Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 106 of 138
Found at i:16154048 original size:26 final size:26
Alignment explanation
Indices: 16154018--16154070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16154008 GTTGACTTAG
*
16154018 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16154044 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16154070 G
1 G
16154071 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16154397 original size:26 final size:26
Alignment explanation
Indices: 16154361--16154413 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16154351 GTTGGCTTAG
*
16154361 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTACATTCCCA-GTCTAA
*
16154387 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
16154413 G
1 G
16154414 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGTCTAA
Found at i:16156131 original size:26 final size:26
Alignment explanation
Indices: 16156101--16156153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16156091 GTTGGCTTAG
*
16156101 GCATACATAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
16156127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
16156153 G
1 G
16156154 ATTTGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:16156173 original size:515 final size:515
Alignment explanation
Indices: 16155014--16156194 Score: 1346
Period size: 515 Copynumber: 2.3 Consensus size: 515
16155004 CCCATTCGAT
* * * * * *
16155014 CCCCGGCTTGCGCATCCTGCCTCTCTA-GTCGACTGAGCGTCCGCATGCTTG-TTCTATGGGTTG
1 CCCCGACTTGCGCATTCTGCCTCTC-AGGTCGATTGAGCGCCCGCACGCTCGTTTC-ATGGGTTG
* * * * * * * *
16155077 ACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGGAATTCATTCCCAGTCCAAGATCGG
64 GCTTAGGCATACAGAGTTCATTCCAT-GCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* *
16155141 ACCAGATCGAGGGTTA---T---------TGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGC
128 ACCAGATCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGC
** ** ** * * *
16155194 CGGTCCCTGGATTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
193 CAATCCCCAGATTACGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* *
16155259 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAATGTAGTGGCAGCGG
258 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTAGTGGCAGCAG
** *
16155324 GACCGGCAGCAAGCAGAGGGGGATTGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGATTGG
323 GACCGGCAGCAAGCAGAGGGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGACTGG
* * * *
16155389 TTCAGCGCCCGCACACTCATTTAATTGGGTTGACCTAGGCATATGGAGTTCATTTCCAGTCTAAG
388 CTCAACGCCCGAACACTCATTTAATTGGGTTGACCTAGGCATACGGAGTTCATTTCCAGTCTAAG
* ** * * *
16155454 ATCGAGCCAGATCGAGGGTTGCGGTAACAGGATCGACAGTGCGTAGGGGGTGACCGGGTCGGT
453 ATCGAGCCAGACCGAGGGTTGCGGTAACAGGATCGACAGCACGTAGGGGGTGACCGAGCCGGA
* * * * *
16155517 CCCCGGCTTGCGCATTCTGCCTTTCAGGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGC
1 CCCCGACTTGCGCATTCTGCCTCTCAGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
* *
16155582 TTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
66 TTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* *
16155647 GGATCGAGGGTTACGGTAGCAGGACCAGCAGCAGGGTCGGCAGCACGCAGGGAGGGACCGGGCCA
131 AGATCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGG-GGGACCGGGCCA
* * * *
16155712 ATCCCCAGCTTACGCATTCTACCTTTCCAGCCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
195 ATCCCCAGATTACGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTG
* * *
16155777 GCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACC-AAGGGTTGTGGCAGCAGG
260 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAA-GGTAGTGGCAGCAGG
* * * *** * * *
16155841 ATCGGCAGCACGTAGAGGGGGACCGGGCTTTTCCTCGGCTTGCGCATTATGCCTCTCTGACTGGC
324 ACCGGCAGCAAGCAGAGGGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGACTGGC
* * * *
16155906 TCAACGCCCGAACGCTCATTTCA-TGGGTTGACTTAGGCATACGGAGTTCA-TTCCTAGTCTAAT
389 TCAACGCCCGAACACTCATTTAATTGGGTTGACCTAGGCATACGGAGTTCATTTCC-AGTCTAAG
* * ** *
16155969 ATCG-GATCGGACCGAGGGTTAG-GGTAGTAGGATCGACAGCACGTAGGAGGG-GATCGAGCCGG
453 ATCGAG-CCAGACCGAGGGTT-GCGGTAACAGGATCGACAGCACGTAGG-GGGTGACCGAGCCGG
16156031 A
515 A
* * *
16156032 CCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCTGGACGCTCGTTTCATGGGTTGGC
1 CCCCGACTTGCGCATTCTGCCTCTCAGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
* **
16156097 TTAGGCATACATAGTTCATTCCCA-GCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTGAC
66 TTAGGCATACAGAGTTCATT-CCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
16156161 CAGA-CTGAGGGTTGCTGTAGCAGGATCGGCAGCA
130 CAGATC-GAGGGTTACGGTAGCAGGACCAGCAGCA
16156195 CGCAGGGGGG
Statistics
Matches: 569, Mismatches: 86, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
502 1 0.00
503 116 0.20
504 7 0.01
506 1 0.00
514 6 0.01
515 240 0.42
516 198 0.35
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (515 bp):
CCCCGACTTGCGCATTCTGCCTCTCAGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
TTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGATCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAA
TCCCCAGATTACGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTAGTGGCAGCAGGAC
CGGCAGCAAGCAGAGGGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGACTGGCTC
AACGCCCGAACACTCATTTAATTGGGTTGACCTAGGCATACGGAGTTCATTTCCAGTCTAAGATC
GAGCCAGACCGAGGGTTGCGGTAACAGGATCGACAGCACGTAGGGGGTGACCGAGCCGGA
Found at i:16156572 original size:26 final size:26
Alignment explanation
Indices: 16156542--16156594 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16156532 GTTGACTTAG
*
16156542 GCATATAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
16156568 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
16156594 G
1 G
16156595 ATCGAACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16156949 original size:159 final size:157
Alignment explanation
Indices: 16156568--16157067 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 157
16156558 CCTAGTCTAA
* * * *
16156568 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAACCCGACCGAGGGTTGC-GACAGTAGGATCAA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCG-ACCGGACCGAGGGTT-CTGGCAGTAGAATCGA
* * * * *
16156631 CAGCACGCAGGGGGGA-CCGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCA
63 CAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* **
16156695 CCCGCATGCCCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGTTCGTTTTGTGGGTTGGCTTAG
* * * * ** * * *
16156725 GCAGAGGGAGTTCATTCCATTTGTAAGCCCCACCAGGACCGAGGGTTCTGGCAG-CGAGATTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGACC-GGACCGAGGGTTCTGGCAGTAGA-ATCGAC
* * * * * *
16156789 AGCATGCAGAGAGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
16156854 CCCGAACGTTCGTTTTGTGGGTTGACTTAG
128 CCCGCACGTTCGTTTTGTGGGTTGGCTTAG
* * * *
16156884 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCAAGGTTTTTGGCAGTAGAATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATC-GACCGGACCGAGGGTTCTGGCAGTAGAATCGAC
* * * * * * * * *
16156948 AGCACGCAGGGGGGATGGGGTCGGTCCCCAGCTCGCGCATTCTGCCTCTCCGGCTGGCTGAGTGA
64 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
16157013 CCGCACGCTT-GTTTCGTGGGTTGGCTTCG
129 CCGCACG-TTCGTTTTGTGGGTTGGCTTAG
* *
16157042 ACATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16157068 CCATACGGAG
Statistics
Matches: 269, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 49 0.18
158 93 0.35
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGACCGGACCGAGGGTTCTGGCAGTAGAATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGTTCGTTTTGTGGGTTGGCTTAG
Found at i:16157079 original size:26 final size:26
Alignment explanation
Indices: 16157043--16157093 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16157033 TTGGCTTCGA
16157043 CATACGAAGTTCATTCC-ATGTCTAAC
1 CATACGAAGTTCATTCCTA-GTCTAAC
*
16157069 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCTAGTCTAA
16157094 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAC
Found at i:16158333 original size:26 final size:26
Alignment explanation
Indices: 16158280--16158335 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16158270 TGGGTTAGCT
* *
16158280 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
16158306 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACGGAGTTCATT-CCATATC
16158332 TAAG
1 TAAG
16158336 ATCAGATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:16158877 original size:159 final size:160
Alignment explanation
Indices: 16158644--16159019 Score: 367
Period size: 159 Copynumber: 2.4 Consensus size: 160
16158634 TCGACTGAGT
* * * *
16158644 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA-GTGAGTTCATT-CCATGTCTAAGCCCTA
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCCATGTCTAAGACCTA
* * * *
16158707 GCCAGATCGAGGGTTG-TGGCAGT-AGGACCGACAGCACGTAGAGGGGGATCGGG-TCGATC-CC
65 GCCAGACCGAGGGTTGCT-ACA-TCAGGACCGACAGCACGCAGAGGGGGACCGGGCT-GATCTCC
* * * **
16158768 CGCCTTGCACATTATGCTTCT-TGGGCTGGCTCAGC
127 AG-CTTGCACATTATACCTCTCT-GGCCAGCTCAGC
* * * *
16158803 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTGTAAGATC-AG
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAG
* * ** *
16158866 ACCGGACCGAGGGTTGCTACATCTGGATTGACAGCACGCAGGGGGGGACCGGGCTGATCTCCAGC
66 -CCAGACCGAGGGTTGCTACATCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCTCCAGC
* * *
16158931 TTGCGCATTCTACCTCTCTGGCCAGCTGAGC
130 TTGCACATTATACCTCTCTGGCCAGCTCAGC
* * *
16158962 GCCCGCACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATT-CAATGTCTAAG
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
16159020 CATACGGAGT
Statistics
Matches: 177, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
158 5 0.03
159 162 0.92
160 10 0.06
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAG
CCAGACCGAGGGTTGCTACATCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCTCCAGCT
TGCACATTATACCTCTCTGGCCAGCTCAGC
Found at i:16160189 original size:158 final size:157
Alignment explanation
Indices: 16159641--16160216 Score: 467
Period size: 158 Copynumber: 3.6 Consensus size: 157
16159631 TATCACCCGT
* * * * * *
16159641 TCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGG
** * * * *** **
16159706 TTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGATCAAACTAGACCAAGGGTTACGACAAC
66 TTGACTTAGGCATACAGAGTTCAT-TCCATATCTAAGATCAAAC-GGATTGAGGGTTACGGTAAC
** *
16159770 AGGATCGGCAGCACGCAGGGGGGATCA-AG
129 AGGATCGGCAGCACAAAGGGGGGA-CAGGG
* * * * * *
16159799 CCGATCCCCGACTTTCACATTCTGCCTTTCCGACCGACTGAGCGCCCGCATGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGG
* ** * ** ** ** ***
16159864 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGTAGTG
66 TTGACTTAGGCATACAGAGTTCATTCCATATCTAAG-ATCAAACGGATTGAGGGTTACGGTAACA
* * *
16159929 GGACCGGTAGCACAAAGAGGGGGACTAGGC
130 GGATCGGCAGCACAAAG-GGGGGAC-AGGG
* * * * * *
16159959 T-GATCCCCGGCTTGAGCATTATGCCTCTCCGGCCGGCTCAGCGCTCGCACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGG
** * ** * *
16160023 TAAACTTAGGCATACAGAGTTCATTCCCTATCTAAGATTGGATCGGATTGAGGGTTACGGTACCA
66 TTGACTTAGGCATACAGAGTTCATTCCATATCTAAGA-TCAAACGGATTGAGGGTTACGGTAACA
* * *
16160088 GGATAC-ACAGCACATAGGAGGGACAGGG
130 GGAT-CGGCAGCACAAAGGGGGGACAGGG
* * * *
16160116 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCATGCTCGTTTCGTTGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGG
* * * *
16160181 TTGGCTTAGGCATACAAAATTCATTCCATGTCTAAG
66 TTGACTTAGGCATACAGAGTTCATTCCATATCTAAG
16160217 CATACGGAGT
Statistics
Matches: 321, Mismatches: 89, Indels: 16
0.75 0.21 0.04
Matches are distributed among these distances:
157 7 0.02
158 194 0.60
159 119 0.37
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGG
TTGACTTAGGCATACAGAGTTCATTCCATATCTAAGATCAAACGGATTGAGGGTTACGGTAACAG
GATCGGCAGCACAAAGGGGGGACAGGG
Found at i:16161300 original size:158 final size:159
Alignment explanation
Indices: 16161024--16161439 Score: 367
Period size: 158 Copynumber: 2.6 Consensus size: 159
16161014 GGTACCAAGC
* * * * *
16161024 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCATGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTACGGCCAGCTGAGCGCCCGCACGCATATTTCATGGGT
* * * * ** * *
16161089 TGGCTTGGGCATAGGGAGTTCATTCCATGTCTAATTCCAAGCCGGATCAAGGGTTTTGGCAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCATGTCTAATGCCAAGCCAAACCAAGGGTTGTGGCAGCAG
16161154 GACCGATAGCTCGCAGAGGGGGATCGGGT
131 GACCGATAGCTCGCAGAGGGGGATCGGGT
* * * * *
16161183 CGATCCCCGGCTTGCGCATTATGCCTCTATGTCGA-CTTAGCGCCCGCACGC-TCATTTCATGGG
1 CGATCCCCGACTTGCGCATTATGCCTCTACGGCCAGCTGAGCGCCCGCACGCAT-ATTTCATGGG
* *
16161246 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAA-GCCACAGCCAAACCGAGGGTTGTGGCAGT
65 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAATGCCA-AGCCAAACCAAGGGTTGTGGCAGC
** ** *
16161310 AGGACCGGCAGCGGGATTGACAGCACGTAGAGGGGGGCCGG-
129 AGGACCGATAGC-----T--C-GCA-G-AG-GGGGATCGGGT
* * * * * *
16161351 CTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAGCACTCGCACGC-TCATTTCGTGG
1 C-GATCCCCGACTTGCGCATTATGCCTCTACGGCCAGCTGAGCGCCCGCACGCAT-ATTTCATGG
16161415 GTTGACCTT-GGCATACGGAGTTCAT
64 GTTGA-CTTAGGCATACGGAGTTCAT
16161440 CCCCAGTCTA
Statistics
Matches: 207, Mismatches: 34, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
157 4 0.02
158 82 0.40
159 29 0.14
163 1 0.00
165 1 0.00
166 3 0.01
167 1 0.00
168 3 0.01
169 36 0.17
170 44 0.21
171 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CGATCCCCGACTTGCGCATTATGCCTCTACGGCCAGCTGAGCGCCCGCACGCATATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAATGCCAAGCCAAACCAAGGGTTGTGGCAGCAG
GACCGATAGCTCGCAGAGGGGGATCGGGT
Found at i:16161461 original size:26 final size:26
Alignment explanation
Indices: 16161425--16161477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161415 GTTGACCTTG
16161425 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16161451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16161477 G
1 G
16161478 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16161647 original size:26 final size:26
Alignment explanation
Indices: 16161611--16161661 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161601 TGGCTTAGGC
16161611 ATACAGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
*
16161637 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16161662 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:16161663 original size:184 final size:184
Alignment explanation
Indices: 16161349--16161681 Score: 517
Period size: 184 Copynumber: 1.8 Consensus size: 184
16161339 GAGGGGGGCC
** * *
16161349 GGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAGCACTCGCACGCTCATTTCGTG
1 GGCTAATCCCCGGCTTGAACATTATGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTCCGTG
*
16161414 GGTTGACCTTGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
66 GGTTGACCTTGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
*
16161479 TCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGACAGTACGCAGGTGGGAATG
131 TCAAACCGGATCGAGGGTTGTGGTAGTAGGATCGACAGTACGCAGGTGGGAATG
* * * *
16161533 GGCTGATCCCCGGCTTGAACATTCTGCCTCTCCGGCCAGCTGAGCGCCCGTACGCTCATTCCGTG
1 GGCTAATCCCCGGCTTGAACATTATGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTCCGTG
* * *
16161598 GGTTG-GCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGTATACGGAGTTCATTCCCAGTCTAA
66 GGTTGACCTT-GGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAA
16161661 GATCAAACCGGATCGAGGGTT
129 GATCAAACCGGATCGAGGGTT
16161682 ACGGCAGTAG
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
183 6 0.04
184 128 0.96
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
GGCTAATCCCCGGCTTGAACATTATGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTCCGTG
GGTTGACCTTGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAAACCGGATCGAGGGTTGTGGTAGTAGGATCGACAGTACGCAGGTGGGAATG
Found at i:16162038 original size:26 final size:26
Alignment explanation
Indices: 16161988--16162040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161978 GTTGACTTAG
*
16161988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16162014 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16162040 G
1 G
16162041 ATCAGACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16162285 original size:158 final size:159
Alignment explanation
Indices: 16162014--16162517 Score: 452
Period size: 158 Copynumber: 3.2 Consensus size: 159
16162004 CCCAGTCTAA
* * * ** * *
16162014 GCATACGGAGTTCATTCC-TAATCTAAG-ATCAGACGGGATCGAGGGTTGCAACAACAGGATTCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAAGA-TCG
* * * * * *
16162077 -CAACACGTAGGGGGGA-CCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTTGGCCAGCTGAG
64 ACAGCACGCAGGGGGGATCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAG
* *
16162140 TGCCCGCACGTCCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGTCCGTTTCGTGGGTTGGCTTAG
* * * * * ** *
16162172 GCATA-GGAGTTCATTTCATGTGTAAGCCTCAG-CCGGATCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAAGATC-GA
** * * *
16162234 CAGCACGCAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
65 CAGCACGCAG-GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGC
* * * * *
16162299 ACCCGCAC-ACTCATTTCGTGGGTTGACTTAT
129 GCCCGCACGTC-CGTTTCGTGGGTTGGCTTAG
* * *
16162330 GCATATGGAGTTTATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGA
*** * * * * * * *
16162393 CAGCACGCAGGGGGGATCAGGTCGATCCCTAACTTGCACTTTCTACCTCTCCAGTCAACTGAGCG
65 CAGCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCG
*
16162458 CCCGCACGTTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGTCCGTTTCGTGGGTTGGCTTAG
16162488 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
16162518 ACGGAGTTCT
Statistics
Matches: 272, Mismatches: 60, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 48 0.18
158 169 0.62
159 50 0.18
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAC
AGCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCGC
CCGCACGTCCGTTTCGTGGGTTGGCTTAG
Found at i:16168733 original size:25 final size:26
Alignment explanation
Indices: 16168705--16168754 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16168695 GTTGACTTAG
*
16168705 GCATACGGAG-TCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAT
*
16168730 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
16168755 AGATCGGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAT
Found at i:16169038 original size:159 final size:157
Alignment explanation
Indices: 16168810--16169233 Score: 390
Period size: 159 Copynumber: 2.7 Consensus size: 157
16168800 TAGAGAAGAC
* * * * * *** *
16168810 CGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAG-TCAAGCACCTGTACACCCGTTTC
1 CGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTC-AGCGCCCACACACTCGTTTC
* * *
16168874 CTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTT-GTG
65 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTCGTG
*
16168938 GCAGCGGGACC-AGCAGCACACAGAAGGGGAT
130 GCA---AGACCGA-CAGCACACAGAAGGGGAT
* * * * *
16168969 CGGG-CTGATCCCTGGCTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCCGCACGCTCGTTTC
1 CGGGTC-AATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCGTTTC
* * * * ** ** * *
16169033 GTGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAAGGTTACC
65 ATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAAGGTT--C
* * * **
16169097 GTGGTAAGATCGACAGCACGCAGGGGGGGAT
127 GTGGCAAGACCGACAGCACACAGAAGGGGAT
* * * * *
16169128 CGGGTCAATCCTTGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCACACACTCGTTTCA
1 CGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCGTTTCA
16169193 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16169234 ATACGGAGTT
Statistics
Matches: 213, Mismatches: 43, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
158 4 0.02
159 197 0.92
160 7 0.03
162 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
CGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACACTCGTTTCA
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTCGTGG
CAAGACCGACAGCACACAGAAGGGGAT
Found at i:16169236 original size:26 final size:26
Alignment explanation
Indices: 16169206--16169258 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169196 GTTGGCTTAG
16169206 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16169232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16169258 G
1 G
16169259 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16169969 original size:26 final size:26
Alignment explanation
Indices: 16169917--16169969 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169907 GTTGGCTTAG
* * *
16169917 GCATAGGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16169943 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16169969 G
1 G
16169970 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16170214 original size:343 final size:343
Alignment explanation
Indices: 16169142--16170286 Score: 1110
Period size: 343 Copynumber: 3.3 Consensus size: 343
16169132 TCAATCCTTG
* * * * * * *
16169142 GCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCACACACTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* **
16169207 CATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAT
66 CATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAT
* *
16169271 CGAGGGTTACGGTAGTAGGACCAGCAGTAGGATCGACAGCATGCAGGAAGGGACCGAGTCGATCC
130 CGAGGGTTGC-G--GT------AGC---AGGATCGACAGCATGCAGG-GGGGACCGAGTCGATCC
* * * * * * * *
16169336 CTGGCTTGCACATTCTACCTTTTCGACCGATTGAGCGCCTGCACACTCGTTTCATGGGTTGGCTT
182 CCGGCTTGCGCATTCTACCTCTCCGATCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTT
** *
16169401 AGGCATATAGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGAATCGA
247 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGC-G---GGA
*
16169466 CAGCGAGATCGGCAGCACGTAGAGGGGGACCAGGCTGATCCCCA
308 C--C--GA----CAGCACGTAGAGGGGGACCGGGCTGATCCCCA
* ** * * * * * * *
16169510 GTTTATGCATTATACCTCTCCGACTGGCTAAGTGCCCGCACGCTCATTACGTGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * * * *
16169575 CATACGAAGTTCATCCCCAATCTAAGCATGCGGAGTTCATTCCTAGTCTAAGATCAGACCAGATC
66 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC
** * * * * * *
16169640 GAGGGTTGCGACAGCAGGATCGACAGCATGCAAGGGGGATCGGGTCGATCCTCGACTTGTGCATT
131 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATT
* * * * * * *
16169705 CTACCTCTCCGGTTGGTTGAGCACCCTGCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGT
196 CTACCTCTCCGATCGATTGAGCACCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * * ** ** * *
16169770 TCATTCCATGTCTAAGCCCCAGCTGGGCCAAGGGTTGTGGCAGCGGGTTCGGTAGCACGTCG-GA
260 TCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGG
* *
16169834 GGGACCGGTCCGATCCCCA
325 GGGACCGGGCTGATCCCCA
* * * * *
16169853 GCTTGCGTATTCTGCCTCTTCGGCAGGCTGAGCGCTCGCACGCCCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * *
16169918 CATAGGGAGTTCATCCCCAGTGTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACC
66 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC
* * *
16169983 GAGGGTTGCGGTAGCAGGATCGACAGCAAGCAGGGGGGACCGAGTCGATCCCCGGGTTACGCATT
131 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATT
* *
16170048 CTACCTCTCCGATCGATTGAGCACCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
196 CTACCTCTCCGATCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* **
16170113 TATTCCATGTCTAAGCCCCAG-TCGGATTGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGG
261 CATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGG
* *
16170177 GGGATCGGGCTGATCCCTA
325 GGGACCGGGCTGATCCCCA
* * * * ** * * * * **
16170196 ACTTGCGCATTATGCCTCTCCGATC-GGCTCAGCACTTGAATGCTCATTTTGGGGGTTGATTTAG
1 GCTTGCGCATTATGCCTCTCCG-GCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
16170260 GCATACGGAGTTCATTCCTAGTCTAAG
65 GCATACGGAGTTCATCCCCAGTCTAAG
16170287 ATCGGACCGG
Statistics
Matches: 628, Mismatches: 144, Indels: 35
0.78 0.18 0.04
Matches are distributed among these distances:
341 1 0.00
342 81 0.13
343 285 0.45
344 9 0.01
348 1 0.00
350 1 0.00
352 1 0.00
355 42 0.07
356 91 0.14
359 3 0.00
367 1 0.00
368 109 0.17
369 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
GCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC
GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATT
CTACCTCTCCGATCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGG
GGACCGGGCTGATCCCCA
Found at i:16170430 original size:158 final size:157
Alignment explanation
Indices: 16169943--16170444 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 157
16169933 CCCAGTGTAA
* * * *
16169943 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * ** * * *
16170008 GCAAGCAGGGGGGACCGAGTCGATCCCCGGGTTACGCATTCTACCTCTCCGATCGATTGAGCACC
66 GCACGCAGGGGGGACCGGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
*
16170073 CGTATGCTCGTTTCATGGGTTGGCTTAG
130 CGAATGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
16170101 GCATACGGAGTTTATTCC-ATGTCTAAG-CCCCAGTCGGATTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCGGA-TCGGATCGAGGGTTGCGGTAGCAGGATCGA
* * * * * *
16170164 CAGCACGTAGAGGGGGATCGGG-CTGATCCCTAACTTGCGCATTATGCCTCTCCGATCGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGTC-GATCCC-GACTTGCGCATTCTGCCTCTCCGATCGACTGAG
** * *** **
16170228 CACTTGAATGCTCATTTTGGGGGTTGATTTAG
126 CACCCGAATGCTCGTTTCATGGGTTGGCTTAG
* * * *
16170260 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTACAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * *
16170325 GCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
* * * *
16170390 CGCACGTTCGTTTCATGGGTTGGGTTAG
130 CGAATGCTCGTTTCATGGGTTGGCTTAG
*
16170418 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCTAGTCTAAG
16170445 CATACGAAGT
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.55
159 116 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCC
GAATGCTCGTTTCATGGGTTGGCTTAG
Found at i:16170448 original size:26 final size:26
Alignment explanation
Indices: 16170418--16170470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16170408 GTTGGGTTAG
* *
16170418 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16170444 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16170470 G
1 G
16170471 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16170799 original size:171 final size:170
Alignment explanation
Indices: 16170477--16170799 Score: 398
Period size: 171 Copynumber: 1.9 Consensus size: 170
16170467 TAAGATCAGA
* * * *
16170477 TCGGACTGATGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCATGCAGGGGGGACCAGGCT
1 TCGGACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGACCAGGCT
* * * *
16170542 GATTCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCACCCTCACGCTCGTTTCATGGGTT
66 GATTCCTGGCTTACACATTATGCCTCTCCGATCGACTGAGCACCCTCACGCTCATTTCATGGGTT
* *
16170607 GGCCTAGGCATACGAAGTTCATTTCGTGTCTAATCCCCAG
131 GACCTAGACATACGAAGTTCATTTCGTGTCTAATCCCCAG
* ** * * **
16170647 TCGGACCGAGGGTTGTGGCAGCAGGACCGGCAATGGGATCGGCAGCACGGAGAGGGGGACCTTGC
1 TCGGACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAG-GGGGGACCAGGC
* * * *
16170712 TGA-TCCTCGGCTTACGCATTATGCCTCTCTGATCGGCTGAGCACCCGT-ACGCTCATTTCGTGG
65 TGATTCCT-GGCTTACACATTATGCCTCTCCGATCGACTGAGCACCC-TCACGCTCATTTCATGG
* *
16170775 GTTGACTTAGACATACGGAGTTCAT
128 GTTGACCTAGACATACGAAGTTCAT
16170800 CCCCAGTCTA
Statistics
Matches: 127, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
170 47 0.37
171 79 0.62
172 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (170 bp):
TCGGACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGACCAGGCT
GATTCCTGGCTTACACATTATGCCTCTCCGATCGACTGAGCACCCTCACGCTCATTTCATGGGTT
GACCTAGACATACGAAGTTCATTTCGTGTCTAATCCCCAG
Found at i:16170815 original size:26 final size:26
Alignment explanation
Indices: 16170786--16170837 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16170776 TTGACTTAGA
*
16170786 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTATAAG
*
16170812 CATACGGAGTTCATTCCCAGTATAAG
1 CATACGGAGTTCATCCCCAGTATAAG
16170838 AACGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTATAAG
Found at i:16171117 original size:159 final size:159
Alignment explanation
Indices: 16170950--16171344 Score: 459
Period size: 159 Copynumber: 2.5 Consensus size: 159
16170940 CGCATGCCCG
* *
16170950 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGATCGAGGGTT
** ** * * * * * *
16171015 GTGGCAGTGGGATCGGCAGCAAGTAGAGGGGGACCGGGTCGATCTTCGGCTTGCACATTATGCCT
66 GTGGCAGCAGGATCAACAGCAAGAAAAGAGGGACCGGGTCGATCCTCGACTTACACATTATGCCT
* *
16171080 CTTCGGTTGGCTCAGCACCTGCACGCTCA
131 CTCCGGCTGGCTCAGCACCTGCACGCTCA
* * ** *
16171109 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCGGATCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAAGCCGGATCGAGGGT
* * * * *
16171173 TGCGGTAGCAGGATCAACAGCACGAAAAGAGGGACCGGGTCGATCCTCGACTTACGCATTCTGCC
65 TGTGGCAGCAGGATCAACAGCAAGAAAAGAGGGACCGGGTCGATCCTCGACTTACACATTATGCC
* ** * *
16171238 TCTCCGGCTGGCTGAGTGCCTGCATGCTCG
130 TCTCCGGCTGGCTCAGCACCTGCACGCTCA
* * * * *
16171268 TTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGATCGAGGGTT
*
16171333 GTGGTAGCAGGA
66 GTGGCAGCAGGA
16171345 CCGGTAGTGG
Statistics
Matches: 194, Mismatches: 40, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
158 1 0.01
159 192 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGATCGAGGGTT
GTGGCAGCAGGATCAACAGCAAGAAAAGAGGGACCGGGTCGATCCTCGACTTACACATTATGCCT
CTCCGGCTGGCTCAGCACCTGCACGCTCA
Found at i:16171499 original size:26 final size:26
Alignment explanation
Indices: 16171470--16171522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171460 GTTGACTTAG
16171470 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16171496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16171522 G
1 G
16171523 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16171984 original size:158 final size:153
Alignment explanation
Indices: 16171496--16171997 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 153
16171486 CCCAGTCTAA
* *
16171496 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACCGAGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCG--
* * * ** *
16171560 AACACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGTATTCTGCCTCTTCATTCAGTTGAGTGC
63 AACACGTAGGGGGGATCGGG-CAAT-CCCGACTTGCGCATTATGCCTCTTCAACCGGTTGAGTGC
* *
16171625 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGG-TTAG
* ** * * * ** * *
16171654 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGAATGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGATAGCAGG-ATCG-
* * * * * * * ***
16171718 AACATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTTTTCGACCGGTTCAACA
63 AACACGTAG-GGGGGATCGGGC-AATCCCGA-CTTGCGCATTATGCCTCTTCAACCGGTTGAGTG
* * * *
16171783 CCCACACGTTCATTTCGTGGGTTGACTTAG
125 CCCGCACGCTCGTTTCGTGGGTTG-GTTAG
* *
16171813 TCGTAC-GAGGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGA
1 GCATACGGA-GTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGA
* * * *
16171876 TAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCGCATTTTACCTCTCCAACCGGTTGAGTG
64 -A-CACGTAGGGGGGATCGGG-CAATCC-CGACTTGCGCATTATGCCTCTTCAACCGGTTGAGTG
*
16171941 CCCGGACGCTCGTTTCGTGGGTTGGTTGAG
125 CCCGCACGCTCGTTTCGTGGGTTGGTT-AG
*
16171971 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16171998 CATACGGAGT
Statistics
Matches: 260, Mismatches: 67, Indels: 34
0.72 0.19 0.09
Matches are distributed among these distances:
157 6 0.02
158 142 0.55
159 112 0.43
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGAAC
ACGTAGGGGGGATCGGGCAATCCCGACTTGCGCATTATGCCTCTTCAACCGGTTGAGTGCCCGCA
CGCTCGTTTCGTGGGTTGGTTAG
Found at i:16172007 original size:26 final size:26
Alignment explanation
Indices: 16171971--16172023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171961 GTTGGTTGAG
16171971 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16171997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16172023 G
1 G
16172024 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16172203 original size:26 final size:26
Alignment explanation
Indices: 16172165--16172218 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16172155 TGGGTTGACT
*
16172165 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
* *
16172191 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
16172217 TA
1 TA
16172219 TGATAAGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:16172358 original size:698 final size:697
Alignment explanation
Indices: 16171434--16172723 Score: 1755
Period size: 698 Copynumber: 1.8 Consensus size: 697
16171424 TCTGACAGGC
* * *
16171434 TGAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTAATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
* *
16171499 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGATAGCAGGATCGACAACA
66 TACGGAGTTCATTCCCAATCTAAGATAAGATCGAACCGAGGGTTACGATAGCAGGATCGACAACA
* * * * * ** * * *
16171564 CGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGTATTCTGCCTCTTCATTCAGTTGAGTGCCCGT
131 CGCACGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGC
16171629 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
196 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* ** **
16171694 AAGGGTTGTGGCAGCGGGAATGGCAACATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCAT
261 AAGGGTTGTGGCAGCAGGAATGGCAACACATAGAGGGGGACCGGGCCAATCCCCAGCTTGCGCAT
* ** *
16171759 TATGCCTTTTCGACCGGTTCAACACCC-ACACGTTCATTTCGTGGGTTGACTTA-GTCGTAC-GA
326 TATGCCTCTTCGACCGGGCCAACACCCGACAC-TT-ATTTCGTGGGTTGACTTATG-CATACGGA
* * * * *
16171821 GGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGATAGCACGCAG
388 -GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* * * * * * ** *
16171886 GGGGGATCGGGTCAAT-CCTCGACTTGCGCATTTTACCTCTCCAACCGGTTGAGTGCCCGGACGC
452 AGGGCACCGGGCCAATCCCT-GACTTGCGCATTCTACCTCTCCAACCGGCTGAGCACCCGCACGC
* *
16171950 TCGTTTCGTGGGTTGG-TTGAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
516 TCATTTCGTGGGTTGGCTT-AGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
*
16172014 CCAGTCTAAGATCAAACCGGACTGAGGGTTGCGGCAGTAGGACCAGGAGTAGGATCGACAGCATG
580 CCAATCTAAGATCAAACCGGACTGAGGGTTGCGGCAGTAGGACCAGGAGTAGGATCGACAGCATG
16172079 TAGGGGGCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGCCGAT
645 TAGGGGGCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGCCGAT
**
16172132 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTAATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * * *
16172197 TATGGAGTTCATTCCCAATCTATGATAAGATCGGACCGAGGGTTACGGTAGCAGGATC-AGTAGC
66 TACGGAGTTCATTCCCAATCTAAGATAAGATCGAACCGAGGGTTACGATAGCAGGATCGA-CAAC
* * * * ** * * *
16172261 ACGCACGGGGGACCTGGTCGATCCTCGGCTTGCGCATTCTTTCTCTCCGGCCGGCTGAGCGTCCG
130 ACGCACGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCG
16172326 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
195 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * *
16172391 CGAGGGTTGTGGCAGCAGGACTGGCAGCACATAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCA
260 CAAGGGTTGTGGCAGCAGGAATGGCAACACATAGAGGGGGACCGGGCCAATCCCCAGCTTGCGCA
* *** *
16172456 TTATGCCTCTTCGACTGGGCCAGTGCCCGTACACTTGTTTCGTGGGTTGACTTATGCATACGGAG
325 TTATGCCTCTTCGACCGGGCCAACACCCG-ACACTTATTTCGTGGGTTGACTTATGCATACGGAG
* * * *
16172521 TTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAG
389 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAG
* * * * ***
16172586 GGCACCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCA
454 GGCACCGGGCCAATCCCTGACTTGCGCATTCTACCTCTCCAACCGGCTGAGCACCCGCACGCTCA
*
16172651 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAA
519 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAA
16172716 TCTAAGAT
584 TCTAAGAT
16172724 TTTGAGCCAC
Statistics
Matches: 506, Mismatches: 79, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
697 1 0.00
698 491 0.97
699 10 0.02
700 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (697 bp):
TGAGCACCCGCACGCTCGTTTAATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAATCTAAGATAAGATCGAACCGAGGGTTACGATAGCAGGATCGACAACA
CGCACGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGC
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
AAGGGTTGTGGCAGCAGGAATGGCAACACATAGAGGGGGACCGGGCCAATCCCCAGCTTGCGCAT
TATGCCTCTTCGACCGGGCCAACACCCGACACTTATTTCGTGGGTTGACTTATGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGG
CACCGGGCCAATCCCTGACTTGCGCATTCTACCTCTCCAACCGGCTGAGCACCCGCACGCTCATT
TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATC
TAAGATCAAACCGGACTGAGGGTTGCGGCAGTAGGACCAGGAGTAGGATCGACAGCATGTAGGGG
GCGACTGGGCTGATCCTTAGCTTGCGCATTATGCCTCTTCGGCCGAT
Found at i:16172515 original size:159 final size:159
Alignment explanation
Indices: 16172281--16172697 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 159
16172271 GACCTGGTCG
* * ** * ** * *
16172281 ATCCTCGGCTTGCGCATTCTTTCTCTCCGGC-CGGCTGAGCGTCCGCACGCCCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCC-GCTCGGCTCAGCACCCGCACACTCGTTTCGTGGGTT
* * *
16172345 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAG
* *
16172409 GA-CTGGCAGCACATAGAGGGGGACCGGGCCA
130 GATC-GACAGCACATAGA-GGGCACCGGGCCA
* * ** * *
16172440 ATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGGC-CAGTGCCCGTACACTTGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTCCG-CTCGGCTCAGCACCCGCACACTCGTTTCGTGGGTT
* * * *
16172504 GACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCATACCGAGGGTTGTGGCAGCA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCA
* *
16172567 GGATCGACAGCACGTAGAGGGCACCGGGCCG
129 GGATCGACAGCACATAGAGGGCACCGGGCCA
* * * * * * *
16172598 ATCCCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGCTCGGCTCAGCACCCGCACACTCGTTTCGTGGGTTG
16172663 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16172698 TACAGAGTTC
Statistics
Matches: 211, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.03
158 89 0.42
159 108 0.51
160 7 0.03
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGCTCGGCTCAGCACCCGCACACTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGG
ATCGACAGCACATAGAGGGCACCGGGCCA
Found at i:16172683 original size:158 final size:158
Alignment explanation
Indices: 16172194--16172695 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 158
16172184 CCCAGTCTAA
* * * * * ** *
16172194 GCATATGGAGTTCATTCCCA-ATCTATGATAAGATCGGACCGAGGGTTACGGTAGCAGGATC-AG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-
* * * * ** *
16172257 TAGCACGCACG-GGGGACCTGGTCGAT-CCTCGGCTTGCGCATTCTTTCTCTCCGGCCGGCTGAG
64 CAGCACGTA-GAGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* *
16172320 CGTCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
16172352 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * * *
16172415 CAGCACATAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGGC-CAG
64 CAGCACGTAGA-GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG-GTCGGCTGAG
* * * * * *
16172479 TGCCCGTACACTTGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
**
16172511 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCATACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
16172575 AGCACGTAGAGGGCACCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCAC
65 AGCACGTAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
16172640 CCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16172669 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16172696 CATACAGAGT
Statistics
Matches: 273, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 12 0.04
158 136 0.50
159 116 0.42
160 9 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16172719 original size:26 final size:26
Alignment explanation
Indices: 16172669--16172721 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172659 GTTGGCTTAG
* *
16172669 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16172695 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16172721 G
1 G
16172722 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16173754 original size:159 final size:160
Alignment explanation
Indices: 16173555--16173931 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 160
16173545 CGACTGAGCT
* *
16173555 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * * * * * * * *
16173618 CCAGACTGAGGGTTGTGGCAGCTGGACCGATAGCACATCGAGGGGGACCGGGCTGATCCTCGGCT
65 CCAGACCGAGGGTTGCGACAGCAGGACCGACAGCACATAGAGGGGGACCGAGCCGATCCCCGGCT
* * *
16173683 TGCGCATTATGCCTCTCCGATCGGCTCAGCA
130 TGCGCATTATGCCTCTCCAACCGGCACAGCA
* * * * *
16173714 CCCGCACGCTCGTTTTGTGGGTTGACTTAAGCCTACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * ** * ** *
16173777 CCGGACCGAGGGTTGCGATAGCAGGATCGACAGCATGTAGGGGGGGATTGAGCCGGTCCCCGGCT
65 CCAGACCGAGGGTTGCGACAGCAGGACCGACAGCACATAGAGGGGGACCGAGCCGATCCCCGGCT
* * *
16173842 TGCGCATTCTGCCTCTCCAACCGGCAGAGCG
130 TGCGCATTATGCCTCTCCAACCGGCACAGCA
* * *
16173873 CCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16173932 TACGGAGTTC
Statistics
Matches: 175, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 6 0.03
159 164 0.94
160 5 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (160 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCGAGGGTTGCGACAGCAGGACCGACAGCACATAGAGGGGGACCGAGCCGATCCCCGGCTT
GCGCATTATGCCTCTCCAACCGGCACAGCA
Found at i:16174360 original size:159 final size:158
Alignment explanation
Indices: 16174129--16174568 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 158
16174119 TAGGATCGGT
* * * * **
16174129 AGCACACAGGGGGGGACC-AGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTTTGCTGAGC
1 AGCACACAGAGGGGGACCGA-GCCAATCCCCGGCTTGCGCATTCTGCCTCT-CGGTCGGCTGAGC
* * * * *
16174193 GCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGATGCAG-
64 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CAGA
*
16174257 CCAGACCGAAGGTTGTGGCAGT-G-GA-ACCGAC
128 CCAGACC-AAGG--GTGGCAGTAGCAAGACCGAC
** * * * *
16174288 AGCATGCAGAGGGGGACCGAGCCTATCCCCGGCTTACGCATTATGCCTCTCTGGTCGGCTCAGCG
1 AGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTC-GGTCGGCTGAGCG
* * *
16174353 CCCGCACGCTCATTTCGTGGGTTGAG-TTAGGCTTACGGAGTTAATTCCCA-GTCTAAGATTAGA
65 CCCGCACGCTCATTTCGTGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGA
* * * *
16174416 CCGGATCAAGGGTTGCAGTAGCAAGATCGAC
128 CCAGACCAAGGGTGGCAGTAGCAAGACCGAC
* * * * * * *
16174447 AGCACATAGAGGGGGACCGGGTCAATCCCCGGCTTGCTCATTCTGCCTCTCCGACTGGCTGAACG
1 AGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCGGTC-GGCTGAGCG
* * *
16174512 CCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAG
65 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16174569 CATCCGGAGT
Statistics
Matches: 228, Mismatches: 42, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
156 7 0.03
157 1 0.00
158 14 0.06
159 201 0.88
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCACACAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCGGTCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCA
GACCAAGGGTGGCAGTAGCAAGACCGAC
Found at i:16174578 original size:26 final size:26
Alignment explanation
Indices: 16174542--16174594 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16174532 GTTGGCTTAG
16174542 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
16174568 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16174594 G
1 G
16174595 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16175400 original size:26 final size:26
Alignment explanation
Indices: 16175360--16175409 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16175350 TGGCTTAGGC
16175360 ATACGGAGTTCATT-CCATGTCTAAAG
1 ATACGGAGTTCATTCCCA-GTCTAAAG
*
16175386 ATACGGAGTTGATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
16175410 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAAG
Found at i:16175495 original size:11 final size:11
Alignment explanation
Indices: 16175479--16175511 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16175469 CTCGGGGCAC
16175479 CATCGCCAGAG
1 CATCGCCAGAG
*
16175490 CATCGCCGGAG
1 CATCGCCAGAG
16175501 CATCGCCAGAG
1 CATCGCCAGAG
16175512 AGCCTAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.36, G:0.30, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:16176570 original size:158 final size:158
Alignment explanation
Indices: 16176113--16176617 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 158
16176103 ATCCCCAGTC
* * * *
16176113 TAAGCATACAAAGTTCATTCCCA--ACGTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGAT
1 TAAGCATACGAAGTTCATT-CCATGTC-TAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
16176176 CGACAGCACGCAAGGGGGATTGGGTCGATCCCTGGCTTACACATTCTACCTCTCTGGTCAGCTGA
64 CGACAGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGA
* * * *
16176241 GTGCCCGCACGCCCGTTTCATGGGTTGGAC-
129 GCGCCCGCACGCTCATTTCGTGGGTT-GACT
* * ** * * * * *
16176271 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATTGAGGGTTGTGGCAGCGGGACC
1 TAAGCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
** * *
16176335 GGTAGCACGCAGAGGGGGACTGGGTCGATCACC-GGCTTGCGCATTATGCCTC-TTCGATCGGCT
65 GACAGCACGCAG-GGGGGACTGGGTCGATC-CCTGGCTTGCGCATTCTGCCTCTTTAG-TCGGCT
*
16176398 CAGCGCCCGCACGCTCATTTCGTGGGTTGACT
127 GAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * *
16176430 TATGCATACGAAGTTTATT-CATAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATC
1 TAAGCATACGAAGTTCATTCCAT-GTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* *
16176494 GACAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTTTAGTCGGCTGAG
65 GACAGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGAG
* * *
16176559 CGCCCACACGCTCATTTCGTGGGATGGCT
130 CGCCCGCACGCTCATTTCGTGGGTTGACT
*
16176588 TAGGCATAC-AGAGTTCATTCCCA-GTCTAAG
1 TAAGCATACGA-AGTTCATT-CCATGTCTAAG
16176618 TTTTTGAGCC
Statistics
Matches: 280, Mismatches: 53, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
157 6 0.02
158 150 0.54
159 120 0.43
160 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTAGTCGGCTGAGC
GCCCGCACGCTCATTTCGTGGGTTGACT
Found at i:16177605 original size:159 final size:159
Alignment explanation
Indices: 16177378--16177816 Score: 530
Period size: 159 Copynumber: 2.8 Consensus size: 159
16177368 CAGGATCGGT
* * * * ** *
16177378 AGCACGCA-AGGTGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCA
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCAAGCTGAGCG
* * *
16177442 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCCAACC
66 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
* * *
16177507 GGACCGAGGGTTGTGGCAGTAAG-ACCGGC
131 AGACCGAGGGTTGCGGCAG-AAGCACCGAC
* * * * *
16177536 AGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCAAGCTCAACG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCAAGCTGAGCG
* *****
16177601 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGAC
66 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAAC
* *
16177665 CAGACCGAGGGTTGCGGCAGCAGCATCGAC
130 CAGACCGAGGGTTGCGGCAGAAGCACCGAC
* * *
16177695 AGCACGCAG-GGGGGA-CTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCTGATCGA-CTGAG
1 AGCACGCAGAGGGGGATC-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTG-GCAAGCTGAG
*
16177757 CGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16177817 ATACGGAGTT
Statistics
Matches: 238, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
157 4 0.02
158 103 0.43
159 128 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCAAGCTGAGCG
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
AGACCGAGGGTTGCGGCAGAAGCACCGAC
Found at i:16177825 original size:26 final size:26
Alignment explanation
Indices: 16177789--16177841 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16177779 GTTGGCTTAG
16177789 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16177815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16177841 G
1 G
16177842 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16181552 original size:26 final size:26
Alignment explanation
Indices: 16181523--16181574 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181513 TGACTTAGGC
16181523 ATACGAAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
* *
16181549 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
16181575 TTAGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:16181876 original size:159 final size:158
Alignment explanation
Indices: 16181694--16182049 Score: 371
Period size: 158 Copynumber: 2.2 Consensus size: 158
16181684 CTGTTTCATG
* * *
16181694 GGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCAACCGGA-CTGAGGGTTGTGCC
1 GGTTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAACCAGATC-GAGGGTTGTGAC
* *
16181757 AGCGA-GACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGATTTACGCATGATGCCTCTCC
64 AG-GAGGACCGACAGCACGCA-AGGGGGATCGGGTCGATCCCCGACTTACGCATGACGCCTCTCC
*
16181821 GGTCGGCTCAGCGCCCGAATGCTCATTTCGT-
127 GGCCGGCTCAGCGCCCGAATGCTCATTTCGTA
** ** ** *
16181852 GGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTAGATCGAGGGTTGTGAT
1 GG-TTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGAC
* * * * * * ** *
16181916 AGTAGGATCGATAGCACGTAAGGGGGATCGGGTCGGTCCCCGACTTATGCATTCCGCCTCTCTGG
64 AGGAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTACGCATGACGCCTCTCCGG
* * * * *
16181981 CCTGCTGAGCGTCTGCATGCTCATTTCGTA
129 CCGGCTCAGCGCCCGAATGCTCATTTCGTA
*
16182011 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16182050 ATACGAAGCT
Statistics
Matches: 162, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 95 0.59
159 58 0.36
160 6 0.04
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGACAG
GAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTACGCATGACGCCTCTCCGGCC
GGCTCAGCGCCCGAATGCTCATTTCGTA
Found at i:16182185 original size:13 final size:13
Alignment explanation
Indices: 16182167--16182191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16182157 TGCTAATTAT
16182167 GCCTCTCCGACCG
1 GCCTCTCCGACCG
16182180 GCCTCTCCGACC
1 GCCTCTCCGACC
16182192 TGCTGAGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.56, G:0.20, T:0.16
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:16182267 original size:26 final size:26
Alignment explanation
Indices: 16182231--16182283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16182221 GTTGACTTAG
*
16182231 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16182257 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16182283 G
1 G
16182284 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16183327 original size:26 final size:26
Alignment explanation
Indices: 16183297--16183349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16183287 GTTGAATTAG
*
16183297 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16183323 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16183349 G
1 G
16183350 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16183755 original size:159 final size:158
Alignment explanation
Indices: 16183387--16183756 Score: 422
Period size: 159 Copynumber: 2.3 Consensus size: 158
16183377 TAGGATCGGT
* * *
16183387 AGCACGCAGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTAGCTGAGTGC
1 AGCACGCAGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCAGCTCAGTGC
* * ** * *
16183452 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCGTGTCTAAGGCCCAGTCG
66 CCGCACGCCCGTTTCATGAGTTGACTTACACATACGGAGTTCACTCCGTGTCTAAGGACCAGTCG
* *
16183517 GACCGAGGGTTGTGGCAGCGAGATCGAC
131 GACCAAGGGTTCTGGCAGCGAGATCGAC
** * *
16183545 AGCACGCAGAGGGGGATAGGGTTGATCCCCGGCTTGTGCATTTTGCCTCTTCGATCGGCTCAGTG
1 AGCACGCAG-GGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCAGCTCAGTG
* * * * **
16183610 CCCGCACGCTCGTTTCGTGAGTTGACTTACACATACGGAGTTCATTGC-TAGTCTAA-GATTAGA
65 CCCGCACGCCCGTTTCATGAGTTGACTTACACATACGGAGTTCACTCCGT-GTCTAAGGACCAG-
* *
16183673 TCGGACTAAGGGTTCTGGTAGC-ATGATCGAC
128 TCGGACCAAGGGTTCTGGCAGCGA-GATCGAC
* * * * *
16183704 AGCACGCAAGGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCATCTTCG
1 AGCACGC-AGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTTCG
16183757 GTCGACTGAG
Statistics
Matches: 176, Mismatches: 31, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
158 14 0.08
159 160 0.91
160 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCAGCTCAGTGC
CCGCACGCCCGTTTCATGAGTTGACTTACACATACGGAGTTCACTCCGTGTCTAAGGACCAGTCG
GACCAAGGGTTCTGGCAGCGAGATCGAC
Found at i:16184180 original size:26 final size:26
Alignment explanation
Indices: 16184150--16184202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184140 GTTGACTTAG
*
16184150 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
16184176 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16184202 G
1 G
16184203 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16184708 original size:158 final size:157
Alignment explanation
Indices: 16184176--16184833 Score: 507
Period size: 158 Copynumber: 4.2 Consensus size: 157
16184166 CCTAGTCTAA
* *
16184176 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACT-GAACTGAGGGTTCCGACAGCAGGATCAAC
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAAACTGGATC-GAGGGTT-CGGCAGCAGGATCAAC
* * * * * * *
16184240 AGCACGTAAAGGGGACCA-GGCCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTGAACG
63 AGCACCTAAGGGGGACCAGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCG
* * *
16184304 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * *
16184334 GCATAGGGAGTTCATTCCAAGTCTAAG-CCCCAGTCAGACCGAGGGTTGGGCAGC-GAGACCAAC
1 GCATA-CGAGTTCATTCCCAGTCTAAGATCAAACT-GGATCGAGGGTTCGGCAGCAG-GATCAAC
* * * ** * * *
16184397 AGCACGTAGAGGGGGACC-GGGCCGATCC-CAAGCTTGCGCATTATGCCTTTTTGGCCAACTCAG
63 AGCACCTA-AGGGGGACCAGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGACCGACTGAG
* * * *
16184460 CACCCGCACGCTCATTTTG-GGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * * * * **
16184491 CCATACGAAGTTCGTTCCTAGTGTAAGATCGGACCAGAAT-GAGGGTTGCTGCAGTAGGATTGAC
1 GCATACG-AGTTCATTCCCAGTCTAAGATC-AAACTGGATCGAGGGTT-CGGCAGCAGGATCAAC
* * * *
16184555 AGCACCTAAGGGGGA-CAGGGTCGATCCTCGGCTTGTGCATTATGCCTCTTCGGCCGACTGAGCG
63 AGCACCTAAGGGGGACCAGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCG
* *
16184619 CCCGCACGCTCGTTTCATGGGTTGACATAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
16184649 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGGTAGCAGGATTGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTT-CGGCAGCAGGATCAACA
* * * *
16184714 -CTACGC--AGAGGGGATC-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAG
64 GC-AC-CTAAG-GGGGACCAGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAG
* *
16184775 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16184807 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATAC-GAGTTCATTCCCA-GTCTAAG
16184834 CATACGGAGT
Statistics
Matches: 390, Mismatches: 88, Indels: 44
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 129 0.33
158 250 0.64
159 8 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTCGGCAGCAGGATCAACAGC
ACCTAAGGGGGACCAGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16184843 original size:26 final size:26
Alignment explanation
Indices: 16184807--16184859 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184797 GTTGGCTTAG
16184807 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16184833 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16184859 G
1 G
16184860 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16185190 original size:26 final size:26
Alignment explanation
Indices: 16185160--16185209 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16185150 GGCTTAGGCA
16185160 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
16185186 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16185210 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:16185539 original size:26 final size:26
Alignment explanation
Indices: 16185509--16185561 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16185499 GTTGACTTAG
*
16185509 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16185535 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16185561 G
1 G
16185562 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16186315 original size:171 final size:171
Alignment explanation
Indices: 16186004--16186372 Score: 397
Period size: 171 Copynumber: 2.2 Consensus size: 171
16185994 CAATGGCTAA
* * *
16186004 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAAGACTAGCA
1 GCATACGGAGTTCATTCACAGTCTAAGACCAGACCAGACCGAGGGTTATGGCAGCAAGACTAGCA
* * * * *
16186069 GCAGGATCGACAGCACACAGGGAGGGACCGAGCTGATCCCCGGCTTGCGTATTCTGCCTCTTCGG
66 GCAGGATCGACAGCACACAAGGAGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCCCTTCAG
* * * * *
16186134 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
131 CCGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
* * ** *
16186175 GCATACGGAGTTCATT-ACATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGCGGGACTGG
1 GCATACGGAGTTCATTCACA-GTCTAAG-ACCAGACCAGACCGAGGGTTATGGCAGCAAGACTAG
* * *
16186238 CAGTAGGATCGACAGCACGTA-AAGG-GGGATCGAGCTGATCCTCGGCTTGCGCATTATGCCCC-
64 CAGCAGGATCGACAGCAC--ACAAGGAGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCCCT
* * *
16186300 TCTAGCCTACTGAGCGCTCACACACTCTTTTCGTGGGTTGACTTAG
127 TC-AGCCGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
* * * * *
16186346 GTATACGAAATTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCACAGTCTAAG
16186373 CTTATGGAGT
Statistics
Matches: 163, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
170 4 0.02
171 151 0.93
172 7 0.04
173 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (171 bp):
GCATACGGAGTTCATTCACAGTCTAAGACCAGACCAGACCGAGGGTTATGGCAGCAAGACTAGCA
GCAGGATCGACAGCACACAAGGAGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCCCTTCAG
CCGACTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAG
Found at i:16186688 original size:159 final size:157
Alignment explanation
Indices: 16186436--16187132 Score: 596
Period size: 159 Copynumber: 4.3 Consensus size: 157
16186426 CAGGATCGAC
* * * * *
16186436 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGACTGAGTGA
1 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGTGC
* * * * *
16186501 CCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
66 CCGAACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCCA
*
16186566 GACCAAGGGTTGTGGTAGTAGGACCGGT
130 GACCGAGGGTTGTGGTAGTAGGACCGGT
* * *
16186594 AGCACGCAGAGGGGGACCGGGCCTATCCCTGACTTACGCATTATGCCTCTCCGA-TCGGCTCAGT
1 AGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACT-GGCTCAGT
* * * **
16186658 GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGA
64 GCCCGAACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-
* * **
16186722 CCAAACTGAGGGTTACGATAGTTGTACCAGTAGCAAGATTGGT
127 CCAGACCGAGGGTT--G-T-G--GT---AGTAG---GACCGGT
* * * * * * *
16186765 AACACGTAGGGGGGACCGGGTCGATCCCCGACTTACGCTTTTTGCCTCTCCGACTGGCTGAGTGC
1 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGTGC
* * * *
16186830 CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCGAACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCA
* * *
16186895 GATCGAGGGTTGTGGCAGCAGGACCGGT
130 GACCGAGGGTTGTGGTAGTAGGACCGGT
** * * ** *
16186923 AGCACATAGAGGAGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTCTGA-TCGGCTCAGT
1 AGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACT-GGCTCAGT
* * * * * ** * *
16186987 GCCTGAACGCTCGTTTTGTGGATTGACTTAGGCATACGGAGTTCATTCCCA-GTCGAAGATCGGA
64 GCCCGAACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGC
** * * * *
16187051 TGGACTGAGGGTTGCGGTAGTAGGACCAGC
128 CAGACCGAGGGTTGTGGTAGTAGGACCGGT
* * *
16187081 AGCACGCAGGAGGGACTCGA-CCGATCCCCG-CTTGCGCATTCTGCCTCTCCGA
1 AGCACGCAGGGGGGAC-CGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGA
16187133 TCGACCTCTC
Statistics
Matches: 427, Mismatches: 89, Indels: 48
0.76 0.16 0.09
Matches are distributed among these distances:
156 19 0.04
157 14 0.03
158 58 0.14
159 189 0.44
160 6 0.01
161 5 0.01
162 1 0.00
163 1 0.00
164 1 0.00
165 2 0.00
166 1 0.00
167 1 0.00
168 6 0.01
169 3 0.01
170 104 0.24
171 16 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGTGC
CCGAACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCAG
ACCGAGGGTTGTGGTAGTAGGACCGGT
Found at i:16187142 original size:13 final size:13
Alignment explanation
Indices: 16187124--16187150 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16187114 GCGCATTCTG
16187124 CCTCTCCGATCGA
1 CCTCTCCGATCGA
16187137 CCTCTCCGATCGA
1 CCTCTCCGATCGA
16187150 C
1 C
16187151 TGAGCGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.48, G:0.15, T:0.22
Consensus pattern (13 bp):
CCTCTCCGATCGA
Found at i:16187716 original size:26 final size:26
Alignment explanation
Indices: 16187687--16187739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16187677 GTTGGCTTAG
*
16187687 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
16187713 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16187739 G
1 G
16187740 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16187781 original size:512 final size:503
Alignment explanation
Indices: 16186787--16187915 Score: 1150
Period size: 512 Copynumber: 2.2 Consensus size: 503
16186777 GGACCGGGTC
* * * * * * * *
16186787 GATCCCCGACTTACGCTTTTTGCCTCTCCGACTGGCTGAGTGCCCGCACACCCGTTTCGTGGGTT
1 GATCCCCGACTTTCGCATTCTACCTCTCGGACTAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
*
16186852 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGG
** * * * **
16186917 ACCGGTAGCACATAGAGGAGGACCGAGCTGATCCCCGACTTGTGCATTATGCCTCTCTGATCGGC
131 ACCGACAGCACATAGAGGAGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACCAAC
* * * * *
16186982 TCAGTGCCTGAACGCTCGTTTTGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGAT
196 TCAGCGCCCGAACGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTAATTCCCAGTCGAAGAT
* * ** *
16187047 CGGATGGACTGAGGGTTGCGGTAGTAGGACCAGCAGCACGCAGGAGGGACTCGACCGATCCCCGC
261 CGGACGGACTGAGGGTTGCGGCAACAAGACCAGCAGCACGCAGGAGGGACTCGACCGATCCCCGC
* * *
16187112 TTGCGCATTCTGCCTCTCCGATCGACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGG
326 CTGCACATTCTG---C-CC-AT---CCTCT-CGATCGACTGAGCGCCCGCACGCTCGTTTCACGG
* * *
16187177 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATATGGAGTTCATTCCCAGTCTAATAT
382 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACGGAGTTCATTCCAAGTCTAAGAT
* * * **
16187242 CGGACCAGGCCGAGGGTTGCGGCAGCAGCATCGACAGCACGTTGGGGGGATC-AGGCT
447 CGAACCAGACCGAGGGTTGCGGCAGCAGCATAGACAGCACGCAGGGGGGATCGA-GCT
* * * * *
16187299 -ATTCCCCGA-TTTACGCATTCTACCTCTCCGGTC-GGTTGAGCGCCCGTACGCCCATTTCGTGG
1 GA-TCCCCGACTTT-CGCATTCTACCTCT-CGGACTAGCTGAGCGCCCGCACGCCCGTTTCGTGG
* *
16187361 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGC
63 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
* * * * * * * * *
16187426 GGGACCGACGGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCT-TTTCGGC
128 AGGACCGACAGCACATAGAGGAGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCT-GAC
* * * * * *
16187490 CAACTCAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCGTACGGGGTTAATTCCCAGTCTA
192 CAACTCAGCGCCCGAACGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTAATTCCCAGTCGA
* * * * *
16187555 AGATCGGACCGGACTGAGGGTTGCGGCAACAAGATC-GATAGCACGTAGG-GGGA-TCGGGCCGG
257 AGATCGGA-CGGACTGAGGGTTGCGGCAACAAGACCAG-CAGCACGCAGGAGGGACTC-GACCGA
* * *
16187617 TCCTCGACCTGCACATTCTG-CC-T-CTCT-GATCGACTGAGCGCCTGCACGCTTGTTTCACGGG
319 TCCCCG-CCTGCACATTCTGCCCATCCTCTCGATCGACTGAGCGCCCGCACGCTCGTTTCACGGG
* * * *
16187678 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCTAAGTCTAAGAT
383 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCAAAGCATACGGAGTTCATTCCAAGTCTAAGAT
* * *
16187742 CGAACCAGACTGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATAGGCAGCATGCAGGGGGGATCG
447 CGAACCAGACCGAGGG-T-T-GC----GG--CAGCAGC---ATAGACAGCACGCAGGGGGGATCG
16187807 AGCT
500 AGCT
* * * * * * *
16187811 GATCCTCGACTTTTGCATTCTACCTCTCTGACTAGCTGAGCACCCGCATGCTCGTTTCGTTGGTT
1 GATCCCCGACTTTCGCATTCTACCTCTCGGACTAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
*
16187876 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
16187916 TCGGACAGAG
Statistics
Matches: 507, Mismatches: 85, Indels: 50
0.79 0.13 0.08
Matches are distributed among these distances:
499 3 0.01
500 97 0.19
501 1 0.00
502 5 0.01
503 2 0.00
506 1 0.00
507 2 0.00
508 2 0.00
509 7 0.01
511 10 0.02
512 328 0.65
513 49 0.10
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (503 bp):
GATCCCCGACTTTCGCATTCTACCTCTCGGACTAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGG
ACCGACAGCACATAGAGGAGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACCAAC
TCAGCGCCCGAACGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTAATTCCCAGTCGAAGAT
CGGACGGACTGAGGGTTGCGGCAACAAGACCAGCAGCACGCAGGAGGGACTCGACCGATCCCCGC
CTGCACATTCTGCCCATCCTCTCGATCGACTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTA
GGCATACGGAGTTCATCCCCAGTCAAAGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGA
CCGAGGGTTGCGGCAGCAGCATAGACAGCACGCAGGGGGGATCGAGCT
Found at i:16189049 original size:512 final size:510
Alignment explanation
Indices: 16188103--16189153 Score: 1229
Period size: 512 Copynumber: 2.1 Consensus size: 510
16188093 GAGGGTTGCA
* * **
16188103 ATAGCAGGATCGACAGCACGGAGGGGGGACCGGGCTAATCCATGGCTTGCGCATTCTGCCTCTTC
1 ATAGCAAGATCGACAGCACGTAGGGGGGACCGGGCTAATCCACAGCTTGCGCATTCTGCCTCTTC
* *
16188168 GGTCGGCTAAGCACCCATACACCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GATCGGCTAAGCACCCATACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * **
16188233 CTAAACCCAGTCGGACCGATGGTTGTGGTAGTAGGATCGACAGCACGCAGAGGGGGACTGGGTTG
131 CTAAACCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGAGCCG
* * * * * * *
16188298 ATCCCGGCTTGTGCATTAGGTCTCTCCAGTCAGCTCCGCGCCCGAATGCTCATTTCATGGGTTGA
196 ACCCCGGCTTGCGCATTAGGCCACTCCAGTCAGCTCAGCACCCGAACGCTCATTTCATGGGTTGA
* ** *
16188363 CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGATCGGACCGAGGGTTGTGACAGCAGGAT
261 CTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGAT
* * *
16188428 CGATAGCACGCAAGGGGGATCGACCGATCCCCAGCTTGGGCATTCTGCCTCTCTGACCGTCTGAG
326 CGACAGCACGCAAGGGGGATCGACCGATCCCCAGCTTAGGCATTCTGCCTCTCCGACCGTCTGAG
*
16188493 CGCCCGCACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCAATGTGTAAGCATAG-
391 CGCCCGCACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCAT-GC
** ** *
16188557 GGAGATCATTCCCAGTCTAAGATCGGATCGGA-CTGAGGGTTGTGGTAGCAGGACC-
455 GGAGATCATTCCCAGTCTAAGATCGGATCAAATC-GAGGGTTACGGTAGCAAGACCG
* * * * *
16188612 AGTAGCAAGATCGGCAGCACGTAGGGGGG-CGGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTT
1 A-TAGCAAGATCGACAGCACGTAGGGGGGACCGGGCTAATCCACAGCTTGCGCATTCTGCCTCTT
* * * * * * **
16188676 CGATCGGTTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATG
65 CGATCGGCTAAGCACCCATACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * *
16188741 TCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCT-AG
130 TCTAAACCC-AGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGA-CTGAG
* * * * *
16188805 CCGACCCCTGGCTTGCGCATTATGCCACTTC-GGCTGGCTCAGCACCCGAACGCTCATTTCTTGG
193 CCGACCCC-GGCTTGCGCATTAGGCCACTCCAGTC-AGCTCAGCACCCGAACGCTCATTTCATGG
* * * **
16188869 GTTGACTTAGGCTTACGAAGTTCATTCCTAGTTTAAGATCAGA-CTGGACCGAGGGTTGCGGTAG
256 GTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAGATC-GGACCGAGGGTTGCGACAG
* * ** * * *
16188933 CAGGATTGACAGCACGC-AGAGGGGATTGGGTCGGTCCCCAGGTTATGCATTCTGCCTCTCCGAT
320 CAGGATCGACAGCACGCAAG-GGGGA-TCGACCGATCCCCAGCTTAGGCATTCTGCCTCTCCGA-
* * * * *
16188997 CGGT-TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCT
382 CCGTCTGAGCGCCCGCACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCAATGTCT
* * *
16189061 AAGCATGCGGAGTTGATTCCCAGTTTAAGATCGGATCAAATCGAGGGTTACGGTAGCAAGACCG
447 AAGCATGCGGAGATCATTCCCAGTCTAAGATCGGATCAAATCGAGGGTTACGGTAGCAAGACCG
* *
16189125 ATAGCAAGATCGACAGCACATAGTGGGGA
1 ATAGCAAGATCGACAGCACGTAGGGGGGA
16189154 TCAGACCGAT
Statistics
Matches: 449, Mismatches: 80, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
509 93 0.21
510 75 0.17
511 117 0.26
512 159 0.35
513 5 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (510 bp):
ATAGCAAGATCGACAGCACGTAGGGGGGACCGGGCTAATCCACAGCTTGCGCATTCTGCCTCTTC
GATCGGCTAAGCACCCATACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAACCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGAGCCG
ACCCCGGCTTGCGCATTAGGCCACTCCAGTCAGCTCAGCACCCGAACGCTCATTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGAT
CGACAGCACGCAAGGGGGATCGACCGATCCCCAGCTTAGGCATTCTGCCTCTCCGACCGTCTGAG
CGCCCGCACACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCATGCG
GAGATCATTCCCAGTCTAAGATCGGATCAAATCGAGGGTTACGGTAGCAAGACCG
Found at i:16189277 original size:26 final size:26
Alignment explanation
Indices: 16189247--16189298 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16189237 GTTGACTTAG
16189247 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16189273 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16189299 CATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16189564 original size:197 final size:197
Alignment explanation
Indices: 16189222--16189582 Score: 519
Period size: 197 Copynumber: 1.8 Consensus size: 197
16189212 GAGTGCCCGT
16189222 ACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
1 ACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
* * * * * * *
16189287 TTCCCAGTCTAACATCGGACCGGATCGAGGGTTGCGATAGTAGGACCAACAGCATGCAGGGGGTA
66 TTCCCAGTCTAACATCGGACCGGACCGAGGGTTACAACAGCAGGACCAACAGCACGCAGGGGGGA
*
16189352 CTAGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCCTCTCTGACCGATTGAGGGGCC
131 CTAGGTCGATCCCCGGCCTGCGCATTCTACCTCTTCGGTCGGCCTCTCTGACCGATTGAGGGGCC
16189417 GC
196 GC
* ** *
16189419 ACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATAC-GAAGTTC
1 ACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAG-AGTTC
* * * *
16189483 ATTCCCAGTCTAATATCGGACTGGACCGAGGGTTACAACAGCAGGATCGACAGCACGCAGGGGGG
65 ATTCCCAGTCTAACATCGGACCGGACCGAGGGTTACAACAGCAGGACCAACAGCACGCAGGGGGG
* * *
16189548 A-TCGGGTCGTTCCCCGGCCTGTGCATTCTACCTCT
130 ACT-AGGTCGATCCCCGGCCTGCGCATTCTACCTCT
16189583 CCGAACGACT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
196 2 0.01
197 141 0.99
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (197 bp):
ACGCTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
TTCCCAGTCTAACATCGGACCGGACCGAGGGTTACAACAGCAGGACCAACAGCACGCAGGGGGGA
CTAGGTCGATCCCCGGCCTGCGCATTCTACCTCTTCGGTCGGCCTCTCTGACCGATTGAGGGGCC
GC
Found at i:16189889 original size:26 final size:26
Alignment explanation
Indices: 16189853--16189905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16189843 GTTGGCTTAG
16189853 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16189879 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16189905 G
1 G
16189906 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16190106 original size:197 final size:196
Alignment explanation
Indices: 16189743--16190122 Score: 503
Period size: 197 Copynumber: 1.9 Consensus size: 196
16189733 CTGAGGGTTG
* * * *
16189743 CAGCAGTAGGATGGATAGCACGTAGGAGGGATCGGGCTGATCCCCGGCTTGCACATTTTGCCTCT
1 CAGCAGCAGGATGGATAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT
* * * * *
16189808 CTGGCCGACTGAGTGCCTGCACGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
66 CCGACCGACTGAGCGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCAT
* * * * *
16189873 GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGAA
131 ATCTAAGCATACAGAGTTCATTCCCAATCGAAGATCAAACCAGATCGAGGGTTGCGATAGCAGAA
16189938 C
196 C
* *
16189939 CAGCAGCAGGATCGG-TAGCACGCAGGGGTGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCT
1 CAGCAGCAGGAT-GGATAGCACGCAGGAG-GGATCGGGCCGATCCCCGGCTTGCACATTCTGCCT
** * * * * *
16190003 CTCCGATTGGCTGAGCGCTTGCATGCTCTTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCC
64 CTCCGACCGACTGAGCGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCAT-CC
*
16190068 CA-ATCTAAGCATACGGAGTTCATTCCCAATCGAAGATCAAACCAGATCGAGGGTT
128 CATATCTAAGCATACAGAGTTCATTCCCAATCGAAGATCAAACCAGATCGAGGGTT
16190123 ACGGTAGTAG
Statistics
Matches: 157, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
196 22 0.14
197 132 0.84
198 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (196 bp):
CAGCAGCAGGATGGATAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT
CCGACCGACTGAGCGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCAT
ATCTAAGCATACAGAGTTCATTCCCAATCGAAGATCAAACCAGATCGAGGGTTGCGATAGCAGAA
C
Found at i:16191455 original size:159 final size:158
Alignment explanation
Indices: 16191180--16191641 Score: 489
Period size: 159 Copynumber: 2.9 Consensus size: 158
16191170 GACCAGACCA
* * * * * *
16191180 AGGGTTGTGGTAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTC
1 AGGGTTGGGGCAGCAGGACCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTC
* * * * * *
16191245 TGCCTCTCTGGCCAGCTAAGCACCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* *
16191310 ATTCCATGTCTAAGCCCTAG-CCGGATCG
131 ATTCCATGTCTAAGCCC-AGACAGAATCG
* * * * *
16191338 AGGGTTGTGGCAGC-GGTACCGGTAGCACGCAGAGAGGGATCGGGTCAATCCCCGGCTTGCGCAT
1 AGGGTTGGGGCAGCAGG-ACCGATAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCAT
* * * ** * *
16191402 TATGCCTCTCCAGCCGGCTCAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
64 TCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* **
16191467 TTATTCCCA-GTCTAAGATCAGACAGAATCG
129 TCATT-CCATGTCTAAGCCCAGACAGAATCG
* * * * ** *
16191497 AGGGTTGGGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTATGCGTTC
1 AGGGTTGGGGCAGCAGGACCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTC
* * * * * *
16191562 TGCCTCTCCGGTCGACTGAGCACCCGCACGCTCATCTCGTGGGTTGGCTTAGGAATACGGAGTTC
66 TGCCTCTCCGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
16191627 ATTCCATGTCTAAGC
131 ATTCCATGTCTAAGC
16191642 ATACGGTGTT
Statistics
Matches: 245, Mismatches: 53, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 115 0.47
159 120 0.49
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGGTTGGGGCAGCAGGACCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTC
TGCCTCTCCGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCAGACAGAATCG
Found at i:16191614 original size:158 final size:156
Alignment explanation
Indices: 16191141--16191640 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 156
16191131 CAGTCTAAGT
* * * * * *
16191141 ATACGGAGTTGATTCCCA-GTATAAGATCGGACCAGACCAAGGGTTGTGGTAGTAGGATCGATAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGATCGAGGGTTGTGGTAGCAGGATCGATAG
* * * *
16191205 CACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTAAGCACCC
64 CACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGA-CTAAGCACCC
* * *
16191270 GTACGCCCGTTTTGTGGGTTGGCTTAGGC
128 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * * * * *
16191299 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGC-GGTACCGGTAG
1 ATACGGAGTTCATTCCATGTCTAAGATC-AGACAGATCGAGGGTTGTGGTAGCAGG-ATCGATAG
* * * * * * * **
16191363 CACGCAGAGAGGGATCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGTGCC
64 CACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GGCGACTAAGCACC
* *
16191428 CGCACGCTTGTTTCGTGGGTTGACTTAGGC
127 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * *
16191458 ATACGGAGTTTATTCCCA-GTCTAAGATCAGACAGAATCGAGGGTTGGGGTAGCAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACAG-ATCGAGGGTTGTGGTAGCAGGATCGATAG
* ** * *
16191522 CACGCAGGGGGGACCGGGTCGATCCCCGACTTATGCGTTCTGCCTCTCCGGTCGACTGAGCACCC
64 CACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGACTAAGCACCC
* * *
16191587 GCACGCTCATCTCGTGGGTTGGCTTAGGA
128 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
16191616 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
16191641 CATACGGTGT
Statistics
Matches: 270, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 9 0.03
158 139 0.51
159 115 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACAGATCGAGGGTTGTGGTAGCAGGATCGATAGCA
CGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGACTAAGCACCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:16191652 original size:26 final size:26
Alignment explanation
Indices: 16191616--16191666 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16191606 TGGCTTAGGA
16191616 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
*
16191642 ATACGGTGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16191667 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16192016 original size:26 final size:25
Alignment explanation
Indices: 16191981--16192032 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16191971 GTTGACTTAG
16191981 GCATAGGAGTTCATCCCCAGCCTAA
1 GCATAGGAGTTCATCCCCAGCCTAA
* *
16192006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATCCCCAGCCTAA
16192032 G
1 G
16192033 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCCAGCCTAA
Found at i:16192229 original size:353 final size:360
Alignment explanation
Indices: 16191512--16192229 Score: 814
Period size: 353 Copynumber: 2.0 Consensus size: 360
16191502 TGGGGTAGCA
* * * * *
16191512 GGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTATGCGTTCTGCCTCTCCGGTCGA
1 GGATCGACAGCACGCAGGGGGGACCGGGTCGAACCCCGACTTACGCATTATGCCTCTCCGGCCGA
* * *
16191577 CTGAGCACCCGCACGCTCATCTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGC
66 CTGAGCACCCGCACGCTCATCTCGTGGGTTGACTTAGGAATACGGAGTTCATCCCATGCCTAAGC
* *
16191642 ATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAATAGTAGGACCAGTAGC
131 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT---ATAGTAGGACC---AGC
* * * * ** *
16191707 AAGATTGGTAACATGCAGGGGGGATCAGGTCGATCCCCGACTTGTGCATTCTACCTTTCCCGCCT
190 AAGATCGGTAACATGCAGGGGGGACCAGGCCGATCACCGACTTAAGCATTCTACCTCTCCCGCCT
*
16191772 ATTGAGCACCCGCACGCTCATTCCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
255 ACTGAGCACCCGCACGCTCATTCCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * *
16191837 CCCCAGCCGAACTGAAGGTTGTGGCAGTAGGATCGGCAGCG
320 CCCCAGCCGAACCGAAGGTTGTGGCAGCAGGACCGGCAGCG
* * *
16191878 GGATCGACAGCATGCAGAGGGGGACCGGG-CTGAACCTCGGCTTACGCATTATGCCTCTCCGGCC
1 GGATCGACAGCACGCAG-GGGGGACCGGGTC-GAACCCCGACTTACGCATTATGCCTCTCCGGCC
* * * * * * *
16191942 TACTGAGCGCCCTCACGTTGATTTCGTGGGTTGACTTAGGCATA-GGAGTTCATCCCCA-GCCTA
64 GACTGAGCACCCGCACGCTCATCTCGTGGGTTGACTTAGGAATACGGAGTTCAT-CCCATGCCTA
*
16192005 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T-GT-GG-CC-GCAGG
128 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATAGTAGGACCAGCAAG
* * * * * *
16192064 ATCGGTAGCATGCA-GGGGGACC-GAGCCGATCATCGACTTAAGCATTCTGCCTCT-CTGGCTGG
193 ATCGGTAACATGCAGGGGGGACCAG-GCCGATCACCGACTTAAGCATTCTACCTCTCCCGCCT-A
* * * * **
16192126 CTGAGCACCCGCATGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
256 CTGAGCACCCGCACGCTC-ATTCCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * *
16192190 CCCCAGCCGGACCGAGGGTTGTTGCAGCAGGACCGGCAGC
320 CCCCAGCCGAACCGAAGGTTGTGGCAGCAGGACCGGCAGC
16192230 ACACAGAGGG
Statistics
Matches: 299, Mismatches: 47, Indels: 25
0.81 0.13 0.07
Matches are distributed among these distances:
352 6 0.02
353 119 0.40
354 16 0.05
358 2 0.01
359 2 0.01
360 2 0.01
361 1 0.00
365 1 0.00
366 74 0.25
367 76 0.25
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (360 bp):
GGATCGACAGCACGCAGGGGGGACCGGGTCGAACCCCGACTTACGCATTATGCCTCTCCGGCCGA
CTGAGCACCCGCACGCTCATCTCGTGGGTTGACTTAGGAATACGGAGTTCATCCCATGCCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATAGTAGGACCAGCAAGATC
GGTAACATGCAGGGGGGACCAGGCCGATCACCGACTTAAGCATTCTACCTCTCCCGCCTACTGAG
CACCCGCACGCTCATTCCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
CCGAACCGAAGGTTGTGGCAGCAGGACCGGCAGCG
Found at i:16193011 original size:158 final size:158
Alignment explanation
Indices: 16192843--16193381 Score: 566
Period size: 158 Copynumber: 3.4 Consensus size: 158
16192833 TCCGATCGGT
* *
16192843 TGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
16192908 CCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCTCG
66 CCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCG
*
16192973 GCTTGCCCATTCTGCCTCTCCTACCAGC
131 GCTTGCACATTCTGCCTCTCCTACCAGC
* * *
16193001 TGAGCGCCCGCGCGCCTGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * *
16193066 CCAGCCGGACCGAGTGTTGTGGTAGCGGGACCGATAGCACGTAGAGGGGGACCGGGTCGATCCCC
66 CCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCC
* * * * * *
16193131 AGCTAGCACACTATGCCTCTCCGACCGGC
130 GGCTTGCACATTCTGCCTCTCCTACCAGC
* * ***
16193160 TCAGCGCCCGCACGCTCGTTTCATGGGTTGAG-TTAGGCATACAAAGTTCATTCCCA-GTCTAAG
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTG-GCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
** * * * * * * ** *
16193223 -ATCAGACCGGACCGAGGGTTGCGACAGTAGAATCAATAGCACGCAAGGGGGATTGGGCCGGTCC
64 CCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACGCAGGGGGGACCGGGCCGATCC
* *** * *
16193287 CCGACTTATGCATTCTGCCTCTCCGGT-CGA-T
128 CCGGCTTGCACATTCTGCCTCTCC--TACCAGC
* * * *
16193318 TGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16193382 ATATGGAGTT
Statistics
Matches: 308, Mismatches: 64, Indels: 17
0.79 0.16 0.04
Matches are distributed among these distances:
157 4 0.01
158 182 0.59
159 118 0.38
160 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCG
GCTTGCACATTCTGCCTCTCCTACCAGC
Found at i:16193390 original size:26 final size:26
Alignment explanation
Indices: 16193354--16193406 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16193344 GTTGGCTTAG
16193354 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16193380 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16193406 G
1 G
16193407 GTCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16193664 original size:13 final size:13
Alignment explanation
Indices: 16193646--16193670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16193636 TGCTCATTAT
16193646 GCCTCTCCGGCTA
1 GCCTCTCCGGCTA
16193659 GCCTCTCCGGCT
1 GCCTCTCCGGCT
16193671 GGCTGAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGGCTA
Found at i:16194090 original size:26 final size:26
Alignment explanation
Indices: 16194061--16194113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16194051 GTGGACTTAG
*
16194061 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16194087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16194113 G
1 G
16194114 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16194115 original size:351 final size:353
Alignment explanation
Indices: 16193659--16194311 Score: 850
Period size: 351 Copynumber: 1.8 Consensus size: 353
16193649 TCTCCGGCTA
16193659 GCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGAAATATGGAGTTCA
1 GCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTA-G-TGACTTAGAAATATGGAGTTCA
*
16193724 TCCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGA
64 TCCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
* *** * ** *
16193789 GTAAGATCGACAGCACGCA-GGGTGGACTGGGTCGGTCCCTAG-CTTGCGAATTCTGTCTCTCTG
129 GTAAGATCGACAGCACGCATGGG-GGACCGAACCGATCCC-AGACTTGCGAATTCTACCTCTCCG
** ** *
16193852 GCCAACTGAGTGCCCGTACG-CATGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CAATG
192 GCCAACTGAGCACCCACACGAC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAA-G
*
16193915 TCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGA
255 TCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGA
16193980 GGGGGACCGGGTTGATCCTCGGCTTACGCATTAT
320 GGGGGACCGGGTTGATCCTCGGCTTACGCATTAT
* * * * **
16194014 GCCTCTCCGGTTGGCTGAGCGCCTGGACGCTCGTTTCGT-G-GACTTAGGCATATGGAGTTCATC
1 GCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTAGTGACTTAGAAATATGGAGTTCATC
* ** * *
16194077 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGACAGT
66 CCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGT
* * * * * * *
16194142 AGGATCGATAGCACGCATGGGGGACCGAACCGATCCCCGACTTGTGCATTCTACCTCTCCGGTCG
131 AAGATCGACAGCACGCATGGGGGACCGAACCGATCCCAGACTTGCGAATTCTACCTCTCCGGCCA
* ** *
16194207 GCTGAGCACCCACACGACCGTTTCATGGGTTGGCTTAGTTATAGGGATTTCATTCCAAGTCTAAG
196 ACTGAGCACCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
* * *
16194272 CCCTAGCCGGACCAAGGGTTGTGGCAGCCGGACCGTCAGC
261 CCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGACAGC
16194312 ACGCAGAGTG
Statistics
Matches: 254, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
350 1 0.00
351 210 0.83
352 7 0.03
353 1 0.00
355 35 0.14
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (353 bp):
GCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTAGTGACTTAGAAATATGGAGTTCATC
CCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGT
AAGATCGACAGCACGCATGGGGGACCGAACCGATCCCAGACTTGCGAATTCTACCTCTCCGGCCA
ACTGAGCACCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
CCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGA
CCGGGTTGATCCTCGGCTTACGCATTAT
Found at i:16194601 original size:26 final size:26
Alignment explanation
Indices: 16194562--16194640 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
16194552 GTTGGCTTAG
*
16194562 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16194588 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
16194614 GCTTACGTAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16194640 G
1 G
16194641 ATTGGATTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16195986 original size:158 final size:159
Alignment explanation
Indices: 16195767--16196341 Score: 556
Period size: 158 Copynumber: 3.6 Consensus size: 159
16195757 GAGACCGGGT
* * * * **
16195767 CGATCCTCAGCTTACGCATTCTGCCTCTCCGATCGATTGAGCGCCCGCACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
*
16195832 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAG-CTAGACCGACGG-TTGTGGCAGC
66 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCCAGTC-AGACCGA-GGATTGTGGCAGC
* *
16195895 GAGATCGACAGCATGCAGAAGGGGATC-GAC
129 GAGATCGACAGCAGGCAGAAGGGGACCAGAC
* * * * *
16195925 CGATCCCCGGCTTGCGTATTATGCCTCTCCAATCGGCTGAACGCCCGTACACCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* * *
16195990 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAGCGAGGATTGTGGCAGCGG
66 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGATTGTGGCAGCGA
* * **
16196055 GATCGACAGCAGGTAGAGGGGGACCAGGT
131 GATCGACAGCAGGCAGAAGGGGACCAGAC
* * *
16196084 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* *** * * *** *
16196149 TGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAGA-TTGGATCGGACCGAGGGTTACAGTAG
66 TGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGACCCAG-TCAGACCGAGGATTGTGGCAG
* * *
16196211 C-AGGATCGATAGCACGCAG-AGGGGATC-GAGC
128 CGA-GATCGACAGCAGGCAGAAGGGGACCAGA-C
* * * * * * ** * * * * *
16196242 TGGTCCCTGGCTTGTGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGC
1 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* *
16196307 TGGCTTGGGCATACGGAGTTCATTCCATGTCTAAG
66 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
16196342 CATACGGAGT
Statistics
Matches: 341, Mismatches: 66, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 216 0.63
159 115 0.34
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCCAGTCAGACCGAGGATTGTGGCAGCGA
GATCGACAGCAGGCAGAAGGGGACCAGAC
Found at i:16196339 original size:317 final size:318
Alignment explanation
Indices: 16195753--16196342 Score: 704
Period size: 317 Copynumber: 1.9 Consensus size: 318
16195743 AGCAGCACAT
* * * * *
16195753 AGGGGAGACCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGATCGATTGAGCGCCCGCACG
1 AGGGGAGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACG
* * **
16195818 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCTAGACCGAC
66 CCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAGCTAGACCGAC
*** * * *
16195883 GGTTGTGGCAGCGAGATCGACAGCATGCAGAAGGGGATCGACCGATCCCCGGCTTGCGTATTATG
131 GGTTACAGCAGCGAGATCGACAGCACGCAGAAGGGGATCGACCGATCCCCGGCTTGCGCATTATA
* * *
16195948 CCTCTCCAATCGGCTGAACGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT
196 CCTCTCCAACCGGCTGAACGCCCGCACACCCGTTTCATGGGCTGGCTTAGGCATAAGGAGTTCAT
16196013 TCCATGTCTAAGCCCCAGTCAGAGCGAGGATTGTGGCAGCGGGATCGACAGCAGGTAG
261 TCCATGTCTAAGCCCCAGTCAGAGCGAGGATTGTGGCAGCGGGATCGACAGCAGGTAG
* * *
16196071 AGGGG-GACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACG
1 AGGGGAGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACG
* *** * *
16196135 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGA-TTGGATCGGACCG
66 CCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCCAGCT-AGACCG
* * * * * * *
16196198 AGGGTTACAGTAGC-AGGATCGATAGCACGCAG-AGGGGATCGAGCTGGTCCCTGGCTTGTGCAT
129 ACGGTTACAGCAGCGA-GATCGACAGCACGCAGAAGGGGATCGA-CCGATCCCCGGCTTGCGCAT
* ** ** ** * * * *
16196261 TCTACCTCTCCGGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGCTGGCTTGGGCATACGGAGT
192 TATACCTCTCCAACCGGCTGAACGCCCGCACACCCGTTTCATGGGCTGGCTTAGGCATAAGGAGT
16196326 TCATTCCATGTCTAAGC
257 TCATTCCATGTCTAAGC
16196343 ATACGGAGTT
Statistics
Matches: 223, Mismatches: 45, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
316 13 0.06
317 202 0.91
318 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (318 bp):
AGGGGAGACCAGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACG
CCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAGCTAGACCGAC
GGTTACAGCAGCGAGATCGACAGCACGCAGAAGGGGATCGACCGATCCCCGGCTTGCGCATTATA
CCTCTCCAACCGGCTGAACGCCCGCACACCCGTTTCATGGGCTGGCTTAGGCATAAGGAGTTCAT
TCCATGTCTAAGCCCCAGTCAGAGCGAGGATTGTGGCAGCGGGATCGACAGCAGGTAG
Found at i:16196344 original size:26 final size:26
Alignment explanation
Indices: 16196315--16196367 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16196305 GCTGGCTTGG
16196315 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16196341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16196367 G
1 G
16196368 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16196726 original size:26 final size:26
Alignment explanation
Indices: 16196696--16196748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16196686 GTTGACTTAG
*
16196696 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16196722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16196748 G
1 G
16196749 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16197098 original size:158 final size:157
Alignment explanation
Indices: 16196722--16197101 Score: 354
Period size: 158 Copynumber: 2.4 Consensus size: 157
16196712 CCCAGTCTAA
* * * *
16196722 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGGGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * * **
16196787 GCACGCTGGAGGGACTGAGCGATCCCCAGCTTGCATATTCTGCCTCTCTGGCCGACTGAGTGCCC
66 GCACGCAGGAGGGACCGAGCGATCCACAGCTTGCACATTATGCCTCTCCGACAGACTCAACGCCC
* *
16196852 GCACGCCCATCTCATGGGTTGGCTTAG
131 GAACGCCCATCTCATGGGTTGACTTAG
* ** * * * *
16196879 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACTAAGGATTGTGGTAGC-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGCGGTAGCAG-GATCG
* * * ** * *
16196941 GCAGCACGCAGAGGGGGACCGGGCCGATCCATGGCTTGCGCATTATGCCTCTCCGATAG-CTCAA
63 ACAGCACGCAG-GAGGGACCGAG-CGATCCACAGCTTGCACATTATGCCTCTCCGACAGACTCAA
* * * *
16197005 CGCCCGAACGCTCATTTCGTGGTTTGACTTAG
126 CGCCCGAACGCCCATCTCATGGGTTGACTTAG
* *
16197037 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
16197102 ACACATAAGG
Statistics
Matches: 171, Mismatches: 44, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.02
157 54 0.32
158 84 0.49
159 29 0.17
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGAGGGACCGAGCGATCCACAGCTTGCACATTATGCCTCTCCGACAGACTCAACGCCC
GAACGCCCATCTCATGGGTTGACTTAG
Found at i:16197757 original size:26 final size:26
Alignment explanation
Indices: 16197709--16197759 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16197699 TTGGCTTAGT
**
16197709 CATACGGAGTTCATTCCTTGTCTAAC
1 CATACGGAGTTCATTCCGAGTCTAAC
16197735 CATACGGAGTTCATTCCGAGTCTAA
1 CATACGGAGTTCATTCCGAGTCTAA
16197760 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCGAGTCTAAC
Found at i:16198823 original size:158 final size:158
Alignment explanation
Indices: 16198401--16199138 Score: 494
Period size: 158 Copynumber: 4.7 Consensus size: 158
16198391 GGCTGAGCAT
* * * * *
16198401 CCACATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAACATC-AGACC
1 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGA-ATC
* * * * * * *
16198465 GGATCGAGGGTTGCGGTAGAAGGATCGGCAGCACGTAGGGGGGACCGAGCCTATCCTC-AGCTTG
65 GGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTG
** * * ** * * *
16198529 CGTATTCTGCCTCTCTGGTCGGTTGAGCAC
129 CACATTATGCCTCTCCGACCGGCTCAGCGC
* * * * * ** * **
16198559 CCGCATGCCCGTTTCGTGCGTTGCCTTAGGCATA-GGAAGTTCATT-CCATGTCTAAGCCCCAGC
1 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATATAG-AGTTCATTCCCA-GTCTAAGATCGAAT
** * * * ** * * * * *
16198622 CAAATCGAGGGTTGTGG-AGTGGGACCGATAGCATGCAGAGGGGGATCGAGCCGATCCCCAACTT
64 CGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTT
*
16198686 GCACATTATGCCTCTCCGACCGGCTCAGCAC
128 GCACATTATGCCTCTCCGACCGGCTCAGCGC
* * *
16198717 CCACACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGAT-G
1 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGAATCG
* * ** *
16198781 AGACCAAGGGTTGCGATAGCAGGATCGACAGCACACAGGGGGGGACCG-GAATGGTCCCCGACTT
66 -GACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCA-GGGGGGACCGAG-CCGATCCCCGACTT
* * * ** * *
16198845 ACGCATTCTGCCTCTCCGACCGAATGAGTGC
128 GCACATTATGCCTCTCCGACCGGCTCAGCGC
* * * ** * * *
16198876 TCGCATG-TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCTCTAGTC
1 CCACATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCA-GTCTAAGATCGAATC
* * * * ** * ** *
16198939 GGACTGAA-GGTTGTGGCAGCGGGATCGACAGC-CTGCAGAAAGGGACCGGGCCGATCTTCGGCT
65 GGAC-CAAGGGTTGCGGTAGCAGGATCGACAGCAC-GCAG-GGGGGACCGAGCCGATCCCCGACT
* **
16199002 TGCACATTACGCCTCTCCGACTAGCTCAGCGC
127 TGCACATTATGCCTCTCCGACCGGCTCAGCGC
* * *
16199034 CCGA-ATGCTTGTTTCGTGGGTTGACTTTA-ACATATTGAGTTCATTCCCAGTCTAAGATCGAAT
1 CC-ACATGCTCGTTTCGTGGGTTGAC-TTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGAAT
* *
16199097 CGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGG
64 CGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGG
16199139 TGAATCGAGC
Statistics
Matches: 434, Mismatches: 123, Indels: 46
0.72 0.20 0.08
Matches are distributed among these distances:
157 23 0.05
158 266 0.61
159 137 0.32
160 8 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
CCACATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGAATCG
GACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCA
CATTATGCCTCTCCGACCGGCTCAGCGC
Found at i:16199083 original size:317 final size:317
Alignment explanation
Indices: 16198396--16199249 Score: 776
Period size: 317 Copynumber: 2.7 Consensus size: 317
16198386 TGGTCGGCTG
* * ** * * * *
16198396 AGCATCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAACATC-
1 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGACATATAGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * ** * * *
16198460 AGACCGGATCGAGGGTTGCGGTAGAAGGATCGGCAGCACGTAGGGGGG-ACCGAGCCT-ATCCTC
66 A-ATCGGACCAAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGAACCGAG-ATGGTCCCC
* * * * * ** * * ** * * *
16198523 AGCTTGCGTATTCTGCCTCTCTGGTCGGTTGAGCACCCGCATGCC-CGTTTCGTGCGTTGCCTTA
129 AACTTACGCATTCTACCTCTCCGACCAGATGAGTGCCCGCA-CCCTCGTTTCGTGGGTTGGCTTA
* * *
16198587 GGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTGGAGTGGGACCGATA
193 GGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAAGGTTGTGGAGCGGGACCGACA
** * * *
16198652 GCATGCAGAGGGGGATCGAGCCGATCCCCAACTTGCACATTATGCCTCTCCGACCGGCTC
258 GCATGCAGAAAGGGACCGAGCCGATCCCCAACTTGCACATTACGCCTCTCCGACCAGCTC
*
16198712 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCG
1 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGACATATAGAGTTCATTCCCAGTCTAAGATCG
* * *
16198777 GAT-GAGACCAAGGGTTGCGATAGCAGGATCGACAGCACACAGGGGGGGACCG-GAATGGTCCCC
66 AATCG-GACCAAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGAACCGAG-ATGGTCCCC
* * * **
16198840 GACTTACGCATTCTGCCTCTCCGACC-GAATGAGTGCTCGCA-TGTCGTTTCGTGGGTTGGCTTA
129 AACTTACGCATTCTACCTCTCCGACCAG-ATGAGTGCCCGCACCCTCGTTTCGTGGGTTGGCTTA
* * * * ** *
16198903 GGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGTCGGA-CTGAAGGTTGTGGCAGCGGGATCGA
193 GGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAAATC-GAAGGTTGTGG-AGCGGGACCGA
* * ** ** *
16198967 CAGCCTGCAGAAAGGGACCGGGCCGATCTTCGGCTTGCACATTACGCCTCTCCGACTAGCTC
256 CAGCATGCAGAAAGGGACCGAGCCGATCCCCAACTTGCACATTACGCCTCTCCGACCAGCTC
* * * * *
16199029 AGCGCCCGA-ATGCTTGTTTCGTGGGTTGACTTTA-ACATATTGAGTTCATTCCCAGTCTAAGAT
1 AGCACCC-ACACGCTCGTTTCATGGGTTGAC-TTAGACATATAGAGTTCATTCCCAGTCTAAGAT
* * * * * * **
16199092 CGAATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGTGAATCGAGCTGGTCCTT
64 CGAATCGGACCAAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGAACCGAGATGGTCCCC
* ** * * *
16199157 AACTTATGCATTCTACCTCTCCGGTCAGTTGAGTGCCCGTACCCTCGTTTCGTGGGTTGGCTTAT
129 AACTTACGCATTCTACCTCTCCGACCAGATGAGTGCCCGCACCCTCGTTTCGTGGGTTGGCTTAG
*
16199222 GCATACGAAGTTCATTCCATGTCTAAGC
194 GCATAGGAAGTTCATTCCATGTCTAAGC
16199250 ATACAGAGTT
Statistics
Matches: 437, Mismatches: 87, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
315 2 0.00
316 156 0.36
317 226 0.52
318 53 0.12
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (317 bp):
AGCACCCACACGCTCGTTTCATGGGTTGACTTAGACATATAGAGTTCATTCCCAGTCTAAGATCG
AATCGGACCAAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGAACCGAGATGGTCCCCAA
CTTACGCATTCTACCTCTCCGACCAGATGAGTGCCCGCACCCTCGTTTCGTGGGTTGGCTTAGGC
ATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAAGGTTGTGGAGCGGGACCGACAGCA
TGCAGAAAGGGACCGAGCCGATCCCCAACTTGCACATTACGCCTCTCCGACCAGCTC
Found at i:16199259 original size:26 final size:26
Alignment explanation
Indices: 16199222--16199274 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16199212 GTTGGCTTAT
16199222 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16199248 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16199274 G
1 G
16199275 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16199789 original size:26 final size:26
Alignment explanation
Indices: 16199753--16199860 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
16199743 GGGGTTGGCT
16199753 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
* *
16199779 TAAGCATACGGAGTTTATGCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
16199805 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
16199831 CAAGCATACGGAGTTCATTCC-TAGTC
1 TAAGCATACGGAGTTCATTCCAT-GTC
16199857 TAAG
1 TAAG
16199861 AGTTTGAGCC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 1 0.01
26 74 0.99
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:16200608 original size:26 final size:26
Alignment explanation
Indices: 16200562--16200614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16200552 GTTGACTTAG
*
16200562 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
16200588 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16200614 G
1 G
16200615 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16201294 original size:26 final size:26
Alignment explanation
Indices: 16201246--16201298 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201236 GTTGGCTTAG
*
16201246 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
16201272 GCATACGTAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
16201298 G
1 G
16201299 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:16201775 original size:26 final size:26
Alignment explanation
Indices: 16201746--16201798 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201736 GTTGGCTTAG
*
16201746 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16201772 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16201798 G
1 G
16201799 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16201921 original size:196 final size:186
Alignment explanation
Indices: 16201588--16202199 Score: 646
Period size: 184 Copynumber: 3.3 Consensus size: 186
16201578 GTTAACTTAG
* * * * * * * *
16201588 GCATACGAACTTCATTCCCAGTCTAAGATCGGATTGGGCTGAGGGTTG-T--GACAACAGGATTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTTGCGGCAGCAGGATTG
* * * **
16201650 ATAGCATGCAAGGGGGGACCGGGCCGGTCCCCGA-TTACGCATTCTGCCTCTCCGACTGACTGAG
66 ATAGCATGC-AGGGGGGATCGGGCCGATCCCCGACTT-TGCATTCTGCCTCTCCGGTTGACTGAG
* * * *
16201714 CACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
129 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16201772 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTAGTAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGT--T-GC-GG--C---A
* * * *
16201837 GCAGGATCGACAGCATACAGGGGGGATCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGGT
57 GCAGGATTGATAGCATGCAGGGGGGATCGGGCCGATCCCCGACTT-TGCATTCTGCCTCTCCGGT
* * * **
16201902 TGGCTGAGCGCCCGCATGCTCGTTTCGTGGATTGGCTTAGGCTTACAAAGTTCATTCCATGTCTA
121 TGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
16201967 A
186 A
* * * *
16201968 GCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGA-GG--GTTGCGGCAGCAGGATTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTTGCGGCAGCAGGATTG
* * * * * * *
16202030 GTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTCGTC-TTCTGCCTTTCCGGTCGACTGAG
66 ATAGCATGCAGGGGGGATCGGGCCGATCCCCGACTTT-G-CATTCTGCCTCTCCGGTTGACTGAG
* * ** *
16202094 TGCCCACACACTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
16202152 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTG
16202200 CGACAGTAAG
Statistics
Matches: 352, Mismatches: 58, Indels: 33
0.79 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 185 0.53
185 3 0.01
187 3 0.01
189 2 0.01
190 2 0.01
191 2 0.01
193 3 0.01
195 23 0.07
196 128 0.36
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (186 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTTGCGGCAGCAGGATTG
ATAGCATGCAGGGGGGATCGGGCCGATCCCCGACTTTGCATTCTGCCTCTCCGGTTGACTGAGCG
CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16202145 original size:184 final size:190
Alignment explanation
Indices: 16201691--16202349 Score: 609
Period size: 196 Copynumber: 3.4 Consensus size: 190
16201681 CGATTACGCA
* * * ** * * * **
16201691 TTCTGCCTCTCC-GACTGACTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATATGGA
1 TTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACAGA
* * * *
16201755 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTT-
65 GTTCATTCCATGTCTAAGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTC
* * * ** *** * **
16201819 GTAGTAGCAGGACCAGTAGCAGGATCGACAGCATACAGGGGGGATCGGGCCGATCCCTGAC-TT-
130 G-A-CAG-A-GA-CAGCA--AGGATTGGTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTC
16201882 GTGC
188 GT-C
* ** * * * *
16201886 ATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCATGCTCGTTTCGTGGATTGGCTTAGGCTTACAAA
1 -TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACAGA
16201951 GTTCATTCCATGTCTAAGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTT-
65 GTTCATTCCATGTCTAAGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTC
16202015 G-C-G-G-CAGC-AGGATTGGTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTCGTC
130 GACAGAGACAGCAAGGATTGGTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTCGTC
* * * * *
16202071 TTCTGCCTTTCCGGTCGACTGAGTGCCCACACACTCGTTTCGTGGGTTGGTTTAGGCATACGGAG
1 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACAGAG
* * * * * *
16202136 TTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGC
66 TTCATTCCATGTCTAAGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTT-C
* ** * * *
16202201 GACAGTAAGACCAGCAGAAGGATTGGTAGCACGTAGGGGGGATCAAGTCGATCCTCAGCTTCCGT
130 GACAG--AGA-CAGC--AAGGATTGGTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTCGT
*
16202266 A
190 C
* * * *
16202267 TTCTGCCTCTCTGGTCGGTTGAGCACCCGCACACTCGCTTCGTGGGTTGGTTTAGGCATACAGAG
1 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACAGAG
*
16202332 TTCATTCCATCTCTAAGC
66 TTCATTCCATGTCTAAGC
16202350 CCCAGTTGGA
Statistics
Matches: 387, Mismatches: 61, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
184 142 0.37
185 3 0.01
186 3 0.01
187 4 0.01
188 1 0.00
189 1 0.00
191 1 0.00
192 1 0.00
193 4 0.01
196 226 0.58
197 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (190 bp):
TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGTTTAGGCATACAGAG
TTCATTCCATGTCTAAGCATACGGACTTCATTCCCAATCTAAGATTGGACCAGACCGAGGGTTCG
ACAGAGACAGCAAGGATTGGTAGCACGGAGGGGGGATCGGGTCGATCCCCAACTTTCGTC
Found at i:16202162 original size:26 final size:26
Alignment explanation
Indices: 16202126--16202178 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16202116 GTTGGTTTAG
16202126 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16202152 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16202178 G
1 G
16202179 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16202537 original size:26 final size:26
Alignment explanation
Indices: 16202508--16202558 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16202498 TGACTTAGGA
16202508 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* *
16202534 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
16202559 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:16202908 original size:159 final size:158
Alignment explanation
Indices: 16202664--16203032 Score: 366
Period size: 158 Copynumber: 2.3 Consensus size: 158
16202654 GAGCGCCCGT
* * * *
16202664 ACGCCTGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACGAGACC
1 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACGAGACC
** * * * *
16202729 GAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGAACAGGCT-GATCCCTGACCTACGCA
66 GAGGGTTGCAGCAGCAGGATCGACAGCACGC--AGGGGGAACAGGCTCGATCCCCGACCTACACA
*
16202793 TTATGCCTCTCCGGCCAACTCAGCACCCAA
129 TTATGCCTCTCCGACCAACTCAGCACCCAA
* ****
16202823 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TGGTCTAAGATTGGACTG-GA
1 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCCAAC-GAGA
* * * * * * * *
16202886 CCGAGGGTTGCAGTAGTAGGATCGACAGCATGCAGGGGGAACCGGTTCGATCCCCGGCTTGCACA
64 CCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGAACAGGCTCGATCCCCGACCTACACA
* * * *** * **
16202951 TTCTGCCTCTTCGATCGGTTGAGCACCCGC
129 TTATGCCTCTCCGACCAACTCAGCACCCAA
* *
16202981 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16203033 CATACGGAGT
Statistics
Matches: 170, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 12 0.07
158 80 0.47
159 77 0.45
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACGAGACC
GAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGAACAGGCTCGATCCCCGACCTACACATT
ATGCCTCTCCGACCAACTCAGCACCCAA
Found at i:16203056 original size:26 final size:26
Alignment explanation
Indices: 16203006--16203058 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16202996 GTTGGCTTAG
*
16203006 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16203032 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16203058 G
1 G
16203059 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16203232 original size:26 final size:26
Alignment explanation
Indices: 16203202--16203254 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16203192 GTTGACTTAG
16203202 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
16203228 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16203254 G
1 G
16203255 ATCGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16205513 original size:26 final size:26
Alignment explanation
Indices: 16205484--16205536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16205474 GTTGGCTTAG
* *
16205484 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16205510 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16205536 G
1 G
16205537 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16206442 original size:158 final size:157
Alignment explanation
Indices: 16206112--16206480 Score: 359
Period size: 158 Copynumber: 2.3 Consensus size: 157
16206102 AAGGTTACGA
* * * * * * * **
16206112 CAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCGGTTGAGCG
1 CAGCACGTAGAGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCAGCTCAGAA
** * * *
16206177 CCCGCATTCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCAGCCA
*** *
16206242 GACCGAGGGTTGTGGCAGCGAGACCTG
131 GACCGAGGGTTACAGCAGAGAGACCTG
* *
16206269 CAGCACGCAGAAGGGGATCGAGCCGATCCCCGGCTTGTGCATTGTGCCTTCTCCGGTCAGCTCA-
1 CAGCACGTAG-AGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCC-TCTCCGGTCAGCTCAG
* * *
16206333 AACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCA-GTCTAAGATCAG
64 AACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGAGAGTTCATT-CCATGTCTAAGACCAG
* ** *
16206397 ACCGGAGTGAGGGTTACAGCAGTAG-GA-TTG
128 -CCAGACCGAGGGTTACAGCAG-AGAGACCTG
* * * * * *
16206427 ATAGCACGTAGAGGGGATCGAGTCGGTCCCTGACTTGCGCATTCTGCCTCTCCG
1 -CAGCACGTAGAGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
16206481 ACCGACTAAG
Statistics
Matches: 171, Mismatches: 35, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 15 0.09
158 115 0.67
159 40 0.23
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CAGCACGTAGAGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCAGCTCAGAA
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCAGCCA
GACCGAGGGTTACAGCAGAGAGACCTG
Found at i:16206920 original size:26 final size:26
Alignment explanation
Indices: 16206890--16206942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16206880 GTTGACATAG
*
16206890 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
* *
16206916 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
16206942 G
1 G
16206943 ATTGGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:16207579 original size:26 final size:26
Alignment explanation
Indices: 16207550--16207602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16207540 GTTGGCTTAG
16207550 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
16207576 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16207602 G
1 G
16207603 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16207930 original size:26 final size:26
Alignment explanation
Indices: 16207893--16207945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16207883 GTTGGCTTAG
*
16207893 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16207919 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16207945 G
1 G
16207946 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16210773 original size:26 final size:26
Alignment explanation
Indices: 16210737--16210786 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16210727 GGCTTAGGCA
*
16210737 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGAAGTTCATTCCCA-GTCTAAGCG
16210763 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16210787 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:16211121 original size:184 final size:184
Alignment explanation
Indices: 16210763--16211160 Score: 505
Period size: 184 Copynumber: 2.2 Consensus size: 184
16210753 TGTCTAAGCG
* * * * *
16210763 TACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAAGACTAGCAATA
1 TACGGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCAAGACTAGCAACA
* * * * *
16210828 GGATCGGCAGCATGCAGGGGCGGACCGAGCTGATCCTCGGCTTTCGCATTCTGCCTCTCCAGCTG
66 AGATCGACAGCATGCAGGGGCGGACCGAGCCGATCCTCGGCTTTCGCATTCCGCCTCTCCAGCCG
* * *
16210893 GCCTCTCTGACCTACTGAGCACCTGCACACTCATTTCATGGGTTGACTTAGGCA
131 GCCTCTCAGACCTACTGAACACCCGCACACTCATTTCATGGGTTGACTTAGGCA
** *
16210947 TACGGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGTAGC-AGAACTAGCAGC
1 TACGGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCAAG-ACTAGCAAC
* *
16211011 AAGATCGACAGCATGTAGGGGTGGACCGAGCCGATCCTCGGCTTTCGCATTCCGCCTCTCC-GAC
65 AAGATCGACAGCATGCAGGGGCGGACCGAGCCGATCCTCGGCTTTCGCATTCCGCCTCTCCAG-C
* * * * * *
16211075 CGGCCTTTTCAG-CCTATTGAACACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
129 CGGCC-TCTCAGACCTACTGAACACCCGCACACTCATTTCATGGGTTGACTTAGGCA
* **
16211131 TACGGAGCTCATCCTTAGTCTAAGATCGGA
1 TACGGAGTTCATCCCCAGTCTAAGATCGGA
16211161 CCGAGCTAAG
Statistics
Matches: 184, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 3 0.02
184 177 0.96
185 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
TACGGAGTTCATCCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGTAGCAAGACTAGCAACA
AGATCGACAGCATGCAGGGGCGGACCGAGCCGATCCTCGGCTTTCGCATTCCGCCTCTCCAGCCG
GCCTCTCAGACCTACTGAACACCCGCACACTCATTTCATGGGTTGACTTAGGCA
Found at i:16211317 original size:26 final size:26
Alignment explanation
Indices: 16211287--16211339 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16211277 GTTGACTTAG
16211287 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
16211313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16211339 G
1 G
16211340 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16212269 original size:159 final size:157
Alignment explanation
Indices: 16211908--16212569 Score: 586
Period size: 159 Copynumber: 4.2 Consensus size: 157
16211898 CCCAGTCTAA
* *
16211908 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGT-AGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTGA-GATCGA
* * * * * **
16211971 CAGCACTCAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGTTGGCTGAGCAT
64 CAGCACGCAGGGGGACCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
16212036 CCGCACGC-CTATTTCACGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * * *
16212065 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCGGTGAGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGTGAGATCGAC
* * * * *
16212129 AGCACGCAGAGGGAGATCGGGTCGATCCCCAGCTTGCATATTCTGCCTCTCCGGTTGGCTGAGCG
65 AGCACGCAG-GGG-GACCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCG
*
16212194 CCCGCACACTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16212224 GCATACGAAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCTG-GATTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG-TGAGATCGAC
* * * * * * * *
16212288 AGCACGTAGAGGGGGACCGAG-CTAATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGT
65 AGCACG--CAGGGGGACCGGGTC-GATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGC
*
16212352 GCCCGAACGCACGCTCGTTTCATGGGTTGGTTTAG
127 G-CC---CGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** *
16212387 GCATACGGAGTTCATTCCCA-GTCTAAAATGGGATTGGACCGAGGGTTGCGGTAGCAAAATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTGAGATCGAC
* * * * * * * * *
16212451 AGCACGTAGGAGGACCGGGTCGATCCCCGGCTTGCACATTCTGTCTCTCTGG-CCGATCAAGTGC
65 AGCACGCAGGGGGACCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCT-GAGCGC
* * *
16212515 CCGTACGCTCGTTTCGTGGGTTAGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16212544 GCATGC-GAGTTCATTCCATATCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16212570 CATATGGAGC
Statistics
Matches: 408, Mismatches: 77, Indels: 41
0.78 0.15 0.08
Matches are distributed among these distances:
155 3 0.01
156 19 0.05
157 86 0.21
158 5 0.01
159 158 0.39
160 14 0.03
161 40 0.10
162 1 0.00
163 79 0.19
164 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTGAGATCGACA
GCACGCAGGGGGACCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16212684 original size:26 final size:26
Alignment explanation
Indices: 16212655--16212705 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16212645 GTTGACTTAG
16212655 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
16212681 GCATACGGAGTTCATTCCTCGTCTA
1 GCATACGGAGTTCATCCCTAGTCTA
16212706 GGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16213174 original size:159 final size:159
Alignment explanation
Indices: 16212818--16213164 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 159
16212808 GCCCACACAG
* * *
16212818 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCCGGACCGAGGGTTGTGGTA
1 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
** *
16212883 GCTGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
66 GCAAGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
* * *
16212948 CTTGCTTAGCGTCCGCACACCCATTTTGT
131 CTCGCTTAACGTCCGCACACCCATTTCGT
* *
16212977 GGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCA
1 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
* * * * * ** *
16213042 GCAAGACCGGTAGCACGCATAGGGGGA-CAAGGTCGATCCTTGGCTTGCGCATTATGCCTCTTTG
66 GCAAGACCAGCAGCACGCAGAGGGGGATC-AGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCG
* * * *
16213106 GC-CGGTTCAATG-CCTGCACGCTCATTTCGT
130 GCTCGCTT-AACGTCC-GCACACCCATTTCGT
* * *
16213136 GGGTTGACTTATGCATACGGAGTTCATTC
1 GGGTTGGCTTAGGCATAGGGAGTTCATTC
16213165 GTAGTCTAAG
Statistics
Matches: 158, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 6 0.04
159 152 0.96
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
GCAAGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
CTCGCTTAACGTCCGCACACCCATTTCGT
Found at i:16214035 original size:26 final size:26
Alignment explanation
Indices: 16214006--16214058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16213996 GTTGACTTAG
* *
16214006 GCATACATAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16214032 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16214058 G
1 G
16214059 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16214414 original size:159 final size:158
Alignment explanation
Indices: 16214032--16214694 Score: 527
Period size: 159 Copynumber: 4.2 Consensus size: 158
16214022 CCCAGTCTAA
* * * * * * *
16214032 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGAATCGAGCGTTACGGCAG-TAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCT-GGATCGA
* * * * * * ** * *
16214095 TAGCATGTAGGGGGGACTGAG-CTGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGC
64 CAGCACGTAGAGGGGACCGGGTC-GATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
16214159 ACCCGCACGCCCATTTCCTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * *
16214190 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGC-GGTGAGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCTG-GATCGA
* * * * *
16214253 CAGCACGCAGAGGGAGATCGGGTCGATCCCCAGCTTGCATATTCTGCCTCTCCGGTTGGCTGAGC
64 CAGCACGTAGAGGG-GACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGC
*
16214318 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16214349 GCATACGAAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCTGGATTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCTGGATCGACA
* * * * * * * *
16214414 GCACGTAGAGGGGGACCGAG-CTAATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGACTGAGTG
66 GCACGTAGA-GGGGACCGGGTC-GATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCG
*
16214478 CCCGAACGCACGCTCGTTTCATGGGTTGGTTTAG
129 -CC---CGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ***
16214512 GCATACGGAGTTCATTCCCA-GTCTAAAATGGGATTGGACCGAGGGTTGCGGTAGCAAAATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCTGGATCGAC
* * * * * * *
16214576 AGCACGTAG-GAGGACCGGGTCGATCCCCGGCTTGCACATTCTGTCTCTCTGG-CCGATCAAGTG
65 AGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCT-GAGCG
* * *
16214639 CCCGTACGCTCGTTTCGTGGGTTAGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16214669 GCATGC-GAGTTCATTCCATATCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16214695 CATATGGAGC
Statistics
Matches: 398, Mismatches: 89, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
155 3 0.01
156 14 0.04
157 36 0.09
158 53 0.13
159 154 0.39
160 15 0.04
161 36 0.09
162 1 0.00
163 83 0.21
164 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCTGGATCGACA
GCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16214809 original size:26 final size:26
Alignment explanation
Indices: 16214780--16214830 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214770 GTTGACTTAG
16214780 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
16214806 GCATACGGAGTTCATTCCTCGTCTA
1 GCATACGGAGTTCATCCCTAGTCTA
16214831 GGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16215257 original size:159 final size:159
Alignment explanation
Indices: 16214943--16215299 Score: 425
Period size: 159 Copynumber: 2.2 Consensus size: 159
16214933 GCCCACACAG
* * *
16214943 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCCGGACCGAGGGTTGTGGTA
1 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
**
16215008 GCTGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
66 GCAAGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
* * *
16215073 CTTGCTTAGCGTCCGCACACCCATTTTGT
131 CTCGCTTAACGTCCGCACACCCATTTCGT
* *
16215102 GGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCA
1 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
* * * * * ** *
16215167 GCAAGACCGGTAGCACGCATAGGGGGA-CAGGGTCGATCCTTGGCTTGCGCATTATGCCTCTTTG
66 GCAAGACCAGCAGCACGCAGAGGGGGATC-GGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCG
* * * *
16215231 GC-CGGTTCAATG-CCTGCACGCTCATTTCGT
130 GCTCGCTT-AACGTCC-GCACACCCATTTCGT
* * *
16215261 GGGTTGACTTATGCATACGGAGTTCATTCGCA-GTCTAAG
1 GGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAG
16215300 ATCAAATCGG
Statistics
Matches: 168, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
158 6 0.04
159 160 0.95
160 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
GCAAGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
CTCGCTTAACGTCCGCACACCCATTTCGT
Found at i:16215461 original size:26 final size:26
Alignment explanation
Indices: 16215432--16215485 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
16215422 GTTGGCTTAG
**
16215432 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
16215458 GCATTTGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16215484 GC
1 GC
16215486 CACGGTGCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16216182 original size:26 final size:26
Alignment explanation
Indices: 16216129--16216184 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16216119 TGGGTTGACT
* *
16216129 TAAGCATACGTAGTTCATCGCCAGTC
1 TAAGCATACGGAGTTCATCGCCAATC
16216155 TAAGCATACGGAGTTCATTC-CCAATC
1 TAAGCATACGGAGTTCA-TCGCCAATC
16216181 TAAG
1 TAAG
16216185 TTCAGACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCGCCAATC
Found at i:16216663 original size:26 final size:26
Alignment explanation
Indices: 16216633--16216688 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16216623 TGGGTTGGCT
** *
16216633 TAAGCATACGCAGTTCATTCCATGTC
1 TAAGCATACAAAGTTCATTCCATATC
*
16216659 TAAGCATACAAAGTTCATTCCCTATC
1 TAAGCATACAAAGTTCATTCCATATC
16216685 TAAG
1 TAAG
16216689 GTCGGACCGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCATATC
Found at i:16217039 original size:26 final size:26
Alignment explanation
Indices: 16217003--16217055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16216993 GTTGACTTAG
16217003 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16217029 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16217055 G
1 G
16217056 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16217331 original size:159 final size:157
Alignment explanation
Indices: 16217068--16217531 Score: 411
Period size: 159 Copynumber: 2.9 Consensus size: 157
16217058 TGGACTGGAT
* * * ** ** * *
16217068 CGAGGGTTGCGGCAGTAGGATCGACAGCACGTAG-GGGGGATCGAGCTAATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAAGGGATCGGGCTGATCCCCGGCTTGCGCA
* * * *
16217132 TTCTGCCTC-TCTAGTCGGTTGAGTGCCCGCAGGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
66 TTCTGCCTCTTC-GGTCGG-TCAGTGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGA
*
16217196 GTTCATTCCATGTCTAAGCGCCAATC-GAA
129 GTTCATTCCATGTCTAAGCG-CAACCGGAA
* * * *
16217225 CCGAGGGTTGTGGCAGCGGGACCGACAGTACACAGAAAGGGATCGGGCTGATCCCCAGATTGCGC
1 -CGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAAGGGATCGGGCTGATCCCCGGCTTGCGC
* * * ** * *
16217290 ATTATGCCTCTTCGGTCGGCTCAGCGCCCGCAAGCTTGTTTCGTGGGTTCACTTATGCATATGGA
65 ATTCTGCCTCTTCGGTCGG-TCAGTGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGA
* **
16217355 GTTCATTCC-TAGTCTAAGATGGGACCGGAA
129 GTTCATTCCAT-GTCTAAG-CGCAACCGGAA
* * * ** *** * *
16217385 TGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGGGGACCGGG-TCGATCCCCGGCTTACGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAAGGGATCGGGCT-GATCCCCGGCTTGCGC
* * * *
16217449 ATTCTGCCTCTCCGGTCGGTCGAGTGCCCACACA-CTCGTTTCGTAGGTTGGCTTAGGCAT-GCG
65 ATTCTGCCTCTTCGGTCGGTC-AGTGCCCGCA-AGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
16217512 AGTTCATTCCATGTCTAAGC
128 AGTTCATTCCATGTCTAAGC
16217532 ATACGGAGCT
Statistics
Matches: 242, Mismatches: 55, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 49 0.20
159 186 0.77
160 7 0.03
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
CGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAAGGGATCGGGCTGATCCCCGGCTTGCGCA
TTCTGCCTCTTCGGTCGGTCAGTGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
TCATTCCATGTCTAAGCGCAACCGGAA
Found at i:16218268 original size:26 final size:26
Alignment explanation
Indices: 16218232--16218310 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16218222 GTTGACTTAG
16218232 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16218258 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16218284 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16218310 G
1 G
16218311 ATTGAATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16218471 original size:26 final size:26
Alignment explanation
Indices: 16218442--16218494 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16218432 GTTGGCTTAG
*
16218442 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCACA-GTCTAA
*
16218468 GCATATGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16218494 G
1 G
16218495 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:16219158 original size:928 final size:927
Alignment explanation
Indices: 16217353--16220122 Score: 4433
Period size: 928 Copynumber: 3.0 Consensus size: 927
16217343 TATGCATATG
* * * * * * ** **
16217353 GAGTTCATTCCTAGTCTAAGATGGGACCGGAATGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
* * * * * * * **
16217418 GGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGG-TCGAGTGCCCACAC
66 -GGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCT-GAG-CCCCGTAC
* * * * *
16217482 ACTCGTTTCGTAGGTTGGCTTAGGCATGC-GAGTTCATTCCATGTCTAAGCATACGGAGCTCATT
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCA-T
* * *
16217546 TC-CAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTT
192 TCACAGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACA-TT
* * * *
16217610 TTTTTGCA-C-GGGGCACCATCTCCGGAGCATCGTCGGAGCATCGTTGGAAAGCCTAACCGGCGG
256 TTTTT-CACCTGGGGCACCATCGCTGGAGCATCG-CCGA--A------G--AGCCTAACCGACGG
* * * *
16217673 CATTGGGGGTTCCGACGATTGGGGGGCCGGGGG-TGTGTGCACATGATGTACGATGGGTGCTGGT
309 CATTGGGGGTTCGGAAGATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
16217737 ACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAG
374 ACTTAGCCATTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
16217802 CATTTAAGATTTTATAGGTGTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
439 CATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * * *
16217867 CAAACGGTCACAAAATCTTCTCCACTTTA-G-GTTTTTTGCTGAATTTTTTTGTGCATGCCAAAA
504 CAAATGATCACAAAATCTTCTCCAC--TACGAGTTTTTAGCTGAATGTTTTTGTGCAAGTCAACA
* *
16217930 AAAATACAAGGATCACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAAT
567 AAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAAT
*
16217995 CCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTT
632 CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTT
16218060 TAGATGAAGGCTTAGGGAACCATTGCATGAATTTACAAGCCATAAAAAATTGGCATGGCAGAAAT
697 TAGATGAAGGCTTAGGGAACCATTGCATGAATTTACAAGCCATAAAAAATTGGCATGGCAGAAAT
16218125 ATGAAGATGTGCTCGAACCCACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTG
762 ATGAAGATGTGCTCGAACCCACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTG
16218190 GTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
827 GTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
16218255 TAAGCATACGGAGTTCATCCCCAATCTAAGCATACA
892 TAAGCATACGGAGTTCATCCCCAATCTAAGCATACA
16218291 GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
1 GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
*
16218356 GGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCCCCTGTACGT
66 GGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCCCC-GTACGC
*
16218421 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCA
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCA
16218486 CAGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTT
195 CAGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTT
16218551 TCACCTGGGGCACCATCGCTGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTCGGAA
260 TCACCTGGGGCACCATCGCTGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTCGGAA
16218616 GATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCATTATATT
325 GATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCATTATATT
16218681 GGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATA
390 GGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATA
*
16218746 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAGAAT
455 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAAT
*
16218811 CTTCTCCACTACGAGTTTTTAGATGAATGTTTTTGTGCAAGTCAACAAAAATACAAGGATCACCT
520 CTTCTCCACTACGAGTTTTTAGCTGAATGTTTTTGTGCAAGTCAACAAAAATACAAGGATCACCT
*
16218876 CTACCAAATTTGGGGATAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
585 CTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
16218941 TTGAAAATCGTGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTTAGATGAAGGCTTAGGGA
650 TTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTTAGATGAAGGCTTAGGGA
16219006 ACCATTGCATGAATTTACAAGCCATAAAAAATTGGCATGGCAGAAATATGAAGATGTGCTCGAAC
715 ACCATTGCATGAATTTACAAGCCATAAAAAATTGGCATGGCAGAAATATGAAGATGTGCTCGAAC
*
16219071 CCACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCAGCTGAGCGCCCGCA
780 CCACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCA
16219136 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
845 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
16219201 CCCCAATCTAAGCATACA
910 CCCCAATCTAAGCATACA
16219219 GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
1 GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
*
16219284 -GAGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCCCCGTACGC
66 GGA-GGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCCCCGTACGC
*
16219348 TCGTTTCATGGGTTGGCTTAGGCATACAGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
130 TCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
16219413 ACAGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
194 ACAGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
16219478 TTCACCTGGGGCACCATCGCTGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTCGGA
259 TTCACCTGGGGCACCATCGCTGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTCGGA
16219543 AGATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCATTATAT
324 AGATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCATTATAT
*
16219608 TGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAAATTTTAT
389 TGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTAT
16219673 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAA
454 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAA
16219738 TCTTCTCCACTACGAGTTTTTAGCTGAATGTTTTTGTGCAAGTCAACAAAAATACAAGGATCACC
519 TCTTCTCCACTACGAGTTTTTAGCTGAATGTTTTTGTGCAAGTCAACAAAAATACAAGGATCACC
16219803 TCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
584 TCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
** * * * * * *
16219868 TTCAAAAATCATGAAAAATAGAAACCGGGTCGTCTTGCCACGACAGTTCACATGAAGGCTTAGGG
649 TTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTTAGATGAAGGCTTAGGG
* * * * *
16219933 GACCATTGAATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATATGAAGATTTGCT
714 AACCATTGCATGAATTTACAAGCCATAAAAA----ATTGGCATGGCAGAAATATGAAGATGTGCT
* * * ** ** * *
16219998 TGAACCCACCTACCACCCGTTTGATCCCCCACTTCCGCATCCTGCCACTCTGGTCGGCTGAGCGC
775 CGAACCCACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGC
* ** * *
16220063 CCGTACGCTCATTTCGTGGGTTGACTTAGTTATACGGAGGTCATCCCTAGTCTAAGCATA
840 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
16220123 TGAAGTTTAT
Statistics
Matches: 1719, Mismatches: 98, Indels: 36
0.93 0.05 0.02
Matches are distributed among these distances:
926 2 0.00
927 78 0.05
928 1244 0.72
929 1 0.00
932 138 0.08
935 1 0.00
936 5 0.00
937 87 0.05
938 163 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (927 bp):
GAGTTCATTCCTAGTCTAAGATTGAATCGGAGTGAGGATTGCGACAGCAGGATCGGTAGCACGTA
GGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCCCCGTACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCAC
AGTCTAAGATTTTGAGCCACGGTGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTT
CACCTGGGGCACCATCGCTGGAGCATCGCCGAAGAGCCTAACCGACGGCATTGGGGGTTCGGAAG
ATTGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCATTATATTG
GCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATC
TTCTCCACTACGAGTTTTTAGCTGAATGTTTTTGTGCAAGTCAACAAAAATACAAGGATCACCTC
TACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
TGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTTAGATGAAGGCTTAGGGAA
CCATTGCATGAATTTACAAGCCATAAAAAATTGGCATGGCAGAAATATGAAGATGTGCTCGAACC
CACCTACTACCTGTTCAATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATC
CCCAATCTAAGCATACA
Found at i:16219196 original size:26 final size:26
Alignment explanation
Indices: 16219160--16219238 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16219150 GTTGACTTAG
16219160 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16219186 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16219212 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16219238 G
1 G
16219239 ATTGAATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16219409 original size:26 final size:27
Alignment explanation
Indices: 16219369--16219422 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
16219359 GTTGGCTTAG
*
16219369 GCATACAGGAGTTCATTC-CATGTCTAA
1 GCATACAGAAGTTCATTCACA-GTCTAA
16219396 GCATAC-GAAGTTCATTCACAGTCTAA
1 GCATACAGAAGTTCATTCACAGTCTAA
16219422 G
1 G
16219423 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGAAGTTCATTCACAGTCTAA
Found at i:16220617 original size:26 final size:26
Alignment explanation
Indices: 16220581--16220633 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220571 GTTGGCTTAG
16220581 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16220607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16220633 G
1 G
16220634 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.