Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 109 of 138
Found at i:16390519 original size:26 final size:26
Alignment explanation
Indices: 16390480--16390532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16390470 GTTGACTTAG
*
16390480 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16390506 GCATACGAATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16390532 G
1 G
16390533 ATCTAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16391141 original size:26 final size:26
Alignment explanation
Indices: 16391105--16391209 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
16391095 GTTGACTTAG
16391105 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16391131 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16391157 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16391183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16391209 G
1 G
16391210 ATCGAATCGG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16392409 original size:159 final size:159
Alignment explanation
Indices: 16392172--16392535 Score: 448
Period size: 159 Copynumber: 2.3 Consensus size: 159
16392162 CGCACGCCCG
* * * **
16392172 TTTCGTGGGTTGGCTTAGGTAAAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * *
16392237 GTGGCAGTGGGATCGACAGCACTTAGAC-AGGGACCAGGTCGATCCCCGGCTTGCGCATTATCCC
66 GTAGCAGTAGGATCGACAGCACATAGACGA-GGACCAGGTCGATCCCCGGCTTGCGCATTATCCC
* * *
16392301 TCTCCGATCGGCTCAA-CGCCCAAACGCTCA
130 TCTCCGACCGGAT-AAGCACCCAAACGCTCA
* ** *
16392331 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCA-GTCTAAG-ATCGGACCAGACCAAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACCAAGGG
* * * * * *
16392394 TTGTAGTAGTAGGATCGATAGCACATAGGCGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGC
64 TTGTAGCAGTAGGATCGACAGCACATAGACGAGGACCAGGTCGATCCCCGGCTTGCGCATTATCC
** *
16392459 CTCTCCGACCGGATAAGCACCCGCACGCTCG
129 CTCTCCGACCGGATAAGCACCCAAACGCTCA
16392490 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16392536 ATACGAAGTT
Statistics
Matches: 174, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
158 6 0.03
159 165 0.95
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
GTAGCAGTAGGATCGACAGCACATAGACGAGGACCAGGTCGATCCCCGGCTTGCGCATTATCCCT
CTCCGACCGGATAAGCACCCAAACGCTCA
Found at i:16392558 original size:26 final size:26
Alignment explanation
Indices: 16392508--16392560 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16392498 GTTGGCTTAG
* *
16392508 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
16392534 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
16392560 G
1 G
16392561 ATCAGACGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:16393460 original size:26 final size:26
Alignment explanation
Indices: 16393430--16393482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393420 GTTGACTTAG
16393430 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16393456 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16393482 G
1 G
16393483 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16393477 original size:712 final size:709
Alignment explanation
Indices: 16392105--16393798 Score: 1974
Period size: 712 Copynumber: 2.4 Consensus size: 709
16392095 ACCGGATCGA
* * * * * * * *
16392105 GGGGGATCGGGCCGATCCCCGACTCGTGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCC
1 GGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCC-GCCTGCTGAGTGCCCGCACGCC
* * * *
16392170 CGTTTCGTGGGTTGGCTTAGGTAAAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * * *
16392235 TTGTGGCAGTGGGATC-GACAGCACTT-AGACA-GGGACC-AGGTCGATCCCCGGCTTGCGCATT
130 TTGTGGCAGCGGGATCGGA-AGCA-TTCA-AAAGGGGACCGA-GCCGATCCTCGGCTTACGCATT
* * * * * *
16392296 ATCCCTCTCCGATCGGCTCAACGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
191 ATACCTCTCCGGT-AGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
16392361 CATTCGCAGTCTAAGATCGGACCAGACCAAGGGTTGTAGTAGTAGGATCGATAGCACATAGGCGA
255 CATTC-CAGTCTAAGATCGGACCAGACCAAGGGTTGTAGTAGTAGGATCGACAGCACACAGGCGA
* * * * * *
16392426 GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGATAAGCACCCGCACGCTCGT
319 GGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCCCCGACCGGATAAGCACCCACACGCTCAT
* * *
16392491 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAAT
384 TTCGTGGGTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCAAT
* * * * ** *
16392556 CTAAGATCAGACGGGGCCGAAGGTTGCGGCAATAGGACCAGAAGTAGGATTGGCAGCATGTAGGG
449 CTAAGATCAGACAGGACCGAAGGTTGCGGCAATAGGACCAGAAGCAGGATCGGCAGCACATAGAG
* * * *
16392621 GGGGACCAGACCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCCTATCCGGTCGACTGAG
514 AGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTTCGATCGACCTATCCAGTCGACTGAG
* * * * *
16392686 CCCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATCCTCAGTTTAAGCATATG
579 CCCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATATG
* * * * ** *
16392751 GAGTTCATTCCCAGTCTAAGATTGAACTAGACCGATGTTTACGGCAGCAAGATC-GACAGCACGT
644 GAGTTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACAACAGCAAGATCAG-CAGCACGC
16392815 AG
708 AG
* * * *
16392817 GGGGGACCAGGCCGATCCCCGACTTGCGTATTCTGCCTCTCCGACCTGCTGAGTGCCCGTATGCC
1 GGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCG-CCTGCTGAGTGCCCGCACGCC
* * * *
16392882 CTTTTTGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
*
16392947 TTGTGGCAGCGGGATCGGAAGCATTCAAAAGGGGACCGAGCCGATCCTCGGCTTACGCATTATGC
130 TTGTGGCAGCGGGATCGGAAGCATTCAAAAGGGGACCGAGCCGATCCTCGGCTTACGCATTATAC
* * *
16393012 CTCTCCGGCTAGCTCAGCGCCCGAACGCTCGTATCATGGGTTGACTTAGGCATACGGAGTTTATT
195 CTCTCCGG-TAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
16393077 CTCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGTAGGATCGACAGCATACAGGC-AGGGA
259 C-CAGTCTAAGATCGGACCAGACCAAGGGTTGTAGTAGTAGGATCGACAGCACACAGGCGA-GGA
* * * *
16393141 CCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCCCCGATC-GACTGAGCACCCATACGCTCATTT
322 CCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCCCCGACCGGA-TAAGCACCCACACGCTCATTT
* * * *
16393205 TGTGGGTTAGCTTAGGCATATAGAGTTCATTACATGTCTAAGCATAC-AGAGTTCATTCCTAGTC
386 CGTGGGTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGA-AGTTCATTCCCAATC
* * * *
16393269 TAAGATCAGACCAGGACCGAGGGTTGCGGCAGTAGGACCAGGAGCAGGATCGGTAGCACATA-AG
450 TAAGATCAGA-CAGGACCGAAGGTTGCGGCAATAGGACCAGAAGCAGGATCGGCAGCACATAGAG
* * * * * **
16393333 AGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTTCGATCGACCTATCTAGTCGGTTGAA
514 AGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTTCGATCGACCTATCCAGTCGACTG-A
* * *
16393398 CGCCCGCA-A-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATA
578 -GCCCCCATACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATA
* *
16393461 TGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACAACAGCAGGATCAGCAGCACG
642 TGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACAACAGCAAGATCAGCAGCACG
16393526 CAG
707 CAG
* * * * ** *
16393529 AGGGGACCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGTTGGCTGAGTGCCCGCACGCT
1 GGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGCCT-GCTGAGTGCCCGCACGCC
* * * * *
16393594 CGTTTCATGTGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAAGG
65 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * ** * * * * * *
16393658 TTGTGGCAGCGGGACCGGCAGCACGC-AGAGTGGGGCCGGGCTGATCCTCGGCTTACACATTCTA
130 TTGTGGCAGCGGGATCGGAAGCATTCAAAAG-GGGACCGAGCCGATCCTCGGCTTACGCATTATA
* * * * * *
16393722 CCTCTCCGGTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
194 CCTCTCCGGTAG-CTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
16393787 TCCATGTCTAAG
258 TCCA-GTCTAAG
16393799 CATACGGAGT
Statistics
Matches: 827, Mismatches: 138, Indels: 35
0.83 0.14 0.04
Matches are distributed among these distances:
710 7 0.01
711 167 0.20
712 599 0.72
713 48 0.06
714 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (709 bp):
GGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGCCTGCTGAGTGCCCGCACGCCC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
TGTGGCAGCGGGATCGGAAGCATTCAAAAGGGGACCGAGCCGATCCTCGGCTTACGCATTATACC
TCTCCGGTAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
AGTCTAAGATCGGACCAGACCAAGGGTTGTAGTAGTAGGATCGACAGCACACAGGCGAGGACCAG
GCCGATCCCCAGCTTGCGCATTCTGCCTCCCCGACCGGATAAGCACCCACACGCTCATTTCGTGG
GTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAT
CAGACAGGACCGAAGGTTGCGGCAATAGGACCAGAAGCAGGATCGGCAGCACATAGAGAGGGACC
AGACCGATCCCCGACTTGCACATTCTGCCTCTTCGATCGACCTATCCAGTCGACTGAGCCCCCAT
ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATATGGAGTTCA
TTCCCAGTCTAAGATCGAACTAGACCAAGGGTTACAACAGCAAGATCAGCAGCACGCAG
Found at i:16393822 original size:26 final size:26
Alignment explanation
Indices: 16393772--16393824 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393762 GTTGGCTTAG
*
16393772 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16393798 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16393824 G
1 G
16393825 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16394754 original size:157 final size:156
Alignment explanation
Indices: 16394576--16394857 Score: 381
Period size: 157 Copynumber: 1.8 Consensus size: 156
16394566 GACAGCATAT
** * * *
16394576 CGACAGCACGCAAGGGGGATCGGACCGATCGTCGGCTTGCGCATTCTGCCTCTTCGGCCGG-TTG
1 CGACAGCACGCAAGGGGGATCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTT-
* * *
16394640 AGCACCCGCACGC-CTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCC
65 AGCACCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-TGGTCTAAGCC
16394703 CCAGCGACTGAGGGTTGTGGCAGTGGAAC
128 CCAGCGACTGAGGGTTGTGGCAGTGGAAC
* *
16394732 CGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTT
1 CGACAGCACGCA-AGGGGGATCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTT
* * * *
16394797 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAATTTCATTCCTGGTCTAAG
65 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTGGTCTAAG
16394858 ATCGGACCGG
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
156 13 0.12
157 92 0.85
158 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
CGACAGCACGCAAGGGGGATCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTTA
GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTGGTCTAAGCCCCA
GCGACTGAGGGTTGTGGCAGTGGAAC
Found at i:16395026 original size:26 final size:26
Alignment explanation
Indices: 16394990--16395042 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16394980 GTTGGCTTAG
*
16394990 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16395016 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16395042 G
1 G
16395043 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16395237 original size:26 final size:26
Alignment explanation
Indices: 16395200--16395265 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
16395190 GTTGACTTAG
* **
16395200 GCATACGAAGTTCATCTTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16395226 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16395252 GCATAC-GAGTTCAT
1 GCATACGGAGTTCAT
16395266 TCCTAGTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
25 8 0.22
26 29 0.78
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16395273 original size:25 final size:25
Alignment explanation
Indices: 16395200--16395273 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
16395190 GTTGACTTAG
*
16395200 GCATACGAAGTTCA-TCTTCAGTCTAA
1 GCATACG-AGTTCATTCCT-AGTCTAA
* *
16395226 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAC-GAGTTCATTCCTAGTCTAA
16395252 GCATACGAGTTCATTCCTAGTC
1 GCATACGAGTTCATTCCTAGTC
16395274 AAAGATTGGA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 14 0.34
26 25 0.61
27 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCCTAGTCTAA
Found at i:16395740 original size:158 final size:155
Alignment explanation
Indices: 16395252--16395749 Score: 425
Period size: 157 Copynumber: 3.2 Consensus size: 155
16395242 CCCAGTCTAA
* * * * * *
16395252 GCATACGAGTTCATTCCTAGTCAAAGATTGGACCAGACCGAGGGTTACAGTCCCAGGATCGACAG
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGT-ACAGGATCGACAG
** * *
16395317 CACATAGGGGGGACCGAG-CTGATCCCCGCTTGCGCACTCTGCCTCTCTGACCGGTTGAGTGCCC
65 CACGCAGGGGGGACCGAGTC-GATCCCCGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCCC
*
16395381 GCACACCCATTTCGTGGGTTGGCTTAG
129 GCACACTCATTTCGTGGGTTGGCTTAG
* * ** ** * * * * *
16395408 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTGGGACCGAGGGTTATGGTA-TGTACCGGC
1 GCATA-CGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTACGGTACAGGATCGAC
* * * * * *
16395470 AGCACGCAGAGGGGGACC-ATGTTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
63 AGCACGCAG-GGGGGACCGA-GTCGATCCC-CGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGC
* * * * * *
16395534 ACCGGAACGCTCATTTTCG-AGGTTGACTTAG
125 GCCCGCACACTCA-TTTCGTGGGTTGGCTTAG
* *
16395565 GCATACGAAGTTTATTCCCAGTCTATGATCGGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTA-CAGGATCGACA
* * * * * * * *
16395630 GCATGCAGGGGGGACCGGGTCGGTCCCCAGCTTACGTATTCTGCCTCTCTGGCTGATTGAGCGCC
64 GCACGCAGGGGGGACCGAGTCGATCCCC-GCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCC
16395695 CGCACACTCATTTCGTGGGTTGGCTTAG
128 CGCACACTCATTTCGTGGGTTGGCTTAG
16395723 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATAC-GAGTTCATTCCCA-GTCTAAG
16395750 CATACGGAGT
Statistics
Matches: 255, Mismatches: 69, Indels: 34
0.71 0.19 0.09
Matches are distributed among these distances:
155 13 0.05
156 24 0.09
157 117 0.46
158 87 0.34
159 14 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTACAGGATCGACAGC
ACGCAGGGGGGACCGAGTCGATCCCCGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGC
ACACTCATTTCGTGGGTTGGCTTAG
Found at i:16395759 original size:26 final size:26
Alignment explanation
Indices: 16395723--16395775 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16395713 GTTGGCTTAG
*
16395723 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
16395749 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16395775 G
1 G
16395776 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:16395969 original size:26 final size:26
Alignment explanation
Indices: 16395933--16395985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16395923 GTTGACTTAG
*
16395933 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
16395959 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
16395985 G
1 G
16395986 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:16396273 original size:160 final size:158
Alignment explanation
Indices: 16396015--16396304 Score: 400
Period size: 160 Copynumber: 1.8 Consensus size: 158
16396005 TGCGGCAGTA
* *
16396015 GGATCGACAGCACACAGGGGGGACCGGGTCGATCCTAGGCTTGTGCATTCTGCCTCTCCGACCGG
1 GGATCGACAGCACACAGGGGGGACCGGGTCGATCCTAGGCTTGCGCATTCTACCTCTCCGACCGG
** ** *
16396080 CTGAGTGCCCACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16396145 CCTAGCTGGACCAAGGGTTGTGGCAACG
131 CCTAGCTGGACCAAGGGTTGTGGCAACG
* * * * * *
16396173 GGATCGATAGCACGCAGAGGAGGGACCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCTCCGGCT
1 GGATCGACAGCACACAG-GG-GGGACCGGGTCGATCCTAGGCTTGCGCATTCTACCTCTCCGACC
* * * * *
16396238 GGCTGAGCACCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACGTAGTTGATTCCATGTCTAA
64 GGCTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16396303 GC
129 GC
16396305 ATACAGAGTT
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
158 15 0.13
159 2 0.02
160 95 0.85
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGATCGACAGCACACAGGGGGGACCGGGTCGATCCTAGGCTTGCGCATTCTACCTCTCCGACCGG
CTGAGCACCCACACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCTAGCTGGACCAAGGGTTGTGGCAACG
Found at i:16396314 original size:26 final size:26
Alignment explanation
Indices: 16396277--16396329 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396267 GTTGGCTTAG
*
16396277 GCATACGTAGTTGATT-CCATGTCTAA
1 GCATACGTAGTTCATTCCCA-GTCTAA
16396303 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTCATTCCCAGTCTAA
16396329 G
1 G
16396330 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAGTCTAA
Found at i:16396807 original size:26 final size:26
Alignment explanation
Indices: 16396756--16396808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396746 GTTGACTTAG
* *
16396756 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGCCTAA
*
16396782 GCATACGGAGTTCATTCACAGCCTAA
1 GCATACGGAGTTCATCCACAGCCTAA
16396808 G
1 G
16396809 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGCCTAA
Found at i:16397287 original size:26 final size:26
Alignment explanation
Indices: 16397258--16397310 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16397248 GTTGGCTTAG
*
16397258 GCATACAAAGTTTATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
*
16397284 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16397310 G
1 G
16397311 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16397641 original size:514 final size:505
Alignment explanation
Indices: 16396839--16397907 Score: 1287
Period size: 514 Copynumber: 2.1 Consensus size: 505
16396829 GCGGCAATAA
* ** *
16396839 GATCGACAGCACGCAAGGGGGACTAGGCTGTTCCCCAACTTACGCATTCTGCATCTCCGATCGGT
1 GATCGACAGCACGCAAGGGGGACTAGGCTGATCCCCGGCTTACGTATTCTGCATCTCCGATCGGT
* **
16396904 TAAGTGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* ** * ***
16396969 CCAGCCCGACAGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGCGGGATCGGGTTGATCCCC
131 CCAGCCCGACAGAGGATTGTGGCAGCGGGACCGACAACACACAGAGAGGGATCGGGCCAATCCCC
* * *
16397034 GACTTGCGCATTATGGCTCTCCGACTGGCTCAACGCTCGAACACTCATTTCGTGGGTTGACTTAG
196 GACTTGCGCATTATGCCTCTCCGACAGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAG
*** * * * *
16397099 GCATACGAAATTCATTCCTGGTCTAAGATCGGACCGAACCGAGGGTTGTGGTAGTAGTATCGACA
261 GCATACGAAATTCATTCCCAATCTAAGAT--G---G-A-CGAGGGTTATGGCAGCAGGATCGACA
* * * * ** * * *
16397164 GTACGTAGTGGGGGACCGGGTCGGTCCCCGGCTTGTGCATTCTCCCTCTCCGGTCGGCTGAGCGC
319 GCACGCAG-GGGGGACCAGGCCGGTCCCCGGCTTACGCATTCTACCTCT-CGATCGGCCGAGCGC
* *
16397229 TCGCACGCTTGTTTCATGAGTTGGCTTAGGCATACAAAGTTTATTCCATGTCTAAGCATACAGAG
382 TCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAG
* * *
16397294 TTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGACAGCAGGACCAGCAACAG
447 TTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGACAGCAAGACCAGCAACAG
* * * * *
16397353 GATCGACAGCACGCAGGGGGGACT-GGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCTGATCGG
1 GATCGACAGCACGCAAGGGGGACTAGGCT-GATCCCCGGCTTACGTATTCTGCATCTCCGATCGG
* ** * *
16397417 TTGAGCGCCTGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGC
65 TTAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * * *
16397482 CCCAGTCGGACTGAGGATTGTGGTAGCGGGATCGACAGCACACAGAGAGGGATCGGGCCAATCCC
130 CCCAGCCCGACAGAGGATTGTGGCAGCGGGACCGACAACACACAGAGAGGGATCGGGCCAATCCC
* * * * * * * *
16397547 TGGCTTGCGCGTTATGCCTCTCTGGCAGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTA
195 CGACTTGCGCATTATGCCTCTCCGACAGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTA
* * *
16397612 GGCATACGAAGTTCATTCCCAATCTAAGATGGATGAGGGTTATGGCAGCAGGATCGATAGCACGC
260 GGCATACGAAATTCATTCCCAATCTAAGATGGACGAGGGTTATGGCAGCAGGATCGACAGCACGC
** * *
16397677 AGGGGGGACCAGGCCGGTCCTTGGCTTACGCATTCTACCTCTCGATCGGCCGAGTGCTCGCACTC
325 AGGGGGGACCAGGCCGGTCCCCGGCTTACGCATTCTACCTCTCGATCGGCCGAGCGCTCGCACGC
* * ** *
16397742 TCGTTTCATGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
390 TCGTTTCATGAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
** * *
16397807 CAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAAGACCAGCAGCTG
455 CAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAAGACCAGCAACAG
* * * *
16397858 GATCAACAGCACGTAAGGGGGACCAGGCTGATCCTCGGCTTACGTATTCT
1 GATCGACAGCACGCAAGGGGGACTAGGCTGATCCCCGGCTTACGTATTCT
16397908 ACCTTTTCGA
Statistics
Matches: 467, Mismatches: 85, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
505 158 0.34
506 37 0.08
507 26 0.06
508 1 0.00
509 1 0.00
512 1 0.00
513 3 0.01
514 240 0.51
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (505 bp):
GATCGACAGCACGCAAGGGGGACTAGGCTGATCCCCGGCTTACGTATTCTGCATCTCCGATCGGT
TAAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCCGACAGAGGATTGTGGCAGCGGGACCGACAACACACAGAGAGGGATCGGGCCAATCCCC
GACTTGCGCATTATGCCTCTCCGACAGGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAG
GCATACGAAATTCATTCCCAATCTAAGATGGACGAGGGTTATGGCAGCAGGATCGACAGCACGCA
GGGGGGACCAGGCCGGTCCCCGGCTTACGCATTCTACCTCTCGATCGGCCGAGCGCTCGCACGCT
CGTTTCATGAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAAGACCAGCAACAG
Found at i:16397795 original size:26 final size:26
Alignment explanation
Indices: 16397765--16397815 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16397755 TGGCTTAGGG
16397765 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
16397791 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16397816 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16398012 original size:196 final size:195
Alignment explanation
Indices: 16397656--16398038 Score: 525
Period size: 196 Copynumber: 2.0 Consensus size: 195
16397646 GAGGGTTATG
* * * * *
16397656 GCAGCAGGATCGATAGCACGCAGGGGGGACCAGGCCGGTCCTTGGCTTACGCATTCTACCTCTCG
1 GCAGCAGGATCAACAGCACGCAAGGGGGACCAGGCCGATCCTCGGCTTACGCATTCTACCTCTCG
* ** * * * * *
16397721 ATCGGCCGAGTGCTCGCACTCTCGTTTCATGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTC
66 ATCAGCCGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
* * * *
16397786 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAAGACCA
131 CAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAAGACCA
* * * * *
16397851 GCAGCTGGATCAACAGCACGTAAGGGGGACCAGGCTGATCCTCGGCTTACGTATTCTACCTTTTC
1 GCAGCAGGATCAACAGCACGCAAGGGGGACCAGGCCGATCCTCGGCTTACGCATTCTACC-TCTC
*
16397916 GATCAGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
65 GATCAGCCGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATG
*
16397980 TCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAG
129 TCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAG
16398039 TAGGATCGAT
Statistics
Matches: 162, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
195 51 0.31
196 108 0.67
197 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
GCAGCAGGATCAACAGCACGCAAGGGGGACCAGGCCGATCCTCGGCTTACGCATTCTACCTCTCG
ATCAGCCGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
CAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAAGACCA
Found at i:16398313 original size:26 final size:26
Alignment explanation
Indices: 16398283--16398361 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16398273 ATTGACTTAG
* **
16398283 GCATATAGAGTTCATCTTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16398309 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16398335 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16398361 G
1 G
16398362 ATTGGACCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16398661 original size:158 final size:157
Alignment explanation
Indices: 16398470--16398834 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 157
16398460 CCCGTACACC
* * * * *
16398470 CGTTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGG
1 CGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGG
*
16398535 TAGTGGCAG-CG-GGACCGACAGCACACAGAGGGGGACCATGTCGATCC-CTGGCTTGCGCATTA
66 T--T-GCAGCCGAGGACCGACAGCACACAG-GGGGGACCATGTCGATCCTC-GGCTTACGCATTA
* *
16398597 TGCCACTC-GGTCGGCTCAGCACCCGAACGCT
126 TGCCACTCTGGTCGACTCAACACCCGAACGCT
* * ** * *
16398628 CGTTTCGAGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGG
1 CGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGG
* ** * * * *
16398692 GTTGCAGCCGTAGGATCGACAGCACGTAGGGGGGATCGTGTCGGTCCTCGGCTTACGCATTCTGC
65 GTTGCAGCCG-AGGACCGACAGCACACAGGGGGGACCATGTCGATCCTCGGCTTACGCATTATGC
* * * * * *
16398757 CTCTCTGGTCGACTGAACGCCTGCACGTT
129 CACTCTGGTCGACTCAACACCCGAACGCT
16398786 CGTTTC-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 CGTTTCGA-GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
16398835 TATGGAGTTC
Statistics
Matches: 169, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
155 4 0.02
156 3 0.02
157 37 0.22
158 122 0.72
159 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGG
TTGCAGCCGAGGACCGACAGCACACAGGGGGGACCATGTCGATCCTCGGCTTACGCATTATGCCA
CTCTGGTCGACTCAACACCCGAACGCT
Found at i:16399387 original size:26 final size:26
Alignment explanation
Indices: 16399357--16399409 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16399347 GTTGGCTTAG
16399357 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
16399383 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16399409 G
1 G
16399410 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16405879 original size:26 final size:26
Alignment explanation
Indices: 16405843--16405895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16405833 GTTGACTTAG
16405843 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16405869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16405895 G
1 G
16405896 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16406355 original size:157 final size:156
Alignment explanation
Indices: 16405869--16406369 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 156
16405859 CCCAGTCTAA
* *
16405869 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** ** * * * *
16405933 AGCACGCAGGGGGGACTGGGCCAATCCCCGGCTTATGCATTTTGCCTCAT-CGACCGGTTGAGCA
65 AGCACGTA-GGGGGAC-GGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCCGGCTGGCTGAGCA
* *
16405997 CCCGTAGGCCCGTTTCATGGGTTGGCTTAG
127 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
* * *** * *
16406027 GCATAGGGAGTTCATTCAATGTCTAACCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
16406091 AGCACGTAGAGGGGCACCGGGCTGATCCCTGGTTTGCGCATTATGCCTCTCCGGCTGGCTTAGCA
65 AGCACGTAG-GGGG-A-CGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCA
* * *
16406156 CCCGCACGCTCGTTTCATGGGTTGACTTAA
127 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
*** * * *
16406186 ATGTACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
16406250 AGTATGTAGGGGGATCGGACTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTAGCTGAGCACC
65 AGCACGTAGGGGGA-CGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACC
* * *
16406315 CGTACGTTCGTTTCGTGGTTTGGCTTAG
129 CGTACGCTCGTTTCATGGGTTGGCTTAG
16406343 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16406370 CATATAGAGT
Statistics
Matches: 275, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 88 0.32
158 67 0.24
159 114 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGACGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCG
TACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16406372 original size:26 final size:26
Alignment explanation
Indices: 16406343--16406395 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16406333 TTTGGCTTAG
*
16406343 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16406369 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16406395 G
1 G
16406396 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16407209 original size:26 final size:26
Alignment explanation
Indices: 16407179--16407228 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16407169 GGCTTAGGCG
16407179 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
16407205 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16407229 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:16407567 original size:26 final size:26
Alignment explanation
Indices: 16407531--16407583 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16407521 GTTGACTTAG
16407531 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16407557 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16407583 G
1 G
16407584 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16407939 original size:159 final size:158
Alignment explanation
Indices: 16407557--16407990 Score: 360
Period size: 159 Copynumber: 2.7 Consensus size: 158
16407547 CCTAGTCTAA
* * * *
16407557 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * * *
16407622 GCACG--CAGGGGGA-TCGGGTAGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCG
65 GCACGTAAAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGACTCAACG
* * *
16407684 CCCGCATGCCCATTTTATGGGTTGGCTTAG
129 ACCGCACGCCCATTTTATGGGTTGACTTAG
** * * ** * * *
16407714 GCATAGGGAGTTGATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGC-GGGTCTAG
1 GCATACAGAGTTCATTCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATC-GG
* * * * ** *
16407777 CAGCACGTAAAGGGGGACTGGGCCGATCTCTGGCTTGGGCATTATGCCTTTTTGG-CTGGCTCAA
63 CAGCACGTAAAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC-GACTCAA
* * * *
16407841 CGATCGCACGCTCATTTTGTGGGTTGACTTAT
127 CGACCGCACGCCCATTTTATGGGTTGACTTAG
*
16407873 GCATACAGAGTTTATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
** * * * * * * *
16407938 GCAAATAGA-GGGGACCGGGCCGATCCTCGACTTGCTCATTCTACCTCTCCGGT
65 GCACGTAAAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGT
16407991 TAGCTGAGTG
Statistics
Matches: 208, Mismatches: 58, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
156 9 0.04
157 45 0.22
158 32 0.15
159 114 0.55
160 8 0.04
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGTAAAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGACTCAACGAC
CGCACGCCCATTTTATGGGTTGACTTAG
Found at i:16408606 original size:672 final size:672
Alignment explanation
Indices: 16407202--16409223 Score: 2618
Period size: 672 Copynumber: 3.0 Consensus size: 672
16407192 CCATGTCTAA
** * * *
16407202 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * *
16407267 GCACGCAGAGGGGATCGAACCGATACTCGACTTGCGCATTCTGCCTCTCTGGTCAGCTGAGCACC
66 GCACGCAGAGGGGACCGAACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTAGCTGAGCGCC
* * * * *
16407332 AGCACGCTCGTTTCGTGGGTTGGTTTAGGCTTACAGAGTTCATTCCATGTCTAAACCCCAGTCGG
131 AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * **
16407397 ACCGAGGGTTATGGTAGCAGGACTGGAAGCGGGATCGACAGCACGCAAAGGGGGACCGTACTGAT
196 ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT
* * * * ** *
16407462 CCTCGGCTTACGCATTATACCTCTCCGGCCGACTGA--GCACTCGCACGCTCGTTTCGTGGGTTG
261 CCCCGGATTGCGCATTATGCCTCTCCGGCCGGTTGAGTGC-CT-GCACGCTCGTTTCATGGGTTG
* * *
16407525 ACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGG
324 ACTTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGA-AGTTCATTCTCAGTCTAAGATCGG
* * * * * * * *
16407589 ACCGGACCGAGGGTTGCGACAGTAGGATCGGTAGCACGCAG-GGGGATCGGGTAGGTCCCCGGCT
388 ACCGGATCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGATCGGGTCGATCCTCGGCT
* * *
16407653 TGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCATGCCCATTTTATGGGTTGGCTTAGGCAT
453 TGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCAT
* * * * **
16407718 AGGGAGTTGATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGTCTAGCAGCAC
518 CGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCAC
* * * * ** * * * **
16407783 GTAAAGGGGGACTGGGCCGATCTCTGGCTTGGGCATTATGCCTTTTTGG-CTGGCTCAACGATCG
583 GTAGAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTTGGTC-GGCTCAGCGCCCG
* *
16407847 CACGCTCATTTTGTGGGTTGACTTAT
647 CACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
16407873 GCATACAGAGTTTATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
*** ** * * *
16407938 GCAAATAGAGGGGACCGGGCCGATCCTCGACTTGCTCATTCTACCTCTCCGGTTAGCTGAGTGCC
66 GCACGCAGAGGGGACCGAACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTAGCTGAGCGCC
* * * *
16408003 CGCACGTTCGTTTCGTGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAAGTCCCAGCCGG
131 AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
** * * * * *
16408068 ATTGAGGGTTGTGGCAACAAGACCGGTAGCGAGATCGACAGCATGCAGAGGGGGATTGGGCTGAT
196 ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT
* ** *
16408133 CCCCGGATTGCACATTATGCCTCTCCAACCGGTTGAGTGCCTACACGCTCGTTTCATGGGTTGAC
261 CCCCGGATTGCGCATTATGCCTCTCCGGCCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGAC
16408198 TTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACC
326 TTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACC
* * *
16408263 GGATCAAGGGTTAAGGCAGCAAGATCGGCAGCACGCAGAGGGGATCGGGTCGATCCTCGGCTTGC
391 GGATCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGATCGGGTCGATCCTCGGCTTGC
* *
16408328 GCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATCGG
456 GCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATCGG
* *
16408393 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAACGGGACCGGCAGCACGTA
521 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTA
* *
16408458 GAGTGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACG
586 GAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCGCCCGCACG
16408523 CTCGTTTCGTGGGTTGACTTAT
651 CTCGTTTCGTGGGTTGACTTAT
* * * * *
16408545 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * * * * *
16408610 GCACGCAGGGGGGACCGATCCAATCCCCGGCATGCGCATTCTGCCTCTCCGGCTAACTGAGCGCC
66 GCACGCAGAGGGGACCGAACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTAGCTGAGCGCC
* * *
16408675 TGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * *
16408740 ACCGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATCGGCAGCACACAGAGGGGGATCGGGCTGAT
196 ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT
* * * * * *
16408805 CCCCGGTTTGCGTATTATGCCTCTCCGGTCAGTTGAGTGCCCGCACGCTTGTTTCATGGGTTGAC
261 CCCCGGATTGCGCATTATGCCTCTCCGGCCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGAC
* *
16408870 TTCAGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACC
326 TTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACC
* * *
16408935 AGATCGAGGGTTACGACAGCAAGATCGGCAACACGCA-AGGGGGACCGGGTCGAT-CTCTGGCTT
391 GGATCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGA-GGGGATCGGGTCGATCCTC-GGCTT
* * * * * *
16408998 GCGCATTCTGTCTCTCCGACCGACTGAGTGCCCGCACACCCGTTTTGTGGGTTGGCCTAGGCATC
454 GCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATC
* * * *
16409063 GGGAGTTCATTCCATGTCTAAGCCCCTGCCGAACAGAGGGTTGTGGCAGCGGGACCGACAGCACG
519 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACG
* * * ** * *
16409128 CAGAGAGAGACCGGGCCAATCCCCAGCTCACGCATTACGCCTCTTTGGTCGGCTCAGGGCCCGCA
584 TAGAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCGCCCGCA
16409193 CGCTCGTTTCGTGGGTTGACTTAT
649 CGCTCGTTTCGTGGGTTGACTTAT
16409217 GCATACG
1 GCATACG
16409224 AGTCAGATCG
Statistics
Matches: 1162, Mismatches: 182, Indels: 13
0.86 0.13 0.01
Matches are distributed among these distances:
671 355 0.31
672 804 0.69
673 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (672 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGACCGAACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTAGCTGAGCGCC
AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT
CCCCGGATTGCGCATTATGCCTCTCCGGCCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGAC
TTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCGGACC
GGATCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGATCGGGTCGATCCTCGGCTTGC
GCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATCGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTA
GAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAT
Found at i:16408691 original size:158 final size:158
Alignment explanation
Indices: 16408277--16408765 Score: 549
Period size: 158 Copynumber: 3.1 Consensus size: 158
16408267 CAAGGGTTAA
* * * * *
16408277 GGCAGCAAGATCGGCAGCACGCAGAGGGGATCGGGT-CGATCCTCGGCTTGCGCATTCTACCTCT
1 GGCAGCAGGATCGGCAGCACGCAGGGGGGA-CCGGTCCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * *
16408341 CCGATCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT-CGGGAGTTCATTCCA
65 CCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCA
*
16408405 TGTCTAAGCCCCAGCCGGACCGAAGGTTGT
129 TGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* * * * * * * *
16408435 GGCAACGGGACCGGCAGCACGTAGAGTGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCT
1 GGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGTCCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
16408500 TCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA
65 CCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCA
** *
16408565 -GTCTAAG-ATCGGACCGGACCGAGGGTTGT
129 TGTCTAAGCCCCAG-CCGGACCGAGGGTTGT
** * * * * *
16408594 GATAGTAGGATCGACAGCACGCAGGGGGGACCGATCCAATCCCCGGCATGCGCATTCTGCCTCTC
1 GGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGTCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * *
16408659 CGG-CTAACTGAGCGCCTGCACGCTCATTTCGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCA
66 CGGTC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCA
16408722 TGTCTAAGCCCCAGCCGGACCGAGGGTTGT
129 TGTCTAAGCCCCAGCCGGACCGAGGGTTGT
16408752 GGCAGCAGGATCGG
1 GGCAGCAGGATCGG
16408766 TAGCGGGATC
Statistics
Matches: 266, Mismatches: 56, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 139 0.52
159 119 0.45
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGTCCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCGAGGGTTGT
Found at i:16410366 original size:317 final size:313
Alignment explanation
Indices: 16409404--16410537 Score: 962
Period size: 317 Copynumber: 3.6 Consensus size: 313
16409394 CCTAGTCTAA
* * *
16409404 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGCGTCAGTAGGATC-GAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGTAGGATCAGAC
* * * * * *
16409468 AACACACAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCCCTCCGGTTGGCTAAGCAC
66 AGCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
** * *
16409533 CCGCACACCCGTTTCATGCATTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
131 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
** ** * * * * *
16409598 GACCGAGGGTTGTGGCAGCGGGACCAACAGTACGTAGAAGGGGACCGGGCCAATCCCCGGCTTGT
196 GACCGAGGGTTGTGGCAGCAAGACTGACAGCACGCAGAGGGGGACCGGGCCGAT-CCCAGCTTGT
* * * * * * * *
16409663 GCATTATGCCTCTTCAGCTGGCTCAACATCC-GAACACTTGTTTCGTGGGTTGACTTAT
260 GCATTATG-CTCTTCA-CCGACTCAGC-GCCTG-ACGCTCGTTTCATTGGTTGAC-TAT
* * * *** * * * *
16409721 GCATACAAAGTTCACTGCCAGTCTAAGATCAG---ATTTCAAGGGTTACGACAGCAAGATC-TAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGTAGGATCAGAC
* * * * ** *
16409782 AGCACGCAGAGGGGACCGGGCCAATCCCCGACTTGCGCATTCTATCTCTCC-AGTCGGCTGAGCG
66 AGCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCA
* ** * ** * * *
16409846 CCCGCACGCTTGTTTCATGAGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAG-CCTAGGC
130 CCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-GT
* * *
16409910 CGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCT
194 CGGACCGAGGGTTGTGGCAGCA--A--G--A-C----T-GACAGCACGCAGAGGGGGACCGGGCC
* * * * * * * **
16409975 GATCCCCGACTTGTGCATTATGC-C-TCACC-AATC-G-G-TTGA-GCAC-CTGCA-TGCTCAAT
247 GATCCCAG-CTTGTGCATTATGCTCTTCACCGACTCAGCGCCTGACGCTCGTTTCATTGGTTGA-
*
16410031 CTAA
310 CTAT
* * * *
16410035 GTATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTCCGACAGTAGGATCAG-C
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGTAGGATCAGAC
* * * * * * * *
16410099 AGGACGCAGGGGGAACCGGGCCGAT-CTTCGGCTTGTGCATTCTTCCTCTTCGATCGGCTGAGCA
66 AGCACACAGGGGGGACCGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* *
16410163 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGTC
130 CCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
*
16410228 GGACCGAGGGTTGTGGCAGCAAGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGCTTG
195 GGACCGAGGGTTGTGGCAGCAAGACTGACAGCACGCAGAGGGGGACCGGGCCGATCC-CAGCTTG
16410293 TGCATTATGCTTCTTCGACCGACTCAGCGCCTGCACGCTCGTTTCATTGGTTGACGTAT
259 TGCATTATGC-TCTTC-ACCGACTCAGCGCCTG-ACGCTCGTTTCATTGGTTGAC-TAT
* * *
16410352 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGATAGTAGGA-CTGA
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGTAGGATCAGA
* * * * * *
16410415 CAGCACACAGGGGGGACTGAGCTGATCCCTGACTTGTGCATTCTGCCTCTCCCG-CCGGCTGAGT
65 CAGCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCT-CCGATCGGCTGAGC
* * * * *
16410479 ACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
129 ACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16410538 ATACAGAGTT
Statistics
Matches: 635, Mismatches: 140, Indels: 84
0.74 0.16 0.10
Matches are distributed among these distances:
305 42 0.07
306 3 0.00
307 1 0.00
308 2 0.00
309 3 0.00
310 4 0.01
311 2 0.00
312 1 0.00
313 6 0.01
314 171 0.27
315 7 0.01
316 9 0.01
317 325 0.51
318 10 0.02
320 1 0.00
321 3 0.00
322 1 0.00
323 3 0.00
324 1 0.00
325 5 0.01
326 35 0.06
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (313 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGTAGGATCAGAC
AGCACACAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
GACCGAGGGTTGTGGCAGCAAGACTGACAGCACGCAGAGGGGGACCGGGCCGATCCCAGCTTGTG
CATTATGCTCTTCACCGACTCAGCGCCTGACGCTCGTTTCATTGGTTGACTAT
Found at i:16410514 original size:158 final size:157
Alignment explanation
Indices: 16410037--16410536 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 157
16410027 CAATCTAAGT
* * * * *
16410037 ATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTCCGACAGTAGGA-TCAGCA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGACTGA-CA
* * * * * *
16410100 GGACGCAGGGGGAACCGGGCCGATCTTCGGCTTGTGCATTCTTCCTCTTCGATCGGCTGAGCACC
64 GCACGCAGGGGGGACCGGGCCGATCCT-GACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCACC
* * *
16410165 CGCACACCCGTTTCGTGGGTTGGCTTAGGC
128 TGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** * * * * * * *
16410195 ATAGGGACTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAAGACTGGCAG
1 ATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGTAGGACTGACAG
* * * * * *
16410259 CACGCAGAGGGGGACCGGGCCGATCCTCAGCTTGTGCATTATGCTTCTTCGACCGACTCAGCGCC
65 CACGCAG-GGGGGACCGGGCCGATCCTGA-CTTGTGCATTCTGCCTCTTCGACCGGCTGAGCACC
* * * * *
16410324 TGCACGCTCGTTTCATTGGTTGACGTATGC
128 TGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * *
16410354 ATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAAACCGAGGGTTGCGATAGTAGGACTGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGACTGACAG
* * * * * *
16410418 CACACAGGGGGGACTGAGCTGATCCCTGACTTGTGCATTCTGCCTCTCCCG-CCGGCTGAGTACC
65 CACGCAGGGGGGACCGGGCCGAT-CCTGACTTGTGCATTCTGCCTCT-TCGACCGGCTGAGCACC
16410482 TGCACGCTCGTTTCGTGGGTTGGCTTAGGC
128 TGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
16410512 ATATGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
16410537 CATACAGAGT
Statistics
Matches: 263, Mismatches: 69, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 6 0.02
158 130 0.49
159 124 0.47
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGACTGACAGC
ACGCAGGGGGGACCGGGCCGATCCTGACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCACCTGC
ACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:16411743 original size:26 final size:26
Alignment explanation
Indices: 16411714--16411766 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16411704 GTTGGCTTAG
16411714 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
16411740 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16411766 G
1 G
16411767 ATAGGACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16415356 original size:26 final size:26
Alignment explanation
Indices: 16415326--16415378 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16415316 GTTGGCTTAG
*
16415326 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16415352 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16415378 G
1 G
16415379 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16415742 original size:26 final size:26
Alignment explanation
Indices: 16415706--16415758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16415696 GTTGACTTAG
16415706 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16415732 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16415758 G
1 G
16415759 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16416209 original size:157 final size:158
Alignment explanation
Indices: 16415732--16416231 Score: 481
Period size: 157 Copynumber: 3.2 Consensus size: 158
16415722 CCCAGTCTAA
* ** * *
16415732 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCT-GCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-ATGGCAGCAGGATCGAC
* *
16415796 AGCACGCA-GGGGGA-TCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCG
65 AGCACGCAGGGGGGACT-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCG
* * *
16415859 CCCGCACGCCCGTTTCATGGGTTAGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** ** * * * * *
16415889 GCATAGGGAGTTCATTCTGTGTCTAAGCCCTAG-CCAGACTGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTATGGCAGCAGGATCGAC
* * * * * * * * * *
16415953 AGCATGCAGAGGGGGACCGAGTCGATCCTCGGCTTGTGCATTATGCCTCTTCGACCGAATCAGTG
65 AGCACGCAG-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCG
* ** * * *
16416018 CCTGCACTTTCGTTTCGTGGGTTGACTAAT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16416048 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGATTATGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGACA
* ** * * *
16416113 GCACGTAGGGGGGACTGGGCCGATCC-CCACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
66 GCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCC
* *
16416177 CGCACGCTCATTTCGTTGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
16416205 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16416232 CATACAGATT
Statistics
Matches: 263, Mismatches: 73, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
156 4 0.02
157 123 0.47
158 18 0.07
159 118 0.45
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16416244 original size:26 final size:26
Alignment explanation
Indices: 16416205--16416257 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16416195 GTTGGCTTAG
*
16416205 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16416231 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16416257 G
1 G
16416258 ATTTTAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16417287 original size:158 final size:157
Alignment explanation
Indices: 16416960--16417293 Score: 368
Period size: 158 Copynumber: 2.1 Consensus size: 157
16416950 AAGCATATGG
* * * * * * *
16416960 AGTTCATTCCTAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGTACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGTAAGATCGACAGGACGCAG
* ** * * * **
16417025 GGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGTACGCTC
66 GGGGACCAGGCCAATCCCTGACTTACGCATTATGCCTCTTCGACCAGCTCAACGCCCACACGCTC
** * *
16417090 GTTTCATGGGTTGACTTTTGCATATGG
131 GTTTCATGGGTTGACTTAGGCATACGA
* * *
16417117 AGTGCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGGTAGTAAGATCGACAGGACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGTAAGATCGACAGGACGCA-
* *
16417182 GGGGGACCAGGCCAAT-CCTCGACTTACGCATTCTGCCTC-TCTGACCATCT-AAGCGCCCACAC
65 GGGGGACCAGGCCAATCCCT-GACTTACGCATTATGCCTCTTC-GACCAGCTCAA-CGCCCACAC
* *
16417244 GCTTGTTTCGTGGGTTGACTTAGGCATACGA
127 GCTCGTTTCATGGGTTGACTTAGGCATACGA
*
16417275 AGTTCATCCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
16417294 CATACAGAGT
Statistics
Matches: 145, Mismatches: 28, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
157 61 0.42
158 84 0.58
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGTAAGATCGACAGGACGCAG
GGGGACCAGGCCAATCCCTGACTTACGCATTATGCCTCTTCGACCAGCTCAACGCCCACACGCTC
GTTTCATGGGTTGACTTAGGCATACGA
Found at i:16417304 original size:26 final size:26
Alignment explanation
Indices: 16417267--16417319 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16417257 GTTGACTTAG
*
16417267 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
16417293 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
16417319 G
1 G
16417320 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16417557 original size:341 final size:341
Alignment explanation
Indices: 16416892--16417668 Score: 845
Period size: 341 Copynumber: 2.3 Consensus size: 341
16416882 TGGTCGACTG
*
16416892 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* * * * * * * * *
16416957 TGGAGTTCATTCCTAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGTACG
66 CGGAGTTCATTCCCAGTCTAAGATGAGACCAAACCGAGGGTTACGACAATAGGATCGACAGCACG
* * *
16417022 CAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGTACG
131 CAGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACG
* * * * * *
16417087 CTCGTTTCATGGGTTGACTTTTGCATATGGAGTGCATTCCCAGTCTAAGATCAGACCGGACCAAA
196 CCCGTTTCATGGGTTGACATATGCATAAGGAGTGCATTCCCAGTCTAAGACCAGACCAGACCAAA
* * * * * *
16417152 GGTTGCGGTAGTAAGATCGACAGGACGCAGGGGGGACCAGGCCAATCCTCGACTTACGCATTCTG
261 GGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGACCAAGCCAATCCTCGACTTACACATTCTG
*
16417217 CCTCTCTGA-CCATCTA
326 CCTCTCCGATCCAT-TA
* **
16417233 AGCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* *
16417298 CAGAGTTCATTCCCAATCTAAGATCGA-ACCAAACCGAGGGTTACGACAATAGGATC-AGCAGCA
66 CGGAGTTCATTCCCAGTCTAAGAT-GAGACCAAACCGAGGGTTACGACAATAGGATCGA-CAGCA
* * * * *
16417361 CGCAGGGGGAACCAGGCTGAT-CCTCGGCTTGCGTATTCTGCCTCTCCGGCTGGCTGAGA-GCCC
129 CGCAGGGGG-ACCAGGCTGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCGGCTCA-ACGCCC
** * * *
16417424 GCACGCCCGTTTTGTGGGTTGGCATATGCATAAGGAGTTCATT-CCATGTCTAAGCCCCA-ACCA
191 GCACGCCCGTTTCATGGGTTGACATATGCATAAGGAGTGCATTCCCA-GTCTAAG-ACCAGACCA
* * * ** * * * *
16417487 GACCGAGGGTTGTGGCAGCGGGA-CTGACAGCACGCA-AGGGGATCAAGCCAGTCCTCGGCTTGC
254 GACCAAAGGTTGCGGCAGCAAGATC-GACAGCACGCAGAGGGGACCAAGCCAATCCTCGACTTAC
** *
16417550 ACATTCTGCCTCTCCGATCGGTTG
318 ACATTCTGCCTCTCCGATCCATTA
* * * * * *
16417574 AGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-ACCATATCTAAGCAT
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCAT
* *
16417638 ACGGAGTTCATTCCCAGTCAAAGATTAGACC
65 ACGGAGTTCATTCCCAGTCTAAGATGAGACC
16417669 GGACCAACGG
Statistics
Matches: 359, Mismatches: 66, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
340 5 0.01
341 238 0.66
342 113 0.31
343 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (341 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATGAGACCAAACCGAGGGTTACGACAATAGGATCGACAGCACG
CAGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACG
CCCGTTTCATGGGTTGACATATGCATAAGGAGTGCATTCCCAGTCTAAGACCAGACCAGACCAAA
GGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGACCAAGCCAATCCTCGACTTACACATTCTG
CCTCTCCGATCCATTA
Found at i:16419491 original size:25 final size:26
Alignment explanation
Indices: 16419444--16419496 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
16419434 TGGGTTGACT
*
16419444 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
16419470 TAGGCATACGG-GTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
16419495 TA
1 TA
16419497 AGATCGAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:16419977 original size:26 final size:26
Alignment explanation
Indices: 16419947--16419998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419937 GTTGGCTTAG
16419947 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16419973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16419999 TATTGGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16420347 original size:158 final size:159
Alignment explanation
Indices: 16420115--16420485 Score: 397
Period size: 159 Copynumber: 2.3 Consensus size: 159
16420105 CTGAGCACCG
* * * * *
16420115 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGATCAAACCGG
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGACCAAACCAG
* * * * * * *
16420179 ACCGAAGGTTGTGGTAGCAGGATCGGTAGGATGCAG-GGGGGACCGGGTTGATCCTCAGTTTACT
65 ACCGAAGGTTGTGGTAGCAGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACG
* * ** *
16420243 TATT-TCGCCTCTCCGGTCTACTGAAAGCCC
130 CATTCT-ACCTCTCCGACCGACTGAAAGCCC
* * * * * **
16420273 GTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGA
* * * *
16420338 CCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGC
66 CCGAAGGTTGTGGTAGCAGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGC
* * ** *
16420403 ATTCTACCTTTCCGACCGGCTGAGTGCTC
131 ATTCTACCTCTCCGACCGACTGAAAGCCC
*
16420432 GCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16420486 TATATGGAGT
Statistics
Matches: 173, Mismatches: 37, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
157 3 0.02
158 79 0.46
159 90 0.52
160 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (159 bp):
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGA
CCGAAGGTTGTGGTAGCAGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGC
ATTCTACCTCTCCGACCGACTGAAAGCCC
Found at i:16421816 original size:26 final size:26
Alignment explanation
Indices: 16421780--16421832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421770 GTTGACTTAG
*
16421780 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
16421806 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
16421832 G
1 G
16421833 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:16422095 original size:291 final size:293
Alignment explanation
Indices: 16421754--16422331 Score: 741
Period size: 298 Copynumber: 2.0 Consensus size: 293
16421744 AATTTAGAAG
* *
16421754 CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * ** *
16421819 ATTACCAGTCTAAGATCGAACCAGACTGAGGGTTACGATAGTAGGATCGATAGCA-C-GTATCGG
66 ATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAGGATCGATAGCACCGGGATCGG
* * * * * * * *
16421882 GTCGATCCCCGGCTTGTGCATTCTGCTTCT-CTGGTCGGTTGAGCGCTCGTACGCCCGTTTCATG
131 GCCGATCCCCGGCTTGCGCAATCTGCCTCTCCT-GCCGGCTGAGCACCCGTACGCCCGTTTCATG
* *
16421946 GGTTGGCTTAGGCATAGGTAGTTCATTCCGTGTCTAAGCCCCAGAC-GGACCGAGGGTTATGGCA
195 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTATGGCA
* *
16422010 GTGGGACCGACAGCATGCAGAGGGTTGAGCACCCA
259 GCGGGACCGACAGCACGCAGAGGGTTGAGCACCCA
16422045 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * ** * *
16422110 ATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGCCAACAGGATCGGTAGCACGCAGGGGGG
66 ATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAGGATCGATAGCAC-C----GGG
**
16422175 ATCGGGCCGATCCTTGGCTTGCGCAATCTGCCTCTCCTGCCGGCTGAGCACCCGTACGCCCGTTT
126 ATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCTGCCGGCTGAGCACCCGTACGCCCGTTT
* * * *
16422240 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCTGGACTGAGGGTTGTG
191 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTATG
* * *
16422305 GTAGCGGGACTGACAGCACGTAGAGGG
256 GCAGCGGGACCGACAGCACGCAGAGGG
16422332 AGATCGGGTC
Statistics
Matches: 242, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
291 106 0.44
293 1 0.00
297 1 0.00
298 132 0.55
299 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (293 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTACCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAGGATCGATAGCACCGGGATCGG
GCCGATCCCCGGCTTGCGCAATCTGCCTCTCCTGCCGGCTGAGCACCCGTACGCCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGC
GGGACCGACAGCACGCAGAGGGTTGAGCACCCA
Found at i:16422107 original size:26 final size:26
Alignment explanation
Indices: 16422071--16422123 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16422061 GTTGACTTAG
16422071 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16422097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16422123 G
1 G
16422124 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16422581 original size:158 final size:158
Alignment explanation
Indices: 16422097--16422598 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 158
16422087 CCCAGTCTAA
* * ** * * **
16422097 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGCCAACAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGAC
* * * * * * * *
16422161 AGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCAATCTGCCTCTCCTGCCGGCTGAGCAC
65 AGCACGTAGAGGGGATCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGC
* *
16422226 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
16422255 GCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCT-GGACTGAGGGTTGTGGTAGCGGGACTGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGAC
* * * * ** *
16422319 AGCACGTAGAGGGAGATCGGG-TCGATCCTTGACTTGTGCATTATGACTCTTTGGTCGGCTCAAC
65 AGCACGTAGAGGG-GATCGGGCT-GATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAAC
** * *
16422383 GCCCGCACATTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16422414 GCATACGGAGTTCATTCACA-GTCTAAGATCAGATCCGACTGAAGGTTGTGGTAGTAGGATTGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGAC
* * *
16422478 AGCACGTAGAGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAACGC
65 AGCACGTAGAGGGGATCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGC
16422543 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16422572 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16422599 CAAACAGAGT
Statistics
Matches: 277, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 145 0.52
159 125 0.45
160 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATTGACA
GCACGTAGAGGGGATCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16423831 original size:26 final size:26
Alignment explanation
Indices: 16423795--16423847 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16423785 GTTGGCTTAG
*
16423795 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
16423821 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
16423847 G
1 G
16423848 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:16423967 original size:184 final size:185
Alignment explanation
Indices: 16423637--16424548 Score: 749
Period size: 184 Copynumber: 4.9 Consensus size: 185
16423627 GTTGACTTAG
* * * *
16423637 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-G-ATGGCAGGATTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCA--GCAGGATCGA
* * * * *** *
16423700 TAGCACACAGGAGGGATC-AGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTGGCTGAGC
64 CAGCACGCAGGGGGGATCGAGCTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
16423764 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
129 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
* * *
16423821 GCATACGGAGTTCATTGCCAGTCTAAGATCAGACCGGATCAAGGGTTGTAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGATCGACA
* * * *
16423886 GCACGCAGGGGGGATCGAACT-GATCCTCGGCTTGCGTATTCTGTCTCTCCGACCGACTGAGCAC
66 GCACGCAGGGGGGATCGAGCTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* *
16423950 CCGTACGCTCATTTCGTGGGTTGACTTAGGCATACT-GAGTTCATCCCCA-GTCTAA
131 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-TGGAGTTCAT-TCCATGTCTAA
* * * * * * * ** *
16424005 GCATACGAAGTTGATTCACAATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCATGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGATCGACA
* * * * * * * **
16424070 GCATGTAGGGGGGACCG-GGTCGATCCCCGGCTTGCGCATTCTGCCTTTCC-AGCCGACTGAGTG
66 GCACGCAGGGGGGATCGAGCTCGATCCTCGACTTGCGCATTCTGCCTCTCCGA-CCGACTGAGCA
* * * * *
16424133 CCCGTACG-TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAA
130 CCCGCACGCT-CATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
* * *
16424189 GCATACAGAGTTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTACGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT---GT---------AGCA
* * *
16424254 GCAGGATCGACAGCACGCAGGGGGGATCGAGCT-GATCCTCGACTTACGCATTCTGCCTTTTCGA
54 GCAGGATCGACAGCACGCAGGGGGGATCGAGCTCGATCCTCGACTTGCGCATTCTGCCTCTCCGA
* * * * * *
16424318 CTGACTGAG-AGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGC
119 CCGACTGAGCA-CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAT-GT
16424381 CTAA
182 CTAA
* * * * * * * * * **
16424385 GCATACGGAGTTCATTCCCAGTCTATGATCATACCGGCCCGAGGGTTATGGAAG-TGAGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAG-GATCGAC
* * * * ** * *
16424449 AGCACGCAGAGGGGGA-CTGAGCT-GATCCTC-AGCTTGCCCGTTATGCCTCTTCGGTCGGCTCA
65 AGCACGCAG-GGGGGATC-GAGCTCGATCCTCGA-CTTGCGCATTCTGCCTCTCCGACCGACTGA
* * *
16424511 GCGCCCGCGCGCTCATTTCGTGGGTTGACTTATGCATA
127 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
16424549 CAGAGTTAAT
Statistics
Matches: 585, Mismatches: 111, Indels: 63
0.77 0.15 0.08
Matches are distributed among these distances:
183 6 0.01
184 350 0.60
185 77 0.13
186 1 0.00
187 1 0.00
193 1 0.00
195 3 0.01
196 142 0.24
197 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
Found at i:16424431 original size:380 final size:368
Alignment explanation
Indices: 16423637--16424431 Score: 946
Period size: 368 Copynumber: 2.1 Consensus size: 368
16423627 GTTGACTTAG
* ** * *
16423637 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATGGCAGGATTGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * ** *
16423702 GCACACAGGAGGGATCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
66 GCACACAGGAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCC
* * * *
16423767 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGT
131 CACACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAGAGT
* * *
16423832 TCATTGCCAGTCTAAGATCAGACCGGATCAAGGGTTGTAGCAGCAGGATTGACAGCACGCAGGGG
196 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGCAGGGG
* * * * *
16423897 GGATCGAACTGATCCTCGGCTTGCGTATTCTGTCTCTCCGACCGACTGAGCACCCGTACGCTCAT
261 GGATCGAACTGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCAT
* *
16423962 TTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAA
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAA
* * * * * *
16424005 GCATACGAAGTTGATTCACAATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCATGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
*** * * * * *
16424070 GCATGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGCCGACTGAGTGCC
66 GCACACAGGAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCC
** *
16424135 CGTACG-TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCATACAGAG
131 CACACGCT-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAGAG
* *
16424199 TTCATTCCCAGTCTAAGATTAGATCGGACCAAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGA
195 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT---GT---------AGCAGCAGGATCGA
* * * *
16424264 CAGCACGCAGGGGGGATCGAGCTGATCCTCGACTTACGCATTCTGCCTTTTCGACTGACTGAG-A
248 CAGCACGCAGGGGGGATCGAACTGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCA
* * *
16424328 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGCCTAA
313 -CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAA
* * * * *
16424385 GCATACGGAGTTCATTCCCAGTCTATGATCATACCGGCCCGAGGGTT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
16424432 ATGGAAGTGA
Statistics
Matches: 353, Mismatches: 60, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
367 1 0.00
368 193 0.55
371 2 0.01
379 1 0.00
380 156 0.44
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (368 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGGAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCC
CACACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGATCGACAGCACGCAGGGG
GGATCGAACTGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCAT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAA
Found at i:16425455 original size:26 final size:26
Alignment explanation
Indices: 16425419--16425471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16425409 GTTGACTTAG
16425419 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16425445 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16425471 G
1 G
16425472 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16425733 original size:159 final size:157
Alignment explanation
Indices: 16425515--16426237 Score: 483
Period size: 159 Copynumber: 4.6 Consensus size: 157
16425505 CACGCAGGGT
* * * * * * * * *
16425515 GGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTTTGACCGACTGAGCACCCGCACGCCCGT
1 GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCTGACTGAGCGCCCGCACGCTCGT
16425580 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCTTTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
66 TTCGTGGGTTGGCTTAGGCATAGGGAGTTC-TTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
**
16425645 CGGCAGCGAGACCGGTAGCACGCAGAAGG
130 CGGCAG-GAGACCGACAGCACGCAGAAGG
* * * * *
16425674 GGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCTGGCTGGCTCAGCGCCCGCACGCTCGT
1 GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCTGACTGAGCGCCCGCACGCTCGT
** ** * * * * ** * *
16425739 TTCGTGGGTTGAATTAGGCATACAGAATTCATTCCTAGTCTAAG-ACCAGACTAGATCGAGGGCT
66 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCAT-GTCTAAGCCCCAG-CCGGACCGAGGGTT
* * * *
16425803 GCGGTAGTAGGATCGACAGCACGCAG-AGA
129 GCGGCAGGA-GACCGACAGCACGCAGAAGG
* * * * * * * * *
16425832 GGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG-TCGACTGAGTGCCCGGACGCTTG
1 GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCT-GACTGAGCGCCCGCACGCTCG
* * *
16425896 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTC-TTTCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * *
16425961 GTGGCAGTGGGACCGACAGCACGCATAGGG
129 GCGGCAG-GAGACCGACAGCACGCAGAAGG
** * * ***
16425991 GGACCGGGCCGATCCATGGCTTGCACATTATGCCTCT-TCGG-TCGACTCAGCTGCCTAAACGCT
1 GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCT-GGCT-GACTGAGC-GCCCGCACGCT
* * * * * ** * *
16426054 CATTTCGTGGGTTGACTTATGTATACGGG-GTTCATTCCCA-GTCTAAG-ATCAGACCGCACGGA
63 CGTTTCGTGGGTTGGCTTAGGCATA-GGGAGTTC-TT-TCATGTCTAAGCCCCAG-CCGGACCGA
* * * * *
16426116 GGGTTGTGGCAGCAGGATCGATAGCACGCAGTAGG
124 GGGTTGCGGCAGGA-GACCGACAGCACGCAGAAGG
* * * * ** * * * * * *
16426151 GGATCGAGCTGATCCTCGACTTGTGCATTCTACCTCTCT-GATCGACTAAGCGCTCGCATGCTCG
1 GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCT-GACTGAGCGCCCGCACGCTCG
* *
16426215 TTTCATGGGTTGACTTAGGCATA
65 TTTCGTGGGTTGGCTTAGGCATA
16426238 CAGAGTTCAT
Statistics
Matches: 431, Mismatches: 117, Indels: 32
0.74 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 119 0.28
159 193 0.45
160 111 0.26
161 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCTGACTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCATGTCTAAGCCCCAGCCGGACCGAGGGTTGC
GGCAGGAGACCGACAGCACGCAGAAGG
Found at i:16426263 original size:26 final size:26
Alignment explanation
Indices: 16426233--16426285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16426223 GTTGACTTAG
16426233 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
16426259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16426285 G
1 G
16426286 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16426757 original size:159 final size:155
Alignment explanation
Indices: 16426259--16426758 Score: 418
Period size: 157 Copynumber: 3.2 Consensus size: 155
16426249 CTCAGTCTAA
* * *
16426259 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAAGATCG-C
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGAC
* * ** * *
16426322 AGCACACAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCAC
65 AGCACACA-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TTGC-CAGCGC
* * *
16426387 CCGCACGATCATTTCGTGGGATGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * **
16426416 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCTAA-GGTTATGGCAGCAGGGCCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACC-AAGGGTTGTGGTAGCAGGATCGA
* * * * * * *
16426479 TAACACGCAGAGGGGGATCAGGCAGATCCCCGGCTTGGGCATTATGCCTCT-CGGTTGCTCAGCG
64 CAGCA--CACAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGC-CAGCG
** ** *
16426543 CCCATACGCTCATTTCGA-GCATTGACTTAG
126 CCCGCACGCTCATTTC-ATGGGTTGGCTTAG
* * * * ** *
16426573 GTATATGGAGTTCATTCCCTCTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACA
* * * ** *
16426638 GCACATAGGGAAGAACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGATTGGCCAAGCGC
66 GCACACAGGG--GGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATT-GCC-AGCGC
*
16426703 CCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
16426732 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16426759 CATACAGAGT
Statistics
Matches: 260, Mismatches: 68, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
155 6 0.02
156 5 0.02
157 144 0.55
158 16 0.06
159 86 0.33
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACA
GCACACAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGCCAGCGCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:16426780 original size:499 final size:502
Alignment explanation
Indices: 16425756--16426788 Score: 1233
Period size: 499 Copynumber: 2.1 Consensus size: 502
16425746 GTTGAATTAG
* * * * * * *
16425756 GCATACAGAATTCATTCCTAGTCTAAGACCAGACTAGATCGAGGGCTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGCTGCGGTAGCAAGATCGACA
* * * ** **
16425821 GCACGCAGAGAGGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGTGCC
66 GCACACAGAGAGGACCGAGCCGATCCCCGACTTACGCATTCTCCCTCTCCGACCGACTGAGCACC
* * ** * *
16425886 CGGACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGATCATTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * * * * * *
16425951 ACTGAGGGTTGTGGCAGTGGGACCGACAGCACGCATAGGGGGACCGGGCCGATCCATGGCTTGCA
196 ACTGAAGGTTATGGCAGAGGGACCGACAACACGCAGAGGGGGACCAGGCAGATCCACGGCTTGCA
* * ** *
16426016 CATTATGCCTCTTCGGTCGACTCAGCTGCCTAAACGCTCATTTCGTGGGTTGACTTATGTATACG
261 CATTATGCCTCTTCGGTCGACTCAGCTGCCCAAACGCTCATTTCGAGCATTGACTTAGGTATACG
* * * *
16426081 GGGTTCATTCCCAGTCTAAGATCAGACCGCACGGAGGGTTGTGGCAGCAGGATCGATAGCACGCA
326 GAGTTCATTCCCACTCTAAGATCAGACCGCACCGAGGGTTGTGGCAGCAGGATCGACAGCAC-CA
* * * * * * * * *
16426146 GTAGGGGATCGAGCTGATCCTCGACTTGTGCATTCTACCTCTCTGATCGACTAAGCGCTCGCATG
390 GTAGGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCGATCGACCAAGCGCCCGCACG
16426211 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAA
455 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAA
* * *
16426259 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAAGATCG-CA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGCTGCGGTAGCAAGATCGACA
* * * *
16426323 GCACACAGGGGGGACC-AGGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGACC-AGCTGAGCA
66 GCACACAGAGAGGACCGA-GCCGATCCCCGACTTACGCATTCTCCCTCTCCGACCGA-CTGAGCA
16426386 CCCGCACGATCATTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGATCATTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
16426451 GGACCT-AAGGTTATGGCAGCAGGG-CCGATAACACGCAGAGGGGGATCAGGCAGATCCCCGGCT
194 GGA-CTGAAGGTTATGGCAG-AGGGACCGACAACACGCAGAGGGGGACCAGGCAGATCCACGGCT
** * *
16426514 TGGGCATTATGCCTC-TCGGTTG-CTCAGC-GCCCATACGCTCATTTCGAGCATTGACTTAGGTA
257 TGCACATTATGCCTCTTCGGTCGACTCAGCTGCCCAAACGCTCATTTCGAGCATTGACTTAGGTA
* * ** * *
16426576 TATGGAGTTCATTCCCTCTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCA
322 TACGGAGTTCATTCCCACTCTAAGATCAGACCGCACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * *
16426641 -CA-TAGGGAAGAACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGATTGGCCAAGCGCC
387 CCAGTAGGG--G-ACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCGATCGACCAAGCGCC
* * *
16426704 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAA
449 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCA-GTCTAA
*
16426758 GCATACAGAGTTCATTCCCAGTCTATGATCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA
16426789 AACTGGACTG
Statistics
Matches: 446, Mismatches: 76, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
496 5 0.01
497 2 0.00
498 3 0.01
499 198 0.44
500 6 0.01
501 8 0.02
502 167 0.37
503 57 0.13
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (502 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGCTGCGGTAGCAAGATCGACA
GCACACAGAGAGGACCGAGCCGATCCCCGACTTACGCATTCTCCCTCTCCGACCGACTGAGCACC
CGCACGATCATTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACTGAAGGTTATGGCAGAGGGACCGACAACACGCAGAGGGGGACCAGGCAGATCCACGGCTTGCA
CATTATGCCTCTTCGGTCGACTCAGCTGCCCAAACGCTCATTTCGAGCATTGACTTAGGTATACG
GAGTTCATTCCCACTCTAAGATCAGACCGCACCGAGGGTTGTGGCAGCAGGATCGACAGCACCAG
TAGGGGACCGAGCCGATCCCCAACTTGCGCATTCTACCTCTCCGATCGACCAAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAA
Found at i:16427112 original size:26 final size:26
Alignment explanation
Indices: 16427083--16427135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427073 GTTGACTTAG
*
16427083 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16427109 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16427135 G
1 G
16427136 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16427431 original size:341 final size:345
Alignment explanation
Indices: 16426633--16427450 Score: 820
Period size: 351 Copynumber: 2.4 Consensus size: 345
16426623 GTAGCAGGAT
* * * * * *
16426633 CGACAGCACATAG-GGAAGAACCGGGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGATTGGC-
1 CGACAGCACATAGAGG-GGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCG-TCGGCT
* *
16426696 CAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 C-AGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCA
* * * * *
16426761 TACAGAGTTCATTCCCAGTCTATGATCAAACTGGACTGACTGTTGCCGCAGCAGGATCAGTAGCA
126 TACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACGGCTGCCGCAGCAGGATCAGTAGCA
* * * * *
16426826 CGCAGGGGGGACCGAGCCAATCCCTGACAAGCGCATTCTGCCTCTTCGGCTGGCTAAGCGCCCGC
191 CGCAGGGGGGACCGAGCCAATCCCCGACAAGCGCATTCTGCCTCTTCGACCGGCTAAGCGACAGC
** * *
16426891 ACGTTCGTTTCATGGGTTGGCTTAGGCATTCGAAGTTCATTCCGTGTCTGAGCCCCCATCAGACT
256 ACGCCCGTTTCATGGGTTGGCTTAGGCATTCGAAGTTCATTCCATGTCTAAGCCCCCATCAGACT
* *
16426956 GAGGGTGCAGCAGGACCGACAGTGGCAT
321 GAGGGT--AGCAGGA-CGACAGTAGCAC
** * * *
16426984 CGGTAGCACATAGAGGGGGATCGGGCTGATCCCC-GACTTGCGCATTATGCCTTTCCGGTCGTCT
1 CGACAGCACATAGAGGGGGACCGGGCTGATCCCCAG-CTTGCGCATTATGCCTCTCC-GTCGGCT
* * ** *
16427048 GAGCGACCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT
64 CAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCAT
** * * * * *
16427113 ATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCAGGATCGGTAGCAT
127 ACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACGGCTGCCGCAGCAGGATCAGTAGCAC
** * ** * *
16427178 GCA-GGGGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGGTTGAGC-ACAGC
192 GCAGGGGGGACCGAGCCAATCCCCGACAAGCGCATTCTGCCTCTTC-GACCGGCTAAGCGACAGC
* * *
16427240 ACGCCCGTTTCATGGGTTGGCTTAGGC-TTAGGGAGTTCATTCCATGTCTAAG-CCCC-TGCTGG
256 ACGCCCGTTTCATGGGTTGGCTTAGGCATT-CGAAGTTCATTCCATGTCTAAGCCCCCAT-C-AG
*** *
16427302 A-TCGAGGGT-TTTGG-CTAC-G-AG-AC
318 ACT-GAGGGTAGCAGGACGACAGTAGCAC
* *
16427325 CGACAGCACGTAGAGGGGGACCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCAGTCGGCTC
1 CGACAGCACATAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCC-GTCGGCTC
* *
16427390 AGTGCTTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
65 AGCGC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
16427451 ATCAGACCGA
Statistics
Matches: 383, Mismatches: 71, Indels: 36
0.78 0.14 0.07
Matches are distributed among these distances:
340 1 0.00
341 106 0.28
342 3 0.01
343 1 0.00
344 3 0.01
346 2 0.01
347 1 0.00
348 8 0.02
349 56 0.15
350 41 0.11
351 155 0.40
352 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (345 bp):
CGACAGCACATAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGTCGGCTCA
GCGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAAACCGGACCGACGGCTGCCGCAGCAGGATCAGTAGCACGCAG
GGGGGACCGAGCCAATCCCCGACAAGCGCATTCTGCCTCTTCGACCGGCTAAGCGACAGCACGCC
CGTTTCATGGGTTGGCTTAGGCATTCGAAGTTCATTCCATGTCTAAGCCCCCATCAGACTGAGGG
TAGCAGGACGACAGTAGCAC
Found at i:16427808 original size:26 final size:26
Alignment explanation
Indices: 16427778--16427830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427768 GTTGACTTAG
* *
16427778 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
*
16427804 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
16427830 G
1 G
16427831 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:16428424 original size:159 final size:160
Alignment explanation
Indices: 16428253--16428612 Score: 397
Period size: 159 Copynumber: 2.3 Consensus size: 160
16428243 GCCCATTCCA
* * * * **
16428253 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAG
* * * * * *
16428317 TAGCGGGATCGGCAGCACG-TAGAAGGGGATCGAGTCGATCCCCGGCTT-GTGTATTATGCCTCT
66 TAGCAGGATCGACAGCACGCAAG-AGGGGATCGAGTCGATCCCCGGCTTACT-TATTATACCTAT
* * *
16428380 CTGGTCGGCTCAGCACCTGCACACTTGTTTCG
129 CCGGTCGGCTCAGCACCCGCACACTCGTTTCG
* *
16428412 TGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCA
* * * ** *
16428475 GTAGCAGGATTGATAGCACGCAAGGGGGGATCGAGTCGATCCTTGGCTTACTTATTCTACCTATC
65 GTAGCAGGATCGACAGCACGCAAGAGGGGATCGAGTCGATCCCCGGCTTACTTATTATACCTATC
* * *
16428540 CGGTCGGTTGAGCGCCCGCACACTCGTTTCG
130 CGGTCGGCTCAGCACCCGCACACTCGTTTCG
* * *
16428571 TGGGTCGGCTTAAGCATATGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16428613 TACAAAGTTC
Statistics
Matches: 165, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 4 0.02
159 156 0.95
160 5 0.03
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (160 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCAG
TAGCAGGATCGACAGCACGCAAGAGGGGATCGAGTCGATCCCCGGCTTACTTATTATACCTATCC
GGTCGGCTCAGCACCCGCACACTCGTTTCG
Found at i:16428810 original size:26 final size:26
Alignment explanation
Indices: 16428780--16428832 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16428770 GTTGGCTTAG
16428780 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16428806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16428832 G
1 G
16428833 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16430381 original size:26 final size:26
Alignment explanation
Indices: 16430345--16430397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16430335 GTTGGCTTAG
16430345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16430371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16430397 G
1 G
16430398 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16430746 original size:356 final size:343
Alignment explanation
Indices: 16429965--16430754 Score: 850
Period size: 343 Copynumber: 2.3 Consensus size: 343
16429955 CTCTGGTCGG
* * * *
16429965 CTGAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAG
1 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* * * ** * **
16430029 CATGCAAAGTTCATTCCTAGTCTAAGATCGGACTTGATCGAGGGTTGCGGCAGCAGGATCGGTAG
65 CATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCAGCAGGATCAATAG
* ** * *
16430094 CACGCAGGGGGGATCGAGCCGATCTTCGGTTTGCGCCATTCTACCTCTCCGACCGGCTGAGCACC
130 CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCCATTCTACCTCTCCGACCGGCTAAGCACC
* * * * *
16430159 CACACGCCCGTTTCGTGGGTTGTCTAAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCATCCGG
195 CACACGCCCATTTCATAGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGG
* * * *
16430224 ACTGAGGGTTGTGGCAGCGGGATCGCAGGACGCAGAGGGGTATCGGGCCGATCCCCAGCTTGTGA
260 ACTGAGGGTTGTGGCAGCAGGATCGCAGGACGCAGAGGGGGAACGGGCCGATCCCCAGCTTGCGA
* * **
16430289 ATTTTGCCTGTCCGACCGG
325 ATTATGCCTCTCCGACCAA
* *
16430308 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*** *
16430373 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGTAGCAGGATCAATAGC
66 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCAGCAGGATCAATAGC
* * * ***
16430438 ATGCAGGGAGGGACCTG-GTCGATCCCCGGCTTGCG-CATTCTGCCTCTCCGGTTGGCTAAGCAC
131 ACGCAGGG-GGGACC-GAGCCGATCCCCGGCTTGCGCCATTCTACCTCTCCGACCGGCTAAGCAC
* * * * * * *
16430501 TCGCACGCTCATTTCATAGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCTG
194 CCACACGCCCATTTCATAGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCG
* * * *
16430566 GACTGAGGGTTGTGGTAGTAGGATCGGTAGCATGATCGGCAGCATGTAGAGGGAGAACGGGCTGA
259 GACTGAGGGTTGTGGCAGCAGGATC----GCA-G---GAC-GCA-G-AG-GGG-GAACGGGCCGA
* * *
16430631 TCCCC-GACTTGCGCATTATGCCTCTCCGGCTAA
311 TCCCCAG-CTTGCGAATTATGCCTCTCCGACCAA
* *
16430664 CTGAGCGTCTGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
16430729 GTACATAGTTCATTCCCAATCTAAGA
66 ATACAAAGTTCATTCCCAGTCTAAGA
16430755 GTTTGAGCCA
Statistics
Matches: 365, Mismatches: 65, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
342 3 0.01
343 213 0.58
344 19 0.05
345 1 0.00
347 3 0.01
348 1 0.00
351 2 0.01
352 3 0.01
353 1 0.00
354 2 0.01
355 4 0.01
356 113 0.31
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGCAGCAGGATCAATAGC
ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCCATTCTACCTCTCCGACCGGCTAAGCACCC
ACACGCCCATTTCATAGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCGGA
CTGAGGGTTGTGGCAGCAGGATCGCAGGACGCAGAGGGGGAACGGGCCGATCCCCAGCTTGCGAA
TTATGCCTCTCCGACCAA
Found at i:16431471 original size:26 final size:26
Alignment explanation
Indices: 16431423--16431473 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16431413 TGACTTAGGC
* *
16431423 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCAAATCTAAGT
*
16431449 ATACGGAGTTCATTCCAAATCTAAG
1 ATACGGAGTTCATCCCAAATCTAAG
16431474 ATCAAATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCAAATCTAAGT
Found at i:16431811 original size:159 final size:158
Alignment explanation
Indices: 16431646--16431948 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
16431636 AGCCGAACCG
* * ** *
16431646 AGGGTTGTGACAGCGGGACCGATAGCACGCAGAGGGGGA-CTGGGTCGATCCTTGGCTTGCGCAT
1 AGGGTTGTGACAGCAGGACCGACAGCACGCAG-GGGGGATC-AAGTCGATCCCTGGCTTGCGCAT
* * ** * *
16431710 TATGCCTCTTCGACCGGCTT-AGTGCCTGCGCGCTCGTTTCGTGGGTTAACTTAGGCATACGGAG
64 TATACCTCTCCGACCGG-TTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAG
*
16431774 TTTATTCCCA-GTCTAAGATCGGATCAGATCA
128 TTCATT-CCATGTCTAAGATCGGATCAGATCA
** * * * *
16431805 AGGGTTGTGGTAGCAGGATCGACAGCACGTAGGTGGGATCAAGTCGATCCCTGGCTTGCGCATTC
1 AGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGATCAAGTCGATCCCTGGCTTGCGCATTA
* ** *
16431870 TACCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTTC
66 TACCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTC
16431935 ATTCCATGTCTAAG
131 ATTCCATGTCTAAG
16431949 CATACGGAGT
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.04
158 87 0.73
159 27 0.23
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.26
Consensus pattern (158 bp):
AGGGTTGTGACAGCAGGACCGACAGCACGCAGGGGGGATCAAGTCGATCCCTGGCTTGCGCATTA
TACCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGATCGGATCAGATCA
Found at i:16432469 original size:354 final size:359
Alignment explanation
Indices: 16431872--16432647 Score: 869
Period size: 354 Copynumber: 2.2 Consensus size: 359
16431862 GCGCATTCTA
* * *
16431872 CCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTTCAT
1 CCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
16431937 TCCATGTCTAAGCATACGGAGTTCATTCCCATCTAAGATTGGACCGGACCGAGGGTTGCAACAGC
66 TCCATGTCTAAGCATACGAAGTTCATTCCCATCTAAGATCGGACCAGACCGAAGGTTG--ACAG-
* * * *
16432002 CAGACCAGTAGCAGGATCGCAGCACGAAGGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTTTG
128 C-GA-CAGTA--AGGATCGCAGCACGAAGGGAGGGACCGGGTCAATCCCCAGCCTGCGCATTCTG
*
16432067 CCTCTCCGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
189 CCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
16432132 TCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAAATTGGCAGCA
254 TCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAAATTGGCAGCA
16432197 CGCAGAGGGGGACTGGGCTGATCCCCGGCTTACAAGTTATG
319 CGCAGAGGGGGACTGGGCTGATCCCCGGCTTACAAGTTATG
* * * *
16432238 CCTCTCCGGTCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
16432303 CTCTA-GTCTAATCATACGAAGTTCTTTCCCAGTGTAAGATCGGATCAGATCGAAGGTTG-C-G-
66 -TCCATGTCTAAGCATACGAAGTTCATTCCCA-TCTAAGATCGGACCAGACCGAAGGTTGACAGC
*
16432364 G-CAGT-AGGATCGACAGCACGCAGGG-GGG-CCGGGTCAATCCCCAGCCTGCGCATTCTGCCTC
129 GACAGTAAGGATCG-CAGCACGAAGGGAGGGACCGGGTCAATCCCCAGCCTGCGCATTCTGCCTC
* ** * * *
16432425 TCCGGTCGGCTGAGTGCCCGCACG-TCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
193 TCCGGCCGGCTGAGCACCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
16432489 ATGTCTAAGCCCCAGTCAGACCGAGGGTTGT-G--GCA-G-CT----G-G--ATCGGCAGCACGC
257 ATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAAATTGGCAGCACGC
* * * ** *
16432542 AGAGGGGAACCGGG-TCGAGCCCTAGCTTGCACA-TTATG
322 AGAGGGGGACTGGGCT-GATCCCCGGCTTACA-AGTTATG
* * * * * * * *
16432580 CCTCTTCGACCAGCTCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
16432645 TCC
66 TCC
16432648 CAATCTAAGA
Statistics
Matches: 356, Mismatches: 48, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
341 3 0.01
342 95 0.27
343 1 0.00
344 1 0.00
345 1 0.00
349 2 0.01
350 1 0.00
351 3 0.01
353 3 0.01
354 113 0.32
355 10 0.03
356 11 0.03
358 4 0.01
360 1 0.00
363 1 0.00
364 1 0.00
366 81 0.23
367 24 0.07
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (359 bp):
CCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACGAAGTTCATTCCCATCTAAGATCGGACCAGACCGAAGGTTGACAGCGA
CAGTAAGGATCGCAGCACGAAGGGAGGGACCGGGTCAATCCCCAGCCTGCGCATTCTGCCTCTCC
GGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAAATTGGCAGCACGCAGAG
GGGGACTGGGCTGATCCCCGGCTTACAAGTTATG
Found at i:16432774 original size:159 final size:156
Alignment explanation
Indices: 16432315--16432814 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 156
16432305 CTAGTCTAAT
* * * * *
16432315 CATACGAAGTTCTTTCCCAGTGTAAGATCGGATCAGATCGAAGGTTGCGGCAGTAGGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGA-CCAAGGTTGCGGCAGCAGGATCGACAG
* * * *
16432380 CACGCA-GGGGGGCCGGGTCAATCCCCAGCCTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
65 CACGCAGGGGGGGCCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCC
16432444 GCACG-TCTGTTTCGTGGGTTGGCTTAGG
130 GCACGCTC-GTTTC-TGGGTTGGCTTAGG
* * ** * * * *
16432472 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCTGGATCGGC
1 CATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACC-AAGGTTGCGGCAGCAGGATCGAC
** * * * * ** * *
16432535 AGCACGCAGAGGGGAACCGGGTCGAGCCCTAGCTTGCACATTATGCCTCT-TCGACCAGCTCAGC
63 AGCACGCAG-GGGGGGCCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGC
* *
16432599 GCCCGCACGCTTGTTTCATGGGTTGACTTAGG
126 GCCCGCACGCTCGTTTC-TGGGTTGGCTTAGG
* * * *
16432631 CATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCAATGGTTGCAGCAGCAGGATCAACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCAA-GGTTGCGGCAGCAGGATCGACAG
* * * * * *
16432696 CACGTAGGGGGGGCCCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAACGCT
65 CACGCAGGGGGGG-CCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
* *
16432761 CGCATGCTCGTTTCTTGGTTGGCTTAGG
129 CGCACGCTCGTTTCTGGGTTGGCTTAGG
* *
16432789 CGTACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
16432815 CATATGGAGT
Statistics
Matches: 265, Mismatches: 65, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 4 0.02
157 52 0.20
158 41 0.15
159 163 0.62
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGGCCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCG
CACGCTCGTTTCTGGGTTGGCTTAGG
Found at i:16433021 original size:26 final size:26
Alignment explanation
Indices: 16432985--16433053 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
16432975 GTTGGCTTAG
16432985 GCATACGGAGATCATTCCATGTCTAA
1 GCATACGGAGATCATTCCATGTCTAA
16433011 GCATACGGAGATCATTCCATGTCTAA
1 GCATACGGAGATCATTCCATGTCTAA
* *
16433037 GCATACAGAGTTCATTC
1 GCATACGGAGATCATTC
16433054 GTAGTCTAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCATGTCTAA
Found at i:16434416 original size:26 final size:26
Alignment explanation
Indices: 16434380--16434432 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16434370 GTTGGCTTAG
16434380 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16434406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16434432 G
1 G
16434433 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16434773 original size:171 final size:170
Alignment explanation
Indices: 16434406--16434775 Score: 386
Period size: 171 Copynumber: 2.2 Consensus size: 170
16434396 CCATGTCTAA
* *
16434406 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGACATCAGGACCAGC
1 GCATACGGAGTTCA-TCCCAGTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACCAGC
* ** * ** * * *
16434470 AGTAGGATAGACAGCACGTAAGAGGAATCGGGCTGATCCCCGGCTTGCATATTCTTCCTCTCAGG
65 AGCAGGATAGACAGCACACAAGAGGAACCGGGCTGATCCCCAACTTGCACATTCTGCCTCTCAGA
*
16434535 CCAGCTGAGCACCCGCACGCTTGTTTTATGGGTTAGCTTAG
130 CCAGCTGAGCACCCGCACGCTCGTTTTATGGGTTAGCTTAG
* * * ** * *
16434576 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCATGACCGGC
1 GCATACGGAGTTCATCCCA-GTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACCAGC
* * * * * * *
16434640 AGCAGGATCGACAGCACACAGAGGGGGACCGGGCTGATCCCTAACTTGTACATTGTGCCTCTCCG
65 AGCAGGATAGACAGCACACA-AGAGGAACCGGGCTGATCCCCAACTTGCACATTCTGCCTCTCAG
* * * * * *
16434705 ACCGGCTGAGCGCTCGCATGCTCGTTTTGTGGGTT-GATTTAG
129 ACCAGCTGAGCACCCGCACGCTCGTTTTATGGGTTAG-CTTAG
16434747 GCATACGGAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-CCCAGTCTAAGCA
16434776 TAAGGAGTTC
Statistics
Matches: 161, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
169 4 0.02
170 63 0.39
171 91 0.57
172 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (170 bp):
GCATACGGAGTTCATCCCAGTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACCAGCA
GCAGGATAGACAGCACACAAGAGGAACCGGGCTGATCCCCAACTTGCACATTCTGCCTCTCAGAC
CAGCTGAGCACCCGCACGCTCGTTTTATGGGTTAGCTTAG
Found at i:16434776 original size:26 final size:26
Alignment explanation
Indices: 16434747--16434799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16434737 GTTGATTTAG
*
16434747 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
16434773 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
16434799 G
1 G
16434800 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:16435092 original size:158 final size:158
Alignment explanation
Indices: 16434925--16435431 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 158
16434915 CCAAGCGTTA
* * *
16434925 GCTTGGGCATACAGAGTTCATTCCATGTCTAAGTTCAGACTGGATCGAGGGTTGCGGCAGCAGGA
1 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGA
* ** * * * * *
16434990 TGGGTAGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGACTG
66 TCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTG
* * *
16435055 AGCACCCGCATGCCCGTTTTATGGGTTG
131 AGCACCCGCACGCTCGTTTTGTGGGTTG
** ** * *
16435083 GCTTAGGCATAGGGAGTTCATTCC-TGTCTAAGCCCCAG-CCGGATCGAGGGTT-CTGGTAGCGG
1 GCTTAGGCATACAGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAGGGTTGC-GGTAGCAG
* * * * * *
16435145 GATCGACAGCACACAGAGGGCGACCGGGCCAATCCTCGGCTTACGCATTATGCCTC-CCTGGTCG
64 GATCGACAGCACGCAG-GGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCC-GATCG
* * ** *
16435209 GCTCAGCACCTGCACGCTTATTTTGTGAGTTG
127 GCTGAGCACCCGCACGCTCGTTTTGTGGGTTG
* * *
16435241 ACTTAGGCATAC-GAAGTTCATTCCCA-GTCTAAGATCAGACTGGATTGAGGGTTGCGGTAGTAG
1 GCTTAGGCATACAG-AGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAG
* * * * * *
16435304 GATCGACAGCACGCAAGGGGGACCGGGCCGGTCCCCGACTTACGCATTCTACCTCTCTGATCGGT
64 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGC
* ** *
16435369 TGGGTGCCCGCACGCTCGTTTCGTGGGTTG
129 TGAGCACCCGCACGCTCGTTTTGTGGGTTG
16435399 GCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCTTAGGCATACAGAGTTCATTCCATGTCTAAG
16435432 CAAATGGAGT
Statistics
Matches: 277, Mismatches: 60, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 45 0.16
158 187 0.68
159 43 0.16
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGA
TCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTG
AGCACCCGCACGCTCGTTTTGTGGGTTG
Found at i:16436136 original size:159 final size:159
Alignment explanation
Indices: 16435834--16436241 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 159
16435824 CCGATCTCTA
* * * * *
16435834 GCTTGCGCATTCTTCCTCTCCGGCCGGTTGAGCGCCCTCACGCCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
* * * * * * *
16435899 CATAGGGAGTTCATTCCACGTCTAAACCCTAGCCAGATTGAGAGTTGTGGCAATAGAATCGACAG
66 CATAGAGAGTTCATTCCACGTCTAAACCCCAGCCAGATCGAGAGTTATGACAACAGAACCGACAG
* * * * * *
16435964 CATGTAGAGGGGGATCGGGTCGATCCCCG
131 CACGCAGAAGGGGACCGGGCCAATCCCCG
* * * * *
16435993 GCTTGCGCATTCTGACTCTCTGGCCGGCTGAGCGTCGGCATGCCCATTTCGTTGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
* ** * * * * **
16436058 CATAGAGAGTTTATTCCTTGTCTAAGCCCCAGCC-GAATCGAGGGTTATGACAGCAGGACCGGTA
66 CATAGAGAGTTCATTCCACGTCTAAACCCCAGCCAG-ATCGAGAGTTATGACAACAGAACCGACA
*
16436122 GCACGCAGAAGGGGACCGGGCCAATCCTCG
130 GCACGCAGAAGGGGACCGGGCCAATCCCCG
* * ** * * * * **
16436152 ACTTGCGCATTATGCCTCTCTGATCGGCTCAACGCCCGCACGCTCATTCCGTGGGTTGAATTAGG
1 GCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
16436217 CATACG-GAGTTCATTCC-CAGTCTAA
66 CATA-GAGAGTTCATTCCAC-GTCTAA
16436242 GATTGGACTG
Statistics
Matches: 196, Mismatches: 50, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
158 1 0.01
159 194 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
GCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
CATAGAGAGTTCATTCCACGTCTAAACCCCAGCCAGATCGAGAGTTATGACAACAGAACCGACAG
CACGCAGAAGGGGACCGGGCCAATCCCCG
Found at i:16436409 original size:26 final size:26
Alignment explanation
Indices: 16436373--16436425 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16436363 GTTGGCTTAG
16436373 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16436399 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16436425 G
1 G
16436426 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16436777 original size:26 final size:26
Alignment explanation
Indices: 16436741--16436792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16436731 GTTGACTTAG
16436741 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16436767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16436793 CATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16439168 original size:26 final size:26
Alignment explanation
Indices: 16439118--16439170 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16439108 GTTGACTTAG
*
16439118 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
*
16439144 GCATATGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
16439170 G
1 G
16439171 ATCTGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Found at i:16439506 original size:159 final size:158
Alignment explanation
Indices: 16439144--16439645 Score: 402
Period size: 158 Copynumber: 3.2 Consensus size: 158
16439134 TCCAGTCTAA
* * * ** * *
16439144 GCATATGGAGTTCATTCCCAATCTAAGATCTGACTGGACCGAGGGTTGTGGCAGCAGGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCAGTA
* * * * *
16439209 GCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTTCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCC
* * *
16439274 TGCATGCGCGTTTCATGGGTTGGCTTAG
131 CGCACGCGCGTTTCATGGGTTGACTTAG
* * ** * * * *
16439302 GTATAGGGAGTTCATT-CCATGTCTAAGCGCCAG-TCAGATCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCAG
* * *** *
16439365 TAAG-ACGTAGAGGGGGACTGGGTTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCAGCTCAG
64 T-AGCACGCAG-GGGGGACCGGACCGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAG
* * *
16439429 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCGCGTTTCATGGGTTGACTTAG
* * * * **
16439461 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCAGTA
** * * * * * * * * * * * *
16439526 GCACAAAGGAGGGATCGGATCGATCCCTGGCTTGCCCGTTCTGCCTTTCCTG-TCGGCTGAGCGC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTATGCCTCTCC-GACCAGCTCAGCGC
* * * * *
16439590 CTGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCGCGTTTCATGGGTTGACTTAG
16439619 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16439646 CGTACAGAGT
Statistics
Matches: 270, Mismatches: 65, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 141 0.52
159 120 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGACCAGTA
GCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGCGCC
CGCACGCGCGTTTCATGGGTTGACTTAG
Found at i:16440502 original size:157 final size:157
Alignment explanation
Indices: 16440027--16440525 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 157
16440017 CAGGCTAAGA
* * * *
16440027 ATACGGAGTTCATTCCCTGTCTAAGATCGAACCGGAA-CGAGGGTTGCGACAGTAGGATCGACAG
1 ATACGGAGTTCATT-CCAGTCTAAGATCGAACC-AAATCGAGGGTTTCGGCAGTAGGATCGACAG
* * * * *
16440091 CACGTA-GGGGGACTGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCC
64 CACGCAGGGGGGACCGGGCCGATCCCCAGACTTGCG-ATTCTGCCTCTCTGGCCGGCTGAGTGCC
16440154 CGCACGC-CTGTTTCGTGGGTTGGCTTAGGC
128 CGCACGCTC-GTTTCGTGGGTTGGCTTAGGC
* * ** * ** * * *
16440184 TTA-GTGAGTTCATTCAATGTCTAAGCCCTAGTCAAATCGAGGGTTGT-GGCAGCAAGA-CTAGC
1 ATACG-GAGTTCATTCCA-GTCTAAGATCGAACCAAATCGAGGGTT-TCGGCAGTAGGATCGA-C
* * * * * * *
16440246 AGCATGCAGAGGGGGATCGGGCCGATCCCCAGCCTGTAC-ATTATGCCTCT-TCGACCGGCTCAG
62 AGCACGCAG-GGGGGACCGGGCCGATCCCCAGACT-TGCGATTCTGCCTCTCT-GGCCGGCTGAG
* * * *
16440309 TGTCCGCACGCTCGTTTCATGGGTTGACTTATGC
124 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
16440343 ATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAATCGAGGGTTTCGGTAGTAGGATCGACAGC
1 ATACGGAGTTCATT-CCAGTCTAAGATCGAACCAAATCGAGGGTTTCGGCAGTAGGATCGACAGC
* ** *
16440408 ACACAGGGGGGACCGGGCTAATCCCCAG-CTTGCGATTCTGCCTCTCTGGGCGGCTGAGCT-CCC
65 ACGCAGGGGGGACCGGGCCGATCCCCAGACTTGCGATTCTGCCTCTCTGGCCGGCTGAG-TGCCC
*
16440471 GCACGCTCATTTCGTGGGTTGGCTTAGGC
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
16440500 ATACGGAGTTCATTCCAGTCTAAGAT
1 ATACGGAGTTCATTCCAGTCTAAGAT
16440526 TTTGAGCCAC
Statistics
Matches: 266, Mismatches: 58, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
156 20 0.08
157 103 0.39
158 22 0.08
159 111 0.42
160 8 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCAGTCTAAGATCGAACCAAATCGAGGGTTTCGGCAGTAGGATCGACAGCA
CGCAGGGGGGACCGGGCCGATCCCCAGACTTGCGATTCTGCCTCTCTGGCCGGCTGAGTGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:16447422 original size:158 final size:156
Alignment explanation
Indices: 16446967--16447452 Score: 530
Period size: 158 Copynumber: 3.1 Consensus size: 156
16446957 TAAGCAGACA
* *
16446967 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG-A
* *
16447032 GGGGGGACCGGGCTGATCCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACAC
65 -GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACAC
* * * *
16447097 CCGTTTCATGGATTGGCTTAGGCATAGG
129 TCGTTTCGTGGGTTGGCTTAGGCATACG
** * * * ** *
16447125 GAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAAGGTTGTGGCAGTGGGATCGACAGGATG
1 GAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCA--
* * * * * * * *
16447188 CAGAGGGGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTTTCC-AACAGGCTCAACGCCTAC
62 C-GAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCAC
* * *
16447252 ACGCTCATTTCGTGGTGTTGACTTAGGCATACG
125 ACACTCGTTTCGTGG-GTTGGCTTAGGCATACG
* * *
16447285 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATCAACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG-A
* *
16447350 GGGGGACCGGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACAC
65 GGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACAC
* * *
16447414 TCGTTTCGTAGGATGGCTTAGGCATATG
129 TCGTTTCGTGGGTTGGCTTAGGCATACG
16447442 GAGTTCATTCC
1 GAGTTCATTCC
16447453 ATGTCCAAGC
Statistics
Matches: 262, Mismatches: 54, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 30 0.11
158 106 0.40
159 62 0.24
160 60 0.23
161 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGAG
GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACACTC
GTTTCGTGGGTTGGCTTAGGCATACG
Found at i:16447618 original size:185 final size:183
Alignment explanation
Indices: 16447278--16447647 Score: 470
Period size: 185 Copynumber: 2.0 Consensus size: 183
16447268 GTTGACTTAG
* * * ** *
16447278 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCAACA
* * * **
16447343 GCACGTAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
66 GCACGTAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGGCTGAGCGCCC
* * **
16447408 GCACACTCGTTTCGTAGGATGGCTTAGGCATATGGAGTTCATTCCATGTCCAA
131 ACACACTCATTTCGTAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCCAA
* * * * *
16447461 GCATACAGAGTTCATTCCCAGTCGAAGATCAGACCGGATCGAGGGTTGCTACAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCAACA
* * *
16447526 GCACGCATGGGGGGACTGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCAATCGGCTGAGCGC
66 GCACG--TAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGGCTGAGCGC
** * * *
16447591 CCACAGGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCACACACTCATTTCGTAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCCAA
16447646 GC
1 GC
16447648 CCCAGTCGGA
Statistics
Matches: 157, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 59 0.38
185 98 0.62
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCAACA
GCACGTAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAATCGGCTGAGCGCCC
ACACACTCATTTCGTAGGATGGCTTAGGCATACAGAGTTCATTCCATGTCCAA
Found at i:16447997 original size:348 final size:348
Alignment explanation
Indices: 16447353--16448381 Score: 1061
Period size: 348 Copynumber: 2.9 Consensus size: 348
16447343 GCACGTAGGG
* * * * *
16447353 GGACCGGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCG
1 GGACCGAGCTGATCCTC-GGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCG
* * * * * *
16447417 TTTCGTAGGATGGCTTAGGCATATGGAGTTCATTCCATGTCCAAGCATACAGAGTTCATTCCCAG
65 TTTCGTGGGTTGACTTAGGCATA-CGAGTTCATCCCA-GTCTAAGCATACAGAGTTCATTCCCAG
* * * ** * *
16447482 TCGAAGATCAGACCGGATCGAGGGTTGCTACAGCAAGATCGATAGCACGCATGGGGGGACTGGGC
128 TCTAAGATCAGACCAGA-C-ACGGTTGCGGCAGCAGGATCGATAGCACGCA-GGGGGGACCGGGC
* * * * *
16447547 CGATCCCCGACTTACGCATTTTGCCTCTCCAAT-CGGCTGAGCGCCCACAGGCTCATTTCGTGGG
190 CGATCCCCG-CTTGCGCATTCTGCCTCT-CAATCCGGCTGAGCG-CCGCAGGCACGTTTCGTGGG
** *
16447611 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTTGTGGTAGCA
252 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-AAGGGTTGTGGCAGCA
* *
16447676 GGACC-GACAGTGGGATCGACAGCACACAGAAGG-
316 GGACCAG-CAGCGAGATCGACAGCACACAG-AGGA
* * * *
16447709 GGATCGGGCTGATCTTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGT
1 GGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGT
* * *
16447774 TTTGTGGGTTGACTTAGGCATACGAGTTCATCACCAGTCTAAGCATACAAAGTTCATTCCTAGTC
66 TTCGTGGGTTGACTTAGGCATACGAGTTCATC-CCAGTCTAAGCATACAGAGTTCATTCCCAGTC
** ** * * *
16447839 TAAGAATTTGACC-GA-A-GGTTGCGGCA-CAGGATCGGCAGCACGCGGGGGGGACCAGGCCAAT
130 TAAG-ATCAGACCAGACACGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGAT
* * * * **
16447900 CCCCGGCTTGCGCATTCTGCCTCTCTATCCGGCTGAGCGTCGTAGGCCCGTTTTATGGGTTGGCT
194 CCCC-GCTTGCGCATTCTGCCTCTCAATCCGGCTGAGCGCCGCAGGCACGTTTCGTGGGTTGGCT
*
16447965 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACAGAGGGTTGTGGCAGCAGGACCA
258 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACA-AGGGTTGTGGCAGCAGGACCA
**
16448030 GCAGCGAGATCGACAGCACGTAGAGGA
322 GCAGCGAGATCGACAGCACACAGAGGA
*
16448057 GGACCGAGCTGATCCTCAGCTTGTGCATTATGCCTCTTCGGTCGGCCTCTCCGATCGGCTGAGCG
1 GGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTC-TC---C-G-------G-TCGGCTGAGCG
* *
16448122 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACCGA
53 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCC-AGTCTAAGCATACAGA
* *
16448187 GTTCATTCCCAGTCTAAGATCAGACCAGACTGACGGTTGTGGCAGCAGGATCGATAGCACGTAGG
116 GTTCATTCCCAGTCTAAGATCAGACCAGAC--ACGGTTGCGGCAGCAGGATCGATAGCACGCAGG
* * * * * * * *
16448252 GGGGATCGGGCCGATCCCC-CCTGCACATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCACG
179 GGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCAATCCGGCTGAGC-GCCGCAGGCACG
* * * *
16448316 TTTCGTGGGTTGG-TTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCTAGTCAGACCGAGGGTT
243 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAAGGGTT
16448380 GT
307 GT
16448382 AATAGTGGGA
Statistics
Matches: 559, Mismatches: 83, Indels: 53
0.80 0.12 0.08
Matches are distributed among these distances:
347 4 0.01
348 130 0.23
349 47 0.08
350 15 0.03
351 8 0.01
352 2 0.00
353 1 0.00
355 39 0.07
356 83 0.15
357 1 0.00
360 1 0.00
361 52 0.09
362 42 0.08
365 74 0.13
366 28 0.05
367 32 0.06
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (348 bp):
GGACCGAGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGAGTTCATCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
AAGATCAGACCAGACACGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCC
CCGCTTGCGCATTCTGCCTCTCAATCCGGCTGAGCGCCGCAGGCACGTTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAAGGGTTGTGGCAGCAGGACCAGCAG
CGAGATCGACAGCACACAGAGGA
Found at i:16448188 original size:26 final size:26
Alignment explanation
Indices: 16448152--16448204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16448142 GTTGACTTAG
*
16448152 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACCGAGTTCATTCCC-AGTCTAA
16448178 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
16448204 G
1 G
16448205 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:16448675 original size:159 final size:160
Alignment explanation
Indices: 16448273--16448678 Score: 388
Period size: 159 Copynumber: 2.6 Consensus size: 160
16448263 CGATCCCCCC
* * * *
16448273 TGCACATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCACGTTTCGTGGGTTGG-TTAGGCAT
1 TGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * * * **
16448337 AGGGAGTTCATTCCATGTCTGAG-CCCTAGTCAGACCGAGGGTTGTAATAGTGGGACCGACAGCA
66 ACGGAGTTCATTCCATGTCTAAGACCCGAGCCAGACCGAGGGTTGCAATAGCAGGACCGACAGCA
* ** *
16448401 CGCAGAGAGGGACCGGGTTGATCCTTGACT
131 CACAGAGAGGGACCGGGTCAATCCCTGACT
* * * * * * * * * * **
16448431 TGCGCATTGTGCCTCTTCGGCTGGGTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTCTGCAT
1 TGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * * * * * *
16448496 ACAGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCAGTAGCAGGATCGATAGC
66 ACGGAGTTCATT-CCATGTCTAAGACCCGAGCCAGACCGAGGGTTGCAATAGCAGGACCGACAGC
* * * *
16448559 ACACAGGGGGGGACTGGGTCAATCCCTGGCT
130 ACACAGAGAGGGACCGGGTCAATCCCTGACT
* * *
16448590 TGCACATTCTACTTCTCCGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT
1 TGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
16448655 ACGGAGTTCATTCAATGTCTAAGA
66 ACGGAGTTCATTCCATGTCTAAGA
16448679 ATACAGAGTT
Statistics
Matches: 188, Mismatches: 56, Indels: 7
0.75 0.22 0.03
Matches are distributed among these distances:
158 44 0.23
159 139 0.74
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (160 bp):
TGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGACCCGAGCCAGACCGAGGGTTGCAATAGCAGGACCGACAGCA
CACAGAGAGGGACCGGGTCAATCCCTGACT
Found at i:16449655 original size:158 final size:159
Alignment explanation
Indices: 16449278--16449676 Score: 396
Period size: 158 Copynumber: 2.5 Consensus size: 159
16449268 CCCGTTCACC
* * * *
16449278 CGTTTCGA-GGGTTGGCTTAGGTATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
1 CGTTTC-ATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * * * **
16449342 GTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCAAGCCGATCCTTGGTTTACGCATTATG
65 GTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCAAGCCAATCCTCAGTTTACGCATTATG
***
16449407 CCTCTCCGGCTGGCTCAGCGCCTGTACGCT
130 CCTCTCCGGCTGGCTCAGCGCCCACACGCT
* * * ** *
16449437 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCTTTCCCA-GTCTAAG-ATCAG-AATGGACCGA
1 CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAGCCA--GACCGA
* * *** * *
16449499 GGGTTGTGCCAGCAGGATCGATAGCACGCAG-GAGGGACTGGGTCAATCCTCAGTTTACGCATTC
63 GGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCAAGCCAATCCTCAGTTTACGCATTA
* * *
16449563 TGCCTTTCC-GATCGGCTGAGCGCCCACACGCT
128 TGCCTCTCCGGCT-GGCTCAGCGCCCACACGCT
** * *
16449595 CGTTTTGTTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGG
1 CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
*
16449660 TTGTGGTAGCAGGATCG
66 TTGTGGCAGCAGGATCG
16449677 GTAGGGGGAT
Statistics
Matches: 191, Mismatches: 41, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.03
158 111 0.58
159 71 0.37
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAGCAGGATCGACAGCACGCAGAGAGGGACCAAGCCAATCCTCAGTTTACGCATTATGC
CTCTCCGGCTGGCTCAGCGCCCACACGCT
Found at i:16450323 original size:158 final size:157
Alignment explanation
Indices: 16449895--16450326 Score: 388
Period size: 159 Copynumber: 2.7 Consensus size: 157
16449885 GATAGCATGC
* * * * *
16449895 AGGGGGGACCGGGTCGATCCCCAACTTGCACATTCTGCCTCTCCGA-TCGGTTGAGTGCCTACAC
1 AGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACT-GGCTGAGTGCCTACAC
* * * * *
16449959 G-TCCTTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCAGATCG
65 GCT-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCCCCAGTCAGACCA
** * *
16450023 AGGGTTGTGGCAGCGAGACCGACAGCACGA
128 AGGGTTACGACAGCAAGACCGACAGCACGA
* * * * * ** * * *
16450053 AGAGGGGGATCAGGCCGATCCTCGGCTTACGCATTATGCCTCTTAGGCCGGCTCAGTG-CTCACA
1 AG-GGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCT-ACA
* * ** * ** *
16450117 CGCTCATTTCGTGGTTTAACTTATGCATACGGAGTTCATTGCCAGTCTAAG-ATCGGATC-GAAC
64 CGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAG-TCAG-AC
** *
16450180 CAAGGGTTACGACAGCAAGATTGACAGCACGT
126 CAAGGGTTACGACAGCAAGACCGACAGCACGA
* **
16450212 AGGGGGGACCAGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGTGCCTGTACG
1 AGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCTACACG
* *
16450277 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGC
66 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
16450327 ATACGGAGTT
Statistics
Matches: 209, Mismatches: 55, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 93 0.44
159 111 0.53
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
AGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCTACACG
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGTCAGACCAAGG
GTTACGACAGCAAGACCGACAGCACGA
Found at i:16450348 original size:26 final size:26
Alignment explanation
Indices: 16450299--16450351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16450289 GTTGGCTTAG
*
16450299 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16450325 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16450351 G
1 G
16450352 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16451050 original size:170 final size:168
Alignment explanation
Indices: 16450751--16451067 Score: 390
Period size: 170 Copynumber: 1.9 Consensus size: 168
16450741 CAGCACGCAG
* * * **
16450751 AGGGGGATTGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
1 AGGGGGATTGGGCTAATCCCCGGCTTGTGCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGC
* * *
16450816 TCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTTCCAGTCTAAGATCAGACCAAACCGAGG
66 TCGTTTCATGGGTTGACTTAGGCATACAGAGCTCATTTCCAATCTAAGACCAGA-CAAACCGAGG
*
16450881 GTT-TAGGTAGCAGGACCAGCAGCAAGATCAACAACATGC
130 GTTAT-GGCAGCAGGACCAGCAGCAAGATCAACAACATGC
* * *
16450920 AGGGGGAATTGGGCTAATCCCCGG-TTGGTGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCAC
1 AGGGGG-ATTGGGCTAATCCCCGGCTT-GTGCATTATACCTCTCCGACCGGCTCAGCGCCCGCAC
* * * * *
16450984 GCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA-TTCCACATCTCAGCCCCAG-CAGGACC
64 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGCTCATTTCCA-ATCTAAG-ACCAGACA-AACC
16451047 GAGGGTTATGGCAGCAGGACC
126 GAGGGTTATGGCAGCAGGACC
16451068 GACAGCGGGA
Statistics
Matches: 125, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
169 15 0.12
170 106 0.85
171 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (168 bp):
AGGGGGATTGGGCTAATCCCCGGCTTGTGCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACAGAGCTCATTTCCAATCTAAGACCAGACAAACCGAGGG
TTATGGCAGCAGGACCAGCAGCAAGATCAACAACATGC
Found at i:16451219 original size:26 final size:26
Alignment explanation
Indices: 16451190--16451242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16451180 GTTGACTTAG
16451190 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* * *
16451216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
16451242 G
1 G
16451243 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:16451543 original size:159 final size:158
Alignment explanation
Indices: 16451256--16451546 Score: 352
Period size: 159 Copynumber: 1.8 Consensus size: 158
16451246 GAACCGGACC
*
16451256 GAGGGTTGTGGCAGAAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCAGGCTTACGCATT
1 GAGGGTTGTGGCAGAAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCAGGCGTACGCATT
* * * * * *
16451321 CTGCCTCTCCGACCGACTGAGCGCCCGCTCGCCCATTTCGTGGGTTGGCTTAGCCATAGGGAGTT
66 ATGCCTCTCCGACCGACTCAGCGCCCGCTCGCCCATTTCATAGGTTGACTTAGCCATACGGAGTT
16451386 CATTCCATGTCTAAGCCCCAGTCGAACT
131 CATTCCATGTCTAAGCCCCAGTCGAACT
** * * ** * *
16451414 GAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCGTGCGCAT
1 GAGGGTTGTGGCAGAAGGATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCAGGCGTACGCAT
* * * * * *
16451479 TATGCCTCTTCGGCCGGCTCAGCGCTCG-TACGCTCGTTTCATAGGTTGACTTATG-CATACGGA
65 TATGCCTCTCCGACCGACTCAGCGCCCGCT-CGCCCATTTCATAGGTTGACTTA-GCCATACGGA
16451542 GTTCA
128 GTTCA
16451547 ATCCCAGTCG
Statistics
Matches: 109, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
158 29 0.27
159 79 0.72
160 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTGGCAGAAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCAGGCGTACGCATT
ATGCCTCTCCGACCGACTCAGCGCCCGCTCGCCCATTTCATAGGTTGACTTAGCCATACGGAGTT
CATTCCATGTCTAAGCCCCAGTCGAACT
Found at i:16451578 original size:159 final size:157
Alignment explanation
Indices: 16451215--16451717 Score: 368
Period size: 158 Copynumber: 3.2 Consensus size: 157
16451205 CCCCAGTCTA
* * *
16451215 AGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACCGAGGGTTGTGGCAGAAGGATCGA
1 AGCATACGGAGTTCAATCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAGAAGGATCGA
* * *
16451279 CAGCACGCAAGGGGGACCGGGCCGATCCCAGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCG
65 CAGCACGCAAGGGGGACCGGGCCGATCCCAGGCGTACGCATTATGCCTCTCCGACCGACTCAGCG
* * *
16451344 CCCGCTCGCCCATTTCGTGGGTTGGCTT
130 CCCGCTCGCCCATTTCATAGGTTGACTT
* * ** * * * **
16451372 AGCCATAGGGAGTTC-ATTCCATGTCTAAGCCCCAG-TCGAACTGAGGGTTGTGGCAGCGGGATC
1 AG-CATACGGAGTTCAATCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGAAGGATC
* * ** * * * * *
16451435 GGCAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCGTGCGCATTATGCCTCTTCGGCCGGCTCA
63 GACAGCACGCA-AGGGGGACCGGGCCGATCCCAGGCGTACGCATTATGCCTCTCCGACCGACTCA
* * *
16451500 GCGCTCG-TACGCTCGTTTCATAGGTTGACTT
127 GCGCCCGCT-CGCCCATTTCATAGGTTGACTT
* * * ** *
16451531 ATGCATACGGAGTTCAATCCCAGTCGAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGATCGA
1 A-GCATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGAAGGATCGA
* ** * * * ** * ** * * * *
16451596 TAGCACGCTGGGGGGATCGAGTCGATCCTTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCA
65 CAGCACGCAAGGGGGACCGGGCCGATCCCAGGCGTACGCATTATGCCTCTCCGACCGACTCAGCG
* * * * *
16451661 CCCGCACGCTCGTTTCATGGGTTGGCTT
130 CCCGCTCGCCCATTTCATAGGTTGACTT
* *
16451689 AGGCATACAGAGTTC-ATTCCACGTCTAAG
1 A-GCATACGGAGTTCAATCCCA-GTCTAAG
16451718 CATACGGAGT
Statistics
Matches: 266, Mismatches: 69, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 11 0.04
158 137 0.52
159 111 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
AGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGAAGGATCGAC
AGCACGCAAGGGGGACCGGGCCGATCCCAGGCGTACGCATTATGCCTCTCCGACCGACTCAGCGC
CCGCTCGCCCATTTCATAGGTTGACTT
Found at i:16451743 original size:26 final size:26
Alignment explanation
Indices: 16451691--16451743 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16451681 GTTGGCTTAG
*
16451691 GCATACAGAGTTCATTCCACGTCTAA
1 GCATACAGAGTTCATTCCACGTATAA
*
16451717 GCATACGGAGTTCATTCC-CAGTATAA
1 GCATACAGAGTTCATTCCAC-GTATAA
16451743 G
1 G
16451744 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTATAA
Found at i:16452442 original size:26 final size:26
Alignment explanation
Indices: 16452412--16452461 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16452402 GTTGACTTAG
16452412 GCATACAGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
** * *
16452438 GCATATGGAGTTCATTCCCAGTCT
1 GCATACAGAATTCATCCCCAGTCT
16452462 GAGATTGGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:16452886 original size:26 final size:26
Alignment explanation
Indices: 16452850--16452902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16452840 GTTGACTTAG
16452850 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16452876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16452902 G
1 G
16452903 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16453383 original size:26 final size:26
Alignment explanation
Indices: 16453347--16453399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16453337 GTTGGCTTAG
16453347 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16453373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16453399 G
1 G
16453400 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16454726 original size:26 final size:26
Alignment explanation
Indices: 16454696--16454746 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16454686 GTTGACTTAG
*
16454696 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16454722 GCATATGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
16454747 GGATCGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16456072 original size:196 final size:195
Alignment explanation
Indices: 16455732--16456182 Score: 528
Period size: 196 Copynumber: 2.3 Consensus size: 195
16455722 GCTAAGCATC
* * * *
16455732 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCACACGGAG
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGC-CCCGGAG
* *
16455796 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAACAGGACCAGCAACAGGATCGA
64 TTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTTGCGATAACAGGACCAGCAACAGGATCGA
** * * * *
16455861 CAGCTCGTAAGGGGGACC-AGCCTGATCCTCGGCTTACGTATTCTGCCTCTTCGATCGACTGAGC
129 CAGCAAGCAAGGGGGACCGAGCC-GATCCTCGGCTTACGCATTCTGCCTCTTCGACCGACTAAGC
*
16455925 GTT
193 GCT
*
16455928 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCTGGAGT
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC-GGAGT
* * * ** * * * * **
16455993 TCATTCCCAGTCTAACATCGGATCGGATCGAGGGTTGCGATAGTATGACTAGTAGCAGGATCGGT
65 TCATTCCCAGTCTAACATCAGATCAGACCGAGGGTTGCGATAACAGGACCAGCAACAGGATCGAC
* ** *
16456058 AGCAAGCAAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGGCCGACTAAGCGC
130 AGCAAGCAAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGACTAAGCGC
16456123 T
195 T
* ** ** * *
16456124 CGCATGCTTATTTCGTGGCCTGGCTTAGGCATACAGTGTTCATTCCATGTCTAGGCCCC
1 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
16456183 AGTTGGATCG
Statistics
Matches: 215, Mismatches: 37, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
195 5 0.02
196 207 0.96
197 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (195 bp):
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCGGAGTT
CATTCCCAGTCTAACATCAGATCAGACCGAGGGTTGCGATAACAGGACCAGCAACAGGATCGACA
GCAAGCAAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGACTAAGCGCT
Found at i:16457038 original size:158 final size:158
Alignment explanation
Indices: 16456362--16457046 Score: 505
Period size: 158 Copynumber: 4.3 Consensus size: 158
16456352 CCCAGTCTAA
* * * * * * * *
16456362 GCATACGTAGTTCATTCC-CAGTCTAAGATCGGATCGGATCGAGGGCTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * *
16456426 AGCATGCA-GGGGGATCGAGCCGATCCTCGGCTTGCGTATTCTACCTTTTCGACCCGTTGAACGC
66 AGCATGCAGGGGGGACCGAGCCGATCC-CGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
* *
16456490 CCGCACACCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
16456519 GCATAGGGGGTTCATTCCAT-GTGTAAGCCCCAG-CCGGACCGAGGGTTGTGGCA--ACGGGTCC
1 GCATACGGAGTTCATTCCATAGTCTAAG-ACCAGACCGGATCGAGGGTTGCGGCAGTA-GGAT-C
* * ** * * * *** *
16456580 GACAGCAAGCAGAGGGGGACCGGGCTAATCCCTGACTTGCGCATTATGCCTCTCCGGTTGGCTCA
63 GACAGCATGCAG-GGGGGACCGAGCCGATCCC-GGCTTGCGCATTCTACCTCTCCGACCGGCTGA
* * * * * *
16456645 GCACCTGAACGCTCGTTTCGTGGTTTGACTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*** * * * **
16456678 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGATCAGA-CTGAGGGTTACGATAGTAGGATCGA
1 GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGGATC-GAGGGTTGCGGCAGTAGGATCGA
* * * ** * * **
16456741 CAGCATGCAGGAGGGACTTG-GCCGGTCCCCGGCTTATGCATTCTGCCTCTTCGATGGGCTGAGC
65 CAGCATGCAGGGGGGAC-CGAGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGC
**
16456805 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
16456836 GCATATGGAGTTCATT-CGTAGTCTAAGATCGGATC-AAACTGAGGGTTGGGGCAGTAGGATCGA
1 GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGGATC-GAGGGTTGCGGCAGTAGGATCGA
* *
16456899 TAGCATGCAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCG
65 CAGCATGCAGGGGGGACCGAGCCGATCC-CGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
*
16456964 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
16456994 GCATACGAAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCA
1 GCATACGGAGTTCATTCCATAGTCTAAG-ACCAGACCGGATCGAGGGTTGCGGCA
16457047 ACAAGACCGA
Statistics
Matches: 402, Mismatches: 105, Indels: 41
0.73 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 52 0.13
158 228 0.57
159 114 0.28
160 3 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGGATCGAGGGTTGCGGCAGTAGGATCGAC
AGCATGCAGGGGGGACCGAGCCGATCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16457638 original size:26 final size:26
Alignment explanation
Indices: 16457602--16457680 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16457592 GTTGGCTTAG
16457602 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
16457628 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16457654 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16457680 G
1 G
16457681 AGTTTGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16458380 original size:26 final size:26
Alignment explanation
Indices: 16458351--16458403 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16458341 GTTGACTTAG
16458351 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16458377 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16458403 G
1 G
16458404 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16458759 original size:159 final size:158
Alignment explanation
Indices: 16458377--16458762 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 158
16458367 CCCAGTCTAA
* **
16458377 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGGT
1 GCATA-GAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGAC
* * * * *
16458441 AGCACACAAAGGGGATCGAGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCAGTTGAGCTC
65 AGCACACAAAGGGGATCGAGCCAATCCCCGGCTTGAGCATTATGCCTCTCCGGTCAGCTCAGCAC
** * * *
16458506 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCAAACCCATTTCGTAGGTTGACTTAG
* * * * * * * * *
16458535 GTATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CTGGATCGAGGGTTGTGGCAATGGGATTGA
1 GCATAGAGAGTTCATTCCCA-GTCTAAGA-TCAGACCGGATCGAGGGTTGCGACAGTAGGATCGA
* * ** * * *
16458598 CAGCACACAGAGGGGGATCGGGTTAATCCCTGGCTTGCGCATTATGCCTCTCCGG-CTGGCTCAG
64 CAGCACACA-AAGGGGATCGAGCCAATCCCCGGCTTGAGCATTATGCCTCTCCGGTC-AGCTCAG
*
16458662 CACCCGCAAACTCATTTCGTAGGTTGACTTAG
127 CACCCGCAAACCCATTTCGTAGGTTGACTTAG
* * *
16458694 GCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATAGAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACA
16458759 GCAC
66 GCAC
16458763 GTAGGGGGGA
Statistics
Matches: 179, Mismatches: 42, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 54 0.30
159 118 0.66
160 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATAGAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACA
GCACACAAAGGGGATCGAGCCAATCCCCGGCTTGAGCATTATGCCTCTCCGGTCAGCTCAGCACC
CGCAAACCCATTTCGTAGGTTGACTTAG
Found at i:16458851 original size:158 final size:156
Alignment explanation
Indices: 16458385--16458877 Score: 470
Period size: 158 Copynumber: 3.1 Consensus size: 156
16458375 AAGCATACGA
* **
16458385 AGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCACACA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACA
** * * * * * *
16458449 AAGGGGATCGAGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGTCAGTTGAGCTCCCGCACGC
65 GGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTAAGCACCCGCACGC
* * * *
16458514 CCGTTTCGTGGGTTGGCTTAGGTATAGGG
128 TCGTTTCGTGGGTTGACTTAGGCATATGG
* * * * * * *
16458543 AGTTCATTCCATGTCTAAGACCCAG-CTGGATCGAGGGTTGTGGCAATGGGATTGACAGCACACA
1 AGTTCATTCCATGTCTAAGA-TCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACA
*** * * * **
16458607 GAGGGGGATCGGGTTAATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCACCCGCAAA
65 G-GGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGTC-GGCTAAGCACCCGCACG
* * *
16458672 CTCATTTCGTAGGTTGACTTAGGCATATAG
127 CTCGTTTCGTGGGTTGACTTAGGCATATGG
* * **
16458702 AGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACA
* * * * * *
16458766 GGGGGGACCGGGCCGGTCTTCAGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCCCGC
65 GGGGGGATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTAAGCACCCGCACGC
* *
16458831 TTGTTTCGTGGGTTGCCTTAGGCATATGG
128 TCGTTTCGTGGGTTGACTTAGGCATATGG
16458860 AGTTCATTCCATGTCTAA
1 AGTTCATTCCATGTCTAA
16458878 CCATACGGAG
Statistics
Matches: 263, Mismatches: 62, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 138 0.52
159 116 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACAG
GGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTAAGCACCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATATGG
Found at i:16458889 original size:26 final size:26
Alignment explanation
Indices: 16458853--16458903 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16458843 TTGCCTTAGG
*
16458853 CATATGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCAT-TCTAAC
*
16458879 CATACGGAGTTCTTTCCCATTCTAA
1 CATACGGAGTTCATTCCCATTCTAA
16458904 GATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCATTCTAAC
Found at i:16459135 original size:200 final size:196
Alignment explanation
Indices: 16458746--16459169 Score: 481
Period size: 200 Copynumber: 2.1 Consensus size: 196
16458736 GGGTTGCGAT
* * * *
16458746 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGGTCTTCAGCTTGCGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGA
* * * * *
16458811 TCGGCTAAGCGCCCGCCCGCTTGTTTCGTGGGTTGCCTTAGGCATATGGAGTTCATTCCATGTCT
66 CCGGCTAAGCGCCCCCCCGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * *
16458876 AACCATACGGAGTTCTTTCCCATTCTAAGATCAGACCGGACCGAGGCTTGCGATAGCAGGACCAG
131 AACCATACAGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGCTTACGATAGCAGGACCAG
16458941 C
196 C
** * * * *
16458942 AGCAGGATCGGTAGCATGTAGGGGGGACCAGGTCGATCCTCGGCTTGCACATTCTGCCTCTTCGA
1 AGCAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGA
* * * *
16459007 CCGGTTGAGTGCCCCCACATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCGGCTAAGCGCCCCC-C---CGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCAT
* * *** * *
16459072 GTCTAAGCATACAGAGTTCATTCCCAGTCCACGATC-GAACCAGATTTAGGGTTACGGTAGCAGG
127 GTCTAACCATACAGAGTTCATTCCCAGTCCAAGATCAG-ACCAGACCGAGGCTTACGATAGCAGG
16459136 ACCAGC
191 ACCAGC
* * *
16459142 AGCAGGATGGACAGCCCGCAGGGGGGAC
1 AGCAGGATCGACAGCACGTAGGGGGGAC
16459170 TGGGTCGACC
Statistics
Matches: 185, Mismatches: 38, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
196 66 0.36
197 1 0.01
199 1 0.01
200 117 0.63
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGA
CCGGCTAAGCGCCCCCCCGCTCGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCT
AACCATACAGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGCTTACGATAGCAGGACCAG
C
Found at i:16459447 original size:26 final size:26
Alignment explanation
Indices: 16459418--16459470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16459408 GTTGACTTAG
16459418 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
**
16459444 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
16459470 G
1 G
16459471 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:16459746 original size:159 final size:160
Alignment explanation
Indices: 16459583--16459949 Score: 409
Period size: 159 Copynumber: 2.3 Consensus size: 160
16459573 CCTGGACGCC
* * * *
16459583 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACTGAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGAAG
* * * *
16459647 GTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATG
66 GTTATGGCAGCAGGACCGATAGCACGCAG-CGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
* * * * **
16459712 CCTCTTCGGCCGGCTCAGTG-CCCGCATGCT
130 CCTCTCCAGCCGACTCAGCGCCCCGCACACT
* * * * * *
16459742 CATTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGGCAGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACAGAA
* * * * * *
16459805 GGTTGTGGCAGCAGGATCGATAGCACGTAGCGGGGATCGGGCCGATCCCTGACTTGCGCATTCTG
65 GGTTATGGCAGCAGGACCGATAGCACGCAGCGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
* * *
16459870 TCTCTCCAGTCGACTGAGCGCCCCGCACACT
130 CCTCTCCAGCCGACTCAGCGCCCCGCACACT
**
16459901 TGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16459950 TACGGATTAC
Statistics
Matches: 170, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
158 49 0.29
159 117 0.69
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (160 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGAAG
GTTATGGCAGCAGGACCGATAGCACGCAGCGGGGACCGGGCCGATCCCCGACTTGCGCATTATGC
CTCTCCAGCCGACTCAGCGCCCCGCACACT
Found at i:16460662 original size:26 final size:26
Alignment explanation
Indices: 16460632--16460684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16460622 GTTGACTTAG
16460632 GCATACGA-AGTTCATCCCCAGTCTAA
1 GCATA-GAGAGTTCATCCCCAGTCTAA
* *
16460658 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATCCCCAGTCTAA
16460684 G
1 G
16460685 ATCAGAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATCCCCAGTCTAA
Found at i:16461159 original size:26 final size:26
Alignment explanation
Indices: 16461129--16461181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16461119 GTTGGCTTAG
16461129 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16461155 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16461181 G
1 G
16461182 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16461507 original size:167 final size:167
Alignment explanation
Indices: 16461301--16461614 Score: 459
Period size: 167 Copynumber: 1.9 Consensus size: 167
16461291 GCGCCCTTAC
* *
16461301 GCTCATTTCGTGGGTTGGCTTAGGCATACAGATTTCATTCCATGTCTAACCCCCAGCCAGACCGA
1 GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCCCCAACCAGACCGA
* * * *
16461366 GGGTTGTGGCAGCAGGACCGGCAATAAGATC-GACAGCATGCAGAGAGGGACCGGGCTGATCCTT
66 GGGTTATGGCAGCAGGACCGACAATAAGATCAG-CAGCACGCAGAGAGGGACCGGGCTAATCCTT
* *
16461430 AGCTTGCGTATTATGCCTGGTCGGCTGAGCACCCGCAT
130 AGCTTACGCATTATGCCTGGTCGGCTGAGCACCCGCAT
* * *
16461468 GCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGA
1 GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCCCCAACCAGACCGA
* * * * * *
16461533 GGGTTATGGTAGCAGGACCGACAGTGAGATCAGCAGCACGTAGAGGGGGACCGGGCTAATCCTTG
66 GGGTTATGGCAGCAGGACCGACAATAAGATCAGCAGCACGCAGAGAGGGACCGGGCTAATCCTTA
16461598 GCTTACGCATTATGCCT
131 GCTTACGCATTATGCCT
16461615 TTCCGATCTG
Statistics
Matches: 129, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
167 128 0.99
168 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (167 bp):
GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCCCCAACCAGACCGA
GGGTTATGGCAGCAGGACCGACAATAAGATCAGCAGCACGCAGAGAGGGACCGGGCTAATCCTTA
GCTTACGCATTATGCCTGGTCGGCTGAGCACCCGCAT
Found at i:16461704 original size:26 final size:26
Alignment explanation
Indices: 16461675--16461725 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16461665 GTTGACTTAG
16461675 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
16461701 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCTAGTCTA
16461726 GGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16462213 original size:26 final size:26
Alignment explanation
Indices: 16462176--16462228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16462166 GTTGGCTTAG
*
16462176 GTATACGGAGTTCATT-CCATGTCTAA
1 GTATACGAAGTTCATTCCCA-GTCTAA
16462202 GTATACGAAGTTCATTCCCAGTCTAA
1 GTATACGAAGTTCATTCCCAGTCTAA
16462228 G
1 G
16462229 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GTATACGAAGTTCATTCCCAGTCTAA
Found at i:16463402 original size:158 final size:157
Alignment explanation
Indices: 16462828--16463402 Score: 475
Period size: 158 Copynumber: 3.6 Consensus size: 157
16462818 ACCATCTGTT
* * * * * *
16462828 CGATCCTTGACTTGCGC-ATCCTGCCTCTCTAGTCGGTTGAGCGTCCGCACGCTTGTTTCATGGG
1 CGATCCCTGACTTGCGCAAT-CTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCGTTTCATGGG
** *
16462892 TTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCAGATC-GAGGGTTGCGGCAGT
65 TTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGCAGT
**
16462956 AGGATCGATAGCATGTAGGA-GGGATCGGGC
128 AGGATCGATAGCATACAGGAGGGGAT-GGGC
* * * ** * * * * *
16462986 CGATCCCCGACTTGCGCAATCTACCTCTTCAACCGACTGAGTGCCCACATGCCCG-TTCTGTGGG
1 CGATCCCTGACTTGCGCAATCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCGTTTC-ATGGG
* * ** * * *
16463050 TT-AGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGGCCCAG-CCGGA-TCAAGGGTTGTGGCA
65 TTGA-CTTAGGCATACGGAGTTCATTCCA-GTCTAA-GATCAGACCGAACT-GAGGGTTGCGGCA
** *
16463112 GCGGGATCGATAGCACACA-GAGGGGGATTGGGC
126 GTAGGATCGATAGCATACAGGA-GGGGA-TGGGC
* * * * * ** *
16463145 CGATCCCTGGCTTGCGTAATATGCCTCTCCGGTCGGCTCAGCGCCTGCATGCTCGTTTCATGGGT
1 CGATCCCTGACTTGCGCAATCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
* * * *
16463210 TGACTTAGGCGTACGGAGTTTATTCCCAGCCTAAGATCAGACCGAACTGAGGGTTGCGGTAGTAG
66 TGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGTAG
* * *
16463275 GATTGACAGCATACAGGAGGGGACTGGGT
130 GATCGATAGCATACAGGAGGGGA-TGGGC
** * * * *
16463304 CGAT-CCTGACTTATGCATTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCGTTTCGTGGAT
1 CGATCCCTGACTTGCGCAATCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
* *
16463368 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
66 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
16463403 CATACGAAGT
Statistics
Matches: 316, Mismatches: 84, Indels: 34
0.73 0.19 0.08
Matches are distributed among these distances:
157 14 0.04
158 170 0.54
159 122 0.39
160 10 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CGATCCCTGACTTGCGCAATCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGTAGG
ATCGATAGCATACAGGAGGGGATGGGC
Found at i:16463767 original size:26 final size:26
Alignment explanation
Indices: 16463731--16463781 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463721 GTTGACTTAG
16463731 GCATACAGAGTTCATCCCCAATCTAC
1 GCATACAGAGTTCATCCCCAATCTAC
* *
16463757 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
16463782 AGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAC
Found at i:16464262 original size:17 final size:17
Alignment explanation
Indices: 16464240--16464275 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
16464230 AGGCATACGG
16464240 AGTTCATT-CCATGTCTA
1 AGTTCATTCCCA-GTCTA
16464257 AGTTCATTCCCAGTCTA
1 AGTTCATTCCCAGTCTA
16464274 AG
1 AG
16464276 ATCAGACCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (17 bp):
AGTTCATTCCCAGTCTA
Found at i:16464447 original size:26 final size:26
Alignment explanation
Indices: 16464418--16464470 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16464408 ATTAACTTAG
*
16464418 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
16464444 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16464470 G
1 G
16464471 ATCAAACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16465509 original size:26 final size:26
Alignment explanation
Indices: 16465472--16465524 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16465462 GTTGACTTAG
16465472 GCATACGAAGTTCA-TCTCTAGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
*
16465498 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16465524 G
1 G
16465525 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16466352 original size:26 final size:26
Alignment explanation
Indices: 16466316--16466365 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16466306 GTTGACTTAG
16466316 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTCATCCCCAGTCTGA
* *
16466342 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16466366 AAGATTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTGA
Found at i:16466847 original size:26 final size:26
Alignment explanation
Indices: 16466810--16466862 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16466800 GTTGGCTTAG
*
16466810 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16466836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16466862 G
1 G
16466863 ATCGGTCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16467045 original size:26 final size:26
Alignment explanation
Indices: 16467015--16467076 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
16467005 GTTGACTTAG
16467015 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16467041 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16467067 GCATACGGAG
1 GCATACGGAG
16467077 ATTGAACCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16468355 original size:158 final size:158
Alignment explanation
Indices: 16468121--16468862 Score: 565
Period size: 158 Copynumber: 4.7 Consensus size: 158
16468111 GCACACAGGA
* * * * * *
16468121 GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCTGCACGCCCG
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCA
* * * *
16468186 TTTTGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGTCGAGGGTT
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGTCGAGGGTT
** *
16468250 GTGACAGTGGGACTAGCAGCACGAAAAGG
131 GTGACAGCAGGACTGGCAGCACG-AAAGG
* * * * *
16468279 GGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCC-GACTCAGCACCCGAACGCTC
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAG-CTGAGCGCCCGCACGCTC
* * * * *
16468343 ATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACTC-GACTGAG
65 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC-CAGTC-GAG
* * * * * *
16468405 GGTTGCGATAGAAGG-TTCGGTAGCACGCAAGG
127 GGTTGTGACAGCAGGACT-GGCAGCACGAAAGG
* * * * * * * * *
16468437 GGGATCGGGTCGATCCCCGGTTTGTGTATTCTACCTCTCCCG-CCAGCTGACCGCCCGCACGCCC
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-TCGACCAGCTGAGCGCCCGCACGCTC
* * * * * * * **
16468501 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGCCCCAGTCGAACCGAGGGT
65 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGTCGAGGGT
* * * * *
16468566 TGTGGCAGCGGGACCGGCAGCACGCAGATG
130 TGTGACAGCAGGACTGGCAGCACG-AAAGG
* ** * * * * **
16468596 GGGACCAAGCCGATCCTCAGCTTGCGCATTATGCCTC-TCGACCAGCTCAACGCCCAAACGCTCA
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCA
* * * * * * *
16468660 TTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCA-GTCTACG-ATCA-ACCGGATTGAGGG
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAG-TCGAGGG
* ** *
16468722 TTGTGGCAGCAGGA-TCGATAGCACG-CAGG
129 TTGTGACAGCAGGACT-GGCAGCACGAAAGG
* * * * * * * *
16468751 GGGATCGGGTCGGTCCCCGACTTACGCATTTTGCCTCTTCGACCGGCTGAGTGCCCGCACACTCA
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCA
*
16468816 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16468863 TACAGAGTTC
Statistics
Matches: 445, Mismatches: 119, Indels: 41
0.74 0.20 0.07
Matches are distributed among these distances:
155 32 0.07
156 57 0.13
157 35 0.08
158 259 0.58
159 62 0.14
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCAGCTGAGCGCCCGCACGCTCA
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGTCGAGGGTT
GTGACAGCAGGACTGGCAGCACGAAAGG
Done.