Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 107 of 138
Found at i:16221398 original size:11 final size:11
Alignment explanation
Indices: 16221384--16221415 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
16221374 CTCTGGCTCA
*
16221384 CCTGCTGTGCG
1 CCTGATGTGCG
16221395 CCTGATGTGCG
1 CCTGATGTGCG
16221406 CCTGATGTGC
1 CCTGATGTGC
16221416 TGCCCGCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.31, G:0.34, T:0.28
Consensus pattern (11 bp):
CCTGATGTGCG
Found at i:16224785 original size:124 final size:124
Alignment explanation
Indices: 16224565--16224812 Score: 442
Period size: 124 Copynumber: 2.0 Consensus size: 124
16224555 GGTCTCCTTG
* *
16224565 CCTTTCCAGTCTCCAAGCTATAACTCCACTCCCTGCGCTACTTCAACGACTGGAACTTCCTTGGA
1 CCTTTCAAGTCTCCAAGCTATAACTCCACTCCCCGCGCTACTTCAACGACTGGAACTTCCTTGGA
* *
16224630 GTTCATCATTTTGATGGTACCAGTCCCTTTCTGCACCTTTAGTCTGAGCTTCTGGCCTC
66 GTTCATCATTTTGATGGTACCAATCCCTTTCTGCACCTTTAGTCCGAGCTTCTGGCCTC
*
16224689 CCTTTCAAGTCTCCAAGCTATAACTCCACTCCCCGCGCTACTTCAACGACTGGAACTTCCTTTGA
1 CCTTTCAAGTCTCCAAGCTATAACTCCACTCCCCGCGCTACTTCAACGACTGGAACTTCCTTGGA
*
16224754 GTTCATCATTTTGATGGTACCAATCCCTTTCTGTACCTTTAGTCCGAGCTTCTGGCCTC
66 GTTCATCATTTTGATGGTACCAATCCCTTTCTGCACCTTTAGTCCGAGCTTCTGGCCTC
16224813 TATCACCTAA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 118 1.00
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (124 bp):
CCTTTCAAGTCTCCAAGCTATAACTCCACTCCCCGCGCTACTTCAACGACTGGAACTTCCTTGGA
GTTCATCATTTTGATGGTACCAATCCCTTTCTGCACCTTTAGTCCGAGCTTCTGGCCTC
Found at i:16227370 original size:26 final size:26
Alignment explanation
Indices: 16227340--16227392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227330 GTTGACTTAG
* *
16227340 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16227366 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16227392 G
1 G
16227393 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16227728 original size:159 final size:158
Alignment explanation
Indices: 16227366--16228039 Score: 588
Period size: 159 Copynumber: 4.2 Consensus size: 158
16227356 CCCAGTCTAA
* ** * *
16227366 GCATACAGAGTTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
* * * * *
16227431 GCACGTAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * *
16227496 TGTACGC-CTGTTTCGTGGCTT-AGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGA-CTTAG
* ** * * * ***
16227524 GCA-A-AGGAAGTTCATT-CCATGTCTAAG-CCCTAGCCAAACCAAGGGTTGTGGCAGTGGGATC
1 GCATACA-G-AGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAACAGGATC
* * * * * *
16227585 GGCAGCCCGCGAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCA
62 GACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
** * *
16227650 GCACCCGCACACTCGTTTCGTGGGTTGACCTAG
126 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16227683 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
* * * ** *
16227748 GCATGCAGGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGTGTGC
66 GCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
* * *
16227813 CCGCACGCTCTTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16227842 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCCGCAGCAGGACCAGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CG--GCA--A-C---A
* * * ** * * *
16227907 GCATGATCGATAGCACACAAGGGGGGACCGGGTCGATCTTCGACTTGTGCATTCTGCCTCTCCGG
57 G---GATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
** * * *
16227972 CCGGCTGAGCACTCGCGCGCTCGTTTCGTGGGTTGGCTTAG
118 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16228013 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
16228040 CCCCAGTCGG
Statistics
Matches: 410, Mismatches: 80, Indels: 39
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.01
158 45 0.11
159 230 0.56
160 10 0.02
161 1 0.00
162 3 0.01
164 1 0.00
165 1 0.00
168 2 0.00
170 2 0.00
171 107 0.26
172 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16228071 original size:171 final size:170
Alignment explanation
Indices: 16227731--16228188 Score: 472
Period size: 171 Copynumber: 2.7 Consensus size: 170
16227721 CCGAGGGTTG
* * * * *
16227731 CAGCAACAGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCA-ACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC
* * * * *
16227796 TCCGGTCGGCTGTGTGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCT
65 TCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCT
* * *
16227861 AGTCTAAGATCGGACCAGACTGAGGGTTGCCGCAGCAGGAC
130 AGTCTAAGACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
* * * ** *
16227902 CAGTAGCATGATCGATAGCACACAAGGGGGGACCGGGTCGATCTTCGACTTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCA-ACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC
* * * *
16227967 TCCGGCCGGCTGAGCACTCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-
65 TCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCT
* * * ** *
16228031 ATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGTAGCAGGAC
130 A-GTCTAAG-ACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
* * *** * * *
16228073 CGGCAGCGGGATCGACAGCATGTAGAGGGGGACCGGG-CTGATCCCCAAGTTGCGCATTATGCCT
1 CAGCAGCAGGATCGACAGCAACAAG-GGGGGACCGGGTC-GATCCCCGACTTGCGCATTCTGCCT
* * * *
16228137 CTCCGGCCGACTGAGCGCCCGCACGATCATTTTGTGGGTTGACTTAGGCATA
64 CTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
16228189 TGAAGTTCGT
Statistics
Matches: 232, Mismatches: 51, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
170 4 0.02
171 226 0.97
172 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (170 bp):
CAGCAGCAGGATCGACAGCAACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCT
CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTA
GTCTAAGACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
Found at i:16228220 original size:26 final size:26
Alignment explanation
Indices: 16228184--16228236 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16228174 GTTGACTTAG
* *
16228184 GCATATGAAGTTCGTCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16228210 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16228236 G
1 G
16228237 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16228902 original size:26 final size:26
Alignment explanation
Indices: 16228852--16228904 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16228842 GTTGGCTTAG
* *
16228852 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16228878 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16228904 G
1 G
16228905 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16229610 original size:26 final size:26
Alignment explanation
Indices: 16229573--16229625 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16229563 GTTGACTTAG
*
16229573 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
16229599 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
16229625 G
1 G
16229626 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16229961 original size:159 final size:158
Alignment explanation
Indices: 16229599--16230272 Score: 588
Period size: 159 Copynumber: 4.2 Consensus size: 158
16229589 CCCAGTCTAA
* ** * *
16229599 GCATACAGAGTTCATTCCCAATCTAAGATTAGATCAGACCGAGGGTTACGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
* * * * *
16229664 GCACGTAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * *
16229729 TGTACGC-CTGTTTCGTGGCTT-AGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGA-CTTAG
* ** * * * ***
16229757 GCA-A-AGGAAGTTCATT-CCATGTCTAAG-CCCTAGCCAAACCAAGGGTTGTGGCAGTGGGATC
1 GCATACA-G-AGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAACAGGATC
* * * * * *
16229818 GGCAGCCCGCGAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCA
62 GACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
** * *
16229883 GCACCCGCACACTCGTTTCGTGGGTTGACCTAG
126 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16229916 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
* * * ** *
16229981 GCATGCAGGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGTGTGC
66 GCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
* * *
16230046 CCGCACGCTCTTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16230075 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCCGCAGCAGGACCAGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CG--GCA--A-C---A
* * * ** * * *
16230140 GCATGATCGATAGCACACAAGGGGGGACCGGGTCGATCTTCGACTTGTGCATTCTGCCTCTCCGG
57 G---GATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
** * * *
16230205 CCGGCTGAGCACTCGCGCGCTCGTTTCGTGGGTTGGCTTAG
118 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16230246 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
16230273 CCCCAGTCGG
Statistics
Matches: 410, Mismatches: 80, Indels: 39
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 6 0.01
158 45 0.11
159 230 0.56
160 10 0.02
161 1 0.00
162 3 0.01
164 1 0.00
165 1 0.00
168 2 0.00
170 2 0.00
171 107 0.26
172 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16230304 original size:171 final size:170
Alignment explanation
Indices: 16229964--16230421 Score: 472
Period size: 171 Copynumber: 2.7 Consensus size: 170
16229954 CCGAGGGTTG
* * * * *
16229964 CAGCAACAGGATCGACAGCATGCAGGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCA-ACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC
* * * * *
16230029 TCCGGTCGGCTGTGTGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCT
65 TCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCT
* * *
16230094 AGTCTAAGATCGGACCAGACTGAGGGTTGCCGCAGCAGGAC
130 AGTCTAAGACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
* * * ** *
16230135 CAGTAGCATGATCGATAGCACACAAGGGGGGACCGGGTCGATCTTCGACTTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCA-ACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC
* * * *
16230200 TCCGGCCGGCTGAGCACTCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-
65 TCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCT
* * * ** *
16230264 ATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGTAGCAGGAC
130 A-GTCTAAG-ACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
* * *** * * *
16230306 CGGCAGCGGGATCGACAGCATGTAGAGGGGGACCGGG-CTGATCCCCAAGTTGCGCATTATGCCT
1 CAGCAGCAGGATCGACAGCAACAAG-GGGGGACCGGGTC-GATCCCCGACTTGCGCATTCTGCCT
* * * *
16230370 CTCCGGCCGACTGAGCGCCCGCACGATCATTTTGTGGGTTGACTTAGGCATA
64 CTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
16230422 TGAAGTTCGT
Statistics
Matches: 232, Mismatches: 51, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
170 4 0.02
171 226 0.97
172 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (170 bp):
CAGCAGCAGGATCGACAGCAACAAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCT
CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTA
GTCTAAGACCAGACCAGACAGAGGGTTGCCGCAGCAGGAC
Found at i:16230453 original size:26 final size:26
Alignment explanation
Indices: 16230417--16230469 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16230407 GTTGACTTAG
* *
16230417 GCATATGAAGTTCGTCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16230443 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16230469 G
1 G
16230470 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16231137 original size:26 final size:26
Alignment explanation
Indices: 16231087--16231139 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16231077 GTTGGCTTAG
* *
16231087 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16231113 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16231139 G
1 G
16231140 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16231837 original size:26 final size:26
Alignment explanation
Indices: 16231808--16231860 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16231798 GTTGAGTTAG
16231808 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* **
16231834 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16231860 G
1 G
16231861 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16232312 original size:158 final size:158
Alignment explanation
Indices: 16231834--16232651 Score: 630
Period size: 158 Copynumber: 5.2 Consensus size: 158
16231824 CCCAGTCTAA
16231834 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
16231898 AGCACGCAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
65 AGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCAC
* *
16231963 CCGTACGTCCATTTTGTGGGTTGGCTTAG
130 CCGTACGCCCATTTCGTGGGTTGGCTTAG
* * ** * * * * *
16231992 GCAGAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * *
16232056 AGCATGCAGAGAGGGACCAGGCCGATCCCCGACTTGTGCATTATGCCT-TTCCGGCTAGCTCAGC
65 AGCATGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGGCTGGCTGAGC
* *
16232120 ACCCGTACGCTCATTTCGTGGGTTGACTTAG
128 ACCCGTACGCCCATTTCGTGGGTTGGCTTAG
* * * *
16232151 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGAGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * *
16232215 AGCATGCAGGGGGGACCAGATCGATCCCCGGCTTGCGTATTCTGCCTCTTTGGTTGGCTGAGCAC
65 AGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCAC
** * * *
16232280 ATGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGTACGCCCATTTCGTGGGTTGGCTTAG
* ** * * * ** *
16232309 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACAGATGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * * *
16232373 AGCA--CACGAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTC-TCCGATCGGCTCAA
65 AGCATGCA-G-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCT-GGCTGAG
** * * * * *
16232435 TGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 CACCCGTACGCCCATTTCGTGGGTTGGCTTAG
* * * * * * * *
16232467 GCATACGGAATTCATTCC-TAGTCTAAGATCAGACCAGTCCGACGATTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
*** ** * * * * * ** **
16232531 AGCACAAAGGGGGGACTGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCTACCAGCTGAG-AG
65 AGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCA-
* *** *
16232595 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
129 CCCGTACGCCCATTTCGTGGGTTGGCTTAG
* *
16232625 GCATACGAAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16232652 CATACGAAGT
Statistics
Matches: 516, Mismatches: 125, Indels: 38
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.00
157 16 0.03
158 363 0.70
159 131 0.25
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
GCATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCACC
CGTACGCCCATTTCGTGGGTTGGCTTAG
Found at i:16232560 original size:316 final size:315
Alignment explanation
Indices: 16231834--16232652 Score: 916
Period size: 316 Copynumber: 2.6 Consensus size: 315
16231824 CCCAGTCTAA
* * *
16231834 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAATTCA-TTCCAGTCTAAGATCAGACCGGACCGAAGATTGTGGCAGTAGGATCGACA
* * *
16231899 GCACGCAA-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
65 GCAC-AAAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCAC
* * * ** * *
16231963 CCGTACGTCCATTTTGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
129 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
16232028 GATCGAGGGTTGTGGCAGCAGGACCGACAGCATGCAGAGAGGGACCAGGCCGATCCCCGACTTGT
194 GATCGAGGGTTGTGGCAGCAGGACCGACAGCA-GCAGAGAGGGACCAGGCCGATCCCCGACTTGT
* * *
16232093 GCATTATGCCTTTCCGGCTAGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAG
258 GCATTATGCCTCTCCGGCTAGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
*
16232151 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AAGAGTTGCGGCAGTAGGATCGA
1 GCATACGGAA-TTCATT-CCAGTCTAAGATCAGACCGGACCGAAGA-TTGTGGCAGTAGGATCGA
*** * * * * **
16232214 CAGCATGCAGGGGGGACCAGATCGATCCCCGGCTTGCGTATTCTGCCTCTTTGGTTGGCTGAGCA
63 CAGCACAAAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCA
**
16232279 CATGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
128 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * * * *
16232344 GGA-CAGATGGTTGTGGTAGCGGGATCGGCAGCA-CACGAGGGGGACCGGGCCGATCCTCGGCTT
193 AGATC-GAGGGTTGTGGCAGCAGGACCGACAGCAGCA-GAGAGGGACCAGGCCGATCCCCGACTT
* * ** * *
16232407 GTGCATTATGCCTCTCC-GATCGGCTCAATGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
256 GTGCATTATGCCTCTCCGGCT-AGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
16232467 GCATACGGAATTCATTCCTAGTCTAAGATCAGACCAGTCCGACGATTATGGTAGCAGGATCGACA
1 GCATACGGAATTCATTCC-AGTCTAAGATCAGACCGGACCGAAGATTGTGGCAGTAGGATCGACA
* * * * * * *
16232532 GCACAAAGGGGGGACTGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCT-ACCAGCTGAG-AG
65 GCACAAAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-CTGGCCGGCTGAGCA-
** * * *
16232595 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCGTGTCTAAGC
128 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16232653 ATACGAAGTT
Statistics
Matches: 417, Mismatches: 73, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
315 7 0.02
316 220 0.53
317 190 0.46
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAATTCATTCCAGTCTAAGATCAGACCGGACCGAAGATTGTGGCAGTAGGATCGACAG
CACAAAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
TCGAGGGTTGTGGCAGCAGGACCGACAGCAGCAGAGAGGGACCAGGCCGATCCCCGACTTGTGCA
TTATGCCTCTCCGGCTAGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16233038 original size:26 final size:26
Alignment explanation
Indices: 16233002--16233057 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16232992 TGGGTTGACT
16233002 TAAGCATACAGAGTTCA-TCTCCAGTC
1 TAAGCATACAGAGTTCATTC-CCAGTC
16233028 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
16233054 TAAG
1 TAAG
16233058 ATCGGATCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:16233417 original size:26 final size:26
Alignment explanation
Indices: 16233386--16233437 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16233376 GTTGACTGAG
16233386 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16233412 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16233438 AATTGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16233766 original size:26 final size:26
Alignment explanation
Indices: 16233729--16233781 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16233719 GTTCACTTAG
16233729 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16233755 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
16233781 G
1 G
16233782 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16233913 original size:184 final size:185
Alignment explanation
Indices: 16233634--16234051 Score: 531
Period size: 184 Copynumber: 2.3 Consensus size: 185
16233624 TGGGATCGGT
*
16233634 AGCACGTAGAGGAGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA
1 AGCACGTAGAGGAGGACCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA
* * * *
16233699 CCCCCACGCTTGTTTCGTGCGTTCACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGA
66 CCCACACGCTCGTTTCATGCGTTCACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGA
16233764 GTTCATTCCCAGTCTAAGATCAAACTGAATCAAGGGTTACGACAGTTGGATCGAC
131 GTTCATTCCCAGTCTAAGATCAAACTGAATCAAGGGTTACGACAGTTGGATCGAC
* * *
16233819 AGCACGTA-AGGGGGATCGGGTCGATCC-CTAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGC
1 AGCACGTAGAGGAGGACCGAGTCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGC
* * * * * *
16233882 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGG
65 ACCCACACGCTCGTTTCATGCGTTCACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAG
* * * * * **
16233947 AGTTCATTCCCAGTCTAAGATCAGAC-CAGATCGAGCGTTGCGACAGCAGGATCGAC
130 AGTTCATTCCCAGTCTAAGATCAAACTGA-ATCAAGGGTTACGACAGTTGGATCGAC
** * * * *
16234003 AGCACACAGAGG-GGACC-AGGCCGATCCCCAGCTTACGCATTCTACCTCT
1 AGCACGTAGAGGAGGACCGA-GTCGATCCTCAGCTTGCGCATTCTGCCTCT
16234052 TCGGTTGGCT
Statistics
Matches: 200, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
183 2 0.01
184 186 0.93
185 12 0.06
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (185 bp):
AGCACGTAGAGGAGGACCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA
CCCACACGCTCGTTTCATGCGTTCACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAAACTGAATCAAGGGTTACGACAGTTGGATCGAC
Found at i:16233943 original size:26 final size:26
Alignment explanation
Indices: 16233913--16233965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16233903 GTTGACTTAG
*
16233913 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16233939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16233965 G
1 G
16233966 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16234124 original size:184 final size:183
Alignment explanation
Indices: 16233656--16234124 Score: 496
Period size: 184 Copynumber: 2.6 Consensus size: 183
16233646 AGGACCGAGT
* * * * * * * * * *
16233656 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCCCACGCTTGTTTCGTGCGT
1 CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
* *
16233721 TCACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * ** * * *
16233786 AACTGAATCAAGGGTTACGACAGTTGGATCGACAGCACGTAAGGGGGATCGGGT
131 AACAGAATCAAGCGTTACGACAGCAGGATCGACAGCACG-AAGGGGGACCAGGC
* * * *
16233840 CGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCACACGCTCGTTTCATGGGT
1 CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
* * *
16233905 TGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * *
16233970 GACCAG-ATCGAGCGTTGCGACAGCAGGATCGACAGCAC-ACAGAGGGGACCAGGC
131 -AACAGAATCAAGCGTTACGACAGCAGGATCGACAGCACGA-AG-GGGGACCAGGC
* *** * * * **
16234024 CGATCCCCAGCTTACGCATTCTACCTCTTCGGTTGGCTGAGTGCCCATATGCTCGTTTTGTGGGT
1 CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
* *
16234089 T-AGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
66 TGA-CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
16234125 CCTAGCCGGA
Statistics
Matches: 241, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
182 1 0.00
183 6 0.02
184 231 0.96
185 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (183 bp):
CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
AACAGAATCAAGCGTTACGACAGCAGGATCGACAGCACGAAGGGGGACCAGGC
Found at i:16234428 original size:26 final size:26
Alignment explanation
Indices: 16234394--16234446 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16234384 GTTGGCTTAG
*
16234394 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16234420 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16234446 G
1 G
16234447 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16234634 original size:26 final size:26
Alignment explanation
Indices: 16234605--16234656 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16234595 TTGACTTAGC
16234605 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
16234631 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
16234657 ATTGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:16236164 original size:158 final size:158
Alignment explanation
Indices: 16235711--16236196 Score: 532
Period size: 158 Copynumber: 3.1 Consensus size: 158
16235701 TAAGCATATA
* * ** *
16235711 GAGTTCATTCCCAATCTAAGATCGGACCGGATAGAGGGTTGCGACAGTAGGATCGATAGCATGCA
1 GAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGATAGCATGCA
* * * * * *
16235776 AGAGGGACCAGGCCTATCCCCGGCTTGCACATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACG
66 GGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACG
* * *
16235840 CCCGTATCGTGGGTT-AGCTTAGGCATAGG
130 CTCGTTTCGTGGGTTGA-CTTAGGCATACG
** * * * * * * *
16235869 GAGTTCATT-CCAAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACG
1 GAGTTCATTCCCAA-TCTAAG-ATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGATAGCATG
* * * * * * * *
16235932 CAGAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTTCGAAC-GGTTCAGTGCCTGC
64 CAG-GGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG-ACTGGCTGAGCGCCCGC
* *
16235996 ACGCTCGTTTCATGGGTTGACTTAGGCGTACG
127 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
16236028 GAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGATAGCATGCA
1 GAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGATAGCATGCA
* *
16236093 GGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGTACGC
66 GGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGC
* * * *
16236158 TGGTTTCGTGGGTTGGCTTAGGCATGCA
131 TCGTTTCGTGGGTTGACTTAGGCATACG
16236186 GAGTTCATTCC
1 GAGTTCATTCC
16236197 ATGTCTAAGC
Statistics
Matches: 261, Mismatches: 58, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 130 0.50
159 119 0.46
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGCGGTAGCAGGATCGATAGCATGCA
GGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACG
Found at i:16236405 original size:26 final size:26
Alignment explanation
Indices: 16236375--16236427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16236365 GTTGACTTAG
16236375 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16236401 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16236427 G
1 G
16236428 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16236407 original size:196 final size:196
Alignment explanation
Indices: 16236073--16236429 Score: 506
Period size: 196 Copynumber: 1.8 Consensus size: 196
16236063 GGGTTGCGGT
* * * * *
16236073 AGCAGGATCGATAGCATGCAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
* * * * * * *
16236138 CTAGCTGAGCGCCCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATGCAGAGTTCATTCCATGTCT
66 CGAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATATCT
16236203 AAGCATATGGAGTTCATTCCCCA-TCTAAGATTAGATCGGACCAAGGCTTACGGTAGCAAGACTA
131 AAGCATATGGAGTTCATT-CCCAGTCTAAGATTAGATCGGACCAAGGCTTACGGTAGCAAGACTA
16236267 GC
195 GC
* * *
16236269 AGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGTATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
*
16236334 TCGA-CTGAGCGCCCGCT-CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-A
66 -CGAGCTGAGCGCCCG-TACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATA
16236396 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
128 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
16236430 CGAACCAGGC
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
195 4 0.03
196 131 0.93
197 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
CGAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATATCT
AAGCATATGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGCTTACGGTAGCAAGACTAG
C
Found at i:16236586 original size:184 final size:182
Alignment explanation
Indices: 16236027--16236586 Score: 527
Period size: 184 Copynumber: 3.0 Consensus size: 182
16236017 TTAGGCGTAC
* *
16236027 GGAGTTCATTCCCAATCTAAGATC-AGACC-GGACAGAGGGTTGCGGTAGCAGGATCGATAGCAT
1 GGAGTTCATTCCC-ATCTAAGATCGA-ACCAGG-CAGAGGGTTGTGGCAGCAGGATCGATAGCAT
* * * * *
16236090 GCAGGGGGGATCAGGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGT
63 GCAGGGGGGATCGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTCCGTC-AACTGAGCGCCCGC
* *
16236154 ACGCTGGTTTCGTGGGTTGGCTTAGGCAT-GCAGAGTTCATTCCATGTCTAAGCATAT
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCATAT
* ** ** *
16236211 GGAGTTCATTCCCCATCTAAGATTAGATCGGACCAAGGCTTACGGTAGCAAGACTAGCAGCAGGA
1 GGAGTTCATT-CCCATCT---A--AGATCGAACC-AGGCAGA-GG--G-TTG--TGGCAGCAGGA
* * * * * * *
16236276 TCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTACGTATTCTGCCTCTCCGATCGACTG
53 TCGATAGCATGCAGGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCG-TCAACTG
* * * * * *
16236341 AGCGCCCGCTCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCAT
117 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCAT
16236405 AT
181 AT
* * *
16236407 GGAGTTCATTCCCAGTCTAAGATCGAACCAGGCCGAGGGTTGTGGCAGTAGGATCGGTAGCATGC
1 GGAGTTCATTCCCA-TCTAAGATCGAACCAGGCAGAGGGTTGTGGCAGCAGGATCGATAGCATGC
* * * * * *
16236472 AGGGGGGATCGGGCTGATCCCTGGCTTGTGCATTCTACCTCTCCAGTCAACTGAGTGCTCGGACA
65 AGGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCC-GTCAACTGAGCGCCCGCACG
* *
16236537 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16236587 CCCAGCCGGA
Statistics
Matches: 297, Mismatches: 57, Indels: 44
0.75 0.14 0.11
Matches are distributed among these distances:
183 3 0.01
184 122 0.41
185 4 0.01
186 1 0.00
187 2 0.01
189 10 0.03
190 7 0.02
191 13 0.04
193 2 0.01
194 1 0.00
195 4 0.01
196 122 0.41
197 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
GGAGTTCATTCCCATCTAAGATCGAACCAGGCAGAGGGTTGTGGCAGCAGGATCGATAGCATGCA
GGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGTCAACTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATAT
Found at i:16236754 original size:26 final size:26
Alignment explanation
Indices: 16236718--16236770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16236708 GTTGGCATAG
16236718 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16236744 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16236770 G
1 G
16236771 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16238024 original size:13 final size:13
Alignment explanation
Indices: 16238006--16238040 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16237996 CATTATGCCT
16238006 CTCCGATCGGCCC
1 CTCCGATCGGCCC
*
16238019 CTCCGATCGGCCT
1 CTCCGATCGGCCC
*
16238032 CTTCGATCG
1 CTCCGATCG
16238041 ACTGAGCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
CTCCGATCGGCCC
Found at i:16238115 original size:26 final size:26
Alignment explanation
Indices: 16238079--16238131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16238069 GTTAACTTAG
16238079 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
16238105 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16238131 G
1 G
16238132 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16238617 original size:26 final size:26
Alignment explanation
Indices: 16238580--16238632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16238570 GTTGGCTTAG
16238580 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16238606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16238632 G
1 G
16238633 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16239009 original size:501 final size:501
Alignment explanation
Indices: 16238028--16239136 Score: 1325
Period size: 501 Copynumber: 2.2 Consensus size: 501
16238018 CCTCCGATCG
* **
16238028 GCCTCTTCGATCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCA
1 GCCTCTCCGATCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
* * * ** *
16238093 TCCCCA-GTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTACGGC
66 T-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGAC
** * * * * * * ** * *
16238157 AGCAGGATCGGTAGCATATAGGGGGGATCGGGCTGATCCTTAGCTTGTGCATTCTGCTTCTCTAG
130 AGCAGGATCGACAGCACATAGGGGGGACCGGGCTAAACCTCAGCTAGCACATTCTGCTCCTCGAG
** * * * *
16238222 GTGGCTGAGCACCCACATGCCCGTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCT
195 CCGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * *
16238287 AAGCCCCAGCCGGACCAAGGGTTGTGGCAGTGGGAATGGCAGCACGCAGAGAGGGATCGAGTCGA
260 AAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGAGAATCGCAGCACGCAGAGAGGGATCGAGCCGA
* * ** *
16238352 TCCCCGGCTTAGGCGTTATGCCTCCCCGGCCAGCTCAACGCCTGAACACTCGTTTCATGGGTTGA
325 TCCCCAGCTTAGGCATTATGCCTCCCCGGCCAGCTCAACGCCCAAACACTCGTTTCATGGGTTCA
* * ** * *
16238417 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACTACACCGAGGGTTGCGATAGCAGGAT
390 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCACACCGAGGGTTGCGAAAGCAGGAT
* *
16238482 CGACAGCTCGCAGAGGGGACCGGGTCGATCCCC-GATTTACGCATTTT
455 CGACAGCTCGCAGAGGGGACCGGGTCGATCCCCAG-CTTACGCATTCT
* * * *
16238529 GCCTCTCCGATTGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTC
1 GCCTCTCCGATCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTC
*
16238593 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGAC
65 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGAC
* * *
16238658 AGTAGGATTGACAGCACGTAGGGGGGACCGGGCTAAACCTCAGCTAGCACATTCTGCCTCCTCGA
130 AGCAGGATCGACAGCACATAGGGGGGACCGGGCTAAACCTCAGCTAGCACATTCTG-CTCCTCGA
** * *
16238723 -CCGACTGAGTGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
194 GCCGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * *
16238787 TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGAG-ATCGCAGCACGTAGAGGGGGA-CTGGGCC
259 TAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGAGAATCGCAGCACGCAGAGAGGGATC-GAGCC
* * *
16238850 GATCCCTAGCTT-GCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCAAACACTCGTTTCATGGGT
323 GATCCCCAGCTTAG-GCATTATGCCTCCCCGGCCAGCTCAACGCCCAAACACTCGTTTCATGGGT
* ** *
16238914 TCACTTAGGCATACGAAGTTCATTCCCAATCTTAGATCAGACCGGACCGAGGGTTGCGAAAGTAG
387 TCACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCACACCGAGGGTTGCGAAAGCAG
* * * * * *
16238979 GATCTACAGCAT-GCAGGGTGGGATCGGGTCGGTCCTCAGCTTGCGCATTCT
452 GATCGACAGC-TCGCAGAG-GGGACCGGGTCGATCCCCAGCTTACGCATTCT
* * * ** * *
16239030 GCCTCTCCGATCAACTGAGCACCCGTACGCTCATTTTATGGGTTGGCTCAAGCATACAGAGTTCA
1 GCCTCTCCGATCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
** **
16239095 TTCCATGTCTAAGCATATAGAGTTCATTCATAGTCTAAGATC
66 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
16239137 GGATCGGACC
Statistics
Matches: 511, Mismatches: 88, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
499 2 0.00
500 148 0.29
501 353 0.69
502 8 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (501 bp):
GCCTCTCCGATCGACTGAGCACCCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGACA
GCAGGATCGACAGCACATAGGGGGGACCGGGCTAAACCTCAGCTAGCACATTCTGCTCCTCGAGC
CGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCGGACCAAGGGTTGTGGCAGCGAGAATCGCAGCACGCAGAGAGGGATCGAGCCGAT
CCCCAGCTTAGGCATTATGCCTCCCCGGCCAGCTCAACGCCCAAACACTCGTTTCATGGGTTCAC
TTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCACACCGAGGGTTGCGAAAGCAGGATC
GACAGCTCGCAGAGGGGACCGGGTCGATCCCCAGCTTACGCATTCT
Found at i:16239116 original size:26 final size:26
Alignment explanation
Indices: 16239079--16239133 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
16239069 GGGTTGGCTC
16239079 AAGCATACAGAGTTCATTCCAT-GTCT
1 AAGCATACAGAGTTCATT-CATAGTCT
*
16239105 AAGCATATAGAGTTCATTCATAGTCT
1 AAGCATACAGAGTTCATTCATAGTCT
16239131 AAG
1 AAG
16239134 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 3 0.11
26 24 0.89
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (26 bp):
AAGCATACAGAGTTCATTCATAGTCT
Found at i:16239473 original size:26 final size:26
Alignment explanation
Indices: 16239437--16239486 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16239427 TGGCTTAGGT
*
16239437 ATACGGAGTTCATTCCATGTCTAACC
1 ATACAGAGTTCATTCCATGTCTAACC
*
16239463 ATACAGAGTTCATTTCATGTCTAA
1 ATACAGAGTTCATTCCATGTCTAA
16239487 GATTGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATGTCTAACC
Found at i:16239835 original size:26 final size:26
Alignment explanation
Indices: 16239799--16239854 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16239789 TGGGTTGACT
16239799 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
16239825 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16239851 TAAG
1 TAAG
16239855 ATCAGATCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16241626 original size:25 final size:26
Alignment explanation
Indices: 16241592--16241643 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16241582 GTTGACTTAG
*
16241592 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
16241617 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
16241643 G
1 G
16241644 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:16242684 original size:26 final size:26
Alignment explanation
Indices: 16242648--16242724 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
16242638 TGACTTAGGG
*
16242648 ATACGGAGTTCATCCCCAATCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
16242674 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
16242700 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16242725 ATCAGACTGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16243052 original size:159 final size:156
Alignment explanation
Indices: 16242698--16243189 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 156
16242688 CCCAGTCTAA
* * *
16242698 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * *
16242763 GCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGACTGA-GCGC
65 GCACGCAGAGGGGATCGGGT-AATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTAATGC-C
* *
16242827 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * ** *
16242856 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGCCGGATCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACCGGATCGAGGGTTGCGGCAGTAGGATC-GA
* * *
16242919 CAGCACACAGAAGGGGATCGGGTTATCCCCGGCTTGCGCATTATGCCTCTCCGACTGACTCAATG
63 CAGCACGCAG-AGGGGATCGGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACT-AATG
* * * *
16242984 CCCCGCACACTCATTTCGTGGGTTGACTTTG
126 CCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
16243015 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
* * ** * * * *
16243080 GCTCGCAGGAGGGG-CCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG-
65 GCACGCA-GAGGGGATC-GGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACT-AATGC
*
16243143 CCCGCACGCTCTTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCATTTCATGGGTTGGCTTAG
16243173 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
16243190 AATGTCTAAG
Statistics
Matches: 273, Mismatches: 50, Indels: 22
0.79 0.14 0.06
Matches are distributed among these distances:
157 4 0.01
158 129 0.47
159 133 0.49
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGATCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGAGGGGATCGGGTAATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGACTAATGCCCCG
CACGCTCATTTCATGGGTTGGCTTAG
Found at i:16249892 original size:26 final size:26
Alignment explanation
Indices: 16249842--16249894 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16249832 GTTGACTTAG
* **
16249842 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16249868 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16249894 G
1 G
16249895 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16250324 original size:158 final size:157
Alignment explanation
Indices: 16249868--16250359 Score: 515
Period size: 159 Copynumber: 3.1 Consensus size: 157
16249858 CCCTGTCTAA
* * * *
16249868 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CAGCAGCAGGATCGACA
* * * * *
16249933 GCACGTA-GGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * * *
16249997 TGTACGCCCGTTTCGTGGCTT-AGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGA-CTTAG
* ** * ** ** ** ** *
16250025 GCAAAGGGAGTTTATT-CCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGACAGTGGGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTCAG-CAGCAGGATCGA
* * * * * * *
16250088 CAACCCACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGC
63 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGT
* *
16250153 ACCCGCACACTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16250184 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-CAGCAGCAGGATCGACA
* * * *
16250249 GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* *
16250314 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
16250342 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
16250360 ATGTCAAAGC
Statistics
Matches: 264, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 42 0.16
158 97 0.37
159 116 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCAGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16250664 original size:171 final size:171
Alignment explanation
Indices: 16250368--16250714 Score: 414
Period size: 171 Copynumber: 2.0 Consensus size: 171
16250358 CCATGTCAAA
* ** *
16250368 GCATACGGAGTTCATTCCTAGTCTAAGGTCAGACCGGACTGAGGGTTGCGGCAGCAGGACCAACA
1 GCATACAGAGTTCATTCCTAGTCTAAGCCCAGACCGGACAGAGGGTTGCGGCAGCAGGACCAACA
* * * ** * *
16250433 GCAGGATCGACAGCACACAAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGG
66 GCAGGATCGACAGCACACAAGGGGGAACCGGCTCGATCCCCAACTTGCGCATTATGCCTCTCCGG
* * *
16250498 TTGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAG
131 CTGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAG
* * **
16250539 GCATACAGAGTTCATTCC-ATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGCAGGACCGG
1 GCATACAGAGTTCATTCCTA-GTCTAAG-CCCAGACCGGACAGAGGGTTGCGGCAGCAGGACCAA
* *
16250602 CAGCGGGATCGACAGCACGC-AGAGGGGAACCAGGCT-GATCCCCAACTTGCGCATTATGCCTCT
64 CAGCAGGATCGACAGCACACAAG-GGGGAACC-GGCTCGATCCCCAACTTGCGCATTATGCCTCT
** * *
16250665 TTGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
127 CCGGCTGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAG
16250710 GCATA
1 GCATA
16250715 TGAAGTTCAT
Statistics
Matches: 148, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
170 3 0.02
171 139 0.94
172 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (171 bp):
GCATACAGAGTTCATTCCTAGTCTAAGCCCAGACCGGACAGAGGGTTGCGGCAGCAGGACCAACA
GCAGGATCGACAGCACACAAGGGGGAACCGGCTCGATCCCCAACTTGCGCATTATGCCTCTCCGG
CTGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAG
Found at i:16250883 original size:355 final size:348
Alignment explanation
Indices: 16250062--16250946 Score: 977
Period size: 355 Copynumber: 2.5 Consensus size: 348
16250052 CCCCAGCCAA
* * * * * *
16250062 ACCGAGGGTTGTGACAGTGGGATCGGCAACCCACAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAG-GGGGGACCGGGCCGATCCCCGGCTTGTG
* * * * *
16250127 CATTATGCCTCTCCGACCGACTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
65 CATTCTGCCTCTCCGTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * *
16250192 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGG-T-T---A-CAGCAGCAGGATCGACA
130 AGTTCATT-CCATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGCAGCAGCAGGATCGACA
* * * ** * * * *
16250249 GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
193 GCACGCAGGGGGAACCGGCTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCC
* *
16250314 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGCATACGGAGT
258 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATATCAAAGCATACGGAGT
* *
16250379 TCATTCCTAGTCTAAGGTCAGACCGG
323 TCATTCCCAGTCTAAGATCAGACCGG
* * * *
16250405 ACTGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCACACAAGGGGGGACCGGGTCGAT
1 ACCGAGGGTT------GC-GG-----CAGTAGGATCGGCAGCACAC-AGGGGGGACCGGGCCGAT
* * *
16250470 CCTCGGCTTGTGCATTCTGCCTCTCCGGT-TGACTGAGCACCCACACGCTCGTTTCGTGGGTTGG
53 CCCCGGCTTGTGCATTCTGCCTCTCC-GTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
*
16250534 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTGTGGCAGCAGGAC
117 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTGTGGCAGC---A-
*
16250599 CGGCAGCGGGATCGACAGCACGCAGAGGGGAACCAGGCT-GATCCCCAACTTGCGCATTATGCCT
178 --GCAGCAGGATCGACAGCACGCAG-GGGGAACC-GGCTCGATCCCCAACTTGCGCATTATGCCT
** * *
16250663 CTTTGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-TGAAGTTCATCT
239 CTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCAT-T
*
16250727 CCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
302 CCATATCAAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** *
16250773 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGGAAGGACCGGGCCGATCCCCAGCTTGTGC
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGTGC
* * * *
16250838 ATTCTGCCTCTCCGTCCGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGA
66 ATTCTGCCTCTCCGTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* *
16250903 GTTCATTCCATGTCTAA-CCCCAGTCAGACTGAGGGTTGTGGCAG
131 GTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTGTGGCAG
16250947 TGGGATCGAT
Statistics
Matches: 450, Mismatches: 59, Indels: 55
0.80 0.10 0.10
Matches are distributed among these distances:
343 9 0.02
349 1 0.00
350 1 0.00
354 30 0.07
355 218 0.48
356 25 0.06
357 1 0.00
360 1 0.00
361 3 0.01
362 2 0.00
364 1 0.00
367 22 0.05
368 129 0.29
369 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (348 bp):
ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGTGC
ATTCTGCCTCTCCGTCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTGTGGCAGCAGCAGCAGGATCGACAGCA
CGCAGGGGGAACCGGCTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATATCAAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGG
Found at i:16251426 original size:26 final size:26
Alignment explanation
Indices: 16251376--16251428 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251366 GTTGGCTTAG
* *
16251376 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16251402 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16251428 G
1 G
16251429 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16251517 original size:11 final size:11
Alignment explanation
Indices: 16251498--16251530 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16251488 CCCGGGGCAC
16251498 CATCGTCGGAG
1 CATCGTCGGAG
*
16251509 CATCATCGGAG
1 CATCGTCGGAG
16251520 CATCGTCGGAG
1 CATCGTCGGAG
16251531 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16252138 original size:26 final size:26
Alignment explanation
Indices: 16252109--16252161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16252099 GTTGAGTTAG
16252109 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* **
16252135 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16252161 G
1 G
16252162 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16252608 original size:158 final size:157
Alignment explanation
Indices: 16252135--16252947 Score: 619
Period size: 159 Copynumber: 5.2 Consensus size: 157
16252125 CCCAGTCTAA
* * *
16252135 GCATACGGAGTTCATTTCCA-GTCTAAGATCGGACTGGACCGAGGGTTACAACAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * *
16252199 AGCACGTA-GGGGGACCGGGTCGATCCCTGGCTTGAGCATTCTGCCTCTCCGACCGGCTGAGCAC
65 AGCACGCAGGGGGGACCAGGTCGATCCCCGGCTT-AGCATTCTGCCTCTTCGGCCGGCTGAGCAC
16252263 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * ** * * ** * * *
16252292 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCAGGATCGAC
** * * * * *
16252356 AGCATACAGAGGGGGACCAGGTC-AGTCCCCGACTTGTGCATTATGCCT-TTCCGGCCAGCTCAG
65 AGCACGCAG-GGGGGACCAGGTCGA-TCCCCGGCTT-AGCATTCTGCCTCTT-CGGCCGGCTGAG
* * * *
16252419 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * *
16252451 GCATACGAAGTTAATTCCCA-GTCTAAGATTGGACCGGACCAAGAGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
** * *
16252515 AGCACGCAGGGGGGACCAGACCGATCCCCGGCTTACGTATTCTGCCTCTTTGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTA-GCATTCTGCCTCTTCGGCCGGCTGAGCAC
*
16252580 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * ** * ** * *
16252609 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGATGGTTGTGGCAGCGGGACCG-C
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * * * * * * * *
16252672 AGCACG-TGAAGGGGATCGGGTCGATCCTCGGCTTGTGCATTATGCTTC-TCCGACGGCTCAGCG
65 AGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTT-AGCATTCTGCCTCTTCGGCCGGCTGAGCA
* * * * *
16252735 CCCGCATGCTCATTTCATGGGTTGACTTAG
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
16252765 GCATA-TGAATTCATTTC-TAGTCTAA-ATCAGACCAGACCGAGGATTGCGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * ** * * * *
16252827 AACACACAGGGGGGACTGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGACCGGCTGAG-AG
65 AGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTA-GCATTCTGCCTCTTCGGCCGGCTGAGCA-
* * *
16252891 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
16252921 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16252948 CATACGGAGT
Statistics
Matches: 494, Mismatches: 137, Indels: 49
0.73 0.20 0.07
Matches are distributed among these distances:
154 22 0.04
155 51 0.10
156 87 0.18
157 100 0.20
158 110 0.22
159 120 0.24
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTAGCATTCTGCCTCTTCGGCCGGCTGAGCACCC
GCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:16252937 original size:312 final size:315
Alignment explanation
Indices: 16252135--16252948 Score: 973
Period size: 317 Copynumber: 2.6 Consensus size: 315
16252125 CCCAGTCTAA
* * * * ** * * * * *
16252135 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTACAACAGCAGGATCGACA
1 GCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCAGCAGCAAGATCGACA
* ** * *
16252200 GCACGTA-GGGGGACCGGGTCGATCCCTGGCTTGAGCATTCTGCCTCTCCGACCGGCTGAGCACC
66 ACACACAGGGGGGACCGGGCCGATCCCCGGCTT-AGCATTCTGCCTCTCCGACCGGCTGAGCACC
*
16252264 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* *
16252329 ACCGAGGGTTGTGGCAGCGGGACCGATAGCATACAGAGGGGGACCAGGTCAGTCCCCGACTTGTG
195 ACCGAGGGTTGTGGCAGCGGGACCGACAGCA-ACAGAAGGGGACCAGGTCAGTCCCCGACTTGTG
* *
16252394 CATTATGCCTTTCCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
259 CATTATGCCTTTCCGGACAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
** * *
16252451 GCATACGAAGTTAATTCCCAGTCTAAGATTGGACCGGACCAAGAGTTGCAGCAGCAGGATCGACA
1 GCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCAGCAGCAAGATCGACA
* * * * * ** *
16252516 GCACGCAGGGGGGACCAGACCGATCCCCGGCTTACGTATTCTGCCTCTTTGGCCGGCTGAGCACC
66 ACACACAGGGGGGACCGGGCCGATCCCCGGCTTA-GCATTCTGCCTCTCCGACCGGCTGAGCACC
* *
16252581 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * *
16252646 ACCGATGGTTGTGGCAGCGGGACCG-CAGC-ACGTGAAGGGGATCGGGTC-GATCCTCGGCTTGT
195 ACCGAGGGTTGTGGCAGCGGGACCGACAGCAAC-AGAAGGGGACCAGGTCAG-TCCCCGACTTGT
* *
16252708 GCATTATG-CTTCTCC-GACGGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAG
258 GCATTATGCCTT-TCCGGACAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * * *
16252765 GCATATGAA-TTCATTTCTAGTCTAA-ATCAGACCAGACCGAG-GATTGCGGTAGCAAGATCGAC
1 GCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGAG-TTGCAGCAGCAAGATCGAC
* *
16252827 AACACACAGGGGGGACTGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGACCGGCTGAG-AG
65 AACACACAGGGGGGACCGGGCCGATCCCCGGCTTA-GCATTCTGCCTCTCCGACCGGCTGAGCA-
* * * *
16252891 CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16252949 ATACGGAGTT
Statistics
Matches: 431, Mismatches: 60, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
311 2 0.00
312 132 0.31
313 13 0.03
314 52 0.12
315 33 0.08
316 66 0.15
317 133 0.31
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (315 bp):
GCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCAGCAGCAAGATCGACA
ACACACAGGGGGGACCGGGCCGATCCCCGGCTTAGCATTCTGCCTCTCCGACCGGCTGAGCACCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGCGGGACCGACAGCAACAGAAGGGGACCAGGTCAGTCCCCGACTTGTGCA
TTATGCCTTTCCGGACAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:16252951 original size:26 final size:26
Alignment explanation
Indices: 16252921--16252973 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16252911 GTTGGCTTAG
16252921 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16252947 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16252973 G
1 G
16252974 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16253329 original size:26 final size:26
Alignment explanation
Indices: 16253300--16253352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16253290 GTTGACTTAG
16253300 GCATACGGAGTTCAC-CTCCAGTCTAA
1 GCATACGGAGTTCACTC-CCAGTCTAA
*
16253326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16253352 G
1 G
16253353 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16254030 original size:25 final size:26
Alignment explanation
Indices: 16253996--16254047 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16253986 GTTCACTTAG
*
16253996 GCATACGGAGTTCA-TCCCCATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16254021 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16254047 G
1 G
16254048 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16254504 original size:26 final size:26
Alignment explanation
Indices: 16254475--16254527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16254465 GTTGGCTTAG
*
16254475 GCATAGGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16254501 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16254527 G
1 G
16254528 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16254714 original size:25 final size:26
Alignment explanation
Indices: 16254686--16254736 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
16254676 TTGACTTAGC
16254686 CATACGGAGTTCATCCCCA-TCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
16254711 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
16254737 ATTGAATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:16255050 original size:26 final size:26
Alignment explanation
Indices: 16255013--16255065 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16255003 GTTGGCTTAG
*
16255013 GCATACGAAGTTC-ATTCCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
16255039 GCATAC-AGAGTTCAATCCCAGTCTAA
1 GCATACGA-AGTTCAATCCCAGTCTAA
16255065 G
1 G
16255066 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 18 0.75
27 5 0.21
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:16255770 original size:26 final size:26
Alignment explanation
Indices: 16255733--16255785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16255723 GTTGACTTAG
16255733 GCATAAGAAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
*
16255759 GCATATAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
16255785 G
1 G
16255786 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:16256152 original size:158 final size:157
Alignment explanation
Indices: 16255759--16256155 Score: 388
Period size: 158 Copynumber: 2.5 Consensus size: 157
16255749 CCCAGTCTAA
* * * * ** *
16255759 GCATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGATAGAGGGTTGCGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA-A
* * * * *
16255824 GCACACAAGGGGGACCAGGCCTATCCCCGGCTTGCACATTTTGCCTCTCCGATCGGCTGAGTGCC
65 GCACACAAGGGGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGGCTCAGTGCC
* *
16255889 CGCACGCCCGTTTCGTGGGTTAGCTTAG
130 CACACGCCCGTTTCATGGGTTAGCTTAG
** * ** * * * * * *
16255917 GCATAGGGAGTTCGTT-CCAAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAACGGGACCGA
1 GCATACAGAGTTCATTCCCAA-TCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* *** *
16255980 AGCACACAAAGGGGGATCAGGCCGATCCTCAGCTTGTGTATTATGCCTCTCCGA-CTGGTTCAGT
64 AGCACAC-AAGGGGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGATC-GGCTCAGT
*
16256044 GCCCACACGCTCGTTTCATGGGTT-GACTTAG
127 GCCCACACGCCCGTTTCATGGGTTAG-CTTAG
* *
16256075 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA-A
* *
16256140 GCACGCATGGGGGATC
65 GCACACAAGGGGGATC
16256156 GAGCTGGTCC
Statistics
Matches: 186, Mismatches: 45, Indels: 16
0.75 0.18 0.06
Matches are distributed among these distances:
157 15 0.08
158 159 0.85
159 12 0.06
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAAG
CACACAAGGGGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGATCGGCTCAGTGCCC
ACACGCCCGTTTCATGGGTTAGCTTAG
Found at i:16256283 original size:26 final size:26
Alignment explanation
Indices: 16256233--16256285 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16256223 GTTGGCTTAC
**
16256233 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACATCTAA
* *
16256259 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACAGAGTTCATTCCACATCTAA
16256285 G
1 G
16256286 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACATCTAA
Found at i:16256459 original size:26 final size:26
Alignment explanation
Indices: 16256429--16256481 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16256419 GTTGACTTAG
16256429 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16256455 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16256481 G
1 G
16256482 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16256807 original size:26 final size:26
Alignment explanation
Indices: 16256771--16256823 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16256761 GTTGGCATAG
16256771 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16256797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16256823 G
1 G
16256824 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16257478 original size:26 final size:26
Alignment explanation
Indices: 16257449--16257501 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16257439 GTTGACTTAG
* *
16257449 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
* *
16257475 GCATATGAAGTTCATTCCCAATCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
16257501 G
1 G
16257502 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAATCTAA
Found at i:16258149 original size:26 final size:26
Alignment explanation
Indices: 16258119--16258171 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16258109 GTTGACTTAG
*
16258119 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16258145 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16258171 G
1 G
16258172 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16259065 original size:501 final size:501
Alignment explanation
Indices: 16258069--16259190 Score: 1349
Period size: 501 Copynumber: 2.2 Consensus size: 501
16258059 CTCCGGTTGG
* * * * * **
16258069 CCTCTTCGATCGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGATCGACTGAGCGCCCGTATGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCAT
* * * *
16258134 CCCCA-GTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACA
66 -TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACA
** * * * * * * ** * *
16258198 GCAGGATCGACAGTATGTAGGAGGGATCGGGCTGATCCCTAGCTTGTGCATTCTGCTTCTCTGGC
130 GCAGGATCGACAACACGCAGGAGGGACCGGGCTAAACCCTAGCTAGCACATTCTGCCTCCCTGGC
** *
16258263 TGGCTGAGCGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
195 TAACTGAGCGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
16258328 AGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGAACGGTAGCACGCAGAAAAGGACCGGATCGAT
260 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAAAAGGACCGGACCGAT
* * * * *
16258393 CCCCGACTTGGGCGTTATGCCTCCCCGACCAGCTCAACGCCCGAACACTCGTTTCATGGGTTGAC
325 CCCAGACTTGCGCATTATGCCTCCCCGACCAGCTCAACGCCCAAACACTCATTTCATGGGTTGAC
* ** *
16258458 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTTGATCACATCGAGGGTTGCGATAGCAGGATC
390 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCACACCGAGGGTTGCGATAGCAGGATC
* * *
16258523 GACAGCTCGTAGAGGGGACCAGGTCGATCCCCGATTTACGCATTCTG
455 GACAGCTCGCAGAGGGGACCAGGTCGATCCCCGACTTACGCATTCTA
* * *
16258570 CCTCTCCGA-CTGGCTGAGCGCCCGCATGCTCATTTTATGGGTTGGCTTAGGCGTACAGAGTTCA
1 CCTCTCCGATC-GACTGAGCGCCCGTATGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCA
*
16258634 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCA
65 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACA
* * * * *
16258699 GTAGGATTGACAACACGCAGGGGGGACCGGGCTAAACCCTGGCTAGCACATTCTGCCTCCCT-GA
130 GCAGGATCGACAACACGCAGGAGGGACCGGGCTAAACCCTAGCTAGCACATTCTGCCTCCCTGGC
* * * *
16258763 TCAACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCT
195 T-AACTGAGCGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * *** * *
16258828 AAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGATC-GCAGCACGCATAGGGGGACTGTACCGA
259 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAAAAGGACCGGACCGA
* * ** * * *
16258892 TCCCTAG-CTTGCGCATTATGCCTCTCCGGCCATTTTAGCGCCCAAACGCTCATTTCATGGGTTG
324 TCCC-AGACTTGCGCATTATGCCTCCCCGACCAGCTCAACGCCCAAACACTCATTTCATGGGTTG
* ** *
16258956 ACTTAGGCATACGAAGTTCATTCCCAATCTTAGATCAGATCGGACCGAGGGTTGC-AGTAGTAGG
388 ACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCACACCGAGGGTTGCGA-TAGCAGG
* * * * ** *
16259020 ATCGACAGCAT-GCAGGGTGGGATCGGGTCGGTCCTTGGCTTACGCATTCTA
452 ATCGACAGC-TCGCAGAG-GGGACCAGGTCGATCCCCGACTTACGCATTCTA
* *
16259071 CCTCTCCGATCGACTGAGCACCCGTATGCTCATTTTATGGGTTGGCTTAGGCATACAAAGTTCAT
1 CCTCTCCGATCGACTGAGCGCCCGTATGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCAT
* ** * *
16259136 TCCATGTCTAAGCATACAGAGTTCATTCGTAGTCTAAGATCGGACCGGACCGAGG
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
16259191 CTTGTGGTAG
Statistics
Matches: 523, Mismatches: 90, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
499 1 0.00
500 142 0.27
501 379 0.72
502 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (501 bp):
CCTCTCCGATCGACTGAGCGCCCGTATGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAG
CAGGATCGACAACACGCAGGAGGGACCGGGCTAAACCCTAGCTAGCACATTCTGCCTCCCTGGCT
AACTGAGCGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGAACGGCAGCACGCAGAAAAGGACCGGACCGATC
CCAGACTTGCGCATTATGCCTCCCCGACCAGCTCAACGCCCAAACACTCATTTCATGGGTTGACT
TAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCACACCGAGGGTTGCGATAGCAGGATCG
ACAGCTCGCAGAGGGGACCAGGTCGATCCCCGACTTACGCATTCTA
Found at i:16259636 original size:159 final size:157
Alignment explanation
Indices: 16259210--16259661 Score: 509
Period size: 157 Copynumber: 2.9 Consensus size: 157
16259200 GCAGGACCAA
* * * *
16259210 TAGCAGGATCGACAGCATGC-AGGGGTGAACC-GAGCCGATCCCCGACTTGTGCATTCTGCCTCT
1 TAGCAGGACCGACAGCACGCAAGGGG-G-ACCAGA-CCAATCCCCG-CTTGCGCATTCTGCCTCT
* * *
16259273 TCGACCGACTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
62 TCGAACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCA
*
16259338 -GTCTAAGATCAGACCGGACCAAGGGTTGTGG
126 TGTCTAAGCTCAGACCGGACCAAGGGTTGTGG
* * ** * * *
16259369 TAGCAGGATCGACAGCACGCAAGGGGGACCAGGCCGGTCCCGGCTTACGCATTCTGCCTTTTCGA
1 TAGCAGGACCGACAGCACGCAAGGGGGACCAGACCAATCCCCGCTTGCGCATTCTGCCTCTTCGA
* ** * *
16259434 TCGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
66 ACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
* *
16259499 AAGCTCCAG-TCGGACCGAGGGTTGTGG
131 AAGCT-CAGACCGGACCAAGGGTTGTGG
* * * *
16259526 TAGC-GGTACCGGCAGTACGCAGAGGGGGATCAGACCAATCCCCAGCTTGCGCATTATGCCTCTT
1 TAGCAGG-ACCGACAGCACGCA-AGGGGGACCAGACCAATCCCC-GCTTGCGCATTCTGCCTCTT
* ** * *
16259590 CGAACGGCTTAGCGATCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCATG
63 CGAACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
16259655 TCTAAGC
128 TCTAAGC
16259662 ATACGGAGTT
Statistics
Matches: 248, Mismatches: 38, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
156 5 0.02
157 108 0.44
158 30 0.12
159 100 0.40
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
TAGCAGGACCGACAGCACGCAAGGGGGACCAGACCAATCCCCGCTTGCGCATTCTGCCTCTTCGA
ACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
AAGCTCAGACCGGACCAAGGGTTGTGG
Found at i:16259785 original size:20 final size:20
Alignment explanation
Indices: 16259760--16259803 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
16259750 CCGAGCCGAT
16259760 CAGTCTAAGAGTTTGAACCA
1 CAGTCTAAGAGTTTGAACCA
16259780 CAGTCTAAGAGTTTGAACCA
1 CAGTCTAAGAGTTTGAACCA
16259800 CAGT
1 CAGT
16259804 GCACATGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (20 bp):
CAGTCTAAGAGTTTGAACCA
Found at i:16260508 original size:26 final size:26
Alignment explanation
Indices: 16260460--16260510 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16260450 TGGCTTCAGT
* *
16260460 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACAGAGTTCATTCCATATCTAAGC
16260486 ATACAGAGTTCATTCCCA-ATCTAAG
1 ATACAGAGTTCATT-CCATATCTAAG
16260511 AATTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATATCTAAGC
Found at i:16261227 original size:26 final size:26
Alignment explanation
Indices: 16261191--16261243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16261181 GTTGACTTAG
*
16261191 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16261217 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16261243 G
1 G
16261244 GTTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16261425 original size:26 final size:26
Alignment explanation
Indices: 16261375--16261427 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16261365 GTTGGCTTAG
* *
16261375 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAATTCATTCCATGTCTAA
16261401 GCATACGGAATTCATTCCCA-GTCTAA
1 GCATACGGAATTCATT-CCATGTCTAA
16261427 G
1 G
16261428 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATGTCTAA
Found at i:16263378 original size:26 final size:26
Alignment explanation
Indices: 16263342--16263394 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16263332 GTTGACTTAG
16263342 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16263368 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16263394 G
1 G
16263395 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16264218 original size:349 final size:338
Alignment explanation
Indices: 16263308--16264443 Score: 904
Period size: 349 Copynumber: 3.3 Consensus size: 338
16263298 TGGTGGGCTA
* * * *
16263308 AGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATCCCCAATCTAAGCAT
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTA--GAGTTCATCCACAGTCTAAGCAT
* * * * *
16263372 ATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGTAGGATCGG-TAGTA
64 ACGGAGTTCATTCCCAGTCT-A-A---GATCGGATCGAGGGTTGCGGCAGCAGGATCGGCTAGCA
** * * * * *
16263436 CGCAGTTAGGGACCAGGCCGATCCCCGGTTTATGCATTCTTCCTCTCCGGTCGACTGAGCGCCCT
124 CGCAG-GGGGGACCAGGCCGATCCCCAGTTTATGCATTCTACCTCTCCTGTCGGCTGAGCGCCCG
* ** * * *
16263501 CACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCGGAC
188 CACGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * *
16263566 CGAGGGTTGTGGTAGCGGTACCAGCAGTACGCAGAGAGGGATCAGACCCATCCCCAGCTTGCGCA
253 CGAGGGTTGTGGTAGCGGTACCAGCAGCACACAAAGAGGGATCAGACCCATCCCCAGCTTACGCA
* * *
16263631 TTATGCCTCTCCGATCGGCTT
318 TTATGCCTCTCCGACCAGCTG
* * *
16263652 AGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCA-TACGAAATTCATTCCA-TGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTA-G-AGTTCA-TCCACAGTCTAAGCA
*
16263715 TACGGAGTTCATTCCCTA-TCTCAGATCGAAATGGATCGAGGGTTACGGCGCAAGACCAGCAGCA
63 TACGGAGTTCATTCCC-AGTCTAAGATC-----GGATCGAGGGTT-----GC--G----GCAGCA
* * ** *
16263779 GGATCGAC-AGCACGCAGGGGGGACC-GAGCCGAT-CCCAGGCTTGCGCATTCTACCTCT-CTCA
111 GGATCGGCTAGCACGCAGGGGGGACCAG-GCCGATCCCCA-GTTTATGCATTCTACCTCTCCT-G
* * *
16263840 TCGGCTGAGCGCCCGCACG-CTCA-TTCATGGGTTGGCTTAGGCATACGAAGTTCATCCCATGTC
173 TCGGCTGAGCGCCCGCACGCCT-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * *
16263903 TAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGAATCGGTAGCGGGATCGACAGCATACAAAGG
237 TAAGCCCCAGCCAGACCGAGGGTTGTGGT---AG---CGGTA-C--CA--G-CAGCACACAAAGA
* * ** * *
16263968 GGGATCGGGCTGATCCTC-GACTTACGCATTATGCCTCTTCGACCAGCTG
290 GGGATCAGACCCATCCCCAG-CTTACGCATTATGCCTCTCCGACCAGCTG
* ** *
16264017 AGTGCCCGCACGCTCGTTTCATTAGTTGACATAGGCATGTAGAGTTCATCCACAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT-TAGAGTTCATCCACAGTCTAAGCATA
16264082 CGGAGTTCATTCCCAGTCTAAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCTA-CACGCAGG
65 CGGAGTTCATTCCCAGTCTAAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCTAGCACGCAGG
* *
16264146 GGGGACCAGGCTGATCCCCAGTTTATGCATTCTACCTCTCCTGTCGGCTGAACGCCC-CACGCCT
130 GGGGACCAGGCCGATCCCCAGTTTATGCATTCTACCTCTCCTGTCGGCTGAGCGCCCGCACGCCT
* * * *
16264210 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCCAGCCAGACTGAAGGT
195 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* * * ** * * * ** * ** **
16264275 TGTGGCAACGGGACC-GACAGCATGCAGAG-GAGGATCGGGCTGATCTCTGGCTTACAAATTATG
260 TGTGGTAGCGGTACCAG-CAGCACACAAAGAG-GGATCAGACCCATCCCCAGCTTACGCATTATG
* * *
16264338 CCTCTCTGACCGGCTC
323 CCTCTCCGACCAGCTG
** * * * * *
16264354 AGCGCCCAAACGTTTGCTTCATGGGTTGGCTTAGGCA-TACGGAGTTCATTCCA-TGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTA--GAGTTCA-TCCACAGTCTAAGCA
* *
16264417 TACGGAGTTCATTCCTAGTTTAAGATC
63 TACGGAGTTCATTCCCAGTCTAAGATC
16264444 AGACCGAATT
Statistics
Matches: 639, Mismatches: 101, Indels: 111
0.75 0.12 0.13
Matches are distributed among these distances:
335 2 0.00
336 1 0.00
337 117 0.18
338 5 0.01
339 4 0.01
342 2 0.00
343 5 0.01
344 78 0.12
345 4 0.01
346 1 0.00
348 4 0.01
349 128 0.20
350 8 0.01
351 1 0.00
353 68 0.11
354 45 0.07
355 20 0.03
356 2 0.00
359 5 0.01
360 13 0.02
362 1 0.00
364 7 0.01
365 115 0.18
366 1 0.00
367 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (338 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTAGAGTTCATCCACAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCTAGCACGCAGGG
GGGACCAGGCCGATCCCCAGTTTATGCATTCTACCTCTCCTGTCGGCTGAGCGCCCGCACGCCTA
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGTAGCGGTACCAGCAGCACACAAAGAGGGATCAGACCCATCCCCAGCTTACGCATTATGCCT
CTCCGACCAGCTG
Found at i:16264944 original size:158 final size:156
Alignment explanation
Indices: 16264554--16264946 Score: 377
Period size: 158 Copynumber: 2.5 Consensus size: 156
16264544 CAGCTAAACG
* * * *
16264554 CCTGCACGCCCATGTCATTGGTTGGCTTAGGTATA-GGAAGTTCATTCCATGTCTAAGCCCCAGT
1 CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCAT-TCTAAGCCCCAGT
* * * * *
16264618 CGGATCGAGGGTTGTAGCAGCGGGACCGACAGCATGCAAAGGAGGATTGACCTATCCCCGGCTTG
64 CGGATCGAGGGTTGGAGCAGCAGGACCGACAGCACGCAAAGGAGGATCGACCGATCCCCGGCTTG
*
16264683 CGCATTATGCCTCTCCGACTGGCTTAGT
129 CGCATTATGCCTCTCCGACTGGCTTAGA
* * * ** * **
16264711 GCTCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTT-TAAG-ATCAG
1 CCT-GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA-TTCTAAGCCCCAG
* * * * *
16264774 ACCGGATGGAGGGTTGCGA-CAGCAGGATCGACAGCACGTAAAGG-GGATCGAGCCGGTCCCCGG
63 -TCGGATCGAGGGTTG-GAGCAGCAGGACCGACAGCACGCAAAGGAGGATCGA-CCGATCCCCGG
* *
16264837 CTTGCGCATTCTGCCTCTCTGA-TCGG-TTGAGCA
125 CTTGCGCATTATGCCTCTCCGACT-GGCTT-AG-A
* *
16264870 CCTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTGAGCCCCAGTC
1 CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-TCTAAGCCCCAGTC
*
16264935 GGACCGAGGGTT
65 GGATCGAGGGTT
16264947 ATGGCAGTAA
Statistics
Matches: 185, Mismatches: 38, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.01
157 18 0.10
158 153 0.83
159 12 0.06
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTCTAAGCCCCAGTCG
GATCGAGGGTTGGAGCAGCAGGACCGACAGCACGCAAAGGAGGATCGACCGATCCCCGGCTTGCG
CATTATGCCTCTCCGACTGGCTTAGA
Found at i:16265571 original size:26 final size:26
Alignment explanation
Indices: 16265541--16265593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16265531 GTTGGCTTAG
*
16265541 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
16265567 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
16265593 G
1 G
16265594 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:16266332 original size:159 final size:157
Alignment explanation
Indices: 16265946--16266333 Score: 365
Period size: 159 Copynumber: 2.5 Consensus size: 157
16265936 CCCAGTCTAA
* * * * *
16265946 GCATACGGAGTTCATTCCTAGTCTAAGATTGAACTGGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
16266011 GCACG-TAGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCTACCTTTCCGGCCAGCTGAGCGC
65 GCACGCAAAGGGGGACCAAGCCGATCCTCGGCTTACGCATTATACCTTTCCGGCCAGCTCAACGC
* *
16266075 CGTACGCCCATTTCGTGGGTTGGCTTAG
130 CGAACGCCCATTTCGTGGGTTGACTTAG
* * * * * *
16266103 GCATAGGGAGTTCATT-CCATGTCCAA-ACCCTAGCT-GGACCGAGAGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA---TAGATCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * * * *
16266165 GCAACACGCAAAGGGGGCCCTGGTCGATCC-CTGGCTTACGCATTATGCCTCTT-CGGTCGGCTC
62 ACAGCACGCAAAGGGGGACCAAGCCGATCCTC-GGCTTACGCATTATACCT-TTCCGGCCAGCTC
*
16266228 AACGCTCGAACGCTCATTTCGTGGGTTGACTTAG
125 AACGC-CGAACGCCCATTTCGTGGGTTGACTTAG
* * *
16266262 GCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCAAGGGTTGCGGCAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATA-GATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
16266327 GCACGCA
65 GCACGCA
16266334 GGAGGGACCT
Statistics
Matches: 179, Mismatches: 40, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
156 3 0.02
157 51 0.28
158 43 0.24
159 78 0.44
160 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAAGGGGGACCAAGCCGATCCTCGGCTTACGCATTATACCTTTCCGGCCAGCTCAACGCC
GAACGCCCATTTCGTGGGTTGACTTAG
Found at i:16266989 original size:26 final size:26
Alignment explanation
Indices: 16266938--16266990 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16266928 GTTGGCTTAG
*
16266938 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
16266964 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
16266990 G
1 G
16266991 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16267634 original size:159 final size:158
Alignment explanation
Indices: 16267374--16267835 Score: 418
Period size: 158 Copynumber: 2.9 Consensus size: 158
16267364 GACTGGATCA
* * * * * * *
16267374 AGGGTTGCGGTAGCTAGATCGGCAGCACGCAG-GAGGG-TCTGGGCCGATCCTTGGCTTGCGCAT
1 AGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGATC-AGGCCGATCCCTGGCTTACGCAT
* ** * *
16267437 TCTGCCTC-TCTGGCCGGCTGAGTGCCTGCACGCCCATTTCATGGGTCAGCTTAGGCATA-GAGA
65 TCTGCCTCTTC-GGCCGGTTGAGAACCTGCACACTCATTTCATGGGT-AGCTTAGGCATACG-GA
* *
16267500 GTTAATTCCATGTCTAAGCCCCAACCAG-ACTG
127 GTTCATTCCATGTCTAAGCCCCAACC-GCACCG
** ** *
16267532 AGGGTTGTGGCAGTGAGA-CTGGCAGCACGCAGAGGGGGATCAGGCCGATCCCTGGCTTATGCAT
1 AGGGTTGCAGCAGCAAGATC-GGCAGCACGCAGAGGGGGATCAGGCCGATCCCTGGCTTACGCAT
* * *
16267596 TATGCCTCTTCGGCCGGTTGAGAACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGT
65 TCTGCCTCTTCGGCCGGTTGAGAACCTGCACACTCATTTCATGGGTAG-CTTAGGCATACGGAGT
** ** *
16267661 TCATTCCCA-GTCTAAGATCGGATCGCACCG
129 TCATT-CCATGTCTAAGCCCCAACCGCACCG
* ** * * * * * *
16267691 AGGGTTGCAGCAGCAAGATCGACAGCACGTTGA-GGGGACCACGTCGGTCCCCGACTTACGCATT
1 AGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGATCAGGCCGATCCCTGGCTTACGCATT
* * * * *
16267755 CTGCCTCTTCGGCCGGTTGAGCACCTGCACATTCATTTCGTGGGTTGGCTTAGGCATATGGAGTT
66 CTGCCTCTTCGGCCGGTTGAGAACCTGCACACTCATTTCATGGG-TAGCTTAGGCATACGGAGTT
16267820 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
16267836 ATGCAGAGTT
Statistics
Matches: 247, Mismatches: 46, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 118 0.48
159 116 0.47
160 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGGGATCAGGCCGATCCCTGGCTTACGCATT
CTGCCTCTTCGGCCGGTTGAGAACCTGCACACTCATTTCATGGGTAGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACCGCACCG
Found at i:16268218 original size:26 final size:26
Alignment explanation
Indices: 16268188--16268238 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268178 GTTGACTTAG
*
16268188 GCATACGGAGTTCATCCCCAATCTAT
1 GCATACAGAGTTCATCCCCAATCTAT
* *
16268214 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
16268239 AGATCGAACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAT
Found at i:16268519 original size:880 final size:883
Alignment explanation
Indices: 16266927--16268900 Score: 2031
Period size: 881 Copynumber: 2.3 Consensus size: 883
16266917 TCATTTTATA
* * * *
16266927 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGCCTAAGA
1 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * **** *
16266992 TCGGACCAGACCAAGGGTTGC-AGTAGCAGGACTAGCAGCAGGATTGGTAGCACACA-GAGGGGG
66 TCAGACCAGACTAAGGGTTACGA-CAGCAGGACCAGTAGCAGGATCAACAGCACGCAGGA-GGGG
* ** * * * * * * * ** * *
16267055 ATCGGGCCTATCCTCAGCTTACGCATTTTGCCTCTCCGACCGGTTGAGCCCCCGCACACTCGTTT
129 ATCGAGCAGATCCCCAGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGGGCCCGCACGCTCATTT
* * * * * * * * *
16267120 CATGGGTTGGCTTAGACGTACGAAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTG
194 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTATG
* * * ** * * ** **
16267185 GTAGCAGGATCG---GC---A---A-CACAC--AGAGGAAGACCGGGCTGATCTTCGGTTTACGT
259 GCAGCAAGATCGATAGCGAGATTGATAACACGTAGAGGTGGATCGGGTTGATCCCCGACTTAC-T
* * * * * * * **
16267238 -ATTATGCCTCTGCGGTCGGCCTCTCC-GGCCAGCTGAA-TGCTCGCACGCACG-TTTCATGGGT
323 CATTATGCCTCTCCAGTCGGCCTCTCCTGTCGA-CT-AAGCGCCCGCATG-TTGATTTCATGGGT
* * * * * *
16267299 TGACTTCGACATATGGAGTTCATCTCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCG
385 TGACTTAGACATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
* * * * *
16267364 GACTGGATCAAGGGTTGCGGTAGCTAGATCGGCAGCACGCAGGAGGGTCTGGGCCGATCCTTGGC
450 AACTGGATCAAGGGTTACAGCAGCTAGATCGGCAGCACGCAGGAGGGTCTGGGCCGATCCTCGGC
* * * * *
16267429 TTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCTGCACGCCCATTTCATGGGTCAGCTTAGGCA
515 TTACGCATTCTGCCTCTCTGACCGACTGAGGGCCTGCACACCCATTTCATGGGTCAGCTTAGGCA
* * * *
16267494 TAGAGAGTTAATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGTGAGACTGGCAGCA
580 TAGAGAGTTAATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGAGAGACCGACAGCA
* * * * * *
16267559 CGCAGAGGGGGATCAGGCCGATCCCTGGCTTATGCATTATGCCTCTTCGGCCGGTTGAGAACCCG
645 CGCAGAGGAGGATCAGGCCAATCCCTGGCTTACGCATTATGCCTCTCCGGCAGCTTGAGAACCCG
* *
16267624 CACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGATCGCA
710 AACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAT-GGATCGCA
* * * * * * *
16267688 CCGAGGGTTGCAGCAGCAAGATCGACAGCACGT-TGAGGGGACCACGTCGGTCCCC-GACTTACG
774 CCAAGGGTTACAGCAACAAGATCGACAGCACGTAGGACGGGACCACGCCGGTCCCCAG-CTTACA
* * * *
16267751 CATTCTGCCTCTTCGGCCGGTTGAGCACCTGCACATTCATTTCGTG
838 CATTCTGCCTCTCCGACCGGTTGAGCACCCGCACACTCATTTCGTG
* *
16267797 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATGC-AGAGTTCATTCCCAGTCTCAG
1 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAG
* * * ** * **** *
16267861 ATCAGATCTGA-TCGAGGGTTACGGTAGCGGGACCAGTAGCAGGATGGGTAGCACGCATG-GGGG
65 ATCAGACCAGACT-AAGGGTTACGACAGCAGGACCAGTAGCAGGATCAACAGCACGCAGGAGGGG
* * *
16267924 ACTGGA-CAGATCCCCGGCTTGCACATTCTGCCTCTCCGG-TCGGCTGAGGGCCCGCATGCTCAT
129 A-TCGAGCAGATCCCCAGCTTGCACATTCTGCCTCTCCGGCT-GGCTGAGGGCCCGCACGCTCAT
*
16267987 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTA
192 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTA
16268052 TGGCAGCAAGATCGATAGCGAGATTGATAACACGTAGAGGTGGATCGGGTTGATCCCCGACTTAC
257 TGGCAGCAAGATCGATAGCGAGATTGATAACACGTAGAGGTGGATCGGGTTGATCCCCGACTTAC
16268117 TCATTATGCCTCTCCAGTCGGCCTCTCCTGTCGACTAAGCGCCCGCATGTTGATTTCATGGGTTG
322 TCATTATGCCTCTCCAGTCGGCCTCTCCTGTCGACTAAGCGCCCGCATGTTGATTTCATGGGTTG
* *
16268182 ACTTAGGCATACGGAGTTCATCCCCAATCTATGCATACAGAGTTCATTCCCAGTCTAAGATCGAA
387 ACTTAGACATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAA
* * *
16268247 C-GAGATCGAGGGTTACAGCAGC-AGGATTGGCAGCACGCAGG-GGGATC-GGGTCGATACC-CG
452 CTG-GATCAAGGGTTACAGCAGCTA-GATCGGCAGCACGCAGGAGGG-TCTGGGCCGAT-CCTCG
* * * * **
16268307 GCTTATGCATTCTGCCTCTCTGATCGACTGAGGGCAC-GCACACCCGTTTCGTGGGTTGGCTTAG
513 GCTTACGCATTCTGCCTCTCTGACCGACTGAGGGC-CTGCACACCCATTTCATGGGTCAGCTTAG
* ****
16268371 GCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGGTGGACCGAGGGTTGTGGCAGCAG-GACCGA
577 GCATAGA-GAGTTAATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG-AGAGACCGA
* * * *
16268434 CAGCTCGTAGAGGAGGA-CTGGGTCAATCCCTGGCTTACGCATTATGCCTCTCCGGTCAGCTT-A
640 CAGCACGCAGAGGAGGATC-AGGCCAATCCCTGGCTTACGCATTATGCCTCTCCGG-CAGCTTGA
* ** * * *
16268497 GCACTGGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCTTTCCCAGTCTAAGAATGG
703 GAACCCGAACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGG
* * * * * * ** *
16268562 ATCGGATCAAGGTTTACGGCAACAGGATCGACAGCACGTAGGACGGGATCGGGCCTGTCCCCAGC
768 ATCGCACCAAGGGTTACAGCAACAAGATCGACAGCACGTAGGACGGGACCACGCCGGTCCCCAGC
* * * *
16268627 TTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGTACACTCCTTTCGTG
833 TTACACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACACTCATTTCGTG
*
16268678 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCTGTCTAAGA
1 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
16268743 TCGGGCCAGACTAAGGGTTACGACAGCAGGACCAGTAGCAGGATCAACAGCACGTAGGAGGGGAT
66 TCAGACCAGACTAAGGGTTACGACAGCAGGACCAGTAGCAGGATCAACAGCACGCAGGAGGGGAT
** ** * * *
16268808 CGAGTTGATCCCCAGCTTGTGCATTCTGCCTTTCCGGCTGGCTGAGTGCCTGCACGCTCATTTCG
131 CGAGCAGATCCCCAGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGGGCCCGCACGCTCATTTCG
16268873 TGGGTTGACTTAGGCATACGGAGTTCAT
196 TGGGTTGACTTAGGCATACGGAGTTCAT
16268901 CCCCAATCTA
Statistics
Matches: 896, Mismatches: 169, Indels: 66
0.79 0.15 0.06
Matches are distributed among these distances:
869 115 0.13
870 102 0.11
871 1 0.00
872 2 0.00
875 1 0.00
878 1 0.00
879 6 0.01
880 249 0.28
881 330 0.37
882 88 0.10
883 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (883 bp):
GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCAGACTAAGGGTTACGACAGCAGGACCAGTAGCAGGATCAACAGCACGCAGGAGGGGAT
CGAGCAGATCCCCAGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGGGCCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTATGGC
AGCAAGATCGATAGCGAGATTGATAACACGTAGAGGTGGATCGGGTTGATCCCCGACTTACTCAT
TATGCCTCTCCAGTCGGCCTCTCCTGTCGACTAAGCGCCCGCATGTTGATTTCATGGGTTGACTT
AGACATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGG
ATCAAGGGTTACAGCAGCTAGATCGGCAGCACGCAGGAGGGTCTGGGCCGATCCTCGGCTTACGC
ATTCTGCCTCTCTGACCGACTGAGGGCCTGCACACCCATTTCATGGGTCAGCTTAGGCATAGAGA
GTTAATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGAGAGACCGACAGCACGCAGA
GGAGGATCAGGCCAATCCCTGGCTTACGCATTATGCCTCTCCGGCAGCTTGAGAACCCGAACACT
CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATGGATCGCACCAAGGG
TTACAGCAACAAGATCGACAGCACGTAGGACGGGACCACGCCGGTCCCCAGCTTACACATTCTGC
CTCTCCGACCGGTTGAGCACCCGCACACTCATTTCGTG
Found at i:16268922 original size:26 final size:26
Alignment explanation
Indices: 16268886--16268938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268876 GTTGACTTAG
16268886 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16268912 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16268938 G
1 G
16268939 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16268926 original size:197 final size:197
Alignment explanation
Indices: 16268584--16268941 Score: 470
Period size: 197 Copynumber: 1.8 Consensus size: 197
16268574 TTTACGGCAA
* *
16268584 CAGGATCGACAGCACGTAGGACGGGATCGGGCCTGTCCCCAGCTTGCACATTCTGCCTCTCCGAT
1 CAGGATCAACAGCACGTAGGACGGGATCGAGCCTGTCCCCAGCTTGCACATTCTGCCTCTCCGAT
* * * * * * *
16268649 CGGTTGAGCACCCGTACACTCCTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
66 CGGCTGAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTA
*
16268714 AGCATACGAAGTTCATTCCCTGTCTAAGATCGGGCCAGACTAAGGGTTACGACAGCAGGACCAGT
131 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGACTAAGGGTTACGACAGCAGGACCAGT
16268779 AG
196 AG
* * ** *
16268781 CAGGATCAACAGCACGTAGGAGGGGATCGAG-TTGATCCCCAGCTTGTGCATTCTGCCTTTCCG-
1 CAGGATCAACAGCACGTAGGACGGGATCGAGCCTG-TCCCCAGCTTGCACATTCTGCCTCTCCGA
* ** * *
16268844 GCTGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-AT
65 TC-GGCTGAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATAT
* *
16268908 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
128 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
16268942 AAACCGGATC
Statistics
Matches: 136, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
196 3 0.02
197 130 0.96
198 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
CAGGATCAACAGCACGTAGGACGGGATCGAGCCTGTCCCCAGCTTGCACATTCTGCCTCTCCGAT
CGGCTGAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCGGGCCAGACTAAGGGTTACGACAGCAGGACCAGT
AG
Found at i:16269526 original size:343 final size:343
Alignment explanation
Indices: 16268868--16269526 Score: 824
Period size: 343 Copynumber: 1.9 Consensus size: 343
16268858 TGCACGCTCA
* *
16268868 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAG
* * ** *
16268933 TCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATTGACAACACACAGAAGGGACCGGGCC
66 TCTAAGATCAAACCGGATCGAGGGTTGCAGCAGCAACATCGACAACACACAGAAGGGACCGGGCC
* *
16268998 TATCCCCAGCTTACGCATTCTGCCTTTTCGACCGGCTGAGCACCCGTACACCCATTTCGTGGGTT
131 TATCCCCAGCTTACGCATTCTGCCCTTTCGACCGGCTGAGCACCCGTACACCCATTTCATGGGTT
** *
16269063 GGCTTAGGCATAGGGAGTTCATTCTATGACTAAGCCCCAGTCAAACCGAGGGTTGTGGCAGTGGG
196 GGCTTAGGCATAGGGAGTTCATTAAATGACTAAGCCCCAGTCAAACCGAGGGTTGTGGCAGCGGG
* * * * *
16269128 ACTGGCAGCACGTACAGGGGGACCGGGTCAGTCCCTCGCTTACACATTCTACCTCTTCGATCGGC
261 ACTGACAGCACGCAAAGGGGGACCGGCTCAGTCCCTCGCTTACACATTATACCTCTTCGATCGGC
16269193 TGAACGCCCACACACTCG
326 TGAACGCCCACACACTCG
* *
16269211 TTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAG
*** * * ** ** *
16269276 TCTAAGATTGGATCGGATCGAGGGTTGCAGCAGCAACATCGACAGCATGCAGGGGGGACCGGG-G
66 TCTAAGATCAAACCGGATCGAGGGTTGCAGCAGCAACATCGACAACACACAGAAGGGACCGGGCC
* ** * * ** **
16269340 TGAT-CCCTGACTTGTGTATTTTGCCCTTTCGGTCGGCTGAGCACCCGTACACCTGTTTCATGGG
131 T-ATCCCCAG-CTTACGCATTCTGCCCTTTCGACCGGCTGAGCACCCGTACACCCATTTCATGGG
* *
16269404 TTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGCG
194 TTGGCTTAGGCATAGGGAGTTCATTAAATGACTAAGCCCCAGTCAAACCGAGGGTTGTGGCAGCG
* * * * * *
16269469 GGATTGATAGCATGCAAAGAGGGG-TCGAGCTGA-TCCC-CGACTTACGCATTATACCTCT
259 GGACTGACAGCACGCAAAG-GGGGACCG-GCTCAGTCCCTCG-CTTACACATTATACCTCT
16269527 CCGGTGGCTT
Statistics
Matches: 265, Mismatches: 46, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
342 7 0.03
343 251 0.95
344 7 0.03
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (343 bp):
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACCGGATCGAGGGTTGCAGCAGCAACATCGACAACACACAGAAGGGACCGGGCC
TATCCCCAGCTTACGCATTCTGCCCTTTCGACCGGCTGAGCACCCGTACACCCATTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTAAATGACTAAGCCCCAGTCAAACCGAGGGTTGTGGCAGCGGG
ACTGACAGCACGCAAAGGGGGACCGGCTCAGTCCCTCGCTTACACATTATACCTCTTCGATCGGC
TGAACGCCCACACACTCG
Found at i:16270386 original size:26 final size:26
Alignment explanation
Indices: 16270350--16270399 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16270340 GGCGTAGGCA
*
16270350 TACGGAGTTCATCCCCAATCTAAGCG
1 TACGAAGTTCATCCCCAATCTAAGCG
*
16270376 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
16270400 GTCAGACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCG
Found at i:16270718 original size:26 final size:26
Alignment explanation
Indices: 16270688--16270740 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16270678 GTTGGCTTAG
16270688 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16270714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16270740 G
1 G
16270741 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16270929 original size:353 final size:355
Alignment explanation
Indices: 16270425--16271069 Score: 825
Period size: 353 Copynumber: 1.8 Consensus size: 355
16270415 GGGTTGCAGT
16270425 AGTAGGATCGACAGCACGCAGGGGGGATCGGGGCGATCCCCGACTTACGCATTCTGCCTCTCCGA
1 AGTAGGATCGACAGCACGCAGGGGGGATCGGGGCGATCCCCGACTTACGCATTCTGCCTCTCCGA
** * * * **
16270490 CGGGTAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATTGGGAGTACATTCCATGTCT
66 CGACTAGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
* * * * *
16270555 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAG-GAGGGATC-GACCGA
131 AAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGCAGAAAGGGACCGGACCGA
* * ** * *
16270618 TCCCCAGCTTGCCCATTATGCCTCTTCGACCGGCTGAGTGCCCACATGCTCATTTCATGGGTTGG
196 TCCCCAGCTTACCCATTATGCCTCTTCGACCGGCTCAACGCCCACACGCTCATTTCATGGGTTGA
*
16270683 CTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
261 CTTAGGCATACGA-AGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
16270747 CAAGATCGAGGGTTGTGGTCGTAGGACCAGC
325 CAAGATCGAGGGTTGTGGTCGTAGGACCAGC
* * * * **
16270778 AGTAGGATCGATAGCACGCAGGGGGGA-CTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCG
1 AGTAGGATCGACAGCACGCAGGGGGGATC-GGGGCGATCCCCGACTTACGCATTCTGCCTCTCCG
* * *
16270842 ATCGACTA-AGCACCCACATGC-CTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCTTTCCATG
65 A-CGACTAGAGCACCCACACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATG
** * * * * *
16270905 TCTAATTCCTAGTCGGTCCGAGGGTTGTGGCAACAGGACCGATAGAATGCAGAAAGGGACCGGGC
128 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGCAGAAAGGGACCGGAC
** ** * **
16270970 CGATCCCTGGCTTACGGATTATGCCTCTTCGGCCGGCTCAACGCCCGTACGCTCATTTCATGGGT
193 CGATCCCCAGCTTACCCATTATGCCTCTTCGACCGGCTCAACGCCCACACGCTCATTTCATGGGT
*
16271035 TGACTTAGGCATACGAAGTTCATTCCCCGTCTAAG
258 TGACTTAGGCATACGAAGTTCATTCCACGTCTAAG
16271070 ATCGGACCGG
Statistics
Matches: 243, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
352 2 0.01
353 145 0.60
354 10 0.04
355 85 0.35
356 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
AGTAGGATCGACAGCACGCAGGGGGGATCGGGGCGATCCCCGACTTACGCATTCTGCCTCTCCGA
CGACTAGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
AAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGCAGAAAGGGACCGGACCGA
TCCCCAGCTTACCCATTATGCCTCTTCGACCGGCTCAACGCCCACACGCTCATTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
AAGATCGAGGGTTGTGGTCGTAGGACCAGC
Found at i:16271251 original size:26 final size:26
Alignment explanation
Indices: 16271201--16271253 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16271191 GTTGGCTTAG
*
16271201 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16271227 GCATACGGAGTTTATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16271253 G
1 G
16271254 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16271612 original size:26 final size:26
Alignment explanation
Indices: 16271582--16271632 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16271572 TGACTTAGGT
16271582 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16271608 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16271633 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16272132 original size:26 final size:26
Alignment explanation
Indices: 16272081--16272133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272071 GTTGGCTTAG
*
16272081 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
16272107 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACAGAGTTCATTCCAT-GCCTAA
16272133 G
1 G
16272134 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:16272514 original size:26 final size:26
Alignment explanation
Indices: 16272484--16272536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272474 GTTGACTTAG
16272484 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16272510 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16272536 G
1 G
16272537 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16272874 original size:159 final size:157
Alignment explanation
Indices: 16272507--16272888 Score: 403
Period size: 159 Copynumber: 2.4 Consensus size: 157
16272497 ATCCCCAGTC
* *
16272507 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGGGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGATCGGACCGAGGGTTGGGGCAGCAGGATCG
** * * *
16272572 GCAGCACGCTGGGGGGATAGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACTGACTGAGC
65 GCAGCACGCAAGGGGGATAGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACAGACTCAGC
* *
16272637 ACCCGCACGCCCGTTTCGTGGGTTGGCT
130 ACCCGCACGCCCGTTTCATGGGTTGACT
* ** * * * **
16272665 T-AGCCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGTCGGACTGAGGGTTGTGGCAGTGGGAT
1 TAAG-CATACGGAGTTCATTCCCA-GTCTAAGATTGA-TCGGACCGAGGGTTGGGGCAGCAGGAT
* * * * * * * * *
16272728 CGGCATCATGCAAAGTGGGATCGGGTCGATCC-CTGGCTTGCGCATTATGCCTTTTCGGCCAG-C
63 CGGCAGCACGC-AAGGGGGATAGGGCCGATCCTC-GACTTGCGCATTATGCC-TCTCCGACAGAC
*
16272791 TCAGCACCCGCACGCTCGTTTCATGGGTTGACT
125 TCAGCACCCGCACGCCCGTTTCATGGGTTGACT
* *
16272824 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATT-GATCGGACCGAGGGTTGGGGCAGCAGGATCG
16272889 ACAGAACGTA
Statistics
Matches: 180, Mismatches: 35, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.03
158 55 0.31
159 107 0.59
160 12 0.07
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGATCGGACCGAGGGTTGGGGCAGCAGGATCGG
CAGCACGCAAGGGGGATAGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACAGACTCAGCA
CCCGCACGCCCGTTTCATGGGTTGACT
Found at i:16273022 original size:26 final size:26
Alignment explanation
Indices: 16272985--16273036 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272975 GTTGGCTTAG
16272985 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
* *
16273011 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16273037 CATCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16273296 original size:26 final size:26
Alignment explanation
Indices: 16273267--16273319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16273257 GTTGACTTAG
*
16273267 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16273293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16273319 G
1 G
16273320 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16273611 original size:159 final size:158
Alignment explanation
Indices: 16273444--16273796 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 158
16273434 TCATGTGTTG
* * * * * **
16273444 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-TCGGACCGAGTGTTGTGGCAGTGG
1 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * **
16273507 GACCGGTAGCACATCGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCTG
65 GACCGATAGCACATAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGACCAA
* *
16273572 CTTAACGCCTGAACGCTCATTTCGTGGGTT
129 CTGAACGCCCGAACGCTCATTTCGTGGGTT
* * **
16273602 GACTTAGGCATACAGAGTTCATTCCTTGTCTAAG-ATTGGACCAGACCGAGGGTTGCGGCAGCAG
1 G-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * *
16273666 GATCGATAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTCCGGCCAAC
65 GACCGATAGCACATAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGACCAAC
* * *
16273731 TGAACGCCCGCACGCTCGTTTTGTGGGTT
130 TGAACGCCCGAACGCTCATTTCGTGGGTT
*
16273760 GGTTGAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCTT-AGGCATACGGAGTTCATTCCATGTCTAAGCAT
16273797 ACGGAGTTCA
Statistics
Matches: 159, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 95 0.60
159 61 0.38
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGG
ACCGATAGCACATAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGACCAACT
GAACGCCCGAACGCTCATTTCGTGGGTT
Found at i:16273803 original size:26 final size:26
Alignment explanation
Indices: 16273767--16273845 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16273757 GTTGGTTGAG
16273767 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16273793 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16273819 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16273845 G
1 G
16273846 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16274670 original size:157 final size:154
Alignment explanation
Indices: 16274186--16274677 Score: 416
Period size: 159 Copynumber: 3.1 Consensus size: 154
16274176 CCCAGTCTAA
* * * * * *
16274186 GCATATGGAGTTCATTCCCAGTCTAAGAT-GGAATTGGATCGAGGGTTGCGACTGCAAGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAGGATCAG-A-TCGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
16274250 AGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCCCTTTGACCGGCTAAGCGC
64 AGCACG-AAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTC-TCG-CTGGCTAAGCGC
* * *
16274315 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CCACACGCTCGTTTCATGGGTTGGCTTAG
* *** * * * *
16274344 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGAACCGAGGCTTGTGGCAGCAGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCT-AGGATCAGATCG-ACCGAGGGTTGCGACAGCAGGATCGA
* * * * * *
16274407 CAGCACGCAAAGGGGGATTGGGCCAATCCCCGTCTTGCGCATTATGCCTCTTCGCTCGGCTCAGC
63 CAGCACG--AAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTC-TCGCT-GGCTAAGC
* * * * *
16274472 GCCCACATGCTTGTTTCATGGATTGACTTAT
124 GCCCACACGCTCGTTTCATGGGTTGGCTTAG
* *
16274503 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAGGATCAGATC-GACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
16274568 GCACGTAGGGGGACCAGACCGATCCCCGGCTTGTGCATTCTACCTCTCCAGCTGGCT-GGACGCC
65 GCACGAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCT-C-GCTGGCTAAG-CGCC
* *
16274632 CACGCGCTCGTTTCTTGGGTTGGCTTAG
127 CACACGCTCGTTTCATGGGTTGGCTTAG
16274660 GCATATGGAGTTCATTCC
1 GCATATGGAGTTCATTCC
16274678 ATGTCTAACC
Statistics
Matches: 259, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 83 0.32
158 54 0.21
159 116 0.45
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (154 bp):
GCATATGGAGTTCATTCCCAGTCTAGGATCAGATCGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCGCTGGCTAAGCGCCCACA
CGCTCGTTTCATGGGTTGGCTTAG
Found at i:16274697 original size:26 final size:26
Alignment explanation
Indices: 16274661--16274711 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16274651 TTGGCTTAGG
*
16274661 CATATGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
16274687 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16274712 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16283633 original size:26 final size:26
Alignment explanation
Indices: 16283597--16283646 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16283587 GGCTTAGGCG
*
16283597 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAATTCATTCCCA-GTCTAAGCA
16283623 TACGGAATTCATTCCCAGTCTAAG
1 TACGGAATTCATTCCCAGTCTAAG
16283647 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAATTCATTCCCAGTCTAAGCA
Found at i:16284364 original size:26 final size:26
Alignment explanation
Indices: 16284327--16284376 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16284317 GATGAGTTAG
* *
16284327 GCATACGGAGTTCATCCCCGGTCTCA
1 GCATACGAAGTTCATCCCCAGTCTCA
*
16284353 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
16284377 AAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTCA
Found at i:16284738 original size:159 final size:158
Alignment explanation
Indices: 16284353--16284852 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 158
16284343 CCCGGTCTCA
* * * * *
16284353 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGTTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAT
* * * ** * * * * * *
16284417 AGCATGTAGGGGGGATCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
65 AGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTAAGCGC
16284482 CCG--TACTCCCGTTTCATGGGTTGGCTTAG
130 CCGCATACT--CGTTTCATGGGTTGGCTTAG
* * *** * * * * *
16284511 GTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGTGTTGTGGCAGCGGGA-CCAG
1 GCATACGGAGTTCATTCCATGTCTAA-AATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGA-
* * * * *
16284574 CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGT
64 TAGCACGTAG-GGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTAAGC
* * *
16284639 GCCCGCATACTTGTTTCACGGGTTGACTTAG
128 GCCCGCATACTCGTTTCATGGGTTGGCTTAG
* *
16284670 GCATACGGAGTTCATTCTCAT-TCTAAAATCAGACCAGACCGAGGGTTACGACAGTAGGATCGAT
1 GCATACGGAGTTCATTC-CATGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * *
16284734 AGCACGTAGGGGGCACCGGG-TCGGTCCCCGGC-T-TGCACTTTTGCCCCTCCGATCGGCTAAGC
65 AGCACGTAGGGGGGACCGGGCT-GATCCCCGGCTTGTGCA-TTATGCCTCTCCGGTCGGCTAAGC
** * *
16284796 GCCCGCACGCTCGCTTCGTGGGTTGGCTTAG
128 GCCCGCATACTCGTTTCATGGGTTGGCTTAG
16284827 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16284853 GCATACGAAG
Statistics
Matches: 269, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 7 0.03
157 71 0.26
158 67 0.25
159 115 0.43
160 5 0.02
161 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGATA
GCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTAAGCGCC
CGCATACTCGTTTCATGGGTTGGCTTAG
Found at i:16284864 original size:26 final size:26
Alignment explanation
Indices: 16284827--16284879 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16284817 GTTGGCTTAG
*
16284827 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16284853 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16284879 G
1 G
16284880 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16285720 original size:26 final size:26
Alignment explanation
Indices: 16285668--16285720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16285658 GTTGGTTTAG
*
16285668 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16285694 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16285720 G
1 G
16285721 ATTGGGCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16286104 original size:840 final size:837
Alignment explanation
Indices: 16284451--16286595 Score: 2296
Period size: 840 Copynumber: 2.5 Consensus size: 837
16284441 TCCCCAGCTT
* * * * * *
16284451 GCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACTCCCGTTTCATGGGTTGGCTTAGGTATA
1 GCGCATTCTGCCTCTCC-GCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
** * *
16284516 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-CCGAGTGTTGTGGCAGCGGGACCAGCAGCAC
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCC-AGGGTTGTGGCAGCGGGACCGGCAGCAC
* *
16284580 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGC
129 GTAGA-GGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGC
* ** * * * *
16284645 ATACTTGTTTCACGGGTTGACTTAGGCATACGGAGTTCATT-CTCATTCTAAAATCAGACCAGAC
193 ATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAAGATCGGACC-GA-
** * * *
16284709 CGAGGGTTACGACAGTAGGATCGATAGCACGTAGGGGGCACCGGGTCGGTCCCCGGCTTGCACTT
255 CGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGA-CGGGTCGGT-CCCGGCTTGCA-TT
* * * * * *
16284774 TTGCCCCTCCGATCGGCTAAGCGCCCGCACGCTCGCTTCGTGGGTTGGCTTAGGCATACGGAGTT
317 CTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * * *
16284839 CATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGACCAAGGCTTGCGA
382 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGCTTACGA
* * * * **
16284904 CAGCAGGACCAGCAGTAGGATCGGCAGCATGCAGGGGGTGATCGGGCCGATCCTCGGCTTGCGCA
447 CAACAAGACCAACAGCAGGATCAACAGCATGCAGGGGGTGATCGGGCCGATCCTCGGCTTGCGCA
* * ** * * ** * * *
16284969 TTCTGTCTCTCCGGCCGACTGAGTGCCCGCATGCTTGTTTCGTTGGTTGGCTTAGTCATACAGAG
512 TTCTGCCTCTCCGACCGACTGAGCACCAGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG
* * *
16285034 TTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGTGGCATCGA
577 TTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGTTGTGGCAATAGGACCGGCAGCGGCATCGA
* * * *
16285099 CAGCACGCAGAGGGGGTCCAGGATGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGC
642 CAGCACGCAAAGGGGGTACAGGATGATCCTCGACTTACGCATTAAGCCTCTCCGACCGGCTGAAC
* ** * *
16285164 GCCTGCACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGTAGACAG
707 GCCCGCACGCTCATTTAGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAG
* * * * *
16285229 AGTTCATTCCAATTCTACGATCGGATCCGGACCGAGGGTTGCGACAGCAGGATCG-ATA-GCA-A
772 AGTTCACTCCAATTCTAAGATCAGATCCAGACCGAGGGTTGCGACAGCAGGATCGAACACGCAGA
16285291 -
837 C
*
16285291 GCGCATTCTGCCTCTCCAGCTGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
1 GCGCATTCTGCCTCTCC-GCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
16285356 GGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCCAGGGTTGTGGCAGCGGGACCGGCAGCACG
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCCAGGGTTGTGGCAGCGGGACCGGCAGCACG
* * * *
16285421 TAGTGGGGAACCGGGTTGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCA
130 TAGAGGGG-ACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCA
* *
16285486 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGACTGA
194 TGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAC-GA
* * * *
16285551 GGGTTGCGGTAGCAGGA-CTGATAGCATGCAGGGGGTGATCGGGTCGGTCATCGACTTACGCATT
258 GGGTTACGGTAGCAGGATC-GATAGCACGCAGGGGG-GA-CGGGTCGGTC-CCGGCTT--GCATT
* * * *
16285615 CTGCCTCTCCGATCGGTTGTGCACCTGCACGCTCGTTTCGTGAGTTGGTTTAGGCATACGGAGTT
317 CTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
16285680 CATTCCATGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGGCTAGATCGAGGGTTACGA
382 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGCTTACGA
* * **
16285745 CAACAAGACCAATAGCAGGATCAACAGCATGTAGGGGG-GATCGGGTTGATTCC-CGGCTTGCGC
447 CAACAAGACCAACAGCAGGATCAACAGCATGCAGGGGGTGATCGGGCCGA-TCCTCGGCTTGCGC
*
16285808 ATTCTGCCTCTCCGACCGACTGAGCACCAGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
511 ATTCTGCCTCTCCGACCGACTGAGCACCAGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
* * * ** *
16285873 GTTTATTCCATGTTTAAGCACCAGTCGAACCGAGGGTTGTGGCAATAGGATTGGCAGCGGGATCG
576 GTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGTTGTGGCAATAGGACCGGCAGCGGCATCG
* * * *
16285938 ACAGCACGCAAAGAGGGG-ACAGGGTTGATCC-CTGGCTTGCGCATTAAGCCTCTCCGATCGGCT
641 ACAGCACGCAAAG-GGGGTACA-GGATGATCCTC-GACTTACGCATTAAGCCTCTCCGACCGGCT
** * *
16286001 GAACGCCCGCACGCTCATTTCAG-GGGTTGACTTAGGCATATGGGGTTCATCCCCCATCTAAGCA
703 GAACGCCCGCACGCTCATTT-AGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
* * * * * *
16286065 TACGGTGTTCACTCTCAA-TCTAAGATCAGA-CCAGACCGAGGGTTGTGGCAGTAGGATCGACAA
767 GACAGAGTTCACTC-CAATTCTAAGATCAGATCCAGACCGAGGGTTGCGACAGCAGGATCG--AA
16286128 CACGCAGGGGGGACC
829 CACGCA-----GA-C
* * * *
16286143 GGGCCGATCCCCGGCTTATGCATTCTGCCTCTTTGGCCAACTGAGCGCCCGCACGCCCGTTTCGT
1 --G-CG-----C--ATTCTGC-CTCT-CCGC--TGG----CTGAGCGCCCGCACGCCCGTTTCGT
* * *
16286208 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTTTGGTA
48 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCCAGGGTTGTGGCA
* * * * *
16286273 GCAGGATCGGCAGCACGTAGAACGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCCG
113 GCGGGACCGGCAGCACGTAG-AGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGG
* * * * * *
16286337 ACAGGCTCA--GCACCTCAATGCTTGATTTCGTGGGTTGACTTAGGCATA-GAAGTTCATTCCCA
177 TC-GGCTCAGTGC-CCGC-ATGC-TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA
* ** * *
16286399 GTGTAAGATCGGATTGAAACGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGAAGGGGC
238 GTCTAAGATCGGACCG--ACGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGACGGGTC
* * * *
16286464 TGGTCCCGGCTTGTGCATTCTGCCTCTCCG-GCAGGCTGAGCCCCTGCACGTTCGTTTCATGGGT
301 -GGTCCCGGC-T-TGCATTCTGCCTCTCCGATC-GGCTGAGCACCTGCACGCTCGTTTCGTGGGT
* *
16286528 TGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGCATACGGAGTTCATTCCCAGTCTATGATCA
362 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTA
16286592 GACC
427 GACC
16286596 GAACTGAGGG
Statistics
Matches: 1081, Mismatches: 167, Indels: 87
0.81 0.13 0.07
Matches are distributed among these distances:
838 2 0.00
839 36 0.03
840 399 0.37
841 257 0.24
842 7 0.01
843 2 0.00
844 3 0.00
850 1 0.00
854 1 0.00
855 2 0.00
860 1 0.00
862 5 0.00
863 4 0.00
864 2 0.00
865 3 0.00
867 35 0.03
868 83 0.08
869 174 0.16
870 61 0.06
871 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (837 bp):
GCGCATTCTGCCTCTCCGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCCAGGGTTGTGGCAGCGGGACCGGCAGCACGT
AGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCATG
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGACGAGGG
TTACGGTAGCAGGATCGATAGCACGCAGGGGGGACGGGTCGGTCCCGGCTTGCATTCTGCCTCTC
CGATCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGCTTACGACAACAAGAC
CAACAGCAGGATCAACAGCATGCAGGGGGTGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTC
TCCGACCGACTGAGCACCAGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCA
TGTCTAAGCACCAGCCGAACCGAGGGTTGTGGCAATAGGACCGGCAGCGGCATCGACAGCACGCA
AAGGGGGTACAGGATGATCCTCGACTTACGCATTAAGCCTCTCCGACCGGCTGAACGCCCGCACG
CTCATTTAGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAGAGTTCACTC
CAATTCTAAGATCAGATCCAGACCGAGGGTTGCGACAGCAGGATCGAACACGCAGAC
Found at i:16286422 original size:159 final size:157
Alignment explanation
Indices: 16286259--16286553 Score: 353
Period size: 157 Copynumber: 1.9 Consensus size: 157
16286249 CCAGCTGGAT
** * * **
16286259 CGAGGGTTTTGGTAGCAGGATCGGCAGCACGTAGAACGGGACTGGGCTGATCCCCGGCTTGCGCA
1 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAG-ACGGGAAGGGGCTGAT-CCCGGCTTGCGCA
* *
16286324 TTATGCCTCTCCGACAGGCTCAGCACCT-CAATGCTT-GATTTCGTGGGTTGACTTAGGCATA-G
64 TTATGCCTCTCCGACAGGCTCAGCACCTGC-ACG-TTCG-TTTCATGGGTTGACTTAGGCATACG
16286386 AAGTTCATTCCCAGTGTAAGATCGGATTGAAA
126 AAGTTCATTCCCAGTGTAAGATCGGATTGAAA
* ** * *
16286418 CGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGAAGGGGCTGGTCCCGGCTTGTGCATT
1 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGACGGGAAGGGGCTGATCCCGGCTTGCGCATT
* * * * * *
16286483 CTGCCTCTCCGGCAGGCTGAGCCCCTGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTCCGACAGGCTCAGCACCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
16286548 CATTCC
131 CATTCC
16286554 ATGCTAAGCA
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
156 23 0.20
157 50 0.44
158 12 0.11
159 29 0.25
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (157 bp):
CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGACGGGAAGGGGCTGATCCCGGCTTGCGCATT
ATGCCTCTCCGACAGGCTCAGCACCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTGTAAGATCGGATTGAAA
Found at i:16286550 original size:157 final size:158
Alignment explanation
Indices: 16286117--16286562 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 158
16286107 TTGTGGCAGT
* * * **
16286117 AGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTTGGCCA
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGG-CA
* **
16286182 -ACTGAGCGCCC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
65 GGCTGAGC-CCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCCATGTCT
* * **
16286244 AAGCCCCAGCTGGATCGAGGGTTTTGGTAGC
128 AAGCCCCAGCTGAAACGAGGGTTACGGTAGC
* * ** * * * *
16286275 AGGATCGGCAGCACGTAGAACGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACA
1 AGGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCA
* * * * * *
16286340 GGCTCAGCACCT-CAATGCTT-GATTTCGTGGGTTGACTTAGGCATAGAAGTTCATTCCCA-GTG
65 GGCTGAGCCCCTGC-ACG-TTCG-TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCATGTC
** * *
16286402 TAAG-ATCGGATTGAAACGAGGGTTACGGTAGC
127 TAAGCCCCAG-CTGAAACGAGGGTTACGGTAGC
* ** *
16286434 AGGATCGATAGCACGCAGGGGGGAAGGGGCTGGT-CCCGGCTTGTGCATTCTGCCTCTCCGGCAG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCAG
*
16286498 GCTGAGCCCCTGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG-CTAA
66 GCTGAGCCCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCCATGTCTAA
16286561 GC
130 GC
16286563 ATACGGAGTT
Statistics
Matches: 227, Mismatches: 48, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
156 30 0.13
157 49 0.22
158 34 0.15
159 89 0.39
160 25 0.11
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCAG
GCTGAGCCCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCATGTCTAAG
CCCCAGCTGAAACGAGGGTTACGGTAGC
Found at i:16286762 original size:26 final size:26
Alignment explanation
Indices: 16286733--16286783 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16286723 TTGACTTAGG
*
16286733 ATACAAAGTTTATCCCCAGTCTAAGC
1 ATACAAAGTTCATCCCCAGTCTAAGC
** *
16286759 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATCCCCAGTCTAAG
16286784 ATCAGATCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAAGC
Found at i:16287305 original size:26 final size:26
Alignment explanation
Indices: 16287269--16287321 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16287259 GTTGGCTTAG
16287269 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16287295 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16287321 G
1 G
16287322 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16288349 original size:159 final size:159
Alignment explanation
Indices: 16288060--16288351 Score: 361
Period size: 159 Copynumber: 1.8 Consensus size: 159
16288050 TAGCACGTAG
* * * * * * * *
16288060 GGGGGATCAGGTTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACCCC
1 GGGGGATCAGGTCGATCCCCGACTTGCGCATTATACCTCTCCGATCAGCTCAACACCCGCACCCC
** ** * * * *
16288125 CATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
66 CATTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGACCAAGGG
16288190 TTGTGGCAACGGGACCGATAGCATGCAGA
131 TTGTGGCAACGGGACCGATAGCATGCAGA
* * * * *
16288219 GGGGGATCAGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGATTAGCTCAACACCCGCACGCT
1 GGGGGATCAGGTCGATCCCCGACTTGCGCATTATACCTCTCCGATCAGCTCAACACCCGCACCCC
* *
16288284 CATTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCGAACCAGACCAAGG
66 CATTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGACCCAACCAGACCAAGG
16288348 GTTG
130 GTTG
16288352 CGGTAGTAGG
Statistics
Matches: 109, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
158 1 0.01
159 108 0.99
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GGGGGATCAGGTCGATCCCCGACTTGCGCATTATACCTCTCCGATCAGCTCAACACCCGCACCCC
CATTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGACCAAGGG
TTGTGGCAACGGGACCGATAGCATGCAGA
Found at i:16289009 original size:26 final size:26
Alignment explanation
Indices: 16288980--16289032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16288970 GTTGGCTTAG
16288980 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
*
16289006 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
16289032 G
1 G
16289033 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:16289120 original size:518 final size:511
Alignment explanation
Indices: 16288074--16289520 Score: 1541
Period size: 518 Copynumber: 2.8 Consensus size: 511
16288064 GATCAGGTTG
* * * * * * *
16288074 ATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACCCCCATTTTGTGGGTTG
1 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCCCGTTTCGTGGGTTG
* *
16288139 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAACGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAAGGTTGTGGCAGCGGGA
** * * * * *
16288204 CCGATAGCATGCAGAGGGGGATCAGG-TCGATCCTCGACTTGCGCATTATGCCTCTCCGAT--TA
131 CCGATAGCACACAGAGGAGGATCGGGCT-GATCCCCGGCTTACGCATTATGCCTCT-C-ATGCTA
* * * * *
16288266 GCTCAACACCCGCACGCTCATTTTGTGGGTTAACTTAGGCATACAGAGTTCATTCCTAGTCTAAG
193 GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA-AGTTCATTCC-AGTCTAAG
* * * * * ** *
16288331 ATCGAACCAGACCAAGGGTTGCGGTAGTAGGATCGACGGCACACAGGGGGGATTGGGCTAGTCCC
256 ATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCGAGTCCC
* *
16288396 CGACTTGAGCATTCTGCCTTTCCAACCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
321 CGACTTGAGCATTCTACCTTTCCAACCGACTAACCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * * ** *
16288461 GGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTACGATTGGACTGGA
386 GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * ** * *
16288526 CCGAGGGTTGTGGCAGCAGAACCAGTAGTAGGATCGGTATCACGTAGGAGGGACCGAGCCA
451 CCGAGGGTTGCGGCAGCAGAACCAGCAACAGGATCGGTAGCACGCAGGAGGGACCGAGCCA
* * * *
16288587 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCCACACGCCCGTTTCGTGGGATG
1 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCCCGTTTCGTGGGTTG
* * * *
16288652 GCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGTGGTAGCGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAAGGTTGTGGCAGCGGGA
* * * *
16288717 CCGACAGCACACAGAGGAGGACCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCATGCTGGCT
131 CCGATAGCACACAGAGGAGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCATGCTAGCT
* * *
16288782 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTACGCATACGAAGTTAATTTCCAGTCTAAGATC
196 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCA-TTCCAGTCTAAGATC
* * *
16288847 GGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGTGGGGGACCGGGCCGA-TCCCC
259 GGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAG-GGGGGACCGGG-CGAGTCCCC
* * * ** *
16288911 GACTTGCA-CATTTTACCTCTTCGGTCAGCTGAGC-GCCCGCCCGCATGCTCGTTTCGTGGGTTG
322 GACTTG-AGCATTCTACCT-TTC---CAACCGA-CTAACCGCCCGCACGCTCGTTTCGTGGGTTG
*
16288974 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAGA
381 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
16289039 CCGGACCGAGGTTTGCGGCAGCAGGACCAGCAACAGGATCGGTAGCACGCA-GAGGGGACCGGGC
446 CCGGACCGAGGGTTGCGGCAGCAGAACCAGCAACAGGATCGGTAGCACGCAGGA-GGGACCGAGC
*
16289103 CG
510 CA
* * * *
16289105 ATCCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCACCCACACGCCTGTTTCGTGGGTTG
1 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCCCGTTTCGTGGGTTG
* ** * *
16289170 GCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTCGGATTG-AGGATTGTAGCAGCGGG
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAAGG-TTGTGGCAGCGGG
* * * ** * * *
16289234 ACTGTTAGCACACAGA-GAGGGATCGAGCCAATCCCTGGTTTACGCATTATGCCTCTC-TGGCCA
130 ACCGATAGCACACAGAGGA-GGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCAT-GCTA
** * * * *
16289297 GCTCAGCGCCTACACACTAGTTTCGTGGGTTGACTTAGGCATACAAAATTCATTCTTAGTCTAAG
193 GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCATTC-CAGTCTAAG
* * ** * *
16289362 ATCAGACTGGATGGAGGGTTGCAGCAGTAGGATCGACAGCACACAGGGGGGACCGGGTTGA-TCC
256 ATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGGGGGGACCGGG-CGAGTCC
** * * * * * * * ** * * * *
16289426 TTGGCTT-ACGCATTCTGCCATTCTAGCCGGCTGAGTGGCCGCACGCTCATTTCATGTGTTGGCT
320 CCGACTTGA-GCATTCTACCTTTCCAACCGACTAACCGCCCGCACGCTCGTTTCGTGGGTTGGCT
**
16289490 TAGGCATATGGAGTTCATTCCATGTCTAAGC
384 TAGGCATACAGAGTTCATTCCATGTCTAAGC
16289521 CCCAGCTGGA
Statistics
Matches: 775, Mismatches: 138, Indels: 42
0.81 0.14 0.04
Matches are distributed among these distances:
511 2 0.00
512 2 0.00
513 304 0.39
514 34 0.04
515 7 0.01
516 3 0.00
517 38 0.05
518 384 0.50
519 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (511 bp):
ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAAGGTTGTGGCAGCGGGA
CCGATAGCACACAGAGGAGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCATGCTAGCT
CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAGTTCATTCCAGTCTAAGATCGG
ACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCGAGTCCCCGACT
TGAGCATTCTACCTTTCCAACCGACTAACCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGCAGCAGAACCAGCAACAGGATCGGTAGCACGCAGGAGGGACCGAGCCA
Found at i:16289904 original size:672 final size:680
Alignment explanation
Indices: 16288948--16290192 Score: 1555
Period size: 672 Copynumber: 1.8 Consensus size: 680
16288938 GCTGAGCGCC
* * * * *
16288948 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTAGCTCAGGCACACAGAGTTCATTCCATGTCTAAGCATACG
* * * *
16289013 GAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGTTTGCGGCAGCAGGACCAGCAACAGGAT
66 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCAG-AACAGCAT
* * * * * *
16289078 CGGTAGCACGCAGAGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGA
130 CGG-AGCA--CAGAGGGGACCAGGCCGATCCCTAGCTTGCGAAATCTGCCTCTCCGATCGGCTGA
*
16289143 GCACCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCA
192 GCACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCA
* * * * * **
16289208 GTCGGATTGAGGATTGTAGCAGCGGGACTGTTAGCACACAG-AGAGGGATCGAGCCAATCCCTGG
257 GCCGGACTGAGGATTGTAGCAGCGGGACCGGTAGCACACAGAAGA-GGACCGAGCCAATCCCCAG
* *
16289272 TTTACGCATTATGCCTC-TCTGGCCAGCTCAGCGCCTACACACTAGTTTCGTGGGTTGACTTAGG
321 CTTACGCATTATGCCTCTTC-GACCAGCTCAGCGCCTACACACTAGTTTCGTGGGTTGACTTAGG
* * ** ** *
16289336 CATACAAAATTCATTCTTAGTCTAAGATCAGA-CTGGATGGAGGGTTGCAGCAGTAGGATCGACA
385 CAAACAAAACTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCAGCAGCAGGATCGACA
* ** ** * *
16289400 GCACACAGGGGGGACCGGGTTGATCCTTGGCTTACGCATTCTGCCA-TTCTAGCCGGCTGAGTGG
449 GCACACAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCACTTC-AGCCGGCTGAGCGG
*
16289464 CCGCACGCTCATTTCAT-GTGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCT
513 CCGCACGCTCATTTCATAG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT
16289528 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTG
577 GGACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTG
16289593 ATCCTCGACTTCCGCGTTACACCTTTTCGACCGGCTGAG
642 ATCCTCGACTTCCGCGTTACACCTTTTCGACCGGCTGAG
* *
16289632 CGCCCGCACGCTCGTTTCATGGGTTAGCTCAGGCACACGGAGTTCATTCCATGTTTAAGCATACG
1 CGCCCGCACGCTCGTTTCATGGGTTAGCTCAGGCACACAGAGTTCATTCCATGTCTAAGCATACG
* * * ** *
16289697 AAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGA-TTG-GCAGCA-C
66 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCAGAACAGCATC
* * * * *
16289759 -G-G-A-AG-GGGGACCAGGCCGATCCTTGGCTTGCGAAATCTGCTTCTCCGATCGGCTGATCGC
131 GGAGCACAGAGGGGACCAGGCCGATCCCTAGCTTGCGAAATCTGCCTCTCCGATCGGCTGAGCAC
**
16289819 CCGTACGCCTGTTTCATGGGTTGGCTTAGGCATAAGG-AGTTCATTCCATGTCTAAGCCCCAGCC
196 CCACACGCCTGTTTCATGGGTTGGCTTAGGCAT-AGGTAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
16289883 GGACTGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAAGAGGACCGGGCTAATCCCCAGCTTG
260 GGACTGAGGATTGTAGCAGCGGGACCGGTAGCACACAGAAGAGGACCGAGCCAATCCCCAGCTTA
** * * * * * *
16289948 CGCATTATGCCTCTTCGACTGGCTCAGGGCCTGCACGCTCGTTTCGTGGGTTGATTTATGCAAAC
325 CGCATTATGCCTCTTCGACCAGCTCAGCGCCTACACACTAGTTTCGTGGGTTGACTTAGGCAAAC
* * * ** * * *
16290013 GAAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCATAC
390 AAAACTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACAC
* * * * *
16290078 AGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCACTTCGGCTGGCTGAGCGTCCGTACG
455 AGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCACTTCAGCCGGCTGAGCGGCCGCACG
*
16290143 CTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
520 CTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16290193 ATACGGAGTT
Statistics
Matches: 472, Mismatches: 83, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
672 344 0.73
673 15 0.03
676 1 0.00
677 1 0.00
679 1 0.00
680 1 0.00
681 4 0.01
683 1 0.00
684 104 0.22
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (680 bp):
CGCCCGCACGCTCGTTTCATGGGTTAGCTCAGGCACACAGAGTTCATTCCATGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGACCAGAACAGCATC
GGAGCACAGAGGGGACCAGGCCGATCCCTAGCTTGCGAAATCTGCCTCTCCGATCGGCTGAGCAC
CCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCCG
GACTGAGGATTGTAGCAGCGGGACCGGTAGCACACAGAAGAGGACCGAGCCAATCCCCAGCTTAC
GCATTATGCCTCTTCGACCAGCTCAGCGCCTACACACTAGTTTCGTGGGTTGACTTAGGCAAACA
AAACTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACACA
GGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCACTTCAGCCGGCTGAGCGGCCGCACGC
TCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGG
GTTGTGGCAGCAAGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTGATCCTCGAC
TTCCGCGTTACACCTTTTCGACCGGCTGAG
Found at i:16290158 original size:158 final size:158
Alignment explanation
Indices: 16289685--16290191 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 158
16289675 TCATTCCATG
* * *
16289685 TTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGAT
1 TTTAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
* * * ** * * * * * *
16289750 TGGCAGCACGGAAGGGGGACC-AGGCCGATCCTTGGCTTGCGAAATCTGCTTC-TCCGATCGGCT
66 TGGTAGCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCT-GGCT
* *
16289813 GATCGCCCGTACGC-CTGTTTCATGGGTTGG
129 GAGCGCCCGTACGCTC-GTTTCATGGGTTGA
* * * * ** * * *
16289843 CTTAGGCATAA-GGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAGCGG
1 TTTAAGCA-AACGAAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCAG
** * * * ** * *
16289905 GACCGGTAGCACGCAGAAGAGGACCGGGCTAATCCCC-AGCTTGCGCATTATGCCTCTTCGACTG
63 GATTGGTAGCACGCAG-GGGGGACCGAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGGCTG
* * * * *
16289969 GCTCAGGGCCTGCACGCTCGTTTCGTGGGTTGA
126 GCTGAGCGCCCGTACGCTCGTTTCATGGGTTGA
* *
16290002 TTTATGCAAACGAAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
1 TTTAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
* ** *
16290067 TGATAGCATACAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCACTTCGGCTGGCTGA
66 TGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGA
* * *
16290132 GCGTCCGTACGCTCGTTTCATAGGTTGG
131 GCGCCCGTACGCTCGTTTCATGGGTTGA
* * * *
16290160 CTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 TTTAAGCAAACGAAGTTCATTCCCA-GTCTAAG
16290192 CATACGGAGT
Statistics
Matches: 261, Mismatches: 75, Indels: 26
0.72 0.21 0.07
Matches are distributed among these distances:
157 8 0.03
158 139 0.53
159 105 0.40
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
TTTAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
TGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGA
GCGCCCGTACGCTCGTTTCATGGGTTGA
Found at i:16290195 original size:26 final size:26
Alignment explanation
Indices: 16290165--16290217 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16290155 GTTGGCTTAG
16290165 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16290191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16290217 G
1 G
16290218 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16290937 original size:26 final size:26
Alignment explanation
Indices: 16290900--16290949 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16290890 GACTTAGGCA
*
16290900 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGATCATCCCCAGTCTAAGCT
* *
16290926 TACGGAGATCATTCCTAGTCTAAG
1 TACGGAGATCATCCCCAGTCTAAG
16290950 ATCTGACTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGATCATCCCCAGTCTAAGCT
Found at i:16291598 original size:26 final size:26
Alignment explanation
Indices: 16291569--16291621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291559 GTTGGCTTAG
*
16291569 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
16291595 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16291621 G
1 G
16291622 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:16291876 original size:126 final size:125
Alignment explanation
Indices: 16291652--16291882 Score: 327
Period size: 126 Copynumber: 1.8 Consensus size: 125
16291642 GCGACAGCAG
* *
16291652 GATCGACAGCATGCAGGGGGACTGAACCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGATT
1 GATCGACAGCATGCAGGGGGACCGAACCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCGATT
*
16291717 GAGTGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGCAGCAGGACCAGTAGTAT
66 GAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGCAGCAGGACCAGTAGTAT
* * * * * *
16291777 GATCGATAGCATGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGTCTCTCTGGTCGGT
1 GATCGACAGCATGCA-GGGGGACCGAACCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCGAT
* * ** *
16291842 TGAGCGGCCGCACGTGCATTTCGTGGGTTGGCTTAGGCATA
65 TGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATA
16291883 CGGAGTTCAT
Statistics
Matches: 91, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
125 14 0.15
126 77 0.85
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (125 bp):
GATCGACAGCATGCAGGGGGACCGAACCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCGATT
GAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGCAGCAGGACCAGTAGTAT
Found at i:16291956 original size:26 final size:26
Alignment explanation
Indices: 16291878--16291947 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
16291868 GTTGGCTTAG
16291878 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16291904 GCATACTGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16291930 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16291948 CAGTGTAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16292662 original size:26 final size:26
Alignment explanation
Indices: 16292626--16292678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16292616 GTTGACTTAG
16292626 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16292652 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16292678 G
1 G
16292679 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16293005 original size:159 final size:157
Alignment explanation
Indices: 16292652--16293068 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 157
16292642 CCCAGTCTAA
* * * * * *
16292652 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCAAGGGTTGCGGCAGTAGGATTGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
16292717 GCATGCAAGGAGGATCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTAGGCTAAGCGCC
66 GCA-GCAAGGAGGATCGAGCCGATCCCTAGCTTGCACACTATGCCTCTCCGGTAGGCTAAGCACC
* * * *
16292782 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CACACGCCCATTTCATGGGTTGACTTAG
* ** * *
16292810 GCATAGAGAGTTCATTCC-ATGTCTAAGCCCCA-ACCGAACCGAGGGTTATGGCAGCAGGATCGG
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGA
* * * * *
16292873 CAGCA-CATAGAGAGGGA-CTGAGCCGATCCCTGGCTTGCACACTATGCCTGTCCGTTCGGCTCA
64 CAGCAGCA-AG-GA-GGATC-GAGCCGATCCCTAGCTTGCACACTATGCCTCTCCGGTAGGCTAA
* * *
16292936 GCACCCATAGGCTCATTTCATGGGTTGACTTAG
125 GCACCCACACGCCCATTTCATGGGTTGACTTAG
* * * * *
16292969 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGTAGGATTGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
16293034 GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGC
66 GCA-GCAAGGAGGATCGAGCCGATCCCTAGCTTGC
16293069 GCATTCTGTT
Statistics
Matches: 205, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 3 0.01
158 76 0.37
159 121 0.59
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGACA
GCAGCAAGGAGGATCGAGCCGATCCCTAGCTTGCACACTATGCCTCTCCGGTAGGCTAAGCACCC
ACACGCCCATTTCATGGGTTGACTTAG
Found at i:16293549 original size:26 final size:26
Alignment explanation
Indices: 16293499--16293551 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16293489 GTTGACTTAG
*
16293499 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
16293525 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
16293551 G
1 G
16293552 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:16293921 original size:159 final size:159
Alignment explanation
Indices: 16293665--16294029 Score: 344
Period size: 159 Copynumber: 2.3 Consensus size: 159
16293655 CGCACGCCCG
* ** *
16293665 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCAGAACCAAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTCCACCAGAACCAAGGG
* * * * ** *** * ** *
16293728 TTATGGTAGCAAGACCGGCAGCACGCAGAGGGGGACCGGGTTGATCCTCGGTTTTC-ATATTATG
65 TTACGGCAGCAAGACCGACAGCACACAGAGGGGGACCAAGCCAATCCCCGACTTACGA-ATTATG
* *
16293792 CCTCTTCGATCGGCTCAATGCCCACACACTCA
129 CCTC-TCGACCGACTCAATGCCCACACACTCA
* ** *
16293824 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCCACCAGAACCAAGGGT
* * * * *
16293888 TACGGCAGCAGGATCGACAGTACACAGTA-GGGGATCAAGCCAATCCCCGACTTACGAATTCTGC
66 TACGGCAGCAAGACCGACAGCACACAG-AGGGGGACCAAGCCAATCCCCGACTTACGAATTATGC
* * * * *
16293952 CTCTCGACCGACTGAGTGCCCGCACGCTCG
130 CTCTCGACCGACTCAATGCCCACACACTCA
**
16293982 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
16294030 TTGAGCCACG
Statistics
Matches: 166, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 65 0.39
159 92 0.55
160 9 0.05
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCCACCAGAACCAAGGGT
TACGGCAGCAAGACCGACAGCACACAGAGGGGGACCAAGCCAATCCCCGACTTACGAATTATGCC
TCTCGACCGACTCAATGCCCACACACTCA
Found at i:16294113 original size:11 final size:11
Alignment explanation
Indices: 16294097--16294128 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
16294087 CTTGGGGCAC
16294097 CATCGTCGGAG
1 CATCGTCGGAG
16294108 CATCGTCGGAG
1 CATCGTCGGAG
*
16294119 CATCATCGGA
1 CATCGTCGGA
16294129 AAGCATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16294737 original size:26 final size:26
Alignment explanation
Indices: 16294708--16294760 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16294698 GTTGACTTAG
*
16294708 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
16294734 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16294760 G
1 G
16294761 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16295220 original size:26 final size:26
Alignment explanation
Indices: 16295190--16295249 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
16295180 GTTGGCTTAG
**
16295190 GCATACGGATTTCATTCC-ATGTCTAA
1 GCATACGGACCTCATTCCTA-GTCTAA
16295216 GCATACGGACCTCATTCCTAGTCTAA
1 GCATACGGACCTCATTCCTAGTCTAA
16295242 G-AT-CGGAC
1 GCATACGGAC
16295250 TGGACCAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 23 0.74
27 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGACCTCATTCCTAGTCTAA
Found at i:16295607 original size:27 final size:27
Alignment explanation
Indices: 16295556--16295610 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
16295546 GTTGACTGAG
*
16295556 GCATACGGAGTTCATCCCTCTGTCTAA
1 GCATACGGAGTTCATCCCTCAGTCTAA
*
16295583 GCATACCGGAGTTCATTCC-CAGTCTAA
1 GCATA-CGGAGTTCATCCCTCAGTCTAA
16295610 G
1 G
16295611 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCTCAGTCTAA
Done.