Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 108 of 138
Found at i:16296278 original size:300 final size:300
Alignment explanation
Indices: 16295729--16296310 Score: 774
Period size: 300 Copynumber: 1.9 Consensus size: 300
16295719 GCCCATTTCG
*
16295729 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTATGGC
* * * * * * *
16295794 AGCGGGATCGGCAGCAGGTAGAGGGGGATCGGGCTGATCCTTAGCTTGCGCATTATGCCTCTCTG
66 AGCGAGACCGGCAGCACGCAGAGGGGGACCGAGCTGATCCTTAGCTTACGCATTATGCCTCTCTG
* * ** * *
16295859 GCAGCCTCAATGCTCATACGCTCATTTCGTGGGTTGACTAAGGCATACGGAGTTCGTTCCCATTC
131 GCAGCCTCAACGCTCATACGCTCATTTCATGGGTTGACTAACACATACGGAGTTCATTCCCAGTC
* ** * * * *
16295924 TAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGA
196 TAAGATCAGACCAGACCCAGGGTTGCAGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGA
16295989 TCCCC-GCTTATGCATTATGCCTCTCCGGATGCCCGTTTAA
261 TCCCCAGCTTATG-ATTATGCCTCTCCGGATGCCCGTTTAA
* * *
16296029 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGAGGGTTATGGT
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTATGGC
* * * * *
16296094 AGCGAGACCGGTAGCACGCAGAGGGGGACCGAGCTTATCTTTGGCTTACGCATTATGCCT-TTTC
66 AGCGAGACCGGCAGCACGCAGAGGGGGACCGAGCTGATCCTTAGCTTACGCATTATGCCTCTCT-
* * * * * * *
16296158 GGCTGGCTCAACGC-CCTTCGCTCGTTTCATGGGTTGACTTACACATACGGAGTTCATTCCTAGT
130 GGCAGCCTCAACGCTCATACGCTCATTTCATGGGTTGACTAACACATACGGAGTTCATTCCCAGT
*
16296222 CTAAGATCAGACCGGACCCAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCC
195 CTAAGATCAGACCAGACCCAGGGTTGCAGCAGCAGGATCGACAGCACG-AAGGGGGGACCGGGCC
*
16296287 GATCCCCAGCTTGTGATTATGCCT
259 GATCCCCAGCTTATGATTATGCCT
16296311 ATCCAGCTGG
Statistics
Matches: 241, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
299 85 0.35
300 150 0.62
301 6 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (300 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTATGGC
AGCGAGACCGGCAGCACGCAGAGGGGGACCGAGCTGATCCTTAGCTTACGCATTATGCCTCTCTG
GCAGCCTCAACGCTCATACGCTCATTTCATGGGTTGACTAACACATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGACCCAGGGTTGCAGCAGCAGGATCGACAGCACGAAGGGGGGACCGGGCCGA
TCCCCAGCTTATGATTATGCCTCTCCGGATGCCCGTTTAA
Found at i:16296387 original size:26 final size:26
Alignment explanation
Indices: 16296358--16296410 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16296348 GTTGGCTTAG
16296358 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAGAA-TTCATTCCCA-GTCTAA
16296384 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
16296410 G
1 G
16296411 ATCGGTCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:16297007 original size:343 final size:340
Alignment explanation
Indices: 16296274--16297775 Score: 1121
Period size: 343 Copynumber: 4.4 Consensus size: 340
16296264 AGCACGCAAG
* * * * * * * *
16296274 GGGGGACCGGGCCGATCCCCAGCTTGTG-ATTATGCCTATCCAGCTGGTTGAGCACCCGTACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CGGCCGGCTGAGCGCCCGCACGCT
* * * * *
16296338 CGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCC-ATGTCTAAGCATACAGAATTCATTC
65 CATTTTGTGGGTTGACTTAGGCATACAG-AGTTCATTCCTA-GTCTAAGCATACGGAGTTCATTC
* * * ** *
16296401 CCAGTCTAAGATCGGTCTAGACCGAGGGTTGCGGTAGGAGGA-CAAGCAGCAAGATCTACAGCAC
128 CCAGTCTAAGATCGGAC-GGATCGAGGGTTATGGTAGCAGGATC--G-A-C-AG--C-AC-G--C
* * ** * * * *
16296465 AGAGGAGGGACCGGGCCAATCGTCGGCTT-ACGCATTCTGCCTCTTCGATG--GGCTGAGCACCT
181 AG-GG-GGGA-CTGG-CGATCCCCGGCTTGA-GCATTCTGCCT-TTCCA-GCCGACTGAGCGCCC
* * * * * * * *
16296527 GTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCGTTCCATGTCCAAGCCCCAGTCGGA
239 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
** * * * * * *
16296592 CTGAGGGTTGTGGCAGCGGGATCGGTAGCACGCA-AC
304 CCAAGGGTTGTGGCAGCAGGACCAGCATCAAGCAGAC
* * * * * *
16296628 GGGGGATCAGGCCGATCCCTGACTTGCACATTATGCCTCTCAGGCCGGCTGAGCGCCCGCATGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTC-GGCCGGCTGAGCGCCCGCACGCT
*
16296693 CGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGT-TGAAGCATACGGAGTTCATTCC
65 CATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCT-AAGCATACGGAGTTCATTCC
* * * *
16296757 CAGTCTAGGATCGGATCGGATCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGGGATCGG
129 CAGTCTAAGATCGGA-CGGATCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGA-CTG
* * *
16296822 GTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGCCGACTGAGTGCCCGCACGCCCGTTTTGTGG
192 G-CGATCCCCGGCTTGAGCATTCTGCCTTTCCAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGG
* * * **
16296887 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGTGTTGTGGCAAT
256 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGC
*
16296952 GGGACCAGCATCAAGCAGA-
321 AGGACCAGCATCAAGCAGAC
* * *
16296971 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCGGCCGGCTGAGCGCCCGCACGCT
* *
16297036 CATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG---------
65 CATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
16297088 A-TC---GA----AC----CGAGGGTTACGGTAACAGGATCGACACCGCGCAGGGGGGGATCAGG
130 AGTCTAAGATCGGACGGATCGAGGGTTATGGTAGCAGGATCGACAGCACGCA-GGGGGGA-CTGG
* * * * * * *
16297141 TCGATCCCTGGCTTGAGCATTCTGCCTCTTCGA-TCGACTGAGCACCCGCAAGCTCATTTCGTGG
193 -CGATCCCCGGCTTGAGCATTCTGCCT-TTCCAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGG
*
16297205 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCCAGACCAAGGGTTGTGGCAGC
256 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGC
* * *
16297270 AGGACCA-CCTACAGGTAGA-
321 AGGACCAGCAT-CAAGCAGAC
* * * * * * *
16297289 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCAGGCTTAACGCCCGCGCACT
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTC-GGCCGGCTGAGCGCCCGCACGCT
** * * * * * *
16297354 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATGCATTCTC
65 CATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
* *
16297419 AGTCTAAGATCTGACCGGATCGAGGGTTATGGTAGAAGGATCGACAGCACGCAGGGGGGACTTGG
130 AGTCTAAGATCGGA-CGGATCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGAC-TGG
* * * * * * *
16297484 CCGATCCTCGGCTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACCCCCGTTTCGTGGG
193 -CGATCCCCGGCTTGAGCATTCTGCCTTTCCAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
* * ** * * * *
16297549 TTGGCTTAAGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCATATCAAGGGTTGCGGTAG
257 TTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAG
* * * *
16297612 CAGGATC-G-A-CAACTCGGAG
320 CAGGACCAGCATCAA-GCAGAC
* * * * * * * **
16297631 GGGGGACCGGGTCGTTCCCCGGCTTACGTATTCTACCTATCCGGCTAGCTGAGCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CGGCCGGCTGAGCGCCCGCACGCT
* * *
16297696 TATTTTGTGGGTTGGCTTAGGCATACAGAGTTCTTTCC-ATGTCTAAGCATACGGAGTTCATTCC
65 CATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTA-GTCTAAGCATACGGAGTTCATTCC
*
16297760 CAATCTAAGATCGGAC
129 CAGTCTAAGATCGGAC
16297776 CAAACCGAAG
Statistics
Matches: 926, Mismatches: 170, Indels: 117
0.76 0.14 0.10
Matches are distributed among these distances:
317 31 0.03
318 226 0.24
319 6 0.01
320 1 0.00
321 1 0.00
322 2 0.00
326 2 0.00
329 2 0.00
330 1 0.00
331 1 0.00
332 2 0.00
335 2 0.00
339 3 0.00
340 3 0.00
341 6 0.01
342 128 0.14
343 323 0.35
344 34 0.04
345 2 0.00
347 1 0.00
348 2 0.00
349 1 0.00
351 2 0.00
352 1 0.00
353 1 0.00
354 24 0.03
355 114 0.12
356 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (340 bp):
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCGGCCGGCTGAGCGCCCGCACGCTC
ATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACGGATCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGCGA
TCCCCGGCTTGAGCATTCTGCCTTTCCAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGAC
CAGCATCAAGCAGAC
Found at i:16297030 original size:159 final size:158
Alignment explanation
Indices: 16296812--16297401 Score: 537
Period size: 159 Copynumber: 3.7 Consensus size: 158
16296802 CAGCACGTAG
* * * * **
16296812 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCCAGCCGACTGAGTGCCCGCACGC
1 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-CGGTCGACTGAGCACCCGCACGC
* * * * * *
16296876 CCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGT
65 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCAAGG
**
16296941 GTTGTGGCAATGGGACCAGCATCAAGCAGA
129 GTTGTGGCAACAGGACCAGCATCAAGCAGA
* * *
16296971 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCT
1 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTGAGCACCCGCACGCT
* * ** * * *
16297036 CATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCGAACCGAGG
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAG-CCGGACCAAGG
** * * * ** *
16297100 GTTACGGTAACAGGATC-GACACCGCGCAGG
129 GTTGTGGCAACAGGACCAG-CATCAAGCAGA
* * * * * * *
16297130 GGGGGATCAGGTCGATCCCTGGCTTGAGCATTCTGCCTCTTCGATCGACTGAGCACCCGCAAGCT
1 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTGAGCACCCGCACGCT
* * * *
16297195 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCCAGACCAAGGG
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCAAGGG
* * * *
16297260 TTGTGGCAGCAGGACCA-CCTACAGGTAGA
130 TTGTGGCAACAGGACCAGCAT-CAAGCAGA
* * * * * * *
16297289 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTC-TCTGG-CAGGCTTAACGCCCGCGCA
1 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGTC-GACTGAGCACCCGCACG
**
16297352 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGC
64 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
16297402 ATACGGAATG
Statistics
Matches: 341, Mismatches: 79, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
158 9 0.03
159 323 0.95
160 9 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTGAGCACCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCAAGGGT
TGTGGCAACAGGACCAGCATCAAGCAGA
Found at i:16297315 original size:318 final size:317
Alignment explanation
Indices: 16296739--16297400 Score: 864
Period size: 318 Copynumber: 2.1 Consensus size: 317
16296729 CCTAGTTGAA
* * * * ** *
16296739 GCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGTAACAGGATCGACA
* * * * **
16296804 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGCCGACTGAGTGCC
66 CCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGAGCATTCTGCCTTTCCAGCCGACTGAGCACC
* * * * *
16296869 CGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
131 CGCAAGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* ** *
16296934 ACCAAGTGTTGTGGCAATGGGACCAGCATCAAGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
196 ACCAAGGGTTGTGGCAACAGGACCACCATCAAGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
* * * *
16296999 CATTATGCCTCT-TCGGTC-GGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAT
261 CATTATGCCTCTCT-GG-CAGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAG
*
16297056 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTACGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGTAACAGGATCGACA
* * * *
16297121 CCGCGCAGGGGGGGATCAGGTCGATCCCTGGCTTGAGCATTCTGCCTCTTCGA-TCGACTGAGCA
66 CCACGCA-GGGGGGATCAGGTCGATCCCCGGCTTGAGCATTCTGCCT-TTCCAGCCGACTGAGCA
* *
16297185 CCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAGCC
129 CCCGCAAGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * *
16297250 AGACCAAGGGTTGTGGCAGCAGGACCACC-TACAGGTAGAGGGGGATCGGGCCGATCCCTGGCTT
194 AGACCAAGGGTTGTGGCAACAGGACCACCAT-CAAGCAGAGGGGGACCGGGCCGATCCCCGGCTT
* * * **
16297314 GCGCATTATGCCTCTCTGGCAGGCTTAACGCCCGCGCACTTGTTTCGTGGGTTGACTTAG
258 GCGCATTATGCCTCTCTGGCAGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAG
16297374 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
16297401 CATACGGAAT
Statistics
Matches: 296, Mismatches: 44, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
317 63 0.21
318 228 0.77
319 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGTAACAGGATCGACA
CCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGAGCATTCTGCCTTTCCAGCCGACTGAGCACC
CGCAAGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGTTGTGGCAACAGGACCACCATCAAGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
CATTATGCCTCTCTGGCAGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAG
Found at i:16297415 original size:26 final size:26
Alignment explanation
Indices: 16297374--16297426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16297364 GTTGACTTAG
* *
16297374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATGCATTCCCAGTCTAA
*
16297400 GCATACGGAATGCATTCTCAGTCTAA
1 GCATACGGAATGCATTCCCAGTCTAA
16297426 G
1 G
16297427 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATGCATTCCCAGTCTAA
Found at i:16297636 original size:158 final size:158
Alignment explanation
Indices: 16297397--16297742 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 158
16297387 ATTCCCAGTC
* * * * * *
16297397 TAAGCATACGGAATGCATT-CTCAGTCTAAGATCTGACCGGATCGAGGGTTATGGTAGAAGGATC
1 TAAGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCAGATCAAGGGTTACGGTAGAAGGATC
* ** * ** * *
16297461 GACAGCACGCAGGGGGGACTTGGCCGATCCTCGGCTTGTGCATTCTACCTCTCCGGCCGGCTGAG
65 GACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTATCCGGCCAGCTGAG
*
16297526 CGCCCGCACCCCCGTTTCGTGGGTTGGCT
130 CGCCCGCACCCCCATTTCGTGGGTTGGCT
* * *
16297555 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCATATCAAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCAAGGGTTACGGTAGAAGGATCG
* * * * * *
16297620 ACAACTCGGAGGGGGGACCGGGTCGTTCCCCGGCTTACGTATTCTACCTATCCGGCTAGCTGAGC
66 ACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTATCCGGCCAGCTGAGC
* ** *
16297685 GCCCGCACGCTTATTTTGTGGGTTGGCT
131 GCCCGCACCCCCATTTCGTGGGTTGGCT
* * *
16297713 TAGGCATACAGAGTTCTTTCC-ATGTCTAAG
1 TAAGCATACGGAGTTCATTCCTA-GTCTAAG
16297743 CATACGGAGT
Statistics
Matches: 155, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 152 0.98
159 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCAAGGGTTACGGTAGAAGGATCG
ACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTATCCGGCCAGCTGAGC
GCCCGCACCCCCATTTCGTGGGTTGGCT
Found at i:16298091 original size:26 final size:26
Alignment explanation
Indices: 16298062--16298114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16298052 GTTGACTTAG
* *
16298062 GCATATGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16298088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16298114 G
1 G
16298115 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16298404 original size:26 final size:26
Alignment explanation
Indices: 16298368--16298420 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16298358 GTTCGCTTAG
16298368 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16298394 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16298420 G
1 G
16298421 ACTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16300449 original size:159 final size:158
Alignment explanation
Indices: 16300033--16300451 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 158
16300023 TGGACTGGGT
* * * *
16300033 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTTC-GCCAGCTGAGCGCCCGCATGCTCATTTCGTGGGT
* * * *
16300098 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCGAGGGTTGTGGCAGCGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCAAGGGTTGAGGCAGCAG
* *
16300163 GACCGACAGCACGCAGAGGGGGACCGAGT
130 GACCGACAACACGCAGAGGGGGACCGAGC
* * * * * * * *
16300192 CGGTCCCTGGCTTGCACATTATCCCTCTTCGACCGGCTCAGTGCCCGCATGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTTCG-CCAGCTGAGCGCCCGCATGCTCATTTCGTGGGT
* * * ** ** * *
16300257 TGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGATCGGA-TCGGAGCAAGGGTTGAGGCAGC
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACT-GAACCAAGGGTTGAGGCAGC
* *
16300320 AGGATCGACAACATGCAG-GGGGTGACC-AGGC
128 AGGACCGACAACACGCAGAGGGG-GACCGA-GC
* * * * * *
16300351 CGATCCCCGACTTACGCATTCTACCTCTTCAGCCAGCTGAGCGCCCGTACGCTCTTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTTC-GCCAGCTGAGCGCCCGCATGCTCATTTCGTGGGT
*
16300416 TGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16300452 ATACAGAGTT
Statistics
Matches: 206, Mismatches: 47, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 10 0.05
159 192 0.93
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.23
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTTCGCCAGCTGAGCGCCCGCATGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGAACCAAGGGTTGAGGCAGCAGG
ACCGACAACACGCAGAGGGGGACCGAGC
Found at i:16300453 original size:26 final size:26
Alignment explanation
Indices: 16300424--16300476 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300414 GTTGGCTTAG
* *
16300424 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16300450 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16300476 G
1 G
16300477 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16301031 original size:26 final size:26
Alignment explanation
Indices: 16301000--16301049 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16300990 GTTAACTTAG
16301000 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16301026 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
16301050 GAGCGCCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16301426 original size:158 final size:158
Alignment explanation
Indices: 16301048--16301430 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 158
16301038 CATTCCCAGT
* * * *
16301048 CTGAGCGCCCACACGCCCGTTT-GATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCG-TGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * *
16301112 CCCCAGCCAGACCGAGGGTTGTGACAGCAGGATCGGCAGCACACAGAGGGGGATCGAGCCGATCT
64 CACCAGCCAGACCAAGGGTTGTGACAGCAGGATCGACAGCACACAGAGGGGGACCGAGCCGATCT
* * * *
16301177 TCGATTTGCGTATTATGCCTCTTCGACCTG
129 TCGACTTGCGCATTATGCCTCTCCGACCGG
* * * * * *
16301207 CTAAGCACGCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTG-CTTAGGCATACAGAGTTCATT-CCATGTCTAAG
* * * * * * *
16301271 -ATCAGACCAGATCAAGGGTTGT-AGTAGCAGGATCGATAGCACATAGGGGGGGACC-AGGCTGA
64 CACCAG-CCAGACCAAGGGTTGTGA-CAGCAGGATCGACAGCACACAGAGGGGGACCGA-GCCGA
* * **
16301333 T-TCTCGGCTTGCGCATTCT-CCTCTCCGGTCGG
126 TCT-TCGACTTGCGCATTATGCCTCTCCGACCGG
16301365 CTGAGCGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
16301430 A
65 A
16301431 TACGGAGTTC
Statistics
Matches: 179, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.02
158 68 0.38
159 105 0.59
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
CCAGCCAGACCAAGGGTTGTGACAGCAGGATCGACAGCACACAGAGGGGGACCGAGCCGATCTTC
GACTTGCGCATTATGCCTCTCCGACCGG
Found at i:16301438 original size:26 final size:26
Alignment explanation
Indices: 16301402--16301480 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16301392 GTTAGCTTAG
*
16301402 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16301428 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16301454 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16301480 G
1 G
16301481 ATTTGAGCCA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16302862 original size:26 final size:26
Alignment explanation
Indices: 16302828--16302880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16302818 GTTGACTTAG
*
16302828 GCATTCAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16302854 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16302880 G
1 G
16302881 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16303562 original size:159 final size:160
Alignment explanation
Indices: 16302854--16303677 Score: 566
Period size: 159 Copynumber: 5.2 Consensus size: 160
16302844 CCTAGTCTAA
* *
16302854 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGA-CAGGACCGAGGGTTGC-GACAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCA-GACCGAGGGTTGCAG-CAGCAGGATCA
* * *
16302916 ACAGCA--T-GCAGGGGGAT-TGAAC-CGATCCCCGACTTGCGCATTCTGCCTC-TCTGGCCGAC
63 ACAGCACGTAG-AGGGGGATCAG-GCTCGATCCCCGACTTGCGCATTCTGCCTCTTC-GGCCGGC
* * * * * *
16302975 TGAGTGCCCACACGCCCATTTCATGGGTTGGCTTAG
125 TCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
16303011 GCATAGGGAGTTCATTCCATGTCTAAGCACTCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGA-C
1 GCATACGGAGTTCATTCCATGTCTAAG-A-T-C-AGACCAGACCGAGGGTTGCAGCAGCAGGATC
** * * * *
16303074 TGGCAGCACGTAGAGGGGGATC-GGGTCGATCCCCGACTTGCGCATTATGCCTCTTCTGTCGGCT
62 -AACAGCACGTAGAGGGGGATCAGGCTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCT
* * * * * *
16303138 CAACACCCGCACGCTCATTTCATGGGTTGACTTAT
126 CAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
16303173 GCATACAGAGTTTCATTCCA-GTCTAGACGATCAGATCGGACTGA-GGTTGCAGTAGTAGGATCA
1 GCATACGGAG-TTCATTCCATGTCTA-A-GATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCA
* * * * * ** * * * ** *
16303236 ACAGCACATTGGGGGGGATCATGCT-GATCCTCGACTTGCATATTCTGTCTATCCGATCGGCTGA
63 ACAGCACGTAGAGGGGGATCAGGCTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCA
* *
16303300 GCGCCCGCATGCCCGTTT-GATGGGTTGGCTTAG
128 GCGCCCGCACGCTCGTTTCG-TGGGTTGGCTTAG
* * * ** * *
16303333 GCATAGGGCGTTGATTCCATGTCTAAGGCCCAG-CCAGACCGA-GGTCTG-TGCTAGTAGGA-CT
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACCAGACCGAGGGT-TGCAGC-AGCAGGATC-
* * * * * * * * *
16303394 AGCAACACGTCGAAGGGGA-CAGGGTCGATCCCCGGCTTGCACAATATGCCTCTTCGGCCGGCTC
62 AACAGCACGTAGAGGGGGATCAGGCTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTC
* ** * *
16303458 AGTGCCCATACGCTCGTTTCGTGGGTTGACTTAT
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16303492 GCATACGGAGTTTATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAAC
* *
16303556 AGCACGTAGAGGGGGATCCA-GCT-GATCCCC-AGCTTGCGCATTCTGCCTC-TCTGGCCGGTTA
65 AGCACGTAGAGGGGGAT-CAGGCTCGATCCCCGA-CTTGCGCATTCTGCCTCTTC-GGCCGGCTC
* * *
16303617 AACGCCCGCACGCTCGTTTCGTTGGTTGGCTTAC
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16303651 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16303678 CATACGGAGT
Statistics
Matches: 511, Mismatches: 119, Indels: 72
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 21 0.04
158 25 0.05
159 216 0.42
160 132 0.26
161 17 0.03
162 82 0.16
163 14 0.03
164 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACA
GCACGTAGAGGGGGATCAGGCTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16303673 original size:318 final size:317
Alignment explanation
Indices: 16302854--16303679 Score: 902
Period size: 319 Copynumber: 2.6 Consensus size: 317
16302844 CCTAGTCTAA
* *
16302854 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGC-GACAGCAGGATCGAC
1 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACA-GACCGAGGGTTGCAG-CAGCAGGATCAAC
* * * * *
16302918 AGCA-TGCAGGGGGATTGAACCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGC
64 AGCACTG-AGGGGGA-TCAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
* * *
16302982 CCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACTCCTAG
127 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACTCCTAG
* * * * *
16303047 CCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGACT
192 CCAGACCGAGGGTTGTGGCAGCAGGACTAGCAACACGTAGAAGGGGATCGGGTCGATCCCCGACT
* * * * *
16303112 TGCGCATTATGCCTCTTCTGTCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTAT
257 TGCACAATATGCCTCTTCGGCCGGCTCAACACCCACACGCTCATTTCATGGGTTGACTTAT
* * * *
16303173 GCATACAGAGTTTCATT-CCAGTCTAGACGATCAGATCGGACTGA-GGTTGCAGTAGTAGGATCA
1 GCATACAGAGTTT-ATTCCCAGTCTA-A-GATCAGA-CAGACCGAGGGTTGCAGCAGCAGGATCA
* * ** * * * **
16303236 ACAGCACATTGGGGGGGATCATGCTGATCCTCGACTTGCATATTCTGTCTATCCGATCGGCTGAG
62 ACAGCAC--TGAGGGGGATCA-GCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAG
* * * *
16303301 CGCCCGCATGCCCGTTT-GATGGGTTGGCTTAGGCATAGGGCGTTGATTCCATGTCTAAG-GC-C
124 CGCCCGCACGCCCGTTTCG-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACTC
* *
16303363 C-AGCCAGACCGA-GGTCTGT-GCTAGTAGGACTAGCAACACGTCGAAGGGGA-CAGGGTCGATC
188 CTAGCCAGACCGAGGGT-TGTGGC-AGCAGGACTAGCAACACGTAGAAGGGGATC-GGGTCGATC
* *** * * *
16303424 CCCGGCTTGCACAATATGCCTCTTCGGCCGGCTCAGTGCCCATACGCTCGTTTCGTGGGTTGACT
250 CCCGACTTGCACAATATGCCTCTTCGGCCGGCTCAACACCCACACGCTCATTTCATGGGTTGACT
16303489 TAT
315 TAT
*
16303492 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACAGAGTTTATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCAGCAGCAGGATCAACA
* * *
16303557 GCACGTAGAGGGGGATCCAGCTGATCCCC-AGCTTGCGCATTCTGCCTCTCTGGCCGGTTAAACG
65 GCAC-T-GAGGGGGAT-CAGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCG
* * * *
16303621 CCCGCACGCTCGTTTCGTTGGTTGGCTTACGCATATGGAGTTCATTCCATGTCTAAGCA
126 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
16303680 TACGGAGTTC
Statistics
Matches: 414, Mismatches: 73, Indels: 40
0.79 0.14 0.08
Matches are distributed among these distances:
317 15 0.04
318 122 0.29
319 143 0.35
320 26 0.06
321 16 0.04
322 90 0.22
323 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTTATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCAGCAGCAGGATCAACAG
CACTGAGGGGGATCAGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGC
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACTCCTAGCCAG
ACCGAGGGTTGTGGCAGCAGGACTAGCAACACGTAGAAGGGGATCGGGTCGATCCCCGACTTGCA
CAATATGCCTCTTCGGCCGGCTCAACACCCACACGCTCATTTCATGGGTTGACTTAT
Found at i:16303687 original size:26 final size:26
Alignment explanation
Indices: 16303651--16303702 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16303641 GTTGGCTTAC
*
16303651 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16303677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16303703 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16307218 original size:26 final size:26
Alignment explanation
Indices: 16307182--16307232 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16307172 TTGACTGAGG
*
16307182 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTAATCCCCAGTCTAAC
*
16307208 CATACGGAGTTAATTCCCAGTCTAA
1 CATACGGAGTTAATCCCCAGTCTAA
16307233 GATCGAATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTAATCCCCAGTCTAAC
Found at i:16308452 original size:156 final size:156
Alignment explanation
Indices: 16308215--16308499 Score: 394
Period size: 156 Copynumber: 1.8 Consensus size: 156
16308205 TTGTGGCAAT
* * * * * * * *
16308215 AGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGAGCGG
1 AGGATCAACAGCACGCAGGGGGACCGAGTCGATCCCTGACTTACGCATTCTACCTCTCCAAGCGA
*
16308280 CTGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCA-GTCTAAG
66 CTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAG
16308343 ATTAGATCGACCGAGGGTTACAGTAGC
130 ATTAGATCGACCGAGGGTTACAGTAGC
* * * *
16308370 AGGATCAACAGCACGCAGGGGGGACCGAGTCGGTTCTTGACTTACGCATTCTACCTCTCCAATCG
1 AGGATCAACAGCACGCA-GGGGGACCGAGTCGATCCCTGACTTACGCATTCTACCTCTCCAAGCG
* * *
16308435 ACTGAGCTCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 ACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
16308500 CATACGAAGT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
155 16 0.14
156 80 0.72
157 15 0.14
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
AGGATCAACAGCACGCAGGGGGACCGAGTCGATCCCTGACTTACGCATTCTACCTCTCCAAGCGA
CTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGA
TTAGATCGACCGAGGGTTACAGTAGC
Found at i:16308502 original size:26 final size:26
Alignment explanation
Indices: 16308473--16308525 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16308463 GTTGGCTTAG
16308473 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16308499 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16308525 G
1 G
16308526 ATCACATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16308716 original size:26 final size:26
Alignment explanation
Indices: 16308680--16308732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16308670 GTTGACTTAG
16308680 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
16308706 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
16308732 G
1 G
16308733 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16309614 original size:26 final size:26
Alignment explanation
Indices: 16309537--16309604 Score: 129
Period size: 25 Copynumber: 2.7 Consensus size: 26
16309527 GTTGGCTTAG
16309537 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16309563 GCATAC-GAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16309588 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
16309605 TGAGTCTAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 25 0.61
26 16 0.39
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16310342 original size:26 final size:26
Alignment explanation
Indices: 16310306--16310358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310296 GTTGACTTAG
16310306 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
16310332 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16310358 G
1 G
16310359 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16310425 original size:375 final size:369
Alignment explanation
Indices: 16309563--16310518 Score: 1036
Period size: 375 Copynumber: 2.6 Consensus size: 369
16309553 CCATGTCTAA
* ** * *
16309563 GCATAC-GAGTTCAT-TCCATGTCTAAGC-ATACGGAGTTCATTCTGAGTCTAAGATCAGACC-G
1 GCATACAGAGTTCATCCCCA-GTCTAAGCGATACAAAGTTCATTCTCAGTCTAAGATCAGACCAA
* * ** * ** * * * ** *
16309624 GACGGAGGGTTGCGGCAGCAGGATTGGTAGCACACAGTAAGGGATCGGGCTGATGCCC-AGCTTG
65 GTC-GAGGGTTGCGGTAGCAAAATCGACAGCACACAG-AGGGGACCAGGCCAAT-CCCTGGCTTG
* * * * * * *
16309688 CGCATTCTACCTCTTTGACCG-GTGAGTGCCCGCACG-CTCGTTTCGTAGGTTGGCTTAGGCATA
127 CGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCT-ATTTCGTGGGTTGGCTTAGGCATA
*
16309751 CAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGATAGCAAGACCGGCATTGGG
191 CAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGATAGCAAGACCGACATTGGG
* * * * *
16309816 ATTGGTAGGACGCAGAGGAGGAACGAGTTGATCCCCAGCTTGCACATTATGCCTCTTCGATCGGC
256 ATTGGCAGGACACAGAGGAGGAACGAGCTAATCCCCAGCTTGCACATTATGCCTCTTCGACCGGC
* *
16309881 CTCTCCAGTCGGCTAAGCGCCCACATGCTCATTTCATGGGTTGGCTTAG
321 CTCTCCAGTCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
* * *
16309930 GCATACGGAGTTCATCCCCAGTCTAAGCGATACAAAGTTCATTCTCAGTCTAAGATCGGACTAAG
1 GCATACAGAGTTCATCCCCAGTCTAAGCGATACAAAGTTCATTCTCAGTCTAAGATCAGACCAAG
* * ** * *
16309995 TTGAGGGTTGCGGTTGCAGGATTGATAGCACACAGAGGGGACCAGGCCAATCCCTGGCTTGCGCA
66 TCGAGGGTTGCGGTAGCAAAATCGACAGCACACAGAGGGGACCAGGCCAATCCCTGGCTTGCGCA
16310060 TTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAG
131 TTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAG
* * * *
16310125 -CCAATTCCATGTCTAAGCCCCAGTCGGATCGTGGGTTTGTGGTAGCGGGGAGGGACCGACA-TG
196 TTC-ATTCCATGTCTAAGCCCCAGTCGGATCGAGGG-TTGTGATAGC----A-AGACCGACATTG
** ** * *
16310188 GGATT-GCAGGACATGGAGGACTGGAGGGGGCTAATCCCCAGCTTGCACATTATGCCTCTTTGAC
254 GGATTGGCAGGACACAGAGGA--GGAACGAGCTAATCCCCAGCTTGCACATTATGCCTCTTCGAC
* * ** *
16310252 CTGGCCTCTCCAGTCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAG
317 C-GGCCTCTCCAGTCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
** **
16310306 GCATACAGAGTTCATCCCCAGTCTAAGC-ATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGG
1 GCATACAGAGTTCATCCCCAGTCTAAGCGATACAAAGTTCATTCTCAGTCTAAGATCAGACCAAG
* *** * * * *
16310370 TCGAGGGTTGCGGTAGCAAAATCGACGGCATGTAGGGGGGACTAGGCCTATCCCTGGCTTGCGTA
66 TCGAGGGTTGCGGTAGCAAAATCGACAGCACACAGAGGGGACCAGGCCAATCCCTGGCTTGCGCA
* * **
16310435 TTCTGCCTCTCCGG-CGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
131 TTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAG
16310499 TTCATTCCATGTCTAAGCCC
196 TTCATTCCATGTCTAAGCCC
16310519 TAGCCAGACC
Statistics
Matches: 497, Mismatches: 74, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
367 9 0.02
368 51 0.10
369 132 0.27
370 12 0.02
373 11 0.02
374 72 0.14
375 138 0.28
376 72 0.14
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (369 bp):
GCATACAGAGTTCATCCCCAGTCTAAGCGATACAAAGTTCATTCTCAGTCTAAGATCAGACCAAG
TCGAGGGTTGCGGTAGCAAAATCGACAGCACACAGAGGGGACCAGGCCAATCCCTGGCTTGCGCA
TTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAG
TTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGATAGCAAGACCGACATTGGGATTGG
CAGGACACAGAGGAGGAACGAGCTAATCCCCAGCTTGCACATTATGCCTCTTCGACCGGCCTCTC
CAGTCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:16310863 original size:26 final size:26
Alignment explanation
Indices: 16310813--16310865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310803 GTTGACTTAG
*
16310813 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
16310839 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
16310865 G
1 G
16310866 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:16311060 original size:26 final size:26
Alignment explanation
Indices: 16311008--16311060 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310998 GTTGGCTTAG
*
16311008 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16311034 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16311060 G
1 G
16311061 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16315223 original size:26 final size:26
Alignment explanation
Indices: 16315187--16315239 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16315177 GTTGGCTTAG
* *
16315187 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTCCATTCCCA-GTCTAA
16315213 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
16315239 G
1 G
16315240 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:16315776 original size:26 final size:26
Alignment explanation
Indices: 16315739--16315791 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16315729 GTTGACTTAG
16315739 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16315765 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
16315791 G
1 G
16315792 AATGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16316065 original size:119 final size:118
Alignment explanation
Indices: 16315850--16316068 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 118
16315840 GGGACCGGGC
* * * * *
16315850 CGATCCCCGGCTTACGCATTCTGCCTTTCGATCGATTGAGCACCCGCACGCCCATTTCATGGGTT
1 CGATCCCCGGCTTACGCATCCTGCCTCTCGATCGACTGAGCACCCGCACACCCATTTCACGGGTT
* * *
16315915 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTACCACCCGTT
66 GACTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGCCTACCACCCGTT
* * * * * *
16315968 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACACTCATTTCGCGGGT
1 CGATCCCCGGCTTACGCATCCTGCCTCTC-GATCGACTGAGCACCCGCACACCCATTTCACGGGT
*
16316033 TGACTTAGGCATACGGAGTTTATCCCCA-GTCTAAGC
65 TGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGC
16316069 ATACGGAGCT
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
118 26 0.31
119 55 0.65
120 3 0.04
ACGTcount: A:0.16, C:0.34, G:0.24, T:0.26
Consensus pattern (118 bp):
CGATCCCCGGCTTACGCATCCTGCCTCTCGATCGACTGAGCACCCGCACACCCATTTCACGGGTT
GACTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGCCTACCACCCGTT
Found at i:16316083 original size:26 final size:26
Alignment explanation
Indices: 16316041--16316116 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
16316031 GTTGACTTAG
*
16316041 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16316067 GCATACGGAGCTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16316093 GCATGCAGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16316117 CAGATCAGAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16316613 original size:159 final size:160
Alignment explanation
Indices: 16316220--16316912 Score: 604
Period size: 158 Copynumber: 4.4 Consensus size: 160
16316210 CGATTGAGCA
* * * * *
16316220 CCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * * * *
16316284 CGGACCGAGGGTTGTGGTAGCGGGACTGG-ACGCATGCAGAGGGGGACCGGGCCGATCCTCGACT
66 CAGACCAAGGGTTGTGGCAGCAGGACTGGCA-GCACGCAGAGGGGGACCGGGCCGATCCTCGGCT
* * *
16316348 TGTGCATTATGCCTCTTCGGCTGGCTCAGTG
130 TGCGCATTATGCCTCTCCGGCAGGCTCAGTG
* * * * * * * *
16316379 CCTGGATGCTCATTTCGTGGGTTGACTTATGCATACGGATTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
** * * ** * * *
16316442 CTGGATCGAGGGTTACGGCAGCAGGA-TCGGTAGCACGCA-AGTGGGACTGGGCCGATCC-CTGG
65 CCAGACCAAGGGTTGTGGCAGCAGGACT-GGCAGCACGCAGAGGGGGACCGGGCCGATCCTC-GG
* *
16316504 CTTGCGCATTTATGTCTCTCCGGTC-GGCTGAGTG
128 CTTGCGCA-TTATGCCTCTCCGG-CAGGCTCAGTG
* * * * *
16316538 CCCGCACGC-CTATTTTATGTGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-
1 CCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * *
16316601 CCAGACCAAGGGTTGTGGTAGCGGGACTGGCAGCACG-AGAGGGGGACCGAGCCGATCCTCGGCT
65 CCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCT
* * * * *
16316665 TACGCACTATGCCTCTTCGACCGGCTCAGTG
130 TGCGCATTATGCCTCTCCGGCAGGCTCAGTG
* * * * * * * * *
16316696 CCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGAATTTCATTCC-TAGTTTAAG-ATCAGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA
* * * * * * *
16316759 CCAGACCAAGGGTTGTGGCAGCAAGATTGACAGGACGTAG-GGGGGATCGGGCCGATCCCCGGCT
65 CCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCT
* * *
16316823 TGCGCATTCTGCCTCTCCGGCAGGCTGAGCG
130 TGCGCATTATGCCTCTCCGGCAGGCTCAGTG
* * *
16316854 CTCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16316913 TACGGGGTTC
Statistics
Matches: 417, Mismatches: 97, Indels: 40
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.01
158 214 0.51
159 187 0.45
160 10 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTT
GCGCATTATGCCTCTCCGGCAGGCTCAGTG
Found at i:16316726 original size:317 final size:317
Alignment explanation
Indices: 16316103--16316911 Score: 939
Period size: 317 Copynumber: 2.6 Consensus size: 317
16316093 GCATGCAGAG
* ** * * * ** *
16316103 TTCATTCCCAGTCTCAGATCAGACC-GAACTGAGGGTTGCGACAGCAGGATCGGTAGCACAC-AG
1 TTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAAG
* * * ** ** * ** * *
16316166 GGGGATCGGGTCTATCCCCGGCTTGCACATGCTGCCTCTTTGGCCGATTGAGCACCCGCACGTTC
65 GGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTC
* * * * *
16316231 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
130 ATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGT
* * ** *
16316296 TGTGGTAGCGGGACTGGACGCATGCAGAGGGGGACCGGGCCGATCCTCGACTTGTGCATTATGCC
195 TGTGGTAGCGGGACTGGACGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTACGCACTATGCC
* * * * *
16316361 TCTTCGGCTGGCTCAGTGCCTGGATGCTCATTTCGTGGGTTGACTTATGCATACGGAT
260 TCTTCGACCGGCTCAGTGCCCGGACGCTCATTTCGTGGGTTGACTTATGCATACGAAT
** * * * ** *
16316419 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAAGT
1 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGG
* * *
16316484 GGGA-CTGGGCCGATCCCTGGCTTGCGCATTTATGTCTCTCCGGTC-GGCTGAGTGCCCGCACGC
66 GGGATC-GGGCCGATCCCCGGCTTGCGCA-TTATGCCTCTCCGG-CAGGCTGAGCGCCCGCACGC
* *
16316547 -CTATTTTATGTGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCAGACCAAG
128 TC-ATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAG
*
16316611 GGTTGTGGTAGCGGGACTGG-CAGCACG-AGAGGGGGACCGAGCCGATCCTCGGCTTACGCACTA
192 GGTTGTGGTAGCGGGACTGGAC-GCACGCAGAGGGGGACCGAGCCGATCCTCGACTTACGCACTA
* *
16316674 TGCCTCTTCGACCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGAAT
256 TGCCTCTTCGACCGGCTCAGTGCCCGGACGCTCATTTCGTGGGTTGACTTATGCATACGAAT
* * ** * * * *
16316736 TTCATTCCTAGTTTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATTGACAGGACGTAGGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGG
* * *
16316801 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCTCGCACGCTCG
66 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCA
*
16316866 TTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 TTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16316912 ATACGGGGTT
Statistics
Matches: 416, Mismatches: 67, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 124 0.30
317 188 0.45
318 102 0.25
319 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (317 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGG
GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCA
TTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
GTGGTAGCGGGACTGGACGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTACGCACTATGCCT
CTTCGACCGGCTCAGTGCCCGGACGCTCATTTCGTGGGTTGACTTATGCATACGAAT
Found at i:16316922 original size:26 final size:26
Alignment explanation
Indices: 16316884--16316936 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16316874 GTTGGCTTAG
16316884 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16316910 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16316936 G
1 G
16316937 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16318326 original size:26 final size:26
Alignment explanation
Indices: 16318290--16318342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16318280 TTTGGCTTAG
16318290 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16318316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16318342 G
1 G
16318343 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16319700 original size:26 final size:26
Alignment explanation
Indices: 16319670--16319722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16319660 GTTGACTTAG
*
16319670 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16319696 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16319722 G
1 G
16319723 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16320175 original size:158 final size:158
Alignment explanation
Indices: 16319696--16320197 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
16319686 CCCAGTCTAA
* * * *
16319696 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGATCAGACTGAGGGTTGCGGGAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * ** * *
16319760 AGCATGCAT-GGGGGACCGAGCTGATCTTCGGCTTACGTATTCTGCCTTTTCGATCGGTTGAGCG
65 AGCACGCATAGGGGGACAG-GCCGATCCACGGCTTACGCATTCTGCCTCTTCGATCGGTTGAGCG
* * * * *
16319824 CCCGCACACCCATTCCGTGCGTTGGCTTAG
129 CCTGCACACTCGTTTCGTGGGTTGGCTTAG
** ** * * * * *
16319854 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * ** * *
16319918 ATCACGCAGAGGGGGACCGGGTCGATCCATGGCTTGCGCATTATGCCTCTTCGATCGACTCAACG
65 AGCACGCATAGGGGGA-CAGGCCGATCCACGGCTTACGCATTCTGCCTCTTCGATCGGTTGAGCG
* * *
16319983 CCCT-CACGCTCGTTTCGTGGGTTGACTTAT
129 -CCTGCACACTCGTTTCGTGGGTTGGCTTAG
16320013 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * **
16320077 AGCACG-ATAGGGGGACTAGGCCGATCCCCAGCTTATGCATTCTACCTC-TCTGGCCGGTTGAGC
65 AGCACGCATAGGGGGAC-AGGCCGATCCACGGCTTACGCATTCTGCCTCTTC-GATCGGTTGAGC
*
16320140 GCCTGCACACTCGTTTTGTGGGTTGGCTTAG
128 GCCTGCACACTCGTTTCGTGGGTTGGCTTAG
*
16320171 GCATACAAAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
16320198 CATACGGAGT
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 12 0.05
158 135 0.51
159 112 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACGCATAGGGGGACAGGCCGATCCACGGCTTACGCATTCTGCCTCTTCGATCGGTTGAGCGCC
TGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:16326959 original size:26 final size:26
Alignment explanation
Indices: 16326923--16326975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16326913 GTTGACTTAG
16326923 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16326949 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16326975 G
1 G
16326976 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16327456 original size:26 final size:26
Alignment explanation
Indices: 16327426--16327478 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16327416 GTTGGCTTAG
** **
16327426 GCATACGGTGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16327452 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16327478 G
1 G
16327479 AGTTTGAGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16328185 original size:26 final size:26
Alignment explanation
Indices: 16328148--16328200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16328138 GTTTACTTAG
16328148 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
16328174 GCATAT-AGAGTTCATTCCCAGTCTAA
1 GCATATGA-AGTTCATCCCCAGTCTAA
16328200 G
1 G
16328201 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:16328692 original size:23 final size:22
Alignment explanation
Indices: 16328661--16328703 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
16328651 GCTTAGGCAT
*
16328661 TACGGAGTTCATTCCATGTCTGA
1 TACGAAGTTCATTCCA-GTCTGA
16328684 TACGAAGTTCATTCCAGTCT
1 TACGAAGTTCATTCCAGTCT
16328704 ACTAAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (22 bp):
TACGAAGTTCATTCCAGTCTGA
Found at i:16331347 original size:25 final size:26
Alignment explanation
Indices: 16331314--16331365 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16331304 ATTGACTTAG
16331314 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16331339 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16331365 G
1 G
16331366 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16332547 original size:26 final size:26
Alignment explanation
Indices: 16332511--16332563 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16332501 ATCGGCTTAG
* *
16332511 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
16332537 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16332563 G
1 G
16332564 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16334405 original size:26 final size:26
Alignment explanation
Indices: 16334369--16334419 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16334359 TTGACTTAGG
16334369 CATACGAAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAGTCTAAA
* *
16334395 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
16334420 GATTGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAA
Found at i:16334898 original size:159 final size:159
Alignment explanation
Indices: 16334395--16334916 Score: 519
Period size: 159 Copynumber: 3.3 Consensus size: 159
16334385 CCAGTCTAAA
* * * * * * * *
16334395 CATACGGAGTTCATTCCCAGTCTAAGATTGAACCGAACTGAGGGTTACGACAGTAAGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTATGATAGCAGGATTGACAG
* * * * * * * * *
16334460 CATGCA-AGGGGGATCGGGCCAATCCCCGGCTTGCACATTTTGCCTCTCCGGCCGGCTGAGCGCC
66 CACGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCC
16334524 CACACG-TCCATTTTGTGGGTTGGCTTAGG
131 CACACGCT-CATTTTGTGGGTTGGCTTAGG
* * ** * * * * * * *
16334553 CATAGGGGGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCGGGACTGGCA
1 CATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTATGATAGCAGGATTGACA
* * * * * *
16334617 GCACGCAGAAGGGGATCGGGTCGATTCTTGACTTGCGCATTATGCCTTTCCAGTTGGCTCAGCGC
65 GCACGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGC
** **
16334682 CCACACGCTCATTTCATGGGTTAACTTAGG
130 CCACACGCTCATTTTGTGGGTTGGCTTAGG
* * * *
16334712 CATACGTAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGAGTTATGATAGCAGGATTGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTATGATAGCAGGATTGACAG
* * * * * * *
16334777 CACGCAGAGGGGGACCGAGTCGATCCCTGACTTACGCATTCTACCTCTCCAGTCGACTGAGTGCC
66 CACGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCC
*
16334842 CGCACGCTCATTTTGTGGGTTGGCTTAGG
131 CACACGCTCATTTTGTGGGTTGGCTTAGG
* * * *
16334871 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTT
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
16334917 GCGACAGCTG
Statistics
Matches: 282, Mismatches: 78, Indels: 7
0.77 0.21 0.02
Matches are distributed among these distances:
157 3 0.01
158 47 0.17
159 228 0.81
160 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTATGATAGCAGGATTGACAG
CACGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCC
CACACGCTCATTTTGTGGGTTGGCTTAGG
Found at i:16335250 original size:25 final size:26
Alignment explanation
Indices: 16335212--16335263 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16335202 GTTGACTTAG
16335212 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16335238 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16335263 G
1 G
16335264 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16336251 original size:26 final size:26
Alignment explanation
Indices: 16336221--16336273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16336211 GTTGGCTTAG
16336221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16336247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16336273 G
1 G
16336274 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16337055 original size:26 final size:26
Alignment explanation
Indices: 16337004--16337056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16336994 GTTGGCTTAG
*
16337004 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
16337030 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
16337056 G
1 G
16337057 ATCTAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16337773 original size:159 final size:159
Alignment explanation
Indices: 16337524--16337900 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 159
16337514 CCGATTGAGT
* * * *
16337524 GCCCGCACGCCCGTTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
** * * * * **
16337588 CGAACTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAACGGGGGATCGGCTCAAACCCTGGATT
66 CGAACTGAGGGTTGCAGCAGCAGGATCGACAACAAGC-ACGGGGGATCGGCTCAAACCCCAGATT
* * * *
16337653 GCGCATTATGCCTTTTCGG-TCGACTCAGC
130 GCACATTATACCTCTCCGGTTCGACTCAGC
* * * * *
16337682 GCCCGTACACTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAG
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * * * * *
16337745 ATCGAACTGAGGGTTGCAGCAGTAGGATCGACAATAAGCAGGGGGGATCGGGTCGATCCCCAGCT
65 -CCGAACTGAGGGTTGCAGCAGCAGGATCGACAACAAGCACGGGGGATCGGCTCAAACCCCAGAT
* * *
16337810 TGCACATTCTACCTCTCCGGTTCGGCTGAGC
129 TGCACATTATACCTCTCCGGTTCGACTCAGC
* *
16337841 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16337901 TACGGAGTTA
Statistics
Matches: 175, Mismatches: 38, Indels: 10
0.78 0.17 0.04
Matches are distributed among these distances:
158 56 0.32
159 115 0.66
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
CGAACTGAGGGTTGCAGCAGCAGGATCGACAACAAGCACGGGGGATCGGCTCAAACCCCAGATTG
CACATTATACCTCTCCGGTTCGACTCAGC
Found at i:16337908 original size:26 final size:26
Alignment explanation
Indices: 16337872--16337949 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16337862 GTTGGCTTAG
16337872 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16337898 GCATACGGAGTTAATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16337924 GCATACGGAGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
16337950 TATTTTGAGC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 44 0.90
27 5 0.10
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16339124 original size:157 final size:157
Alignment explanation
Indices: 16338646--16339145 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 157
16338636 CCCAGTCTAA
* *
16338646 GCATATGGAGTTCATTCCCA-GTCTAAGATCAAACTGGACTGAGGGTTGTGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * *
16338710 AGCACGTAGGAGGGACCGGG-CTGAT-CCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGT
65 AGCACGCAGGAGGGACCGGGTC-GATCCCCAG-CTTGCGCATTCTGCCTCTCTGG-CGGCTGAGC
* *
16338773 ACCCGCACGCCCGTTTCATGGGATGGCTTAG
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * ** * * *
16338804 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGCGTTATGGTAGC-GAGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAG-GATCGGC
* * * * * * * *
16338868 AGCACGCAGCGAGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCT-ACCGCTCAACG
65 AGCACGCAG-GAGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTC-TCTGGCGGCTGAGCA
* *
16338932 CCCGCAC-ATACGTTTCATGGGTTGACTTAG
128 CCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * * * **
16338962 GCATACGGAGTTCATTCCCA-GTCTAA-ATCAAACCGAACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * *
16339025 AGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTACGTATTCTGCCTCTCTGGCTGGCTGAGCAC
65 AGCACGCAGGAGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGC-GGCTGAGCAC
* *
16339090 CCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
16339119 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16339146 CATAGGAAGT
Statistics
Matches: 272, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
155 3 0.01
156 37 0.14
157 83 0.31
158 109 0.40
159 32 0.12
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACGCAGGAGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16339156 original size:26 final size:26
Alignment explanation
Indices: 16339119--16339171 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339109 GTTGGCTTAG
16339119 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16339145 GCATA-GGAAGTTCATTCCCAGTCTAA
1 GCATACGG-AGTTCATTCCCAGTCTAA
16339171 G
1 G
16339172 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16339536 original size:26 final size:26
Alignment explanation
Indices: 16339500--16339552 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339490 GTTGACTTAG
16339500 GCATACAGAGTGAATCCCCAGTCTAA
1 GCATACAGAGTGAATCCCCAGTCTAA
* ** *
16339526 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGAATCCCCAGTCTAA
16339552 G
1 G
16339553 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTGAATCCCCAGTCTAA
Found at i:16339888 original size:159 final size:158
Alignment explanation
Indices: 16339532--16339901 Score: 381
Period size: 159 Copynumber: 2.3 Consensus size: 158
16339522 CTAAGCATGC
* * ** * * *
16339532 AGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTGGCAGGATCGGCAGCACGT
1 AGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGACCAGCAGCACGC
** * *
16339597 AGGGGGGACCGCACCGATCCTCAGCTTACGTATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACG
66 AGGGGGGACCGCACCGATCCTCAGCTTACACATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACG
*
16339662 CCCGTTTCATGGGTTGGCTTAGGCATAG
131 CCCGTTTCATGGGTTGACTTAGGCATAG
* * ** * * * *
16339690 GGAGTTCATT-CCATGTATAAGCCCCA-ACCAAATCGAGGGTTGTGGCAGCAGGACCAGTAGCAT
1 AGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTGCGGCAGCAGGACCAGCAGCAC
* * * * *
16339753 GCAGAGGGGGATCG-AGCCGATCCTC-GACTTGCACATTATGTCTCTTCGGCTGGCTCAGTGCCC
64 GCAG-GGGGGACCGCA-CCGATCCTCAG-CTTACACATTATGCCTCTTCGGCCGGCTCAGCGCCC
* * *
16339816 GCACGCTCGTTTCATGGGTTGACTTATGCATAT
126 GCACGCCCGTTTCATGGGTTGACTTAGGCATAG
* *
16339849 AGAGTTCATTCCCAGTCTAAGATCAGACCGAA-CTGAGGGTTACGGTAGCAGGA
1 AGAGTTCATTCCCAGTCTAAGATCAGACCGAATC-GAGGGTTGCGGCAGCAGGA
16339902 TTGACAGCTC
Statistics
Matches: 168, Mismatches: 36, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 51 0.30
159 111 0.66
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
AGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGACCAGCAGCACGC
AGGGGGGACCGCACCGATCCTCAGCTTACACATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACG
CCCGTTTCATGGGTTGACTTAGGCATAG
Found at i:16340052 original size:26 final size:26
Alignment explanation
Indices: 16340001--16340053 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339991 GTTGGCTTAG
* *
16340001 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGCCTAA
16340027 GCATAAGGAGTTCATTCCCA-GCCTAA
1 GCATAAGGAGTTCATT-CCATGCCTAA
16340053 G
1 G
16340054 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGCCTAA
Found at i:16346934 original size:159 final size:157
Alignment explanation
Indices: 16346645--16347145 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 157
16346635 CCCAGTCCAA
* * **
16346645 GCATACGGAGTTCATT-CATAGTCTAAGATCAGACCAGACCTAGGGTTGCGACAGCAGGATTGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCACACCAGACCGAGGGTTGCGACAGCAGGACCGGC
* * * * * * *
16346709 AGCATGCAGGGGGATCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTCGGTTGAGTGCC
65 AGCACGCAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTAGCTTGAGCGCC
*
16346774 CGCACGC-CTATTTCATGGGTTGGCTTAG
130 CGCACGCTC-ATTTCATGGGTTGACTTAG
* * * * *
16346802 GCATAGGGAGTTCATTCCATGTCTAAG-TCACAGCCCGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCACA-CCAGACCGAGGGTTGCGACAGCAGGACCGGC
*
16346866 AGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAGCTT-AGC
65 AGCACGC--AGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGG-TAGCTTGAGC
**
16346930 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * ** * * **
16346961 GCATACAGAGTTCATTCCCTGTCTTAGATTGA-ACTAGACCGAGGGTTGCGGTAGCAGAATCAAC
1 GCATACGGAGTTCATTCCATGTCTAAGA-TCACACCAGACCGAGGGTTGCGACAGCAGGACCGGC
* * * * * * * * **
16347025 AGCACGTAGGGGAGACCGGACTGGT-CCTCGACTTACGCATTCTGCCTCTTCGACCAGC-TGAGC
65 AGCACGCAGGGG-GACCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCG-GTAGCTTGAGC
* * * * *
16347088 ACCCGTACGATCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAG
*
16347119 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16347146 CATATGGAGT
Statistics
Matches: 278, Mismatches: 54, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 61 0.22
158 85 0.31
159 120 0.43
160 6 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCACACCAGACCGAGGGTTGCGACAGCAGGACCGGCA
GCACGCAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTAGCTTGAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:16347537 original size:26 final size:26
Alignment explanation
Indices: 16347501--16347551 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347491 TGACTTAGGC
16347501 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
16347527 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
16347552 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:16347890 original size:26 final size:26
Alignment explanation
Indices: 16347840--16347892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347830 GTTGACTTAT
* *
16347840 GCATACGGAGTTCAGTCTCAGTCTAA
1 GCATACGGAGTTCAGTCCCAATCTAA
*
16347866 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAGTCCCAATCTAA
16347892 G
1 G
16347893 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAATCTAA
Found at i:16347908 original size:341 final size:340
Alignment explanation
Indices: 16347467--16348208 Score: 904
Period size: 341 Copynumber: 2.2 Consensus size: 340
16347457 GCTGACTGAG
* *
16347467 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGTATACG
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACG
* * * * *
16347532 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTCGCGGTAGCAAGATCGGTAGCACGTA
65 GAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTCGCGGCAGCAAGATCGGCAGCACGCA
* * * * *
16347597 GGGGGGACCGAG-TCGATCCCCAGCTTGCACATTCTGCCTCTCCGA-TCGGCTGGGCACCCGCAC
130 GGGGGGACCGGGCT-AATCCCCAGCTTACACATTCTGCCTCTCCGACT-GGCCGAGCACCCGCAC
* * * * *
16347660 GCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGATCGA
193 ACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTGCATTCCATGTCTAAGCCCCAGCCGGACCGA
** *
16347725 GGGTTGTGGCAGTGGGACCGGTAGCACGTAG-GGGGACC-AGGCCGATCC-CTGGCTTG-TGCAT
258 GGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGACCGA-GCCGATCCTC-GGCTTGCT-CAT
*
16347786 TATACCTTTTC-GATCGGCTCAA
320 TATACC-TTTCGGCT-GGCTCAA
* * *
16347808 CACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAGTCTCAGTCTAAGCATACG
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATACG
* * * * *
16347873 GAGTTCATTCCCAATCTAAGATCGAATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
65 GAGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTCGCGGCAGCAAGATCGGCAGCACGCA
* * * ** * *
16347938 GGGGGGATCGGGCTAATCCTCGGCTTATGCATTTTGCCTCTCCGACTGGCCGAGCGCCCGCACAC
130 GGGGGGACCGGGCTAATCCCCAGCTTACACATTCTGCCTCTCCGACTGGCCGAGCACCCGCACAC
* * *
16348003 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTGCATTCCATTTCTAAGCCTCAGCTGGACCGAGG
195 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTGCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
* * * *
16348068 GTTGTGGCAGTGGGATCGACAGCACGCAGAAGGGGATCGAGCTGATCCTCGGCTTGCTCATTATG
260 GTTGTGGCAGTGGGACCGACAGCACGCAG-AGGGGACCGAGCCGATCCTCGGCTTGCTCATTATA
*
16348133 CCTTTCGGCTGGCTCAG
324 CCTTTCGGCTGGCTCAA
* * * *
16348150 CGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
16348209 ATCAGACCGG
Statistics
Matches: 340, Mismatches: 52, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
341 244 0.72
342 64 0.19
343 29 0.09
344 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (340 bp):
CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGG
AGTTCATTCCCAATCTAAGATCGAACCAGACTGAGGGTCGCGGCAGCAAGATCGGCAGCACGCAG
GGGGGACCGGGCTAATCCCCAGCTTACACATTCTGCCTCTCCGACTGGCCGAGCACCCGCACACC
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTGCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGCAGTGGGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCTCATTATACC
TTTCGGCTGGCTCAA
Found at i:16348154 original size:158 final size:158
Alignment explanation
Indices: 16347901--16348186 Score: 380
Period size: 158 Copynumber: 1.8 Consensus size: 158
16347891 AGATCGAATC
* * * *
16347901 GGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCTAATCCTCGGCTTAT
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGCTAATCCTCGGCTTAT
* * *
16347966 GCATTTTGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCATAGG
16348031 GAGTGCATTCCATTTCTAAGCCTCAGCT
131 GAGTGCATTCCATTTCTAAGCCTCAGCT
** *
16348059 GGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAAGGGGATCGAGCTGATCCTCGGCTTG
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-AGGGGATCGAGCTAATCCTCGGCTT-
* * * * * *
16348124 CT-CATTATGCCT-TTCGGCTGGCTC-AGCGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCAT
64 ATGCATTATGCCTCTCCGACTGGC-CGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCAT
16348186 A
128 A
16348187 CGAAGTTCAT
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
158 76 0.70
159 32 0.29
160 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (158 bp):
GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGCTAATCCTCGGCTTAT
GCATTATGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCATAGG
GAGTGCATTCCATTTCTAAGCCTCAGCT
Found at i:16348198 original size:158 final size:158
Alignment explanation
Indices: 16347901--16348251 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
16347891 AGATCGAATC
* * * *
16347901 GGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCTAATCCTCGGCTTAT
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGCTAATCCTCGGCTTAT
* * * *
16347966 GCATTTTGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCATACG
*
16348031 GAGTGCATTCCATTTCTAAGCCTCAGCT
131 AAGTGCATTCCATTTCTAAGCCTCAGCT
** *
16348059 GGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGAAGGGGATCGAGCTGATCCTCGGCTTG
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-AGGGGATCGAGCTAATCCTCGGCTT-
* * * * * *
16348124 CT-CATTATGCCT-TTCGGCTGGCTC-AGCGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCAT
64 ATGCATTATGCCTCTCCGACTGGC-CGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCAT
* * * *
16348186 ACGAAGTTCATTCCCA-GTCTAAG-ATCAGACC
128 ACGAAGTGCATT-CCATTTCTAAGCCTCAG-CT
* ** * *
16348217 GGATCGAGGGTTACGGTAGCATGATCGACAGCACG
1 GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
16348252 TAGGTGGGGG
Statistics
Matches: 159, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.03
158 119 0.75
159 35 0.22
160 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGATCGAGCTAATCCTCGGCTTAT
GCATTATGCCTCTCCGACTGGCCGAGCGCCCGCACACCCGTTTCGTGAGTTGACTTAGGCATACG
AAGTGCATTCCATTTCTAAGCCTCAGCT
Found at i:16348598 original size:26 final size:26
Alignment explanation
Indices: 16348555--16348631 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
16348545 TGACATAGGA
*
16348555 ATATGGAGTTCATCCCCAGTCTAAGC
1 ATATGGAGTTCATTCCCAGTCTAAGC
16348581 ATACT-GAGTTCATTCCCAGTCTAAGC
1 ATA-TGGAGTTCATTCCCAGTCTAAGC
16348607 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
16348632 ATCAGATTGG
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
25 1 0.02
26 46 0.96
27 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGC
Found at i:16348912 original size:158 final size:158
Alignment explanation
Indices: 16348605--16349740 Score: 885
Period size: 158 Copynumber: 7.2 Consensus size: 158
16348595 CCCAGTCTAA
* ** ** * ** * *
16348605 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATTGGACCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * * * * * *
16348669 AACACGCAG-GGGGGACCGAGTCGATCTCTGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTG
64 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* * * *
16348733 CCCGCATGCCCGTTTTGTGGGTTGGCTTAG
129 CCTGCACGCTCGTTTTATGGGTTGGCTTAG
* * * * * *
16348763 GCATAGGGAATTCATTCCATGTCTAAGCCCCGTCGGACCGAGGGTTGTGGCA-CTAGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGC-AGGATCGATA
* * *
16348827 GCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGTATTATGCCTCTCCGACCGGCTCAGCAC
65 GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
** * *
16348892 CTGCACGCTCGTTGAATGGGTTGACTTAT
130 CTGCACGCTCGTTTTATGGGTTGGCTTAG
** * ** * * *
16348921 GCATACGGAGTTCATTCTCA-GTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * ** * * * *
16348985 AGCACGTA-AGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCG
64 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* *
16349049 CCTGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCTGCACGCTCGTTTTATGGGTTGGCTTAG
* * * * * * *
16349079 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGGACCAACA
1 GCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
16349144 GCACGCAGAGGGGGACCGGGTCGAT-CCCGGCTTGTGCATTATGCCTCTTCGGCCAGCTCAGCAC
65 GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* * * * * *
16349208 CCGCACACTCATTTTGTGGGTTGACTTAT
130 CTGCACGCTCGTTTTATGGGTTGGCTTAG
* * * * * **
16349237 GCATACGGAGTTCATTTC-TAGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGAT
** * * * * * *
16349301 AGCACGCAG-GGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTG
64 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* **
16349365 TTCTGCACGC-CGATTTCGTGGGTTGGCTTAG
129 -CCTGCACGCTCG-TTTTATGGGTTGGCTTAG
* * * * * *
16349396 GCATAGGGAGTTCATTCCATGTTTAAGCCCTAGCCGGATCGAGGGTTGTGGTAGCGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
16349461 G-ATGCAGAGGGGGACCGGGCCAATCCCCGGCTAGCGCATTATACCTCTTCGATCGGCTCAGCGC
65 GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
*
16349525 CTGCACGCTCATTTTATGGGTT-GCTTAG
130 CTGCACGCTCGTTTTATGGGTTGGCTTAG
* **** * ** *
16349553 GCATACAGAGTTCATTCC-TAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAAGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * ** * * * * * * *
16349617 AGCACACAG-GTGAGGGATCGGGTCGATCCCTAGCTTACGCTTTCTACCTCTCCTACCGGCTGAA
64 AGCACGCAGAG-G-GGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
* * **
16349681 CGCCCGCACGCTCCTTTCGTGGGTTGGCTTAG
127 CGCCTGCACGCTCGTTTTATGGGTTGGCTTAG
*
16349713 GCATACGGGGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16349741 ATATGGAGTT
Statistics
Matches: 759, Mismatches: 195, Indels: 46
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.00
157 104 0.14
158 400 0.53
159 221 0.29
160 30 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGATAG
CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
TGCACGCTCGTTTTATGGGTTGGCTTAG
Found at i:16349187 original size:316 final size:318
Alignment explanation
Indices: 16348605--16349740 Score: 1371
Period size: 316 Copynumber: 3.6 Consensus size: 318
16348595 CCCAGTCTAA
* * ** * *
16348605 GCATATGGAGTTCATTC-CCAGTCTAAGATCAGATTGGACCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCTCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
* * * * * * *
16348669 AACACGCAGGGGGGACCGAGTCGATCTCTGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTGC
66 AGCACGCAGGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
* * * *
16348734 CCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCC-GTCG
131 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
16348798 GACCGAGGGTTGTGGCA-CTAGGACCGGTAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTG
196 GATCGAGGGTTGTGGTAGC-GGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
* * * **
16348862 CGTATTATGCCTCTCCGACCGGCTCAGCACCTGCACGCTCGTTGAATGGGTTGACTTAT
260 CGCATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCATTTTATGGGTTGACTTAT
* * *
16348921 GCATACGGAGTTCATTCTC-AGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCTCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
* * *
16348985 AGCACGTAAGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCGC
66 AGCACGCAGGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
* *
16349050 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
131 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
*** *
16349115 GATCGAGGGTTGTGGTAGCGGGACCAACAGCACGCAGAGGGGGACCGGGTCGAT-CCCGGCTTGT
196 GATCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGC
* * * * *
16349179 GCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACACTCATTTTGTGGGTTGACTTAT
261 GCATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCATTTTATGGGTTGACTTAT
* * * *
16349237 GCATACGGAGTTCATT-TCTAGTCTAAGATCAAACCGGACTGAGGGTTGC-AGCAGCAGGATCGA
1 GCATACGGAGTTCATTCTCTAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCAAGATCGA
* * * ** * * * *
16349300 TAGCACGCAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTG
65 CAGCACGCAGGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
* * * *
16349365 TTCTGCACG-CCGATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAG
130 -CCCGCACGCCCG-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
16349429 CCGGATCGAGGGTTGTGGTAGCGGGATCGGTAG-ATGCAGAGGGGGACCGGGCCAATCCCCGGCT
193 CCGGATCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCT
* * * * *
16349493 AGCGCATTATACCTCTTCGATCGGCTCAGCGCCTGCACGCTCATTTTATGGGTTG-CTTAG
258 TGCGCATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCATTTTATGGGTTGACTTAT
* ** * * *
16349553 GCATACAGAGTTCATTC-CTAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAAGATCGAT
1 GCATACGGAGTTCATTCTCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
* * * * * * *
16349617 AGCACACAGGTGAGGGATCGGGTCGATCCCTAGCTTACGCTTTCTACCTCTCCTACCGGCTGAAC
66 AGCACGCAGG-G-GGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
16349682 GCCCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATACGGG-GTTCATTCCATGTCTAAGC
129 GCCCGCACGC-CCGTTTCGTGGGTTGGCTTAGGCATA-GGGAGTTCATTCCATGTCTAAGC
16349741 ATATGGAGTT
Statistics
Matches: 699, Mismatches: 106, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
315 3 0.00
316 416 0.60
317 233 0.33
318 45 0.06
319 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (318 bp):
GCATACGGAGTTCATTCTCTAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAC
AGCACGCAGGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GATCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGC
GCATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCATTTTATGGGTTGACTTAT
Found at i:16349751 original size:26 final size:26
Alignment explanation
Indices: 16349713--16349765 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16349703 GTTGGCTTAG
*
16349713 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16349739 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16349765 G
1 G
16349766 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16349962 original size:26 final size:26
Alignment explanation
Indices: 16349926--16349976 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16349916 TGACATAGGA
16349926 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16349952 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16349977 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16350429 original size:158 final size:158
Alignment explanation
Indices: 16349950--16351083 Score: 959
Period size: 158 Copynumber: 7.2 Consensus size: 158
16349940 CCCAGTCTAA
* * * * * *
16349950 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
16350015 GCATGCAGAGGGGACCGACCCGATCTCCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAGTGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * **
16350080 CGCATGCCCGTTTTATGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
16350108 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTAG-TCGGATCAAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTTCCA-GTCTAAGATC-AGACCAGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * ** **
16350171 CAGCACGCAGAGGGGGATCG-GACCGATCCCTGACTTGGGCATTATGCCTCTTCTG-CCACCTCC
64 CAGCACGCAG-GGGGGACCGAG-CCGATCCCCGACTTGCGCATTCTGCCTC-TCCGACCGGCTGA
* * *
16350234 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16350267 GCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGATC-GAGGGTTGTGGCAGCAGGATCGAC
** * * * * *
16350331 AGCACGCAGGGGGGATTGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACTGGCTGACCGT
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
16350396 CTGCACTCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
16350425 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTATGGCAGCGGGATCGG
1 GCATACGGAGTTCATTTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
16350488 CAGCACGCAGAGGGGGACCGAGCCTATCCCCGACTAGCGCATTATACCTCTTCGGCCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
16350553 ACCTGCACGCTCGTTTCGTGGGTT-GCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
16350583 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
16350648 GCACGCA-GGGGCACCGAGCAGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGACTGAACAC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGG-CTGAGCGC
* * *
16350712 CCGTACACCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
16350741 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTAG-CCGGATCGATGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTTCCA-GTCTAAGATC-AGACCAGATCGAGGGTTGTGGCAGCAGGATC-G
* * * ** * * * * * ** *
16350803 ATAGCACACAAAGGCAGACTGGGCCGATCCCCGGCTTGCGCA-TATGCCTCTTCGGTCGGCTCAG
63 ACAGCACGC-AGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * * * *
16350867 TGCCTGCACACTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16350899 GCATAC-GACGTTCA-TTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGA-GTTCATTTCC-AGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
16350962 TAGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCG
64 CAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
16351027 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16351057 GCATACGGAGTTGA-TTCCATGTCTAAG
1 GCATACGGAGTTCATTTCCA-GTCTAAG
16351084 CATACGAAGT
Statistics
Matches: 759, Mismatches: 187, Indels: 60
0.75 0.19 0.06
Matches are distributed among these distances:
156 37 0.05
157 72 0.09
158 421 0.55
159 200 0.26
160 29 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16350532 original size:317 final size:315
Alignment explanation
Indices: 16349950--16351084 Score: 1425
Period size: 316 Copynumber: 3.6 Consensus size: 315
16349940 CCCAGTCTAA
* *
16349950 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
16350015 GCATGCAGAGGGGACCGACCCGATCTCCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAGTGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
** *
16350080 CGCA-TGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
131 CGCACT-CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
* * * *
16350144 GATCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGACCGATCCCTGACTTGG
195 GATCGAGGGTTGTGGCAGCGGGA-CGACAGCACGCAGAGGGGGACCGG-CCGATCCCCGACTTGC
* ** * *
16350209 GCATTATGCCTCTTCTGCCACCTCCGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * * *
16350267 GCATACGGAGTTCATTTCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
** * * * * *
16350332 GCACGCAGGGGGGATTGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACTGGCTGACCGTC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
16350397 TGCACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
* * * *
16350462 ATCGAGGGTTATGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGCCTATCCCCGACTAGCG
196 ATCGAGGGTTGTGGCAGCGGGA-CGACAGCACGCAGAGGGGGACCG-GCCGATCCCCGACTTGCG
* *
16350527 CATTATACCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTG-CTTAG
259 CATTATGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAT
*
16350583 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
16350648 GCACGCA-GGGGCACCGAGCAGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGACTGAACAC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGG-CTGAGCGC
* *
16350712 CCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
130 CCGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
* * * * ** * *
16350777 GATCGATGGTTGTGGCAGCGGGACTGATAGCACACAAAGGCAGACTGGGCCGATCCCCGGCTTGC
195 GATCGAGGGTTGTGGCAGCGGGAC-GACAGCACGCAGAGGGGGAC-CGGCCGATCCCCGACTTGC
* ** *
16350842 GCA-TATGCCTCTTCGGTCGGCTCAGTGCCTGCACACTCGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAT
* * * ** *
16350899 GCATAC-GACGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGGATCGAT
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
16350963 AGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * * *
16351028 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGC
130 CCGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16351085 ATACGAAGTT
Statistics
Matches: 702, Mismatches: 108, Indels: 17
0.85 0.13 0.02
Matches are distributed among these distances:
315 84 0.12
316 309 0.44
317 307 0.44
318 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
ATCGAGGGTTGTGGCAGCGGGACGACAGCACGCAGAGGGGGACCGGCCGATCCCCGACTTGCGCA
TTATGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:16351094 original size:26 final size:26
Alignment explanation
Indices: 16351057--16351109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16351047 GTTGGCTTAG
* *
16351057 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16351083 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16351109 G
1 G
16351110 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16351791 original size:26 final size:26
Alignment explanation
Indices: 16351755--16351805 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16351745 TGACTTAGGT
*
16351755 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACAAAGTTCATCCCCAGTCTAAGC
*
16351781 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATCCCCAGTCTAAG
16351806 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAAGC
Found at i:16353109 original size:158 final size:156
Alignment explanation
Indices: 16352631--16353118 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 156
16352621 ATACAAAGTC
** * *
16352631 CATTCCCAGTCTAAGATCGGA-TCGTACCGAGGGTTGCGGGAGCAGGATGAGCAGCACGCAGGGG
1 CATTCCCAGTCTAAGATCAAACT-GAACCGAGGGTTGCGGCAGCAGGATGAGCA-CACGCAGGGG
* * * * * * * *
16352695 GGACTGGGTCAATCCCTGACTTGCGCATTCTGCCTCCCCGGTCGGTTGAGCACCCACACGCCCGT
64 GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGCTCGT
*
16352760 TT-GATGGGTTGGCTTAGGCATAGGGAGTT
128 TTCG-TGGGTTGGCTTAGGCATACGGAGTT
** * * * * * * *
16352789 CATT-CCATGTCTAAGCCCTAGC-CAGACCGAGGGTTGTGGCAGCGGGACTGGTAGCACAC-AAA
1 CATTCCCA-GTCTAAGATCAAACTGA-ACCGAGGGTTGCGGCAGCAGGA-T-G-AGCACACGCAG
* * * * * * * * *
16352851 GGGGGA-CGGGCCGATTCCCGGCTTGCGCATTATGCCTTTTCGTCGGCTCAGCGCCCGCATGGTC
61 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGCTC
* * * *
16352915 GTTTCATGGGTTGACTTATGCATACGAAGTT
126 GTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * *
16352946 CATTCCCAGTCTAAGATCAAACTGAACTGAGGGTTGCAGTAGCAGGATCGA-CATCACGCAGGGG
1 CATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGCGGCAGCAGGAT-GAGCA-CACGCAGGGG
* *
16353010 GGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGT
64 GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGCTCGT
*
16353075 TTCGTGGGTTGGCTTAGGCACACGGAGTT
128 TTCGTGGGTTGGCTTAGGCATACGGAGTT
*
16353104 CATTCCAAGTCTAAG
1 CATTCCCAGTCTAAG
16353119 CATACAGAGT
Statistics
Matches: 253, Mismatches: 64, Indels: 26
0.74 0.19 0.08
Matches are distributed among these distances:
154 2 0.01
155 4 0.02
156 9 0.04
157 105 0.42
158 117 0.46
159 8 0.03
160 4 0.02
161 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
CATTCCCAGTCTAAGATCAAACTGAACCGAGGGTTGCGGCAGCAGGATGAGCACACGCAGGGGGG
ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATACGGAGTT
Found at i:16354836 original size:26 final size:26
Alignment explanation
Indices: 16354787--16354839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354777 GTTGACTTAG
*
16354787 GCATAAGGAGTTCATCCCTGGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
*
16354813 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATAAGGAGTTCA-TCCCTAGTCTAA
16354839 G
1 G
16354840 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCTAGTCTAA
Found at i:16355173 original size:159 final size:157
Alignment explanation
Indices: 16354814--16355220 Score: 433
Period size: 159 Copynumber: 2.6 Consensus size: 157
16354804 CTGGTCTAAG
* * *
16354814 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCCAGATCGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTACGGCAGCAAGATCGGCAG
** * * * *
16354879 CACGCAGGGGGGATCAGG-CGCATCCTCGGCTTGCACATTCTGCCTCTCCGATCTGCTGAGCGCC
65 CACGCAGGGGGGATTGGGCCG-ATCCTCGGCTTGCACATTATGCCTCTCCGATCGGCTCAACGCC
* * *
16354943 CGTACGCCCGTTTCATGGGTTGGCTTAGG
129 CGTACGCCCATTTCATGGGTTGACTTAGA
* ** * * ** *
16354972 CATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CAGGACCGAGGGTTATGGCAGCGGGACCGGC
1 CATACGGAGTTCATTCCCA-GTCTAAGATC-AGAC-GGATCGAGGGTTACGGCAGCAAGATCGGC
* * *
16355035 AGCACGCAGAGGGGGATTGGGCCGATCCTCGGCTTGCTCATTATGCCTCTCCGATCGGTTCAATG
63 AGCACGCAG-GGGGGATTGGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGATCGGCTCAACG
* * * ** *
16355100 TCCGTATGCTCATTTTGTGGGTTGACTTCGA
127 CCCGTACGCCCATTTCATGGGTTGACTTAGA
* *
16355131 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAAGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTACGGCAGCAAGATCGGCAG
* *
16355196 CACGTAGGGGGGATTGGGCCAATCC
65 CACGCAGGGGGGATTGGGCCGATCC
16355221 CCGACTTATG
Statistics
Matches: 201, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 72 0.36
159 119 0.59
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTACGGCAGCAAGATCGGCAGC
ACGCAGGGGGGATTGGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGATCGGCTCAACGCCCG
TACGCCCATTTCATGGGTTGACTTAGA
Found at i:16355317 original size:26 final size:26
Alignment explanation
Indices: 16355287--16355339 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16355277 GTTGGCTTAG
16355287 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
16355313 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16355339 G
1 G
16355340 ATCAGACTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16355496 original size:184 final size:183
Alignment explanation
Indices: 16355131--16355498 Score: 441
Period size: 183 Copynumber: 2.0 Consensus size: 183
16355121 TTGACTTCGA
* * * *
16355131 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAAGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGCACCAAGGGTTACAGCAGCAAGATCGACAG
*** * * * *
16355196 CACGTAGGGGGGATTGGGCCAATCCCCGACTTATGCATTCTGCCCTTCGACCGATTGAGCACCCA
66 CACGTAGGGGGGATCAAGCCAATCCCCGACTTACGCACTCTGCCCTTCCACCGACTGAGCACCCA
* *
16355261 TACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
131 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * * * *
16355314 CATACGGAGTTTATTCCCAGTCTAAGATCAGA-CTGCACCAAGGGTTGCAGCAGTAGGATCGGCA
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GCACCAAGGGTTACAGCAGCAAGATCGACA
* * * * **
16355378 GCACGTAGGGGGGATCAAGCCGATCCCTGACTTACGCACTCTGCCTTTCCAGCTGACTGAGTGCC
65 GCACGTAGGGGGGATCAAGCCAATCCCCGACTTACGCACTCTGCCCTTCCA-CCGACTGAGCACC
* * * * *
16355443 CGCATGCTCGTTTCATGGGTTGGGTTAGGCATACAGAGTTTATTCCGTGTCTAAG
129 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
16355498 C
1 C
16355499 CCCAGTCAAA
Statistics
Matches: 153, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
182 1 0.01
183 94 0.61
184 58 0.38
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (183 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGCACCAAGGGTTACAGCAGCAAGATCGACAG
CACGTAGGGGGGATCAAGCCAATCCCCGACTTACGCACTCTGCCCTTCCACCGACTGAGCACCCA
CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
Found at i:16356149 original size:117 final size:117
Alignment explanation
Indices: 16355934--16356151 Score: 267
Period size: 117 Copynumber: 1.9 Consensus size: 117
16355924 CGATCCCCGG
* * * * * *
16355934 CTTGCACATTATGCCTCTCTGGCTGGCTCAGTACCCGCATGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCACATTATGCCTCTCCGGATGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGC
* *
16355999 ATACGGAGTTCATTTCCTATCTCAGATCAAACTAGATCAAGCCAATCCCCAT
66 ATACGGAGTTCATTTCCTATCTAAGACCAAACTAGATCAAGCCAATCCCCAT
* * * * *
16356051 CTTGCACATTCTGCCTCTCCGGATGGCTGAGCACCCTCACGCCCATTTTGTGGGTTGGCTTAGGC
1 CTTGCACATTATGCCTCTCCGGATGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGC
* * * *
16356116 ATAGGGAGTTCA-TTCCATGTCTAAGCCCCAACTAGA
66 ATACGGAGTTCATTTCC-TATCTAAGACCAAACTAGA
16356152 CTGAGGGTTG
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
116 4 0.05
117 79 0.95
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (117 bp):
CTTGCACATTATGCCTCTCCGGATGGCTCAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTTCCTATCTAAGACCAAACTAGATCAAGCCAATCCCCAT
Found at i:16356323 original size:26 final size:26
Alignment explanation
Indices: 16356287--16356337 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16356277 TTGACTTAGG
16356287 CATACGGAGTTC-TTCCCCAGTCTAAC
1 CATACGGAGTTCATT-CCCAGTCTAAC
*
16356313 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16356338 GATCGAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16356623 original size:159 final size:158
Alignment explanation
Indices: 16356346--16356650 Score: 351
Period size: 159 Copynumber: 1.9 Consensus size: 158
16356336 AAGATCGAAT
* * * * *
16356346 CGGATCGAGGGTTGTGACAGCAGGATCGATAGCACGCAGGGGGGGCCGGGCCGATCCCCGGTTTG
1 CGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTG
* * * ** * ** * *
16356411 TGCATTCTACCTCTCTGGCTGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGATTAGGCATAG
66 CGCATTCTACCTCTCTCGATAACTGAGCACCCACACACCCATTTCATGGGTTGGATTAGGCATAC
*
16356476 GGAGTTCATTCCATGTTTAAGCCCCAGC
131 GAAGTTCATTCCATGTTTAAGCCCCAGC
* * * * *
16356504 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCTCGGGCTT
1 CGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTT
** * *
16356569 GCGCATTCTACCTCT-TCGATCAACTGAGCACCCACACATTCATTTCGTGGGTTGGCTTAGGCAT
65 GCGCATTCTACCTCTCTCGAT-AACTGAGCACCCACACACCCATTTCATGGGTTGGATTAGGCAT
*
16356633 ACGAAGTTCATTCTATGT
129 ACGAAGTTCATTCCATGT
16356651 CTACGCATAC
Statistics
Matches: 119, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
158 38 0.32
159 81 0.68
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTG
CGCATTCTACCTCTCTCGATAACTGAGCACCCACACACCCATTTCATGGGTTGGATTAGGCATAC
GAAGTTCATTCCATGTTTAAGCCCCAGC
Found at i:16357573 original size:156 final size:157
Alignment explanation
Indices: 16357280--16357611 Score: 389
Period size: 156 Copynumber: 2.1 Consensus size: 157
16357270 CCCAGTCTAA
* * * * *** * *
16357280 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAGGGTTGTGGTAGTAGGATCGGCA
1 GCATACA-AGTTCATTCCCAGTCAAAGATCAGACTGAACCAAGGGTTACAGTAGCAGGATCGACA
* * * *
16357345 GCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGAGCGACTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCGAGCGACTGAGCGCC
* *
16357410 TGTATGCTCGTTCCGTGGGTTGACTTAG
130 CGCATGCTCGTTCCGTGGGTTGACTTAG
* *
16357438 GCATACAAGTTCATTCCCAGTCAAAGAT-AGATTGAACCGAGGGTTACAGTAGCAGGATCGACAG
1 GCATACAAGTTCATTCCCAGTCAAAGATCAGACTGAACCAAGGGTTACAGTAGCAGGATCGACAG
* * * * * *
16357502 TACGCAGGGGGGATCGAGTCGGTTCCC-GACTTACGCATTCTACCTCTCCGATCGACTGAGCTCC
66 CACGCAGGGGGGATCG-GGCCGATCCCTGACTTACGCATTCTACCTCTCCGAGCGACTGAGCGCC
* *
16357566 CGCATGCTCGTTTCGTGGGTTGGCTTAG
130 CGCATGCTCGTTCCGTGGGTTGACTTAG
*
16357594 GCATACGGAGTTCATTCC
1 GCATAC-AAGTTCATTCC
16357612 ATGTCTAAGC
Statistics
Matches: 146, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
156 102 0.70
157 37 0.25
158 7 0.05
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACAAGTTCATTCCCAGTCAAAGATCAGACTGAACCAAGGGTTACAGTAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCGAGCGACTGAGCGCCC
GCATGCTCGTTCCGTGGGTTGACTTAG
Found at i:16357623 original size:26 final size:26
Alignment explanation
Indices: 16357594--16357646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16357584 GTTGGCTTAG
*
16357594 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16357620 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16357646 G
1 G
16357647 ATCACATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16357852 original size:27 final size:26
Alignment explanation
Indices: 16357801--16357855 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
16357791 GGGTTGACTT
*
16357801 AGCATACAGAGTTCATCCCTAGTCTA
1 AGCATACAGAGTTCATCCATAGTCTA
16357827 AGCATACAGAAGTTCATTCCAT-GTCTA
1 AGCATACAG-AGTTCA-TCCATAGTCTA
16357854 AG
1 AG
16357856 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 9 0.35
27 13 0.50
28 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCATAGTCTA
Found at i:16358567 original size:159 final size:159
Alignment explanation
Indices: 16358259--16358567 Score: 336
Period size: 159 Copynumber: 1.9 Consensus size: 159
16358249 GCATGCAGGG
* * * * * * * *
16358259 GGATCGGGCTGGTCCCCGGCTTATGCATTCTGCCTCTCTGATTGGTTGAACGCCAGCACGCCTGT
1 GGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTGACTGGCTCAACGCCAGAACGCCTGT
** ** *
16358324 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCAAACCGAGGGTTA
66 TTCATGGGTTAACTTAGGCATACAGAGTTCATTCTATGTCTAAGCACCAGCCAAACCGAGGGTTA
* * **
16358389 TGACAGCGGGACCGGCAGCATGTAGAGAA
131 CGACAGCAGGACCAACAGCATGTAGAGAA
* * * *
16358418 GGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGACTGGCTCAACGCCTGAATG-CTCG
1 GGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTGACTGGCTCAACGCCAGAACGCCT-G
* *
16358482 TTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGACCAGACCGAGGG
65 TTTCATGGGTTAACTTAGGCATACAGAGTTCATT-CTATGTCTAAGCACCAG-CCAAACCGAGGG
* * *
16358545 TTACGATAGTAGGATCAACAGCA
128 TTACGACAGCAGGACCAACAGCA
16358568 CGCAGGGGGG
Statistics
Matches: 121, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
158 5 0.04
159 113 0.93
160 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (159 bp):
GGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCTGACTGGCTCAACGCCAGAACGCCTGT
TTCATGGGTTAACTTAGGCATACAGAGTTCATTCTATGTCTAAGCACCAGCCAAACCGAGGGTTA
CGACAGCAGGACCAACAGCATGTAGAGAA
Found at i:16358694 original size:26 final size:26
Alignment explanation
Indices: 16358658--16358710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16358648 GTTGGCTTAG
*
16358658 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
16358684 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16358710 G
1 G
16358711 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16359054 original size:25 final size:26
Alignment explanation
Indices: 16359025--16359076 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16359015 GTTGACTTAG
*
16359025 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16359050 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16359076 G
1 G
16359077 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16359360 original size:366 final size:363
Alignment explanation
Indices: 16358637--16359611 Score: 1220
Period size: 366 Copynumber: 2.7 Consensus size: 363
16358627 GCCTGCAAGG
* * *
16358637 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC-
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCT
* ** * * * * * * *
16358701 CAAGTCTAAGATCAGACTAGACCGAGGATTGCAGCAGCAGGATTGGCAGCACGTAATGGGGGATC
65 C-AGTCTAAGATCAGACTGGGTCGAGGGTTGCGGTAGCAGGATCGACAGCAC--AAGGGGGGACC
* ** * * * ** * * * *
16358766 GGGCTGATCCCCAGCTTGTGCATTCTACCTCT-TCGACCGGTGAGTGCCCGCACGCTCGTTTCAT
127 AGGC-GATCCCTGGCTTGCGCATTCTGCCTCTCT-GGCCACTGAGCGCCCGCACGCCCATTTCGT
16358830 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGATA
190 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGATA
** * *
16358895 GCAGGATCGGTAGTGGATTGGCAGGACGCAGAGGGGGAACGAGTTGATCCCCAGCTTGCACATTA
255 GCAGGATCGACAGTGGATTGGCAGGACGCAGAGGGGGAACGAGCTAATCCCCAGCTTGCACATTA
* * *
16358960 TGTCTCTTCGATCGGCCTCTCCAGTCGGCTGAGCGCCCACATGC
320 TGCCTCTTCGACCGGCCTCTCCAGTCGGCTGAGCGCCCACACGC
* *
16359004 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCTC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCTC
*
16359069 AGTCTAAGATCGGACTGGGTCGAGGGTTG-GGTAGCAGGATCGACAGCACACAGGGGGGACCAGG
66 AGTCTAAGATCAGACTGGGTCGAGGGTTGCGGTAGCAGGATCGACAGCACA-AGGGGGGACCAGG
16359133 CGAATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCAACTGAGCGCCCGCACGCCCATTTCGTGGG
130 CG-ATCCCTGGCTTGCGCATTCTGCCTCTCTGGCC-ACTGAGCGCCCGCACGCCCATTTCGTGGG
* *
16359198 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCA
193 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGATAGCA
* * *
16359263 GGATCGACAGTGGGATTGGCAGGACGCGGAGTGGGAATGAGCTAATCCCCAGCTTGCACATTATG
258 GGATCGACAGT-GGATTGGCAGGACGCAGAGGGGGAACGAGCTAATCCCCAGCTTGCACATTATG
* * **
16359328 CCTCTTTGACCGGCCTCTCCAGTCGGCTGAGCGTCCGTACGC
322 CCTCTTCGACCGGCCTCTCCAGTCGGCTGAGCGCCCACACGC
* *
16359370 TCATTTCGTGGGTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATACGGAGTTCATTCT
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCT
* ** ** ** *
16359435 CAGTCTAAGATCAGACCGGGTCGAGGGTTGCGGTAGCAAAATCGATGGCATGTAGGGGGGACTAG
65 CAGTCTAAGATCAGACTGGGTCGAGGGTTGCGGTAGCAGGATCGACAGCA-CAAGGGGGGACCAG
* ** * * *
16359500 GCCTATCCCTGGCTTGCATATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACGCCCATTTCGT-G
129 G-CGATCCCTGGCTTGCGCATTCTGCCTCTCTGG-CCACTGAGCGCCCGCACGCCCATTTCGTGG
* ** *
16359564 GTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
192 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
16359612 CCAAGTGTTG
Statistics
Matches: 529, Mismatches: 68, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
363 2 0.00
364 36 0.07
365 112 0.21
366 161 0.30
367 137 0.26
368 79 0.15
369 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (363 bp):
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCTC
AGTCTAAGATCAGACTGGGTCGAGGGTTGCGGTAGCAGGATCGACAGCACAAGGGGGGACCAGGC
GATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCACTGAGCGCCCGCACGCCCATTTCGTGGGTTG
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGATAGCAGGA
TCGACAGTGGATTGGCAGGACGCAGAGGGGGAACGAGCTAATCCCCAGCTTGCACATTATGCCTC
TTCGACCGGCCTCTCCAGTCGGCTGAGCGCCCACACGC
Found at i:16359431 original size:26 final size:26
Alignment explanation
Indices: 16359391--16359443 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16359381 GTTGACTTAG
16359391 GCATACAGAGGTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
* * * *
16359417 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
16359443 G
1 G
16359444 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:16359968 original size:26 final size:26
Alignment explanation
Indices: 16359916--16359968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16359906 GTTGACTTAG
*
16359916 GCATACGAAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
16359942 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
16359968 G
1 G
16359969 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:16360164 original size:26 final size:26
Alignment explanation
Indices: 16360112--16360164 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16360102 GTTGGCTTAG
*
16360112 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16360138 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
16360164 G
1 G
16360165 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16366248 original size:26 final size:26
Alignment explanation
Indices: 16366208--16366286 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
16366198 GTTGACTTAG
16366208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16366234 GCATACGGAGCTCATCCCCATTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16366260 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16366286 G
1 G
16366287 ATCAGATCGA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16366565 original size:159 final size:159
Alignment explanation
Indices: 16366324--16367077 Score: 543
Period size: 159 Copynumber: 4.8 Consensus size: 159
16366314 TAGGATCGGT
* * * * * * * * **
16366324 AGCACACAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTG
* * *
16366388 CCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGT
66 CCCGCACGCT-CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGT
*
16366452 CGGATCGAGGGTTGTGGCAGCGGGACTAGAC
130 CGGATCGAGGGTTGTGGCAGCGGGACT-GGC
* * *
16366483 A-CATGCAGAGGGGGACCGGGTCGATCCTCGACTTACGCACTATGCCTCTTCGG-CTGGCTCAGT
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTC-GGCTCAGT
* * * * * * *
16366546 GCCTGGATGCTCGTTTCATGGGTTGACTTATGCATACGGATTTCATTCCCA-GTCTAAGA--TCA
65 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAA-ACCCCA
* * ** *
16366608 GACTGGATCGAGGGTTGCGATAGCAGGA-TCGGC
128 GTC-GGATCGAGGGTTGTGGCAGCGGGACT-GGC
* * * * * * * *
16366641 AGCACGCAG-GTGGGACTGGGTCGATCC-CTGGCTTGCGCATTCTGTCTCTCCGGTCGACTAAGT
1 AGCACGCAGAGGGGGACCGGGTCGATCCTC-GACTTGCGCATTATGCCTCTTCGGTCGGCTCAGT
** * * * *
16366704 GCCCGCACGC-CTATTTCGCGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 GCCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAG
* * *
16366768 TCGGACCAAGGGTTGTGGCAACGGGACTGGC
129 TCGGATCGAGGGTTGTGGCAGCGGGACTGGC
* * * **
16366799 AGCACG-ATGAGGGGGACCGGGCCGATCCTCAACTTGCGCATTATGCATCTTCAATCGGCTCAGT
1 AGCACGCA-GAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGT
* * * * *
16366863 GCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGATTTCATTCCCA-GTTTAAGA--TCA
65 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAA-ACCCCA
* * * * ** *
16366925 GACCAGACCAAGGGTTGTGGCAGCAAGA-TCGAC
128 G-TCGGATCGAGGGTTGTGGCAGCGGGACT-GGC
* * * * * * * * * * * *
16366958 AGGACGTAG-GGGGCATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCG
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTG
* * * * *
16367022 CTCGCACACTCATTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAA
66 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
16367078 GCATACGGGG
Statistics
Matches: 463, Mismatches: 108, Indels: 49
0.75 0.17 0.08
Matches are distributed among these distances:
157 9 0.02
158 212 0.46
159 231 0.50
160 11 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGTG
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGTC
GGATCGAGGGTTGTGGCAGCGGGACTGGC
Found at i:16366692 original size:317 final size:316
Alignment explanation
Indices: 16366270--16367077 Score: 1009
Period size: 317 Copynumber: 2.5 Consensus size: 316
16366260 GCATGCAGAG
* * * * *
16366270 TTCATTCCCAGTCTAAGATCAGA-TCGAATTGAGGGTTGCGACAGTAGGATCGGTAGCACACAGG
1 TTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCA-G
* *
16366334 GGGGA-TCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGTC
64 GGGGACTCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG-C
* * * *
16366398 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGATCGAGGG
128 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGACCAAGGG
* * * *
16366463 TTGTGGCAGCGGGACTAGACA-CATGCA-GAGGGGGACCGGGTCGATCCTCGACTTACGCACTAT
193 TTGTGGCAACGGGACT-GACAGCACG-ATGAGGGGGACCGGGCCGATCCTCAACTTACGCACTAT
* ** * * * *
16366526 GCCTCTTC-GGCTGGCTCAGTGCCTGGATGCTCGTTTCATGGGTTGACTTATGCATACGGAT
256 GCATCTTCAATC-GGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAT
*
16366587 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGT
1 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGG-
* * * * *
16366652 GGGACT-GGGTCGATCCCTGGCTTGCGCATTCTGTCTCTCCGGTCGACTAAGTGCCCGCACGCCT
65 GGGACTCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCC-
* * *
16366716 ATTTCGCGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGT
129 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGACCAAGGGT
* * *
16366781 TGTGGCAACGGGACTGGCAGCACGATGAGGGGGACCGGGCCGATCCTCAACTTGCGCATTATGCA
194 TGTGGCAACGGGACTGACAGCACGATGAGGGGGACCGGGCCGATCCTCAACTTACGCACTATGCA
*
16366846 TCTTCAATCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAT
259 TCTTCAATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAT
* ** * * * * * * * *
16366904 TTCATTCCCAGTTTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAGATCGACAGGACGTAGGG
1 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGG
* * * *
16366969 GG-CATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCTCGCACACTC
66 GGAC-TCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC-C
* *
16367033 ATTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAA
129 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
16367078 GCATACGGGG
Statistics
Matches: 421, Mismatches: 60, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
315 1 0.00
316 12 0.03
317 404 0.96
318 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGG
GGACTCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCAT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGGACCAAGGGTTG
TGGCAACGGGACTGACAGCACGATGAGGGGGACCGGGCCGATCCTCAACTTACGCACTATGCATC
TTCAATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAT
Found at i:16367103 original size:26 final size:26
Alignment explanation
Indices: 16367046--16367104 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
16367036 TCGTGGGTTG
*
16367046 GCCTAGGCATACGGAGTTCATTCCAT
1 GCCTAAGCATACGGAGTTCATTCCAT
* *
16367072 GTCTAAGCATACGGGGTTCATTCCCA-
1 GCCTAAGCATACGGAGTTCATT-CCAT
16367098 GCCTAAG
1 GCCTAAG
16367105 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (26 bp):
GCCTAAGCATACGGAGTTCATTCCAT
Found at i:16367196 original size:11 final size:11
Alignment explanation
Indices: 16367182--16367206 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16367172 ACCATCACCA
16367182 GAGCATCGTCG
1 GAGCATCGTCG
16367193 GAGCATCGTCG
1 GAGCATCGTCG
16367204 GAG
1 GAG
16367207 AGCCTGACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:16368376 original size:159 final size:160
Alignment explanation
Indices: 16368195--16368484 Score: 345
Period size: 159 Copynumber: 1.8 Consensus size: 160
16368185 TGTGGCAACG
* * * * * *
16368195 GGATCGACAGCACGTAGAGGGGGATCGGTCTGATCCCC-GACTTGCACATTATGCCTTTTCGATC
1 GGATCGACAGCACGAAGAGGGGGATCGGGCCGATCCCCAG-CTTGCACATTATGCCTCTCCGACC
* *
16368259 GGCTCAGCGCCCGCACGCTCGTTTCATGGG-TTGACTTATGCACACGGAGTTCATTCCCA-GTCT
65 GACTCAGCGCCCGCACGCTCGTTTCATGGGTTTGACTTAGGCACACGGAGTTCATT-CCATGTCT
16368322 AAGATCGGACCGGACCGAGGGTTACAACAGCA
129 AAGATCGGACCGGACCGAGGGTTACAACAGCA
* ** * * *
16368354 GGATCGACAGCACGCAAG-GGGGGATTGGGCCGATCCCCAGCTTGTGCATTCTTCCTCTCCGGCC
1 GGATCGACAGCACG-AAGAGGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACC
* * * * * *
16368418 GACTGAGTGCCCGCACTCTCGTTTCGTGGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GACTCAGCGCCCGCACGCTCGTTTCATGGGTTTGACTTAGGCACACGGAGTTCATTCCATGTCTA
16368483 AG
130 AG
16368485 CATACGGAGT
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
159 75 0.70
160 32 0.30
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GGATCGACAGCACGAAGAGGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCG
ACTCAGCGCCCGCACGCTCGTTTCATGGGTTTGACTTAGGCACACGGAGTTCATTCCATGTCTAA
GATCGGACCGGACCGAGGGTTACAACAGCA
Found at i:16369525 original size:158 final size:159
Alignment explanation
Indices: 16369218--16369545 Score: 394
Period size: 158 Copynumber: 2.1 Consensus size: 159
16369208 CCCCAGTCGG
* ** * *
16369218 ACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCG
1 ACCGAGGGTTGTGATAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACG
* *
16369283 CATTATGCCTATCCGGCTGTCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
66 CATTATGCATATCCGGCTGTCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
16369348 AGTTCATTCCCAATCTAAGATCAGACCAA
131 AGTTCATTCCCAATCTAAGATCAGACCAA
* * *
16369377 ACTGAGGGTTGTGATAGCAAGATCGACAGCACGCAG-GGGGTACCAGGCCGATCCCCGACTTACG
1 ACCGAGGGTTGTGATAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACG
* * * * * * *
16369441 CATTCTGCATCTCCGG-TCGAT-TGAGCACCCGTA-AGCTCGTTTCGTGTGTTGGCTTAGGCGTA
66 CATTATGCATATCCGGCT-G-TCTCAGCACCCGCACA-CTCGTTTCGTGGGTTGACTTAGGCATA
** * **
16369503 CGGAGTTCATTCTTAATTTAAGATTGGACCAA
128 CGGAGTTCATTCCCAATCTAAGATCAGACCAA
*
16369535 ACCGAAGGTTG
1 ACCGAGGGTTG
16369546 CGGCAACAGG
Statistics
Matches: 142, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 108 0.76
159 32 0.23
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
ACCGAGGGTTGTGATAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACG
CATTATGCATATCCGGCTGTCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAATCTAAGATCAGACCAA
Found at i:16369877 original size:26 final size:26
Alignment explanation
Indices: 16369840--16369892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16369830 GTTGACTTAG
* *
16369840 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
16369866 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16369892 G
1 G
16369893 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16370374 original size:26 final size:26
Alignment explanation
Indices: 16370338--16370390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16370328 GTTGGCTTAG
16370338 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16370364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16370390 G
1 G
16370391 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16377083 original size:26 final size:26
Alignment explanation
Indices: 16377053--16377105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16377043 GTTGACTTAG
16377053 GCATACCAAGTTCATCCCCAGTCTAA
1 GCATACCAAGTTCATCCCCAGTCTAA
* *
16377079 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACCAAGTTCATCCCCAGTCTAA
16377105 G
1 G
16377106 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACCAAGTTCATCCCCAGTCTAA
Found at i:16377420 original size:159 final size:158
Alignment explanation
Indices: 16377112--16377411 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 158
16377102 TAAGATTGGA
* *
16377112 CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCAGACTT
1 CCAGACTGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGAGGGGACCGGGCCGATCCCAGACTT
* * * * ** * *
16377177 GTGCATTCTGCCTCTTCGGCCGGTTGAGTGCCCACACGCCCATTTTGTGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATA
*
16377242 GGGAGTTCATTACATGTCTATGCCCCAG
131 CGGAGTTCATTACATGTCTATGCCCCAG
* * * *
16377270 CCAGACTGAGGGTTGTGGCAGC-GAGACCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGC
1 CCAGACTGAGGGTTGCGGCAGCAG-GACCGGCAGCACGCAG-AGGGGACCGGGCCGATCCCAGAC
* * * * * **
16377334 TTGCGCATTATGCCTCTTCGGTCTGCTCAACGCCCGCACGCTCATTTCGTGGGTTTACTTTTGCA
64 TTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCCCATTTCGTGGGTTGACTTAGGCA
16377399 TACGGAGTTCATT
129 TACGGAGTTCATT
16377412 CTCAGTCTAA
Statistics
Matches: 118, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 36 0.31
159 81 0.69
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
CCAGACTGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGAGGGGACCGGGCCGATCCCAGACTT
GCGCATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTACATGTCTATGCCCCAG
Found at i:16378593 original size:159 final size:158
Alignment explanation
Indices: 16378363--16378805 Score: 514
Period size: 159 Copynumber: 2.8 Consensus size: 158
16378353 TAGTAGGATT
* * * * * * *
16378363 GACAGCACGCATGGGGGACTGAGCCGATCCCCGACTTAG-GCATTCTGCCTCTCCGACCGGCTGA
1 GACAGCACACAGGGGGGACTGGGCCGATCCTCGGCTT-GCGCATTATGCCTCTCCGATCGGCTGA
* * * *
16378427 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGCACCA
** *
16378492 G-CCAGACCGAGAGTTGTGGCAGCTGGACC
129 GACCAGACCGAGAGTTGCAGCAGCAGGACC
* ** * * *
16378521 GGCAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCA
1 GACAGCACACAG-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGA
* * * * * *
16378586 GCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCTAGTCTAAG-ATCA
65 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT-GTCTAAGCACCA
* * *
16378650 GACCGGACCGAGGGTTGCAGCAGCAGGATC
129 GACCAGACCGAGAGTTGCAGCAGCAGGACC
* * * *
16378680 GACAGCACACAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTTTGCCTCTCCGGTCGGCTGAG
1 GACAGCACACAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAG
*
16378745 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCA
66 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCTGTCTAAGCA
16378806 TACGAAGTTC
Statistics
Matches: 237, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
158 109 0.46
159 128 0.54
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GACAGCACACAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTGTCTAAGCACCAGA
CCAGACCGAGAGTTGCAGCAGCAGGACC
Found at i:16378767 original size:158 final size:158
Alignment explanation
Indices: 16378302--16378803 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 158
16378292 CCCAGTCTAA
* * * ** * * * *
16378302 GCATATAGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGGTAGTAGGATTGACA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
16378367 GCACGCATGGGGGACTGAGCCGATCCCCGACTTAG-GCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCACGCAGGGGGGACTGGGCCGATCCTCGGCTT-GCGCATTATGCCTCTCCGATCGGCTGAGCGC
* *
16378431 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
16378460 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCAGACCGAGAGTTGTGGCAGCTGGACCGG
1 GCATATGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
16378523 CAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
64 CAGCACGCAG-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGC
* * * *
16378588 ACCCGCACGCTCATTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16378619 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
16378684 GCACACAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTTTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
*
16378749 CGTACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16378777 GCATACGGAGTTCATTCCCT-GTCTAAG
1 GCATATGGAGTTCATT-CCTAGTCTAAG
16378804 CATACGAAGT
Statistics
Matches: 279, Mismatches: 58, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 148 0.53
159 129 0.46
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16378806 original size:26 final size:26
Alignment explanation
Indices: 16378777--16378829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16378767 GTTGGCTTAG
* *
16378777 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16378803 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16378829 G
1 G
16378830 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16379853 original size:158 final size:157
Alignment explanation
Indices: 16379662--16380024 Score: 415
Period size: 158 Copynumber: 2.3 Consensus size: 157
16379652 CTGTAAGCTT
*
16379662 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACGGACCGAAGGTT
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACGGACC-AAGGTT
* * * *
16379727 AT-GGCAGTGGGACCGACAGCACGCAGAGGGAGACCGGGCCAATCCCCGACTTGCACATTATGCC
65 -TCGGCAGTAGGACCGACAGCACACAGAGGGAGACCAGGCCAATCCCCGACTTGCACATTATACC
* * * *
16379791 TCTTCGACCGGCTCAGCGCCTGCACGCTC
129 TCTCCGACCGACTCAGCGCCCGCACACTC
* * **** *
16379820 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATGGACCGGACCAAGGTT
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACGGACCAAGGTT
* * * * * ** * * *
16379884 TGCGGCAGTAGGATCGATAGCACATAGGGGGAGACCAGGCCGATCGTCGGCTTGCGCATTCTACC
65 T-CGGCAGTAGGACCGACAGCACACAGAGGGAGACCAGGCCAATCCCCGACTTGCACATTATACC
* *
16379949 TCTCCGACCGACTGAGCGCCCGTACACTC
129 TCTCCGACCGACTCAGCGCCCGCACACTC
*
16379978 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16380025 ATACGGAGTT
Statistics
Matches: 169, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.01
157 9 0.05
158 156 0.92
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACGGACCAAGGTTT
CGGCAGTAGGACCGACAGCACACAGAGGGAGACCAGGCCAATCCCCGACTTGCACATTATACCTC
TCCGACCGACTCAGCGCCCGCACACTC
Found at i:16380026 original size:26 final size:26
Alignment explanation
Indices: 16379997--16380049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16379987 GTTGGCTTAG
16379997 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16380023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16380049 G
1 G
16380050 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16381088 original size:159 final size:156
Alignment explanation
Indices: 16380773--16381269 Score: 504
Period size: 159 Copynumber: 3.1 Consensus size: 156
16380763 TCTAAGCATT
* * *
16380773 GGAGTTCATTCC-TAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
1 GGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGC-GGATCGACAGCAC
* * * * *
16380836 GTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCAG-CCGGCTGAGCGCCTGT
64 GTAGGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTACCTCT-CAGATCGGCTGAGC-CCTGC
* *
16380900 AAGCCCGTTTCGTGGGTTCGCTTAGGCATAG
127 AAGCTCGTTTCGTGGGTT-GCTTAGGCATAC
* * * *
16380931 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGAACTGGCAGCACG
1 GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCGGATC-GACAGCACG
* * * * *
16380995 TAGAGGGGGGTCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTAAGATCGGCTTAGCACCTGCA
65 TAG-GGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCAGATCGGCTGAGC-CCTGCA
* ** *
16381060 TGCTCGTTTTATGGGTTGACTTATGCATAC
128 AGCTCGTTTCGTGGGTTG-CTTAGGCATAC
* * * * **
16381090 GGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCAGTAGTAAGATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAG-CGGATCGACAGCAC
* * * *
16381153 GTAGGGGGGGCCGGGCCGATTCCCGGCTTGCGCATTCTACCTCTCCGAT-GGCTGAGCGCTCGCA
64 GTAGGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCAGATCGGCTGAGCCCT-GCA
* *
16381217 CGCTCGTTTCGTTGGTTGGCTTAGGCATAC
128 AGCTCGTTTCGTGGGTT-GCTTAGGCATAC
*
16381247 GGAGTTCATTCCATGTTTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
16381270 TACGGAGTTC
Statistics
Matches: 277, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
156 5 0.02
157 53 0.19
158 96 0.35
159 117 0.42
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGGCAGCGGATCGACAGCACGT
AGGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCAGATCGGCTGAGCCCTGCAAGC
TCGTTTCGTGGGTTGCTTAGGCATAC
Found at i:16381293 original size:26 final size:26
Alignment explanation
Indices: 16381241--16381293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16381231 GTTGGCTTAG
*
16381241 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16381267 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16381293 G
1 G
16381294 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16382070 original size:26 final size:26
Alignment explanation
Indices: 16382034--16382086 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16382024 GTTGGCTTAG
16382034 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16382060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16382086 G
1 G
16382087 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16382279 original size:26 final size:26
Alignment explanation
Indices: 16382243--16382295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16382233 GTTGACTTAG
16382243 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16382269 GCATAGGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16382295 G
1 G
16382296 ATATAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16383468 original size:26 final size:26
Alignment explanation
Indices: 16383439--16383491 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16383429 GTTGGCTTAG
*
16383439 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
16383465 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
16383491 G
1 G
16383492 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:16384454 original size:448 final size:448
Alignment explanation
Indices: 16383613--16384493 Score: 1406
Period size: 448 Copynumber: 2.0 Consensus size: 448
16383603 GGGTTCGAGG
**
16383613 GATTGAGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTTTTACTTGGCCCTTATAT
1 GATTGAGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
*
16383678 TGGCCCCCTATCCCTTATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAT
66 TGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAT
*
16383743 AGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
131 AAGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
16383808 TCTTCTCCACTTTGAGTTTTTAGGTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACC
196 TCTTCTCCACATCGAGTTTTTAGCTGAATGTTTTTGGGCATGCCAACAAAAATACAAGGATCACC
*
16383873 TCAACCAAATTTGGTGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
261 TCAACCAAATTTGGGGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
** * *
16383938 TTTGAAAATCGTGAAAAATAGAAAACGGTTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGGG
326 TTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGGG
* *
16384003 GACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGGAAATCGAGAGCAA
391 GACCACTGTACGAATTTACAAGCCACAAAAATGGCATTGGCATGGAAATCGAGAGCAA
* * *
16384061 GATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT-TCGATGGGTGCTGGTATTTGGCCCTTATA
1 GATTGAGGGGGCCGGGGGGTGTGCACACATGATGTGT-GATGGGTGCTGGTACTTGGCCCTTATA
* * * * *
16384125 TTGGTCCCCTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
65 TTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
* * *
16384190 TAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
130 TAAGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
16384255 ATCTTCTCCACATCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATTCAAGGATCAC
195 ATCTTCTCCACATCGAGTTTTTAGCTGAATGTTTTTGGGCATGCCAACAAAAATACAAGGATCAC
* * * *
16384320 CTCTACCAAATTTGGGGACAAAACT-CTTTCTAAAAAAATTTTAAAAAATTCTGAATCGTAAAAA
260 CTCAACCAAATTTGGGGACAAAA-TGCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
16384384 GTTTCAAAAATTATGAAAAATAGAAAACGGGTCGTCTTGTCGCGAAACTTCACATGAAGGCTTAG
324 GTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAG
16384449 GGGACCACTGTACGAATTTACAAGCCACAAAAATGGCATTGGCAT
389 GGGACCACTGTACGAATTTACAAGCCACAAAAATGGCATTGGCAT
16384494 CGACAGAAAT
Statistics
Matches: 395, Mismatches: 36, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
447 1 0.00
448 393 0.99
449 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (448 bp):
GATTGAGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAT
AAGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTCTCCACATCGAGTTTTTAGCTGAATGTTTTTGGGCATGCCAACAAAAATACAAGGATCACC
TCAACCAAATTTGGGGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGGG
GACCACTGTACGAATTTACAAGCCACAAAAATGGCATTGGCATGGAAATCGAGAGCAA
Found at i:16384829 original size:26 final size:26
Alignment explanation
Indices: 16384793--16384845 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16384783 GTTGGCTTAG
16384793 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16384819 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16384845 G
1 G
16384846 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16385518 original size:26 final size:26
Alignment explanation
Indices: 16385487--16385539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16385477 GTTGACTTAG
*
16385487 GCATACGTAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
16385513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16385539 G
1 G
16385540 ATCACACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16386163 original size:157 final size:156
Alignment explanation
Indices: 16385698--16386188 Score: 479
Period size: 157 Copynumber: 3.1 Consensus size: 156
16385688 CTCGGTCTAA
* * * **
16385698 GCATATGGAGTTAATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * *
16385762 AGCACGTAGGGAGGACCGGGTAGATCCCCGGCTTGTACATTCT-ACTCTTCGGCCGACTGAGCAC
65 AGCACGCAGGG-GGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
*
16385826 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
16385855 GCATAGGGAGTTCATT-CCATGTCTAAAACCTG-GCCGGATCGAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAACCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * *
16385917 GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAA
64 -CAGCACGC--AGGGGGACCGGGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* ** * *
16385982 CGCCCAAACGCTCGTTTCATGGGTTGACTTAG
125 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
16386014 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGAACCAAGGATTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
16386079 GCACGCAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCGGAGCACCT
66 GCACGCAGGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
* *
16386144 GCACGCTCGTTTCGCGGGTTGGCTTCG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
16386171 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16386189 ATGTTTAAGC
Statistics
Matches: 265, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 139 0.52
158 26 0.10
159 91 0.34
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16386223 original size:26 final size:26
Alignment explanation
Indices: 16386171--16386223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16386161 GTTGGCTTCG
* *
16386171 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
16386197 GCATACAGAGTTCATTCACA-GTCTAA
1 GCATACAGAGTTCATTC-CATGTCTAA
16386223 G
1 G
16386224 GTTGGCTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16387760 original size:157 final size:159
Alignment explanation
Indices: 16387414--16387776 Score: 380
Period size: 159 Copynumber: 2.3 Consensus size: 159
16387404 CCCGTACACC
* * * * *
16387414 CATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCAGACTGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCAGACTGAGGG
** ** ** *
16387479 TTGTGGCAGCGGGATTGGTAGCACGTAGAGGGGGACCGGGCCGATCCACGACTTGCACATTATGC
66 TTGCAGCAGCAAGATTGACAGCACGTAGAGGGGGACCAGGCCGATCCACGACTTGCACATTATGC
* * *
16387544 CTCTCCGATCAGCTCAGCGCCTGAACGCT
131 CTCTACGATCAGCTAAGCGACTGAACGCT
* * * * * *
16387573 TATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGT
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAG-CCAGACTGAGG
* * *
16387637 GTTGCAGTAGCAAGATTGACAGCATGTAG-GGGGGACCAGGCC-AGTCC-CTGACTTGCACATTC
65 GTTGCAGCAGCAAGATTGACAGCACGTAGAGGGGGACCAGGCCGA-TCCAC-GACTTGCACATTA
* *
16387699 TGCCTCTACGGTC-GACTAAGC-ACTGTACGCT
128 TGCCTCTACGATCAG-CTAAGCGACTGAACGCT
* *
16387730 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
16387777 TGTATGGAGT
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
156 3 0.02
157 49 0.29
158 46 0.27
159 70 0.42
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCAGACTGAGGG
TTGCAGCAGCAAGATTGACAGCACGTAGAGGGGGACCAGGCCGATCCACGACTTGCACATTATGC
CTCTACGATCAGCTAAGCGACTGAACGCT
Found at i:16387989 original size:184 final size:182
Alignment explanation
Indices: 16387593--16388004 Score: 502
Period size: 183 Copynumber: 2.2 Consensus size: 182
16387583 GTTGACATAG
* * * *
16387593 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGTGTTGCAGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG-GTTGCAGTAGCAAGATCGACA
* * *
16387658 GCATGTAGGGGGGACCAGGCCAGTCCCTGACTTGCACATTCTGCCTCTACGGTCGACTAAGCACT
65 GCATGCAGGGGGGACCAGGCCAGTCCCTGACTTACACATTCTGCCTCTACGGTCGACTAAGCACC
* *
16387723 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 GCACGCTCGTTTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAA
** * * * * *
16387776 GTGTATGGAGTTCATTCCCAGTATAAGATCGGTCCAGACCGAGGCTTGCAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG-TTGCAGTAGCAAGATCGACA
** * * * * * * *
16387841 GCATGCAGGGGGGACTGGGCCGGTCCCTGGCTTACGCATTCTGCCTCTCCGG-CTGGCTGAGCGC
65 GCATGCAGGGGGGACCAGGCCAGTCCCTGACTTACACATTCTGCCTCTACGGTC-GACTAAGC-A
*
16387905 CCGCACGCTCGTTTCGTGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAA
128 CCGCACGCTCGTTTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAA
* * * *
16387960 GCATACAGAGTCCATCCCCATTCTAAGATCAGGACCAGACCGAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGG
16388005 ATTACGGCAG
Statistics
Matches: 190, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
182 2 0.01
183 102 0.54
184 73 0.38
185 13 0.07
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCAGTAGCAAGATCGACAG
CATGCAGGGGGGACCAGGCCAGTCCCTGACTTACACATTCTGCCTCTACGGTCGACTAAGCACCG
CACGCTCGTTTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAA
Found at i:16388181 original size:26 final size:26
Alignment explanation
Indices: 16388145--16388196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16388135 TTGACTTAGC
16388145 CATACGAAGTTC-ATCCCCAGTCTAAG
1 CATACGAAGTTCAAT-CCCAGTCTAAG
*
16388171 CATACGGAGTTCAATCCCAGTCTAAG
1 CATACGAAGTTCAATCCCAGTCTAAG
16388197 ATCAAACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACGAAGTTCAATCCCAGTCTAAG
Found at i:16388518 original size:26 final size:26
Alignment explanation
Indices: 16388488--16388540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16388478 GTTGGCTTAG
16388488 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16388514 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16388540 G
1 G
16388541 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16389236 original size:26 final size:26
Alignment explanation
Indices: 16389207--16389259 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16389197 GTTGACTTAC
*
16389207 GCATACGGAGTTTATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16389233 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16389259 G
1 G
16389260 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16389421 original size:26 final size:26
Alignment explanation
Indices: 16389391--16389443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16389381 GTTGGCTTAG
16389391 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
16389417 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
16389443 G
1 G
16389444 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Done.