCCGGCTTACACATTCTGCCTCTCCGGCC-GGT-TGAG--CGCCCGCACGCTCGTTTCGT
** ** * *
15965833 GGGTTGACTTAGGTGTACAGAGTTCATTCCCA-GTCTAAG-ATTAGATCGGACCGAGGGTTTTGG
61 GGGTTG-CTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGG
* * * * *
15965896 CAGTAGGATCGACAGCACGTAGGGGGGACCGGGCC
124 CAGCAGGATCGGCAGCACGTAGAGGGGATCGGGCT
* * * * * * * * *
15965931 GATCCTCGGCTTACACATTCTACCTTTGCGGCCGGCTAAGCGCCCGCACGCTCATTTCATGAGTT
1 GATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
15965996 GGCTTAGGCATACAGAGTTCATTCCGTGTCTAAGCA
66 -GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
15966032 TACAGAGTTC
Statistics
Matches: 330, Mismatches: 76, Indels: 31
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 157 0.48
159 44 0.13
160 3 0.01
161 3 0.01
162 38 0.12
163 80 0.24
164 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGTGGCAGCAGG
ATCGGCAGCACGTAGAGGGGATCGGGCT
Found at i:15966033 original size:26 final size:26
Alignment explanation
Indices: 15966003--15966055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15965993 GTTGGCTTAG
**
15966003 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15966029 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15966055 G
1 G
15966056 ATCGTACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15966229 original size:26 final size:26
Alignment explanation
Indices: 15966200--15966252 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15966190 GTTGGCTTAG
15966200 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15966226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15966252 G
1 G
15966253 ATCCGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15966251 original size:197 final size:194
Alignment explanation
Indices: 15965902--15966421 Score: 568
Period size: 197 Copynumber: 2.7 Consensus size: 194
15965892 TTGGCAGTAG
* * * * * * *
15965902 GATCGACAGCACGTAGGGGGGACCGGGCCGAT-CCTCGGCTTACACATTCTACCTTTGCGGCCGG
1 GATCGACAGCACG-AAGGGGGACCGGGCTGATCCCT-GACTTACGCATTCTACCTCT-CCGCCGA
* * * * *
15965966 CTAAGCGCCCGCACGCTCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCGTGTCTAAGC
63 CTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
15966031 ATACAGAGTTCATTCCCAGTCTAAGAT-CG-TACTAGA-CTGAGGGTTGCGGTAGCAGGACCAGT
128 ATACAGAGTTCATTCCCAGTCTAAGATCCGAT-C-AGATC-GAGGGTTGCGGCAGCAGGACCAGT
*
15966093 AGCAA
190 ACCAA
* * *
15966098 GATCGACAGCATGCAAGGGGGGATCC-GGCTTG-T-CCTCGGCTTACGCATTCTACCTCTCTGGC
1 GATCGACAGCACG-AA-GGGGGA-CCGGGC-TGATCCCT-GACTTACGCATTCTACCTCTC-CGC
* * * * * * *
15966160 TGACTGAGTGCTCGTATACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
60 CGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* *
15966225 AGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGATCGAGGGTTGCGGCAGCAGGACCAGT
125 AGCATACAGAGTTCATTCCCAGTCTAAGATCCGATCAGATCGAGGGTTGCGGCAGCAGGACCAGT
* *
15966290 TCCAG
190 ACCAA
* * * * **
15966295 GATCGATAGCACGTAGGGGGACCGGGCTGATCCCTGACTTGCGCATTCTACCTTTCCGCCGGTTG
1 GATCGACAGCACGAAGGGGGACCGGGCTGATCCCTGACTTACGCATTCTACCTCTCCGCCGACTG
*
15966360 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 AGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
15966422 CCCAGTCGGA
Statistics
Matches: 272, Mismatches: 42, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
194 64 0.24
195 28 0.10
196 18 0.07
197 154 0.57
198 7 0.03
199 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (194 bp):
GATCGACAGCACGAAGGGGGACCGGGCTGATCCCTGACTTACGCATTCTACCTCTCCGCCGACTG
AGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
CAGAGTTCATTCCCAGTCTAAGATCCGATCAGATCGAGGGTTGCGGCAGCAGGACCAGTACCAA
Found at i:15966582 original size:26 final size:26
Alignment explanation
Indices: 15966552--15966604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15966542 GTTGACTTAG
*
15966552 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15966578 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15966604 G
1 G
15966605 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15967083 original size:26 final size:26
Alignment explanation
Indices: 15967053--15967105 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15967043 GTTGGCTTAG
15967053 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
15967079 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15967105 G
1 G
15967106 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15967316 original size:196 final size:196
Alignment explanation
Indices: 15966982--15967471 Score: 590
Period size: 196 Copynumber: 2.5 Consensus size: 196
15966972 GATCGGGTCA
* * * * * * *
15966982 ATCCTCGGCTTGCGCATTCTGCCTTTTTGGTCGGCTAAGCGCCCGTACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* *
15967047 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
* * * **
15967112 CCGGACCGAGGGTTGCAGTAGCAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGATCGGGTT
131 CCGGACCGAAGGTTGCAGCAGCAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCC
15967177 G
196 G
* * * * * *
15967178 GTCCCCGGCTTGTGCATTCTACCTCTCTGGCCGACTGAGCGCCCGCACGATCATTTCATGGGTTC
1 ATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * * * *
15967243 GTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCCTTCCCAATCTATGATCGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
* * * * **
15967308 CTGGACCGAAGGTTGCGGCAGCAGGACCAGTAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCC
131 CCGGACCGAAGGTTGCAGCAGCAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCC
15967373 G
196 G
* * ** * * **
15967374 ATCCCTGAC-T-TGCATGTTCTGCCTCTC-CATCGGTTGAGTGCCCGCACGCTCATTTTGTGGGT
1 ATCCCCGGCTTGTGCA--TTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
15967436 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15967472 CCCAGTCGAA
Statistics
Matches: 246, Mismatches: 46, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
194 4 0.02
195 61 0.25
196 181 0.74
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (196 bp):
ATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
CCGGACCGAAGGTTGCAGCAGCAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCC
G
Found at i:15967632 original size:26 final size:26
Alignment explanation
Indices: 15967602--15967654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15967592 GTTGACTTAG
*
15967602 GCATACGGAGTTCA-TCCCTAATCTAA
1 GCATACAGAGTTCATTCCC-AATCTAA
15967628 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15967654 G
1 G
15967655 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15968131 original size:26 final size:26
Alignment explanation
Indices: 15968101--15968156 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15968091 TGGGTTGGCT
*
15968101 TAAGCATACGGAATTCATT-CCATGTC
1 TAAGCATACGGAATCCATTCCCA-GTC
*
15968127 TAAGCATACGGAGTCCATTCCCAGTC
1 TAAGCATACGGAATCCATTCCCAGTC
15968153 TAAG
1 TAAG
15968157 ATCAAACTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAATCCATTCCCAGTC
Found at i:15969438 original size:26 final size:26
Alignment explanation
Indices: 15969388--15969440 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15969378 GTTGGCTTAG
* *
15969388 GCATACGGTGTTCATCCCTATTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15969414 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
15969440 G
1 G
15969441 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15969777 original size:159 final size:159
Alignment explanation
Indices: 15969414--15969915 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 159
15969404 CCTATTCTAA
* * * *
15969414 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACTGAAGGTTGC-AGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATTGGACTGAGGGTT-CTGGCAGCAGGATCGA
* * * * *
15969477 CAGCATGCAGA-GGGGATCGAGCTGATCCAT-GGCTTATGCATTCTGCCTCTCCGG-TTGGCTGA
64 TAGCATGCAGAGGGGGATCGGGCTGATCC-TCAGCTTGTGCATTATGCCTCTCCGGCTT-GCTGA
* * ** *
15969539 GCGCCCACACGCCCGTTTCATGAGTT-AGCTTAG
127 GCGCCCGCACGCTCGTTTTGTGGGTTGA-CTTAG
* * * * * * *
15969572 GCATAGGGAGTTCATTCCATGTCTTAG--CGCCAGTCGGACCGAGGGTTCTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATCG-GA-TTGGACTGAGGGTTCTGGCAGCAGGATCGA
* * * *
15969635 TAGCATGCAGAGGGGGATCGGGTTGATCCTCAACTTGTGCATTATGCCTCTCCGGCTTGCTCAGT
64 TAGCATGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTATGCCTCTCCGGCTTGCTGAGC
15969700 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
* ** *
15969731 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTGGACTGAGGGTTATGATAGCAGGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATTGGACTGAGGGTTCTGGCAGCAGGATCGAT
* * * * * * * ** * * * * *
15969795 AGCACGCAG-GGGGGACCAGACCGGTCCCCAGCTTGCACATTTTGCCTTTTCGACTGGCTGAGCG
65 AGCATGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTATGCCTCTCCGGCTTGCTGAGCG
*
15969859 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTTGTGGGTTGACTTAG
15969889 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15969916 CATATGGAGT
Statistics
Matches: 277, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 143 0.52
159 116 0.42
160 7 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATTGGACTGAGGGTTCTGGCAGCAGGATCGATA
GCATGCAGAGGGGGATCGGGCTGATCCTCAGCTTGTGCATTATGCCTCTCCGGCTTGCTGAGCGC
CCGCACGCTCGTTTTGTGGGTTGACTTAG
Found at i:15969872 original size:697 final size:696
Alignment explanation
Indices: 15968687--15969964 Score: 1619
Period size: 697 Copynumber: 1.8 Consensus size: 696
15968677 AGTCTATTGA
* * * *
15968687 CTTAGGCATACGAAGTTCATCCCCAGTCTAAGTATATAGAGTTCATTCTCATTCTAAGATCAGAC
1 CTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
15968752 CAGACCGAGGGTTGCGTAGCAGGATCGACAACGCGTAGGAGGGACCGAGCTGATCCCCGACTGGT
66 CAGACCGAAGGTTGCGCAGCAGGATCGACAACACGCAGGAGGGACCGAGCTGATCCACGACTGAT
* * * * * * *
15968817 GCATTCTGCCTCTCCGGCCGGTTGAGTGCCCATACGCCCATTTCGTGGGTTGGGTTAGGCATAGG
131 GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCATTTCATGAGTTAGCTTAGGCATAGG
* * * * *
15968882 GAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGATGATTGTGGCAGTAGGACTGACAACAAATA
196 GAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGATTCTGGCAGCAGGACCGACAACAAACA
** *
15968947 GAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAACTCCCGTACG
261 GAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAACTCCCGCACG
* *
15969012 CTCGTTTCGTGGGTTGACTTTGACATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGATTGAG
326 CTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACTGAG
* * * ** * *
15969077 GGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGTCCTGGTCGATCCCCGGCTTGCAGATTCTG
391 GGTTACGATAGCAGGATCGACAGCACGCAGGGGGGACCAGACCGATCCCCAGCTTGCACATTCTG
* * * *
15969142 CCTCTCCGGCCGACTAAGCGCCCACATGCTCGTTTCATGGGTTAGCTTAGGCATATAGAGTTCTT
456 CCTCTCCGACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCAT
* * *
15969207 TCCATGTCTAAGCATACGGAGTTCATTCCTAGGCTAAGATCGGATCG-GACAGAGGGTTACGATA
521 TCCATGTCTAAGCATACGGAGTTCATTCCCAGGCTAAGATCGGACCGAAAC-GAGGGTTACGATA
15969271 GCAGGACCAATAGCAGGATCAGCAACACGCAAGAGGGCTCGGGCTGATCCTCAGTTTATGCATTC
585 GCAGGACCAATAGCAGGATCAGCAACACGCAAGAGGGCTCGGGCTGATCCTCAGTTTATGCATTC
15969336 TGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGG
650 TGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGG
** * * *
15969383 CTTAGGCATACGGTGTTCATCCCTATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * * * *
15969448 TGGACTGAAGGTTGCAGCAGCAGGATCGACAGCATGCA-GAGGGGATCGAGCTGATCCATGGCTT
66 CAGACCGAAGGTTGC-GCAGCAGGATCGACAACACGCAGGA-GGGACCGAGCTGATCCACGACTG
** *
15969512 ATGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCACACGCCCGTTTCATGAGTTAGCTTAGGCATA
129 ATGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCATTTCATGAGTTAGCTTAGGCATA
* * * * * * * *
15969577 GGGAGTTCATTCCATGTCTTAGCGCC-AGTCGGACCGAGGGTTCTGGCAGCGGGACCGATAGCAT
194 GGGAGTTCATTCCATGTCTAAGC-CCTAGCCAGACCGAGGATTCTGGCAGCAGGACCGACAACAA
* * * * * *
15969641 GCAGAGGGGGATCGGGTTGATCCTCAACTTGTGCATTATGCCTCTCCGGCTTGCTC-AGTGCCCG
258 ACAGAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAACT-CCCG
* * * * * **
15969705 CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
322 CACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGAC
* * * *
15969770 TGAGGGTTATGATAGCAGGATTGATAGCACGCAGGGGGGACCAGACCGGTCCCCAGCTTGCACAT
387 TGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGGACCAGACCGATCCCCAGCTTGCACAT
* * * * * * * ** * *
15969835 TTTGCCTTTTCGACTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGT
452 TCTGCCTCTCCGACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACAGAGT
* *
15969900 TCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAAACGAGGGTTACG
517 TCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGGCTAAGATCGGACCGAAACGAGGGTTACG
15969965 GCAATAGGAC
Statistics
Matches: 481, Mismatches: 96, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
696 71 0.15
697 406 0.84
698 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (696 bp):
CTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAAGGTTGCGCAGCAGGATCGACAACACGCAGGAGGGACCGAGCTGATCCACGACTGAT
GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCATTTCATGAGTTAGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGATTCTGGCAGCAGGACCGACAACAAACA
GAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCTGGCTCAACTCCCGCACG
CTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACTGAG
GGTTACGATAGCAGGATCGACAGCACGCAGGGGGGACCAGACCGATCCCCAGCTTGCACATTCTG
CCTCTCCGACCGACTAAGCGCCCACACGCTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGGCTAAGATCGGACCGAAACGAGGGTTACGATAG
CAGGACCAATAGCAGGATCAGCAACACGCAAGAGGGCTCGGGCTGATCCTCAGTTTATGCATTCT
GCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGG
Found at i:15969925 original size:26 final size:26
Alignment explanation
Indices: 15969889--15969941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15969879 GTTGGCTTAG
15969889 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15969915 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15969941 G
1 G
15969942 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15970291 original size:26 final size:26
Alignment explanation
Indices: 15970255--15970307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15970245 GTTGACTTAG
*
15970255 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15970281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15970307 G
1 G
15970308 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15972350 original size:26 final size:26
Alignment explanation
Indices: 15972313--15972365 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972303 GTTGACTTAG
*
15972313 GCATATGAAGTTCATCCCTAGTCTAA
1 GCATATGAAGTTCATCCCTAATCTAA
*
15972339 GCATAT-AGAGTTCATTCCTAATCTAA
1 GCATATGA-AGTTCATCCCTAATCTAA
15972365 G
1 G
15972366 ATCAGATTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCTAATCTAA
Found at i:15972604 original size:342 final size:342
Alignment explanation
Indices: 15971950--15972675 Score: 843
Period size: 342 Copynumber: 2.1 Consensus size: 342
15971940 CGTTCGTACG
*
15971950 CTCGTTTCGTGGGTTGACTCAGGCATGCGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTC
1 CTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTC
* ** * * * *
15972015 TTGGTCTAAGGTCAGACCAGACTGAGGGTTACGACAGTAGGATCGATAGCACGCAGGGGGACCAG
66 CTAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCAACAGCACGCAGGGGGACCAG
* * *
15972080 GTCGATCCCTGGCTTGCGCATTCTACCTATCCGACCGACTGAGCACCCGCACGCCCGTTTCATGG
131 GGCGATCCCTGGCTTGCGCATTCTACCTATCCGACCGACTGAGCACCCACACACCCGTTTCATGG
* * *
15972145 GTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGATTGTGGCAGC
196 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGATCGTGGCAGC
* * * * * *
15972210 AGGACTGACAGCACGTAGAGGGGCACTGGGCCGGTCCCCGACTTGCGCATTATGCCTTTC-GACC
261 AGGACCGACAGCACGCAAAGGGGCACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACC
*
15972274 GGCTCAGTGCCCGAACA
326 GGCTCAGCGCCCGAACA
* * * * * *
15972291 CTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCTAGTCTAAGCATATAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTC
* * * * *
15972356 CTAATCTAAGATCAGATTC-GACCGAGGGTTGCGATAGTAGGATCAACAGTACGCAGGAGGGATC
66 CTAATCTAAGATCAGA-CCAGACCGAGGGTTACGACAGTAGGATCAACAGCACGCAGG-GGGACC
* * * * * * * * *
15972420 -GGGCAGATCCCTGGCTTGGGCATTGTGCCTCTTCGATCGGCTGGGCGCCCACACACCCGTTTCA
129 AGGGC-GATCCCTGGCTTGCGCATTCTACCTATCCGACCGACTGAGCACCCACACACCCGTTTCA
* *
15972484 TGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CGAGACAGAGGGTCGTGG
193 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG-GACAGAGGATCGTGG
* ** * * * * *
15972548 CTGTGGGACCGACAGCATGCAAATGGGG-ACCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTC
257 CAGCAGGACCGACAGCACGCAAA-GGGGCACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTC
* * *
15972612 TGACCGGCTCAGCGCCTGTACG
321 TGACCGGCTCAGCGCCCGAACA
* * *
15972634 C-CTGTTTAGTGGGTTGACTGAGGCATACGGAGTTCATTCCCA
1 CTC-GTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCCCA
15972676 CTCTTAGATC
Statistics
Matches: 318, Mismatches: 60, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
341 107 0.34
342 156 0.49
343 55 0.17
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
CTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTC
CTAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCAACAGCACGCAGGGGGACCAG
GGCGATCCCTGGCTTGCGCATTCTACCTATCCGACCGACTGAGCACCCACACACCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGATCGTGGCAGC
AGGACCGACAGCACGCAAAGGGGCACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACC
GGCTCAGCGCCCGAACA
Found at i:15972861 original size:158 final size:157
Alignment explanation
Indices: 15972476--15972861 Score: 357
Period size: 158 Copynumber: 2.4 Consensus size: 157
15972466 GCCCACACAC
* * * * *
15972476 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-CGAGACAGAG
1 CCGTTTCGTGGGTTGGC-TAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCG-GACCGAG
* *** * ** * * **
15972540 GGTCGTGGCTGTGGGACCGACAGCATGCAAATGGGGACCGGGTCGATCCCTGGCTTGTGCATTAT
64 GGTTGCAACAGCAGGACCGACAGCACGCAAAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTAT
* * * *
15972605 GCCTCTCTGACCGGCTCAGCGCCTGTACG
129 ACCTCTCTGACCAGCTCAGCACCCGTACG
* * * **
15972634 CCTGTTTAGTGGGTTGACTGAGGCATACGGAGTTCATTCCCAC-TCTTAGATCC-GATCGGACCG
1 CC-GTTTCGTGGGTTGGCT-AGGCATACGGAGTTCATT-CCACGTCTAAGCCCCAG-TCGGACCG
* * * *
15972697 ATGGTTGCAACAGCAGGATCGACAGCACG-TAAGGGGGATCGGGTCGATCCCCAGCTTGTGCATT
62 AGGGTTGCAACAGCAGGACCGACAGCACGCAAAGGGGGACCGGGTCGATCCCCAGCTTGTGCATT
* * * * *
15972761 CTACCTCTCTGGCTAGCTGAGCACCCGTATG
127 ATACCTCTCTGACCAGCTCAGCACCCGTACG
*
15972792 CTCGTTTCGTGGGTTGGCGTAGGCATACGGAGTTCATTCCACGTCTAAGCCCTAGTCGGACCGAG
1 C-CGTTTCGTGGGTTGGC-TAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACCGAG
15972857 GGTTG
64 GGTTG
15972862 TGGCAGTAGG
Statistics
Matches: 178, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 108 0.61
159 61 0.34
160 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
CCGTTTCGTGGGTTGGCTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGTCGGACCGAGGG
TTGCAACAGCAGGACCGACAGCACGCAAAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTATAC
CTCTCTGACCAGCTCAGCACCCGTACG
Found at i:15973472 original size:26 final size:26
Alignment explanation
Indices: 15973436--15973488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973426 GTTGGCTTAG
15973436 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15973462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15973488 G
1 G
15973489 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15973598 original size:11 final size:11
Alignment explanation
Indices: 15973558--15973600 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
15973548 CCCGGAGCAC
15973558 CATCG-CGGAG
1 CATCGTCGGAG
*
15973568 CATCGCCGGAG
1 CATCGTCGGAG
15973579 CATCGTCGGAG
1 CATCGTCGGAG
*
15973590 CATCATCGGAG
1 CATCGTCGGAG
15973601 AGCCTAACCG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 5 0.17
11 25 0.83
ACGTcount: A:0.21, C:0.30, G:0.35, T:0.14
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15975050 original size:26 final size:26
Alignment explanation
Indices: 15975016--15975068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975006 GTTGACTTAG
* *
15975016 GCATTCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15975042 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15975068 G
1 G
15975069 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15975548 original size:26 final size:26
Alignment explanation
Indices: 15975518--15975570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975508 GTTAACTTAG
15975518 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15975544 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15975570 G
1 G
15975571 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15975982 original size:26 final size:26
Alignment explanation
Indices: 15975952--15976004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975942 GTTGGCTTAG
*
15975952 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15975978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15976004 G
1 G
15976005 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15976365 original size:25 final size:26
Alignment explanation
Indices: 15976331--15976382 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15976321 GTTGACTTAG
15976331 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15976356 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15976382 G
1 G
15976383 ATCAGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15976733 original size:159 final size:157
Alignment explanation
Indices: 15976356--15976735 Score: 399
Period size: 159 Copynumber: 2.4 Consensus size: 157
15976346 CCCAGTCTAA
* * * *
15976356 GCATATGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCA-GCCAGACTGAGGGTTGTGATAGCAGGATCGATA
* ** * * *
15976421 GCATACAGGGGGGACCGGGTCGATCCCCAACTTGTTTATTCTGCCTTTCTGGCCGGTTGAGCACC
65 GCATACAGGAGGGACCGGGTCGATCCCCAACTTGTGCATTATGCCTTTCTGGCCGGCTCAGCACC
*
15976486 CACACGCCCATGTCATGGGTTGGCTTAG
130 CACACGCCCATGTCATGGGTTGACTTAG
* * * * *
15976514 GCATAGAGAGTTCATT-CCATGTCTAAGCCA-CAGTCGGA-TCGAGGGTTGTGGTAGCGGGATCG
1 GCATATAGAGTTCATTCCCA-GTCTAAG--ATCAGCCAGACT-GAGGGTTGTGATAGCAGGATCG
* * * * ** *
15976576 GTAGCATGCAGAGAGGGATCGGGTCGATCTCCGGCTTGTGCATTATGCCTCTTC-GGTCGGCTCA
62 ATAGCATACAG-GAGGGACCGGGTCGATCCCCAACTTGTGCATTATGCCT-TTCTGGCCGGCTCA
* * * * *
15976640 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
125 GCACCCACACGCCCATGTCATGGGTTGACTTAG
*
15976673 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGATAGTAGGATCGA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCAG-CCAGACTGAGGGTTGTGATAGCAGGATCGA
15976736 CAGTACATAC
Statistics
Matches: 177, Mismatches: 35, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 55 0.31
159 110 0.62
160 8 0.05
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATATAGAGTTCATTCCCAGTCTAAGATCAGCCAGACTGAGGGTTGTGATAGCAGGATCGATAG
CATACAGGAGGGACCGGGTCGATCCCCAACTTGTGCATTATGCCTTTCTGGCCGGCTCAGCACCC
ACACGCCCATGTCATGGGTTGACTTAG
Found at i:15976867 original size:26 final size:25
Alignment explanation
Indices: 15976831--15976899 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 25
15976821 GTTGGCTTAG
15976831 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
15976857 GCATTCGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
* *
15976883 GCATCCAGAGTTCATTC
1 GCATACGGAGTTCATTC
15976900 TACCTCTCCG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.03
26 33 0.89
27 3 0.08
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15977172 original size:26 final size:26
Alignment explanation
Indices: 15977136--15977188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15977126 GTTGACTTAG
15977136 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15977162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15977188 G
1 G
15977189 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15977663 original size:159 final size:155
Alignment explanation
Indices: 15977162--15977664 Score: 442
Period size: 159 Copynumber: 3.2 Consensus size: 155
15977152 CCCAGTCTAA
* * * *
15977162 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCGACAGTAAGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAG-AGGATCGAT
* * * * * * * *
15977226 AGCACGCAGAGGGGACCGGGCCAATCCCCGGCTTGCCCATTCTGCCTCTCGGGCTGACTGAGTGC
63 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCTGGTTG-GTAAG-GC
15977291 C-CGCACG-TCCGTTTCATGGGTTGGCTTAG
126 CTCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * ** * *
15977320 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGTGAGATCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGAG-GATCGAT
* * * * * *
15977384 AGCACGCAGAGGGGTACCGGGCCGAACCCTGGCTTGCGCATTATGCCTCT-TCGGTCGGCTCAAC
63 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCT-GGTTGG-T-AAG
* * * *
15977448 GCCT-GAACACTCGATTCATGGGTTGACTTAG
124 GCCTCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
15977479 GCATACAGAGTTCATTCTCAATCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG-AGGATCGATA
* * ** * * *
15977544 GCACGTAAGGGGGGACCGAGCCGATCTGTGGCTTGCACATTCTACTTCTCTGGTTGGTTAGGCTC
64 GCACG-CAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCTGGTTGGTAAGGC-C
*
15977609 TCGCACGCTCGTTTCTTGGGTTGGCTTAG
127 TCGCACGCTCGTTTCATGGGTTGGCTTAG
15977638 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15977665 CATACGGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 35
0.75 0.16 0.10
Matches are distributed among these distances:
157 6 0.02
158 62 0.23
159 193 0.71
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGAGGATCGATAGC
ACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCTGGTTGGTAAGGCCTCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15977674 original size:26 final size:26
Alignment explanation
Indices: 15977638--15977716 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
15977628 GTTGGCTTAG
15977638 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15977664 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15977690 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
15977716 G
1 G
15977717 ATCGGACTGG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 1 0.02
26 51 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15979153 original size:158 final size:157
Alignment explanation
Indices: 15978854--15979428 Score: 430
Period size: 158 Copynumber: 3.6 Consensus size: 157
15978844 TACCACCCGT
* * * * * * * * *
15978854 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCATCCACATGCTCGTTTCGTGGG
1 TCGATCCTCGGCTTGCGCATTCT-CCTCTCCGATCGGCTGAGTACCCACACGCTCGTTTCATGGG
* * * * * * ** * *
15978919 TTGACATAGGCATACAGAGTTCATCCCCA-GTCTAA-GATCAGACCGGA-CAGAGGGTTGCGGCA
65 TTGGCTTAGGCATACGGATTTCAT-TCCATGTCTAAGGACCAGATAGAATCA-AGGGTTGCGGTA
* * *
15978981 GTAAGATC-AGCAGCACGCAGGGGGGACCGAG
128 GGAGGACCGA-CAGCACGCAGGGGGGACCG-G
* * * * * * *
15979012 CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTACCTACACGCCCGTTTCATGGG
1 TCGATCCTCGGCTTGCGCATTCT-CCTCTCCGATCGGCTGAGTACCCACACGCTCGTTTCATGGG
* * * * *
15979077 TTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGGCCCTG-TAGGATCAAGGGTTGTGGTAGC
65 TTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGGACCAGATAGAATCAAGGGTTGCGGTAG-
*
15979141 GA-GACCGACAGCACTCAGAGGGGGACCGG
129 GAGGACCGACAGCACGCAG-GGGGGACCGG
* * * * * * *
15979170 ATCGATCCTCGGCTTGCGCATTATGCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTAT-GTGG
1 -TCGATCCTCGGCTTGCGCATTCTCCTCTCCGATCGGCTGAGTACCCACACGCTCGTT-TCATGG
* ** * * * *
15979234 GTTGACTTAGGCATACAAATTTCATTCCA-GTCT-ATGATCAGATCGAATCGAGGGTTGCGGTAG
64 GTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGGACCAGATAGAATCAAGGGTTGCGGTAG
* * * *
15979297 TAGGATCGACAGCATGTAGGTGGGGACCGGG
129 GAGGACCGACAGCACGCAGG-GGGGACC-GG
* * * * *
15979328 TCGATCCTCGACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCACCCACACGCTCATTTCATAGG
1 TCGATCCTCGGCTTGCGCATTCT-CCTCTCCGATCGGCTGAGTACCCACACGCTCGTTTCATGGG
* *
15979393 TTGGCTTAGGCATACGGAGTCCATTCCATGTCTAAG
65 TTGGCTTAGGCATACGGATTTCATTCCATGTCTAAG
15979429 CATAGGGAGT
Statistics
Matches: 323, Mismatches: 78, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
156 6 0.02
157 65 0.20
158 211 0.65
159 40 0.12
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
TCGATCCTCGGCTTGCGCATTCTCCTCTCCGATCGGCTGAGTACCCACACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGATTTCATTCCATGTCTAAGGACCAGATAGAATCAAGGGTTGCGGTAGGA
GGACCGACAGCACGCAGGGGGGACCGG
Found at i:15979438 original size:26 final size:26
Alignment explanation
Indices: 15979402--15979454 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15979392 GTTGGCTTAG
15979402 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
* *
15979428 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15979454 G
1 G
15979455 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15979588 original size:184 final size:186
Alignment explanation
Indices: 15979319--15979671 Score: 480
Period size: 184 Copynumber: 1.9 Consensus size: 186
15979309 CATGTAGGTG
*
15979319 GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCACCCACACGCTCA
1 GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCA
* *
15979384 TTTCATAGGTTGGCTTAGGCATACGGAGTCCATTCCATGTCTAAGCATAG-GGAGTTCATTCCCA
66 TTTCATAGGTAGGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCAT-GCGGAGTTCATTCCCA
* * *
15979448 GTCTAAGAT-TGGACTGGATCGAGGGTTG-TAGCAGCAGGATTGGCAGCACGCAAAAA
130 GTCTAAGATCAGGACCGGACCGAGGGTTGCT-GCAGCAGGATTGGCAGCACGCAAAAA
* * * * * **
15979504 GGGACCGGGTCGAT-CTCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCTCGTTTG
1 GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCA
** * * * *
15979568 TTTTGTGGGTAGGTTTAGGCATATAGAGTTCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAG
66 TTTCATAGGTAGGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAG
*
15979633 TCTCAGATCAGGACCGGACCGAGGGTTGCTGCAGCAGGA
131 TCTAAGATCAGGACCGGACCGAGGGTTGCTGCAGCAGGA
15979672 CTAGCAACAG
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
183 1 0.01
184 104 0.72
185 39 0.27
186 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (186 bp):
GGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACGCTCA
TTTCATAGGTAGGCTTAGGCATACAGAGTCCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAG
TCTAAGATCAGGACCGGACCGAGGGTTGCTGCAGCAGGATTGGCAGCACGCAAAAA
Found at i:15980162 original size:26 final size:26
Alignment explanation
Indices: 15980126--15980177 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15980116 GTTGACTTAG
*
15980126 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15980152 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15980178 CATTGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15982063 original size:26 final size:26
Alignment explanation
Indices: 15982033--15982085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15982023 GTTGACTTAG
15982033 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15982059 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15982085 G
1 G
15982086 ATCAGACAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15983136 original size:26 final size:26
Alignment explanation
Indices: 15983100--15983152 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15983090 GTTGACTTAG
15983100 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15983126 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15983152 G
1 G
15983153 ATCAGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15984837 original size:26 final size:25
Alignment explanation
Indices: 15984808--15984881 Score: 121
Period size: 26 Copynumber: 2.9 Consensus size: 25
15984798 CGGTCCGATC
*
15984808 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGGATGAACTCCGTA-GCT
15984834 TAGACTGGGGATGAACTCCGTAGCT
1 TAGACTGGGGATGAACTCCGTAGCT
15984859 TAGAACTGGGGATGAACTCCGTA
1 TAG-ACTGGGGATGAACTCCGTA
15984882 ATGCCTAAGT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 6 0.13
26 40 0.87
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (25 bp):
TAGACTGGGGATGAACTCCGTAGCT
Found at i:15985701 original size:26 final size:26
Alignment explanation
Indices: 15985671--15985722 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15985661 CGGTCTGATA
*
15985671 TTAGACTATGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* *
15985697 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
15985723 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:15986736 original size:26 final size:26
Alignment explanation
Indices: 15986707--15986759 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15986697 TTGGTCCGAT
15986707 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15986733 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15986759 C
1 C
15986760 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15987240 original size:26 final size:26
Alignment explanation
Indices: 15987211--15987264 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15987201 GATCTGATCT
*
15987211 TAGATTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
15987237 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
15987263 TA
1 TA
15987265 AGTCATCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:15987556 original size:347 final size:356
Alignment explanation
Indices: 15987022--15987952 Score: 971
Period size: 347 Copynumber: 2.6 Consensus size: 356
15987012 CTGCCAGTGT
* * * * * **
15987022 CGCTGCCACAACCCTCGGTCTGGTTGGGGGTTAGACATGGAATGAACTCCCTATGATTAAGCCAA
1 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15987087 CCCATGAAACGGGGGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * * * *
15987152 CTCAGTCCCTCCTTCGTGCCGTCGATCTTGCTACCAT--AACCTTCAGTCC-GATCTGATCTTAG
131 CTCAGTCCCCCCTACGTGCTGTCGATCCTGC-AGC-TGCAACCCTCAGTCCTG-TCTGATCTTAG
* * * * *
15987214 ATTGGGAATGAACTCCGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCATCCCACAAA
193 ACTGGGAATGAACTCCGTATGCCTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCCACAAA
* * * * * * *
15987279 ACGAGTGTGCGGGTGCTCAGACGACCGA-AGAGGCCGGTCGGAGAGGCATAATGTGCAAGTCGGG
258 ACGAGCGTACGGGTGCTCAGACG-CCGAGACAGGCCGGCCGGAAAGGCATAATGTGCAAGCCAGG
*
15987343 GATCAGCCCGAT-CC-C-GC-TGC-A-GATCT-T-
322 GATCAGCCCGATCCCTCTACGTGCTACGATCTCTC
* * *
15987370 C-CTACCACAACCCTTGGTCCGACTGGGGCTTCGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15987434 CCCACGAAATGAGCGTACGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATC-A
66 CCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * ** *
15987498 GTTCAGTCCCCCCTGCATGCTACCGATCCTACAGCTGCAACCCTC-GATCCTGTCTGATCTTAGA
131 -CTCAGTCCCCCCTACGTGCTGTCGATCCTGCAGCTGCAACCCTCAG-TCCTGTCTGATCTTAGA
* * * * *
15987562 CTGGGAATGAACTCTGTATGCTTAGACTAGGGTTAAACTCTATATGCCTAAGTCAACCCATAAAA
194 CTGGGAATGAACTCCGTATGCCTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCCACAAAA
* * * * * *
15987627 TGAGCGTACGGGTGCTCAGTCGGCTAGACAGGTCGGCCGGAAAGGCATAATGTGGAAGCCAGGGA
259 CGAGCGTACGGGTGCTCAGACGCCGAGACAGGCCGGCCGGAAAGGCATAATGTGCAAGCCAGGGA
15987692 TCAGCCCGATCCCCCTCTACGTGCTACCGATCTCACAGCCGGTC
324 TCAGCCCGAT--CCCTCTACGTGCTA-CGATCT------C--TC
15987736 CTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 C-GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * *
15987801 ACCCACGAAACGAGCGTGCGGGCGCTCAGCC--TGCCGAGAGGCAGAATGCGCAAGCCGGGGACC
65 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGAT-CGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * * *
15987864 GACCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTTCTATCTGATCTTAGA
129 GACTCAGTCCCCCCTACGTGCTGTCGATCCTGCAGCTGCAACCCTCAGTCCTGTCTGATCTTAGA
15987929 CTGGGAAT-AAGCTCCGTATGCCTA
194 CTGGGAATGAA-CTCCGTATGCCTA
15987953 AGTCAACCCA
Statistics
Matches: 472, Mismatches: 80, Indels: 43
0.79 0.13 0.07
Matches are distributed among these distances:
345 1 0.00
346 6 0.01
347 263 0.56
348 2 0.00
350 2 0.00
351 1 0.00
352 1 0.00
353 3 0.01
354 1 0.00
356 5 0.01
365 1 0.00
366 4 0.01
367 94 0.20
368 88 0.19
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (356 bp):
CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CTCAGTCCCCCCTACGTGCTGTCGATCCTGCAGCTGCAACCCTCAGTCCTGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACG
AGCGTACGGGTGCTCAGACGCCGAGACAGGCCGGCCGGAAAGGCATAATGTGCAAGCCAGGGATC
AGCCCGATCCCTCTACGTGCTACGATCTCTC
Found at i:15988111 original size:159 final size:157
Alignment explanation
Indices: 15987730--15988127 Score: 435
Period size: 157 Copynumber: 2.5 Consensus size: 157
15987720 GATCTCACAG
*
15987730 CCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * *
15987795 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCGAGAGGCAGAATGCGCAAGCCGGG
66 AAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCTGCCGAGAGGCAGAATGCGCAAGCCGGG
* * *
15987860 GACCGACCCGGTCCCCCTTACGTGCTG
131 GACCGACCCAGTCCCCCTTACGCGCTA
* * ** * *** **
15987887 TCGATCCTGCTGCTGCAACCCTCAGTTCTATCT-GATCTTAGAC-TGGGAAT-AAGCTCCGTATG
1 CCGGTCCTGCTGCCACAACCCTC-GGTCCGGCTGGGGCTTAGACAT-GGAATGAA-CTCCGTATG
* * * * *
15987949 CCTAAGTCAACCCACGAAATGAGTGTACGGGCATTGAG-CTGGCCGAAGAGGCATAATGCGCAAG
63 CCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCT-GCCG-AGAGGCAGAATGCGCAAG
* * ** **
15988013 CCGGGGATCGACCTAGTCCTTCTCTGTGCGCTA
126 CCGGGGACCGACCCAGTCCCCCT-TACGCGCTA
* *
15988046 CCGGTCCTGCTGCCACAACCCTCGGCCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
*
15988111 AAGCCAACCCATGAAAT
66 AAGCCAACCCACGAAAT
15988128 AGGCATACGG
Statistics
Matches: 190, Mismatches: 42, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.03
157 75 0.39
158 44 0.23
159 63 0.33
160 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (157 bp):
CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAATGAGCGTACGGGCACTCAGCCTGCCGAGAGGCAGAATGCGCAAGCCGGG
GACCGACCCAGTCCCCCTTACGCGCTA
Found at i:15988180 original size:159 final size:157
Alignment explanation
Indices: 15987730--15988214 Score: 426
Period size: 159 Copynumber: 3.1 Consensus size: 157
15987720 GATCTCACAG
*
15987730 CCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* *
15987795 AAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCTGCC-GAGAGGCAGAATGCGCAAGCCG
66 AAGCCAACCCACGAAATAGAGC-TACGGGCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGCCG
* * * *
15987858 GGGACCGACCCGGTCCCCCTTACGTGCTG
129 GGGATCGACCCAGTCCCCCTTACGCGCTA
* * ** * *** **
15987887 TCGATCCTGCTGCTGCAACCCTCAGTTCTATCT-GATCTTAGAC-TGGGAAT-AAGCTCCGTATG
1 CCGGTCCTGCTGCCACAACCCTC-GGTCCGGCTGGGGCTTAGACAT-GGAATGAA-CTCCGTATG
* * ** * * * *
15987949 CCTAAGTCAACCCACGAAAT-GAGTGTACGGGCATTGAGCTGGCCGAAGAGGCATAATGCGCAAG
63 CCTAAGCCAACCCACGAAATAGAG-CTACGGGCGCTCAGC-CGCCGGAGAGGCAGAATGCGCAAG
* ** **
15988013 CCGGGGATCGACCTAGTCCTTCTCTGTGCGCTA
126 CCGGGGATCGACCCAGTCCCCCT-TACGCGCTA
* *
15988046 CCGGTCCTGCTGCCACAACCCTCGGCCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * *
15988111 AAGCCAACCCATGAAATAG-GCATACGGGTGCTCAACCGACCGGAGAGGTAGAATGCGTAAGCCG
66 AAGCCAACCCACGAAATAGAGC-TACGGGCGCTCAGCCG-CCGGAGAGGCAGAATGCGCAAGCCG
* * * * * * *
15988175 AGGATCGGCCCTGTCTCCCTTGCGTGCTG
129 GGGATCGACCCAGTCCCCCTTACGCGCTA
*
15988204 CCGATCCTGCT
1 CCGGTCCTGCT
15988215 ACCGCAACTC
Statistics
Matches: 249, Mismatches: 65, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
156 3 0.01
157 74 0.30
158 61 0.24
159 107 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (157 bp):
CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAATAGAGCTACGGGCGCTCAGCCGCCGGAGAGGCAGAATGCGCAAGCCGGG
GATCGACCCAGTCCCCCTTACGCGCTA
Found at i:15988279 original size:26 final size:26
Alignment explanation
Indices: 15988238--15988290 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15988228 TCCAATCGAT
*
15988238 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
15988264 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15988290 C
1 C
15988291 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15989746 original size:159 final size:159
Alignment explanation
Indices: 15989501--15989916 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 159
15989491 GTCTGATCTA
* * * * * * *** * *
15989501 AGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTGAGCCG
1 AGACTGGGAATGAACTCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGACG
* * * * * * * * * * *
15989565 ATCGGAGAGGCATAATATGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCG
66 ACCAGAAAGGCAGAATACGCAAGTCGGGGATCGACCCGATCACCC-CTATGTGCTGTCGATCCCA
* ** *
15989630 CTACCACAACCCTCGGTTCGATTGGGGCTT
130 CTACCACAACCCTCAGTTCGATCCGAGCTT
* * *
15989660 AGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCA-AC
1 AGAC-TGGGAATGAACTCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGAC
* * *
15989722 AGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCACCCCTATGTGCTGTCGATCCT
65 -GACCAGAAAGGCAGAATACGCAAGTCGGGGATCGACCCGATCACCCCTATGTGCTGTCGATCCC
* * * *
15989787 ACTGCCGCAACCTTCAGTTCGATCCGATCTT
129 ACTACCACAACCCTCAGTTCGATCCGAGCTT
* * * * * *
15989818 AGACTGGGAATGAACTCCCGTATGCCTATGTCAACCCACGAAACTAGTGTGCGGATGCTCAGTCG
1 AGACTGGGAATGAACTCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGACG
*
15989883 ACCAGAGAGGCAGAATACGCAAGTCGGGGATCGA
66 ACCAGAAAGGCAGAATACGCAAGTCGGGGATCGA
15989917 ACGGGTGGTA
Statistics
Matches: 207, Mismatches: 44, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 56 0.27
159 147 0.71
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
AGACTGGGAATGAACTCCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGACG
ACCAGAAAGGCAGAATACGCAAGTCGGGGATCGACCCGATCACCCCTATGTGCTGTCGATCCCAC
TACCACAACCCTCAGTTCGATCCGAGCTT
Found at i:15990486 original size:26 final size:25
Alignment explanation
Indices: 15990444--15990495 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15990434 GGCTCAAACT
15990444 CTTAGACTGGAAGGAACTCCGTATG
1 CTTAGACTGGAAGGAACTCCGTATG
*
15990469 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAAGGAACTCCGTATG
15990495 C
1 C
15990496 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGAAGGAACTCCGTATG
Found at i:15990869 original size:26 final size:26
Alignment explanation
Indices: 15990833--15990885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15990823 CCGGTCCGAT
*
15990833 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
15990859 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15990885 C
1 C
15990886 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:15991072 original size:26 final size:26
Alignment explanation
Indices: 15991043--15991095 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15991033 CTGATCCGAT
*
15991043 CTTAGAC-TGGGATTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15991069 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15991095 C
1 C
15991096 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15991436 original size:159 final size:158
Alignment explanation
Indices: 15991069--15991487 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 158
15991059 ACTCCGTATG
* * *
15991069 CTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTCAGC
* * * ** * ** *
15991134 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATTTGCCATGTGTGCTGTCGATCCT
66 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATTCCCCATGCGTGCTACCGATCCC
* * * *
15991199 GTTGCCTCAACCCTCGGTCCGATCCGAT
131 ATTGCCTCAACCATCGATCCGATCCGAC
* * *
15991227 CTTAGAC-TGGGAATTAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTTTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTCAG
* *
15991291 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCC-ATTCCCCCTCTGCGTGCTACC-AG
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATT-CCCC-ATGCGTGCTACCGA-
* ** *
15991354 TCCCATTGCCAT-AACCATCGATCTGATTGGGC
127 TCCCATTGCC-TCAACCATCGATCCGATCCGAC
* * * ** * *
15991386 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCG-TACGACTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGC-ACTCAG
* * *
15991450 CCGACCAGAGAGGCAGAATGTGCAAGTCGGGGATCGAC
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
15991488 TCGATCCTTC
Statistics
Matches: 215, Mismatches: 39, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 98 0.46
159 111 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATTCCCCATGCGTGCTACCGATCCC
ATTGCCTCAACCATCGATCCGATCCGAC
Found at i:15991595 original size:26 final size:26
Alignment explanation
Indices: 15991544--15991596 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15991534 CTGGTCTGAT
**
15991544 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15991570 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15991596 C
1 C
15991597 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15991941 original size:26 final size:26
Alignment explanation
Indices: 15991912--15991964 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15991902 CCGATCCGAT
*
15991912 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
15991938 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15991964 C
1 C
15991965 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15992441 original size:26 final size:26
Alignment explanation
Indices: 15992412--15992464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15992402 TTGATCCGAT
*
15992412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15992438 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15992464 C
1 C
15992465 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15993363 original size:26 final size:26
Alignment explanation
Indices: 15993312--15993364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15993302 CCGGTTCAAT
**
15993312 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15993338 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15993364 C
1 C
15993365 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15993436 original size:184 final size:183
Alignment explanation
Indices: 15993127--15993711 Score: 622
Period size: 184 Copynumber: 3.1 Consensus size: 183
15993117 TGGCTCAAAC
* * * *
15993127 TCTTAGACTAGGAATCAACTCCGTATGCTTAAACATGGAAAGAACTCCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
** ** * * *
15993192 CATTAAATGAGCGTATGGGCGCTCAGCCGGTTGGAAAGGCAGAATGCTTAAG-TCGGGGATCGGC
65 CACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCT-GGGGATCGGC
* *
15993256 CCAGTCCCCCCTACATGCTGCTGATCCTGCTACCGCAACCCTTGGTCCGGTTCAA
129 CCAGTCCCCCCTGCATGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCAA
* *
15993311 TCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTC-GTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAAC
* * * *
15993375 CCACGAAATGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAC
64 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
* * *
15993440 CC-GATCCCCCCTGCGTGCTACCGATCCTACTACTGGTCCTACTACTGCAACCCTCGGTCCGG-T
129 CCAG-TCCCCCCTGCATGCTGCTGA---T-C--CT-G--CTAC--C-GCAACCCTCGGTCCGGTT
*
15993503 CTGA
181 C-AA
* *
15993507 TCTTAGACTGGGAATGAACTACATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACT-CGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* ** * * *
15993572 AACGAAATGAGCGTGCGGGTACTCAGCCGGTCGTAGAGGCAGAATGCGTAAGCCGGGGACCGGCC
65 CACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCC
* * * ** *
15993637 CAATCCCCCCTGCATGCTG-TCGATCCTACTATCGCAACCCTCGGTCCTATCCAA
130 CAGTCCCCCCTGCATGCTGCT-GATCCTGCTACCGCAACCCTCGGTCCGGTTCAA
15993691 TCTTAGACTGGGAATGAACTC
1 TCTTAGACTGGGAATGAACTC
15993712 CGTACGCCTA
Statistics
Matches: 332, Mismatches: 47, Indels: 45
0.78 0.11 0.11
Matches are distributed among these distances:
183 4 0.01
184 159 0.48
185 3 0.01
187 4 0.01
188 1 0.00
190 4 0.01
191 1 0.00
192 1 0.00
193 5 0.02
195 3 0.01
196 145 0.44
197 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
ACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCC
AGTCCCCCCTGCATGCTGCTGATCCTGCTACCGCAACCCTCGGTCCGGTTCAA
Found at i:15993645 original size:196 final size:196
Alignment explanation
Indices: 15993280--15993667 Score: 530
Period size: 196 Copynumber: 2.0 Consensus size: 196
15993270 ATGCTGCTGA
* * *
15993280 TCCTGCTACCGCAACCCTTGGTCCGGTTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTACTACCGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCTATATGCTTAGAC
* * * * *
15993345 TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGTCGGTCGG
66 TGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCACTCAGCCGGTCGG
* * * *
15993410 AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTACTG
131 AGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTGCATGCTACCGATCCTACTACTG
15993475 G
196 G
* *
15993476 TCCTACTACTGCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTAC-ATATGCTTAG
1 TCCTACTACCGCAACCCTCGGTCCGGTTC-AATCTTAGACTGGGAATGAACT-CTATATGCTTAG
* * *
15993539 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTACTCAGCCGGT
64 AC-TGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCACTCAGCCGGT
* * * **
15993603 CGTAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCAATCCCCCCTGCATGCTGTCGATCCTACTA
128 CGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTGCATGCTACCGATCCTACTA
15993668 TCGCAACCCT
Statistics
Matches: 167, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
195 2 0.01
196 163 0.98
197 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
TCCTACTACCGCAACCCTCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCTATATGCTTAGAC
TGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCATGCGGGCACTCAGCCGGTCGG
AGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTGCATGCTACCGATCCTACTACTG
G
Found at i:15995989 original size:26 final size:26
Alignment explanation
Indices: 15995953--15996005 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15995943 CCGGTTCAAT
*
15995953 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
15995979 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15996005 C
1 C
15996006 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15996178 original size:26 final size:26
Alignment explanation
Indices: 15996149--15996201 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996139 CCGGTCCGAT
15996149 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15996175 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15996201 C
1 C
15996202 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15996257 original size:196 final size:197
Alignment explanation
Indices: 15995921--15996296 Score: 519
Period size: 196 Copynumber: 1.9 Consensus size: 197
15995911 ATGCTGCCGA
* *
15995921 TCTTGCTATCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAATAAACTCTGTATGCTTAGAC
1 TCTTGCTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC
* * * *
15995986 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCAGTCGG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGCCAGCCGG
* **
15996051 AGAGGCAGAATGCGCAAGCT-GGGATCTG-CTTGATCCCCCTCTGCGTGCTACCGATCCTGCTGC
131 AGAGGCAGAATGCACAAGCTGGGGATC-GACCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGC
15996114 TAG
195 TAG
* * *
15996117 TCTTGCTATTGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 TCTTGCTATCGCAACCCTCGA-TCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGA
* **
15996181 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAATC-GAC
65 C-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGCCAG-C
* * *
15996244 CGGAGATGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCTCTGCGTGCT
128 CGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCT
15996297 GTCAAACCTG
Statistics
Matches: 157, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
195 2 0.01
196 130 0.83
197 25 0.16
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (197 bp):
TCTTGCTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGCCAGCCGG
AGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGCT
AG
Found at i:15996478 original size:159 final size:158
Alignment explanation
Indices: 15996174--15996536 Score: 419
Period size: 159 Copynumber: 2.3 Consensus size: 158
15996164 AACTCCGTAT
* **
15996174 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAA
* * * * * *
15996239 TCGACCGGAGATGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCAAAC
65 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTGCCAAAC
* * *
15996304 CTGCTACCGCAACCCTCGGTCCAGTCT-GA
130 CTGCTACCACAACCCTCAGTCC-GACTGGA
* * *
15996333 TCTTAGACCA-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACT-A
1 GCTTAGA-CATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * **
15996396 AGCCGACCGGAGAGGCATAATGCACAAGTCGGGGATCAACTCAGTCCGTCTCTGCGTGCTGCC-A
64 A-CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTGCCAA
** * * * *
15996460 GTCTCGGTGCCACTACCCTCAGTCCGACTGGG
128 ACCT-GCTACCACAACCCTCAGTCCGACTGGA
15996492 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAA
15996537 TGGGCGTGCG
Statistics
Matches: 171, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
158 32 0.19
159 137 0.80
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAAC
CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTGCCAAACC
TGCTACCACAACCCTCAGTCCGACTGGA
Found at i:15996864 original size:140 final size:140
Alignment explanation
Indices: 15996631--15996915 Score: 367
Period size: 140 Copynumber: 2.0 Consensus size: 140
15996621 GCTACCGTAA
* * *
15996631 CCCTCGGTTCAGTCTAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
1 CCCTCGGTTCAATCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
* * * * *
15996696 AGCGTACGGGCGCTCAGCCAGCTGGAGAGGTCGGTTGGAGAGGCATAATGCATAAGCTGA-GGAT
66 AGCATACGGGCGCTCAGCCAGCTAGAGAGGCCGATCGGAGAGGCATAATGCATAAG-TGAGGGAT
* *
15996760 CAGCTCGGTCC
130 CAGCCCGATCC
* * * *
15996771 CCCTCGGTTCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
1 CCCTCGGTTCAATCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
* * * * *
15996836 AGCATGCGGGCGCTTAGCCTA-TTAGAGAGGCCGATCGGAGAGGCATAATGCGTAAGTTAGGGAT
66 AGCATACGGGCGCTCAGCC-AGCTAGAGAGGCCGATCGGAGAGGCATAATGCATAAGTGAGGGAT
15996900 CAGCCCGATCC
130 CAGCCCGATCC
15996911 CCCTC
1 CCCTC
15996916 TGCATGATGC
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
139 2 0.02
140 121 0.98
141 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (140 bp):
CCCTCGGTTCAATCCAATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
AGCATACGGGCGCTCAGCCAGCTAGAGAGGCCGATCGGAGAGGCATAATGCATAAGTGAGGGATC
AGCCCGATCC
Found at i:15997242 original size:159 final size:157
Alignment explanation
Indices: 15996949--15997315 Score: 409
Period size: 159 Copynumber: 2.3 Consensus size: 157
15996939 GGTACTGTTG
* * * * *
15996949 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* ** * * * * * *
15997014 GAAATGAGCATGCAGGTGCTCAGTCGGCCGGAGAGGCAGAATGTACAAGCCGGGGATTGGCCCGA
66 AAAATGAGCATGCAGAAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCAGA
*
15997079 TCCCCATCTGCGTGCTGTCGGTCCCACTA
131 TCCCC-T-TGCGTGCTGTCGATCCCACTA
15997108 CCACAACCTTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCTTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
15997172 CAAAAT-AGGCGTGCTGAAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGGCGGGGATCGGCCA
65 CAAAATGA-GCATGCAGAAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCA
* **
15997236 GGTCCCCTTGCGTGCTGTCGATCCTGCTA
129 GATCCCCTTGCGTGCTGTCGATCCCACTA
* * * ** *
15997265 CCGCAACCTTCACTCCGGCCT-GATCTTAGAC-TAGGAATGAACTCCGTATGC
1 CCACAACCTTCAGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGC
15997316 TTAGACTGGG
Statistics
Matches: 176, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
156 1 0.01
157 56 0.32
158 6 0.03
159 113 0.64
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CCACAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAATGAGCATGCAGAAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCAGA
TCCCCTTGCGTGCTGTCGATCCCACTA
Found at i:15997333 original size:25 final size:26
Alignment explanation
Indices: 15997289--15997339 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
15997279 CCGGCCTGAT
15997289 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15997315 CTTAGACT-GGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15997340 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15997535 original size:26 final size:26
Alignment explanation
Indices: 15997496--15997548 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15997486 CCGATCTGAT
15997496 CTTAGACTGAGAATGAACACCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
* *
15997522 CTTAGACATG-GAATGAACTCCTTATG
1 CTTAGAC-TGAGAATGAACACCGTATG
15997548 C
1 C
15997549 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:15997721 original size:26 final size:26
Alignment explanation
Indices: 15997680--15997732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15997670 CTGGTTCGAT
15997680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15997706 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
15997732 C
1 C
15997733 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15997917 original size:393 final size:391
Alignment explanation
Indices: 15997131--15998095 Score: 1104
Period size: 392 Copynumber: 2.5 Consensus size: 391
15997121 TCCGACTGGG
** * * *
15997131 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGG-CGTGCTGAAGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGACGTGCGGGAGCTCA
* * ** * ** * *
15997195 GCCGACCGGAGAGGCAAAATGCACAAGGCGGGGATCGGCCAGGT-CCCCTTGCGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCGTAAGGCGAGGATTAGCCCGATCCCCCTTGCGTGCTGTCGATC
* * * *
15997259 CTGCTACCGCAACCTTCACTCCGGCCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
130 CTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
15997324 GGATGAACTCTGTATGTCTAAGTCAACCCATGAAAAAAGCGTGCAGGCATTTAATCGATCGGAGA
195 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAAAAAGAGTACAGGCACTCAATCAATCGGAGA
* *
15997389 GGCCGGCCAGAGAGGTAGAATACGTAAGCCGAGGATCGACCGATCCCCCATACGTGCTGTCGATC
260 GGCCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGACCGATCCCCCATACGTGCTGTCGATC
* *** *
15997454 CTGCTACTGGTCCTACTGTTGCAACCCTTGGTCCGATCTGATCTTAGACTGAGAATGAACACCGT
325 CCGCTACTGGTCCTACTACCGCAACCCTTGATCCGATCTGATCTTAGACTGAGAATGAACACCGT
15997519 AT
390 AT
* *
15997521 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGAGCTCAG
* * * *
15997586 GCGGCCGGAGAGGCAGAATGCGTAAGGTGAGGATTAGCCCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGGCCGGAGAGGCAGAATGCGTAAGGCGAGGATTAGCCCGATCCCCCTTGCGTGCTGTCGATCC
* * ** *
15997651 TGCTGCCGTAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
131 TGCTACCGCAACCCTCAATCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
** * * *
15997715 GAGATGAACT-TCGTATGCCTAAGTCAACCCATGAAATGAGATTACGGGCGCTCAATCAATCGGA
195 G-GATGAACTCT-GTATGCCTAAGTCAACCCATGAAAAAAGAGTACAGGCACTCAATCAATCGGA
* * ** *
15997779 GAGGCTGGTCAGAGAGGCAGAATGTGCAAGCC-AGGGATCGACTC-AGTCCCCCCTACGTGCTGT
258 GAGGCCGGCCAGAGAGGCAGAATACGCAAGCCGA-GGATCGAC-CGA-TCCCCCATACGTGCTGT
* * * * * *
15997842 CGATCCCGCTACTGGTCCTGCTACCGTAA-CCTTCGATCTGGTTTGATCTTAGACTGGGAATGAA
320 CGATCCCGCTACTGGTCCTACTACCGCAACCCTT-GATCCGATCTGATCTTAGACTGAGAATGAA
* *
15997906 CTCTGTAT
384 CACCGTAT
* *
15997914 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GA-GTGTACGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTG--CGGGAGCTC
* * * * * * * *
15997977 AGCCAGTCAGAGAGGTAGAATGCGTAAGCCGAGGA-TCGACCGATCCACCTTGCGTGCTGTCGAT
64 AGCCGGCCGGAGAGGCAGAATGCGTAAGGCGAGGATTAGCCCGATCCCCCTTGCGTGCTGTCGAT
* * * *
15998041 CCTACTATCACAACCCTCAATCTGGTCTGATCCTAGACTAGGAATGAACTCCGTA
129 CCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTA
15998096 CGCCTAACTC
Statistics
Matches: 481, Mismatches: 82, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
389 2 0.00
390 88 0.18
391 79 0.16
392 158 0.33
393 154 0.32
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (391 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGAGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGGCGAGGATTAGCCCGATCCCCCTTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
GATGAACTCTGTATGCCTAAGTCAACCCATGAAAAAAGAGTACAGGCACTCAATCAATCGGAGAG
GCCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGACCGATCCCCCATACGTGCTGTCGATCC
CGCTACTGGTCCTACTACCGCAACCCTTGATCCGATCTGATCTTAGACTGAGAATGAACACCGTA
T
Found at i:15997918 original size:26 final size:26
Alignment explanation
Indices: 15997889--15997941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15997879 CTGGTTTGAT
*
15997889 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15997915 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15997941 C
1 C
15997942 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15998326 original size:158 final size:156
Alignment explanation
Indices: 15997914--15998319 Score: 433
Period size: 157 Copynumber: 2.6 Consensus size: 156
15997904 AACTCTGTAT
* **
15997914 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* *
15997979 CC-AGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACCGATCCACCTTGCGTGCTGTCGATCC
65 CCGA-TCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCGATCCACCTTGCGTGCTGTCGATCC
* * *
15998043 TACTATCACAACCCTCAATCTGGTCTGA
129 CACTACCACAACCCTCAATCCGGTCTGA
* * * * *
15998071 TCCTAGACTAGGAATGAACTCCGTACGCCTAA-CTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTACGGGCACTCA
* * * * * * * * * *
15998135 GCTGGTCAAAGAGGCATAATGCGCAAGCCGGGGATAGGCCCGATCC-CCTTCTGTGTGCTGTTGG
64 GCCGATCAGAGAGGCAGAATGCGTAAGCCGGGGAT-CGACCGATCCACC-T-TGCGTGCTGTCGA
* **
15998199 TCCCACTGCCACAACCCTCGGTCCGG-CTGGA
126 TCCCACTACCACAACCCTCAATCCGGTCT-GA
* * * * *
15998230 GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAAC
1 GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
15998295 CGATCAGAGAGGCAGAATGCGTAAG
66 CGATCAGAGAGGCAGAATGCGTAAG
15998320 ATGGGGACCG
Statistics
Matches: 200, Mismatches: 41, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 81 0.41
158 77 0.38
159 40 0.20
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCGATCCACCTTGCGTGCTGTCGATCCCA
CTACCACAACCCTCAATCCGGTCTGA
Found at i:15998340 original size:158 final size:156
Alignment explanation
Indices: 15997914--15998414 Score: 429
Period size: 157 Copynumber: 3.2 Consensus size: 156
15997904 AACTCTGTAT
* **
15997914 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * *
15997979 CC-AGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACCGA-TCCACCTTGCGTGCTGTCGATC
65 CCGA-TCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCC-CCTTGCGTGCTGTCGATC
* * *
15998042 CTACTATCACAACCCTCAATCTGGTCTGA
128 CCACTACCACAACCCTCAATCCGGTCTGA
* * * * *
15998071 TCCTAGACTAGGAATGAACTCCGTACGCCTAA-CTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTACGGGCACTCA
* * * * * * * * * *
15998135 GCTGGTCAAAGAGGCATAATGCGCAAGCCGGGGATAGGCCC-GATCCCCTTCTGTGTGCTGTTGG
64 GCCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAG-TCCCC-T-TGCGTGCTGTCGA
* **
15998199 TCCCACTGCCACAACCCTCGGTCCGG-CTGGA
126 TCCCACTACCACAACCCTCAATCCGGTCT-GA
* * * * *
15998230 GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAAC
1 GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
** * * * * *
15998295 CGATCAGAGAGGCAGAATGCGTAAGATGGGGACCGACCCAGTCCCCACTGCATGCTGCCGATCCT
66 CGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCC-TTGCGTGCTGTCGATCCC
** ** *
15998360 ACTACTGCAACCCTCGGTCTGGT-TCGA
130 ACTACCACAACCCTCAATCCGGTCT-GA
* * *
15998387 TCTTAGATTGGGAATGAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
15998415 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 123 0.46
158 103 0.38
159 41 0.15
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCTTGCGTGCTGTCGATCCCA
CTACCACAACCCTCAATCCGGTCTGA
Done.