Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 105 of 138
Found at i:16078863 original size:26 final size:26
Alignment explanation
Indices: 16078825--16078877 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078815 TCGGTCTGAT
16078825 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16078851 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16078877 C
1 C
16078878 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16080134 original size:26 final size:26
Alignment explanation
Indices: 16080096--16080151 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16080086 TCGATCTGAT
*
16080096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16080122 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
16080148 CTTA
1 CTTA
16080152 AGCCAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16080259 original size:392 final size:391
Alignment explanation
Indices: 16079533--16080369 Score: 1079
Period size: 392 Copynumber: 2.1 Consensus size: 391
16079523 TTCGGCTGGG
* *
16079533 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCATGAAATGAGCGTACGGGCGCTCAG
** * ** ** * * *
16079598 TTGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCGATCTGATCCCTCATGTGTACTGTCGATCC
65 CCGACCGAAGAGGTAGAATACGCAAACCGGGGATCGACCTGATCCCCCATGCGTACTGTCGATCC
* * * * * * **
16079663 TGCTACTGGGCCTGCTACCGTAACCTTTGGTTCGGTCCGATCTTAGACTGGGGATGAACTTTGTA
130 TGCTACTAGGCCTACTACCGTAACCCTTGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
16079728 TGCTTAGACATGGAATAAACTCCTTATGCCCAAGCCAACCCATGAAACGAAAGTGTGGGTGCTCA
195 TGCTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCAACGAAACGAAAGTGTAGGCGCTCA
*** * * * * *
16079793 ACCGGTCGAAGAGGTAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTATTGATC
260 ACCAACCGAAGAGGTAGAATACGTAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATC
* *
16079858 CTGCTACTGGTCCTGCTGTCGCAACCCTTGATCC-GATCTGATCTTAGACTGGGAATGAACTCTG
325 CTCCTACTGGTCCTGCTGTCGCAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATGAACTCTG
16079922 TAT
389 TAT
* * *
16079925 GCTTAGACATAGAATGAACTCCGTATGCCCAAGCCTACCCATGAAACGAGCGTACGGGCGCTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * *
16079989 ACCGATCGAAGAGGTAGAATACGTAAACCGGGGATTGACCTGGTCCCCCCTGCGTGCTGTCGATC
65 -CCGACCGAAGAGGTAGAATACGCAAACCGGGGATCGACCTGATCCCCCATGCGTACTGTCGATC
* * * * *
16080054 CTGTTGCTAGTCCTACTGCCGTAACCCTTGATTCGATCTGATCTTAGACTGGGAATGAACTCCGT
129 CTGCTACTAGGCCTACTACCGTAACCCTTGATTCGATCCGATCTTAGACTGGGAATGAACTCCGT
**
16080119 ATGCTTAGACATGGAATAAACTCCGTATGCTTAAGCCAACCAACGAAAC--AAGCATGTAGGCGC
194 ATGCTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCAACGAAACGAAAG--TGTAGGCGC
* *
16080182 TCAGCCAACCGAAGAGGTAGAATACGTAAGTCGAGGATCGGCCCGATCCCCCCTGCATGCTATCG
257 TCAACCAACCGAAGAGGTAGAATACGTAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCG
* *
16080247 ATCCTCCTACTGGTCCTGCTGTCGCATCCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTC
322 ATCCTCCTACTGGTCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTC
16080312 TGTAT
387 TGTAT
*
16080317 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAATGAGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA-CCCATGAAATGAGCGT
16080370 TCGGATGCTG
Statistics
Matches: 380, Mismatches: 60, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
390 3 0.01
391 2 0.01
392 374 0.98
393 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (391 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCATGAAATGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGTAGAATACGCAAACCGGGGATCGACCTGATCCCCCATGCGTACTGTCGATCCT
GCTACTAGGCCTACTACCGTAACCCTTGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCAACGAAACGAAAGTGTAGGCGCTCAA
CCAACCGAAGAGGTAGAATACGTAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATCC
TCCTACTGGTCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:16080330 original size:26 final size:26
Alignment explanation
Indices: 16080291--16080342 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16080281 TCCAGTTTGA
*
16080291 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
16080317 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
16080343 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:16080388 original size:196 final size:196
Alignment explanation
Indices: 16079533--16080373 Score: 889
Period size: 196 Copynumber: 4.3 Consensus size: 196
16079523 TTCGGCTGGG
* * * *
16079533 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAG
** * ** * * * * * * ** * *
16079598 TTGACCGGAGAGGTAGAATGTGCAAGTCGGGGATCGATCTGATCCCTCATGTGTACTGTCGATCC
66 CCGACCGAAGAGGTAGAATACGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATCC
* * * * * * * * * *
16079663 TGCTACTGGGCCTGCTACCGTAACCTTTGGTTCGGTCCGATCTTAGACTGGGGATGAACTTTGTA
131 TGCTACTGGTCCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTA
16079728 T
196 T
* * * ** *
16079729 GCTTAGACATGGAATAAACTCCTTATGCCCAAGCCAACCCATGAAACGAAAGTGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGCGCTCA
* ** * * * * *
16079793 ACCGGTCGAAGAGGTAGAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTATTGATC
65 GCCGACCGAAGAGGTAGAATACGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATC
*
16079858 CTGCTACTGGTCCTGCTGTCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCTGT
130 CTGCTACTGGTCCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCTGT
16079923 AT
195 AT
* * * *
16079925 GCTTAGACATAGAATGAACTCCGTATGCCCAAGCCTACCCATGAAACGAGCGTACGGGCGCTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAG
* * * * * * *
16079989 ACCGATCGAAGAGGTAGAATACGTAAACCGGGGATTGACCTGGTCCCCCCTGCGTGCTGTCGATC
66 -CCGACCGAAGAGGTAGAATACGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATC
* * * * * * *
16080054 CTGTTGCTAGTCCTACTGCCGTAACCCTTGATTCGATCTGATCTTAGACTGGGAATGAACTCCGT
130 CTGCTACTGGTCCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCTGT
16080119 AT
195 AT
* * * * * * *
16080121 GCTTAGACATGGAATAAACTCCGTATGCTTAAGCCAACCAACGAAACAAGCATGT-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGCGCTCA
* * * *
16080185 GCCAACCGAAGAGGTAGAATACGTAAGTCGAGGATCGGCCCGATCCCCCCTGCATGCTATCGATC
65 GCCGACCGAAGAGGTAGAATACGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATC
* * * * *
16080250 CTCCTACTGGTCCTGCTGTCGCATCCCTCGATCC-AGTTTGATCTTAGACTGGGAATGAACTCTG
130 CTGCTACTGGTCCTGCTGCCGCAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCTG
16080314 TAT
194 TAT
* * *
16080317 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAATGAGCGTTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGG
16080374 ATGCTGAGCC
Statistics
Matches: 527, Mismatches: 111, Indels: 14
0.81 0.17 0.02
Matches are distributed among these distances:
195 2 0.00
196 524 0.99
197 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAG
CCGACCGAAGAGGTAGAATACGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATCC
TGCTACTGGTCCTGCTGCCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:16081398 original size:26 final size:26
Alignment explanation
Indices: 16081360--16081412 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16081350 GGCTCAAACT
16081360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16081386 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16081412 C
1 C
16081413 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16081678 original size:157 final size:157
Alignment explanation
Indices: 16081386--16081886 Score: 472
Period size: 157 Copynumber: 3.2 Consensus size: 157
16081376 ACTCCGTATG
** * * * * *
16081386 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGTG-GATGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCATGCGAG-CGCTCAG
** ** * * * * *
16081450 TTGGTCGAAAAGGCAGAATGCGCAAGCCAGGGATCGG-TCTGATCCCCCCCTGTGTGCTGTTGAT
64 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCTC-GGT-CCCCCCTGCGTGCTGTCGAT
*
16081514 CCTGCTGCCACAACCCTCAGTCCGGTCTGAT
127 CCTGCTGCCACAACCCTCAGTCTGGTCTGAT
** *
16081545 CTTAGACTGGGAATGAACTCCGTATGCAAAATTCAACCCACAAAACGAGCATGC-AG-GCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAGC
* * * *
16081608 CTACCGAAGAGGCATAATGCCCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * **
16081673 CGCTGCCACAACCATCGGTCTGG-CTGGGG
129 TGCTGCCACAACCCTCAGTCTGGTCT-GAT
* ** * *
16081702 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAGC
* * * * * * * **
16081767 CGGCCAAAGAGGTAGAATACACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCT
65 CGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
16081832 ACTGTCGCAACCCTCAGTCTGGTCTGAT
130 GCTGCCACAACCCTCAGTCTGGTCTGAT
16081860 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
16081887 TTAGACTAGG
Statistics
Matches: 275, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 7 0.03
157 116 0.42
158 62 0.23
159 90 0.33
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCAAAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAGCC
GACCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCTGGTCTGAT
Found at i:16081896 original size:26 final size:26
Alignment explanation
Indices: 16081860--16081912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16081850 CTGGTCTGAT
16081860 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16081886 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16081912 C
1 C
16081913 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16082188 original size:171 final size:171
Alignment explanation
Indices: 16082011--16082332 Score: 428
Period size: 171 Copynumber: 1.9 Consensus size: 171
16082001 GCGTGCTGTT
**
16082011 GATCCCGCTATCGGTCCTGCTGCCACAACCCTCGGTCTGGCCGGGACTTAGACATGGAATGAACT
1 GATCCCGCTATCGGTCCTGCTGCCACAACCCTCGGTCCAGCCGGGACTTAGACATGGAATGAACT
* * ** * * * **
16082076 CTGTATGCCTAAACCAATCCATGAAACAAGCGTGCGGGTGCTCAATCGATCGGGGAGATAGAATG
66 CCGTATGCCTAAACCAACCCACAAAACAAGCATGCAGGCGCTCAATCGATCGAAGAGATAGAATG
*
16082141 CGCAAGCCGAGGATCGGCCCGGCCCCTTTCTACATGCTGCC
131 CGCAAGCCGAGGATCAGCCCGGCCCCTTTCTACATGCTGCC
* ** ** *
16082182 GATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGTTGGGGTTTAGACATGGGATGAACT
1 GATCCCGCTATCGGTCCTGCTGCCACAACCCTCGGTCCAGCCGGGACTTAGACATGGAATGAACT
* * * *
16082247 CCGTATGCCTAAGCCAACCCACAAAACAAGCATGCAGGCGCTCAGTCGGTCGAAGAGGTAGAATG
66 CCGTATGCCTAAACCAACCCACAAAACAAGCATGCAGGCGCTCAATCGATCGAAGAGATAGAATG
* *
16082312 CGTAAGTCGAGGATCAGCCCG
131 CGCAAGCCGAGGATCAGCCCG
16082333 ATCCCCCCTG
Statistics
Matches: 127, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
171 127 1.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (171 bp):
GATCCCGCTATCGGTCCTGCTGCCACAACCCTCGGTCCAGCCGGGACTTAGACATGGAATGAACT
CCGTATGCCTAAACCAACCCACAAAACAAGCATGCAGGCGCTCAATCGATCGAAGAGATAGAATG
CGCAAGCCGAGGATCAGCCCGGCCCCTTTCTACATGCTGCC
Found at i:16082927 original size:26 final size:26
Alignment explanation
Indices: 16082898--16082950 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16082888 CCGGTCTGAT
*
16082898 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16082924 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16082950 C
1 C
16082951 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16084557 original size:26 final size:26
Alignment explanation
Indices: 16084528--16084580 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16084518 GTTGGCTTAG
16084528 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16084554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16084580 G
1 G
16084581 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16085484 original size:26 final size:26
Alignment explanation
Indices: 16085454--16085506 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16085444 GTTGACTTAG
*
16085454 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16085480 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16085506 G
1 G
16085507 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16085725 original size:185 final size:183
Alignment explanation
Indices: 16085404--16086033 Score: 624
Period size: 185 Copynumber: 3.4 Consensus size: 183
16085394 CTTCAGTCGA
* * * *
16085404 CCTCTTCGGCCGGCTGAGCGCCAGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
16085469 CCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATTAGATCGGACCAAGGGTTGCGGCAG
66 CCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGA-C-GACCAGGGGTTGCGACAG
* *
16085534 CAGGATCGGTAGCATGCAGAGGTGGACCGGGCTTATCCCCAACTTGTGCAT-TATG
129 CAGGATCGGTAGCACGCAGAGGTGGACCGGG-TTATCCCCAGCTTGTGCATATATG
* * * *
16085589 CCTCTCCGACCGGCTGAGTGCCTGTAAGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
16085654 CCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCAGGGGTTACGACAG
66 CCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGA-C-GACCAGGGGTTGCGACAG
* * * * * *
16085719 CAGGATCGGTAGCACGTAGAGGTGGATCAGGTTTATCCTCAGCTTACAGAATATGCCTCTCTGAT
129 CAGGATCGGTAGCACGCAGAGGTGGA-CCGGGTTATCCCCAGCTT---G----TG-C-ATAT-AT
16085784 CG
183 -G
** * * *
16085786 ACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTA
1 -CCTCTCCGACCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
16085851 TCCCCAGTCTAACCATACGGAGTTCATTCCCATTCTAAGATCAGACGTA-CTGAGGGTTGCGACA
65 TCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACG-ACCAG-GGGTTGCGACA
* * * * ** *
16085915 GTAGGATCGATAGCACGCAG-GGGGGACCGGGTCGATCCCTGGC-T-TGCATATCTG
128 GCAGGATCGGTAGCACGCAGAGGTGGACCGGGT-TATCCCCAGCTTGTGCATATATG
* * * * * *
16085969 CCTCTCC-AGCCGGTTGAGCACCTGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGA-CCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
16086033 T
65 T
16086034 TTCGTGTCTA
Statistics
Matches: 365, Mismatches: 62, Indels: 39
0.78 0.13 0.08
Matches are distributed among these distances:
182 53 0.15
183 1 0.00
184 1 0.00
185 152 0.42
186 4 0.01
187 2 0.01
188 1 0.00
192 2 0.01
193 1 0.00
194 1 0.00
195 6 0.02
196 16 0.04
197 30 0.08
198 95 0.26
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (183 bp):
CCTCTCCGACCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACGACCAGGGGTTGCGACAGCA
GGATCGGTAGCACGCAGAGGTGGACCGGGTTATCCCCAGCTTGTGCATATATG
Found at i:16085867 original size:26 final size:26
Alignment explanation
Indices: 16085838--16085888 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16085828 TTGACTTAGG
*
16085838 CATACGGAGTTTATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
16085864 CATACGGAGTTCATTCCCATTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
16085889 GATCAGACGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:16086734 original size:26 final size:26
Alignment explanation
Indices: 16086704--16086756 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16086694 GTTGGCTTAG
*
16086704 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16086730 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16086756 G
1 G
16086757 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16086947 original size:26 final size:26
Alignment explanation
Indices: 16086911--16086963 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16086901 GTTGACTTAG
16086911 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16086937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16086963 G
1 G
16086964 ATCAAATCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16087291 original size:25 final size:26
Alignment explanation
Indices: 16087238--16087292 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16087228 TGGGTTAACT
16087238 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
16087264 TAAGCATATGGAGTT-ATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16087289 TAAG
1 TAAG
16087293 ATTGGACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16087455 original size:26 final size:26
Alignment explanation
Indices: 16087425--16087476 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16087415 GTTGGCTTTG
16087425 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
16087451 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16087477 AATCAGACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16087658 original size:26 final size:26
Alignment explanation
Indices: 16087622--16087674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16087612 GTTGACTTAG
*
16087622 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16087648 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16087674 G
1 G
16087675 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16088722 original size:26 final size:26
Alignment explanation
Indices: 16088685--16088737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16088675 GTTGACTTAG
* *
16088685 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
16088711 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
16088737 G
1 G
16088738 GCCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:16089281 original size:343 final size:343
Alignment explanation
Indices: 16088633--16089396 Score: 941
Period size: 343 Copynumber: 2.2 Consensus size: 343
16088623 TTGCGAATCT
* * **
16088633 TGCCTC-TCTGGTCGACTGAGTGTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 TGCCTCTTC-GGTCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
**
16088697 CATCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGGCCAGATTGGACCGAGGGTTACAG
65 CATCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGGCCAGACCGGACCGAGGGTTACAG
* * * * * *
16088762 CAGTAGGATCCACAGCATGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
130 CAGCAAGATCCACAGCACGCAGGAGGGACTGGGCCGATCCCCGGATTGCGCATTATGCCTCTCCG
* * *
16088827 GTCGGCTGAGCACCCGCACGCCGGTTTCGTGGGTTAGCCTAGGCATAGGGAGTTCATTCCATCTC
195 GCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATCTC
* * * * *
16088892 TAAGCCCCAGCTGGACAAAGGGTTGTGGCAGCGAGACAGGCAGCACGTAGAGGGGGATCGGG-CC
260 TAAGCCCCAGCTGGACAAAGGGCTATGACAGCGAGACAGACAGCACGTAGAGAGGGATCGGGTCC
*
16088956 GATTCCCAGCTTGCGCATTA
325 -ATCCCCAGCTTGCGCATTA
* *
16088976 TGCCTCTTCGGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTT
1 TGCCTCTTCGGTCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * ** *
16089041 ATCCCCAGTCTAAGCTTATGAAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGC-G
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGGCCAG-ACCGGACCGAGGGTTACAG
*** *
16089104 ACAGCAAGATCGGTAGCACGCAGGAGGGA-TCGGGCCGATCCCCGGATTGTGCATTATGCCTCTC
130 -CAGCAAGATCCACAGCACGCAGGAGGGACT-GGGCCGATCCCCGGATTGCGCATTATGCCTCTC
* * * * * *
16089168 TGGCCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
193 CGGCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATC
* ** *
16089233 TCTAAGCCCCATCTGGACCGAGGGCTATGACAGCGGGACAGACAGCACGTAGAGAGGGATCGGGT
258 TCTAAGCCCCAGCTGGACAAAGGGCTATGACAGCGAGACAGACAGCACGTAGAGAGGGATCGGGT
* *
16089298 CCATCCCCGGCTTGTGCATTA
323 CCATCCCCAGCTTGCGCATTA
* * * * **
16089319 TGCCT-TTCCGGT-GGCTCAGCACCCGA-ACGCTCGTTTCGTGGGATGACTTAGGCATACAAAGT
1 TGCCTCTT-CGGTCGACTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
16089381 TCATTCCCAGTCTAAG
64 TCATCCCCAGTCTAAG
16089397 ATCAGATCAG
Statistics
Matches: 360, Mismatches: 54, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
342 60 0.17
343 296 0.82
344 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
TGCCTCTTCGGTCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGGCCAGACCGGACCGAGGGTTACAGC
AGCAAGATCCACAGCACGCAGGAGGGACTGGGCCGATCCCCGGATTGCGCATTATGCCTCTCCGG
CCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATCTCT
AAGCCCCAGCTGGACAAAGGGCTATGACAGCGAGACAGACAGCACGTAGAGAGGGATCGGGTCCA
TCCCCAGCTTGCGCATTA
Found at i:16089590 original size:26 final size:26
Alignment explanation
Indices: 16089538--16089590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16089528 GTTGACTTAG
*
16089538 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTATAA
* *
16089564 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCACTATAA
16089590 G
1 G
16089591 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTATAA
Found at i:16090895 original size:159 final size:159
Alignment explanation
Indices: 16090614--16090984 Score: 374
Period size: 159 Copynumber: 2.3 Consensus size: 159
16090604 AGCGCCTACG
* * * * * *
16090614 CGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAGCCGGACCG
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCA
* * * * ** *
16090679 AGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATCGGGCCAATCCTCGGCTTGTGCATT
66 AGGGTTGCGGCAGCAGGACTGACAACACGCAGAGGGGGATCGGGCCAATCCTCGGCTTACGCAAT
* * *
16090744 ATGCCTCTCTGGTCGGCTCAACGCCCGTA
131 ATGCCTCTCCGATCGGCTCAACGCCCGCA
* * *
16090773 CGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGAAC
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-CCGAAC
* * **
16090836 CAAGGGTTGCGGCAGTAGGA-TCGACAACACGGA-AGGAGGGATCGGGCCGGTCC-CTGGCTTAC
64 CAAGGGTTGCGGCAGCAGGACT-GACAACACGCAGAGG-GGGATCGGGCCAATCCTC-GGCTTAC
* * * * *
16090898 GCAATCTGCGTCTCCGATCGGCTGAGCGCTCGCA
126 GCAATATGCCTCTCCGATCGGCTCAACGCCCGCA
* * * *
16090932 CGCTCATTTCATGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTCTAAGCA
1 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16090985 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
158 9 0.05
159 160 0.94
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCA
AGGGTTGCGGCAGCAGGACTGACAACACGCAGAGGGGGATCGGGCCAATCCTCGGCTTACGCAAT
ATGCCTCTCCGATCGGCTCAACGCCCGCA
Found at i:16091119 original size:185 final size:185
Alignment explanation
Indices: 16090797--16091169 Score: 487
Period size: 185 Copynumber: 2.0 Consensus size: 185
16090787 GTTGACTTAG
* * * *
16090797 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCAACA
* * ** * *
16090862 ACACGGAAGGAGGGATCGGGCCGGTCCCTGGCTTACGCAATCTGCGTCTCCGATCGGCTGAGCGC
66 ACACGGAAGGAGGGACCGGGCCGATCCCAAGCTTACGCAATCTGCCTCTCCGACCGGCTGAGCGC
* * *
16090927 TCGCACGCTCATTTCATGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTACATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
*** *
16090982 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGATTGAGGGTTGCAGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCAGCAGCAGGATCAAC
* * * * * * * *
16091046 AGCACGTAGGGGGGGACCGGGCCGATCCCAAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGTG
65 AACACGGAAGGAGGGACCGGGCCGATCCCAAGCTTACGCAATCTGCCTCTCCGACCGGCTGAGCG
* *
16091111 CCCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCATTACATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
16091167 GCA
1 GCA
16091170 ACATCCGGAC
Statistics
Matches: 160, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 1 0.01
185 159 0.99
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCAGCAGCAGGATCAACA
ACACGGAAGGAGGGACCGGGCCGATCCCAAGCTTACGCAATCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCATTACATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:16091644 original size:343 final size:343
Alignment explanation
Indices: 16090886--16091715 Score: 952
Period size: 343 Copynumber: 2.4 Consensus size: 343
16090876 ATCGGGCCGG
* * * * * * *
16090886 TCCCTGGCTTACGCAATCTGCGTCTCCGATCGGCTGAGCGCTCGCACGCTCATTTCATGGGTTGG
1 TCCCTGGCTT-TGCATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGG
* *
16090951 CTTAGGCGTACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
65 CTTAGGCATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ** **
16091016 CAGATTGAGGGTTGCAGTAGCAGGATCAACAGCACGTAGGGGGGGACCGGGCCGATCCCAAGCTT
130 CGGACTGAGGGTTACAGTACCAAGATCAACAGCACACAGGGGGGGACCAAGCCGATCCCAAGCTT
* ** * * * * *
16091081 GCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTACGTGGGTTGGCTTAGGCATA
195 GCGCATTCTGCCTCTCCAACCGACTGAGCGCCCACACGCCCATTACGTGGGTTGGCTTAAGCATA
* *
16091146 CAGAGTTCATTCCATGTCTAAGCAACATCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
260 CAGAGTTCATTCCATGTCTAAGCAACATCCAGACCGAGCGTTGTGGCAGCAGGATCGACAGCACG
* *
16091211 TAGAGGGGGACCGGGCTAA
325 CAGAGGGGGACCGGACTAA
* * * * * * * * ** * * *
16091230 TCCTTGGGTTTCACATTATGCCTCGCCGATAGACTGAGTGCCCGCATACTTGTTTCGTCGATTGA
1 TCCCTGGCTTT-GCATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGG
* * * *
16091295 CTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCGGA
65 CTTAGGCATATAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
16091359 CCGGACTGAGGGTTACAGTACCAAGATCGATAGCACACAGGGGGGG-CCAAGTCGATCCCCGGCT
129 CCGGACTGAGGGTTACAGTACCAAGATCAACAGCACACAGGGGGGGACCAAGCCGATCCCAAGCT
* *
16091423 TGTGCATTCTGCCTCTCCAACCGACTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAAGCAT
194 TGCGCATTCTGCCTCTCCAACCGACTGAGCGCCCACACGCCCATTACGTGGGTTGGCTTAAGCAT
** ** *
16091488 AGGGAGTTCATTCCATGTCTAAGCCCCAGT-CAGACCGAGCGTTGTGGCAGCGGGATCGGA-AGC
259 ACAGAGTTCATTCCATGTCTAAGCAACA-TCCAGACCGAGCGTTGTGGCAGCAGGATC-GACAGC
*
16091551 ACGCAGAGGGGGACCGGACTGA
322 ACGCAGAGGGGGACCGGACTAA
* *
16091573 TCCCTGGCTTGTGCATTCTGCCTCTCCGACT-GGCTGAGCACCCGCACACTCATTTTGTGGGTTG
1 TCCCTGGCTT-TGCATTCTGCCTCTCCGA-TAGGCTGAGCGCCCGCACACTCATTTCGTGGGTTG
* * *
16091637 GCTTAGGCATATAGAGTTCATTCCATGTCT-AGCCGTACGGAGTTCATTCCCAATCTAAGGTCAG
64 GCTTAGGCATATAGAGTTCATTCCATGTCTAAG-CATACGGAGTTCATTCCCAGTCTAAGATCAG
*
16091701 ACCGGACCGAGGGTT
128 ACCGGACTGAGGGTT
16091716 GTCACAACCA
Statistics
Matches: 395, Mismatches: 83, Indels: 17
0.80 0.17 0.03
Matches are distributed among these distances:
342 5 0.01
343 247 0.63
344 140 0.35
345 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (343 bp):
TCCCTGGCTTTGCATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGC
TTAGGCATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACTGAGGGTTACAGTACCAAGATCAACAGCACACAGGGGGGGACCAAGCCGATCCCAAGCTTG
CGCATTCTGCCTCTCCAACCGACTGAGCGCCCACACGCCCATTACGTGGGTTGGCTTAAGCATAC
AGAGTTCATTCCATGTCTAAGCAACATCCAGACCGAGCGTTGTGGCAGCAGGATCGACAGCACGC
AGAGGGGGACCGGACTAA
Found at i:16092192 original size:26 final size:26
Alignment explanation
Indices: 16092162--16092214 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16092152 GTTGGCTTAG
*
16092162 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
16092188 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
16092214 G
1 G
16092215 AGTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:16093416 original size:26 final size:26
Alignment explanation
Indices: 16093366--16093418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093356 GTTGGCTTAG
*
16093366 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATATCTAA
16093392 GCATACGGAGTTCATTCCAA-ATCTAA
1 GCATACGGAGTTCATT-CAATATCTAA
16093418 G
1 G
16093419 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAATATCTAA
Found at i:16094031 original size:380 final size:379
Alignment explanation
Indices: 16093338--16094210 Score: 1029
Period size: 380 Copynumber: 2.3 Consensus size: 379
16093328 GCCGAGTGCA
* * * *
16093338 CGCACGCTCTTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * ** * * *
16093403 TCATTCCAAATCTAAGATC-GAATCGGACCGAGGGTTGTAATAGCAGGACTAGCAGTAGGATCGA
65 TCATTCCCAATCTAAGATCAG-ATCGAACCGAGGGTTACAACAGCAGGACCAGCAGCAGGATCGA
** * * * **
16093467 TAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGTG
129 TAACACGCAGGGGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCA
* * * *
16093532 CCCGCACACTCGTTTCATGGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
194 CCCGCACACTCGTTTCATGGGTTCGCTTAAGCAGACAGAGTTCATCCCATGTCTAAGCCCCAGTA
*
16093597 GAATCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGACAGCACAAAGAGGGGGA-TCGAGCT
259 GAACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGACAGCACAAAGAGGGGGACT-GAGCT
* * * * * *
16093661 AATCCTTGGCTAATGCATTTTGCCTTTCTGACCGACCTCT-CTGACTGGCTGAACGCC
323 AATCCTCGACTAACGCATTTTGCCTCTCCGACCGACCTCTCCAG-CTGGCTGAACGCC
* * *
16093718 CGCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAATCATACAGAGT
1 CGCACGCTCGTTTCGTG-GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * *
16093783 TCATTCCCAGTATAAGATCAGATCGAACCTGA-GGTTACAGCAGCAGGACCAGCAGCAGGATCGA
65 TCATTCCCAATCTAAGATCAGATCGAACC-GAGGGTTACAACAGCAGGACCAGCAGCAGGATCGA
* * *
16093847 TAACACGTAGGGGGGATCGGGCCGATCCCAAGCTTACGCATTCTGCCTTTTCGGCCAGCTGAGCA
129 TAACACGCAGGGGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCA
* * *
16093912 CCTGCACACTCGTTTCATGGGTTGGCTTAAGCAGACGGAGTTCATCCCATGTCTAAGCCCCAGTA
194 CCCGCACACTCGTTTCATGGGTTCGCTTAAGCAGACAGAGTTCATCCCATGTCTAAGCCCCAGTA
* * ** * ** * * *
16093977 GAACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGATAGCACGCAGAGGGGGACTGGGTTG
259 GAACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGACAGCACAAAGAGGGGGACTGAGCTA
* * *
16094042 ATCCTCGACTTACGCATTTTGCCTCTCCGACTGACCTCTCCAGCTGGCTGAACGGC
324 ATCCTCGACTAACGCATTTTGCCTCTCCGACCGACCTCTCCAGCTGGCTGAACGCC
* * * * * * * *
16094098 CACACACTCGTTTCGTTGGTTGACTTCGGCATATGAACTTCATCCCCA-GTTTAAGCATACGGAG
1 CGCACGCTCGTTTCG-TGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAG
* * * *
16094162 TTCATTCCCAATCTAAGATCAGA-CTGGACCGATGGTTGCGACAGCAGGA
64 TTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTACAACAGCAGGA
16094211 TCGACAGCAC
Statistics
Matches: 413, Mismatches: 71, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
379 4 0.01
380 398 0.96
381 11 0.03
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (379 bp):
CGCACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAATCTAAGATCAGATCGAACCGAGGGTTACAACAGCAGGACCAGCAGCAGGATCGATA
ACACGCAGGGGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCACC
CGCACACTCGTTTCATGGGTTCGCTTAAGCAGACAGAGTTCATCCCATGTCTAAGCCCCAGTAGA
ACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGACAGCACAAAGAGGGGGACTGAGCTAAT
CCTCGACTAACGCATTTTGCCTCTCCGACCGACCTCTCCAGCTGGCTGAACGCC
Found at i:16094830 original size:26 final size:26
Alignment explanation
Indices: 16094796--16094851 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16094786 TGGGTTGACT
*
16094796 TAAGGATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
16094822 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16094848 TAAG
1 TAAG
16094852 ATCTAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16095343 original size:551 final size:552
Alignment explanation
Indices: 16094577--16095747 Score: 1515
Period size: 551 Copynumber: 2.1 Consensus size: 552
16094567 GCTCGTTTTG
*
16094577 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCCAA
1 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
* * * * * *
16094642 GATCAAATAGGATCAAGGGTTGCGGCAGTAGGACCAGTAGCAGGACTGAAAGCACGCAGGGTGGA
66 GATCAAATAGGACCAAGGGTTACGACAGCAGGACCAGCAGCAGGACTGAAAGCACGCAGGGGGGA
* * * * *
16094707 CTGGGTCGACTCTCGGCTTGTGCATTCTGCGTCTCCGGTAGGCCTCTCCGGTGGGCTGAGCACCC
131 CTGGGTCGACCCTCGGCTTGCGCATTCTGCCTCTCCGGTAGGCCTCTCCAGTCGGCTGAGCACCC
* *
16094772 GCACGCTCGTTTCATGGGTTGACTTAAGG-ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
196 GCACGCTCGTGTCATGGGTTGACTT-AGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGT
* * * *
16094836 TCATTCCTAGTCTAAGATCTAACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGA-AGGA
260 TAATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCAC-ACAGGA
* * * *
16094900 GGGA-TCGAGCTAATCCCTGGGTTACGCATTTTGCCTCT-TCGATCGGCTAAGGGCCCGCACGCC
324 GGGACT-GAGCTAATCCCCGGCTTACGCATTCTGCCTCTCTCG-TCGGCTAAGCGCCCGCACGCC
* * * * *
16094963 CGTT-TAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCT-GTCGGATCGAG
387 CGTTCCA-TGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC-CTAGCCAGACCGAG
* * * * *
16095026 GGTTGTGGTAGTGGGACC-GACAGCACGCAGAGGGGGATCGGGTC-ATCCCCGACTTATGCATTC
450 GGTTGTGGCAGCGGGACCAG-CAGCACGCAGAGGGGGATCGGGCCGATCCCCGACCTATGAATTC
*
16095089 T-CACTCTCCGATCGACTGAA-TACCCGCACGCCCGTTTCA
514 TGC-CTCTCCGATCG-CTGAAGCACCCGCACGCCCGTTTCA
* * *
16095128 TGTGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATCCAGAGTTCCTTCCCAGTCAAA
1 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
** * * * * *
16095193 GATCGGATCA-GACCGAGGGTTACGATAGCAGGATCAGCAGCAGGA-TCGACAGCACGTAGGGGG
66 GATCAAAT-AGGACCAAGGGTTACGACAGCAGGACCAGCAGCAGGACT-GAAAGCACGCAGGGGG
*
16095256 GACTGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGCT-GGCCTCTCCAGTCGGCTGAGC
129 GACTGGGTCGA-CCCTCGGCTTGCGCATTCTGCCTCTCCGG-TAGGCCTCTCCAGTCGGCTGAGC
* *
16095319 GCCCGCACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGG
192 ACCCGCACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGG
** * * *
16095384 AGTTAATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGGTAGTAGGATCGGCAGCACACAG
257 AGTTAATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACACAG
* * * * *
16095449 GGGGGACTGGGCTAATCCCCGGCTTACGCATTCTGCCTCTCTTGTCGGTTGAGCGCCCGCACGCC
322 GAGGGACTGAGCTAATCCCCGGCTTACGCATTCTGCCTCTCTCGTCGGCTAAGCGCCCGCACGCC
16095514 CGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGG
387 CGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGG
* * * *
16095579 TTGTGGCAGCGGGACCAGCAGCACGTAGAGGGGGCTCGGGCCGATCCTCGACCTGTGAATTCTGC
452 TTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACCTATGAATTCTGC
* * *
16095644 CTCTCCGATCGGTTAAGCACCCGCACGCTCGTTTCA
517 CTCTCCGATCGCTGAAGCACCCGCACGCCCGTTTCA
* * * * *
16095680 TGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
16095745 GAT
66 GAT
16095748 TTTGAGCCAC
Statistics
Matches: 535, Mismatches: 71, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
550 7 0.01
551 413 0.77
552 114 0.21
553 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (552 bp):
TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAA
GATCAAATAGGACCAAGGGTTACGACAGCAGGACCAGCAGCAGGACTGAAAGCACGCAGGGGGGA
CTGGGTCGACCCTCGGCTTGCGCATTCTGCCTCTCCGGTAGGCCTCTCCAGTCGGCTGAGCACCC
GCACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTT
AATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACACAGGAGG
GACTGAGCTAATCCCCGGCTTACGCATTCTGCCTCTCTCGTCGGCTAAGCGCCCGCACGCCCGTT
CCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGT
GGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCCGACCTATGAATTCTGCCTCT
CCGATCGCTGAAGCACCCGCACGCCCGTTTCA
Found at i:16095386 original size:26 final size:26
Alignment explanation
Indices: 16095350--16095402 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16095340 GTTGACTTAG
*
16095350 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
* *
16095376 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
16095402 G
1 G
16095403 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAATCTAA
Found at i:16096443 original size:26 final size:26
Alignment explanation
Indices: 16096407--16096483 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
16096397 TGACTTAGGG
*
16096407 ATACGGAGTTCATCCCCAATCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
16096433 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16096459 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16096484 ATCAGACTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16096746 original size:158 final size:159
Alignment explanation
Indices: 16096457--16096960 Score: 540
Period size: 158 Copynumber: 3.2 Consensus size: 159
16096447 CCCAGTCTAA
* * * *
16096457 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-AGACTGGATCGAGGGTTGCGGTAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCGA-ACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
16096519 ACAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAG
64 ACAGCACACAGAAGGGGATCGGGT-AATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAG
* * *
16096583 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 TGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * *
16096615 GCATAGGGAGTTCATTCCATGTCTAAGCCTC-AGCCGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCATCGAACCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * *
16096678 CAGCACACAGAAGGGGATCGGGTTATCCCCGGCTTGCGCATTATGCCTCTCCGACTGACTCAATG
65 CAGCACACAGAAGGGGATCGGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGTG
* * * *
16096743 CCCGCACACTCATTTCGTGGGTTGACTTTG
130 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
16096773 GCATACGGAGTTCATTCCCA-GCCTAAG-ATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * ** * * *
16096836 CAGCTCGCAGGAGGGG-CCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGT
65 CAGCACACAGAAGGGGATC-GGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGT
*
16096900 GCCCGCACGCTCTTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
16096931 GCATACGGAGTTCATTCAATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
16096961 ACAGAGTTCA
Statistics
Matches: 283, Mismatches: 53, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
157 9 0.03
158 254 0.90
159 20 0.07
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACACAGAAGGGGATCGGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGTGC
CCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:16097626 original size:380 final size:380
Alignment explanation
Indices: 16096881--16097745 Score: 1069
Period size: 380 Copynumber: 2.3 Consensus size: 380
16096871 GCGCATTCTG
* * * * * *
16096881 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCTGACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
* * * ** *
16096946 TCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAATCGGACCAAGGGTTGTAATA
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAATCGAACCAAGGGTTACAACA
* * * * * * *
16097010 GCAGGACCAGTAGTAGGATCGGCAAGACGCAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCT
131 GCAGGACCAGCAGTAGAATCGACAACACCCAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCT
* ** *
16097075 ACCTCTTCGGTCAGTTGAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
196 ACCTCTTCGGTCAGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
* **
16097140 TTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGGTAGCAAGATCGATAGC
261 TCCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGATAGC
* * * * * *
16097205 ACAAAGAGGGGGACCGGGCTAATCCTTGGCTTATGCATTTTGCCTTTTCGA-TCGA
326 ACAAAGAAGGGGACCGGGCTAATCCTCGACTTACGCATTTTGCCTCTCCGACT-GA
* * * *
16097260 CCTCTCTGACCGGTTGAATGCCCGTACGCTCGTTTCGTGAGTTAACTTAGGCATATGGAGTTCAT
1 CCTCTCTGACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
* ** *
16097325 TCCATGTCTAATCATACAGAGTTCATTCCCAGTCTAAGATCAG-ATCGAACCTGGGGTTACAGCA
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAATCGAACCAAGGGTTACAACA
* * *
16097389 GCAGGACCAGCAGTAGAATCGATAACACCCAGGGAGGATCGGGTCGATCCCCAGCTTACGCATTC
131 GCAGGACCAGCAGTAGAATCGACAACACCCAGGG-GGACCGGGCCGATCCCCAGCTTACGCATTC
*
16097454 TACCT-TTCCGGTCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
195 TACCTCTT-CGGTCAGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
* * **
16097518 CATCCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGATA
259 CATCCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGATA
* * *
16097583 GCACGAAGAAGGGGACTGGGCTGATCCTCGACTTACGCATTTTGCCTCTCCGACTGA
324 GCACAAAGAAGGGGACCGGGCTAATCCTCGACTTACGCATTTTGCCTCTCCGACTGA
* * * * * * * * *
16097640 CCTCT-TCGGCTGGCTGAACGCCCACAGGCTCGTTTCGTGGGTTGACTTCGGCTTATGAACTTCA
1 CCTCTCT-GACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
* *
16097704 -TCCCTAGTTTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATC
65 TTCCAT-GTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATC
16097746 GGATTGGATC
Statistics
Matches: 412, Mismatches: 67, Indels: 13
0.84 0.14 0.03
Matches are distributed among these distances:
379 143 0.35
380 268 0.65
381 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (380 bp):
CCTCTCTGACCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAATCGAACCAAGGGTTACAACA
GCAGGACCAGCAGTAGAATCGACAACACCCAGGGGGACCGGGCCGATCCCCAGCTTACGCATTCT
ACCTCTTCGGTCAGCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
TCCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCAAGATCGATAGC
ACAAAGAAGGGGACCGGGCTAATCCTCGACTTACGCATTTTGCCTCTCCGACTGA
Found at i:16099011 original size:342 final size:342
Alignment explanation
Indices: 16098327--16099102 Score: 850
Period size: 342 Copynumber: 2.3 Consensus size: 342
16098317 CTCCGGTGGG
* * * * *
16098327 CTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAAAG-ATACGGAGTTCATCCCCA-GTCTAA
1 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTT-AGGCATACGGAGTTCAT-TCCATGTCTAA
* ** * * ** * * * * * ** * *
16098390 GTATATGGAGTTCATTCCTAGTCTAAGATCTAATTAGACCGAGGGTTGTGGTAGCAGGATCGGCA
64 GCATACAGAGTTCATTCCCAGTCAAAGATCGGACTGGATCAAAGGTTACGGTAGTAGGATCGACA
* * * * ** * *
16098455 GAATGA-AGGGGGGA-TCGAGCTGATCCCTGGCTTGCGCATTCTGTCTCTCCGACCGGCCGAGCG
129 GCA-CACAGGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACCGAGCG
*** *
16098518 CCCGCACGCCCGTTTGGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
192 CCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * *
16098583 GGATAGAGGGTTGTGGTAGTGGGACCGACAGCAAGCAGAGGGGGACCGGGTCATCCCCGACTTAC
257 AGACAGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAAAGGGGGACCGGGCCATCCCCGACCTAC
*
16098648 GCATTCTCACTCTCCGATCGA
322 GAATTCTCACTCTCCGATCGA
* * * * **
16098669 CTGAGCACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTGTTCCATGTCTAAGC
1 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
16098734 ATCCAGAGTTCCTTCCTAGTCAAAGATCGGACTGGATCAAAGGTTACGGTAGTAGGATCGACAGC
66 ATACAGAGTTCATTCCCAGTCAAAGATCGGACTGGATCAAAGGTTACGGTAGTAGGATCGACAGC
**
16098799 ACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCTG-CCGATTGAGCGCCC
131 ACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GACCGACCGAGCGCCC
*
16098863 GCACGCCCGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC-AAGCCCTAGTCAGA
195 GCACGCCCGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
* * * * **
16098927 CCGAGGGTTGTGGCAGCGGGACC-AGCAGCACGTAAAGGGGG-CTCGGGCCGATCCTCGACCTGT
260 CAGAGGGTTGTGGCAGCGGGACCGA-CAGCAAGCAAAGGGGGAC-CGGGCC-ATCCCCGACCTAC
*
16098990 GAATTCTGC-CTCTCTGATCGA
322 GAATTCT-CACTCTCCGATCGA
16099011 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
16099076 ATACGGAGTTCATTCCCAGTCTAAGAT
66 ATACAGAGTTCATTCCCAGTCAAAGAT
16099103 TTTGAGCCAT
Statistics
Matches: 358, Mismatches: 67, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
340 2 0.01
341 55 0.15
342 298 0.83
343 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCAAAGATCGGACTGGATCAAAGGTTACGGTAGTAGGATCGACAGC
ACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACCGAGCGCCCG
CACGCCCGTTCCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
AGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAAAGGGGGACCGGGCCATCCCCGACCTACGAAT
TCTCACTCTCCGATCGA
Found at i:16099078 original size:26 final size:26
Alignment explanation
Indices: 16099048--16099100 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16099038 GTTGGCTTAG
16099048 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16099074 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16099100 G
1 G
16099101 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16099798 original size:26 final size:26
Alignment explanation
Indices: 16099768--16099820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16099758 GTTGACTTAG
16099768 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16099794 GCATACGGAGTTCCTTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16099820 G
1 G
16099821 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16100413 original size:624 final size:624
Alignment explanation
Indices: 16099220--16101085 Score: 3362
Period size: 624 Copynumber: 3.0 Consensus size: 624
16099210 AGGGGTTCCA
* *
16099220 ACGAATGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
1 ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
16099285 TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
16099350 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
131 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
16099415 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
*
16099480 CTCTACTAAATTTGGGGACAAACTGTTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAAGT
261 CTCTACTAAATTTGGGGACAAACTATTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAAGT
*
16099545 TTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTACGG
326 TTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTAGGG
16099610 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAATGTGCTT
391 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAATGTGCTT
16099675 GAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGGCTGAGCGTC
456 GAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGGCTGAGCGTC
*
16099740 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
521 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
*
16099805 TCCTTCCCATTCTAAGATCAGACCAGACCGAAGGTTACG
586 TCCTTCCCATTCTAAGATCAGACCAGACCGAGGGTTACG
16099844 ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
1 ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
**
16099909 TTGGCCCCCTATCCCTCATCAAACCGTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
16099974 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
131 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
*
16100039 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
*
16100104 CTCTACTAAATTTGGGGACAAACTATTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAGGT
261 CTCTACTAAATTTGGGGACAAACTATTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAAGT
* * *
16100169 TTCAAAAATTGTAAAAAATAGAAAATGGGTCATCTTGCCATGAAACTTCACATCAAGGCGTAGGG
326 TTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTAGGG
*
16100234 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAAAAATATGAAATGTGCTT
391 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAATGTGCTT
* *
16100299 GAACCCACCTACCACCCGTTTGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGACTGAGCGTC
456 GAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGGCTGAGCGTC
16100364 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
521 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
16100429 TCCTTCCCAGTT-TAAGATCAGACCAGACCGAGGGTTACG
586 TCCTTCCCA-TTCTAAGATCAGACCAGACCGAGGGTTACG
16100468 ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
1 ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
16100533 TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
16100597 TAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAA
131 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
16100662 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
196 ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* * *
16100727 CTCTACTAAATTTGGGGACAAACTCTTTTTAAAAAAATTTTAAAAAATCTTGAATCACAAAAAGT
261 CTCTACTAAATTTGGGGACAAACTATTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAAGT
* *
16100792 TTCAAAAATTTTAAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTAGGG
326 TTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTAGGG
*
16100857 GACCATTGTATGAATTTA-AAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAATGTGCTT
391 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAATGTGCTT
* * * * * * *
16100921 GAACCCAGCTACCACTCGTTCGATCCCCGGCTTGCGAATCTTGCCTCTCTAGTTGGCTGAGCGTC
456 GAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGGCTGAGCGTC
* * *
16100986 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC-AAGCATATGGAGT
521 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
*
16101050 TCCTTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
586 TCCTTCCCATTCTAAGATCAGACCAGACCGAGGGTT
16101086 GTGACAGCAG
Statistics
Matches: 1193, Mismatches: 47, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
620 1 0.00
621 45 0.04
622 149 0.12
623 291 0.24
624 705 0.59
625 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (624 bp):
ACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCGCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
ATCTTCTCCACTTCGATCTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
CTCTACTAAATTTGGGGACAAACTATTTCTAAAAAAATTTTAAAAAATCTTGAATCGCAAAAAGT
TTCAAAAATTGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATCAAGGCGTAGGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAAAAATATGAAATGTGCTT
GAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCCTGCCTCTCTAATCGGCTGAGCGTC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCCTTCCCATTCTAAGATCAGACCAGACCGAGGGTTACG
Found at i:16100428 original size:26 final size:26
Alignment explanation
Indices: 16100392--16100444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16100382 GTTGACTTAG
16100392 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16100418 GCATACGGAGTTCCTTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16100444 G
1 G
16100445 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16101548 original size:26 final size:26
Alignment explanation
Indices: 16101512--16101564 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16101502 GTTGGCTTAG
16101512 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16101538 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16101564 G
1 G
16101565 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16102423 original size:26 final size:26
Alignment explanation
Indices: 16102370--16102425 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16102360 TGGGTTGGCT
* *
16102370 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACAGAGTTCATTCCATATC
16102396 TAAGCATACAGAGTTCATTCCCA-ATC
1 TAAGCATACAGAGTTCATT-CCATATC
16102422 TAAG
1 TAAG
16102426 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATATC
Found at i:16102797 original size:26 final size:26
Alignment explanation
Indices: 16102747--16102798 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16102737 GTTGACTTAG
* *
16102747 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAATCTAA
* *
16102773 GCATACGAACTTCATTCTCAATCTAA
1 GCATACGAACTTCATCCCCAATCTAA
16102799 CATCAGACGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAATCTAA
Found at i:16103265 original size:158 final size:159
Alignment explanation
Indices: 16102925--16103288 Score: 396
Period size: 158 Copynumber: 2.3 Consensus size: 159
16102915 TGCACGTCCA
* * * *
16102925 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAGCTGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGCTGGACCGAGGGTT
* * * * * * *
16102990 GTAGTAGCGGGACCAACAGCACATAGAAGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCT
66 GCAGCAGCAGGACCAACAGCACACAGAAGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCT
** * *
16103055 CTTTGGCTGACTCAACGCCCGTACACTCG
131 CTCCGGCTGACTCAACACCCGCACACTCG
* * * *
16103084 TTTGGTGGGTTGACTTA-TGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGG
1 TTTCGTGGGTTGGCTTAGT-CATACGGAGTTCATT-CCATGTCTAAGCACCAG-CTGGACCGAGG
* * * * ** *
16103146 GTTGCGGCAGCAGGATCGACAGCACACAGGA-GGGACCGGGCCGATCCTCGACTTGTGCATTCTG
63 GTTGCAGCAGCAGGACCAACAGCACACAGAAGGGGACCGGGCCGATCCTCGACTTACGCATTATG
* * *
16103210 CCTCTCCGG-TCGACTGAGCACCCGCACGCTCG
128 CCTCTCCGGCT-GACTCAACACCCGCACACTCG
16103242 TTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCA
16103289 TACGGAGTTC
Statistics
Matches: 166, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 89 0.54
159 70 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGCACCAGCTGGACCGAGGGTT
GCAGCAGCAGGACCAACAGCACACAGAAGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCT
CTCCGGCTGACTCAACACCCGCACACTCG
Found at i:16103297 original size:26 final size:26
Alignment explanation
Indices: 16103261--16103312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16103251 TTGGCTTAGT
16103261 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
16103287 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16103313 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16103401 original size:11 final size:11
Alignment explanation
Indices: 16103385--16103410 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
16103375 GGGCACCATT
16103385 GTCGGAGCATC
1 GTCGGAGCATC
16103396 GTCGGAGCATC
1 GTCGGAGCATC
16103407 GTCG
1 GTCG
16103411 TAGAGCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.27, G:0.38, T:0.19
Consensus pattern (11 bp):
GTCGGAGCATC
Found at i:16103831 original size:26 final size:25
Alignment explanation
Indices: 16103790--16103840 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16103780 TTAGGCATAC
*
16103790 GGAGTTCATCCTCAGTCTAAGCATCA
1 GGAGTTCATCCTCAGTATAAG-ATCA
16103816 GGAGTTCATTCC-CAGTATAAGATCA
1 GGAGTTCA-TCCTCAGTATAAGATCA
16103841 AACCAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 16 0.70
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GGAGTTCATCCTCAGTATAAGATCA
Found at i:16104331 original size:26 final size:26
Alignment explanation
Indices: 16104279--16104331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16104269 GTTGGCTTAG
*
16104279 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
16104305 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
16104331 G
1 G
16104332 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:16105165 original size:26 final size:26
Alignment explanation
Indices: 16105135--16105187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105125 GTTGACTTAG
16105135 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16105161 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16105187 G
1 G
16105188 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16105469 original size:159 final size:159
Alignment explanation
Indices: 16105168--16105495 Score: 345
Period size: 159 Copynumber: 2.1 Consensus size: 159
16105158 TAAGCATATG
* * *
16105168 GAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCAGGATCGGTAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCAAGATCGGTAGCACGCA
* * * * * * *
16105233 GGGGGGATCAGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCACGAACGT
66 GGAGGGACCAGGTCGATCCCTAGCATGCGCATTATGCCTCTACGATCGGCTCAGTGCACGAACGC
16105298 TCCTTCCATGGGTTGACTGCAGGCATACT
131 TCCTTCCATGGGTTGACTGCAGGCATACT
* ** * * * * *
16105327 GAGTTTATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGGAAGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCAAGATCGGTAGCACGCA
* * * * * * *
16105392 GGAGGGACCGGGTC-ATTCCCTAGCATGCGCATTCTGCCTTTACGGTCGGCTGAGTGCCCGCACG
66 GGAGGGACCAGGTCGA-TCCCTAGCATGCGCATTATGCCTCTACGATCGGCTCAGTGCACGAACG
* * * * ** *
16105456 CTCGTTTCGTGGGTTG-GTTTAGGCATACG
130 CTCCTTCCATGGGTTGACTGCAGGCATACT
16105485 GAGTTCATTCC
1 GAGTTCATTCC
16105496 ATATCTAAGC
Statistics
Matches: 135, Mismatches: 33, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
158 20 0.15
159 115 0.85
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCAAGATCGGTAGCACGCA
GGAGGGACCAGGTCGATCCCTAGCATGCGCATTATGCCTCTACGATCGGCTCAGTGCACGAACGC
TCCTTCCATGGGTTGACTGCAGGCATACT
Found at i:16106896 original size:26 final size:26
Alignment explanation
Indices: 16106860--16106911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16106850 GTTGGCTTAG
16106860 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16106886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16106912 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16108624 original size:26 final size:26
Alignment explanation
Indices: 16108594--16108698 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
16108584 GTTGACTTAG
*
16108594 GCATATGGTGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16108620 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
16108646 GCATATGGAGTTCAT-TCCATGTCTAA
1 GCATATGGAGTTCATCCCCA-GTCTAA
* *
16108672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16108698 G
1 G
16108699 ATTAGACCGG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 67 0.92
27 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16109054 original size:26 final size:26
Alignment explanation
Indices: 16109024--16109076 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109014 GTTGACTTAG
16109024 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16109050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16109076 G
1 G
16109077 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16109886 original size:26 final size:26
Alignment explanation
Indices: 16109850--16109902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109840 GTTGACTTAG
16109850 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16109876 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16109902 G
1 G
16109903 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16110538 original size:26 final size:26
Alignment explanation
Indices: 16110502--16110554 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16110492 TTTGACTTAT
16110502 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16110528 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16110554 G
1 G
16110555 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16110874 original size:26 final size:26
Alignment explanation
Indices: 16110845--16110897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16110835 GTTGGCTTTG
*
16110845 GCATACGGAGTTAATT-CCATATCTAA
1 GCATACGAAGTTAATTCCCA-ATCTAA
*
16110871 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTAATTCCCAATCTAA
16110897 G
1 G
16110898 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAATCTAA
Found at i:16112072 original size:26 final size:26
Alignment explanation
Indices: 16112042--16112094 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16112032 GTTGGCTCAG
16112042 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16112068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16112094 G
1 G
16112095 ATCGGATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16112281 original size:26 final size:26
Alignment explanation
Indices: 16112251--16112300 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16112241 GTTGACTTAG
16112251 GCATATAGAGTTCATCCCCAGTCTGA
1 GCATATAGAGTTCATCCCCAGTCTGA
* *
16112277 GCATATGGAGTTCATTCCCAGTCT
1 GCATATAGAGTTCATCCCCAGTCT
16112301 AAGATCATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTGA
Found at i:16112866 original size:709 final size:710
Alignment explanation
Indices: 16111500--16112909 Score: 1667
Period size: 709 Copynumber: 2.0 Consensus size: 710
16111490 CGTTCGATCC
* * *
16111500 CCGGTTGAGCATCCGCACGCTCAATTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 CCGGTTGAGCACCCGCACGCTCAATTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
* * * * *
16111565 AAGCATACGAAGTTCATTCCATAGCTAAGATTGAACTGGACCGAGGGTTATGAGAGCAGGATCGA
66 AAGCATACGAAGTTCATTCCACAGCTAAGATTCAACCGGACCGAGGGTTACGAGAGCAGGATAGA
* * * * * *
16111630 CAGCATGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCAGTCGACTGAGTG
131 CAGCACGAAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGTG
* * ** **
16111695 CCCTCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
196 CCCGCACACCCATTTCATCAGTTGGCTTACACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * * * *** *
16111760 GGACCGAGGGTTGTGGCAGTAGGACTGGCACCATGCAGAGGGGGACCGGGCCAATCCCTGGCTTG
261 AGAACGAGGGTTGTGGCAGCAGGACCGGCACCACGCAGAGGGGGACCAGGCCAATCCCCAACTGG
* * * *
16111825 CGCATTATGCCTCTCCGGCCAGCTCCGCGCCCGAACGCTCGTTTCGTGGGTTGACTTACGCATAC
326 CGCATTATGCCTCTCCGGCCAGCTCAGCACCCGAACACTCGTTTCGTGCGTTGACTTACGCATAC
** * *
16111890 AGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCATGC
391 AGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATCGACAACATGC
* * * * * * *
16111955 AGGGGGGACTGGGTCGATCTCCGACTTATGCATTCTGCCTCTCCAGTAGGCTGAGCACCTGCTCG
456 AAGGGGGACTGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTAGGCTGAGCACCCGCACG
*
16112020 CTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
521 CTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGCAGTTCATTC
* * * * * * * * **
16112085 CCAGTCTAAGATCGGATCATACCGAGGGTTGTGGCTGCAGGACTAGTAACAAGATCAGTAGCACG
586 CCAATCTAAGATCAGACCAGACCAAGGGTTGTGGATGCAGGACCAGCAACAAGATCAGTAGCAAA
*
16112150 CAGGGGGGACCGGCCCGATCCCCGACTTGCACATTCTGCCTCCCCGATCGGCCTCTCAAG
651 CAGGGGGGACCGGCCCGATCCCCGACTTGCACATTCTACCTCCCCGATCGGCCTCTCAAG
* * *
16112210 CCGGTTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCT
1 CCGGTTGAGCACCCGCACGCTCAATTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
* * *
16112275 GAGCATATGGAGTTCATTCC-CAGTCTAAGA-TCATACCGGACCGAGGGTTACG-GTAGCAGGAT
66 AAGCATACGAAGTTCATTCCACAG-CTAAGATTCA-ACCGGACCGAGGGTTACGAG-AGCAGGAT
*
16112337 A-AGCAGCACGTAAGGGGGG-TCGAGCCGATCCTCGGA-TTACGCATTCTGCCTCTCC-GACCGA
128 AGA-CAGCACG-AAGGGGGGATCGAGCCGATCC-CCGACTTACGCATTCTGCCTCTCCAG-CCGA
* * *
16112398 CTGAGCT-CCCGCACGCTCATTTCA-CATTTGGCTTACACATAGGGAGTTCATTCCATGTCTAAG
189 CTGAG-TGCCCGCACACCCATTTCATCAGTTGGCTTACACATAGGGAGTTCATTCCATGTCTAAG
* * * * * ***
16112461 CCCCAGTTAGAATGAGGGTTGTGGCAGCGGGACCGGCAGCACGCTGAGGGGGACCAGGTTGATCC
253 CCCCAGCTAGAACGAGGGTTGTGGCAGCAGGACCGGCACCACGCAGAGGGGGACCAGGCCAATCC
* * * *
16112526 CCAACTGGCGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACACTCTTTTCGTGCGTTGGCTT
318 CCAACTGGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGAACACTCGTTTCGTGCGTTGACTT
* * ** *
16112591 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCAGTAGCAGGATCGA
383 ACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATCGA
* * * * *
16112656 CAACATGTAAGGGGGA-TCGAGCCGGTCCCCTACTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
448 CAACATGCAAGGGGGACT-GAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTAGGCTGAGC
* * * *
16112720 GCCCGCACGCTCGTTTCGTGGGTTGGCTTC-GGCATACGGAGTTCATTCCATGTCTAAGCGTATG
512 ACCCGCACGCTCGTTTCATGGGTTGGC-TCAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * * *
16112784 CAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGT-GATAGTAGGACCAGCAGCAGGA
576 CAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTGGAT-GCAGGACCAGCAACAAGA
* ** * * ** *
16112848 TC-GATAGCAAATAGGGGGGACCGGGTCGATCCTCGTCTTGTGCATTCTACCTCTCCGATCGG
640 TCAG-TAGCAAACAGGGGGGACCGGCCCGATCCCCGACTTGCACATTCTACCTCCCCGATCGG
16112910 TTGAGCGCCC
Statistics
Matches: 582, Mismatches: 106, Indels: 25
0.82 0.15 0.04
Matches are distributed among these distances:
708 4 0.01
709 404 0.69
710 163 0.28
711 11 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (710 bp):
CCGGTTGAGCACCCGCACGCTCAATTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
AAGCATACGAAGTTCATTCCACAGCTAAGATTCAACCGGACCGAGGGTTACGAGAGCAGGATAGA
CAGCACGAAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGTG
CCCGCACACCCATTTCATCAGTTGGCTTACACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
AGAACGAGGGTTGTGGCAGCAGGACCGGCACCACGCAGAGGGGGACCAGGCCAATCCCCAACTGG
CGCATTATGCCTCTCCGGCCAGCTCAGCACCCGAACACTCGTTTCGTGCGTTGACTTACGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATCGACAACATGC
AAGGGGGACTGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTAGGCTGAGCACCCGCACG
CTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGCAGTTCATTC
CCAATCTAAGATCAGACCAGACCAAGGGTTGTGGATGCAGGACCAGCAACAAGATCAGTAGCAAA
CAGGGGGGACCGGCCCGATCCCCGACTTGCACATTCTACCTCCCCGATCGGCCTCTCAAG
Found at i:16113148 original size:26 final size:26
Alignment explanation
Indices: 16113118--16113170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16113108 TTTGGCTTAG
*
16113118 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCCT-GTCTAA
16113144 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCTGTCTAA
16113170 G
1 G
16113171 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCTGTCTAA
Found at i:16113651 original size:26 final size:26
Alignment explanation
Indices: 16113615--16113667 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16113605 GTTCGCTTAG
*
16113615 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTCCATTCCTA-GTCTAA
*
16113641 GCATACGGAGTCCATTCCTAGTCTAA
1 GCATAAGGAGTCCATTCCTAGTCTAA
16113667 G
1 G
16113668 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTCCATTCCTAGTCTAA
Found at i:16113858 original size:26 final size:26
Alignment explanation
Indices: 16113822--16113874 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16113812 GTTGACTTAG
16113822 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16113848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16113874 G
1 G
16113875 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16114234 original size:26 final size:26
Alignment explanation
Indices: 16114188--16114237 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16114178 GGCTTAGGCA
*
16114188 TACGGAGTTCATTCTATGTCTAAGCT
1 TACGGAGTTCATTCCATGTCTAAGCT
16114214 TACGGAGTTCATTCCCA-GTCTAAG
1 TACGGAGTTCATT-CCATGTCTAAG
16114238 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGCT
Found at i:16114944 original size:11 final size:11
Alignment explanation
Indices: 16114928--16114960 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16114918 CCCGAGGCAC
16114928 CATCGTTGGAG
1 CATCGTTGGAG
16114939 CATCGTTGGAG
1 CATCGTTGGAG
*
16114950 CATCGTCGGAG
1 CATCGTTGGAG
16114961 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.21, G:0.36, T:0.24
Consensus pattern (11 bp):
CATCGTTGGAG
Found at i:16115757 original size:26 final size:26
Alignment explanation
Indices: 16115727--16115779 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16115717 GTTGGCTTAG
16115727 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
16115753 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16115779 G
1 G
16115780 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16115958 original size:26 final size:26
Alignment explanation
Indices: 16115922--16115972 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16115912 GTTGACTTAG
16115922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16115948 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16115973 GGATTAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16116132 original size:184 final size:190
Alignment explanation
Indices: 16115709--16116132 Score: 434
Period size: 184 Copynumber: 2.2 Consensus size: 190
16115699 CGTACGCTCG
*
16115709 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAG
*
16115774 TCTAAGATTGGATCAGACCGAGGGTTGCGGTAGTAGGACCAGCACAAGATCGATAGCACACAGGG
66 TCTAAGATTAGATCAGACCGAGGGTT--GG-AGTAGGA-CAG-ACAAGATCGATAGCACACAGGG
* * * * ** *
16115839 AGGGACCGAGATGATCCTCGACTTGCGCATCTGCCTCTCCGATCGGCTGAGCACCAACACGTTCG
126 AGGGACCGAGATGATCCCCGACTTGCGCATCTGCCTCTCCGACCAGCTGAACACCAACACGCCCA
** * *
16115904 TTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCTA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCTA
* * * * * * *
16115968 GTCTAGGATTAGA-CTGGATCGAGGG-T-G-G-CGG-CAG-CAAGATCGGTAGCACGCATGG-GG
65 GTCTAAGATTAGATC-AGACCGAGGGTTGGAGTAGGACAGACAAGATCGATAGCACACAGGGAGG
* * * * * * ** *
16116025 GACCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCAGTTGAACGCCCGCATGCCCA
129 GACCGAGATGATCCCCGACTTGCGCA-TCTGCCTCTCCGACCAGCTGAACACCAACACGCCCA
* *
16116088 TTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16116133 ACCCAGCCAG
Statistics
Matches: 190, Mismatches: 35, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
183 27 0.14
184 77 0.41
186 3 0.02
188 2 0.01
189 1 0.01
191 1 0.01
194 2 0.01
195 74 0.39
196 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (190 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAG
TCTAAGATTAGATCAGACCGAGGGTTGGAGTAGGACAGACAAGATCGATAGCACACAGGGAGGGA
CCGAGATGATCCCCGACTTGCGCATCTGCCTCTCCGACCAGCTGAACACCAACACGCCCA
Found at i:16116295 original size:26 final size:25
Alignment explanation
Indices: 16116264--16116315 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
16116254 GTTGGCTTAG
16116264 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
16116290 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
16116315 G
1 G
16116316 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:16117014 original size:26 final size:26
Alignment explanation
Indices: 16116984--16117036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116974 GTTGACTTAG
16116984 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
16117010 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16117036 G
1 G
16117037 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16117514 original size:26 final size:26
Alignment explanation
Indices: 16117478--16117530 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117468 GTTGGCTTAG
16117478 GCATACGGAGTACATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
*
16117504 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
16117530 G
1 G
16117531 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:16117874 original size:26 final size:26
Alignment explanation
Indices: 16117845--16117897 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117835 GTTAACTTAG
*
16117845 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16117871 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16117897 G
1 G
16117898 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16118381 original size:26 final size:26
Alignment explanation
Indices: 16118345--16118396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16118335 GTTGGCTTAG
16118345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16118371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16118397 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16118772 original size:26 final size:26
Alignment explanation
Indices: 16118743--16118795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16118733 GTGGGCTTAG
*
16118743 GCATACGGAGTTTATTCCAT-GTCTAA
1 GCATACGGAGTTCATTCC-TGGTCTAA
16118769 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTGGTCTAA
16118795 G
1 G
16118796 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTGGTCTAA
Found at i:16119534 original size:158 final size:158
Alignment explanation
Indices: 16119138--16119558 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
16119128 GGGGATCGAG
* * * * * *
16119138 CCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCTACTGAGCACCCGCACGCTCGTTTCGTGGG
1 CCGATCCCTGGCTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGG
* ** * ** * ** *
16119203 TTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCTCAGTCGGACCGAGGGTTGTGGCAGCG
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAACCGAACCGAGGGTTACGGCAACG
*
16119268 AGACCGACAGCACGCAGAGGACGATCGGG
131 AGACCGACAGCACGCAGAGGA-GATCGGA
* * * * * * * * * *
16119297 CCGATCCTTGGCTTGAGCATTATGCCACTCCGACTGGCTCAGCGCTCGAACACCCGTTTCGTGCG
1 CCGATCCCTGGCTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGG
* **
16119362 TTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCGAACCGAACCGAGGGTTACGGCAA
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATC-AACCGAACCGAGGGTTACGGCAA
*
16119425 C-AGGATCGACAGCACGCAGGAGG-GATCGGA
129 CGA-GACCGACAGCACGCA-GAGGAGATCGGA
* * * *
16119455 CCGGTCCCTGGCTT-ACGCATTCTGCCTCTCCGACCGATTGAGCGCCCGCACTCTCGTTTCATGG
1 CCGATCCCTGGCTTGA-GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGG
16119519 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
65 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
16119559 ACGGAGTTCA
Statistics
Matches: 207, Mismatches: 48, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 87 0.42
159 109 0.53
160 7 0.03
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
CCGATCCCTGGCTTGAGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAACCGAACCGAGGGTTACGGCAACG
AGACCGACAGCACGCAGAGGAGATCGGA
Found at i:16119559 original size:26 final size:26
Alignment explanation
Indices: 16119529--16119581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16119519 GTTGGCTTAG
16119529 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATTCC-TGGTCTAA
16119555 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTGGTCTAA
16119581 G
1 G
16119582 ATCAGACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTGGTCTAA
Found at i:16119942 original size:855 final size:857
Alignment explanation
Indices: 16118802--16122720 Score: 4626
Period size: 855 Copynumber: 4.5 Consensus size: 857
16118792 TAAGATCAGA
* * *
16118802 CCCGACTTGTGCATTCTTCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATAGGTGGGCT
1 CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
* * * * *
16118867 TAGGCATACGAAGTTCATTCCATGTCTAAGCAACAACCGGATCAAGGGTTGTGGCAGCAGGCCGG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGCCGGATCGAGGGTTGTGGCAGCAGACCGA
* * * *
16118932 TAACGGGATC-AGCAGAACACAGAAGGGTACCGAGCTGATCCTCGATTTACGTATTATGCCTCTT
131 TAGCGGGATCGA-CAGAACACAGAAGGGTACCGAGCTGATCCCCGACTTACGCATTATGCCTCTT
* * *
16118996 CGATCGGTTGAGCACCCGCACGCTTGTTTCATGGGTTGACTCAGGCATACAGAGTTCATCCCCAG
195 CGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
* *
16119061 TCTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACAAGATCGAGGGTTGCA-A-CAGCACA
260 TCTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGAGGGTTGCAGAGCAGCACG
* *
16119124 TAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCTACTGAGCACCCGCAC
325 CAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCAC
*
16119189 GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCTCAGTCGGACCGA
390 GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCCCAGTCGGACCGA
* * **
16119254 GGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGACGATCGGGCCGATCCTTGGCTTGAGCATTA
455 GGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGACGACCGGGCCGATCCCCGGCTTGAGCATTA
* *
16119319 TGCCACTCCGACTGGCTCAGCGCTCGAACACCCGTTTCGTGCGTTGACTTAGGCATACAAAGTTC
520 TGCCACTCCGACTGGCTCAGCGCTCGAACACTCGTTTCGTGCGTTGACTTAGGCATACGAAGTTC
* * *
16119384 ATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGGCAACAGGATCGACAGCACGCAGGAGGG
585 ATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAACAGGATCAACAGCACGCAGGAGGG
** *
16119449 ATCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGATTGAGCGCCCGCACTCTCGTTT
650 ATCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTT
*
16119514 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTGGTCT
715 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTGGTCT
*
16119579 AAGATCAGA-CAGAACCAAGGGTTGCGACAGCAGGACCAACAGTAGGATCGGTAGCACATAGGGG
780 AAGATCAGATC-GAACCAAGGGTTGCGACAGCAGGACCAACAGTAGGATCGATAGCACATAGGGG
16119643 GGACCGGGCCGATC
844 GGACCGGGCCGATC
* * *
16119657 CCCGGCTTGTGCATTCTACCTCTCTAGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
1 CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
* * *
16119722 TAGGCATACGGAGTTCATTCCATGTCTAAGCAATAGCCGGATCGAGGGTTGTGGTAGCAGATCGA
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGCCGGATCGAGGGTTGTGGCAGCAGACCGA
* *
16119787 TAGCGGGATCGACAGAACACAGAGGGGTACCGGGCTGATCCCCGACTTACGCATTATGCCTCTTC
131 TAGCGGGATCGACAGAACACAGAAGGGTACCGAGCTGATCCCCGACTTACGCATTATGCCTCTTC
*
16119852 GATCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
196 GATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
*
16119917 CTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGAGGGTTGC--AGCAGCACGT
261 CTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGAGGGTTGCAGAGCAGCACGC
* * *
16119980 AAGGGGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCTACTGAGCACCCGCACG
326 AGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACG
* * *
16120045 CTCGTTTCGTGGGTTGGTTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAATCGGACCGAG
391 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCCCAGTCGGACCGAG
* * *
16120110 GGTTGTGGCAGTGAGACCGGTAGCACGCAGAGGACGACCGGGCCGAT-CTCGGCTTGAGCATTAT
456 GGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGACGACCGGGCCGATCCCCGGCTTGAGCATTAT
** * * * * *
16120174 GCCACTCTAACCGTCTCAAGCGCTCGAACACTCGTTTCGTGCGTTG-CTTAGGCGTATGGAGTTC
521 GCCACTCCGACTGGCTC-AGCGCTCGAACACTCGTTTCGTGCGTTGACTTAGGCATACGAAGTTC
* * * *
16120238 ATTCCCAGTCTAAGATCGTACCGAGCCGAGGGTTGCGGCAACAGGATCGACAGCACACAGGAGGG
585 ATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAACAGGATCAACAGCACGCAGGAGGG
* * * *
16120303 ATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGTTGAACGCCCGCACGCTCGTTT
650 ATCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTT
* *
16120368 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTAAGCATACGGAGTTCATTCCTGGTCT
715 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTGGTCT
* *
16120433 AAGATCAGATCGAACCAAGGGTTGTGACAGCAGGACCAACAGTAGGATCGATAGCACGTA-GGGG
780 AAGATCAGATCGAACCAAGGGTTGCGACAGCAGGACCAACAGTAGGATCGATAGCACATAGGGGG
16120497 GACC-GGCCGATC
845 GACCGGGCCGATC
* * * * *
16120509 CCCAGCTTATGCATTCTGCCTCTCTGGCCGACTGAGCTCCTGCACGCTCGTTTCATGGGTGGGCT
1 CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
* * * * *
16120574 TAGGTATACAGAGTTCATTCCATGTCTAAGCAACAGTCGGATCGAGGGTTGTAGCAACAGGACCG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGCCGGATCGAGGGTTGTGGCAGCA-GACCG
* * * * * * *
16120639 GTAGCGAGATCGACAGAACACAGAGGGGTA-CAAGCTGATCCCCGGCTTGCGCATTATGCCTCTC
130 ATAGCGGGATCGACAGAACACAGAAGGGTACCGAGCTGATCCCCGACTTACGCATTATGCCTCTT
* *
16120703 CGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
195 CGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
* * *
16120768 TCAAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGAT
260 TCTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGAGGGTT---GCAG-A-G--
* * *
16120833 CGATAGCACGCAGGGGGGATCGAGCCGAT-CCCGACTTATGCATTCTGCCTCTCTGGCCGACTGA
318 C---AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGA
* * *
16120897 GCACCCGCACGCTCGTTTAGCGGGTTGGCTTAGGCATAGAGAGCCCATTCCATGTCTAAGCCCCA
380 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCCCA
* * * * * * * * * *
16120962 GTCAGACTGAGGGTTGTGGCAGCGAGACCGGTAGTACACAGAGGACGATCGAGCTGATCCCTGGT
445 GTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGACGACCGGGCCGATCCCCGGC
* *
16121027 TTGAGCATTATGCCATTCCGAC-CGCTCAGCGCTCGAACACTCGTTTCGTGCGTTGACTTAGGCA
510 TTGAGCATTATGCCACTCCGACTGGCTCAGCGCTCGAACACTCGTTTCGTGCGTTGACTTAGGCA
*
16121091 TACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTGA-GGTTGCGGCAACAGGATCAACAGCA
575 TACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAACAGGATCAACAGCA
* * *
16121155 CGCAGGAGGGATCGGACTGGTCCCTGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGCCAGC
640 CGCAGGAGGGATCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
*
16121220 ACGCTCGTTTCATGGGTTAGG-TTAGGCATACGGAGTTCATTCCATGTCTAAGTATACAGAGTTC
705 ACGCTCGTTTCATGGGTT-GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
* * * * *
16121284 ATT-GTCGGTCTAAGATTAGATCGGACCAAGGGTTGCGATAGCAGGACCGACAGTAGGATCGACA
769 ATTCCT-GGTCTAAGATCAGATCGAACCAAGGGTTGCGACAGCAGGACCAACAGTAGGATCG--A
* *
16121348 GTAGACCAACAGCAGGACCGATAGCACGTAGGGGGGACCGAGTCGATC
831 -T-----------A-G--C---A-CA--TAGGGGGGACCGGGCCGATC
* * * *
16121396 CCCGACTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTAGGCT
1 CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
* * * *
16121461 TAGGCATACAGAGTTCATTCCATGTCTAAGCAACAGCCAGACCGAGAGTTGTGGCAGCAGGACCG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGCCGGATCGAGGGTTGTGGCAGCA-GACCG
* ** *
16121526 ACAGCGGGATCGACAGAATGCAGAAGGGTACCGAGCTGATTACCCG-CTTACGCATTATGCCTC-
130 ATAGCGGGATCGACAGAACACAGAAGGGTACCGAGCTGA-TCCCCGACTTACGCATTATGCCTCT
* * * * * *
16121589 TCTGACCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCC
194 TC-GATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
* * *
16121654 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGA-CCATGGGTTGCGGTAGTAG
258 AGTCTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGA-GGGTTGC------A-
* *
16121718 GATCGGCAGCACGCAGGGGGGATCGA-CCGATCCCCGGCTTGTGCATTCTGCCTCTCTGACCGAC
315 GA---GCAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGAC
* * * * *
16121782 TAAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTTGGCATAGGGAGCTCATTCCATGTCTAAGCC
377 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCC
* * * * * *
16121847 CCAGTCGGACAGAGTGTTGTGGCAGCGAGACCGGCAGCATGCAAAGGATGACCGGGCTGATCCCC
442 CCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGACGACCGGGCCGATCCCC
* * * * *
16121912 GGTTTGAGCGTTATGCCACTCCGACTGGCTCAGCGCCCGAACACTCATTTCGTGCGTTGACTTGG
507 GGCTTGAGCATTATGCCACTCCGACTGGCTCAGCGCTCGAACACTCGTTTCGTGCGTTGACTTAG
* * * * * *
16121977 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTT--TGCATAGTAGGATCA
572 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCA-A-CAGGATCA
* * * * * * * * * *
16122039 ACAGCACGTAAGG-GGGACCGGGCCAGTCCCCGGTTTATGCATTCTGCCTCTCTGGCTGGCTGAG
634 ACAGCACG-CAGGAGGGATCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAG
* * * * *
16122103 CGCCTGCACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
698 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
** * * ** * * *
16122168 GAGTTCATTCCCAGTCTACGATCAGA-CCAGACCAAGGGTTATGACAGCAGAACCAGCA-CAGGA
763 GAGTTCATTCCTGGTCTAAGATCAGATCGA-ACCAAGGGTTGCGACAGCAGGACCAACAGTAGGA
*
16122231 TCGATAGCACGTAGAGGGGGACCGGGCCGATC
827 TCGATAGCACATAG-GGGGGACCGGGCCGATC
* * ** ** ** * * *
16122263 CGCAGCTTACGCATTCTGCCTCTCCAGTTGGTTGAGCACCTGCACGCTCGTTTCATGGGTTGGCT
1 CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
* * ** * * *
16122328 TAGGCATATGGAGTTTATTCCATGTCTAAGCCCCCAGTCGGATCGAGGGTTGTGGTAGCAAGACT
66 TAGGCATACGGAGTTCATTCCATGTCTAAG-CAACAGCCGGATCGAGGGTTGTGGCAGC-AGACC
* * * *
16122393 GACAGCGGGATCGACAGCACGA-AGAAAGGG-ACCGAGCTGATCCTCGGCTTACGCATTATGCCT
129 GATAGCGGGATCGACAGAAC-ACAG-AAGGGTACCGAGCTGATCCCCGACTTACGCATTATG---
* * *
16122456 CTTCGTCCGACCGACCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTGT-G
189 C--C-T---------CT-T-CGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT-TAG
* * *
16122520 GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAATCTAAGAATAG-ACCAGA
239 GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCTAGTCTAAG-ATCGAACCAGA
16122584 -CTGAGGGTTCTGACAATAGAACCAGCAGCAGGATCGATAGCACGCAGAGGGGATC-AGGCCGAT
303 TC-GAGGG-T-TG-C---AG----AGCAGC---A-C----GCA-G--G-GGGGATCGA-GCCGAT
* * * *
16122647 CCCCGGCTTGTTCATTCTGCCTCTTCGGCCTACTGAGCACTCGCACGCTCGTTTCGTGGGTTGGC
344 CCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
16122712 TTAGGCATA
409 TTAGGCATA
16122721 CGAAGTTCAT
Statistics
Matches: 2659, Mismatches: 288, Indels: 191
0.85 0.09 0.06
Matches are distributed among these distances:
852 257 0.10
853 40 0.02
854 284 0.11
855 493 0.19
856 1 0.00
858 1 0.00
859 1 0.00
861 2 0.00
862 220 0.08
863 186 0.07
864 45 0.02
865 1 0.00
866 3 0.00
867 101 0.04
868 68 0.03
869 7 0.00
871 1 0.00
872 1 0.00
873 1 0.00
874 2 0.00
875 1 0.00
876 1 0.00
877 1 0.00
879 1 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 110 0.04
886 16 0.01
887 155 0.06
888 318 0.12
889 86 0.03
890 160 0.06
891 6 0.00
892 1 0.00
893 5 0.00
894 1 0.00
896 2 0.00
897 7 0.00
898 69 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (857 bp):
CCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTGGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGCCGGATCGAGGGTTGTGGCAGCAGACCGA
TAGCGGGATCGACAGAACACAGAAGGGTACCGAGCTGATCCCCGACTTACGCATTATGCCTCTTC
GATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
CTAAGCATACAGAGTTCATTTCTAGTCTAAGATCGAACCAGATCGAGGGTTGCAGAGCAGCACGC
AGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCCCATTCCATGTCTAAGCCCCAGTCGGACCGAG
GGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGACGACCGGGCCGATCCCCGGCTTGAGCATTAT
GCCACTCCGACTGGCTCAGCGCTCGAACACTCGTTTCGTGCGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAACAGGATCAACAGCACGCAGGAGGGA
TCGGACCGGTCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTGGTCTA
AGATCAGATCGAACCAAGGGTTGCGACAGCAGGACCAACAGTAGGATCGATAGCACATAGGGGGG
ACCGGGCCGATC
Found at i:16120413 original size:26 final size:26
Alignment explanation
Indices: 16120383--16120435 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16120373 GTTGGCTTAG
16120383 GCATACGGAGTTCATTCCAGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
*
16120409 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
16120435 G
1 G
16120436 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:16121346 original size:12 final size:12
Alignment explanation
Indices: 16121326--16121368 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
16121316 TTGCGATAGC
16121326 AGGACCGACAGT
1 AGGACCGACAGT
*
16121338 AGGATCGACAGT
1 AGGACCGACAGT
* *
16121350 A-GACCAACAGC
1 AGGACCGACAGT
16121361 AGGACCGA
1 AGGACCGA
16121369 TAGCACGTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 8 0.32
12 17 0.68
ACGTcount: A:0.37, C:0.26, G:0.30, T:0.07
Consensus pattern (12 bp):
AGGACCGACAGT
Found at i:16121373 original size:12 final size:12
Alignment explanation
Indices: 16121323--16121373 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
16121313 GGGTTGCGAT
16121323 AGCAGGACCGAC
1 AGCAGGACCGAC
* *
16121335 AGTAGGATCGAC
1 AGCAGGACCGAC
* *
16121347 AGTA-GACCAAC
1 AGCAGGACCGAC
*
16121358 AGCAGGACCGAT
1 AGCAGGACCGAC
16121370 AGCA
1 AGCA
16121374 CGTAGGGGGG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
11 8 0.26
12 23 0.74
ACGTcount: A:0.37, C:0.25, G:0.29, T:0.08
Consensus pattern (12 bp):
AGCAGGACCGAC
Found at i:16122570 original size:26 final size:26
Alignment explanation
Indices: 16122520--16122572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16122510 GTTGACTGTG
*
16122520 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
**
16122546 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16122572 G
1 G
16122573 AATAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16127810 original size:153 final size:150
Alignment explanation
Indices: 16127537--16127947 Score: 482
Period size: 153 Copynumber: 2.7 Consensus size: 150
16127527 NNNNNNNNAC
* *
16127537 GAGGGGACCGGCCAATCCC-GGCTTGCGCATTCTGCCTCTCCGA-C-CAGCAGCACCGCAC-C-C
1 GAGGGGATCGGGCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTCAGC-GC-CCGCACGCTC
*
16127597 GTTTCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTT-
64 GTTTCTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTG
*
16127661 GTGGCAGCGGGACCG-CAGCACACA
128 GTGGCA--AGGACCGACAGCACACA
* * *
16127685 GAGGGGATCGGGCGATCCCTGGCTTGCGCATTATGCCTCTTCGACGCTCAGCGCCCGCACGCTCG
1 GAGGGGATCGGGCAATCCCTGGCTTGCGCATTCTGCCTCTCCGAC-CTCAGCGCCCGCACGCTCG
* * ** * *
16127750 TTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGTTT
65 TTTC-TGGGTTGGCTTAGGCATACGAGTTCATT-CCATGTCTAAG-CCCCACCGGACCGAGGGTT
* *
16127814 GGTGGCAAGGATCGACAGCACGCA
127 GGTGGCAAGGACCGACAGCACACA
* *
16127838 G-GGGGATCGGGTCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGTGAGCGCCC-CACGCTC
1 GAGGGGATCGGG-CAATCCCTGGCTTGCGCATTCTGCCTCTCCGACC-TCAGCGCCCGCACGCTC
16127901 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GTTTC-TGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGC
16127948 ATACGGAGTT
Statistics
Matches: 225, Mismatches: 23, Indels: 26
0.82 0.08 0.09
Matches are distributed among these distances:
148 16 0.07
149 22 0.10
150 6 0.03
151 4 0.02
152 75 0.33
153 96 0.43
154 6 0.03
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (150 bp):
GAGGGGATCGGGCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCTCAGCGCCCGCACGCTCGT
TTCTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGGTG
GCAAGGACCGACAGCACACA
Found at i:16127950 original size:26 final size:26
Alignment explanation
Indices: 16127920--16127972 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16127910 GTTGGCTTAG
16127920 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16127946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16127972 G
1 G
16127973 ATCGGATGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16128326 original size:26 final size:26
Alignment explanation
Indices: 16128288--16128341 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16128278 GGGTTGACTT
16128288 AGCATACGAAGTTTCA-TCCCAATCTA
1 AGCATACGAAG-TTCATTCCCAATCTA
* *
16128314 AGCATACGGAGTTCATTCCTAATCTA
1 AGCATACGAAGTTCATTCCCAATCTA
16128340 AG
1 AG
16128342 ATTCAGACGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAATCTA
Found at i:16128687 original size:26 final size:26
Alignment explanation
Indices: 16128635--16128687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16128625 GTTGGCTTAG
* * *
16128635 GCATAGGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16128661 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16128687 G
1 G
16128688 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16128980 original size:343 final size:345
Alignment explanation
Indices: 16128268--16128992 Score: 765
Period size: 343 Copynumber: 2.1 Consensus size: 345
16128258 GCCCACAGCT
*
16128268 CATTTACGTGGGGTTGACTTA-GCATACGAAGTTTCATCCCAATCTAAGCATACGGAGTTCATTC
1 CATTT-CG-GGGGTTGACTTAGGCATACGGAG-TTCATCCCAATCTAAGCATACGGAGTTCATTC
* * * * *
16128332 CTAATCTAAGATTCAGACGCAGATCGAAGGTTGGCGACGCAGGATGGTAAGCATGCAGGGGGGAT
63 CCAATCTAAGATTCAGACGCAGACCGAAGGTTGGCGACGCAGGATCGTAAGCAAGCAGGGGGGAC
* * * * *
16128397 CGGGTCGATCCTCGACTTGTGCTTCTAAGCCTCTCCGATTGGTTGAGCCCCTGCACGCCGTTTCA
128 CGAGTCGATCCCCGACTTGCGCTTCTAAGCCTCTCCGATCGATTGAGCCCCTGCACGCCGTTTCA
* * *
16128462 TGGGTTGGCTTAGTCATAGGGAGTTCAATTCCATGTCTAAGCCCCAGCTGGGCCAAGGGTTGTGG
193 TGGGTTGGCTTAGGCATACGGAGTTCAATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGG
** ** * * * * * *
16128527 CAGCGGGTTCGGTAGCACGTCGGAGGGACCGGTCCGATCCCCAGCTTGACGTATTCTGCCTCTTC
258 CAGCGGGACCGACAGCACGTAGGAGGGACCGGGCCGATCCCCAACTTGACGCATTATGCCTCTCC
* * *
16128592 GACAGGCTGAGCGCTCGCACGCC
323 GACAGGCTCAGCACTCGAACGCC
* * * * *
16128615 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCCCCAGTGTAAGCATACGGAGTTCATTCCC
1 CATTTCGGGGGTTGACTTAGGCATACGGAGTTCAT-CCCAATCTAAGCATACGGAGTTCATTCCC
* * *
16128680 AATCTAAGA-TCGGA-TCAGACCGAGGGTT-GCGGTA-GCAGGATCG-ACAGCAAGCAGGGGGGA
65 AATCTAAGATTCAGACGCAGACCGAAGGTTGGC-G-ACGCAGGATCGTA-AGCAAGCAGGGGGGA
** * *
16128740 CCGAGTCGATCCCCGGGTTGCGCATTCT-A-CCTCTCCGATCGATTGAGCACCC-GTATGCTCGT
127 CCGAGTCGATCCCCGACTTGCGC-TTCTAAGCCTCTCCGATCGATTGAGC-CCCTGCACGC-CGT
***
16128802 TTCATGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCCCCAG-TCGGATTGAGGGT
189 TTCATGGGTTGGCTTAGGCATACGGAGTTCAATTCCATGTCTAAGCCCCAGCT-GGACCAAGGGT
* * * * *
16128865 TGTGGTAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCTGATCCCTAACTTG-CGCATTATGC
253 TGTGGCAGCGGGACCGACAGCACGTAG-GAGGGACCGGGCCGATCCCCAACTTGACGCATTATGC
* * *
16128929 CTCTCCGATCA-GCTCAGCACTTGAATGCT
317 CTCTCCGA-CAGGCTCAGCACTCGAACGCC
* * *
16128958 CATTTTGGGGGTTGATTTAGGCATATGGAGTTCAT
1 CATTTCGGGGGTTGACTTAGGCATACGGAGTTCAT
16128993 TCCTAGTCTA
Statistics
Matches: 312, Mismatches: 55, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
342 1 0.00
343 129 0.41
344 108 0.35
345 24 0.08
346 45 0.14
347 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (345 bp):
CATTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCAATCTAAGCATACGGAGTTCATTCCCA
ATCTAAGATTCAGACGCAGACCGAAGGTTGGCGACGCAGGATCGTAAGCAAGCAGGGGGGACCGA
GTCGATCCCCGACTTGCGCTTCTAAGCCTCTCCGATCGATTGAGCCCCTGCACGCCGTTTCATGG
GTTGGCTTAGGCATACGGAGTTCAATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAG
CGGGACCGACAGCACGTAGGAGGGACCGGGCCGATCCCCAACTTGACGCATTATGCCTCTCCGAC
AGGCTCAGCACTCGAACGCC
Found at i:16129146 original size:158 final size:157
Alignment explanation
Indices: 16128661--16129162 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
16128651 CCCAGTGTAA
* * * *
16128661 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * * ** * *
16128726 GCAAGCAGGGGGGACCGAGTCGATCCCCGGGTTGCGCATTCTACCTCTCCGATCGATTGAGCACC
66 GCACGCAGGGGGGACTGGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
*
16128791 CGTATGCTCGTTTCATGGGTTGGCTTAG
130 CGAATGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
16128819 GCATACGGAGTTCATTCC-ATGTCTAAG-CCCCAGTCGGATTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCGGA-TCGGATCGAGGGTTGCGGTAGCAGGATCGA
* * * *
16128882 CAGCACGTAGAGGGGGA-TCGGG-CTGATCCCTAACTTGCGCATTATGCCTCTCCGATC-AGCTC
64 CAGCACGCAG-GGGGGACT-GGGTC-GATCCC-GACTTGCGCATTCTGCCTCTCCGATCGA-CTG
** * *** **
16128944 AGCACTTGAATGCTCATTTTGGGGGTTGATTTAG
124 AGCACCCGAATGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
16128978 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTACAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * *
16129043 GCACGCAGGGGGGACTGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCC
66 GCACGCAGGGGGGACTGGGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
* * * *
16129108 CGCACGTTCGTTTCATGGGTTGGGTTAG
130 CGAATGCTCGTTTCATGGGTTGGCTTAG
*
16129136 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCTAGTCTAAG
16129163 CATACGAAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 146 0.54
159 116 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACTGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCC
GAATGCTCGTTTCATGGGTTGGCTTAG
Found at i:16129166 original size:26 final size:26
Alignment explanation
Indices: 16129136--16129188 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16129126 GTTGGGTTAG
* *
16129136 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16129162 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16129188 G
1 G
16129189 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16129533 original size:26 final size:26
Alignment explanation
Indices: 16129504--16129556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16129494 GTTGACTTAG
16129504 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16129530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16129556 G
1 G
16129557 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16129849 original size:159 final size:159
Alignment explanation
Indices: 16129656--16130063 Score: 462
Period size: 159 Copynumber: 2.6 Consensus size: 159
16129646 CAGTTGAGTG
* * *
16129656 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACC
* * *
16129721 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCAAGC-AGAGGGGGACCGAGTCGATCCTCAGCTT
66 GGACCGAGGGTTGTGGCAGCAGGATCAACAGCAAGCAAG-GGGGGACCGAGTCAATCCTCAGCTT
* *
16129785 GCACATTATTCCTCTT-CGACTGGCTCAGCA
130 GCACATTATGCCT-TTCCAACTGGCTCAGCA
* * ** ** * *
16129815 CCCGCACGTTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTAAGATCAAAT
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAT-GTCTAAGCCCCAAC
* * * * * *
16129879 CGGACTGAGGGTTGCGGCAGCAGGATCAACAGCATGGAAGGGGGGACCGGGTCAATCCTCGGCTT
65 CGGACCGAGGGTTGTGGCAGCAGGATCAACAGCAAGCAAGGGGGGACCGAGTCAATCCTCAGCTT
* * * **
16129944 GCGCATTCTGCCTTTCCAACTGGCTGAGTG
130 GCACATTATGCCTTTCCAACTGGCTCAGCA
* * *
16129974 CCCGCATGCTCGTTTCATGGGTTGGCCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGC
1 CCCGCACGCTCGTTTCATGGGTT-GACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAAC
* * *
16130039 CGGATCAAGGGTTGTGGTAGCAGGA
65 CGGACCGAGGGTTGTGGCAGCAGGA
16130064 CCGGCAGTGG
Statistics
Matches: 201, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 3 0.01
159 145 0.72
160 52 0.26
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACC
GGACCGAGGGTTGTGGCAGCAGGATCAACAGCAAGCAAGGGGGGACCGAGTCAATCCTCAGCTTG
CACATTATGCCTTTCCAACTGGCTCAGCA
Found at i:16130508 original size:687 final size:674
Alignment explanation
Indices: 16129225--16131412 Score: 2098
Period size: 687 Copynumber: 3.2 Consensus size: 674
16129215 GCAGGACCAA
* ** * *
16129225 CAGCAGGATCGACAGCATGCAGGGGGGACCAAG-CTGATTCCT-GGCTTGCACATTCTGCCTCTC
1 CAGCAGGATCGACAGCATGAAGGGGGGACCGGGTC-GA-TCCTCGACTTGCGCATTCTGCCTCTC
* * ** * * * * * *
16129288 TGA-TCGACTTGAGCACCCTCATGCTCGTTTCATGGGTTGGCCTAGGCATACGAAGTTCATTTCG
64 -CACT-GGC-TGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * * * * * * *
16129352 TGTCTAATCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCGGCAATGGGATCGGCAGCACGGA
126 TGTCTAAGCCCCAGCCGGATCAAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGACAGCATGCA
** * * * *
16129417 GAGGGGGACCTTGCTGATCCC--C--GGC-TTACG-C-ATT--ATGCCTCTCTGATCGGCTGAGC
191 GAGGGGGA-CGAGCTGATCCCTACTTGGCATTATGCCTCTTCGATGCCTCTCCGATAGGCTGAGC
16129473 ACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
255 ACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* **
16129538 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGA-GGTTGCGACAGCAGGATCAACAGCACGCAA
320 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCAGTAGCACGCAA
* * * * * *
16129602 GGAGGACCAGACCTATCCCCGAC-TTGGCATTCTACCTCTCCGACCAGTTGAGTGCCCGCATGCC
385 GG-GGACAAG-CCAATCCCTGACTTTCGCATTCTACCTCTCCGATCGGTTGAGTGCCCG-ATGCC
*
16129666 CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
447 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ACCGGACCGAGGG
* * * * * * *
16129731 TTGTGGCAGCGGGATCGACAGCAAGCAGAGGGGGACCGAGTCGATCCTCAGCTTGCACATTATTC
511 TTGTGGCAGCGGGATTGGCAGCAAGTAGAGGGGGACC-AGGCGATCCCCAGCTTGCGCATTATGC
* * *
16129796 CTCTTCGACTGGCTCAGCACCCGCACGTTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATT
575 CTCTTCGACTGGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATT
*
16129861 CCTAGTCTAAGATCAAATCGGACTGAGGGTTGCGG
640 CCTAGTCTAAGATCAAATCGGACCGAGGGTTGCGG
* * * *
16129896 CAGCAGGATCAACAGCATGGAAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTTTCC
1 CAGCAGGATCGACAGCAT-GAAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCC
* *
16129961 AACTGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCCTTAGGCATATGGAGTTCATTCCATG
65 -ACTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGG-CTTAGGCATACGGAGTTCATTCCATG
* *
16130026 TCTAAGCCCCAGCCGGATCAAGGGTTGTGGTAGCAGGACCGGCAGTGGGATCAACAGCATGCAGA
128 TCTAAGCCCCAGCCGGATCAAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGACAGCATGCAGA
*
16130091 GGGGGATCGAGCTGATCCCTGACTTGTGCATTATGCCTCTTCGATCGACCTCTCCGATAGGTTGA
193 GGGGGA-CGAGCTGATCCCT-ACTTG-GCATTATGCCTCTTCGAT-G-CCTCTCCGATAGGCTGA
* * * *
16130156 GCGCCCGTACGCTCATTTCATGGGTTGACGTAGGCATATGGAGTTCATCCCCAGTCTAAGCATAC
253 GCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * *
16130221 AGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGTAACACGT
318 GGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCAGTAGCACGC
* * * *
16130286 AAGCGGGATCAAGCCAATCCCTGGCTTTCGCATTCTGCCTCTTCGTTCGGTTGAGTGCCCGTATG
383 AAG-GGGA-CAAGCCAATCCCTGACTTTCGCATTCTACCTCTCCGATCGGTTGAGTGCCCG-ATG
* * * *
16130351 CCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAG
445 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-CCGGACCGAG
* *
16130416 GGTTGTGGCAGCGGGATTGGCAACATGTAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATTAT
509 GGTTGTGGCAGCGGGATTGGCAGCAAGTAGAGGGGGACCAGGC-GATCCCCAGCTTGCGCATTAT
* * * * * * * * * * *
16130481 GCCTCTCCGACTAGTTCAACGCCCGCACGCTCATTTCGTGGGTTAACTCAGGCGTACGGGGTTCA
573 GCCTCTTCGACTGGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCA
* * **
16130546 TTCCTAGTCTAAGATCAGACTAGG-CCGAGGGTTGCAA
638 TTCCTAGTCTAAGATCA-AATCGGACCGAGGGTTGCGG
* * * * *
16130583 TAGCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCG
1 CAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCC-
* * *
16130648 ACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
65 ACTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG--
** * *
16130713 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCA
128 T---C-T--A-AG--C---CCCAG-C-CGGAT-----C--A---AGGGTTGTGGCAGCAGGACCG
* * *
16130778 GCAGTAGGATCGACAGCATGCAG-GGGGCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCT
169 GCAGTGGGATCGACAGCATGCAGAGGGG-GAC-GAGCTGATCCCTA-CTTG-GCATTATGCCTCT
* * *
16130842 TCG--G----T-CG--A--CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGA
230 TCGATGCCTCTCCGATAGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
16130896 GTTCATCCCCAGTCTAAGCATATGGAGTTCAATCCCAATCTATGATCAGACCGGA-CTGAGGGTT
295 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTT
** * ** * * * **
16130960 GCGGTAGCAGGATCAGTAGCACGCACGGGGGACCTGGTCGAT-CCTCGACTTACGCATTCTTTCT
359 GCGACAGCAGGATCAGTAGCACGCA-AGGGGA-CAAGCCAATCCCT-GACTTTCGCATTCTACCT
* ** * * ** * *
16131024 CTCCGGTCGACTGAGCGTCCGCCGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
421 CTCCGATCGGTTGAGTGCCCGATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * *
16131089 TGTCTAAGCCCCACCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGATCGGG
486 TGTCTAAGCCCCACCGGACCGAGGGTTGTGGCAGCGGGATTGGCAGCAAGTAGAGGGGGACCAGG
* * * * * * *
16131154 CCAATCCCCGGCTTACGCATTATGCCTCTTCGACTGGGTCAGTGTCCGCACACTT-GTTTCGTGG
551 -CGATCCCCAGCTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCCGCAC-GTTCGTTTCGTGG
* * * * ** *
16131218 GTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTGTGG
614 GTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAAATCGGACCGAGGGTTGCGG
* * * * * * * *
16131279 CAGGAGGATCGACAGCACGTAGGGGGCACCGGGCCGATCCCCGACTTGCTCATTCTGCC-CTCCG
1 CAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCA
* ** *
16131343 GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTC
66 CT-GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
16131408 TAAGC
130 TAAGC
16131413 ATACGGAGTT
Statistics
Matches: 1245, Mismatches: 210, Indels: 111
0.80 0.13 0.07
Matches are distributed among these distances:
671 49 0.04
672 126 0.10
673 2 0.00
675 1 0.00
677 1 0.00
678 2 0.00
679 4 0.00
680 1 0.00
681 2 0.00
683 2 0.00
684 2 0.00
685 133 0.11
686 117 0.09
687 242 0.19
688 4 0.00
689 1 0.00
690 2 0.00
691 1 0.00
693 2 0.00
694 2 0.00
695 60 0.05
696 185 0.15
697 58 0.05
698 152 0.12
699 6 0.00
700 2 0.00
701 3 0.00
702 2 0.00
703 1 0.00
706 1 0.00
708 2 0.00
710 6 0.00
711 71 0.06
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (674 bp):
CAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCA
CTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGCCGGATCAAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGACAGCATGCAGAGGG
GGACGAGCTGATCCCTACTTGGCATTATGCCTCTTCGATGCCTCTCCGATAGGCTGAGCACCCGT
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCAGTAGCACGCAAGGGGAC
AAGCCAATCCCTGACTTTCGCATTCTACCTCTCCGATCGGTTGAGTGCCCGATGCCCGTTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGTGGCAGC
GGGATTGGCAGCAAGTAGAGGGGGACCAGGCGATCCCCAGCTTGCGCATTATGCCTCTTCGACTG
GCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAG
ATCAAATCGGACCGAGGGTTGCGG
Found at i:16130726 original size:26 final size:26
Alignment explanation
Indices: 16130690--16130742 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16130680 GTTGGCTTAG
16130690 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16130716 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16130742 G
1 G
16130743 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16130926 original size:197 final size:196
Alignment explanation
Indices: 16130587--16131097 Score: 525
Period size: 197 Copynumber: 2.7 Consensus size: 196
16130577 TTGCAATAGC
* *
16130587 AGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGACCG
1 AGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCTAGACTTACGCATTATACCTCTCCGACCG
* ** * * *
16130652 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATCCCATGTCTAAG
* *
16130717 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAG
131 CATACAGAGTTCAATCCCAATCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAG
16130782 T
196 T
* * *
16130783 AGGATCGACAGCATGCAGGGGGCGA-CTGGG-CTGATCCTTAG-CTTGCGCATTATGCCTCTTCG
1 AGGATCGACAGCATGCAGGGGG-GATC-GGGTC-GATCC-TAGACTTACGCATTATACCTCTCCG
** *
16130845 GTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCA-GT
62 ACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCAT-CCCATGT
** * * *
16130909 CTAAGCATATGGAGTTCAATCCCAATCTATGATCAGACCGGACTGAGGGTTGCGGTAGCAGG---
126 CTAAGCATACAGAGTTCAATCCCAATCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACC
*
16130971 ATCAGT
191 AGCAGT
* * * * ** **
16130977 A-G--C-AC-GCA--C--GGGGGACCTGGTCGATCCTCGACTTACGCATTCTTTCTCTCCGGTCG
1 AGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCTAGACTTACGCATTATACCTCTCCGACCG
** * * ** *
16131033 ACTGAGCGTCCGC-CGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATCCCATGTCTAAG
16131097 C
131 C
16131098 CCCACCGGAC
Statistics
Matches: 271, Mismatches: 35, Indels: 31
0.80 0.10 0.09
Matches are distributed among these distances:
182 3 0.01
183 46 0.17
184 40 0.15
185 6 0.02
187 1 0.00
189 3 0.01
190 2 0.01
191 1 0.00
193 1 0.00
194 6 0.02
196 24 0.09
197 133 0.49
198 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
AGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCTAGACTTACGCATTATACCTCTCCGACCG
ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATCCCATGTCTAAG
CATACAGAGTTCAATCCCAATCTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAG
T
Found at i:16130932 original size:26 final size:26
Alignment explanation
Indices: 16130884--16130937 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16130874 TGGGTTGACT
*
16130884 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
*
16130910 TAAGCATATGGAGTTCAAT-CCCAATC
1 TAAGCATACGGAGTTC-ATCCCCAATC
16130936 TA
1 TA
16130938 TGATCAGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:16131201 original size:157 final size:156
Alignment explanation
Indices: 16131000--16131412 Score: 411
Period size: 157 Copynumber: 2.6 Consensus size: 156
16130990 GACCTGGTCG
* * * * * * *
16131000 ATCCTCGACTTACGCATTCTTTCTCTCCGGTCGACTGAGCGTCCGC-CGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTACGCATT-ATGCCCTCCGCTCGGCTCAGCGTCCGCACGCTCGTTTCGTGGGTTG
* * *
16131064 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCGGACCGAGGGTTGTGGCAGCAGGA-
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACACCAGACCGAGGGTTGTGGCAGCAGGAT
* * *
16131128 CTGGCAGCACGTAGAGGGGGATCGGGCCA
130 C-GACAGCACGTAG-GGGGCACCGGGCCA
* * * * * *
16131157 ATCCCCGGCTTACGCATTATGCCTCTTCGACT-GGGTCAGTGTCCGCACACTTGTTTCGTGGGTT
1 ATCCCCGACTTACGCATTATGCC-CTCCG-CTCGGCTCAGCGTCCGCACGCTCGTTTCGTGGGTT
* * * * * * *
16131221 GACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCATACCGAGGGTTGTGGCAGGAG
64 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCACACCAGACCGAGGGTTGTGGCAGCAG
*
16131285 GATCGACAGCACGTAGGGGGCACCGGGCCG
127 GATCGACAGCACGTAGGGGGCACCGGGCCA
* * * * * ** *
16131315 ATCCCCGACTTGCTCATTCTGCCCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
1 ATCCCCGACTTACGCATTATGCCCTCCGCTCGGCTCAGCGTCCGCACGCTCGTTTCGTGGGTTGG
*
16131380 CTTAGGCATACTGAGTTCATTCCATGTCTAAGC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16131413 ATACGGAGTT
Statistics
Matches: 203, Mismatches: 45, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
156 6 0.03
157 84 0.41
158 73 0.36
159 39 0.19
160 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.25
Consensus pattern (156 bp):
ATCCCCGACTTACGCATTATGCCCTCCGCTCGGCTCAGCGTCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACACCAGACCGAGGGTTGTGGCAGCAGGATC
GACAGCACGTAGGGGGCACCGGGCCA
Found at i:16131272 original size:696 final size:697
Alignment explanation
Indices: 16130153--16131439 Score: 1682
Period size: 696 Copynumber: 1.8 Consensus size: 697
16130143 TCCGATAGGT
* * * *
16130153 TGAGCGCCCGTACGCTCATTTCATGGGTTGACGTAGGCATATGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCATGGGTTGACGTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * *
16130218 TACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGTAACA
66 TACAGAGTTCAATCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAGTAACA
* * * * * * ** *
16130283 CGTAAGCGGGATCAAGCCAATCCCTGGCTTTCGCATTCTGCCTCTTCGTTCGGTTGAGTGCCCGT
131 CGCAAGCGGGACCAAGCCAATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGT
* * * *
16130348 ATGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACC
196 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * * ** *
16130413 AAGGGTTGTGGCAGCGGGATTGGCAACATGTAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCAT
261 AAGGGTTGTGGCAGCAGGACTGGCAACACGTAGAGGGGGACCAGGCCAATCCCCAGCTTACGCAT
* * * *
16130478 TATGCCTCTCCGACTAGTTCAACGCCCGCACGCTCATTTCGTGGGTTAACTCAGGCGTACGGGGT
326 TATGCCTCTCCGACTAGGTCAACGCCCGCACACTCATTTCGTGGGTTAACTCAGGCATACGGAGT
* * * * *
16130543 TCATTCCTAGTCTAAGATCAGACTAGGCCGAGGGTTGCAATAGCAGGATCGACAGCATGCAGGGG
391 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGG
* * * * **
16130608 GGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCTCGT
456 GCACCGGGCCGATCCCCGACTTACGCATTCTACC-CTCCGACCGGCTGAGCACCCGCACGCTCGT
* *
16130673 TTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
520 TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAAT
16130738 CTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGG
585 CTAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGG
16130803 GGCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGTCGAC
650 GGCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGTCGAC
* * *
16130851 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCATGGGTTGACGTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
** * ** *
16130916 TATGGAGTTCAATCCCAATCTATGATCAGACCGGA-CTGAGGGTTGCGGTAGCAGGATCAGTAGC
66 TACAGAGTTCAATCCCAATCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGATCAGTAAC
* * ** * * ** *
16130980 ACGCACGGGGGACCTGGTCGAT-CCTCGACTTACGCATTCTTTCTCTCCGGTCGACTGAGCGTCC
130 ACGCAAGCGGGACCAAGCCAATCCCT-GACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
* *
16131044 G-CCGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-CCGGA
194 GTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * *
16131107 CCGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGATCGGGCCAATCCCCGGCTTACGC
259 CCAAGGGTTGTGGCAGCAGGACTGGCAACACGTAGAGGGGGACCAGGCCAATCCCCAGCTTACGC
* * ** * ** * * * *
16131172 ATTATGCCTCTTCGACTGGGTCAGTGTCCGCACACTTGTTTCGTGGGTTGACTTATGCATATGGA
324 ATTATGCCTCTCCGACTAGGTCAACGCCCGCACACTCATTTCGTGGGTTAACTCAGGCATACGGA
* *** * *
16131237 GTTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTGTGGCAGGAGGATCGACAGCACGTAGG
389 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGG
* * * **
16131302 GGGCACCGGGCCGATCCCCGACTTGCTCATTCTGCCCTCCGGTCGGCTGAGCACCCGCACGCTCG
454 GGGCACCGGGCCGATCCCCGACTTACGCATTCTACCCTCCGACCGGCTGAGCACCCGCACGCTCG
* *
16131367 TTTCATGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAA
519 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAA
16131432 TCTAAGAT
584 TCTAAGAT
16131440 TTTGAGCCAT
Statistics
Matches: 494, Mismatches: 93, Indels: 7
0.83 0.16 0.01
Matches are distributed among these distances:
695 94 0.19
696 191 0.39
697 56 0.11
698 153 0.31
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (697 bp):
TGAGCACCCGCACGCTCATTTCATGGGTTGACGTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCAATCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAGTAACA
CGCAAGCGGGACCAAGCCAATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGT
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
AAGGGTTGTGGCAGCAGGACTGGCAACACGTAGAGGGGGACCAGGCCAATCCCCAGCTTACGCAT
TATGCCTCTCCGACTAGGTCAACGCCCGCACACTCATTTCGTGGGTTAACTCAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGG
GCACCGGGCCGATCCCCGACTTACGCATTCTACCCTCCGACCGGCTGAGCACCCGCACGCTCGTT
TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATC
TAAGATCAAACCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGGG
GCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGTCGAC
Found at i:16131435 original size:26 final size:26
Alignment explanation
Indices: 16131385--16131437 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16131375 GTTGGCTTAG
* *
16131385 GCATACTGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16131411 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16131437 G
1 G
16131438 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16131527 original size:11 final size:11
Alignment explanation
Indices: 16131513--16131550 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
16131503 GCACCATCGT
*
16131513 CGGAGCATCAC
1 CGGAGCACCAC
16131524 CGGAGCACCAC
1 CGGAGCACCAC
16131535 CGGAGCACCAC
1 CGGAGCACCAC
16131546 CGGAG
1 CGGAG
16131551 AGCCTAACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.39, G:0.32, T:0.03
Consensus pattern (11 bp):
CGGAGCACCAC
Found at i:16132160 original size:26 final size:26
Alignment explanation
Indices: 16132130--16132182 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16132120 GTTGACTTAG
16132130 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGTAGTTCATCCCCAGTCTAA
* *
16132156 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATAAGTAGTTCATCCCCAGTCTAA
16132182 G
1 G
16132183 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGTAGTTCATCCCCAGTCTAA
Found at i:16133250 original size:159 final size:158
Alignment explanation
Indices: 16132807--16134131 Score: 641
Period size: 159 Copynumber: 8.1 Consensus size: 158
16132797 AAGCATACAA
* * * ** *
16132807 AGTTCATTCCCAGTCTAAGATCGGATCGGACCACGGGTTGCGACAGCAGGATCGGTAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCG-CAGCAGGATCGACAGCACGCAG
* * * * * **
16132872 GGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGTTTCGCTGAGCGCCTGCACGC
65 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACACGC
* * *
16132937 CCGTTTCATGGGTTGGCTTAGGCATAGGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
16132966 AGTTCATT-CCATGTCTAAGA-TGCAACCGGACCGAGGGTTGTGGCAG-TGGAACGGACAGCACG
1 AGTTCATTCCCA-GTCTAAGATTG-GACCGGACCAAGGGTTG-CGCAGCAGGATC-GACAGCACG
* * * *
16133028 CAGAGGGGGACCAGGGCCTATCCCCGGCTTGCGCATTATGCCTCTCCGATTGGCTCAGCGCCCAC
62 CAGAGGGGGACC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCAC
* *
16133093 ACGCTCATTTCGTGGGTTGAG-TTAGGCTTACGG
126 ACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGG
* *
16133126 AGTTAATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC-GCAGCAGGATCGACAGCACGCAG
* *
16133191 AGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGCCCACACGC
65 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACACGC
16133256 TCGTTTCGTGGGTTGGCTTAGGCATACGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * * ** * * *
16133285 AGTTCATT-CCATGTCTATGCATCCGGAGTTCATTCCCAGTCTAA-GATCAACCGGATCGAGGGT
1 AGTTCATTCCCA-GTCTAAG-AT--TG-G---A---CCGGACCAAGGGT--TGCGCAGC-A-GGA
* * *
16133348 TACAGCAGCAGGATCGACAGCATGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTTCCT
51 T-C-G-A-CA-G--C-AC-GCA-G-A-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCT
* *** * *** * *
16133413 CTTCGGCCGACTGAGCGCCCGTGCGCTCGTTTCGTGGGTTGGCTTAGGTATACAG
104 CTCCGATTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* **** * * *
16133468 AGTTGATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAACGAAT
1 AGTTCATTCCCA-GTCTAAGATTGGA-CCGGACCAAGGG-T-T-GC-GCA-G--C----A-GGAT
* * * * * * * ** *
16133531 CGACAGCACGTAGAAGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCT-CTAGCCGGTT
52 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-TTGGCT
* * * * * *
16133595 GAGCACCCGCACGCTCATTTTGAGGGTTGACTTAGGCATACGG
116 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* ** *
16133638 AGTTCA-TCACCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCA
1 AGTTCATTC-CCAGTCTAAGATTGGACCGGACCAAGGGTTGC-GCAGCAGGATCGACAGCACGCA
** * * * * * ** * *
16133702 G-GGGGGACTAGGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCACCCGCACG
64 GAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACACG
* *
16133766 -TCCGTTTCGTGGGTTGGCTTGGGGATA-GG
129 CT-CGTTTCGTGGGTTGGCTTAGGCATACGG
* **** * * * * *
16133795 AAGTTGATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACAGCACG
1 -AGTTCATTCCCA-GTCTAAGATTGGA-CCGGACCAAGGGTTG-CGCAGCAGGATCGACAGCACG
* * * * * * * * * * * * * **
16133858 TAGAGGAGGATCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTA
62 CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACA
* * * * *
16133923 CGCTTGTTTCATGGGTTGACTTATGCATACGA
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * ** * * * *
16133955 AGTTCATTCTCAGTCTAAGATCGAACTGGACTGAGGGTTGCAGTAGCAGGATAGCCAGCACACAG
1 AGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGC-GCAGCAGGATCGACAGCACGCAG
** ** * * * * * * *
16134020 -GGGGGATTGGGCCGATCCCCATCTTGCACTTTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGC
65 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACACGC
* * *
16134084 TCGTTTCATGGGTTGACTTAGGGATACGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGG
*
16134113 AGTTTATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
16134132 GATACGGAGT
Statistics
Matches: 899, Mismatches: 201, Indels: 133
0.73 0.16 0.11
Matches are distributed among these distances:
157 9 0.01
158 218 0.24
159 266 0.30
160 132 0.15
161 9 0.01
162 1 0.00
163 1 0.00
164 1 0.00
166 2 0.00
167 5 0.01
168 3 0.00
169 12 0.01
170 96 0.11
171 7 0.01
172 2 0.00
173 7 0.01
174 4 0.00
175 6 0.01
176 3 0.00
177 1 0.00
178 3 0.00
179 4 0.00
180 4 0.00
181 2 0.00
182 4 0.00
183 97 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGCAGCAGGATCGACAGCACGCAGA
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATTGGCTGAGCGCCCACACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:16133442 original size:183 final size:185
Alignment explanation
Indices: 16133123--16133484 Score: 512
Period size: 183 Copynumber: 2.0 Consensus size: 185
16133113 GTTAGGCTTA
** *
16133123 CGGAGTTAATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACG
1 CGGAGTTAATTCCCAGTCTAAGATTCAACCGGACCAAGGGTTACAGCAGCAAGATCGACAGCACG
* * ** *
16133188 CAGAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGCCCACA
66 CAGAGAGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCCCACA
*
16133253 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCATC
131 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCATC
* * * * *
16133308 CGGAGTTCATTCCCAGTCTAAGA-TCAACCGGATCGAGGGTTACAGCAGCAGGATCGACAGCATG
1 CGGAGTTAATTCCCAGTCTAAGATTCAACCGGACCAAGGGTTACAGCAGCAAGATCGACAGCACG
* * * ***
16133372 CAG-GGGGGACCGAGCCGATCCCCGGCTTGCACATTCTTCCTCTTCGGCCGACTGAGCGCCCGTG
66 CAGAGAGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCCCACA
* *
16133436 CGCTCGTTTCGTGGGTTGGCTTAGGTATACAGAGTTGATTCCATGTCTA
131 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
16133485 AGCCCCAGTC
Statistics
Matches: 155, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
183 96 0.62
184 37 0.24
185 22 0.14
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (185 bp):
CGGAGTTAATTCCCAGTCTAAGATTCAACCGGACCAAGGGTTACAGCAGCAAGATCGACAGCACG
CAGAGAGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCCCACA
CGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCATC
Found at i:16133834 original size:158 final size:157
Alignment explanation
Indices: 16133665--16134131 Score: 471
Period size: 158 Copynumber: 2.9 Consensus size: 157
16133655 AGATTGGATC
* *
16133665 GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGACTAGGCTGATCCTCGGCTTAC
1 GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGA-TGGGCTGATCCTCGACTTAC
** * * * *
16133730 GCATTCTGCCTC-TCTGACCGGCTGAGCACCCGCACG-TCCGTTTCGTGGGTTGGCTTGGGGATA
65 GCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGGATA
* * *
16133793 GGAAGTTGATTCCATGTCTAAG-CCCCAGT
128 GGAAGTTCATTCCATGTCTAAGACCCAACT
** * * * *
16133822 CGGA-TCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGAGGATCGGGCTGATCCTCGACT
1 -GGACT-GAGGGTTGCAGTAGCAGGATCGACAGCACGCAG-GGGGGAT-GGGCTGATCCTCGACT
* * * * * *
16133886 TACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTTGTTTCATGGGTTGACTTATGCAT
62 TACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGAT
* * *
16133951 ACGAAGTTCATTCTCA-GTCTAAGATCGAACT
127 AGGAAGTTCATTC-CATGTCTAAGACCCAACT
* * * * * *
16133982 GGACTGAGGGTTGCAGTAGCAGGATAGCCAGCACACAGGGGGGATTGGGCCGATCC-CCATCTTG
1 GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGA-TGGGCTGATCCTCGA-CTTA
* *
16134046 CACTTTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATAC
64 CGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATA-
*
16134111 GG-AGTTTATTCCATGTCTAAG
128 GGAAGTTCATTCCATGTCTAAG
16134132 GATACGGAGT
Statistics
Matches: 249, Mismatches: 48, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 120 0.48
159 115 0.46
160 9 0.04
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGATGGGCTGATCCTCGACTTACG
CATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATAGGA
AGTTCATTCCATGTCTAAGACCCAACT
Found at i:16134005 original size:317 final size:320
Alignment explanation
Indices: 16133300--16134131 Score: 931
Period size: 317 Copynumber: 2.6 Consensus size: 320
16133290 ATTCCATGTC
* * * *
16133300 TATGCATCCGGAGTTCATTCCCAGTCTAAGATC-AACCGGA-TCGAGGGTTACAGCAGCAGGATC
1 TATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACT-GAGGGTTGCAGTAGCAGGATC
* * * *
16133363 GACAGCATGCAGGGGGGAC-CGAGCCGATCCCCGGCTTGCACATTCTTCCTCTTCGGCCGACTGA
65 GACAGCACGCAGGGGGGACTAG-GCCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGA
** * *
16133427 GCGCCCGTGCGCTCGTTTCGTGGGTTGGCTTAGGTATA-CAGAGTTGATTCCATGTCTAAGCCCC
129 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATAGGA-AGTTGATTCCATGTCTAAGCCCC
16133491 AGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAACGAATCGACAGCACGTAGAAGGGGACCGGG
193 AGTCGGACCGAGGGTTGTGGCAGC--GA-CGG-AAC--A-CGACAGCACGTAGAAGGGGACCGGG
* ** * * *
16133556 CTGATCCCCGGCTTGTGCATTATGCCTCTCTAGCCGGTTGAGCACCCGCACGCTCATTTTGAGGG
251 CTGATCCCCGACTTACGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCT-ATTTTCAGGG
16133621 TTGACT
315 TTGACT
* * *
16133627 TAGGCATACGGAGTTCA-TCACCAGTCTAAGATTGGA-TCGGACTGAGGGTTGCAGTAGCAGGAT
1 TATGCATACGGAGTTCATTC-CCAGTCTAAGATCGAACT-GGACTGAGGGTTGCAGTAGCAGGAT
* * * * *
16133690 CGACAGCACGCAGGGGGGACTAGGCTGATCCTCGGCTTACGCATTCTGCCTC-TCTGACCGGCTG
64 CGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCACATTCTGCCTCTTC-GGCCGGCTG
* *
16133754 AGCACCCGCACG-TCCGTTTCGTGGGTTGGCTTGGGGATAGGAAGTTGATTCCATGTCTAAGCCC
128 AGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGGATAGGAAGTTGATTCCATGTCTAAGCCC
* *
16133818 CAGTCGGATCGAGGGTTGTGGCAGC-A-GG-AC-CGACAGCACGTAG-AGGAGGATCGGGCTGAT
192 CAGTCGGACCGAGGGTTGTGGCAGCGACGGAACACGACAGCACGTAGAAGG-GGACCGGGCTGAT
* * * * *
16133878 CCTCGACTTACGCATTATGCCTCT-TCGGTCGGCTCAGCGCCCGTACGCT-TGTTTCATGGGTTG
256 CCCCGACTTACGCATTATGCCTCTCT-AGCCGGCTCAGCACCCGCACGCTAT-TTTCA-GGGTTG
16133941 ACT
318 ACT
* * *
16133944 TATGCATACGAAGTTCATTCTCAGTCTAAGATCGAACTGGACTGAGGGTTGCAGTAGCAGGATAG
1 TATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCAGTAGCAGGATCG
* * * * ** * *
16134009 CCAGCACACAGGGGGGATTGGGCCGATCCCCATCTTGCACTTTCTGCCTCTTCGGTCGGCTGAGC
66 ACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGC
* * *
16134074 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGGATACGG-AGTTTATTCCATGTCTAAG
131 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATA-GGAAGTTGATTCCATGTCTAAG
16134132 GATACGGAGT
Statistics
Matches: 429, Mismatches: 59, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
315 1 0.00
316 8 0.02
317 222 0.52
318 8 0.02
321 2 0.00
323 2 0.00
325 1 0.00
326 2 0.00
327 30 0.07
328 150 0.35
329 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (320 bp):
TATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCAGTAGCAGGATCG
ACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATAGGAAGTTGATTCCATGTCTAAGCCCCAGT
CGGACCGAGGGTTGTGGCAGCGACGGAACACGACAGCACGTAGAAGGGGACCGGGCTGATCCCCG
ACTTACGCATTATGCCTCTCTAGCCGGCTCAGCACCCGCACGCTATTTTCAGGGTTGACT
Found at i:16134134 original size:26 final size:26
Alignment explanation
Indices: 16134105--16134157 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16134095 GTTGACTTAG
*
16134105 GGATACGGAGTTTATT-CCATGTCTAA
1 GGATACGGAGTTCATTCCCA-GTCTAA
16134131 GGATACGGAGTTCATTCCCAGTCTAA
1 GGATACGGAGTTCATTCCCAGTCTAA
16134157 G
1 G
16134158 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GGATACGGAGTTCATTCCCAGTCTAA
Found at i:16134877 original size:26 final size:25
Alignment explanation
Indices: 16134826--16134877 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
16134816 GTTAACTTAG
* * *
16134826 GCATACGGTGTTCATCCCCATCTAA
1 GCATACAGAGTTCATCCCCAACTAA
*
16134851 GCATACAGAGTTCATTCCCAACGTAA
1 GCATACAGAGTTCATCCCCAAC-TAA
16134877 G
1 G
16134878 ATCAGACCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAACTAA
Found at i:16135348 original size:157 final size:156
Alignment explanation
Indices: 16134851--16135348 Score: 526
Period size: 157 Copynumber: 3.2 Consensus size: 156
16134841 CCCCATCTAA
* * ** * *
16134851 GCATACAGAGTTCATTCCCA-ACGTAAGATCAGACCGAAC-GAGGGTTGCGATAGCAGAATCGAC
1 GCATACAGAGTTCATTCCCAGTC-TAAGATCAGACAG-ACTGAGGGTTGCGGCAACAGGATCGAC
* * * *
16134914 AGCACGCAGGGGGGATTGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
*
16134979 CCGCACGCCCGTTTCATGGGTTGGCCTAG
129 CCGCACG-CCGTTTCATGGGTTGGCTTAG
** *** * * * * **
16135008 GCATAGGGAGTTCATT-CCATGTCTAACCCCAGCCAGACTGAGGGTTGTGGCAGA-GGGACCGGT
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACAGACTGAGGGTTGCGGCA-ACAGGATCGAC
* * * *
16135071 AGCACGCAGAGGGGGA-CTGGGCCGATCACC-GGCTTGCACATTATGCCTCTTCGATC-GCTCAG
64 AGCACGCAG-GGGGGATC-GGGCCGATC-CCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
* * *
16135133 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGC-CGTTTCATGGGTTGGCTTAG
*
16135165 GCATAC-GAAGTTCATTCACAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAACAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGA-CAGACTGAGGGTTGCGGCAACAGGATCGAC
* * *
16135229 AGCACACAGGGGGGATCGGGCCGATCCCTGACCTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* *
16135294 CCGTACGCCGTTTCATGGGATGGCTTAG
129 CCGCACGCCGTTTCATGGGTTGGCTTAG
16135322 GCATACAGAGTTCATTCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
16135349 TTTTTGAGCC
Statistics
Matches: 272, Mismatches: 53, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 9 0.03
157 175 0.64
158 86 0.32
159 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGACTGAGGGTTGCGGCAACAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCCGTTTCATGGGTTGGCTTAG
Found at i:16136428 original size:159 final size:154
Alignment explanation
Indices: 16136182--16136543 Score: 390
Period size: 159 Copynumber: 2.3 Consensus size: 154
16136172 CCCGCATGCC
* * *
16136182 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAGACCGAGGG
* * ** * * * * *
16136247 TTGTGGCAGTGGTACTGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCGCATTATGC
66 TTGCGACAGCAGCACTGACAGCACACAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATAC
*
16136312 CTCTTCAG-TCGGCTCAACGCCCGTACGCT
130 CTC-TCAGATCGACT-AA-G--CGTACGCT
* *
16136341 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ACCAGACCGAG
* * * * *
16136404 GGTTGCGATAGCAGCA-TCGACAGCACACAGGGGGGACCGAGCCGGTCCCTGGCTTGCGCATTCT
64 GGTTGCGACAGCAGCACT-GACAGCACACAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTAT
* * *
16136468 ACCTCTCTGATCGACTGAGCTTACGCT
128 ACCTCTCAGATCGACTAAGCGTACGCT
* *
16136495 CGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16136544 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
153 3 0.02
154 47 0.27
155 1 0.01
156 1 0.01
157 4 0.02
158 41 0.24
159 71 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (154 bp):
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAGACCGAGGG
TTGCGACAGCAGCACTGACAGCACACAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATACC
TCTCAGATCGACTAAGCGTACGCT
Found at i:16136544 original size:26 final size:26
Alignment explanation
Indices: 16136515--16136567 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16136505 GTTGGCTTAG
16136515 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16136541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16136567 G
1 G
16136568 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16137201 original size:183 final size:184
Alignment explanation
Indices: 16136808--16137201 Score: 519
Period size: 183 Copynumber: 2.1 Consensus size: 184
16136798 GGATCGGGCT
* * * *
16136808 GATCCTCAGCTTGCGCATTATGCCTCTCCAGCTGGCAGAGCGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCAAAGCGCCCACACGCTCGTTTCGTGGGTT
* * * *
16136873 GACTTAGGCATACGGAGTTCGATCCCTACTCTAAGCATACGAATTCATTACCAGTCTAGGATCGG
66 GACTTAGGCATACGGAGTTCGATCCCCACTCTAAGCAAACGAATTCATTACCACTCTAAGATCGG
* * * *
16136938 ACCAGATCGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGGGGGGATCAGGCC
131 ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCAGGCC
* * * * *
16136992 GTTCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCAAAGCGTCCACACGCTCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCAAAGCGCCCACACGCTCGTTTCGTGGGTT
*
16137057 GACTTAGGCATATGGAGTTC-ATCCCC-CATCTAAGCAAAC-AAGTTCATT-CCTACTCTAAGAT
66 GACTTAGGCATACGGAGTTCGATCCCCAC-TCTAAGCAAACGAA-TTCATTACC-ACTCTAAGAT
* *
16137118 CGGACCGGGCCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCCA-GCC
128 CGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGA-CCAGGCC
* *
16137175 GATCCCCAACTTGCGCATTCTGCCTCT
1 GATCCCCAGCTTGCGCATTATGCCTCT
16137202 TCGGTCGACT
Statistics
Matches: 181, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
182 5 0.03
183 99 0.55
184 77 0.43
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
GATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCAAAGCGCCCACACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCGATCCCCACTCTAAGCAAACGAATTCATTACCACTCTAAGATCGG
ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCAGGCC
Found at i:16137240 original size:183 final size:183
Alignment explanation
Indices: 16136808--16137251 Score: 504
Period size: 183 Copynumber: 2.4 Consensus size: 183
16136798 GGATCGGGCT
* * * * * *
16136808 GATCCTCAGCTTGCGCATTATGCCTCTCCAGCTGGCAGAGCGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCAACTTGCACATTATGCCTCTCCGGCTGACAGAGCG-CCGCACGCTCGTTTCGTGGGTT
* * * *
16136873 GACTTAGGCATACGGAGTTCGATCCCTACTCTAAGCATACGAATTCATTACCAGTCTAGGATCGG
65 GACTTAGGCATACGGAGTTCGATCCCCACTCTAAGCAAACGAATTCATTACCACTCTAAGATCGG
* * * *
16136938 ACCAGATCGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGGGGGGATCAGGCC
130 ACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCAGGCC
* ** * * *
16136992 GTTCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCAAAGCGTCCACACGCTCGTTTCGTGGGTT
1 GATCCCCAACTTGCACATTATGCCTCTCCGGCTGACAGAGCG-CCGCACGCTCGTTTCGTGGGTT
*
16137057 GACTTAGGCATATGGAGTTC-ATCCCC-CATCTAAGCAAAC-AAGTTCATT-CCTACTCTAAGAT
65 GACTTAGGCATACGGAGTTCGATCCCCAC-TCTAAGCAAACGAA-TTCATTACC-ACTCTAAGAT
* *
16137118 CGGACCGGGCCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCCA-GCC
127 CGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGA-CCAGGCC
* * * * * *
16137175 GATCCCCAACTTGCGCATTCTGCCTCTTCGG-TCGACTGAGCGCCTGCACGCCCGTTTCATGGGT
1 GATCCCCAACTTGCACATTATGCCTCTCCGGCT-GACAGAGCGCC-GCACGCTCGTTTCGTGGGT
*
16137239 TGGCTTAGGCATA
64 TGACTTAGGCATA
16137252 GAGAGTTTAT
Statistics
Matches: 221, Mismatches: 33, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
182 8 0.04
183 136 0.62
184 77 0.35
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (183 bp):
GATCCCCAACTTGCACATTATGCCTCTCCGGCTGACAGAGCGCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCGATCCCCACTCTAAGCAAACGAATTCATTACCACTCTAAGATCGGA
CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAACACACAGGGGGGACCAGGCC
Found at i:16138322 original size:26 final size:26
Alignment explanation
Indices: 16138292--16138344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16138282 GTTGACTTAG
16138292 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
** *
16138318 GCATATTGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
16138344 G
1 G
16138345 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16138823 original size:26 final size:26
Alignment explanation
Indices: 16138793--16138844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16138783 GTTGGCTTAG
16138793 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
16138819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16138845 TATCAGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16139665 original size:157 final size:157
Alignment explanation
Indices: 16139191--16139684 Score: 430
Period size: 157 Copynumber: 3.1 Consensus size: 157
16139181 CTACGTATAT
* * * * *
16139191 GGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATTGGCAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGCG-CAGCAGGATCGACAGCACG
* * * * * * *
16139255 CA-GGGGGATCGGGCCGATCCCTGGCTTACGAATTCTGCCTTTCTGGCTGGA-TGAGCACCCACA
64 CAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTTT-TCGATCGACTGAGCACCCGCA
* * *
16139318 CGCCCATTTCATGGGTTGGCTTAGGCATAG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
** * ** * * *
16139348 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGC-GAGACCGACAACACG
1 GGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTG-CGCAGCAG-GATCGACAGCACG
* * * * * * * * * * *
16139412 TAGAGGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCATCTTC-AGCCTG-CTCAGCGCCCG
64 CAG-GGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTTTTCGA-TC-GACTGAGCACCCG
* * *
16139475 TACACTCGTTTCATGGGTTGACTTATGG-ATAC
126 CACGCTCGTTTCATGGGTTGGCTTA-GGCATAC
* * * *
16139507 GGACTTTATTCC-TAGTCTAAGATCGAACCAGA-CGAGGGTTGCAGCAGCAGGATCAATAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCGAACCAGACCGAGGGTTGC-GCAGCAGGATCGACAGCACG
*
16139570 CAGGGGGGATCGGGTTGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGACTGAGCACCCGCAC
64 CAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGACTGAGCACCCGCAC
* *
16139635 GCTCGTTTCGTGGGTTGGCTTAGGCGTAC
129 GCTCGTTTCATGGGTTGGCTTAGGCATAC
16139664 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
16139685 CATATGGAGT
Statistics
Matches: 253, Mismatches: 68, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
156 7 0.03
157 129 0.51
158 30 0.12
159 85 0.34
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGCAGCAGGATCGACAGCACGCA
GGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGACTGAGCACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:16140164 original size:26 final size:26
Alignment explanation
Indices: 16140112--16140169 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
16140102 CTCTTTCTAA
* * *
16140112 AAAAATTTTAAAAAATCCCGAACAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
* *
16140138 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCACGAAAAAT
16140164 AGAAAA
1 A-AAAA
16140170 CGGGTCGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCACGAAAAAT
Found at i:16147942 original size:26 final size:26
Alignment explanation
Indices: 16147906--16147957 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16147896 TGACTTAGGC
16147906 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
* *
16147932 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
16147958 TTAGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:16148236 original size:159 final size:159
Alignment explanation
Indices: 16148070--16148433 Score: 376
Period size: 159 Copynumber: 2.3 Consensus size: 159
16148060 CACACGACTG
* *
16148070 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACT-GAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA-TAGAGGGT
* * *
16148134 TGTGCCAGC-GAGACCGACAGCACGCA-GAGGGGGACCGGGTCGATCCCCGACTTACGCATTATG
65 TGCGCCAGCAG-GACCGACAGCACGCATG-GGGGGACCGGGCCGATCCCCGACTTACGCATTACG
* * *
16148197 CCTCTCCGGCTGGCTCAGCGCCCGAATGCTCA
128 CCTCTCCGGCCGGCTAAGCGCCCGAACGCTCA
* * ** ** **
16148229 TTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTAGATAGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGATAGAGGGT
* * * * ** * * *
16148293 TGCGGCAGCAGGATCGATAGCACGTATGGGGGGATTGGGCCGATCCTCGGCTTACGCATTCCGCC
65 TGCGCCAGCAGGACCGACAGCACGCATGGGGGGACCGGGCCGATCCCCGACTTACGCATTACGCC
* * * *
16148358 TCTCCGGCCGGCTAAGCGTCTGCACGCTCG
130 TCTCCGGCCGGCTAAGCGCCCGAACGCTCA
* * *
16148388 TTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16148434 ATACGAAGCT
Statistics
Matches: 165, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
158 4 0.02
159 156 0.95
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGATAGAGGGTT
GCGCCAGCAGGACCGACAGCACGCATGGGGGGACCGGGCCGATCCCCGACTTACGCATTACGCCT
CTCCGGCCGGCTAAGCGCCCGAACGCTCA
Found at i:16148645 original size:26 final size:26
Alignment explanation
Indices: 16148615--16148667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16148605 GTTGACTTAG
16148615 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16148641 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16148667 G
1 G
16148668 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16149904 original size:159 final size:160
Alignment explanation
Indices: 16149607--16150014 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 160
16149597 TACCACCCGT
* * * *
16149607 TCGATCCCCGGCTTGTGCATCCTGCCTC-TCTAGTCGACTGAGCGCCCGCACGCTCGTTTCATGG
1 TCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAGTCGACTCAGCGCCCGCACGCTCGTTTCATGA
* * *
16149671 GTTGACTTAGGCATAGGGAGTTCACTCCGTGTCTAAGGCCCAGTCGGACCGAGGGTTGTGGCAGC
66 GTTGACTTAGGCATACGGAGTTCACTCCGTGTCTAAGGCCCAGCCGGACCGAGGGTTGCGGCAGC
*
16149736 GAGACCGACAGCACGC-AGAGGGGGATCGGG
131 GAGACCGACAGCACGCAAG-GGGGGACCGGG
* * * *
16149766 -CTGATCCCCGGCTTGTGCATTTTGCCTCTTCGA-TCGGCTCAGTGCCCGCACGCTCGTTTCGTG
1 TC-GATCCCCGGCTTGTGCATTCTGCCTCTTCGAGTCGACTCAGCGCCCGCACGCTCGTTTCATG
* * * **** *
16149829 AGTTGACTTATGCATACGGAGTTCATTGC-TAGTCTAA-GATTGGACCGGATCGAGGGTTGCGGC
65 AGTTGACTTAGGCATACGGAGTTCACTCCGT-GTCTAAGGCCCAG-CCGGACCGAGGGTTGCGGC
* *
16149892 AGC-ATGATCGACAGCACGTAAGGGGGGACCGGG
128 AGCGA-GACCGACAGCACGCAAGGGGGGACCGGG
* * * * * * *
16149925 TCGGTCCCCGACTTGCGCATTCTGCATCTTCGACT-GACTGAGCACCCGTACGCACGCTCGTTTC
1 TCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAGTCGACTCAGC-GCC---CGCACGCTCGTTTC
* *
16149989 ATGGGTTGGCTTAGGCATACGGAGTT
62 ATGAGTTGACTTAGGCATACGGAGTT
16150015 AATTCCATTT
Statistics
Matches: 202, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
158 5 0.02
159 152 0.75
160 9 0.04
163 36 0.18
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (160 bp):
TCGATCCCCGGCTTGTGCATTCTGCCTCTTCGAGTCGACTCAGCGCCCGCACGCTCGTTTCATGA
GTTGACTTAGGCATACGGAGTTCACTCCGTGTCTAAGGCCCAGCCGGACCGAGGGTTGCGGCAGC
GAGACCGACAGCACGCAAGGGGGGACCGGG
Found at i:16152710 original size:26 final size:26
Alignment explanation
Indices: 16152674--16152724 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16152664 GTTGACTTAG
16152674 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16152700 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16152725 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16153008 original size:159 final size:157
Alignment explanation
Indices: 16152765--16153835 Score: 640
Period size: 159 Copynumber: 6.8 Consensus size: 157
16152755 AGGATTGGCG
* * * * * * *
16152765 GCACGCAGGGGGGATCGGGTCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG-C
1 GCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCC
* * * * ** * *
16152829 CTACACACCCGTTTCATGGGTTGGCTTAGTTATAGGGAGTTCATTCCATGTCCAAGCCCCATTCG
66 CGA-ACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-TCG
* * * * *
16152894 GACTGACGGTTGTGGTAGCGGGACCGACA
129 GACTGAGGGTTGTGGCAGCAGGATCGATA
* * * *
16152923 GCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGC
1 GCACGCAG-GGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGC
* * * ****
16152988 CCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATTGGATC
65 CCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCATC
* * ** *
16153052 AGACCGAGGGTTACGGCAGTAGGATCGATA
128 GGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * * *
16153082 GCATGCAGGGGGGATCGGG-CTGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTTGAGCAC
1 GCACGCAGGGGGGATCGGGTC-GATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGC
* * *
16153146 CCGCACACTTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
65 CCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-TCG
*
16153211 GA-TCGAGGGTTGTGGCAGCAGGATCGGTA
129 GACT-GAGGGTTGTGGCAGCAGGATCGATA
* * *
16153240 GCAC-TAGAGGGGGATTGGGTCGATCCCTGACTTGCACATTAAGCCTCTCCGACCGGCTCAGCGC
1 GCACGCAG-GGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGC
* * * * * * ** *
16153304 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCA-GTCTAAGATCAGACC
65 CCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCATC
* * * * * * * *
16153368 AGACCGAGTGTTATGGTAGTAGGATTGGTA
128 GGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * * * * **
16153398 GCACGTA-GGGGGACCGGATTGATCCCTGGCTTGCATATTCTGCCTCTCC-AGCCGACTGAGTAC
1 GCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGA-CCGGCTCAGCGC
* * * * * * *
16153461 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTAG
65 CCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-TCG
* ** **
16153526 GACCGAGGGTTGTGGCAGTGGGA-CTGGCA
129 GACTGAGGGTTGTGGCAGCAGGATC-GATA
* * * * * * * * *
16153555 GCACACAGGGGGGGA-CTAGGCCGATCCCTGGCTTACGCATTTTACCTCTCCGACCGGCTCAGTG
1 GCACGCA-GGGGGGATC-GGGTCGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCG
* ** * * * * * ** *
16153619 CCGGAACACTTGTTTCATGGGTTAACTTAGTCTTATGGGGTTCATTCC-TAGTCTAAG-ATCAGA
64 CCCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCA-T
* * *
16153682 CTGGA-TCGAGGGTTGTGGTAGCAAGATCGACA
127 C-GGACT-GAGGGTTGTGGCAGCAGGATCGATA
* * * * ** * * * ** * * *
16153714 GCACACAGGGGGGGATCGGG-CTGGTCCCCGGCTTGTGCATTCTGCCTTTTCGGTCGACTGAGTG
1 GCACGCA-GGGGGGATCGGGTC-GATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCG
* * * * * *
16153778 CCCGCACGCTCGTTTCATGGGTTGGCTTAGACATATGGAGTTCATTCCATGTCTAAGC
64 CCCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16153836 ATACGGAGTT
Statistics
Matches: 704, Mismatches: 179, Indels: 58
0.75 0.19 0.06
Matches are distributed among these distances:
156 6 0.01
157 122 0.17
158 248 0.35
159 317 0.45
160 11 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCACATTATGCCTCTCCGACCGGCTCAGCGCC
CGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCATCGGA
CTGAGGGTTGTGGCAGCAGGATCGATA
Found at i:16153374 original size:316 final size:315
Alignment explanation
Indices: 16152708--16153835 Score: 1204
Period size: 316 Copynumber: 3.6 Consensus size: 315
16152698 AAGCATATGG
* * * * * *
16152708 AGTTCATTCCCAGTCTATGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATTGGCGGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* * * * * **
16152773 GGGGGATCGGG-TCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCTACACAC
66 GGGGGATCGGGCT-GATCCCTGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACAC
* ** * * *
16152837 CCGTTTCATGGGTTGGCTTAGTTATAGGGAGTTCATTCCATGTCCAAGCCCCATTCGGACTGACG
130 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-GAGG
* * * * * * *
16152902 GTTGTGGTAGCGGGACCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCGCATTATG
194 GTTGTGGCAGCGGGA-CGGCAGCACACAGAGGGGGATTGGGTCGATCCCTGACTTGCGCATTAAG
16152967 CCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
258 CCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
** * * * * *
16153025 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGGCAGTAGGATCGATAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* ** *
16153090 GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTTGAGCACCCGCACACT
66 GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACACC
* *
16153155 TATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGG
131 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGG
* * * *
16153220 TTGTGGCAGCAGGATCGGTAGCAC-TAGAGGGGGATTGGGTCGATCCCTGACTTGCACATTAAGC
195 TTGTGGCAGCGGGA-CGGCAGCACACAGAGGGGGATTGGGTCGATCCCTGACTTGCGCATTAAGC
* *
16153284 CTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
259 CTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
* * * * * ** *
16153341 AATTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGTTATGGTAGTAGGATTGGTAGCACGTA-
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* ** * * * *
16153405 GGGGGACCGGATTGATCCCTGGCTTGCATATTCTGCCTCTCC-AGCCGACTGAGTACCCGCACGC
66 GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGA-TCGACTGAGCACCCGCACAC
* *
16153469 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTAGGACCGAGG
130 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGG
* * * * * * * *
16153534 GTTGTGGCAGTGGGACTGGCAGCACACAGGGGGGGACTAGGCCGATCCCTGGCTTACGCATTTTA
194 GTTGTGGCAGCGGGAC-GGCAGCACACAGAGGGGGATTGGGTCGATCCCTGACTTGCGCA-TTAA
* * ** * * * * * *
16153599 -CCTCTCCGACCGGCTCAGTGCCGGAACACTTGTTTCATGGGTTAACTTAGTCTTATGG
257 GCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
* * ** * ** * *
16153657 GGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAAGATCGACAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCA-
* * ** * * * ** *
16153722 GGGGGGATCGGGCTGGTCCCCGGCTTGTGCATTCTGCCTTTTCGGTCGACTGAGTGCCCGCACGC
65 GGGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACAC
* * * *
16153787 TCGTTTCATGGGTTGGCTTAGACATATGGAGTTCATTCCATGTCTAAGC
130 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16153836 ATACGGAGTT
Statistics
Matches: 676, Mismatches: 126, Indels: 17
0.83 0.15 0.02
Matches are distributed among these distances:
314 2 0.00
315 131 0.19
316 263 0.39
317 183 0.27
318 97 0.14
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (315 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
GGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACACC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAGGGT
TGTGGCAGCGGGACGGCAGCACACAGAGGGGGATTGGGTCGATCCCTGACTTGCGCATTAAGCCT
CTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGA
Found at i:16153858 original size:26 final size:26
Alignment explanation
Indices: 16153809--16153860 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16153799 TTGGCTTAGA
* *
16153809 CATATGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
16153835 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
16153861 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Done.