Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 104 of 138
Found at i:15998424 original size:26 final size:26
Alignment explanation
Indices: 15998388--15998439 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15998378 CTGGTTCGAT
*
15998388 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15998414 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15998440 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15998925 original size:708 final size:707
Alignment explanation
Indices: 15997521--15999072 Score: 2117
Period size: 708 Copynumber: 2.2 Consensus size: 707
15997511 AACACCGTAT
* *
15997521 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * ** *
15997586 GCGGCCGGAGAGGCAGAATGCGTAAGGTGAGGATTAGCCCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGATGGGGACGA-CCCG-TCCCCCCTGCATGCTGCCGATCC
* * * *
15997651 TGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
129 TACTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * *
15997716 AGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGATTACGGGCGCTCAATCAATCGGAGA
194 AGATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGAGTACGGGCGCTCAACCAATCAGAGA
*
15997781 GGCTGGTCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACTCAGTCCCCCCTACGTGCTGTCGAT
259 GGCTGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACTCAGTCCCCCCTACGTGCTGTCGAT
* * * * *
15997846 CCCGCTACTGGTCCTGCTACCGTAACCTTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCTG
324 CCCGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACAGGGAATGAACTCTG
*
15997911 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGTGCT
389 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCT
* ** * * *
15997976 CAGCCAGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACCGATCCACCTTGCGTGCTGTCGAT
454 CAGCCAGTCAGAGAGGCAGAATGCACAAACCGAGGATCGACCGATCCACCTCGCGTGCTATCGAT
* *
15998041 CCTACTATCACAACCCTCAATCTGGTCTGATCCTAGACTAGGAATGAACTCCGTACGCCTAACTC
519 CCTACTATCACAACCCTCAATCCGGTCTAATCCTAGACTAGGAATGAACTCCGTACGCCTAACTC
* *
15998106 AACCCACGAAACGAGCGTACGGGCACTGAGCTGGTCAAAGAGGCATAATGCGCAAGCCGGGGATA
584 AACCCACGAAACGAGCGTACGGGCACTGAGCTGATCAAAGAGGCATAATGCGCAAGCCAGGGATA
* * * * *
15998171 GGCCCGATCCCCTTCTGTGTGCTGTTGGTCCCACTGCCACAACCCTCGGTCCGGCTGGA
649 GGCCCGATCCCCCTCTGAGTACTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGA
** *
15998230 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * *
15998294 CCGATCAGAGAGGCAGAATGCGTAAGATGGGGACCGACCCAGTCCCCACTGCATGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGATGGGGA-CGACCC-GTCCCCCCTGCATGCTGCCGATCC
* *
15998359 TACTACTGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGG
129 TACTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * * **
15998424 GGATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGGGTACGGGTGCTCAACCGGTCAGAGA
194 AGATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGAGTACGGGCGCTCAACCAATCAGAGA
15998489 GGCTGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACTC-GATCCCCCCTACGTGCTGTCGA
259 GGCTGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACTCAG-TCCCCCCTACGTGCTGTCGA
* * * *
15998553 TCCTGCTGCTGGTCTTGCTACCGTAACCCTCGGTCCGATCTGATCTTAGACAGGGAATGAACTCT
323 TCCCGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACAGGGAATGAACTCT
15998618 GTATGCTTCA-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTG
388 GTATGCTT-AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTG
* * * * * *
15998682 CTCAGCCGGTCGGAGAGGCAGAATGCACAAACTGGGGATCGATCGGTCCACCTCGCGTGCTATCG
452 CTCAGCCAGTCAGAGAGGCAGAATGCACAAACCGAGGATCGACCGATCCACCTCGCGTGCTATCG
* * *** * * * * *
15998747 ATCCTACT-GCTGCAACCCTTGGTCCGAT-TCAATCTTAGACTGGGAATGAACTCTGTATGCCTA
517 ATCCTACTATC-ACAACCCTCAATCCGGTCT-AATCCTAGACTAGGAATGAACTCCGTACGCCTA
* * *
15998810 ACTCAACCCATGAAACGAGCGTACGGGCACTGAGCTGATCGGAA-AGGCATAATGCGCAAGCTAG
580 ACTCAACCCACGAAACGAGCGTACGGGCACTGAGCTGATC-AAAGAGGCATAATGCGCAAGCCAG
* * * * * * *
15998874 GGATCGGTCTGGTCCCCCTCTGAGTACTGTCGGTCCCGCTGCCATAACCCTCGGTCTGGCTAGA
644 GGATAGGCCCGATCCCCCTCTGAGTACTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGA
* * * *
15998938 GCTTAGACATGGGATGAACTCCCTATGCCTAAGCCAACCCATGGAACAGGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* *** * *
15999003 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCTGCATGCTACCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGATGGGGA-CGACCC-GT-CCCCCCTGCATGCTGCCGATC
15999068 CTACT
128 CTACT
15999073 GCTGGTCCTA
Statistics
Matches: 733, Mismatches: 101, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
707 3 0.00
708 610 0.83
709 96 0.13
710 24 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (707 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGATGGGGACGACCCGTCCCCCCTGCATGCTGCCGATCCTA
CTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAG
ATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGAGTACGGGCGCTCAACCAATCAGAGAGG
CTGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACTCAGTCCCCCCTACGTGCTGTCGATCC
CGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCTGATCTTAGACAGGGAATGAACTCTGTA
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
GCCAGTCAGAGAGGCAGAATGCACAAACCGAGGATCGACCGATCCACCTCGCGTGCTATCGATCC
TACTATCACAACCCTCAATCCGGTCTAATCCTAGACTAGGAATGAACTCCGTACGCCTAACTCAA
CCCACGAAACGAGCGTACGGGCACTGAGCTGATCAAAGAGGCATAATGCGCAAGCCAGGGATAGG
CCCGATCCCCCTCTGAGTACTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGA
Found at i:15999049 original size:159 final size:158
Alignment explanation
Indices: 15998628--15999050 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 158
15998618 GTATGCTTCA
* * *
15998628 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGTC
1 ACATGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATC
* * * * * * * *
15998693 GGAGAGGCAGAATGCACAAACTGGGGATC-GATCGGTCCACCTCGCGTGCTATCGATCCTACTGC
66 GGAGAGGCAGAATGCGCAAGCTAGGGATCGGACCGGTCCCCCTCGAGTACTATCGATCCCACTGC
** * * *
15998757 TGCAACCCTTGGTCCGATTCAATCTTAG
131 CACAACCCTCGGTCCGACTCAAGCTTAG
* * * *
15998785 AC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCGTACGGGCACTGAGCTGA
1 ACATGGG-ATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTACGGGCGCTCAGCCGA
* * * * * * *
15998848 TCGGAAAGGCATAATGCGCAAGCTAGGGATCGGTCTGGTCCCCCTCTGAGTACTGTCGGTCCCGC
64 TCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGACCGGTCCCCCTC-GAGTACTATCGATCCCAC
* * *
15998913 TGCCATAACCCTCGGTCTGGCT-AGAGCTTAG
128 TGCCACAACCCTCGGTCCGACTCA-AGCTTAG
* * * * *
15998944 ACATGGGATGAACTCCCTATGCCTAAGCCAACCCATGGAAC-AGGCGTGCGGGGGCTCAGCCGAC
1 ACATGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGCGCTCAGCCGAT
* *
15999008 CGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC
65 CGGAGAGGCAGAATGCGCAAGCTAGGGATCGGACCGGTCCCCC
15999051 CCTGCATGCT
Statistics
Matches: 214, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 76 0.36
158 12 0.06
159 117 0.55
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
ACATGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATC
GGAGAGGCAGAATGCGCAAGCTAGGGATCGGACCGGTCCCCCTCGAGTACTATCGATCCCACTGC
CACAACCCTCGGTCCGACTCAAGCTTAG
Found at i:16000631 original size:27 final size:26
Alignment explanation
Indices: 16000586--16000640 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
16000576 ATCTGATCTG
16000586 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
16000612 TAGACTGGGGGATGAACTCCGTATGCT
1 TAGACT-GGGAATGAACTCCATATGCT
16000639 TA
1 TA
16000641 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:16001790 original size:26 final size:26
Alignment explanation
Indices: 16001739--16001791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16001729 CCAGTCCGAT
*
16001739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16001765 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16001791 C
1 C
16001792 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16002102 original size:23 final size:25
Alignment explanation
Indices: 16002068--16002118 Score: 63
Period size: 23 Copynumber: 2.1 Consensus size: 25
16002058 TCGATCCGAT
16002068 TTAGACTGGAATG-AC-TCGTATGC
1 TTAGACTGGAATGAACTTCGTATGC
*
16002091 TTAGACAT-GAATGAACTTTGTATGC
1 TTAGAC-TGGAATGAACTTCGTATGC
16002116 TTA
1 TTA
16002119 AGCCAACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 11 0.46
24 3 0.12
25 10 0.42
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (25 bp):
TTAGACTGGAATGAACTTCGTATGC
Found at i:16002383 original size:26 final size:26
Alignment explanation
Indices: 16002354--16002406 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16002344 CCGATTCGAT
*
16002354 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16002380 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16002406 C
1 C
16002407 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16002580 original size:26 final size:26
Alignment explanation
Indices: 16002551--16002603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16002541 CCGACCCAAT
16002551 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16002577 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16002603 C
1 C
16002604 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16002605 original size:197 final size:197
Alignment explanation
Indices: 16002263--16002622 Score: 506
Period size: 197 Copynumber: 1.8 Consensus size: 197
16002253 CGCTCAACTG
* * * * * *
16002263 GTCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCTGATCCCTCCTGCGTGCTGTCGATCCTGC
1 GTCGGAGAGGCAGAATGCACAAGCCAGGCATCGACCTGATCCCCCCTACGTGCTGTCGATCCTGC
* * ** * *
16002328 TGTCGCAACCCTCGGTCCGATTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGA
66 TGCCGCAACCCTCAGTCCGACCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
16002393 TGAACTCCATATGCCTAAGTCAATCCATGAAACGAGTGTGCGGGTGCTCAGTTGGTCGGAGAGGC
131 TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGTTGGTCGGAGAGGC
16002458 CA
196 CA
** * *
16002460 GTCGGAGAGGCAGAATGTGCAAGCCAGGCATCGACTTGGTCCCCCCTACGTGCTGTCGATCCTGC
1 GTCGGAGAGGCAGAATGCACAAGCCAGGCATCGACCTGATCCCCCCTACGTGCTGTCGATCCTGC
*
16002525 TGCCGTAACCCTCAGTCCGACCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGA
66 TGCCGCAACCCTCAGTCCGACCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGA
**
16002589 ATGAACTCTGTATGCCTAAGCCAACCCACGAAAC
130 ATGAACTCCATATGCCTAAGCCAACCCACGAAAC
16002623 AAGCATGTAG
Statistics
Matches: 140, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
197 139 0.99
198 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (197 bp):
GTCGGAGAGGCAGAATGCACAAGCCAGGCATCGACCTGATCCCCCCTACGTGCTGTCGATCCTGC
TGCCGCAACCCTCAGTCCGACCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGTTGGTCGGAGAGGC
CA
Found at i:16003087 original size:26 final size:26
Alignment explanation
Indices: 16003051--16003103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16003041 TCTGGTTTGC
*
16003051 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16003077 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16003103 C
1 C
16003104 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16003917 original size:337 final size:349
Alignment explanation
Indices: 16003226--16004003 Score: 856
Period size: 337 Copynumber: 2.3 Consensus size: 349
16003216 ACTACTGGGC
* * *
16003226 CAACCCTCGGTACCGAT-TG-TCTCTAGACTAGGAATTGAACTCCGTATGCTTAGACCGGGATGA
1 CAACCCTCGGT-CCGATCTGATCT-TAGACTGGGAA-TGAACTCCTTATGCTTAGACTGGGATGA
* *
16003289 ACTCCGTATGCCTAAGCCAACGCAC-AAACTGAACGTGAGGGCGCTCAGTAGGTCGGAGAGGCAG
63 ACTCCGTATGCCTAAGCCAACGCACAAAACTGAACATGAGGGCACTCAGTAGGTCGGAGAGGCAG
* * ** * *
16003353 AATGCGCAAGCTGGGGACCAAGCCCGAATCCCACAGTTACGTGGCTGTCGAATCCTAGCTGCGAC
128 AATGCACAAGCGGGGGACCAAGCCCGAATCCCACACCTACGTGGCTATCGAATCCTAGCTACGAC
* * * *
16003418 AACCCATCCAGTTCTGGTTGCGGGCTTAGACATGGGATAAACTCCCTATGAAGCTAACCCACGAA
193 AACCCATCCAGATCTGGCTGCGGGCTTAGACATGGAATAAACTCCCTATGAAGCCAACCCACGAA
* * * ** * * *
16003483 ACGGGCGTACGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAACTCGATCT
258 ACAGGCATACGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCAACCCGATCT
* * ***
16003548 CCTTGCGTGCTATCGATCCTGCTGTGG
323 CCTTGCGTGCTATCAATCCTACTACCG
* * *
16003575 CAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCTTATGCTTAGACATGGGACGAAC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGAC-TGGGATGAAC
* *
16003640 TCCGTATGCCTAAGCCAACGCACAAAAC-GAACAT-ACGGGCATTCAGTCGGTC-GAGAGGCAGA
65 TCCGTATGCCTAAGCCAACGCACAAAACTGAACATGA-GGGCACTCAGTAGGTCGGAGAGGCAGA
* * * *
16003702 ATGCACAAGCGGGGGACC-GGCCTG-GTCCC-C-CCTGCGT-GCTATCG-ATCCT-GCTACGACA
129 ATGCACAAGCGGGGGACCAAGCCCGAATCCCACACCTACGTGGCTATCGAATCCTAGCTACGACA
* * *
16003760 ACCC-T-C-GATCTGGCTG-GGGTTTAGACATGGAATAAACTCCCTTTGAAGCCAACCCATGAAA
194 ACCCATCCAGATCTGGCTGCGGGCTTAGACATGGAATAAACTCCCTATGAAGCCAACCCACGAAA
* * ** *
16003821 CAGGCATGCGGGTGCTCAGCCGACCGGTGAGGCAGAATACGCAAGCTGGGGATCGGCCCGGTCCT
259 CAGGCATACGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCAACCCGAT-CT
*
16003886 CAC-TG-GTGCTGTCAATCCTACTACCG
323 C-CTTGCGTGCTATCAATCCTACTACCG
* * * *
16003912 CAACCCTCGATCCGATCCGAACTTAGACTGGAAATGAACTCCTTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACT-GGGATGAAC
* * ** *
16003977 TCCATATGTCTAATTCAACCCACAAAA
65 TCCGTATGCCTAAGCCAACGCACAAAA
16004004 TGAGTGTGCG
Statistics
Matches: 363, Mismatches: 58, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
336 1 0.00
337 182 0.50
338 13 0.04
339 2 0.01
340 1 0.00
341 12 0.03
342 5 0.01
343 6 0.02
344 4 0.01
345 1 0.00
346 4 0.01
347 4 0.01
348 50 0.14
349 71 0.20
350 7 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (349 bp):
CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGATGAACT
CCGTATGCCTAAGCCAACGCACAAAACTGAACATGAGGGCACTCAGTAGGTCGGAGAGGCAGAAT
GCACAAGCGGGGGACCAAGCCCGAATCCCACACCTACGTGGCTATCGAATCCTAGCTACGACAAC
CCATCCAGATCTGGCTGCGGGCTTAGACATGGAATAAACTCCCTATGAAGCCAACCCACGAAACA
GGCATACGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCAACCCGATCTCCT
TGCGTGCTATCAATCCTACTACCG
Found at i:16003974 original size:26 final size:26
Alignment explanation
Indices: 16003933--16003984 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16003923 CCGATCCGAA
*
16003933 CTTAGACTGGAAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCATATG
**
16003959 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
16003985 TCTAATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16004633 original size:26 final size:26
Alignment explanation
Indices: 16004604--16004653 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16004594 TTCCGATCTT
16004604 AGACTAGGAATGAACTCCGTATGCTC
1 AGACTAGGAATGAACTCCGTATGCTC
* *
16004630 AGACTGGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
16004654 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTC
Found at i:16005017 original size:26 final size:26
Alignment explanation
Indices: 16004979--16005031 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16004969 TCGGTCTGAT
16004979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16005005 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16005031 C
1 C
16005032 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16005538 original size:157 final size:155
Alignment explanation
Indices: 16005005--16005539 Score: 451
Period size: 157 Copynumber: 3.4 Consensus size: 155
16004995 ACTCCGTATG
* *
16005005 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
16005070 TGGCCAGAGAGGTAGAATGCGCAAGTCGGGGA-CTGACCCGGT-CCCCCTGCACGCTATCGATCT
66 TGGCCGGAGAGGCAGAATGCGCAAG-CCGGGATCAG-CCCCGTCCCCCCTGCGTGCTACCGATCC
** * *
16005133 TGCTACCCCAACCCTCAGTCCGGTCTGAT
129 T-CT-GTCCAACCCTCAGTCTGGTCAGAT
* * * * * *
16005162 CTTAG--ATCGAGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGGGCGGGCGCTGA
1 CTTAGACAT-G-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
16005225 GCTGACCGGAGAGGCATAATGCGTAAGCCGGTGAT-GGGCTCGATCCCCCTCTGCGTGCTACTGA
64 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGG-GATCAGCCCCG-TCCCCC-CTGCGTGCTACCGA
* ** **
16005289 T-CTC-GTTACCACAACCTTGGTCTGG-CTAGGG
126 TCCTCTG-T-CCA-ACCCTCAGTCTGGTC-AGAT
* * * * * *
16005320 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGTGGCCGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
16005384 TCGGTCGGAG-GGCAGAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCCTGCGTGCTACCGATCC
66 T-GGCCGGAGAGGCAGAATGCGCAAGCC-GGGATCAGCCCCGTCCCCCCTGCGTGCTACCGATCC
*
16005448 TACTGTCGCAACCCTCAGTCTGGTCCGAT
129 T-CTGTC-CAACCCTCAGTCTGGTCAGAT
* * *
16005477 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGACGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
16005540 ACCAATCGAA
Statistics
Matches: 292, Mismatches: 65, Indels: 42
0.73 0.16 0.11
Matches are distributed among these distances:
155 2 0.01
156 20 0.07
157 176 0.60
158 79 0.27
159 13 0.04
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCCGTCCCCCCTGCGTGCTACCGATCCTC
TGTCCAACCCTCAGTCTGGTCAGAT
Found at i:16005582 original size:315 final size:315
Alignment explanation
Indices: 16005004--16005584 Score: 679
Period size: 315 Copynumber: 1.8 Consensus size: 315
16004994 AACTCCGTAT
* * * *
16005004 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAG
* * * * * * *
16005069 CTGGCCAGAGAGGTAGAATGCGCAAGTCGGGGACTGACCCGGTCCCCCTGCACGCTATCGATCTT
66 CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCCGTCCCCCTGCACGCTACCGATCCT
* * * *
16005134 GCTACCCCAACCCTCAGTCCGGTCTGATCTTAGATCGAGAATGAACTCTGTATGCCTAAGTCAAC
131 ACTACCCCAACCCTCAGTCCGGTCCGATCTTAGATCGAGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * * * ** * *
16005199 CCACAAAATGAGCGGGCGGGCGCTGAGCTGACCGGAGAGGCATAATGCGTAAGCCGGTGATGGGC
196 CCACAAAATGAGCGGGCAGACGCTCAACCAACCGAAAAGGCAGAATGCACAAGCCAGTGATCGGC
16005264 TCGATCCCCCTCTGCGTGCTACTGATCTCGTTACCACAACCTTGGTCTGGCTAGG
261 TCGATCCCCCTCTGCGTGCTACTGATCTCGTTACCACAACCTTGGTCTGGCTAGG
* * **
16005319 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGTGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAG
* * **
16005384 -TCGGTCGGAG-GGCAGAATGCGCAAGCCAGGGATCAG-CCCCGTCCCCCCTGCGTGCTACCGAT
66 CT-GGCCAGAGAGGCAGAATGCGCAAGCCAGGGA-CAGACCCCGT-CCCCCTGCACGCTACCGAT
** * *
16005446 CCTACTGTCGCAACCCTCAGTCTGGTCCGATCTTAGA-C-ATGGAATGAACTCCGTATGCCTAAG
128 CCTACTACCCCAACCCTCAGTCCGGTCCGATCTTAGATCGA--GAATGAACTCCGTATGCCTAAG
* * *
16005509 CCAACCCACGAAATGAGCGTGCAGACGCTCAACCAATCGAAAAGGCAGAATGCACAAGCCAAG-G
191 CCAACCCACAAAATGAGCGGGCAGACGCTCAACCAACCGAAAAGGCAGAATGCACAAGCC-AGTG
16005573 ATCGGCTCGATC
255 ATCGGCTCGATC
16005585 TGCCCCTACG
Statistics
Matches: 217, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
313 1 0.00
314 26 0.12
315 189 0.87
316 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGCCGCTCAG
CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCCGTCCCCCTGCACGCTACCGATCCT
ACTACCCCAACCCTCAGTCCGGTCCGATCTTAGATCGAGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAATGAGCGGGCAGACGCTCAACCAACCGAAAAGGCAGAATGCACAAGCCAGTGATCGGC
TCGATCCCCCTCTGCGTGCTACTGATCTCGTTACCACAACCTTGGTCTGGCTAGG
Found at i:16005700 original size:26 final size:26
Alignment explanation
Indices: 16005648--16005700 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16005638 CCGGTCCGAT
* *
16005648 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
16005674 CTTAGACAT-GGAATGAACTCTGCATG
1 CTTAGAC-TGGGAATGAACTCTGCATG
16005700 C
1 C
16005701 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:16006181 original size:26 final size:26
Alignment explanation
Indices: 16006152--16006204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16006142 CCAGTCCGAT
16006152 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16006178 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16006204 C
1 C
16006205 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16006601 original size:158 final size:159
Alignment explanation
Indices: 16006177--16006608 Score: 414
Period size: 158 Copynumber: 2.7 Consensus size: 159
16006167 AACTCCGTAT
* *
16006177 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16006242 CTGGCCAGAGAGGTAGAATGCACAAGTCGGGGA-CTGACCCGGTCCCCC-CTGCACGCTATCGAT
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCCTCTGCACGCTATCGAT
* * *
16006305 CTTGCTGCCCCAACCCTCAGTCCGGTCTGA
130 CTCGCTACCACAACCCTCAGTCCGGTCTGA
* * * * * * *
16006335 TCTTAG--ATCGAGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGGGCGGGCGCTG
1 GCTTAGACAT-G-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * **
16006398 AGCTGACCGAAGAGGCATAATGCGTAAGCCGGTGATGGGCTCGATCCCCCTCTGCGTGCTA-CTG
64 AGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCACGCTATC-G
* ** * *
16006462 ATCTCGTTACCACAA-CCTTGGTCTGG-CTAGG
128 ATCTCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
16006493 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
16006558 -TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTCTG
66 CT-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTG
16006609 GGTGTTGTTG
Statistics
Matches: 214, Mismatches: 51, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 12 0.06
158 177 0.83
159 21 0.10
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCACGCTATCGATC
TCGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:16006693 original size:26 final size:26
Alignment explanation
Indices: 16006652--16006704 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16006642 CTGGTCTGAT
16006652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16006678 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16006704 C
1 C
16006705 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16006982 original size:196 final size:196
Alignment explanation
Indices: 16006621--16006983 Score: 444
Period size: 196 Copynumber: 1.9 Consensus size: 196
16006611 TGTTGTTGAT
* * * **
16006621 CCTGCTGTCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
1 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * ** * * * *
16006686 AGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTATGGGCATTCAGCCGATCGGA
66 AGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCATACGGGCATCCAGCCAATCAGA
** * *
16006751 GAGGCAAAATGTGCAAGTCGGGGATCGGCCCGATCCCTCCCTGTGTCTATCGATCTTGATGTTGG
131 GAGGCAAAATGCACAAGCCGGGGATCGGACCGATCCCTCCCTGTGTCTATCGATCTTGATGTTGG
16006816 C
196 C
* *
16006817 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGAC-
1 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * *
16006881 ATGGAATGAACTCCGCATGCCTAAGCCAACCCA-AGAAACGAGCATCCGGGCGTCCAGCTAATCA
66 A-GGAATGAACTCCGCATGCCTAAGCCAACCCACA-AAACGAGCATACGGGCATCCAGCCAATCA
* *
16006945 GAGAGGTAGAATGCACAAGCCGGGGA-CTGGACCGATCCC
129 GAGAGGCAAAATGCACAAGCCGGGGATC-GGACCGATCCC
16006984 CATCTACGTG
Statistics
Matches: 138, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
195 3 0.02
196 135 0.98
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
AGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCATACGGGCATCCAGCCAATCAGA
GAGGCAAAATGCACAAGCCGGGGATCGGACCGATCCCTCCCTGTGTCTATCGATCTTGATGTTGG
C
Found at i:16007525 original size:158 final size:157
Alignment explanation
Indices: 16007231--16007785 Score: 494
Period size: 158 Copynumber: 3.5 Consensus size: 157
16007221 ACTCCATACG
* * * *
16007231 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGACGCTCAGC
* * * * * * * * *
16007296 TGATCGGAGAGGCAGAATGCGTAAG-TCAGGGAT-TGACCTGGTCTCTCCCTGCATGCTGTCGAT
65 CGACCAGAGAGGCAGAATGCGCAAGCTGA-GGATCAG-CCCGATCTCTCCCTGCATGCTGCCGAT
16007359 CTTGCTACCACAACCTTGGTTCGGTCTAAT
128 CTTGCTACCACAACCTTGGTTCGGTCTAAT
* * * *
16007389 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGAGGATGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGACGCTCAGC
* * * ** *
16007454 CGACCGGAGAGGCATAATACGCAAGCTGAGGATCAGCCCGATCTCTTTCTGCTTGCTGCC-AGTC
65 CGACCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCTCTCCCTGCATGCTGCCGA-TC
* * * **
16007518 TCGCTACCACAACCCTCGGTCCGG-CTAGGG
129 TTGCTACCACAA-CCTTGGTTCGGTCTA-AT
* * * *
16007548 CTTAGAAATGGAATGAACTCCCTTTGCCTAAGCCAACCCACGAAACGGGCGTGCAGG-CGCTCAG
1 CTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGACGCTCAG
* * * * * * *
16007612 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATC-CCCCCTACGTGCTACCGATC
64 CCGACCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCTCTCCCTGCATGCTGCCGATC
* * * * * * *
16007676 TTGCTATCGCAACCCTCGATCTGATCCAAT
129 TTGCTACCACAACCTTGGTTC-GGTCTAAT
* * * * *
16007706 CTTCA-ACTGGGAATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAG
1 CTT-AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGACGCTCAG
16007770 CCGACCAGAGAGGCAG
64 CCGACCAGAGAGGCAG
16007786 GATGTAAGTC
Statistics
Matches: 316, Mismatches: 67, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
157 10 0.03
158 198 0.63
159 103 0.33
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGACGCTCAGCC
GACCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCTCTCCCTGCATGCTGCCGATCTT
GCTACCACAACCTTGGTTCGGTCTAAT
Found at i:16008443 original size:26 final size:26
Alignment explanation
Indices: 16008414--16008484 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
16008404 GCTCAAACTT
16008414 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
16008440 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
*
16008466 TTAGACATGGAATAAACTC
1 TTAGACATGGAATGAACTC
16008485 CTATGCCTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGC
Found at i:16009260 original size:25 final size:26
Alignment explanation
Indices: 16009226--16009276 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
16009216 TGGTCCGATA
*
16009226 TTAGACTGGGAATGAACT-CGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
*
16009251 TTAGACTGGGGATGAAATCCGTATGC
1 TTAGACTGGGAATGAAATCCGTATGC
16009277 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAAATCCGTATGC
Found at i:16010304 original size:26 final size:26
Alignment explanation
Indices: 16010268--16010319 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16010258 TTAGTTAGAT
16010268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16010294 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16010320 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16010514 original size:26 final size:26
Alignment explanation
Indices: 16010476--16010528 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16010466 CTGGTCTGAT
16010476 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
16010502 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
16010528 C
1 C
16010529 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16010836 original size:159 final size:157
Alignment explanation
Indices: 16010501--16010962 Score: 447
Period size: 159 Copynumber: 2.9 Consensus size: 157
16010491 AACTTCGTAT
* * * *
16010501 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGATCGT-TCGGGCACTGA
* * * * * * * **
16010565 GCCGGCTTG-AGAGGCAAAATGCAAAGCTGGGGATCGACCCGGTCCACCCTACATGCTGTCGATC
65 GTC-GATCGAAGAGGCAAAATGCAAAGCCGGGGATCGGCTCGGTCCCCCCTATGTGCTGTCGATC
* * *
16010629 CTACTACTGCAACCCTCGGTCCGATCTGA
129 CTGCTGCCGCAACCCTCGGTCCGATCTGA
* *
16010658 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGATCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGATCGTTCGGGCACTGA
* * * *
16010722 GTCGATCGAAGAGGCATAATGCATAAGCCGGGGATCGGCTTGGTCCCCCTCTGTGTGCTGTCGGT
65 GTCGATCGAAGAGGCAAAATGCA-AAGCCGGGGATCGGCTCGGTCCCCC-CTATGTGCTGTCGAT
* * * *
16010787 CCCGCTGCCACAACCCTCGGTCCGGT-TGGG
128 CCTGCTGCCGCAACCCTCGGTCCGATCT-GA
* * * *
16010817 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAATGGGT-GTACGGG-AGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-GATCGTTCGGGCA-CT-
* * * * *
16010880 G-GTGGGTC-AGAGAGGCAGAATGCACAAGACGGGGATCGGCTCGAT-CCCCCTATGTGCTGTCG
63 GAGTCGATCGA-AGAGGCAAAATGCA-AAGCCGGGGATCGGCTCGGTCCCCCCTATGTGCTGTCG
16010942 ATCCTGCTGCCGCAACCCTCG
126 ATCCTGCTGCCGCAACCCTCG
16010963 ATCCAGTTCG
Statistics
Matches: 251, Mismatches: 43, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
156 5 0.02
157 99 0.39
158 27 0.11
159 116 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGATCGTTCGGGCACTGAG
TCGATCGAAGAGGCAAAATGCAAAGCCGGGGATCGGCTCGGTCCCCCCTATGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGATCTGA
Found at i:16012064 original size:26 final size:26
Alignment explanation
Indices: 16012026--16012078 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16012016 GGCTCAAACT
*
16012026 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16012052 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16012078 C
1 C
16012079 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16012240 original size:26 final size:26
Alignment explanation
Indices: 16012211--16012263 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16012201 TTGGTCTGAT
* *
16012211 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16012237 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16012263 C
1 C
16012264 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16013270 original size:26 final size:26
Alignment explanation
Indices: 16013241--16013293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16013231 CCGATTAGAT
16013241 CTTAGACTGGGAAT-ATACTCCGTATG
1 CTTAGACTGGGAATGA-ACTCCGTATG
*
16013267 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16013293 C
1 C
16013294 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16013494 original size:20 final size:20
Alignment explanation
Indices: 16013459--16013496 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16013449 TCTTAGATTG
*
16013459 GGAATGAACTCCGTATGCAT
1 GGAATGAACTACGTATGCAT
*
16013479 GGAATGAACTATGTATGC
1 GGAATGAACTACGTATGC
16013497 CTAAGCCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (20 bp):
GGAATGAACTACGTATGCAT
Found at i:16013997 original size:26 final size:26
Alignment explanation
Indices: 16013945--16013997 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16013935 CTGGTCCGAT
* *
16013945 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCACATG
** *
16013971 CTTAGACTAGGGGTGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCACATG
16013997 C
1 C
16013998 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:16014854 original size:26 final size:26
Alignment explanation
Indices: 16014816--16014865 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16014806 GTTTGATCTC
16014816 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
16014842 AGACT-GGAGATGAACTCCGTATGC
1 AGACTGGGA-ATGAACTCCATATGC
16014866 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:16015050 original size:25 final size:26
Alignment explanation
Indices: 16015022--16015073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16015012 TCGATCTGAT
*
16015022 CTTAGAC-TGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16015047 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16015073 C
1 C
16015074 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16015551 original size:26 final size:26
Alignment explanation
Indices: 16015522--16015574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16015512 CCGGTCTGAT
*
16015522 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16015548 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16015574 C
1 C
16015575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16016273 original size:26 final size:26
Alignment explanation
Indices: 16016235--16016287 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016225 GGCTCAAACT
*
16016235 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16016261 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16016287 C
1 C
16016288 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16016614 original size:26 final size:26
Alignment explanation
Indices: 16016578--16016630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016568 CTGGTTAGAT
16016578 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
16016604 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16016630 C
1 C
16016631 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16017311 original size:26 final size:26
Alignment explanation
Indices: 16017275--16017327 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16017265 CAGGTTCGAT
16017275 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
16017301 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
16017327 C
1 C
16017328 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:16017513 original size:26 final size:26
Alignment explanation
Indices: 16017471--16017523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16017461 TCGGTCTGAT
*
16017471 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16017497 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16017523 C
1 C
16017524 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16017839 original size:159 final size:158
Alignment explanation
Indices: 16017496--16017961 Score: 408
Period size: 159 Copynumber: 2.9 Consensus size: 158
16017486 AACTCCGTAT
* * * * * **
16017496 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGCGTGTGCGGGCGGTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAA
* * * * * * * * * * * *
16017561 CTTG-CCGTAAAGGTAGAATGCGCAAGCCGGGGACCAGCC-CGGTCACCCCC-G-ATGCTGTCGA
66 C-CGAGCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GCCTCGATC-CCCCCTGCGTGATGCCAA
** * * * *
16017622 TCCTACTGCCTCAACCCTCGGTCTTGTCT-GA
128 TCCCGCTGCCACAACCCTCGGTC-CGACTGGG
* * * * * * *
16017653 TCCTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGTGGGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGAGGGTGCGGGCACTCA
* * * *
16017717 ACCGATCGGAGAGGCATAATGCGCAAG-TCGGGGATCGACCT-GATCCCCCTCTGCGTGCTGCCG
65 ACCGAGCGGAGAGGCAGAATGCGCAAGCT-GGGGATCG-CCTCGATCCCCC-CTGCGTGATGCCA
16017780 ATCCCGCTGCCACAACCCTCGGTCCGACTGGG
127 ATCCCGCTGCCACAACCCTCGGTCCGACTGGG
* * *
16017812 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAA
* * * *
16017877 CCGGGCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTTCGTGATGCCAATCC
66 CCGAGCGGAGAGGCAGAATGCGCAAGCTGGGGATCGCCTCGATCCCCCCTGCGTGATGCCAATCC
*
16017942 TGCTGCCACAACCCTCGGTC
131 CGCTGCCACAACCCTCGGTC
16017962 TGGTCCAATC
Statistics
Matches: 252, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
156 7 0.03
157 84 0.33
158 39 0.15
159 120 0.48
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGAGGGTGCGGGCACTCAA
CCGAGCGGAGAGGCAGAATGCGCAAGCTGGGGATCGCCTCGATCCCCCCTGCGTGATGCCAATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:16017986 original size:696 final size:695
Alignment explanation
Indices: 16016270--16018060 Score: 2222
Period size: 696 Copynumber: 2.6 Consensus size: 695
16016260 GCTTAGACAT
* * * * *
16016270 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATG-CTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAG
* * * * *
16016335 AGGTAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGCC-AGTCCTGCTGCCA
65 AGGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTGCCA
*
16016399 CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
129 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
* * * * ** *
16016464 ACGGGCATACGGGGGCTAAGCCGACCGGAGAGGCAGAATGCATAAGCTGAGGATCGGC-CTGATC
194 ACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTC-GGTC
* * * *
16016528 CCCCCTACGTGATGCCAATCCTGCTACCGTAACCCTCGATCTGGTTAGATCTTAGACTGGGAATA
258 CCCCCTACGTGATGCCAATCCTGCTGCCGCAACCCTCGATCTGGTCA-ATCTTAGACTGGGAATG
* * *
16016593 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC
322 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * *
16016658 GAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTCTATGT
387 GGGCGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCGCTACGT
* * * * * *
16016723 GCTGTCGATCGTGCTGCTGGTCCTACTACTGAAACCCTTGGTCCAGTCTGATCTTAGACTTGGAA
452 GCTGTCGATCGTGCTACTGCTCCTACTACTCAAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
* * * * * *
16016788 TGAACTCTGTATGCTTAGACATGTAATGAACTCCGTACGCCTAATCTAACCCATGGAATGAGCGT
517 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGT
* * * *
16016853 GCTGGCGCTCAGTAGGCCTGAAAGGCAGAATGCGTAAGCTGGGGACCGACCCGGTCCCCCCTACA
582 GCGGGCGCTCACTAGGCCTGAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCC-ACA
* *
16016918 TGCTATCGATCTCACTATCGCAACCCTCGGTCCGATCCAATCTTAGACTG
646 TGCTATCGATCTCACTACCGCAACCCTCGGTCCGATCCAATCCTAGACTG
* * * *
16016968 GGAATGAACTCCATATGTCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATG-CTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAG
* * * * * *
16017033 AGCCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGGCGGTCTTGCTACCAC
65 AGGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
* * * *
16017098 AAGCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCGCAAAA
130 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
* * * * *
16017163 CGGGGGTGCGGGTGCTCA-ACGACCGAAGAGGCAGAATGCGCAAG-TCGAGGATCAGCTCGGTCC
195 CGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCTCGGTCC
* * * * * * * * *
16017226 CTCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCTACCAGGTTCGATCTTAGACTGGGAATGA
259 CCCCTACGTGATGCCAATCCTGCTGCCGCAACCCTCGATCTGG-TCAATCTTAGACTGGGAATGA
* *
16017291 ACTCCGTATGCTTAGACTGGGGAAGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCG
323 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* *
16017356 GGCGCTCAGCCAACCGGAGAGGCAAAATGCGTAAGCCGAGGATCGGCCCGGT-CCCCGCTACGTG
388 GGCGCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCGCTACGTG
* * * * *
16017420 CTGTCGATCGTGCTATTGCTCCTGCTA-TCACAACCCTCGATTCGGTCTGATCTTAGACTGGGAC
453 CTGTCGATCGTGCTACTGCTCCTACTACTCA-AACCCTCGATCCAGTCTGATCTTAGACTGGGAA
* * *
16017484 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGCGTGT
517 TGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGT
* * *
16017549 GCGGGCGGTCAACT-TGCC-GTAAAGGTAGAATGCGCAAGCCGGGGACC-AGCCCGGTCACCCCC
582 GCGGGCGCTC-ACTAGGCCTG-AAAGGCAGAATGCGCAAGCCGGGGACCGA-CCCGGTC-CCCCC
* * * * * **
16017611 -GATGCTGTCGATC-CTACTGCCTCAACCCTCGGTCTTG-TCTGATCCTAGACTG
643 ACATGCTATCGATCTC-ACTACCGCAACCCTCGGTC-CGATCCAATCCTAGACTG
* * *
16017663 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGTGGGTGCGGGCGCTGAACCGATCGGAG
1 GGAATGAACTCCGTATGC-TAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAG
* * * *
16017728 AGGCATAATGCGCAAGTCGGGGATCGACCTGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAC
65 AGGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
**
16017793 AACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
130 AACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
* * * * ** *
16017857 ATGAGTGTGCGGGCACTCAGCCGGGCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCC
194 ACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCC
* * *
16017922 CCCCTTCGTGATGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGA
259 CCCCTACGTGATGCCAATCCTGCTGCCGCAACCCTCGATCTGGT-CAATCTTAGACTGGGAATGA
* *
16017987 ACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG
323 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
*
16018052 GACGCTCAG
388 GGCGCTCAG
16018061 TCGACCAAAG
Statistics
Matches: 925, Mismatches: 152, Indels: 34
0.83 0.14 0.03
Matches are distributed among these distances:
694 3 0.00
695 225 0.24
696 317 0.34
697 197 0.21
698 183 0.20
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (695 bp):
GGAATGAACTCCGTATGCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAGA
GGCATAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACA
ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
GGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCC
CCTACGTGATGCCAATCCTGCTGCCGCAACCCTCGATCTGGTCAATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCGCTACGTGCTG
TCGATCGTGCTACTGCTCCTACTACTCAAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGG
GCGCTCACTAGGCCTGAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCACATGCTA
TCGATCTCACTACCGCAACCCTCGGTCCGATCCAATCCTAGACTG
Found at i:16018007 original size:26 final size:26
Alignment explanation
Indices: 16017971--16018023 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16017961 CTGGTCCAAT
*
16017971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16017997 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16018023 C
1 C
16018024 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16018720 original size:26 final size:26
Alignment explanation
Indices: 16018677--16018729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16018667 GGCTTAAACT
16018677 CTTAGACTGAGAAAGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
*
16018703 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAAAGAACTCCGTATG
16018729 C
1 C
16018730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAAAGAACTCCGTATG
Found at i:16019047 original size:26 final size:26
Alignment explanation
Indices: 16019018--16019070 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16019008 CTGATTCGAT
*
16019018 CTTAGACT-AGGAATGAACTTCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
16019044 CTTAGACTGAGGATGAAGTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
16019070 C
1 C
16019071 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:16019257 original size:26 final size:26
Alignment explanation
Indices: 16019228--16019280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16019218 CCGGTCTGAT
*
16019228 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16019254 CTTAGACATGGAATGCACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16019280 C
1 C
16019281 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16019617 original size:26 final size:26
Alignment explanation
Indices: 16019566--16019618 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16019556 CCGATTTGAT
*
16019566 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16019592 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16019618 C
1 C
16019619 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16019715 original size:548 final size:545
Alignment explanation
Indices: 16018676--16020058 Score: 1629
Period size: 547 Copynumber: 2.5 Consensus size: 545
16018666 TGGCTTAAAC
*
16018676 TCTTAGACTGAGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTG-GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** * *
16018741 CACGAAACGAGCGTGCGGGCGCTCAGCC-AGCCGGAGA-GTCAAAATGCGCAAGTCGGGGACCGG
65 CATGAAACGAGCGTGCGGGCGTTCAGCCGA-CCGGAGAGGT-AGAATGCGTAAG-CCAGGATCAG
* * * * *
16018804 CCCGGTCCCCCTCTACGTGCTACTGTCCCGCTGCCACAACCCTCGATCTGGTTGGGTCTTAGACT
127 CCCGGTCCCCCTCTACGTGCTGCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACA
* * *
16018869 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAGCCAGCCGGA
192 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAGGGCGCTCAGCCGGCCGGA
* * * * * *
16018934 GAGGTAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTGCGTTCTGTCGATCCTACTGCCGCA
257 GAGGCAGAATGCGCAAGCAGAGGATCAGCCCGAT---CCTGCGTTCTGTCGATCCTACTACCGCA
* * * *
16018999 ACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGAGGATGAAGTC
319 ACCCTCGATCCGATTCGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGAGGATGAACTC
** ** * *
16019064 CGTATGCCGAAGTCAACCCATCAAACGAGCATTTGGGCACTCAGTCGACCGGAGAGGCCGGTCGG
384 CGTATGCCGAAGTCAACCCATCAAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGA
* * *
16019129 AGAGGCAAAATGTACAAGCCGGGGATCAGCCCGATCCCCCCT-TGCATGCTGTC-GATCCTGCTA
449 AGAGGCAAAATGTACAAGCCGAGGATCAGCCCGATCCCCCCTGTG--TGATG-CAGATCCTACTA
* *
16019192 CTAGTCCTACT-TCCGCAACCCTTGGTCCGGTCTGA
511 CTAGTCCTACTGT-CGCAACCCTCGGTCCAGTCTGA
* *
16019227 TCTTAGACATGGAATGAACTCTGTATGCTTAGACATGGAATGCACTCCGTATGCCTAAGCCAACC
1 TCTTAGAC-TGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
16019292 CATGAAACGAGCGTGCGGGCGTTCAACCGACCGAAGAGGTAGAATGCGTAAGCCAACGATCAGCC
65 CATGAAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGTAGAATGCGTAAGCC-AGGATCAGCC
** * *
16019357 CAATCCCCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTATACAT
129 CGGTCCCCCTCTACGTGCTG-CGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACAT
* * * * ***
16019422 GGAATGAACTCCCTATTCCTAAGCCAACCCACGAAACGGGTGTGTGGGTGCTCAATTGGCCGGAG
193 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAGGGCGCTCAGCCGGCCGGAG
* *
16019487 AGGCAGAATGAGCAAGCTAG-GGATCAGCCCGAT-CTGCGTGT-TGTCGATCCTACTACCGTAAC
258 AGGCAGAATGCGCAAGC-AGAGGATCAGCCCGATCCTGCGT-TCTGTCGATCCTACTACCGCAAC
* * *
16019549 CCTCGATCCGATTTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCG
321 CCTCGATCCGATTCGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGAGGATGAACTCCG
* * * * * *
16019614 TATGCCTAAGTCAACCCA-CGAAATGAGCGTACGGTCGCTCAACCGACCGGAGAGGTCAGTCGAA
386 TATGCCGAAGTCAACCCATC-AAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGAA
* * ** *
16019678 GAGGCAGAATGTGCAAGCCGAGGATC-GACCCGATCCCCCCTGTGTGATGCAGATCCTACTGTTG
450 GAGGCAAAATGTACAAGCCGAGGATCAG-CCCGATCCCCCCTGTGTGATGCAGATCCTACTACTA
* *
16019742 GTCCTGCTGTCGTAACCCTCGGTCCAGTCTGA
514 GTCCTACTGTCGCAACCCTCGGTCCAGTCTGA
* *
16019774 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACC
1 TCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
16019839 CATGAAACGAGC-TGTGGGCGCTT-AGCCGGATCGGAGAGGCAGAATGCGTAAGCCAGGATCATC
65 CATGAAACGAGCGTGCGGGCG-TTCAGCC-GACCGGAGAGGTAGAATGCGTAAGCCAGGATCAGC
* * * * * ** * * *
16019902 CTGGTCCCCCTTTGCGTGTTGCTGGTCTCATTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACA
128 CCGGTCCCCCTCTACGTGCTGC-GGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACA
* * * *
16019967 TAGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAATGGGCGTGAGGGCGCTCAGCCGGTCGG
192 TGGAATGAACTCCCTATGCC-TAAGCCAACCCACGAAACGGGCGTGAGGGCGCTCAGCCGGCCGG
* *
16020032 AGAGGCATAATGCGCAAGCCGAGGATC
256 AGAGGCAGAATGCGCAAGCAGAGGATC
16020059 GGCTCGGTCC
Statistics
Matches: 704, Mismatches: 110, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
545 1 0.00
546 87 0.12
547 194 0.28
548 170 0.24
549 3 0.00
550 1 0.00
551 122 0.17
552 125 0.18
553 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (545 bp):
TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGTAGAATGCGTAAGCCAGGATCAGCCCG
GTCCCCCTCTACGTGCTGCGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCAGAGGATCAGCCCGATCCTGCGTTCTGTCGATCCTACTACCGCAACCCTCG
ATCCGATTCGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGAGGATGAACTCCGTATGC
CGAAGTCAACCCATCAAACGAGCATACGGGCACTCAACCGACCGGAGAGGCCAGTCGAAGAGGCA
AAATGTACAAGCCGAGGATCAGCCCGATCCCCCCTGTGTGATGCAGATCCTACTACTAGTCCTAC
TGTCGCAACCCTCGGTCCAGTCTGA
Found at i:16019813 original size:26 final size:26
Alignment explanation
Indices: 16019775--16019830 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16019765 CCAGTCTGAT
16019775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16019801 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16019827 CTTA
1 CTTA
16019831 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16020136 original size:160 final size:158
Alignment explanation
Indices: 16019800--16020230 Score: 432
Period size: 159 Copynumber: 2.7 Consensus size: 158
16019790 AACTCCGTAT
* * * * *
16019800 GCTTAGACATGGAATGAACTTCGTATG-CTTAAGCCAACCCATGAAACGAGC-TGTGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCA
* ***
16019863 GCCGGATCGGAGAGGCAGAATGCGTAAGCC-AGGATC-A-TCCTGGTCCCCCTTTGCGTGTTGCT
66 GCCGG-TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACT-C-GGT-CCCCTTTGCGCCATGCT
*
16019925 GGTCTCATTGCCACAACCCTCAGTCCGGCTGGG
127 GATCTCA-TGCCACAACCCTCAGTCCGGCTGGG
* *
16019958 GCTTAGACATAGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAATGGGCGTGAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCA
* *
16020023 GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCTTCTGCGCACCAT-C-G
66 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCTT-TGCG--CCATGCTG
* ** * *
16020086 ATCCTGC-TGCCACAACCGTTGGTTCGGTTGGG
128 AT-CT-CATGCCACAACCCTCAGTCCGGCTGGG
* * * *
16020118 GCTTAGAGATGGAATGAACTCCCTATGCC-TAAGCGAACCCATGAAACGGGCGT-ATGGGTGCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAACGGGCGTGA-GGGCGCTC
* *** * *
16020181 AGTCACCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCCCT
65 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCT
16020231 CTACGTGCTG
Statistics
Matches: 229, Mismatches: 33, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
158 25 0.11
159 120 0.52
160 77 0.34
161 4 0.02
162 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTTAAGCCAACCCATGAAACGGGCGTGAGGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCTTTGCGCCATGCTGATC
TCATGCCACAACCCTCAGTCCGGCTGGG
Found at i:16020931 original size:26 final size:26
Alignment explanation
Indices: 16020902--16020979 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16020892 ATGCCGTTGG
*
16020902 TTAGACTGGGGATGCACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
16020928 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTCCGTATGC
* *
16020954 TTATACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGGATGAACTCCGTATGC
16020980 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTCCGTATGC
Found at i:16021335 original size:159 final size:157
Alignment explanation
Indices: 16020960--16021453 Score: 471
Period size: 158 Copynumber: 3.1 Consensus size: 157
16020950 ATGCTTATAC
* * * * **
16020960 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCAGCTGGTCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
* * *
16021025 AGAGGC-TGAATGCGCAAGTCTGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCTAGCTACC
66 AGAGGCAT-AATGCACAAGTCCGGGATCGGCCCGGTCCCCCCTACGTGCTCTCGATCTAGCTACC
*
16021089 ACAACCCTCGGTCCGGTCTGATCTTAGA
130 ACAACCCTCGGTCCGGTCTGAGCTTAGA
* * * * * * *
16021117 CTAGAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCGACCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
* *
16021182 AGAGGCATAATGCACAAG-CCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACT-GGTGC-CGCT
66 AGAGGCATAATGCACAAGTCCG-GGATCGGCCCGGTCCCCC-CTACGTGCT-CTCGAT-CTAGCT
** * *
16021244 GTCACAACCCTCGGTCTGGT-TGGGGCTTAGA
127 ACCACAACCCTCGGTCCGGTCT-GAGCTTAGA
* * * *
16021275 GATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAGCCGACCA
1 -ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCG
* ** * * * * *
16021340 GAGAGGCAGAATGTGCAAGTCAGGGATAGGCCCGATCCCCCCTGCGTGCTGC-CGATCCT-GCTG
65 GAGAGGCATAATGCACAAGTCCGGGATCGGCCCGGTCCCCCCTACGTGCT-CTCGAT-CTAGCTA
*** * *
16021403 CTGTAACCCTCGGTCCAGTCTGACCTTAGA
128 CCACAACCCTCGGTCCGGTCTGAGCTTAGA
* *
16021433 CTGGGAATGAACTTCGTATGC
1 AT-GGAATGAACTCCGTATGC
16021454 TTAGATGGGG
Statistics
Matches: 270, Mismatches: 55, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 87 0.32
158 91 0.34
159 88 0.33
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
AGAGGCATAATGCACAAGTCCGGGATCGGCCCGGTCCCCCCTACGTGCTCTCGATCTAGCTACCA
CAACCCTCGGTCCGGTCTGAGCTTAGA
Found at i:16021468 original size:25 final size:26
Alignment explanation
Indices: 16021427--16021478 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16021417 CCAGTCTGAC
*
16021427 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16021453 CTTAGA-TGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16021478 C
1 C
16021479 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16021809 original size:342 final size:343
Alignment explanation
Indices: 16021111--16021847 Score: 842
Period size: 342 Copynumber: 2.2 Consensus size: 343
16021101 CCGGTCTGAT
* * *
16021111 CTTAGACTA-GAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTACGGGCACTGAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGC
** * * *
16021175 CGACCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACTGGTGC
66 CGACCAAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTACTGGTCC
* * * ** *
16021240 CGCTGTCACAACCCTCGGTCTGGTTGGGGCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * ** *
16021305 CCCATGAAACGGGCGTGCGGGGGCTCAGCCGACCAGAGAGGCAGAATGTGCAAGTCAGGGATAGG
196 CCCATCAAACGGACGTGCGGGCGCTCAGCCGACCAGAGAGACAGAATGCACAAGCCAGGGATAGG
* * * * * *
16021370 CCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAGACT
261 CCCGATCCCCCCTGCATGCTGCCGATCCTACTACCGTAACCCTCGATACAGTCTGACCTTAGACT
** * *
16021435 GGGAATGAACTTCGTATG
326 GAAAATAAACTTCATATG
* * * *
16021453 CTTAGA-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTGAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGC
* ** * * * *
16021517 CGGCCAAAGAGGCATAATGCGTAAGTCGGGGATCGACCCAGTCCCCCTCTGCGTGCT-GTCGGTC
66 CGACCAAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTACT-GGTC
* *
16021581 CCACTGCCACAA-CTTATGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC-ATGCCTAAGCC
130 CCACTGCCACAACCCT-CGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ****
16021644 AACCCA-CACAACGGACGTGTGGGCGCTCAGCCGGTGGGAGAGACAGAATGCACAAGCC-GAGGA
194 AACCCATCA-AACGGACGTGCGGGCGCTCAGCCGACCAGAGAGACAGAATGCACAAGCCAG-GGA
* * * * ** *
16021707 TCGGCTCGGTCCCCCCTGCATGCTGCCGATCCTACTACCGTAACCTTCGATATGGTCTGATCTTA
257 TAGGCCCGATCCCCCCTGCATGCTGCCGATCCTACTACCGTAACCCTCGATACAGTCTGACCTTA
16021772 GACTGAAAATAAAC-TCTATATG
322 GACTGAAAATAAACTTC-ATATG
* * *
16021794 CTTAGACTAGGGATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
16021848 GAGCACTCAA
Statistics
Matches: 326, Mismatches: 62, Indels: 14
0.81 0.15 0.03
Matches are distributed among these distances:
340 4 0.01
341 135 0.41
342 187 0.57
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTGAGC
CGACCAAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTACTGGTCC
CACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATCAAACGGACGTGCGGGCGCTCAGCCGACCAGAGAGACAGAATGCACAAGCCAGGGATAGG
CCCGATCCCCCCTGCATGCTGCCGATCCTACTACCGTAACCCTCGATACAGTCTGACCTTAGACT
GAAAATAAACTTCATATG
Found at i:16022495 original size:26 final size:26
Alignment explanation
Indices: 16022459--16022511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16022449 CTGGTCTGAT
16022459 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16022485 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16022511 C
1 C
16022512 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16022732 original size:368 final size:367
Alignment explanation
Indices: 16022030--16022906 Score: 946
Period size: 368 Copynumber: 2.4 Consensus size: 367
16022020 AACAAGCGTG
* **
16022030 TCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCCAATCTTA
1 TCGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * *
16022095 GACTCGAAATAAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
65 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * * *
16022160 AATGAGTGTACGAGCATTCAGTCGACCGGAGAGGCCGGTCAAAGAGGCATAATGTGCAAGCTGGG
130 AACGAGCGTGCGAGCACTCAGCCGACCGAAGAGGCCGATCAAAGAGGCATAATGCGCAAGCTGGA
* * * * * *
16022225 GCTCAGCCTAGTTCCCCTCTGGATGCTGTCGATCCCGCTGTCGATCCTGCTGCCACAACACTCGG
195 GATCAGCCTAGATCCCCTCTCGATGCTGCCAATCCCGCTGTCGATCCTGCTGCCACAACACTCAG
* * *
16022290 TTTGACTAGCGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
260 TCTGACTAGCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
*** ** * * *
16022355 AGGCGCTCAGCCGGTCGGAGAGGTAGAATTTGCATGTCGGGGA
325 AGGCGCTCAGCCAACCGGAGAGGTAGAATGCGCAAGCCGAGGA
* * * * *
16022398 TCGGCTCGATCCCCTCTACGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTA
1 TCGGCCCGGTCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * *
16022463 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCAGGA
65 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * **
16022528 AACGTGCGTGCGAG-AGCTCAGCC-AGTCGAAGAGGCCGATCGGAGAGGCATAATGCGCAAGAC-
130 AACGAGCGTGCGAGCA-CTCAGCCGA-CCGAAGAGGCCGATCAAAGAGGCATAATGCGCAAG-CT
* * * * * *
16022590 GGAGATCATCC-CGATCTTCCTCTACG-TGCTGCCAATCTCGCTGTCGGTCCTGCTGCCACAACC
192 GGAGATCAGCCTAGATC-CCCTCT-CGATGCTGCCAATCCCGCTGTCGATCCTGCTGCCACAACA
* * * * ** *
16022653 CTCAGTCTGGCTGGGGCTTATACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAG
255 CTCAGTCTGACTAGCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* *
16022718 CGTGC-GGCCGCTCAGCCAACCGTAGAGGTAGAATGCGTAAGCCGAGGA
320 CGTGCAGG-CGCTCAGCCAACCGGAGAGGTAGAATGCGCAAGCCGAGGA
* * * * *
16022766 TCGGCCCGGTGCCCCCTGCGT-CTGTTGGTCCTGCTGTCGCAACCCTCGAT-TCGAT-TCGATCT
1 TCGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCT-GATCT
* * * * *
16022828 TAGACTGGGAATGAACTTCGTACGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCA
63 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
16022892 CGAAACGAGCGTGCG
127 CGAAACGAGCGTGCG
16022907 GGCGCTCAAT
Statistics
Matches: 419, Mismatches: 79, Indels: 23
0.80 0.15 0.04
Matches are distributed among these distances:
366 2 0.00
367 109 0.26
368 302 0.72
369 6 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (367 bp):
TCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGAGCACTCAGCCGACCGAAGAGGCCGATCAAAGAGGCATAATGCGCAAGCTGGAG
ATCAGCCTAGATCCCCTCTCGATGCTGCCAATCCCGCTGTCGATCCTGCTGCCACAACACTCAGT
CTGACTAGCGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCA
GGCGCTCAGCCAACCGGAGAGGTAGAATGCGCAAGCCGAGGA
Found at i:16022885 original size:183 final size:185
Alignment explanation
Indices: 16022668--16023029 Score: 462
Period size: 183 Copynumber: 2.0 Consensus size: 185
16022658 TCTGGCTGGG
* * * *
16022668 GCTTATACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAA
* * * * * * * * * * *
16022733 CCAACCGTAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGGTGCCCCC-TGCGT-CTGTTGGTC
66 CCAACCGGAGAGGCAGAATGCGCAACCCGAGGACCGACCCGATCCCCCCTTGCATGCTGTCGATC
** *
16022796 CTGCTGTCGCAACCCTCGATTC-GAT-TCGATCTTAGACTGGGAATGAACTTCGTAC
131 CTGCTACCGCAACCCTC-AGTCTGATCT-GATCTTAGACTGGGAATGAACTTCGTAC
*
16022851 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAA
* * * * *
16022916 TCGACCGGCGAGGCAGAATGTGCAACCCGGGGACCGACCCGATCCCCCCTTGCATGCTGTCGATC
66 CCAACCGGAGAGGCAGAATGCGCAACCCGAGGACCGACCCGATCCCCCCTTGCATGCTGTCGATC
16022981 CTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACT
131 CTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACT
16023030 CTGTATGCCT
Statistics
Matches: 151, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
183 96 0.64
184 7 0.05
185 47 0.31
186 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAA
CCAACCGGAGAGGCAGAATGCGCAACCCGAGGACCGACCCGATCCCCCCTTGCATGCTGTCGATC
CTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTAC
Found at i:16024310 original size:26 final size:26
Alignment explanation
Indices: 16024281--16024333 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16024271 CCGGTCTGAT
* *
16024281 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
16024307 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16024333 C
1 C
16024334 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16024450 original size:184 final size:184
Alignment explanation
Indices: 16024123--16024491 Score: 443
Period size: 184 Copynumber: 2.0 Consensus size: 184
16024113 CCGGTTGGGA
* * * * * *
16024123 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCATTCAGT
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
* * * ** * * *
16024188 CGACTGAAGACGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCACCCTATATACTGTCAATCCT
66 CAACCGAAGACGCAAAATGCGCAAGCCAGGGACCAGCCCAGTCCACCCTACATACTGTCAATCCT
* * * * * *
16024253 GCGGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
131 ACGGCCACAACCCTCGATCCGATCTGATATTAGACTAGGAATGAACTCCGTATG
* *
16024307 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
* * * * * * *
16024372 CAACCGGAGAGGCAAAATGCGTAAGCCAGGGACC-GACCCAGTCCCCCCTACGTGCTGTCGATCC
66 CAACCGAAGACGCAAAATGCGCAAGCCAGGGACCAG-CCCAGTCCACCCTACATACTGTCAATCC
* *
16024436 TACTGCCGCAACCCTCGATCCGATCTGATATTAGACTAGGAATGAACTCCGTATG
130 TACGGCCACAACCCTCGATCCGATCTGATATTAGACTAGGAATGAACTCCGTATG
16024491 C
1 C
16024492 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
183 1 0.01
184 152 0.99
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (184 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
CAACCGAAGACGCAAAATGCGCAAGCCAGGGACCAGCCCAGTCCACCCTACATACTGTCAATCCT
ACGGCCACAACCCTCGATCCGATCTGATATTAGACTAGGAATGAACTCCGTATG
Found at i:16024614 original size:343 final size:343
Alignment explanation
Indices: 16023937--16024577 Score: 743
Period size: 342 Copynumber: 1.9 Consensus size: 343
16023927 TGGCTCAAAC
* * *
16023937 TCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
** * * * * * * ** * *
16024002 CACAAAACGAGCGTTTAAGCGCTGAGCCGATCGGATAGGCATAATCCACAAGCTGGGGATCGGCC
66 CACAAAACGAGCGTGCAAGCGCTCAACCAACCGGAGAGGCAAAATCCACAAGCCAGGGACCGACC
* * * *
16024067 CGATCCCCCTCTGCATGCTGTCGGTCCCACTACCACAACCCTCAATCCGGTTGGGACTTAGACAT
131 CGATCCCCCTCTACATGCTGTCGATCCCACTACCACAACCCTCAATCCGATTGAGACTTAGACAT
* * * * * * *
16024132 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCATTCAGTCGACTGAAG
196 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGACCGAAG
* * * * *
16024197 ACGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCACCCTATATACTGTCAATCCTGCGGCCACA
261 ACGCAGAATGCGCAAGCCGAGGATCAACCCGATCCACCCTATATACTGTCAATCCTACGGCCACA
16024262 ACCCTCGGTCCGGTCTGA
326 ACCCTCGGTCCGGTCTGA
**
16024280 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
* ** * * **
16024345 CACGAAACGAGCGTGCGGGCGCTCAATCAACCGGAGAGGCAAAATGCGTAAGCCAGGGACCGACC
66 CACAAAACGAGCGTGCAAGCGCTCAACCAACCGGAGAGGCAAAATCCACAAGCCAGGGACCGACC
* * * * * *
16024410 C-AGTCCCCC-CTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCTGATA-TTAGAC
131 CGA-TCCCCCTCTACATGCTGTCGATCCCACTACCACAACCCTCAATCCGAT-TGAGACTTAGAC
* * * *
16024472 -TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTGAGTCGACCG
194 AT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGACCG
* * *
16024536 AAGAGGCATAATGCGTAAGCCGAGGATCAACCCGATCC-CCCT
258 AAGACGCAGAATGCGCAAGCCGAGGATCAACCCGATCCACCCT
16024578 CTGCGTGCTG
Statistics
Matches: 243, Mismatches: 52, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
341 5 0.02
342 122 0.50
343 116 0.48
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (343 bp):
TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
CACAAAACGAGCGTGCAAGCGCTCAACCAACCGGAGAGGCAAAATCCACAAGCCAGGGACCGACC
CGATCCCCCTCTACATGCTGTCGATCCCACTACCACAACCCTCAATCCGATTGAGACTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGACCGAAG
ACGCAGAATGCGCAAGCCGAGGATCAACCCGATCCACCCTATATACTGTCAATCCTACGGCCACA
ACCCTCGGTCCGGTCTGA
Found at i:16024661 original size:159 final size:158
Alignment explanation
Indices: 16024306--16024807 Score: 493
Period size: 159 Copynumber: 3.2 Consensus size: 158
16024296 AACTCTGTAT
* *
16024306 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16024371 TCAACCGGAGAGGCAAAATGCGTAAGCC-AGGGACCGACCC-AGTCCCCCCTACGTGCTGTCGAT
66 TCGACCGAAGAGGCAAAATGCGTAAGCCGA-GGACCGACCCGA-TCCCCCCTGCGTGCTGTCGAT
* *
16024434 CCTACTGCCGCAACCCTCGATCCGATCTGA
129 CCTACTGCCACAACCCTCGATCCGAGCTGA
** * * * *
16024464 TATTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
16024528 GTCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGGT
65 GTCGACCGAAGAGGCAAAATGCGTAAGCCGAGGACCGACCCGATCCCCC-CTGCGTGCTGTCGAT
* * * *
16024593 -CTCACTGCCATAACCCTCGGTCTG-GCTGGG
129 CCT-ACTGCCACAACCCTCGATCCGAGCT-GA
* * * * *
16024623 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAATTG-GCGCGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTCA
* * * * * **
16024687 GTCGGCCGAGGAGGCAGAATGCGCAAGCCGGGGACCGA-CCGATCCCCCCTGCGTGCTACCGATC
65 GTCGACCGAAGAGGCAAAATGCGTAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * * *
16024751 CTGCTACCGCAACCCTC-AGTCC-AGTCCGA
130 CTACTGCCACAACCCTCGA-TCCGAG-CTGA
* *
16024780 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16024808 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 52, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 52 0.19
158 111 0.40
159 113 0.41
160 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGAAGAGGCAAAATGCGTAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGATCCGAGCTGA
Found at i:16024810 original size:26 final size:26
Alignment explanation
Indices: 16024781--16024833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16024771 CCAGTCCGAT
16024781 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16024807 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16024833 C
1 C
16024834 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16026234 original size:26 final size:26
Alignment explanation
Indices: 16026195--16026246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16026185 TGGCTCAAAA
16026195 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
16026221 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
16026247 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:16027152 original size:512 final size:504
Alignment explanation
Indices: 16026194--16027331 Score: 1262
Period size: 512 Copynumber: 2.3 Consensus size: 504
16026184 GTGGCTCAAA
*
16026194 ATCTTAGACTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * **
16026259 CCATGAAACGAGAGTGTGGGCACTC-A---GTC--GA-TCGGAATGCACAAGCCGGGGATCGACC
66 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAGAGGCAGAATGCGTAAGCCGGGGATCGACC
* **
16026317 CGGTCCCCCCCTATGTGCTGTCGATCCTGCTAACGCAACCCTCAGTCCGATCTGATCTTAGACTA
131 CGGTCCCCCCCTACGTGCTGTCGATCCTGCTAACGCAACCCTCAGTCCGATCCAATCTTAGACTA
* * * *
16026382 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACTGAAG
196 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGATGCTGAGCCGACAGAAG
* * ** * *
16026447 AGGCATAATGCGCAAGACAGGGATCGGCCCAATCCCCCTCTGTGTGTTGCCAGTCGCGCTACCAC
261 AGACATAATGCGCAAGACAGGGATCGACCCAATCCCCCTCTACGTGCTGCCAGTCCCGCTACCAC
* * **
16026512 AACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAA
326 AACCCTCGGTCTGACCAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAA
** ** * * **
16026577 TGAGAGTGTGGGCACTCAGTCGGTTGGAGAGGTAGAATACGCAAGCCGGGGATCGACCCGATCCC
391 TGAGAGTACGGGCACTCAACCGGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCC
* * * * * *
16026642 CCCTGCGTGATGTTGATCTTGCAACTGGTCCTGCTGTCGCAACCCTCGATCCGATCTG
456 CCATACGTGATATCGATC---CAACT-G--CTGC--T-GCAAACCTCGATCCGATCCG
* * *
16026700 ATCTTAGATTGGGAATTAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
16026765 CCACGAAACGAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAGAATGCGTAAGCTGAGGG-TC-A
66 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCC-GAGAGGCAGAATGCGTAAGCCG-GGGATCGA
* * ** *
16026828 GCCCGGT-CCCCCTTACGTGTTGTCGATCCTG-TTGCGCAACCCTCAGTCCGGTCCAATCTTAGA
129 -CCCGGTCCCCCCCTACGTGCTGTCGATCCTGCTAACGCAACCCTCAGTCCGATCCAATCTTAGA
* * * *
16026891 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GA-GCATCGAGCCGGC
193 CTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGATGC-T-GAGCC-GA
* * * * *
16026954 CAG-AGAGACGTAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGCTGCTAGTCCCGC
255 CAGAAGAGACATAATGCGCAAGACAGGGATCGACCCAATCCCCCTCTACGTGCTGCCAGTCCCGC
* * * *
16027018 TACCCCAACCCTCGGTCTGACCAGGGCTTTGACATGGAATGAACTCCCTATGCCTAGGCCAACCC
320 TACCACAACCCTCGGTCTGACCAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCC
* * * * * *
16027083 ACGAAATGGGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAGTGCGCAAGCCAAGGATCGGCCC
385 ACGAAATGAGAGTACGGGCACTCAACCGGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCC
* * * *
16027148 GATCCCCCATACGTGCTATCGATCCTACTGCTGCTGCAAACCTCGGTCCGGTCCG
450 GATCCCCCATACGTGATATCGATCCAACTGCTGCTGCAAACCTCGATCCGATCCG
* * * *
16027203 ATCTTAGACTGAGAATGAACTCTGTATGCTTAGA-ATAGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16027267 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGGATGCGTAAGTCAGGGATCGA
65 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC-GAGAGGCAGAATGCGTAAGCCGGGGATCGA
16027332 ACGGGTGGTA
Statistics
Matches: 526, Mismatches: 90, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
502 5 0.01
503 120 0.23
504 2 0.00
506 85 0.16
507 1 0.00
508 1 0.00
509 4 0.01
510 4 0.01
511 2 0.00
512 252 0.48
513 27 0.05
514 20 0.04
515 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (504 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAGAGGCAGAATGCGTAAGCCGGGGATCGACC
CGGTCCCCCCCTACGTGCTGTCGATCCTGCTAACGCAACCCTCAGTCCGATCCAATCTTAGACTA
GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGATGCTGAGCCGACAGAAG
AGACATAATGCGCAAGACAGGGATCGACCCAATCCCCCTCTACGTGCTGCCAGTCCCGCTACCAC
AACCCTCGGTCTGACCAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAA
TGAGAGTACGGGCACTCAACCGGTCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCCGATCCC
CCATACGTGATATCGATCCAACTGCTGCTGCAAACCTCGATCCGATCCG
Found at i:16027154 original size:159 final size:157
Alignment explanation
Indices: 16026727--16027164 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 157
16026717 AACTCCGTAT
* * * *
16026727 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
* * * * * * *
16026792 CCGGCCGGAGAGGCAGAATGCGTAAGCTGAGGGTCAGCCCGGTCCCCCTTACGTGTTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCTGTAGATCC
* ** * *
16026857 TGTTGCGCAACCCTCAGTCCGGTCCAA
131 CGTACCCCAACCCTCAGTCCGGACCAA
* * * *
16026884 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGC-ATCG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTC-
* * * * *
16026947 AGCCGGCCAGAGAGAC-GTAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCTCTACGTGCTGCT
64 AACCGGCCGGAGAGGCAG-AATGCGCAAGCCGAGGATCGGCCCGA-TCCCCCT-TACGTGCTG-T
* * *
16027010 AG-TCCCGCTACCCCAACCCTCGGT-CTGACCAGG
125 AGATCCCG-TACCCCAACCCTCAGTCCGGACCA-A
* * * *
16027043 GCTTTGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAATGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
* * * *
16027108 CCGGTCGGAGAGGCAGAGTGCGCAAGCCAAGGATCGGCCCGATCCCCCATACGTGCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCT
16027165 ATCGATCCTA
Statistics
Matches: 224, Mismatches: 45, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
156 4 0.02
157 88 0.39
158 25 0.11
159 102 0.46
160 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCTGTAGATCC
CGTACCCCAACCCTCAGTCCGGACCAA
Found at i:16030462 original size:611 final size:611
Alignment explanation
Indices: 16029299--16030508 Score: 2098
Period size: 611 Copynumber: 2.0 Consensus size: 611
16029289 GGGTGCAACT
* * *
16029299 GACACTTTCATCACACCAGAAGAAGCAAAAAGGTGTGGTCTTCAGATTGGTAAAGACTGTGGATA
1 GACACTTTCATCACACCAGAAGAAGCAAAAAAGTGTGGTCTTCAGATTAGTAAAGACTGTGGACA
*
16029364 AATGAAGGCAGTCAACTCGCCAGCCTTTACGATCAGTGGGAGCTCAAAGAGTGTGACAACCCGAT
66 AATGAAGGCAGTCAACTCGCCAGCCTTTACGATCAGTGGAAGCTCAAAGAGTGTGACAACCCGAT
*
16029429 TGGGGCCATGGGAAGGGAAGGTAGACTTTATAGTTTCCCCCATGGATGACTTTGATGTTGTTCTC
131 TGGGGCCATGGGAAGGGAAGGTAGACTTTACAGTTTCCCCCATGGATGACTTTGATGTTGTTCTC
* *
16029494 ATATTGGACTTCATGATGTTGGCTCTGGTCATCCCTATCCCCGCCGCTAGCTACTTGTTGTTCTT
196 AGATTGGACTTCATGATGTTGGCTCAGGTCATCCCTATCCCCGCCGCTAGCTACTTGTTGTTCTT
16029559 AGGGGAAAACCCATGTGTGGTGCCAGCCAACATCTTACCAAAGAGTGGGAAGAAAATGATTTCAA
261 AGGGGAAAACCCATGTGTGGTGCCAGCCAACATCTTACCAAAGAGTGGGAAGAAAATGATTTCAA
16029624 CTTTGCAGTTCAAGAAAGGGGTAAAGAGAGGGGAACCCTCCTTTGTGGCTGTGCCGATCTACAAA
326 CTTTGCAGTTCAAGAAAGGGGTAAAGAGAGGGGAACCCTCCTTTGTGGCTGTGCCGATCTACAAA
*
16029689 GAAGGGTCGAAAGTAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAGAATTCGAAGAGGT
391 GAAGGGTCGAAAGTAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAGAATTCAAAGAGGT
* * * * *
16029754 GATGCCAGAGATGTTGCCTAAGGTTCTACCCCCTTGACGAGTAGTGGACCATGAAATTGAGCTCT
456 GATGCCAGAAATGTTGCCTAAGGTTCTACCCCCTCGACGAGCAATGGACCATGAAATTGAGCTCC
** * * **
16029819 TCCTAGGAGTGAAACCCCCTGCTAGAGCTCCTTACCGCATGGCCCTGCCAGAGTTGGTTGAACTA
521 TCCTAGGAACGAAACCCCCTGCTAGAGCTCCTTACCACATGGCCCCGCCAGAGTTGGCCGAACTA
16029884 AGAAAACAGTTAGATGAGCTGCTACC
586 AGAAAACAGTTAGATGAGCTGCTACC
* *
16029910 GACACTTTCATCACACTAGAAGAAGCAAAAAAGTGTGGTCTTCAGATTAGTAAAGACTGTGGACG
1 GACACTTTCATCACACCAGAAGAAGCAAAAAAGTGTGGTCTTCAGATTAGTAAAGACTGTGGACA
** * * * *
16029975 AATGAAGGTGGTCAACTCGCTAGCCTTTATGATCAGTGGAAGCTCCAAGAGTGTGACAACCTGAT
66 AATGAAGGCAGTCAACTCGCCAGCCTTTACGATCAGTGGAAGCTCAAAGAGTGTGACAACCCGAT
16030040 TGGGGCCATGGGAAGGGAAGGTAGACTTTACAGTTTCCCCCATGGATGACTTTGATGTTGTTCTC
131 TGGGGCCATGGGAAGGGAAGGTAGACTTTACAGTTTCCCCCATGGATGACTTTGATGTTGTTCTC
*
16030105 AGATTGGACTTCATGATGTTGGCTCAGGTCATCCCTATCCCCGCCGCTAGCTGCTTGTTGTTCTT
196 AGATTGGACTTCATGATGTTGGCTCAGGTCATCCCTATCCCCGCCGCTAGCTACTTGTTGTTCTT
* *
16030170 AGGGGAAAACCCATGTGTGGTGCCAGCCAACATCTTACCAAAGAGTGGGAAGAAAATGATTTTAG
261 AGGGGAAAACCCATGTGTGGTGCCAGCCAACATCTTACCAAAGAGTGGGAAGAAAATGATTTCAA
* * * *
16030235 CTTTGTAGTTCAAGAAAGGGGTAAAGAGAGGGGAACCTTTCTTTGTGGCTGTGCCGATCTATAAA
326 CTTTGCAGTTCAAGAAAGGGGTAAAGAGAGGGGAACCCTCCTTTGTGGCTGTGCCGATCTACAAA
16030300 GAAGGGTCGAAAGTAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAGAATTCAAAGAGGT
391 GAAGGGTCGAAAGTAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAGAATTCAAAGAGGT
16030365 GATGCCAGAAATGTTGCCTAAGGTTCTACCCCCTCGACGAGCAATGGACCATGAAATTGAGCTCC
456 GATGCCAGAAATGTTGCCTAAGGTTCTACCCCCTCGACGAGCAATGGACCATGAAATTGAGCTCC
16030430 T-CTCAGGAACGAAACCCCCTGCTAGAGCTCCTTACCACATGGCCCCGCCAGAGTTGGCCGAACT
521 TCCT-AGGAACGAAACCCCCTGCTAGAGCTCCTTACCACATGGCCCCGCCAGAGTTGGCCGAACT
16030494 AAGAAAACAGTTAGA
585 AAGAAAACAGTTAGA
16030509 AATGCTACTA
Statistics
Matches: 564, Mismatches: 34, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
610 2 0.00
611 562 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (611 bp):
GACACTTTCATCACACCAGAAGAAGCAAAAAAGTGTGGTCTTCAGATTAGTAAAGACTGTGGACA
AATGAAGGCAGTCAACTCGCCAGCCTTTACGATCAGTGGAAGCTCAAAGAGTGTGACAACCCGAT
TGGGGCCATGGGAAGGGAAGGTAGACTTTACAGTTTCCCCCATGGATGACTTTGATGTTGTTCTC
AGATTGGACTTCATGATGTTGGCTCAGGTCATCCCTATCCCCGCCGCTAGCTACTTGTTGTTCTT
AGGGGAAAACCCATGTGTGGTGCCAGCCAACATCTTACCAAAGAGTGGGAAGAAAATGATTTCAA
CTTTGCAGTTCAAGAAAGGGGTAAAGAGAGGGGAACCCTCCTTTGTGGCTGTGCCGATCTACAAA
GAAGGGTCGAAAGTAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAGAATTCAAAGAGGT
GATGCCAGAAATGTTGCCTAAGGTTCTACCCCCTCGACGAGCAATGGACCATGAAATTGAGCTCC
TCCTAGGAACGAAACCCCCTGCTAGAGCTCCTTACCACATGGCCCCGCCAGAGTTGGCCGAACTA
AGAAAACAGTTAGATGAGCTGCTACC
Found at i:16034344 original size:26 final size:28
Alignment explanation
Indices: 16034288--16034346 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 28
16034278 ACTCTTTCTA
***
16034288 AAAAAGTTTTCAAAAAATCCTGAACCGT
1 AAAAAGTTTTCAAAAAATCCTGAAAAAT
*
16034316 AAAAAG-TTTC-AAAAATCGTGAAAAAT
1 AAAAAGTTTTCAAAAAATCCTGAAAAAT
16034342 AAAAA
1 AAAAA
16034347 CTGGTCATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 17 0.63
27 4 0.15
28 6 0.22
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.22
Consensus pattern (28 bp):
AAAAAGTTTTCAAAAAATCCTGAAAAAT
Found at i:16034575 original size:26 final size:26
Alignment explanation
Indices: 16034546--16034598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16034536 GTTGACTTAG
16034546 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16034572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16034598 G
1 G
16034599 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16034772 original size:26 final size:26
Alignment explanation
Indices: 16034743--16034795 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16034733 GTTGACTTAG
*
16034743 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
***
16034769 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16034795 G
1 G
16034796 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16034830 original size:197 final size:196
Alignment explanation
Indices: 16034506--16035271 Score: 817
Period size: 197 Copynumber: 3.9 Consensus size: 196
16034496 CCTCTCTGGT
* * * *
16034506 CGGCTGAGCACCCGCATGGTCATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTCT
1 CGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCT
* *
16034570 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCAAGGGTTGCGGTAGCAGGATCG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAA-GGTTGCGGTAGCAGGATCG
** * *
16034634 ACAGCACGCAAGGGGGATCGGGTCGATCCCCGGGTTACGCATTCTGCCTCTCCGACTGGCCTC-T
129 ACAGCACGCAAGGGGGATCGGG-CGATCCCCGACTTGCGCATTCTGTCTCTCCGACTGGCCTCTT
16034698 CTGGC
193 C-GGC
* * * * *
16034703 TGGCTAAGCGCCCGCATGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTA
1 CGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
** ** * * * * *
16034768 AGCATGTGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAAAGTTGCAGCAGTAGGATCGGC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGGTAGCAGGATCGAC
* ** * * * * * * **
16034833 AACACATAGAGGGGGATCGAGCCGATCGCCGACTTGCGCTTTCTATCTCTCTGGCCAGCCTCTTC
131 AGCACGCA-AGGGGGATCG-GGCGATCCCCGACTTGCGCATTCTGTCTCTCCGACTGGCCTCTTC
16034898 GGC
194 GGC
* * *
16034901 CGGCTGAGTGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * *
16034966 AGCATACGGAGTTCATTCCCAGTCTAAGCTCGGACCGGATCGAGGGTTGCGGTAGCAGGATTGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGGTAGCAGGATCGAC
* * * *
16035031 AGCATGCAAGAGGGATCGGGCTGATCCTCGACTTGCGCATTATGTCTC-CCTGA-TCGGCCTCTT
131 AGCACGCAAGGGGGATCGGGC-GATCCCCGACTTGCGCATTCTGTCTCTCC-GACT-GGCCTCTT
16035094 CGGC
193 CGGC
* * ** * *
16035098 CGGTTGAGCGGCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * * * * * *
16035163 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCAAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGGTAGCAGGATCGAC
** * *
16035228 AGCATAC-AGGGAAGATCGGGCTGATCCCC-AGCTTGTGCATTCTG
131 AGCACGCAAGGG-GGATCGGGC-GATCCCCGA-CTTGCGCATTCTG
16035272 CCCGTCCTAT
Statistics
Matches: 466, Mismatches: 93, Indels: 20
0.80 0.16 0.03
Matches are distributed among these distances:
196 7 0.02
197 296 0.64
198 160 0.34
199 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
CGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGGTAGCAGGATCGAC
AGCACGCAAGGGGGATCGGGCGATCCCCGACTTGCGCATTCTGTCTCTCCGACTGGCCTCTTCGG
C
Found at i:16034971 original size:26 final size:26
Alignment explanation
Indices: 16034941--16034994 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
16034931 GTTGACTTAG
16034941 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16034967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16034993 GC
1 GC
16034995 TCGGACCGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16035174 original size:26 final size:26
Alignment explanation
Indices: 16035138--16035190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16035128 GTTGACTTAG
16035138 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16035164 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16035190 G
1 G
16035191 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16036686 original size:159 final size:158
Alignment explanation
Indices: 16036496--16036871 Score: 386
Period size: 157 Copynumber: 2.4 Consensus size: 158
16036486 TCGACTGAGT
* * ** * *
16036496 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
** * * * * **
16036560 CCAGA-TCGAGGGTTATGGTAGCGGGACCGACAGCACGCATAGAG-GGATCGGGCCGATCCTTAG
66 CCAGACT-GAGGGTTACAGTAGCAGGACCGACAGCACGC-GAG-GTGGA-CCGACCGATCCCCAG
*
16036623 CTTGCGCATTATGCCTCTCCGGTCAGCTCAGC
127 CTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
* *
16036655 GCCCGTACGCTCGTTTCATGGGTTGAG-TTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCA
1 GCCCGTACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA
* * * * * * * *
16036717 GATCGGACTGAGGGTTGCAGTAGTAGGATCGATAGCATGCGAGGTGGACCGATCGATCCCCAGCT
64 GACCAGACTGAGGGTTACAGTAGCAGGACCGACAGCACGCGAGGTGGACCGACCGATCCCCAGCT
* * *
16036782 TGCGCATTCTGCCTCTCCGGCCGGCTGAGC
129 TGCGCATTATGCCTCTCCGGCCAGCTCAGC
* *
16036812 ACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCA
1 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16036872 TACAGAGTTC
Statistics
Matches: 178, Mismatches: 31, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
156 4 0.02
157 88 0.49
158 9 0.05
159 72 0.40
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CCAGACTGAGGGTTACAGTAGCAGGACCGACAGCACGCGAGGTGGACCGACCGATCCCCAGCTTG
CGCATTATGCCTCTCCGGCCAGCTCAGC
Found at i:16037101 original size:26 final size:26
Alignment explanation
Indices: 16037052--16037103 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16037042 TTGACTTAGT
* *
16037052 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACAGAGTTCATCCCTAATCTAAG
16037078 CATACAGAGTTCATTCCC-AATCTAAG
1 CATACAGAGTTCA-TCCCTAATCTAAG
16037104 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCTAATCTAAG
Found at i:16037574 original size:157 final size:156
Alignment explanation
Indices: 16037179--16037574 Score: 404
Period size: 157 Copynumber: 2.5 Consensus size: 156
16037169 CGTCTTACTT
* * * *
16037179 ATTCTACCTCTCTGATCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
1 ATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * * * * *
16037244 GTTCATTCCAGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACATAGAA
66 GTTCATTCCAGTCT-AGCCACAGCCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACA-ACAA
* *
16037309 GGGGATCGGGCCGATCCCCAGCTTGCGC
129 GGGGATCCGACCGATCCCCAGCTTGCGC
* * * * * * * *
16037337 ATTATGCCTCTCCGACCAGCTCAGTGCCCGTACGCTCATTTCATGGGTTGAG-TTAGGCGTACGG
1 ATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGG
* * * * * *
16037401 AGTTCATTCCCAGTCTAG-GATATGACCAGATCGAGGGTTGTGATAGTAGGATCGACAGCAC-AC
65 AGTTCATT-CCAGTCTAGCCACA-G-CCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACAAC
* *
16037464 AAGGTGGA-CCGATCGATCCCCGGCTTGCGC
127 AAGG-GGATCCGACCGATCCCCAGCTTGCGC
* ** *
16037494 ATTCTACCTCTCCGATTGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
16037559 GTTCATTCCATGTCTA
66 GTTCATTCCA-GTCTA
16037575 AGCATACAGA
Statistics
Matches: 191, Mismatches: 40, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 87 0.46
158 64 0.34
159 36 0.19
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (156 bp):
ATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCAGTCTAGCCACAGCCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACAACAAGG
GGATCCGACCGATCCCCAGCTTGCGC
Found at i:16037580 original size:26 final size:26
Alignment explanation
Indices: 16037550--16037602 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16037540 GTTGGCTTAG
*
16037550 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
16037576 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
16037602 G
1 G
16037603 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:16037893 original size:26 final size:26
Alignment explanation
Indices: 16037845--16037895 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16037835 TGGCTTAGGT
*
16037845 ATACGAAGTTCATTCCATGTCTAAGC
1 ATACGAAGTTCATTCCATATCTAAGC
16037871 ATACGAAGTTCATTCCCA-ATCTAAG
1 ATACGAAGTTCATT-CCATATCTAAG
16037896 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATATCTAAGC
Found at i:16038401 original size:158 final size:159
Alignment explanation
Indices: 16038021--16038418 Score: 380
Period size: 158 Copynumber: 2.5 Consensus size: 159
16038011 CGTACTCCTA
* * * * * *
16038021 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGGCCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCACGTCTAAGCCCCAGTC-GGACCGAGGGT
** * *
16038085 TGTGGCAGCAGGACCGGTATCGCACAGAGGGGGACCGGGTCGATCCCTGGCTTGCCCATTATGCC
65 TGCAGCAGCAGGACCGGTATCGCACAGAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTATACC
*
16038150 TCTCCGGCCAGCTCAGCGCCTGCACACTCC
130 TCTCCGGCCAGCTCAGCGCCCGCACACTCC
* * * ** * * *
16038180 TTTCGTGGGTTGACTTAGGCATACGGAGCTCA-TTCCCAGTCTAAG-AACAGATAGAACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCAC-GTCTAAGCCCCAG-TCGGACCGAGGG
* * * * * *
16038243 TTGCAGCAGCAGGATC-G-A-CAGCAC-GTAGGGGGGACCTGGTTGGTCCCCGGCTTGCGCATTC
64 TTGCAGCAGCAGGACCGGTATC-GCACAG-A-GGGGGACCGGGTCGATCCCCGGCTTGCCCATTA
* * * * *
16038304 TACCTCTCTGG-CAGGCTGAGTGCCCGCACGCTCG
126 TACCTCTCCGGCCA-GCTCAGCGCCCGCACACTCC
16038338 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCACGTCTAAGCCCCAGTCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCACGTCTAAGCCCCAGTCGGACCGAGGGTT
** *
16038403 GTGGTAGCAGGACCGG
66 GCAGCAGCAGGACCGG
16038419 CGTGGGATCG
Statistics
Matches: 187, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 8 0.04
158 114 0.61
159 63 0.34
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCACGTCTAAGCCCCAGTCGGACCGAGGGTT
GCAGCAGCAGGACCGGTATCGCACAGAGGGGGACCGGGTCGATCCCCGGCTTGCCCATTATACCT
CTCCGGCCAGCTCAGCGCCCGCACACTCC
Found at i:16038912 original size:26 final size:26
Alignment explanation
Indices: 16038883--16038936 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16038873 TGGGTTGACT
16038883 TAGGCATACGGAGTTCA-TCCCTAGTC
1 TAGGCATACGGAGTTCATTCCC-AGTC
16038909 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
16038935 TA
1 TA
16038937 AGATCAGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:16039086 original size:347 final size:346
Alignment explanation
Indices: 16038451--16039122 Score: 900
Period size: 347 Copynumber: 1.9 Consensus size: 346
16038441 GGGGGACCGA
* *
16038451 GCTGATCCCTGGCTTTCGCATTATGCCTCTCCGACCGACCTGTCTGGCCGACTGAGCACCCGCAC
1 GCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGACCTGTCTGGCCGACTGAGCACCCGCAC
* * *
16038516 GCTCGTTTTATGGGTTGACTTAGGCATATAGAGTCTAACCCTAGTCTAAGCATACAGAGTTCATT
66 ACTAGTTTTATGGGTTGACTTAGGCATACAGAGTCTAACCCTAGTCTAAGCATACAGAGTTCATT
* * * * * * *
16038581 CCCAATCTAAGATCAGACAGGACCGAGGGTTACAGCTGTAGGAACGATAGCATGCAGGGGGGACC
131 CCCAATCTAAGATCAGACAGAACCGAGGGTTACAGCAGTAAGAACGACAGCACGAAGAGGGGACC
* * * * * * *
16038646 AGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCTGTACGCTCATTTCGT
196 AGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACCCCCATTTCAT
* *
16038711 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAAGCCCCAGTCGGACCAAGGGTTGTGGCA
261 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAACCCCCAATCGGACCAA-GGTTGTGGCA
16038776 GGAAGACCGGCAGCGGGATCTG
325 GGAAGACCGGCAGCGGGATCTG
* * *
16038798 GCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCCTCT-TCGGCCGTCTGAGCACCCGCA
1 GCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGACCTGTCT-GGCCGACTGAGCACCCGCA
* * * * *
16038862 CACTAGTTTTGTGGGTTGACTTAGGCATACGGAGT-TCATCCCTAGTCTAGGCATACGGAGTTCA
65 CACTAGTTTTATGGGTTGACTTAGGCATACAGAGTCT-AACCCTAGTCTAAGCATACAGAGTTCA
* * * * * *
16038926 TTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGTAAGATCGACGGCACGAAGAGGGGA
129 TTCCCAATCTAAGATCAGACAGAACCGAGGGTTACAGCAGTAAGAACGACAGCACGAAGAGGGGA
* * * *
16038991 -CTGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACCCCCGTTT
194 CCAG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACCCCCATTT
* * * *
16039055 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAATCGGACCGAGGTTGTGG
258 CATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAACCCCCAATCGGACCAAGGTTGTGG
16039120 CAG
323 CAG
16039123 CGGGACTGGT
Statistics
Matches: 279, Mismatches: 43, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
346 15 0.05
347 264 0.95
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (346 bp):
GCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGACCTGTCTGGCCGACTGAGCACCCGCAC
ACTAGTTTTATGGGTTGACTTAGGCATACAGAGTCTAACCCTAGTCTAAGCATACAGAGTTCATT
CCCAATCTAAGATCAGACAGAACCGAGGGTTACAGCAGTAAGAACGACAGCACGAAGAGGGGACC
AGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACCCCCATTTCAT
GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAACCCCCAATCGGACCAAGGTTGTGGCAG
GAAGACCGGCAGCGGGATCTG
Found at i:16039416 original size:26 final size:26
Alignment explanation
Indices: 16039387--16039439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16039377 GTTGGCTTAG
16039387 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16039413 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16039439 G
1 G
16039440 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16040477 original size:196 final size:196
Alignment explanation
Indices: 16040143--16040510 Score: 463
Period size: 196 Copynumber: 1.9 Consensus size: 196
16040133 GACAGCACGT
* * * * * * *
16040143 AGGGGGGATCGGGCCGATCCCCAGCTTGCGCGTTCTCCCTCTCCAGCTGGCTGAGCGCTCGCACG
1 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCGATCTACCTCTCCAGCCGACTGAGCGCCCACACG
** * * * * * * *
16040208 CTTGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTTAGCATACAGAGTTTATTC
66 CTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTCAGCATACAGAGTTCATTC
* *
16040273 CCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGCAGGACCAGCGGCAGGATTGGCAGCATG
131 ACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCAGCGGCAGGATTGGCAGCATG
16040338 C
196 C
* **
16040339 AGGGGGGACCGGGTCGATCCCTGGCTTGCGC-ATCTACCTCTCC-GACCGACTGAGCGCCCACAC
1 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCGATCTACCTCTCCAG-CCGACTGAGCGCCCACAC
*
16040402 GCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCCA-GTCTCAGCATACGGAGTTCA
65 GCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCAT--CCCATGTCTCAGCATACAGAGTTCA
* * *
16040466 TTCATAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGA
128 TTCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGA
16040511 TCGACAGCAC
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
194 1 0.01
195 57 0.40
196 83 0.58
197 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
AGGGGGGACCGGGCCGATCCCCAGCTTGCGCGATCTACCTCTCCAGCCGACTGAGCGCCCACACG
CTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTCAGCATACAGAGTTCATTC
ACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCAGCGGCAGGATTGGCAGCATG
C
Found at i:16041292 original size:26 final size:26
Alignment explanation
Indices: 16041263--16041315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16041253 GTTAACTTAG
16041263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16041289 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16041315 G
1 G
16041316 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16041635 original size:26 final size:27
Alignment explanation
Indices: 16041598--16041648 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
16041588 TTTTGTGGGT
*
16041598 TGGCTTAGGCATACGGAGTTCATTCCA
1 TGGCTTAGGCATACAGAGTTCATTCCA
16041625 TGGC-TAGGCATACAGAGTTCATTC
1 TGGCTTAGGCATACAGAGTTCATTC
16041649 TAGTCTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (27 bp):
TGGCTTAGGCATACAGAGTTCATTCCA
Found at i:16042363 original size:26 final size:26
Alignment explanation
Indices: 16042327--16042379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16042317 GTTAACTTAG
16042327 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16042353 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16042379 G
1 G
16042380 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16043216 original size:159 final size:158
Alignment explanation
Indices: 16042861--16043239 Score: 372
Period size: 159 Copynumber: 2.4 Consensus size: 158
16042851 TAAGCATATG
** * * *
16042861 GAGTTCATTCTTAGTCTAAGATCAGACCGGATCGAAGGTTACGATAGTAGGATCGACAGCACGCG
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCG
* * * * *
16042926 GGGGGGACTGGGTCGATCCCCGACTTACGCAATCTGCCTCTCCGATCGGCCAAGCGCCCGTATGC
66 AGGGGGACTGGGTCGATCCCCGACTTACGCAATATGCCTCTCCGACCAGCCAAGCGCCCGTACGC
* * **
16042991 CCATTTCATGTGTTGGCTTAGGCATAGG
131 CCATTTCATGGGTTGACTTAGGCATACA
* ** * * * * * *
16043019 GAGTTCATT-CCATGTCTCAGCCCCAG-CCAGACCAAGGGTTGTGACAGTGGGATCGGCAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACG
* * *
16043082 CAGAGGGGGA-TCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCTG-CCAGCTC-AGCGCCC
64 C-GAGGGGGACT-GGGTCGATCCCCGACTTACGCAATATGCCTCTCC-GACCAGC-CAAGCGCCC
* ** *
16043144 GTACGCTCATTTTGTGGGTTGACTTAGGTATACA
125 GTACGCCCATTTCATGGGTTGACTTAGGCATACA
* * *
16043178 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCAC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCAC
16043240 ACATCGGGGG
Statistics
Matches: 171, Mismatches: 42, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.01
158 48 0.28
159 117 0.68
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCG
AGGGGGACTGGGTCGATCCCCGACTTACGCAATATGCCTCTCCGACCAGCCAAGCGCCCGTACGC
CCATTTCATGGGTTGACTTAGGCATACA
Found at i:16043216 original size:501 final size:502
Alignment explanation
Indices: 16042287--16043414 Score: 1331
Period size: 501 Copynumber: 2.2 Consensus size: 502
16042277 CCTCTCTGGT
* ** *
16042287 CGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCA-TCCCTAGTCT
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
* * * * * *
16042351 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCAGGATCGG
65 AAGCATATGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTACGATAGTAGGATCGA
* ** * * * **
16042416 TAGCACCCAGGGGGGACCGGGTCGATCCTTGGCTTGCGTAATCTGCCTCTCCGATCGACTGAGCG
130 CAGCACCCAGGGGGGACCGGGTCGATCCCCGACTTACGCAATCTGCCTCTCCGATCGACCAAGCG
** * *
16042481 CCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAGCC
195 CCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
** ** * * * *
16042546 GAACTGAGGGTTGTGGTAGCGGGACAGGCAGCTCGTAGAGGGGGATCAAGCTGATCCCTGGCTTT
260 GAACCAAGGGTTGTGACAGCGGGACAGGCAGCACGCAGAGGGGGATCAAGCTGATCCCTGACTTG
* * * *
16042611 CGTATTATGCTTCTCCGACTGACTCAGTGCCCGTACGCTCATTTCGTGGGTTAACTCAGGCATAC
325 CGCATTATGCCTCTCCGACAGACTCAGCGCCCGTACGCTCATTTCGTGGGTTAACTCAGGCATAC
** * * ***
16042676 GAAGTTCATTCCCAGTCTAAGATGGGACTGGACCGAGGGTTGCAG-AGCTGGATCAATAGCATGT
390 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAATAGCACAC
* * *
16042740 GT-GAGGGGA-TTGGGCCGGTCCCCAACTTGCGCATTCTGCCTCTCCGAC
455 ATCG-GGGGACCT-GGCCGGTCCCCAACTTACGCATTCTGCCTCTCCGAC
* * * * * * *
16042788 TGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGGCTTAGGTATATGGGGTTCATTCCATGTCTA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
16042853 AGCATATGGAGTTCATTCTTAGTCTAAGATCAGACCGGATCGAAGGTTACGATAGTAGGATCGAC
66 AGCATATGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTACGATAGTAGGATCGAC
* * * *
16042918 AGCACGCGGGGGGGACTGGGTCGATCCCCGACTTACGCAATCTGCCTCTCCGATCGGCCAAGCGC
131 AGCACCCAGGGGGGACCGGGTCGATCCCCGACTTACGCAATCTGCCTCTCCGATCGACCAAGCGC
* * *
16042983 CCGTATGCCCATTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGCC-
196 CCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
16043047 AGACCAAGGGTTGTGACAGTGGGATC-GGCAGCACGCAGAGGGGGATC-GGGTCGATCCCTGACT
261 A-ACCAAGGGTTGTGACAGCGGGA-CAGGCAGCACGCAGAGGGGGATCAAGCT-GATCCCTGACT
* * * * *
16043110 TGCGCATTATGCCTCTCCTGCCAG-CTCAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGTA
323 TGCGCATTATGCCTCTCC-GACAGACTCAGCGCCCGTACGCTCATTTCGTGGGTTAACTCAGGCA
* * *
16043174 TAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGC
387 TACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAATAGC
* ** * * *
16043238 ACACATCGGGGGACCTGGTCGGTCCCCAGTTTATGCATTCTGCCTCTCTGGC
451 ACACATCGGGGGACCTGGCCGGTCCCCAACTTACGCATTCTGCCTCTCCGAC
* * * *
16043290 CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCATATCTA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
16043355 AGCCTACGGAGTTCTTTCTCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGGTAGTAGGA
66 AGCATATGGAGTTCATTCTCAGTCTAAGATCAGACCAGATC-GAGGGTTACGATAGTAGGA
16043415 CCAGCAGCAA
Statistics
Matches: 521, Mismatches: 96, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
500 4 0.01
501 353 0.68
502 162 0.31
503 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (502 bp):
CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATATGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTACGATAGTAGGATCGAC
AGCACCCAGGGGGGACCGGGTCGATCCCCGACTTACGCAATCTGCCTCTCCGATCGACCAAGCGC
CCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
AACCAAGGGTTGTGACAGCGGGACAGGCAGCACGCAGAGGGGGATCAAGCTGATCCCTGACTTGC
GCATTATGCCTCTCCGACAGACTCAGCGCCCGTACGCTCATTTCGTGGGTTAACTCAGGCATACG
AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCAATAGCACACA
TCGGGGGACCTGGCCGGTCCCCAACTTACGCATTCTGCCTCTCCGAC
Found at i:16043577 original size:26 final size:26
Alignment explanation
Indices: 16043527--16043579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043517 ATTATCTTAG
*
16043527 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16043553 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16043579 G
1 G
16043580 ATTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16044096 original size:11 final size:11
Alignment explanation
Indices: 16044080--16044112 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16044070 CCCGGGGCAC
16044080 CATCGTCGGAG
1 CATCGTCGGAG
*
16044091 CATCGTCAGAG
1 CATCGTCGGAG
16044102 CATCGTCGGAG
1 CATCGTCGGAG
16044113 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16045069 original size:26 final size:26
Alignment explanation
Indices: 16045033--16045085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045023 GTTGACTTAT
*
16045033 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16045059 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16045085 G
1 G
16045086 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16045292 original size:343 final size:343
Alignment explanation
Indices: 16044660--16045402 Score: 981
Period size: 343 Copynumber: 2.2 Consensus size: 343
16044650 CAGCTGAGTG
* * * * * * *
16044660 CCCGCACGCTCGTTTCGTGAGATGACTTAGGCATACGGAGTTCATTCGTAGTCCAAGCATATGAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGCATAAGAA
* * *
16044725 GTTCATTCTCAATCTAAGATCCAACCGGACCAACGGTTGCGACAGCAGGATCGACAGCACGTAGG
66 GTTCATTCCCAATCTAAGATCCAACCGGACCAACGGTTACGACAGCAGGATCGACAGCACGCAGG
* * * * * * *
16044790 GTGGATCGGGCTGATCCCTGGCTTGCGCATTCTTCCTCTCCGGTCGGCTGAGCACCCGCATGCCC
131 GTGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCCC
* * * * *
16044855 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGTCAGACCGAGGGT
196 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACCGAGGAT
* ** *
16044920 TGTGGCTACGGGTTCGGCAGCAAGCAGAGGGGGACCTG-GCCGATCCTCGGCTTACGCATTATGC
261 TGTGGCAACGGGACCGGCAGCAAGCAGAGGGGGACC-GAGCCGATCCTCGACTTACGCATTATGC
*
16044984 CTCTTCGACCGACTCAGCA
325 CTCTTCGACCGACTCAACA
* *
16045003 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAATCTAAGCATACAG-
1 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGCATA-AGA
* * * * **
16045067 AGTTCATTCCCAGTCTAAGAT-CAGACCGGACCGAGGGTTACGACGGCAGGATCGGTAGCACGCA
65 AGTTCATTCCCAATCTAAGATCCA-ACCGGACCAACGGTTACGACAGCAGGATCGACAGCACGCA
*
16045131 GAGG-GGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
129 G-GGTGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACG
* *
16045195 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTATGCCCTAGTCAGATCGAG
193 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACCGAG
* * * *
16045260 GATTGTGGCAACTGGACCGGCAGCATGCAGAGGGGGATCGAGCCGATCCTCGACTTGCGCATTAT
258 GATTGTGGCAACGGGACCGGCAGCAAGCAGAGGGGGACCGAGCCGATCCTCGACTTACGCATTAT
* * * *
16045325 GCCTCTTCGGCTGGCTCAACG
323 GCCTCTTCGACCGACTCAACA
* **
16045346 CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACATAGTTCATTCCTAATCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAG
16045403 ATCAGACCGG
Statistics
Matches: 345, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
342 3 0.01
343 339 0.98
344 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (343 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGCATAAGAA
GTTCATTCCCAATCTAAGATCCAACCGGACCAACGGTTACGACAGCAGGATCGACAGCACGCAGG
GTGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCCC
ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCTAGTCAGACCGAGGAT
TGTGGCAACGGGACCGGCAGCAAGCAGAGGGGGACCGAGCCGATCCTCGACTTACGCATTATGCC
TCTTCGACCGACTCAACA
Found at i:16045425 original size:159 final size:158
Alignment explanation
Indices: 16045059--16045552 Score: 464
Period size: 158 Copynumber: 3.1 Consensus size: 158
16045049 CCCAATCTAA
* ** * * *
16045059 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACGGCAGGATCGGTA
1 GCATACAGAGTTCATT-CCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
16045124 GCACGCAGA-GGGGATC-AGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-TCGACTGAGC
65 GCATGCAGAGGGGGATCGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCT-GGCTGAAC
* * *
16045186 GCCCGCACGCCCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAT
** * ** * * * * * * *
16045217 GCATAGGGAGTTCATTCCATATCTATGCCCTAG-TCAGATCGAGGATTGTGGCAACTGGACCGGC
1 GCATACAGAGTTCATTCCA-ATCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * *
16045281 AGCATGCAGAGGGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGCTGGCTCAACG
64 AGCATGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAACG
*
16045346 CCCGCACGCTCGTTTCATGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAT
* * * **
16045376 GCATACATAGTTCATTCCTAATCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAAGATCAACA
1 GCATACAGAGTTCATTCC-AATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * **
16045441 GTACAT--AG-GGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTACCTC-TCTGACCAGCTGAA
65 G--CATGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTC-GGCTGGCTGAA
* *
16045502 CGCCTGTACGCTCGTTTCATGGGTTGGCTTAT
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAT
16045534 GCATACAGAGTTCATTCCA
1 GCATACAGAGTTCATTCCA
16045553 CGTCTAAGCA
Statistics
Matches: 266, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 136 0.51
159 118 0.44
160 3 0.01
161 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CATGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAACGCC
CGCACGCTCGTTTCATGGGTTGGCTTAT
Found at i:16045564 original size:26 final size:26
Alignment explanation
Indices: 16045534--16045586 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045524 GTTGGCTTAT
16045534 GCATACAGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16045560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16045586 G
1 G
16045587 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16046616 original size:26 final size:26
Alignment explanation
Indices: 16046586--16046638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16046576 GTTGACTTAT
16046586 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16046612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16046638 G
1 G
16046639 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16046859 original size:330 final size:339
Alignment explanation
Indices: 16046214--16046942 Score: 841
Period size: 330 Copynumber: 2.2 Consensus size: 339
16046204 TCGGCTGAGT
* * * *
16046214 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* ** * *
16046279 AGTTTATTCTTAGTCTAAGATCGAACCGGACCGATGGTTGCGATAGTAGGATCGATAGCACGCGG
66 AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGA-AGCAGGA-CGATAGCACGCGG
* * * *
16046344 GGGACCGGGCCGATGCCAGGCTTACGCATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCCCA
129 GGGACCAGGCCGATCCCAGACTTACGCATTCTACCTCTACGACCGGCTGAGCACCCGCACGCCCA
* * * * * *
16046409 TTTCGTGGGTTGGCTTAGGCATAGCTAGTTTATTCCATGTCTAAGCCCCAGTAGGATCGAGGGTT
194 TTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCAAGGGTT
* * * ** * ***
16046474 GTGGCTGCGGTTCTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCT
259 GTGACAGCGGATCTGACAGCACGCAGAGGGGGACCGAGCCGATCCCCAACTTGCGCATTATGCCT
* *
16046539 CTTCGACCGGCTTAGA-
324 CTTCGACCAGCTCA-AC
**
16046555 GCCCTTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
16046620 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-A-CA-G-C-A-CGCA-G-GGGG
66 AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGAAGCAGGACGATAGCACGCGGGG
** ** * * * *
16046677 GACCAGGCCGATCCCCTACTTGTGC-TTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCCCGTT
131 GACCAGGCCGATCCCAGACTTACGCATTCTACCTCTACGACCGGCTGAGCACCCGCACGCCCATT
* * * *
16046741 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCTAGTCGAACCAAGGGTTGT
196 TCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCAAGGGTTGT
* * *
16046806 GACAGCTGGATC-GACAGCATGCAGAGGGGGATCGAGCCGATCCCCAACTTGCGCATTGTGCCTC
261 GACAGC-GGATCTGACAGCACGCAGAGGGGGACCGAGCCGATCCCCAACTTGCGCATTATGCCTC
* *
16046870 TTCGGCTAGCTCAAC
325 TTCGACCAGCTCAAC
* * * * *
16046885 GCTCGCATGCTCGTTTAATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAG
16046943 ATCGGGCTGG
Statistics
Matches: 328, Mismatches: 58, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
329 1 0.00
330 196 0.60
331 26 0.08
332 1 0.00
333 3 0.01
334 1 0.00
335 1 0.00
337 1 0.00
338 1 0.00
339 1 0.00
341 96 0.29
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (339 bp):
GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGAAGCAGGACGATAGCACGCGGGG
GACCAGGCCGATCCCAGACTTACGCATTCTACCTCTACGACCGGCTGAGCACCCGCACGCCCATT
TCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCAAGGGTTGT
GACAGCGGATCTGACAGCACGCAGAGGGGGACCGAGCCGATCCCCAACTTGCGCATTATGCCTCT
TCGACCAGCTCAAC
Found at i:16054151 original size:26 final size:26
Alignment explanation
Indices: 16054122--16054174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16054112 GTTGACTTAG
*
16054122 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16054148 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16054174 G
1 G
16054175 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16054515 original size:171 final size:169
Alignment explanation
Indices: 16054184--16054515 Score: 382
Period size: 170 Copynumber: 2.0 Consensus size: 169
16054174 GATCAGATCA
* * ** *
16054184 GACCGAGGGTTGCGGTAGCAGGACCATTAGCAGGATCGGTAACACGCAGAAGGGATCGGGCCGAT
1 GACCAAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAACACGCAGAAGGGATCGGGCCGAT
* * ** * * *
16054249 CCCCGGCTTGCGCATTCTGCTCTCCGGTCGGCTTGAGCGCCCGCACACTCATTTCGTGGTTGGCT
66 CCCCGGCTTGCACATTATGCTCTCCGACCAGCTTGAGCGCCCGCACACTCATTTCATGGTTGACT
* * *
16054314 TAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCG
131 TAGGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCG
* * * * * *
16054353 GACCAAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGCAGCACGCAGAAAGGGGTCGGGCTGA
1 GACCAAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAACACGCAG-AAGGGATCGGGCCGA
* **
16054418 TCCTCGGCTTGCACATTATGTCTCTCCGACCAGC-TGAGC-CCTCGCATGCTCATTTCATGGGTT
65 TCCCCGGCTTGCACATTATG-CTCTCCGACCAGCTTGAGCGCC-CGCACACTCATTTCAT-GGTT
16054481 GACTTAGGCATACGAAGTTCATCCTCA-GTCTAAGC
127 GACTTAGGCATACGAAGTTCATCC-CATGTCTAAGC
16054516 ATACGGAGTT
Statistics
Matches: 134, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
169 42 0.31
170 48 0.36
171 42 0.31
172 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (169 bp):
GACCAAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAACACGCAGAAGGGATCGGGCCGAT
CCCCGGCTTGCACATTATGCTCTCCGACCAGCTTGAGCGCCCGCACACTCATTTCATGGTTGACT
TAGGCATACGAAGTTCATCCCATGTCTAAGCCCCAGCCG
Found at i:16054518 original size:26 final size:26
Alignment explanation
Indices: 16054488--16054540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16054478 GTTGACTTAG
16054488 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
16054514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16054540 G
1 G
16054541 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16055134 original size:26 final size:26
Alignment explanation
Indices: 16055095--16055147 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16055085 GTTGACTTAG
*
16055095 GCATACGAAATTCATCCCCCGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
16055121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
16055147 G
1 G
16055148 ATCAATCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:16055601 original size:26 final size:26
Alignment explanation
Indices: 16055565--16055617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16055555 GTTGGCTTAG
**
16055565 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16055591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16055617 G
1 G
16055618 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16056458 original size:26 final size:26
Alignment explanation
Indices: 16056429--16056481 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056419 GTTGGCTTAG
16056429 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16056455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16056481 G
1 G
16056482 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16057148 original size:26 final size:26
Alignment explanation
Indices: 16057119--16057171 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16057109 GTTGACTTAG
*
16057119 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16057145 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16057171 G
1 G
16057172 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16058954 original size:26 final size:26
Alignment explanation
Indices: 16058916--16058968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058906 CCAATTTGAT
*
16058916 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
16058942 CTTAGAC-ATGGAATAAACTCTGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
16058968 C
1 C
16058969 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:16059385 original size:513 final size:508
Alignment explanation
Indices: 16058417--16059503 Score: 1134
Period size: 513 Copynumber: 2.1 Consensus size: 508
16058407 NNNNNNACTG
* * **
16058417 GGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
1 GGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGA
** * *
16058482 GCGTACGGGCACTCAGTCGACCGGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCCTACGTGC
66 GCGTACGGGCACTCAACCGACCGGAAGGCACAAGCTGGGGATCGGCCCGGTCCCCCCCTACATGC
**
16058547 TATCGATCCTGCTAATGCAACCCTCAGTCTTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
131 TATCGATCCTGCTAATGCAACCCTCAGTCTTGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16058612 CATAAGTCAACCCATGAAACGAGCGTGCGGGAGTTGAGCCGACTGAAGAGGCATAATGCGCAAGA
196 CATAAGTCAACCCACGAAACGAGCGTACGGCAGTCGAGCCGACTGAAGAGGCATAATGCGCAAGA
* ** * * * * *
16058677 CAGAGATCGGCCCAATCCCCCTATGTGTGTTGCCAGTCCCACTACCATAACCCTCGGTTCGGCTG
261 CAGAGATCGACCCAATCCCCCTATACGTGCTACCAGTCCCACTACCACAACCCTCGGTTCGACTC
* * *
16058742 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGCGCT
326 AGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTACGGGCGCT
* ** * * *
16058807 CAGCCGATTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCACCTGCGTGATATCGA
391 CAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCACATACGTGATATCGA
16058872 TCTTGCAACTGGTCCTGCTGTCGCAACCCTCGATCCAATTTGATCTTAGACTA
456 TCTTGCAACTGGTCCTGCTGTCGCAACCCTCGATCCAATTTGATCTTAGACTA
*
16058925 GGAATGAACTCCGTATGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACAAAACGA
1 GGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGA
** * *
16058990 GCGTACGGGTGCTCAACCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGT-CCCCC
66 GCGTACGGGCACTCAACCGACCGGA-AGGCACAA-GC-T--G--G-GGATCGGCCCGGTCCCCCC
* * * * * *
16059054 CTGCATGTTGTCGATCCTGCT-GTGCAACCCTCGGTC-TGGTCCAATCTTAGACTGGGAATGAAC
123 CTACATGCTATCGATCCTGCTAATGCAACCCTCAGTCTTGATCCAATCTTAGACTGGGAATGAAC
* * * * *
16059117 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCA-TCGAGTCG-GTCGGAGAGGCGTA
188 TCCGTATGCATAAGTCAACCCACGAAACGAGCGTACG-GCAGTCGAGCCGACT-GAAGAGGCATA
* * * * * * * * * *
16059180 ATGCGCAAGCCGGGGATCGACCCAGTCCCTCTCTACGTGCTACTAGTCTCGCTACCCCAACCCTC
251 ATGCGCAAGACAGAGATCGACCCAATCCCCCTATACGTGCTACCAGTCCCACTACCACAACCCTC
* * * *** *
16059245 GG-TCTGAC-CAGGGCTTTGACATGGAATAAACTCCCTATGCCTAGGCCAACCCATGAAATGGGC
316 GGTTC-GACTCAGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGA
* * *
16059308 GTACGGGGTGCTCAACC-AGCCGGAGAGGCAGAATGCGCAAGTC-GAGGATCGCCCCGATCCTC-
380 GTAC-GGGCGCTCAACCGA-CCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCC-CA
* * * * ** *
16059370 CATACGTGCTATCGATCTTG---CT-G--CTAC--T-GCAAACCTCGGTCCGGTCTGATCTTAGA
441 CATACGTGATATCGATCTTGCAACTGGTCCTGCTGTCGCAACCCTCGATCCAATTTGATCTTAGA
* *
16059426 TTG
506 CTA
* * * * * * *
16059429 GGAATGAACTCTGTATGCTTAGA-ATAGGGATGAAGTCCGTATGCCAAAGTCAACCCACGAAACG
1 GGAATGAACTCCGTATGCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACG
*
16059493 AGCGTGCGGGC
65 AGCGTACGGGC
16059504 GTTCAGCCGA
Statistics
Matches: 477, Mismatches: 86, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
503 2 0.00
504 86 0.18
505 1 0.00
507 3 0.01
508 80 0.17
509 7 0.01
510 4 0.01
511 1 0.00
512 53 0.11
513 188 0.39
514 16 0.03
515 23 0.05
516 13 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (508 bp):
GGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGA
GCGTACGGGCACTCAACCGACCGGAAGGCACAAGCTGGGGATCGGCCCGGTCCCCCCCTACATGC
TATCGATCCTGCTAATGCAACCCTCAGTCTTGATCCAATCTTAGACTGGGAATGAACTCCGTATG
CATAAGTCAACCCACGAAACGAGCGTACGGCAGTCGAGCCGACTGAAGAGGCATAATGCGCAAGA
CAGAGATCGACCCAATCCCCCTATACGTGCTACCAGTCCCACTACCACAACCCTCGGTTCGACTC
AGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGTACGGGCGCT
CAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCACATACGTGATATCGA
TCTTGCAACTGGTCCTGCTGTCGCAACCCTCGATCCAATTTGATCTTAGACTA
Found at i:16060658 original size:158 final size:158
Alignment explanation
Indices: 16060136--16060955 Score: 565
Period size: 159 Copynumber: 5.2 Consensus size: 158
16060126 ATGGCTCAAA
* * * ** **
16060136 ATCTTAGA-TAGGAATGAACACCGCATGCCTAACCCAACCCGTGAAACGAGCGTGCGGGCACTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * *
16060200 GTCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGAT
66 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGT-CCCCCCTGCGTACTGTCGAT
* * *
16060265 CCTGCTGCAGCAACCCTCGG-TCTGGTCTA
130 CCTACTGCCGCAACCCTCGGTTC-GGTCTG
* * * * * **
16060294 ATCTTAGACT-GAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGAGCAG
1 ATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* ** * *
16060358 AGCCGATCGAAGAGGCATAATTTGCAAGCCGGGGATCAGCTCGGT-CCCCCT--GTACGTGCTAC
65 AGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTAC-TG-T-C
* * *
16060420 TGGTCCTACTGCCACAACCCTCAGTTCGG-CTGG
127 -GATCCTACTGCCGCAACCCTCGGTTCGGTCT-G
** *
16060453 GGCTTAGAC-ATGGAATGAACTCAC-TATG-CTAAAGCCAACCCACGAAACGAGCGTGCGGGTGT
1 ATCTTAGACTA-GGAATGAACTC-CGTATGCCT-AAGCCAACCCACGAAACGAGCGTGCGGGTGC
** * * * *
16060515 TCAGTTGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCTTGATCCCCCCTGCGTACTGTCG
63 TCAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTACTGTCG
* *
16060580 ATCCTACTACCGCAACCCTTGGTTCGGTCTG
128 ATCCTACTGCCGCAACCCTCGGTTCGGTCTG
* * * * *
16060611 ATCTTTGACTAGGAATGAACTCCGAATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGTGCTGA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * ** * * * * *
16060676 GCTG-GCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCATGCTGTCGG
66 GCCGATC-GGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCC-CCCTGCGTACTGTCGA
** * * *
16060740 TCCCGCTGCCACAACCCTAGGTTTGG-CTGG
129 TCCTACTGCCGCAACCCTCGGTTCGGTCT-G
** * * * * * *
16060770 GGCTTAGAC-ATGCAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGCGCTGGTGCTC
1 ATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * ** * * *
16060834 AGTCGACCGGAGAGGCAGAATGCGTAAGCCAGGGAAT-GGCCCGGT-CCCCCTTCGTGCTATCGA
65 AGCCGATCGGAGAGGCATAATGCGCAAGCC-GGGGATCGGCTTGGTCCCCCCTGCGTACTGTCGA
* * * * **
16060897 TCCTACTGTCGTAACCCTTGGTCCGGTCCA
129 TCCTACTGCCGCAACCCTCGGTTCGGTCTG
* *
16060927 ATCTTAGGCT-GAGAATGAACTCCATATGC
1 ATCTTAGACTAG-GAATGAACTCCGTATGC
16060956 TTAGATTGGG
Statistics
Matches: 512, Mismatches: 122, Indels: 57
0.74 0.18 0.08
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 59 0.12
158 131 0.26
159 293 0.57
160 17 0.03
161 2 0.00
162 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTACTGTCGATC
CTACTGCCGCAACCCTCGGTTCGGTCTG
Found at i:16060751 original size:317 final size:318
Alignment explanation
Indices: 16060160--16060949 Score: 855
Period size: 317 Copynumber: 2.5 Consensus size: 318
16060150 TGAACACCGC
* ** ** ***
16060160 ATGCCTAACCCAACCCGTGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGTGTA
1 ATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCACA
* * * * *
16060225 AGCTGGGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCAGCAACCCTCGGTCTGG
66 AGCCGGGGATCGGCCTGATCCCCCCCTGCGTACTGTCGATCCTACTACAGCAACCCTCGGTCTGG
* * *
16060290 TCTAATCTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGAG
131 TCTAATCTTAGACTGAGAATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCGGGAG
** * * * *
16060355 CAGAGCCGATCGAAGAGGCATAATTTGCAAGCCGGGGATCAGCTCGGTCCCCCTGTACGTGCTAC
196 CAGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTAC
* *
16060420 TGGTCCTACTGCCACAACCCTCA-GTTCGGCTGGGGCTTAGACATGGAATGAACTCACT
261 TGGTCCCACTGCCACAACCCT-AGGTTCGGCTGGGGCTTAGACATGCAATGAACTCACT
* * ** *
16060478 ATG-CTAAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAGTTGGTCGGAGAGGCAAAATGCAC
1 ATGCCTAAA-CCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCAC
* * *
16060542 AAGCCGGGGATCGGCTTGAT-CCCCCCTGCGTACTGTCGATCCTACTACCGCAACCCTTGGT-TC
65 AAGCCGGGGATCGGCCTGATCCCCCCCTGCGTACTGTCGATCCTACTACAGCAACCCTCGGTCT-
* * * *
16060605 GGTCTGATCTTTGACT-AGGAATGAACTCCGAATGCCTAAGTCAACTCACGAAACGAGCGTGCGG
129 GGTCTAATCTTAGACTGA-GAATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *
16060669 GTGCTGAGCTG-GCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCATG
193 GAGCAGAGCCGATC-GAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATG
* * * *
16060733 CT-GTCGGTCCCGCTGCCACAACCCTAGGTTTGGCTGGGGCTTAGACATGCAATGAACTCCCT
257 CTACT-GGTCCCACTGCCACAACCCTAGGTTCGGCTGGGGCTTAGACATGCAATGAACTCACT
* * * **
16060795 ATGCCTAAACCAACCCACGAAACGGGCGCGCTGGTGCTCAGTCGACCGGAGAGGCAGAATGCGTA
1 ATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCACA
* * * * * * * * * *
16060860 AGCCAGGGAAT-GGCCCGGT--CCCCCTTCGTGCTATCGATCCTACTGTC-GTAACCCTTGGTCC
66 AGCC-GGGGATCGGCCTGATCCCCCCCTGCGTACTGTCGATCCTACT-ACAGCAACCCTCGGTCT
* *
16060921 GGTCCAATCTTAGGCTGAGAATGAACTCC
129 GGTCTAATCTTAGACTGAGAATGAACTCC
16060950 ATATGCTTAG
Statistics
Matches: 390, Mismatches: 71, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
316 61 0.16
317 256 0.66
318 73 0.19
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (318 bp):
ATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCACA
AGCCGGGGATCGGCCTGATCCCCCCCTGCGTACTGTCGATCCTACTACAGCAACCCTCGGTCTGG
TCTAATCTTAGACTGAGAATGAACTCCGAATGCATAAGTCAACCCACGAAACGAGCGTGCGGGAG
CAGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTAC
TGGTCCCACTGCCACAACCCTAGGTTCGGCTGGGGCTTAGACATGCAATGAACTCACT
Found at i:16062048 original size:26 final size:26
Alignment explanation
Indices: 16062010--16062062 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16062000 CTAGTTTGAT
16062010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16062036 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16062062 C
1 C
16062063 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16062528 original size:26 final size:26
Alignment explanation
Indices: 16062499--16062551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16062489 CCGATCCGAT
16062499 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* **
16062525 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
16062551 C
1 C
16062552 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:16068643 original size:158 final size:157
Alignment explanation
Indices: 16068226--16068722 Score: 491
Period size: 159 Copynumber: 3.1 Consensus size: 157
16068216 AAATCTTAGG
*
16068226 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAACCGGCCG
1 CTGGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCG
* * * * * *
16068291 AAAAGGTAGAATGCGCAAGTCAGGGATCAGCTCGATCCCCCTCTGTGTGCTGTCGATCCTGCTAC
65 AAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGAT-CCCCTCTGCGTGCTGTCGATCCTGCTGC
* * ** * * *
16068356 TGTAACCCTTGGTCCGGTCTAATCTTAGA
129 CGCAACCCTCAGTCCAGTCTAAGCTTACA
* * * * * * *
16068385 CTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGTGTGCGGGCACTGAGCCGACCG
1 CTGGGAATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCG
* * * * * *
16068450 AAGAGGCATAATGCGCAAGCC-GAAGATCGGCCCGATCCCTCTTTGCGTGCTGTCGGTCTTGCTG
65 AAGAGGCAGAATGCGCAAGCCAG-GGATCAGCCCGATCCC-CTCTGCGTGCTGTCGATCCTGCTG
* **
16068514 CCACAACCCTCAGTCCAGT-TGGGGCTTACA
128 CCGCAACCCTCAGTCCAGTCT-AAGCTTACA
* * ** *
16068544 CAT-GGAATGAACTCCCTATGCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGTCG
1 C-TGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCG
* * *
16068608 GAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTG-CAGATCCTGCTGC
65 AAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCTCTGCGTGCTGTC-GATCCTGCTGC
** * *
16068672 CGCAACCCTCAGTCTCA-TCCGATCTTAGA
129 CGCAACCCTCAGTC-CAGTCTAAGCTTACA
*
16068701 CTGAGAATGAACTCCGTATGCT
1 CTGGGAATGAACTCCGTATGCT
16068723 TAGACTGGGG
Statistics
Matches: 270, Mismatches: 58, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 57 0.21
158 72 0.27
159 138 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTGGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGA
AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCTGCCG
CAACCCTCAGTCCAGTCTAAGCTTACA
Found at i:16068724 original size:26 final size:26
Alignment explanation
Indices: 16068695--16068747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16068685 CTCATCCGAT
16068695 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
16068721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16068747 C
1 C
16068748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16070031 original size:26 final size:26
Alignment explanation
Indices: 16069980--16070032 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16069970 CTGGTCCGAT
*
16069980 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16070006 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16070032 C
1 C
16070033 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16070034 original size:197 final size:197
Alignment explanation
Indices: 16069694--16070063 Score: 488
Period size: 197 Copynumber: 1.9 Consensus size: 197
16069684 CTCAGCCGAC
** * * * * * *
16069694 CGGAGAGGCAGAATGTGCAAGCCGAGGTTCGACTCGATCCCCCCAGCGTGCTGCCGATCCTGCTG
1 CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCAGCATGCTACCGATCCTACTG
* * * * *
16069759 CCATAACCCTCAATCTGGTTCAATCTTAGATTGGGAATGAACTCTGTATGCTTAAACTAGGGATG
66 CCACAACCCTCAATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGGATG
* * * *
16069824 AACTCCGTATGCCTATGTTAACCCACAAAATGAGCATACGGACGCTTAGCCTATCAGATAGATTG
131 AACTCCATATGCCTAAGTCAACCCACAAAACGAGCATACGGACGCTTAGCCTATCAGATAGATTG
16069889 AT
196 AT
* * *
16069891 CGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCCACCTGCATGCTATCGATCCTACTG
1 CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCAGCATGCTACCGATCCTACTG
* ** * * *
16069956 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATG
66 CCACAACCCTCAATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGGATG
* *
16070021 AACTTCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGAC
131 AACTCCATATGCCTAAGTCAACCCACAAAACGAGCATACGGAC
16070064 ACTCAGTCGA
Statistics
Matches: 145, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
197 145 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (197 bp):
CGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCAGCATGCTACCGATCCTACTG
CCACAACCCTCAATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGGATG
AACTCCATATGCCTAAGTCAACCCACAAAACGAGCATACGGACGCTTAGCCTATCAGATAGATTG
AT
Found at i:16070752 original size:26 final size:26
Alignment explanation
Indices: 16070714--16070766 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16070704 GGCTCAAACT
* *
16070714 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
16070740 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
16070766 C
1 C
16070767 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:16071032 original size:158 final size:158
Alignment explanation
Indices: 16070739--16071041 Score: 419
Period size: 158 Copynumber: 1.9 Consensus size: 158
16070729 AACTCTGTAT
* * * *
16070739 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGGAATGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
* * * ** * *
16070804 CCGGTCAAAGTGGCAGAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCAGTCC
66 CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAGTCC
*
16070869 CGCTGCCATAACCCTTGGTTTGATTGGG
131 CGCTGCCACAACCCTTGGTTTGATTGGG
* *
16070897 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
* * **
16070962 CCGGTCAGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTGTGTGCTGCC-GATC
66 CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAG-TC
*
16071026 CTGCTGCCACAACCCT
130 CCGCTGCCACAACCCT
16071042 CAGTCCGGTT
Statistics
Matches: 125, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
157 1 0.01
158 124 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAGTCC
CGCTGCCACAACCCTTGGTTTGATTGGG
Found at i:16071060 original size:158 final size:158
Alignment explanation
Indices: 16070739--16071082 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 158
16070729 AACTCTGTAT
* * * *
16070739 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGGAATGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
* * * ** * *
16070804 CCGGTCAAAGTGGCAGAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCAGTCC
66 CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAGTCC
* ** ** * *
16070869 CGCTGCCATAACCCTTGGTTTGATTGGG
131 CGCTGCCACAACCCTCAGTCCGATTCGA
* *
16070897 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
* * **
16070962 CCGGTCAGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTGTGTGCTGCC-GATC
66 CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAG-TC
* *
16071026 CTGCTGCCACAACCCTCAGTCCGGTTCGA
130 CCGCTGCCACAACCCTCAGTCCGATTCGA
* *
16071055 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16071083 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
157 2 0.01
158 153 0.99
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAG
CCGGTCAAAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCATGCTGCCAGTCC
CGCTGCCACAACCCTCAGTCCGATTCGA
Found at i:16071085 original size:26 final size:26
Alignment explanation
Indices: 16071056--16071108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071046 CCGGTTCGAT
*
16071056 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16071082 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16071108 C
1 C
16071109 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16077802 original size:26 final size:26
Alignment explanation
Indices: 16077762--16077813 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16077752 TGGTTTGATT
* *
16077762 TTAGGCTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
*
16077788 TTAGACTGGGGATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCGCATGC
16077814 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGCATGC
Found at i:16078095 original size:196 final size:196
Alignment explanation
Indices: 16077729--16078113 Score: 513
Period size: 196 Copynumber: 2.0 Consensus size: 196
16077719 GTGTTATCGA
* *
16077729 TCCTGCTGCCATAACCCTCGGTCTGGTTTGATTTTAGGCTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCTGGTTTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGAC
* * * *
16077794 TGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGATCGG
66 TGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGG
* ** * *
16077859 AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCTTCCGTGCTATCGATCCTATTGCTG
131 AGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTTACGTGCTATCGACCCTATTGCTG
16077924 G
196 G
* * *
16077925 TCCTGCTGCCGCAACCCTCGGTTTGGTTTGATCTT-GGACTGGGATTGAACTCCGTATGCTTAGA
1 TCCTGCTGCCACAACCCTCGGTCTGGTTTGATCTTAGG-CTGGGAATGAACTCCGTATGCTTAGA
* ** * *
16077989 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAATCGGCC
65 C-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACC
* * ** * *
16078053 GGAGAGGCAGAATGTGCAAGCTGAGGACCGGTTCGGTCCCCCTTACGTGCTGTCGACCCTA
129 GGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTTACGTGCTATCGACCCTA
16078114 CAGTCACAAC
Statistics
Matches: 162, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 159 0.98
197 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
TCCTGCTGCCACAACCCTCGGTCTGGTTTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGG
AGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTTACGTGCTATCGACCCTATTGCTG
G
Found at i:16078339 original size:159 final size:158
Alignment explanation
Indices: 16077982--16078370 Score: 417
Period size: 158 Copynumber: 2.5 Consensus size: 158
16077972 AACTCCGTAT
* * * * *
16077982 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
* * ** *** **
16078047 TCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGACCGGTTCGGTCCCCCTTACGTGCTGTCGACCC
66 CCGACCGGAGAGGCAGAATACGCAAGCTGAGGACCGACCCGGTCCCCCTTACGTGCTACCGACCC
* *
16078112 TACAGTCACAACCCTCGGTCCGGTCCGA
131 TACAGTCACAACCCTCGATCCGCTCCGA
* * * *
16078140 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCA
* * * *
16078204 GCCGACCGGAGAGGCATAATACGCAAGTTGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGAT
65 GCCGACCGGAGAGGCAGAATACGCAAGCTGAGGACCGACCCGGTCCCCCT-TACGTGCTACCGAC
* * * *
16078269 CCTACTGGT-ACAACCCTTGATCCGACT-GGG
129 CCTAC-AGTCACAACCCTCGATCCG-CTCCGA
* * * *
16078299 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAATGAGCGTACGGGCGCTCA
16078363 GCCGACCG
65 GCCGACCG
16078371 AATAGGCTGA
Statistics
Matches: 190, Mismatches: 35, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 94 0.49
159 86 0.45
160 9 0.05
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATACGCAAGCTGAGGACCGACCCGGTCCCCCTTACGTGCTACCGACCC
TACAGTCACAACCCTCGATCCGCTCCGA
Found at i:16078398 original size:159 final size:158
Alignment explanation
Indices: 16077982--16078404 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 158
16077972 AACTCCGTAT
* *
16077982 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACTGAGCGTACGGGCGCTCA
** * * * * ** **
16078046 ATCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGACCGGTTCGGTCCCCCTTACGTGCTGTCGACC
65 GCCGACCGGAGAGGCTGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTACGTGCTACCGACC
* *
16078111 CTACAGTCACAACCCTCGGTCCGGTCCGA
130 CTACAGTCACAACCCTCGATCCGCTCCGA
* * * * * *
16078140 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACTGAGCGTACGGGCGCTCA
* * *
16078204 GCCGACCGGAGAGGCAT-AATACGCAAGTTGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGA
65 GCCGACCGGAGAGGC-TGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCT-TACGTGCTACCGA
* * * * *
16078268 TCCTACTGGT-ACAACCCTTGATCCGACT-GGG
128 CCCTAC-AGTCACAACCCTCGATCCG-CTCCGA
* *
16078299 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACTGAGCGTACGGGCGCTCA
* * * * *
16078363 GCCGACCGAATAGGCTGAATGCACAAGCCGGGGATCGGCCCG
65 GCCGACCGGAGAGGCTGAATGCGCAAGCTGAGGATCGGCCCG
16078405 ATCCTTCATG
Statistics
Matches: 213, Mismatches: 43, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 90 0.42
159 110 0.52
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACTGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCTGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTACGTGCTACCGACCC
TACAGTCACAACCCTCGATCCGCTCCGA
Found at i:16078847 original size:170 final size:171
Alignment explanation
Indices: 16078496--16078851 Score: 411
Period size: 171 Copynumber: 2.1 Consensus size: 171
16078486 TAGGCTGGGG
* *
16078496 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCGTTCAACCGATCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGATCGAAGAGG
* * * * *
16078561 CATAATGCGCAAGCCGGGGATCAGTCCGATCCCCTTCTACGTGCTGTCGATCCCGTTATCGGTCC
66 CAGAATGCGCAAGCCGAGGATCAGACCGATCCCCTTCTACGTGCTGTAGATCCCGTGATCGGTCC
*
16078626 TGCTAGCACAACCCTCGATCCGGCTGGGGCTTAGACATGGA
131 TGCTAGCACAACCCTCGATCCGGCTGGAGCTTAGACATGGA
* ** * *
16078667 ATGAACTCCGTATGCCTAAGCCAACCTATGAAATGAGCGTGC-AGGCGCTCAACCGATCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGA-GCGCTCAACCGATCGAAGAG
* * * * *
16078731 GTAGAATGCGTAAGCCGAGGATC-GACCTGATCCCC-TCTGCGTGCTGTAGATCCTGCTGCT-GG
65 GCAGAATGCGCAAGCCGAGGATCAGACC-GATCCCCTTCTACGTGCTGTAGATCCCG-TGATCGG
* * * *
16078793 TCCTGCT-GTCACAACCCTTGGTTCGGTCT-GATCTTAGAC-TAGGA
128 TCCTGCTAG-CACAACCCTCGATCCGG-CTGGAGCTTAGACAT-GGA
16078837 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
16078852 TTAGACATGG
Statistics
Matches: 157, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
169 2 0.01
170 70 0.45
171 85 0.54
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAACCGATCGAAGAGG
CAGAATGCGCAAGCCGAGGATCAGACCGATCCCCTTCTACGTGCTGTAGATCCCGTGATCGGTCC
TGCTAGCACAACCCTCGATCCGGCTGGAGCTTAGACATGGA
Done.