Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 110 of 138
Found at i:16468681 original size:316 final size:315
Alignment explanation
Indices: 16468042--16468861 Score: 934
Period size: 316 Copynumber: 2.6 Consensus size: 315
16468032 CCTAGTCTAA
*
16468042 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAATCAGATCGAGGGTTACGGCAGAAGGT
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTCG-A-C---T-GAGGGTTGCGGCAGAAGGT
* * * *
16468106 T-TGTAGCACACAGGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTG
60 TCGGTAGCACGCAGG-GGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTG
* * * *
16468170 AGCGCCTGCACGCCCGTTTTGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
124 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
** * * * ** *
16468235 AGCCAGTCGAGGGTTGTGACAGTGGGACTAGCAGCACGAAAAGGGGGATCGGGCCGATCCCCGGC
189 AGCCAACCGAGGGTTGTGACAGCGGGACCAGCAGCACGAAAAGGGGGACCAAGCCGATCCCCAGC
* * * * *
16468300 TTGTGCATTATGCCTCTTCGGCCGACTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAG
254 TTGCGCATTATGCCTCTTCGACCGACTCAACACCCAAACGCTCATTTCATGGGTTGACTTAG
* **
16468362 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTCGACTGAGGGTTGCGATAGAAGGTTCGGTA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTCGACTGAGGGTTGCGGCAGAAGGTTCGGTA
* * * * *
16468427 GCACGCAAGGGGGATCGGGTCGATCCCCGGTTTGTGTATTCTACCTCTCCCG-CCAGCTGACCGC
66 GCACGC-AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-CCGACCAGCTGAGCGC
* * * *
16468491 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGCCCCAGTCG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CC
* * * * * *
16468556 AACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGATGGGGACCAAGCCGATCCTCAGCTTGC
193 AACCGAGGGTTGTGACAGCGGGACCAGCAGCACGAAAAGGGGGACCAAGCCGATCCCCAGCTTGC
*
16468621 GCATTATGCCTC-TCGACC-AGCTCAACGCCCAAACGCTCATTTCATGGGTTGACTTAG
258 GCATTATGCCTCTTCGACCGA-CTCAACACCCAAACGCTCATTTCATGGGTTGACTTAG
* * * * * * * * *
16468678 GCATACGGAGCTCATTCCCAGTCTACGATC-AAC-CGGATTGAGGGTTGTGGCAGCAGGATCGAT
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTC-GACTGAGGGTTGCGGCAGAAGGTTCGGT
* * * * * * *
16468741 AGCACGCAGGGGGATCGGGTCGGTCCCCGACTTACGCATTTTGCCTCTTCGACCGGCTGAGTGCC
65 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
* * * *
16468806 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16468862 ATACAGAGTT
Statistics
Matches: 422, Mismatches: 70, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
313 2 0.00
314 93 0.22
315 48 0.11
316 173 0.41
317 69 0.16
319 1 0.00
320 33 0.08
321 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACTCGACTGAGGGTTGCGGCAGAAGGTTCGGTA
GCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAC
CGAGGGTTGTGACAGCGGGACCAGCAGCACGAAAAGGGGGACCAAGCCGATCCCCAGCTTGCGCA
TTATGCCTCTTCGACCGACTCAACACCCAAACGCTCATTTCATGGGTTGACTTAG
Found at i:16468870 original size:26 final size:26
Alignment explanation
Indices: 16468834--16468886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16468824 GTTGGCTTAG
16468834 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16468860 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16468886 G
1 G
16468887 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16471100 original size:26 final size:26
Alignment explanation
Indices: 16471071--16471123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471061 GTTGGCTTAG
*
16471071 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16471097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16471123 G
1 G
16471124 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16471474 original size:26 final size:26
Alignment explanation
Indices: 16471440--16471492 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471430 GTTGACTTAG
16471440 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
16471466 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16471492 G
1 G
16471493 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16471733 original size:357 final size:362
Alignment explanation
Indices: 16471031--16471737 Score: 836
Period size: 357 Copynumber: 2.0 Consensus size: 362
16471021 CCTTTTCGAC
* * *
16471031 CGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATCCCCAGTCTA
1 CGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
16471096 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGCAGCAGGACTAGCA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTT----AGCA-GACTAGCA
* * * * * * * **
16471161 GTAGGATTGGTAGCATATAGAGGGGGATCGGGCCTATCCCCGACTTGCGCATTCTGGCTCTCCGG
126 -TAGGATCGGCAGCACACAGAGAGGGATCGGGCCGATCCCAGACTTGCGCATTCTACCTCTCCGG
* * * *
16471226 TCGGCTGAGCACCTGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
190 CCGACTGAGCACCTGCACACCCATTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * *** * *
16471291 AAGCCCCAGTCGGACTGAGGGTTGTGACAGTAGGATCGGTAACACGCAGAGAAAGATCGGGCTGA
255 AAGCCCCAGCCGGACCGAGGGTTGTGACAGCAGGACCAACAACACGCAGAGAAAGATCAGGCCGA
* *
16471356 TCCTTGGCTTGCATATTATGCCTCTTCGGTCGGCCTCTTTGGT
320 TCCCTGGCTTGCACATTATGCCTCTTCGGTCGGCCTCTTTGGT
* * *
16471399 CGACTGAATGCCCGCACGCATGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCT
1 CGACTGAACGCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
*
16471464 AAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTT-GC-GAC-AGC-T-GG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTAGCAGACTAGCATAGG
* * * *
16471524 ATCGGCAGCACGCA-AGAGGGATCGGGCCGATCCCTAG-CTTGTGCATTCTACCTTTCTGGCCGA
130 ATCGGCAGCACACAGAGAGGGATCGGGCCGATCCC-AGACTTGCGCATTCTACCTCTCCGGCCGA
** * * *
16471587 CTGAGTGCCTGCACGCCCATTTCATGGGTCGGCTTAGGCATAGGGAG-TCAATTCCTTGTCTAAG
194 CTGAGCACCTGCACACCCATTTCATGGGTCGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAG
* * * * ***
16471651 CCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCATGCAGAGGGGGATCAGGCCGATCC
258 CCCCAGCCGGACCGAGGGTTGTGACAGCAGGACCAACAACACGCAGAGAAAGATCAGGCCGATCC
**
16471716 CTGGCTTGTGCATTATGCCTCT
323 CTGGCTTGCACATTATGCCTCT
16471738 CCGACCGGTT
Statistics
Matches: 287, Mismatches: 49, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
356 2 0.01
357 158 0.55
358 12 0.04
359 1 0.00
361 3 0.01
362 3 0.01
364 2 0.01
368 18 0.06
369 88 0.31
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (362 bp):
CGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTAGCAGACTAGCATAGGA
TCGGCAGCACACAGAGAGGGATCGGGCCGATCCCAGACTTGCGCATTCTACCTCTCCGGCCGACT
GAGCACCTGCACACCCATTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
CAGCCGGACCGAGGGTTGTGACAGCAGGACCAACAACACGCAGAGAAAGATCAGGCCGATCCCTG
GCTTGCACATTATGCCTCTTCGGTCGGCCTCTTTGGT
Found at i:16471837 original size:157 final size:158
Alignment explanation
Indices: 16471474--16471906 Score: 462
Period size: 157 Copynumber: 2.8 Consensus size: 158
16471464 AAGCATGCGG
* * *
16471474 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCTGGATCGGCAGCACGCA-
1 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * * * *
16471538 AGAGGGATCGGGCCGATCCCTAGCTTGTGCATTCTACCTTTCTGGCCGACTGAGTGCCTGCACGC
66 AGAGGGATCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGATTGAGTGCCCGCACGC
* *
16471603 CCATTTCATGGGTCGGCTTAGGCATAGGG
131 CCATTTCA-GGGTCGACTTAGGCATAGGA
** * ** * * * * * *
16471632 AG-TCAATTCCTTGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCATGC
1 AGTTC-ATTCCCAGTCTAAGATCGGA-TCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
16471695 AGAGGGGGATCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGACCGGTTGAGTGCCCGCAC
64 AGAGAGGGATCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGATTGAGTGCCCGCAC
* * * *
16471760 GCTCGTTTC-GGGTTGACTTAGGCATATGA
129 GCCCATTTCAGGGTCGACTTAGGCATAGGA
* *
16471789 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * ** *
16471854 -GAGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAACCGATTGAG
66 AGAGGGATCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGATTGAG
16471907 CACCTGCACA
Statistics
Matches: 217, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
156 44 0.20
157 66 0.30
158 48 0.22
159 59 0.27
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGAGGGATCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGATTGAGTGCCCGCACGC
CCATTTCAGGGTCGACTTAGGCATAGGA
Found at i:16472854 original size:26 final size:26
Alignment explanation
Indices: 16472818--16472870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16472808 GTTGGCTTAG
*
16472818 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
16472844 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
16472870 G
1 G
16472871 ATCGGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16472891 original size:879 final size:863
Alignment explanation
Indices: 16471057--16473027 Score: 2139
Period size: 879 Copynumber: 2.3 Consensus size: 863
16471047 CGCTCGTTTC
* * *
16471057 GTGGGTTGGCTTAGGCATACGGAGTTTATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCT
1 GTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * * * * * * **
16471121 AAGATCGGATCGAACCGAGGGTTACGCAGCAGGACTAGCAGTAGGATTGGTAGCATATAGAGGGG
65 AAGATCGGACCGGACTGAGGGTTGCGCAGCAGGACTAGTAGTAGGATCGATA--ACGTAGA-GGG
* * * * * * * *
16471186 GATCGGGCCTATCCCCGACTTGCGCATTCTGGCTCTCCGGTCGGCTGAGCACCTGCACACTCA-T
127 GA-CCGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGACTGAGCACCCGCACGCTCATT
* *
16471250 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTG
191 TTC-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGTCGGACCGAGGGTTG
* * * * * ** *
16471315 TGACAGTAGGATCGGTAACACGCAGAGAAAGATCGGGCTGATCCTTGGCTTGCATATTATGCCTC
255 TGACAGGAGCAGCGGTAACACGCAGAGAAAGATCGAGCTAATCCCCGGCTTGCACATTATGCCTC
* * * ** * * *
16471380 TTCGGTCGGCCTCTTTGGTCGACTGAATGCCCGCACGCATGGTTTCATGGGTTGACTTAGGCATA
320 TCCAGCCGGCCTCTCCGGTCGACTGAATGCCCACACGCATGATTCCATGGGTTGACTTAGGCATA
** * * * * *
16471445 CGGAGTTCATCTCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGG
385 CACAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGG
* * * * * *
16471510 GTTGCGACAGCTGGATCGGCAGCACGCAAGAGGGATCGGGCCGATCCCTAGCTTGTGCATTCTAC
450 GTTACGACAGCAGGATCAGCAGCACGCAAGAGGGATCGGGCCAATACCTAGCTTGCGCATTCTAC
* * * *
16471575 CTTTCTGGCCGACTGAGTGCCTGCACGCCCATTTCATGGGTCGGCTTAGGCATAGGGAGTCAATT
515 CTCTCCGGCCGACTGAGTGCATGCACGCCCACTTCATGGGTCGGCTTAGGCATAGGGAGTCAATT
* * * * * *
16471640 CCTTGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCATGCAGAGGGGGAT
580 CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCAACAGCAT-CAGAAGAGGAT
* * * * * * * *
16471705 CAGGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCGTTTCG
644 CAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCGTTTCG
* * * *
16471770 GGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAG
709 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGGCAA
** *
16471835 CAGGATCGACAGCACGTAGGAGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAACC
774 CAGGATCGACAGCACACAGGAGGGACCAGGCCGATCCCCGGCTTACACATTCTACCTCTCCAACC
*
16471900 GATTGAGCACCTGCACATTCATTTT
839 GATTGAGCACCTGCACACTCATTTT
* * ** * * *
16471925 GTCGATTGGCTGCGGCATACGGAGTTCATTCCATGTCTAAGCATGCAGAATTCATTCCCAGTCTC
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * * *
16471990 AGATCAGACCGGATTGAGGGTTGCGGCAACAGGACCAGTAGTAGGATCGATAACGTAGGAGGGGA
66 AGATCGGACCGGACTGAGGGTTGC-GCAGCAGGACTAGTAGTAGGATCGATAACGTA-GAGGGGA
* * *
16472055 CCAGGCCGATCCCCGGCTTACGCATTTTGCCTCTTCGATCGACTGAGCACCCGCACGCTCATTTT
129 CC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGACTGAGCACCCGCACGCTCATTTT
*
16472120 CTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAAGCCCCAGTCGGACCGAGGGTTGTGG
193 CTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGTCGGACCGAGGGTTGT-G
*** **
16472185 TAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGTTGGATCGAGCTAATCCCCGGCTTGTGCA
257 -A-CAGGA--G-CAGC-GG-T--A-A-CACGCAGAGAAAGATCGAGCTAATCCCCGGCTTGCACA
* * *
16472250 TTATGCCTCTCCAGCCGGCCTCTCCGGTTGACTGAGTGCCCACATGC-TGATTCCATGGGTTGAC
311 TTATGCCTCTCCAGCCGGCCTCTCCGGTCGACTGAATGCCCACACGCATGATTCCATGGGTTGAC
* * *
16472314 TTAGGCATATACAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTTCTAGTCTAAGATCAGACC
376 TTAGGCATACACAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
** * * * *
16472379 -AGACCGAGGGTTACGGTAGCAGGATCAGCAGCATG-AAGGGGGATCGGGTCAATACCTGGCTTG
441 GA-ACCGAGGGTTACGACAGCAGGATCAGCAGCACGCAAGAGGGATCGGGCCAATACCTAGCTTG
* * *
16472442 CGCATTCTACCTCTCCGGCCGACTGAGTGCATGCACGCCCGCTTCGTGGGTTGGCTTAGGCATAG
505 CGCATTCTACCTCTCCGGCCGACTGAGTGCATGCACGCCCACTTCATGGGTCGGCTTAGGCATAG
** * ** *
16472507 GGAGTTTATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAATGGGATCAACAGC-TCA
570 GGAGTCAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCAACAGCATC-
** * * *
16472571 TAGAAGAGGATTGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGAA
634 -AGAAGAGGATCAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAA
* * * **
16472636 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGAT-GGATT
698 CGCTCGTTTC--GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATCGGATCGAACC
* * * * * **
16472699 GAGGGTTACGGCAACAGGATCGATAGCACACAGGAGGGGATCGGGTCGGTCCCCGGCTTGTACAT
760 GAGGGTTACGGCAACAGGATCGACAGCACACAGGA-GGGACCAGGCCGATCCCCGGCTTACACAT
* * * * *
16472764 TCTGCCTCTCCGATCGGTTGAGCACCCT-CACACTCCTTTT
824 TCTACCTCTCCAACCGATTGAGCA-CCTGCACACTCATTTT
** *
16472804 GTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCTGTCTA
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * * * *
16472869 AGATCGGGCCGGACTAAGGGTTGCAGCAGCAGGACTAGTAGCAGGATCAACAGCACGTAGAGGGG
66 AGATCGGACCGGACTGAGGGTTGC-GCAGCAGGACTAGTAGTAGGATCGATA--ACGTAGAGGGG
* * * * *
16472934 ACCGAGCTGATCCCCGACTTGTGCATTCTGCCTC-TCTGA-CCAGTTGAGCACCCGCACGTTCAT
128 ACCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTTC-GATCGA-CTGAGCACCCGCACGCTCAT
* *
16472997 TTT-GGGGTTGACTTAGGCATACGGAGTTCAT
190 TTTCTGGGTTGGCTTAGGCATACGGAGTTCAT
16473028 CCCCAGTCTA
Statistics
Matches: 902, Mismatches: 171, Indels: 49
0.80 0.15 0.04
Matches are distributed among these distances:
866 1 0.00
867 118 0.13
868 76 0.08
869 23 0.03
870 4 0.00
872 1 0.00
873 2 0.00
874 2 0.00
875 2 0.00
876 1 0.00
877 191 0.21
878 129 0.14
879 286 0.32
880 61 0.07
881 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (863 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTA
AGATCGGACCGGACTGAGGGTTGCGCAGCAGGACTAGTAGTAGGATCGATAACGTAGAGGGGACC
GGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGACTGAGCACCCGCACGCTCATTTTCTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGTCGGACCGAGGGTTGTGACAG
GAGCAGCGGTAACACGCAGAGAAAGATCGAGCTAATCCCCGGCTTGCACATTATGCCTCTCCAGC
CGGCCTCTCCGGTCGACTGAATGCCCACACGCATGATTCCATGGGTTGACTTAGGCATACACAGT
TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACG
ACAGCAGGATCAGCAGCACGCAAGAGGGATCGGGCCAATACCTAGCTTGCGCATTCTACCTCTCC
GGCCGACTGAGTGCATGCACGCCCACTTCATGGGTCGGCTTAGGCATAGGGAGTCAATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAGGACCAACAGCATCAGAAGAGGATCAGGCCA
ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCGTTTCGGGTTGAC
TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGGCAACAGGATC
GACAGCACACAGGAGGGACCAGGCCGATCCCCGGCTTACACATTCTACCTCTCCAACCGATTGAG
CACCTGCACACTCATTTT
Found at i:16473049 original size:26 final size:26
Alignment explanation
Indices: 16473013--16473065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473003 GTTGACTTAG
16473013 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16473039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16473065 G
1 G
16473066 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16473356 original size:118 final size:119
Alignment explanation
Indices: 16473126--16473360 Score: 409
Period size: 118 Copynumber: 2.0 Consensus size: 119
16473116 GACCAGGCTG
* *
16473126 ATCCCCGGCTTAGCCATTTTTCCTTTTCAGTCGGCTGAGCACCCGTACACCCGTTTCATGGGTTG
1 ATCCCCGACTTACCCATTTTTCCTTTTCAGTCGGCTGAGCACCCGTACACCCGTTTCATGGGTTG
*
16473191 GCTTAGGCATAGGGAATTCATTAAATGTCTAAGCCCCAGCCGGACTGAGGGTCC
66 GCTTAGGCATAAGGAATTCATTAAATGTCTAAGCCCCAGCCGGACTGAGGGTCC
* * *
16473245 ATCCCCGACTTACCCA-TTTTGCTTTTCAGTCGGCTGAGCGCCCGTACACCCGTTTCGTGGGTTG
1 ATCCCCGACTTACCCATTTTTCCTTTTCAGTCGGCTGAGCACCCGTACACCCGTTTCATGGGTTG
16473309 GCTTAGGCATAAGGAATTCATTAAATGTCTAAGCCCCAGCCGGACTGAGGGT
66 GCTTAGGCATAAGGAATTCATTAAATGTCTAAGCCCCAGCCGGACTGAGGGT
16473361 TGTGGCAGTG
Statistics
Matches: 110, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
118 96 0.87
119 14 0.13
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.28
Consensus pattern (119 bp):
ATCCCCGACTTACCCATTTTTCCTTTTCAGTCGGCTGAGCACCCGTACACCCGTTTCATGGGTTG
GCTTAGGCATAAGGAATTCATTAAATGTCTAAGCCCCAGCCGGACTGAGGGTCC
Found at i:16473938 original size:159 final size:158
Alignment explanation
Indices: 16473486--16474010 Score: 515
Period size: 159 Copynumber: 3.3 Consensus size: 158
16473476 GAGCTGAACA
* *
16473486 CTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAG
1 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * * *
16473551 GGTTGTGGCAGCAGGATCGACAGCACGCA-GGGGGGATCGTGTCGGTCCCCAGCTTGAGCATTTT
66 GGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGAT-CCCAGCTTGCGCATTAT
* * * * **
16473615 GCCT-GTCCGACTGGTTGAGCAACCGCATG
130 GCCTCTTCGGTC-GGCTGAGCGCCCGCATG
* * **
16473644 CCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTCAGCCCCAG-CCGGATCG
1 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCG
* * * * * * * * *
16473707 AGGGTTGTGGCAACGGGATGGATAGCACACAGAGGGGGATCGGGTCAATCCCCGGCTTACGCATT
64 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGAT-CCCAGCTTGCGCATT
* * *
16473772 ATGCCTCTTCGGTCGGCTCAGTGCCCGCACG
128 ATGCCTCTTCGGTCGGCTGAGCGCCCGCATG
* * * * ** *
16473803 CTCATTTCGTGGGTTGACTTATGCAAACAGAGTTCATTCCCAGTCTAAGATTGGACCGGAGCGAG
1 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
** * * *
16473868 GGTTACGACAGCAAGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCAGACTTGCGCATTCT
66 GGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCAG-CTTGCGCATTAT
* * * *
16473933 ACCTCTCCGATCGGCTGAGCGCCTGCATG
130 GCCTCTTCGGTCGGCTGAGCGCCCGCATG
*
16473962 CTCGTTTCATGGGTT-AGCTTAGGCATACTA-AGTTTATT-CCATGTCTAAG
1 CTCGTTTCATGGGTTGA-CTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAG
16474011 CATACAGAGT
Statistics
Matches: 292, Mismatches: 65, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 85 0.29
159 197 0.67
160 8 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
GGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCAGCTTGCGCATTATG
CCTCTTCGGTCGGCTGAGCGCCCGCATG
Found at i:16474292 original size:26 final size:26
Alignment explanation
Indices: 16474240--16474292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16474230 GTTGGCGTAG
* * *
16474240 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
16474266 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16474292 G
1 G
16474293 GTCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16474632 original size:26 final size:26
Alignment explanation
Indices: 16474582--16474634 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16474572 GTTGGCTTAG
*
16474582 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16474608 GCATACGGAGTTGATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16474634 G
1 G
16474635 ATCGGGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16474828 original size:26 final size:26
Alignment explanation
Indices: 16474792--16474841 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16474782 GTTGACTTAG
*
16474792 GCATGCGGAGTTCA-TCGCCAGTCTGA
1 GCATACGGAGTTCATTC-CCAGTCTGA
16474818 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16474842 AAGATCGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:16475013 original size:26 final size:26
Alignment explanation
Indices: 16474977--16475029 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16474967 GTTGGCTTAG
16474977 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16475003 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16475029 G
1 G
16475030 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16475312 original size:13 final size:13
Alignment explanation
Indices: 16475294--16475320 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16475284 TGCACATTAT
16475294 GCCTCTCTGATCG
1 GCCTCTCTGATCG
16475307 GCCTCTCTGATCG
1 GCCTCTCTGATCG
16475320 G
1 G
16475321 TTGAGCACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCTCTCTGATCG
Found at i:16475390 original size:26 final size:26
Alignment explanation
Indices: 16475360--16475410 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16475350 TGACTTGGGT
16475360 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16475386 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16475411 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16475907 original size:26 final size:26
Alignment explanation
Indices: 16475856--16475908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16475846 GTTGGCTTAG
* *
16475856 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
16475882 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
16475908 G
1 G
16475909 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16478597 original size:26 final size:26
Alignment explanation
Indices: 16478560--16478612 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16478550 GTTGACTTAG
16478560 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16478586 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
16478612 G
1 G
16478613 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16480158 original size:26 final size:26
Alignment explanation
Indices: 16480122--16480174 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16480112 GTTGGCTTAG
16480122 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16480148 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16480174 G
1 G
16480175 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16480882 original size:26 final size:26
Alignment explanation
Indices: 16480845--16480897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16480835 GTTGACTTAG
16480845 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16480871 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
16480897 G
1 G
16480898 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16481383 original size:26 final size:26
Alignment explanation
Indices: 16481347--16481398 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16481337 TTGGCTTAGC
*
16481347 CATACGGAGTTC-TTTCCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
16481373 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16481399 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16482256 original size:26 final size:26
Alignment explanation
Indices: 16482220--16482270 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16482210 TAACTTAGGG
16482220 ATACGAAGTTCA-TCCCTAGTCTAAGC
1 ATACGAAGTTCATTCCC-AGTCTAAGC
16482246 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16482271 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:16482439 original size:26 final size:26
Alignment explanation
Indices: 16482402--16482454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16482392 GTTCGCTTAG
*
16482402 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16482428 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16482454 G
1 G
16482455 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16483658 original size:26 final size:26
Alignment explanation
Indices: 16483622--16483677 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16483612 TGGGTTGGCT
16483622 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
16483648 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16483674 TAAG
1 TAAG
16483678 ATCAAGGACC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16484032 original size:26 final size:26
Alignment explanation
Indices: 16483995--16484047 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16483985 GTTCGCTTAG
16483995 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16484021 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
16484047 G
1 G
16484048 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16484745 original size:26 final size:26
Alignment explanation
Indices: 16484716--16484768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16484706 GTTGACTTAG
*
16484716 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCCT-AGTCTAA
16484742 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16484768 G
1 G
16484769 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16485573 original size:158 final size:158
Alignment explanation
Indices: 16484742--16485893 Score: 819
Period size: 158 Copynumber: 7.2 Consensus size: 158
16484732 CTCAGTCTAA
* ** * * * * *
16484742 GCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGA-CGGACC-AGGGTTGTGGCAGCAGGATCGA
* * * * * *
16484805 CAGCACGCA-GTGGGATCGGGCCGATCCCGGGCTTGCGCATTCTGCGTCTCCAATC-GACTGAGC
63 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGC
* * * *
16484868 GCCCGCACGCCCGTTTTGTGGTTTGGCCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGG-CTTAG
* * * **
16484900 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTGGGA-CTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACC-AGGGTTGTGGCAGCAGGATC-GAC
* * * * * * ** * * * *
16484964 AGAACACAGAGGGGGACCGGGTCGATCCTCAGTTTGTACATTCTGCCTCT-CTAACCGACTGAGC
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGC
* * *
16485028 ACCCACACGCTCGATTCGTGGGTTGACTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * **
16485059 GCATACGAAGTTCATTCCCTGTTTAAG-ATCAGATCGGACCGAGGGTTGCGACAATAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGA-CGGACC-AGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * * ** *
16485123 AGCACACAGGGAGGATCAGGTCGGTCCTCGGCTTGCACATTCTGCCTCTCTGGCCGG-CTGACCA
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGCA
* *
16485187 CCTGGACGCACGCTCGTTTCATGGGTTGACTTAG
129 CC----CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
16485221 GCATACGGAGTTCATTCCCA-GTCTAAGATCGA-ATCAGACCGAGGGTTG-GGACAGTAAGACCA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGA-CGGACC-AGGGTTGTGG-C----AG--C-
* *
16485283 GTAGCGGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT
55 --A---GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * *
16485348 GATC-GACTGAGCACCAGTACGCTCATTTCGTGGGTTGGCTTAG
115 GATCGGTCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16485391 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACC-AGGGTTGTGGCAGCAGGATCGACA
* * * *
16485456 GCACGCAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGGCTCTCCGATCGGTC-GAGCGC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGCAC
* **
16485520 CCGCACGCCCGTTTTTTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
16485549 GTATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAGGAGATGTGGCAGCAGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCAGG-GTTGTGGCAGCAGGATC-GAC
* * * * * * * *
16485613 AGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCTGGTCGG-CTCAGT
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGC
* * ** *
16485677 GCCCGCACGCTCGTTTCATGGGTTGATTTAT
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
16485708 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTGGACCGAGGATTGTTGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGAC-GGACC-AGGGTTGTGGCAGCAGGATCGA
** ** * *
16485771 CAGCACATAGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGG-CTGAGC
63 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGC
*
16485835 ACCCGCACGCTCGTTTCGTGGGTTAGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16485866 GCACATGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16485894 ATACGAAGTT
Statistics
Matches: 782, Mismatches: 169, Indels: 85
0.75 0.16 0.08
Matches are distributed among these distances:
157 5 0.01
158 334 0.43
159 185 0.24
160 62 0.08
161 1 0.00
162 62 0.08
163 3 0.00
164 1 0.00
166 3 0.00
169 3 0.00
170 59 0.08
171 3 0.00
173 1 0.00
174 60 0.08
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16485785 original size:317 final size:317
Alignment explanation
Indices: 16484742--16485893 Score: 1106
Period size: 317 Copynumber: 3.6 Consensus size: 317
16484732 CTCAGTCTAA
** * *
16484742 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
16484807 GCACGCA-GTGGGATCGGGCCGATCC-CGGGCTTGCGCATTCTGCGTCTCCAATCGACTGAGCGC
66 GCACACAGGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
* *
16484870 CCGCACGCCCGTTTTGTGGTTTGGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
130 CCGCACGCCCGTTTCGTGGGTTGG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** * ** * * *
16484935 GGACCGAGGGTTGTGGTAGTGGGACTGACAGAACACAGAGGGGGACCGGGTCGATCCTCAGTTTG
194 GGACCGAGGGTTGTGGCAGCAGGACTGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTG
* * * *
16485000 -TACATTCTGCCTCTCTAACCGACTGAGCACCCACACGCTCGATTCGTGGGTTGACTTAG
259 CT-CATTCTGCCTCTCTGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
16485059 GCATACGAAGTTCATTCCCT-GTTTAAGATCAGA-TCGGACCGAGGGTTGCGACAATAGGATCGA
1 GCATACGAAGTTCATT-CCTAGTCTAAGATCAGACT-GGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * ** *
16485122 CAGCACACAGGGAGGATCAGGTCGGTCCTCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGACCA
64 CAGCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* * * * **
16485187 CCTGGACGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
129 CC----CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
* * * *
16485251 GAATCAGACCGAGGGTTG-GGACAGTAAGACCAGTAGCGGGATCGACAGCATGCAG-GGGGGACC
189 CAGTCGGACCGAGGGTTGTGG-C----AG--CAGGA-C----T-GACAGCATGCAGAGGGGGACC
* * * * *
16485314 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCACCAGTACGCTCATTTCGT
241 GGGCCGATCCCCAGCTTGCTCATTCTGCCTCTCTGATCGACTGAGCACCCGCACGCTCGTTTCGT
*
16485379 GGGTTGGCTTAG
306 GGGTTGACTTAG
** * * * * * *
16485391 GCATACGAAGTTCATTCC-ATGTCTAAGCCCCAGTC-GAACCAAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCTA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGA
* * * *
16485454 CAGCACGCAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGGCTCTCCGATCGG-TCGAGC
64 CAGCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCT-GAGC
* ** * * *
16485518 GCCCGCACGCCCGTTTTTTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
128 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* *
16485583 CGGACC-AGGAGATGTGGCAGCAGGACTGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCT
193 CGGACCGAGG-GTTGTGGCAGCAGGACTGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCT
* * * * ** * * *
16485647 TGCTCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGATTTAT
257 TGCTCATTCTGCCTCTCTGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16485708 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGATTGTTG-TAGCAGGATCGAC
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTG-CGACAGCAGGATCGAC
* * * * *
16485772 AGCACATAGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCAC
65 AGCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
* * * *
16485837 CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCACATGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16485894 ATACGAAGTT
Statistics
Matches: 667, Mismatches: 132, Indels: 72
0.77 0.15 0.08
Matches are distributed among these distances:
316 15 0.02
317 280 0.42
318 48 0.07
319 1 0.00
320 2 0.00
321 44 0.07
322 25 0.04
324 2 0.00
325 2 0.00
327 8 0.01
328 57 0.09
329 2 0.00
331 3 0.00
332 166 0.25
333 12 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCAGGACTGACAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCT
CATTCTGCCTCTCTGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16486906 original size:158 final size:158
Alignment explanation
Indices: 16486616--16487117 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
16486606 CCCAATCTAA
* ** ** * ** *
16486616 GCATACGAAGTTCATTTCCA-GTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGTAGGATCGAC
1 GCATACGGAGTTCATTT-CATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
16486680 AGTATG-TAGGAGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCG
65 AGCACGCAAAGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTC-TCCACTGACTGAGCA
*
16486744 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
16486774 GCATAGGGAGTTCATTTCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGATCGGTA
1 GCATACGGAGTTCATTTCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
16486839 GCACGCAAAGAGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCACTGACTCAGCACC
66 GCACGCAAAGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCACTGACTGAGCACC
* * * *
16486904 CGCACTCTCATTTCATGGGTTGACTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * *
16486932 GCATACGGAGTTCA-TTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTGAC
1 GCATACGGAGTTCATTTCAT-GTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
*** * * * * *
16486996 AGCACGTTGAGGGGGA-TCAGGCCGAT-CCTGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAG
65 AGCACGCAAAGAGGGACT-GGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-ACT-GACTGAG
**
16487058 -TGCCGACACGCTCGTTTCGTGGGTTGGCTTAG
127 CACCCG-CACGCTCGTTTCGTGGGTTGGCTTAG
* *
16487090 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTTCATGTCTAAGC
16487118 ATACAGAGTT
Statistics
Matches: 274, Mismatches: 62, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 34 0.12
158 200 0.73
159 40 0.15
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTTCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAAGAGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCACTGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16487140 original size:26 final size:26
Alignment explanation
Indices: 16487090--16487142 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16487080 GTTGGCTTAG
*
16487090 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16487116 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16487142 G
1 G
16487143 ATCAGACGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16488851 original size:158 final size:158
Alignment explanation
Indices: 16488376--16488869 Score: 506
Period size: 159 Copynumber: 3.1 Consensus size: 158
16488366 CCCAGTGTAA
* * * *
16488376 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGGGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
16488441 GCATGCTGGGGGGGATCGGGCCGATCCTCGACTCGTGCATTCTACCTCTTCGACCGACTGACCAC
66 GCATGC-AGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAACGC
* * * ** **
16488506 CCGCATGCCCGTTTCACGATTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
** * ** ** * *
16488535 GGGTAGGGAGTTCATTCCGTGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
16488599 AGCATGCAGAGTGGGATCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGTTCAACG
65 AGCATGCAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAACG
*
16488664 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * **
16488694 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
16488759 GCACGCAGGGGGGATCGTGCCGGTCC-CTGGCTTGCGCATTCTACCTTTTCGACCGGCTGAGCGC
66 GCATGCAGGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTCTACCTCTTCGACCGGCTGAACGC
*
16488823 CCGTACGCTCATTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
16488852 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16488870 ATTTCTAAGC
Statistics
Matches: 266, Mismatches: 65, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 89 0.33
159 173 0.65
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTTCGACCGGCTGAACGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16488902 original size:26 final size:26
Alignment explanation
Indices: 16488852--16488903 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16488842 GTTGGCTTAG
*
16488852 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16488878 GCATACGGAGTTCGTTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16488904 CATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16489255 original size:26 final size:26
Alignment explanation
Indices: 16489219--16489271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489209 GTTGACTTAG
16489219 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16489245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16489271 G
1 G
16489272 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16489690 original size:157 final size:156
Alignment explanation
Indices: 16489245--16489744 Score: 463
Period size: 157 Copynumber: 3.2 Consensus size: 156
16489235 CCCAGTCTAA
* * *
16489245 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGTGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GA-CGGATCGAGTGTTGCGGCAGCAGGATCGACA
* * * * * * ** *
16489310 GCACGCA-GGAGGGACCGGGCCGATCCCCGGCTTGCGAATTTTGCCTTTCTAGCCGACTGAGCGC
64 GCACGCAGGGGGGGATCGGGCCGAT-CCTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGTGC
* *
16489374 CCGCACGCCCTTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * *
16489403 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-GTCGACCGAGTGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGACG--GATCGAGTGTTGCGGCAGCAG-GATCGA
* * * * * * * *
16489465 CAGCACGCCGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATACCTCTTCGACCGGCTCAAT
62 CAGCACGCAGGGGGGGATCGGGCCGATCCT-GGCTTGCGCATTATGCCTCTCCGGCCGACTGAGT
* *
16489530 GCCCGAACGCTCATTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16489561 GCATACGGAGTTCATTCCCAGTTTAAGATCGACGGATCGAGAGTTGCGGTAGCAGGATCGACAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACGGATCGAGTGTTGCGGCAGCAGGATCGACAGC
* * *
16489626 ACGCAGGGGGGGATCGGGCC-AGTCACTGACTTGCGCATTCTGCCTCTCCGGCTGACTGAGTGCC
66 ACGCAGGGGGGGATCGGGCCGA-TC-CTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGTGCC
* ** *
16489690 CGCACGTTTGTTTCGTGGGTTGGCTAAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* *
16489718 GCATACGAAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16489745 CATACGGATA
Statistics
Matches: 267, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 5 0.02
157 146 0.55
158 112 0.42
159 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACGGATCGAGTGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGGATCGGGCCGATCCTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGTGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16490445 original size:159 final size:160
Alignment explanation
Indices: 16490222--16490620 Score: 396
Period size: 159 Copynumber: 2.5 Consensus size: 160
16490212 TTATGCGTTC
* * * * * * * *
16490222 TACCTCTTCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
1 TACCTCTCCAGCCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * ** * *
16490287 ATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGACCGGCAGCACGCAG-AGGG
66 ATTCCATGTCTAAGCACCAACCGGACCGAGGGTTATGACAGCAAGACCGACAGCACACAGCAGGG
** *
16490351 GGA-CTGGGCCAATCCCCATCTTGCGCATTA
131 GGATC-ACGCCAATCCCCAGCTTGCGCATTA
* * * * * *
16490381 TGCCTCTTC-GCCCAGCTCG-GTGCCCACACGCTTGTTTCATGGGTTGACTTATGCATACGGAGT
1 TACCTCTCCAG-CCAGCT-GAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * * * *
16490444 TCATTCCCA-GTCTAAG-ATCAATCGGACCGAGGGTTGTGATAGCAAGATCGACAGCACACAGCA
64 TCATT-CCATGTCTAAGCACCAACCGGACCGAGGGTTATGACAGCAAGACCGACAGCACACAGCA
* * *
16490507 GGGGGATCACGTCGATCCCCAGCTTGCGCATTC
128 GGGGGATCACGCCAATCCCCAGCTTGCGCATTA
** * * *
16490540 TACCTCTCCAGCTGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTC
1 TACCTCTCCAGCCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
16490605 ATTCCATGTCTAAGCA
66 ATTCCATGTCTAAGCA
16490621 TACGGAGTTC
Statistics
Matches: 192, Mismatches: 39, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
158 39 0.20
159 146 0.76
160 7 0.04
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (160 bp):
TACCTCTCCAGCCAGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAACCGGACCGAGGGTTATGACAGCAAGACCGACAGCACACAGCAGGG
GGATCACGCCAATCCCCAGCTTGCGCATTA
Found at i:16490628 original size:26 final size:25
Alignment explanation
Indices: 16490592--16490643 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16490582 GTTGGCTTAG
*
16490592 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
16490618 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
16490643 G
1 G
16490644 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:16497218 original size:26 final size:26
Alignment explanation
Indices: 16497182--16497234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16497172 GTGGACTTAG
16497182 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16497208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16497234 G
1 G
16497235 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16497504 original size:159 final size:160
Alignment explanation
Indices: 16497295--16497710 Score: 466
Period size: 159 Copynumber: 2.6 Consensus size: 160
16497285 GACCGGGCCA
* * **
16497295 ATCCCTGGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTG
1 ATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
* * * * * * * *
16497360 GCTTAGGCATAAGGAGTTCATTCCAT-TTGTAAGCCCCA-ACCGAATCGAGGGTTGTGGCAGCGG
66 GCTTAGGCATACGGAGTTCATTCCATAGTCTAAG-ACCAGACCGAACCAAGGGTTGCGGCAGCAG
*
16497423 GACCGACAG-TACGTAGAGGGGGA-TCGAGTTG
130 GACCGACAGCT-CGTAGAGGGGGACTCGA-TCG
* * * * *
16497454 ATCCCTGGCTTGTGCATTATGCCTCTCCAACCGGCTCAACACCCGTACGCTCGTTTTGTGGGTTG
1 ATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
* * * *
16497519 ACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCAGG
66 GCTTAGGCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGAACCAAGGGTTGCGGCAGCAGG
* * *
16497583 ATCGACAGCTCGTAGGGGGGGACTGGATCG
131 ACCGACAGCTCGTAGAGGGGGACTCGATCG
* * * * ** *
16497613 ATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTAATTTCATGGGTTG
1 ATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
*
16497678 GCTTAGGCATACGGAGTCCATTCCAT-GTCTAAG
66 GCTTAGGCATACGGAGTTCATTCCATAGTCTAAG
16497711 CATACAGAGT
Statistics
Matches: 213, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 3 0.01
159 205 0.96
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
ATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATAGTCTAAGACCAGACCGAACCAAGGGTTGCGGCAGCAGG
ACCGACAGCTCGTAGAGGGGGACTCGATCG
Found at i:16497713 original size:26 final size:26
Alignment explanation
Indices: 16497684--16497736 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16497674 GTTGGCTTAG
*
16497684 GCATACGGAGTCCATTCC-ATGTCTAA
1 GCATACAGAGTCCATTCCTA-GTCTAA
*
16497710 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATTCCTAGTCTAA
16497736 G
1 G
16497737 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCTAGTCTAA
Found at i:16498093 original size:26 final size:26
Alignment explanation
Indices: 16498063--16498115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16498053 GTTGACTTAG
16498063 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
16498089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16498115 G
1 G
16498116 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16498843 original size:26 final size:26
Alignment explanation
Indices: 16498765--16498836 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
16498755 GTTGACTTAG
*
16498765 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16498791 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16498817 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
16498837 ATTTAAGATC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16499648 original size:26 final size:26
Alignment explanation
Indices: 16499619--16499671 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16499609 GTTGGCTTAG
*
16499619 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16499645 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16499671 G
1 G
16499672 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16500029 original size:365 final size:354
Alignment explanation
Indices: 16499235--16500065 Score: 895
Period size: 365 Copynumber: 2.3 Consensus size: 354
16499225 CCGGCTTGCG
* * *
16499235 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
*
16499300 GTTCATTCCCAGTCAAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCG
* * * * * *
16499365 ATAGCACGCAGGAGAGGATCAGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAG
131 ATAGCACACAGGAGAGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAG
** * * ***
16499430 CACCTGCATGCTCATTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGATTGGAC
196 CACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGACCAGAC
* *
16499495 CAGACTGAGGGTTGTCATAGTAGGATCGACAGCACGCGAGAGGGACCGGGCCAGTCCCCGACTTA
261 CAGACTGAGGGTTGTCAAAGTAGGATCGACAGCACGCGAGAGGGACCGGGCCAGTCCCCGACTGA
* * *** *
16499560 CGCATTCTACCTCTCTAGCTGGCTGAGCG
326 CGCATTATACCTCTCCAGCCAACTGAGCA
* *
16499589 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
*
16499654 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCG
* * * *
16499719 GTAGCACACAGG-GGGGACCGAGTC-GATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGA
131 ATAGCACACAGGAGAGGACC-AGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGA
* * * * * * *
16499782 GCGCCCACACGTTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTT-ATTCCATGTCTAAGCCCCA
195 GCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCA-GTCTAAG-ACCA
* * * *
16499846 G-TCGGACTGAGGGTTGTGGCAGCAAGACTGGCAACGGGATCGGCAGCACGC-AGAGGGGATCGG
258 GACCAGACTGAGGGTTGT--CA--AAG--T----A--GGATCGACAGCACGCGAGA-GGGACCGG
* ** * * *
16499909 G-CTGATCCCCGACTGGTGCATTATGCCTCTCCGGCCAATTGAGCA
310 GCCAG-TCCCCGACTGACGCATTATACCTCTCCAGCCAACTGAGCA
* * * *
16499954 CCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTATACA-CATACG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA-AGCATACG
* * * ** * *
16500017 GAGTTGATTCCCAGTCTATGATCGGAGAGGACGGAGGGTTACGGCAGCA
64 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCA
16500066 AGATCGACAG
Statistics
Matches: 396, Mismatches: 62, Indels: 27
0.82 0.13 0.06
Matches are distributed among these distances:
352 6 0.02
353 95 0.24
354 137 0.35
355 2 0.01
357 2 0.01
359 1 0.00
363 1 0.00
364 9 0.02
365 142 0.36
366 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCG
ATAGCACACAGGAGAGGACCAGGCTGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAG
CACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGACCAGAC
CAGACTGAGGGTTGTCAAAGTAGGATCGACAGCACGCGAGAGGGACCGGGCCAGTCCCCGACTGA
CGCATTATACCTCTCCAGCCAACTGAGCA
Found at i:16502104 original size:26 final size:26
Alignment explanation
Indices: 16502075--16502127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16502065 GTTGACTTAG
*
16502075 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16502101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16502127 G
1 G
16502128 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16502395 original size:366 final size:367
Alignment explanation
Indices: 16501880--16502691 Score: 1022
Period size: 366 Copynumber: 2.2 Consensus size: 367
16501870 TCATTTTGTA
* * * *
16501880 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG-CTGGACCAAGGGTTGTGGTA
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGTC-GGATCGAGGGTTGTGGCA
* * * *
16501944 GCAGGACCGGCAGCAGGATCGATAGCACGCAAAGGGTGATCGAGCTGATCCCCGACATGCGCCTT
65 GCAGGACCGGCAGCAGGATCGACAGCACGCAAAGGGAGATCGAGCTAATCCCCGACATGCGCATT
* * * *
16502009 ATGCATCTCCGACTGGCCTCTCT-GACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
130 ATGCATCTCCGACCGGCCTCTCTAG-CCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTT
* * * ** *
16502073 AGGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
194 AGGCATACAGAGTTCATCCCCAATCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGAACCGG
* * * * * *
16502138 ACCAAGGGTTGA-GGCAGTAGGATCGATAGCATGAAGG-GGGATCGAGTCGATCCCCGGCTTGTG
259 ACCAAGGGTT-ACGACAGCAGGATCGATAGCATGAAGGAGGAACCGAGTCGATCCCCAGCTTGTA
* ** * *
16502201 CATTCTGCCTCTTCGATTGACTGAGCACCCGCACGCCCGTTTCATG
323 CATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTC-GG
* * *
16502247 GGTTGGTTTCGGCATAGGGAGTTCATT-CATGTCTAAGCTCCAGTCGGATCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGTCGGATCGAGGGTTGTGGCAG
* * * * * **
16502311 CAGGACCGACAGCGGGATCGGCAGCACGCAGAGGGAGATCGGGCTAATCCCCGGTATGCGCATTA
66 CAGGACCGGCAGCAGGATCGACAGCACGCAAAGGGAGATCGAGCTAATCCCCGACATGCGCATTA
* * ** * *
16502376 TGCCTCTTCGACCGGCCTCTCTAGTGGGCTGAACGCCCGTACGCTCATTTTATGGGTTGACTTAG
131 TGCATCTCCGACCGGCCTCTCTAGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
16502441 GCATACAGAGTTCATCCCCAATCTAAGCGTAAAGAGTTCATTCCCTGTCTAAGATCGAACTGGAC
196 GCATACAGAGTTCATCCCCAATCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
* * * * * *
16502506 CGAGGGTTACGACAGCAGGATTGATAGCATGCAGGAGGAACCGGGTTGATCCCTAGCTTGTACAT
261 CAAGGGTTACGACAGCAGGATCGATAGCATGAAGGAGGAACCGAGTCGATCCCCAGCTTGTACAT
* * *
16502571 TCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCCCATTTCGG
326 TCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGG
*
16502613 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGTCGGATCGAGGGTTGTGGCAG
*
16502678 CGGGACCGGCAGCA
66 CAGGACCGGCAGCA
16502692 CGTAGAGGGG
Statistics
Matches: 377, Mismatches: 63, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
365 1 0.00
366 248 0.66
367 128 0.34
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (367 bp):
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGTCGGATCGAGGGTTGTGGCAG
CAGGACCGGCAGCAGGATCGACAGCACGCAAAGGGAGATCGAGCTAATCCCCGACATGCGCATTA
TGCATCTCCGACCGGCCTCTCTAGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATCCCCAATCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
CAAGGGTTACGACAGCAGGATCGATAGCATGAAGGAGGAACCGAGTCGATCCCCAGCTTGTACAT
TCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGG
Found at i:16502850 original size:159 final size:157
Alignment explanation
Indices: 16502474--16502856 Score: 371
Period size: 159 Copynumber: 2.4 Consensus size: 157
16502464 TAAGCGTAAA
* * * * *
16502474 GAGTTCATTCCCTGTCTAAGATC-GAACTGGACCGAGGGTTACGACAGCAGGATTGATAGCATGC
1 GAGTTCATTCCATGTCTAAGATCAG-ACCGGACTGAGGGTTACGACAGCAGGATTGACAGCACGC
** * ** * * *
16502538 AGGAGGAACCGGGTTGATCCCTAGCTTGTACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATG
65 AGGAGGAACCGGCCTGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGAATG
* *
16502603 CCCATTTCGGGGTTGGCTTAGGCATAGG
130 CCCATTTCGGGGTTGACTTAGGCATACG
** * ** * * ** *
16502631 GAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGACCGGCAGCACG
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACT-GAGGGTTACGACAGCAGGATTGACAGCACG
* * * * *
16502694 TAGAGGGGGACCAGGCCT-ATCCCCAGCTTACACATTATGCCTCTCCGATCGGCTCAGCTCCCGA
64 CAG-GAGGAACC-GGCCTGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGA
* *
16502758 ATGCTCGTTTCGTGGGTTGACTTAGGCATACG
127 ATGCCCATTTCG-GGGTTGACTTAGGCATACG
*
16502790 GAGTTCATT-CATAGTCTAAGATCAGACCGGACTAAGGGTTACGACAGCAGGATTGACAGCACGC
1 GAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATTGACAGCACGC
16502854 AGG
65 AGG
16502857 GTCTCCAGTC
Statistics
Matches: 173, Mismatches: 44, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
157 45 0.26
158 62 0.36
159 65 0.38
160 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATTGACAGCACGCA
GGAGGAACCGGCCTGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGAATGC
CCATTTCGGGGTTGACTTAGGCATACG
Found at i:16503479 original size:26 final size:26
Alignment explanation
Indices: 16503443--16503493 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16503433 TTGGCCAAGG
*
16503443 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGTTCATTCCAAGTCTAAA
*
16503469 CATACGGAGTTGATTCCAAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
16503494 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAA
Found at i:16503584 original size:11 final size:11
Alignment explanation
Indices: 16503564--16503596 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16503554 CCCGGGGAAC
*
16503564 CATCGCCGGAG
1 CATCGTCGGAG
16503575 CATCGTCGGAG
1 CATCGTCGGAG
16503586 CATCGTCGGAG
1 CATCGTCGGAG
16503597 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16504211 original size:26 final size:26
Alignment explanation
Indices: 16504174--16504226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16504164 GTTGACTTAG
16504174 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16504200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16504226 G
1 G
16504227 ATTGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16506157 original size:26 final size:26
Alignment explanation
Indices: 16506107--16506158 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16506097 GTTGACTTAG
* *
16506107 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
16506133 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
16506159 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:16506524 original size:513 final size:510
Alignment explanation
Indices: 16505561--16506645 Score: 1217
Period size: 513 Copynumber: 2.1 Consensus size: 510
16505551 TCTGGTCGGT
* * *
16505561 TGAGCGTCCGCACGCTCATTTC-GTGGGTTGACTTAGGCATACTGAGTTCAT-CCCAGTCTAAGC
1 TGAGCGCCCGCAAGCTCATTTCAG-GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* **
16505624 ATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGC
65 ATACAAAGTTCATTCACAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * *
16505689 ACGCAGAGGGGACCGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAGTCCGCTGAGCGCCTGC
130 ACGCAGAGGGGACCGGCCAATCCTCCACTTGCACATTCTACCTCTCCAGTCCGCTGAGCGCCCGC
16505754 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
195 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
* * * * * * *
16505819 GAGGGTTCTGGCAGTGGGACTGGTAGCACGCGCGAGGGGATCGGGCCGATCCCGGCTTGTGCATT
260 GAGGGTTCTGGCAGCGAGACCGGTAGCACACGCGAGGGGAACGGGCCGATCCCGACTTGAGCATT
* * ** ** **
16505884 ATGCCTCTCTGGCTGACTTTGCGCCCTTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
325 ATACATCTCCAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
* * * * * * * * * * *
16505949 CATTCCTTGTCTGAGCCCCAGTCAAACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGGTA
390 CATTCCTAGTATAAGCACCAGACAAACCAAGGGTAGCGATAGCAGGACCAGCAGCAGGATCGGTA
* *
16506014 GCAC-GCAGAGGGGGACCAGGCTAATCCCCGACTTGCGTATT-ATGCCTCTCCTA-C-GAC
455 GC-CTGCAGAGGGGGACC-GGCTAATCCCC-ACCTGCGCATTCA-GCCTCTCC-AGCAGAC
* * *
16506071 TGAGCGCCCGCACAG-TCGTTTTAGGGGTTGACTTAGGCATACAGAGTTCATCCCCATTCTAAGC
1 TGAGCGCCCGCA-AGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * * *
16506135 ATACAGAGTTCATTCACAGTCTAAAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
65 ATACAAAGTTCATTCACAGTCT--AAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
16506200 GCACGCAG-GGAGGACCGAGCCAATCC-CCACCTTGCACATTCTACCTCT-CTGGCTGGCTGAGT
128 GCACGCAGAGG-GGACCG-GCCAATCCTCCA-CTTGCACATTCTACCTCTCCAGTC-CGCTGAGC
* * *
16506262 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CGCAGC
189 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * *
16506326 CGGACTGAGGGTTGTGGCAGCGAGACCGGTAGCACACAG-G-GGGGAACGGGCTGATCCCCGACT
254 CGGACCGAGGGTTCTGGCAGCGAGACCGGTAGCACAC-GCGAGGGGAACGGGCCGAT-CCCGACT
* * * * * *
16506389 TGAGCATTCTACATCTCCAGTTGGCTGAGCGCCCGCACGCTTGTTTCGTTGGTTGGCTTAGGCAT
317 TGAGCATTATACATCTCCAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * ** * *
16506454 ACGGAGTTCATTCCTAGTATAAG-ATCAGACTGGACCAAGGGTAGCGATGGTAGGACCAGCAGCA
382 ACAGAGTTCATTCCTAGTATAAGCACCAGAC-AAACCAAGGGTAGCGATAGCAGGACCAGCAGCA
* * * * *
16506518 GGATCGGTTGCCTGCGGGGGGGGACCGGCTGATCCCCACCTGTGCATTCAGCCTCTCCAGCAGAC
446 GGATCGGTAGCCTGCAGAGGGGGACCGGCTAATCCCCACCTGCGCATTCAGCCTCTCCAGCAGAC
* * *
16506583 TGAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
1 TGAGCGCCCGCAAGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
16506646 ATCAGATAGG
Statistics
Matches: 476, Mismatches: 82, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
510 43 0.09
511 51 0.11
512 89 0.19
513 208 0.44
514 85 0.18
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (510 bp):
TGAGCGCCCGCAAGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TACAAAGTTCATTCACAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCA
CGCAGAGGGGACCGGCCAATCCTCCACTTGCACATTCTACCTCTCCAGTCCGCTGAGCGCCCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
AGGGTTCTGGCAGCGAGACCGGTAGCACACGCGAGGGGAACGGGCCGATCCCGACTTGAGCATTA
TACATCTCCAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
ATTCCTAGTATAAGCACCAGACAAACCAAGGGTAGCGATAGCAGGACCAGCAGCAGGATCGGTAG
CCTGCAGAGGGGGACCGGCTAATCCCCACCTGCGCATTCAGCCTCTCCAGCAGAC
Found at i:16507691 original size:26 final size:27
Alignment explanation
Indices: 16507655--16507708 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
16507645 GTTGACTTAG
16507655 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
*
16507681 GCATACGGAGTTCATTCTCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
16507708 G
1 G
16507709 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:16508026 original size:26 final size:26
Alignment explanation
Indices: 16507996--16508048 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507986 GTTGGCTTAG
16507996 GCGTACGGAGTTCATT-CCATGTCTAA
1 GCGTACGGAGTTCATTCCCA-GTCTAA
16508022 GCGTACGGAGTTCATTCCCAGTCTAA
1 GCGTACGGAGTTCATTCCCAGTCTAA
16508048 G
1 G
16508049 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCGTACGGAGTTCATTCCCAGTCTAA
Found at i:16508756 original size:26 final size:26
Alignment explanation
Indices: 16508716--16508765 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16508706 GTTGACTTAG
*
16508716 GCATACGGAGCTCATCCCCAGTCTCA
1 GCATACGAAGCTCATCCCCAGTCTCA
* *
16508742 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGCTCATCCCCAGTCT
16508766 AAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAGTCTCA
Found at i:16509205 original size:156 final size:155
Alignment explanation
Indices: 16508742--16509239 Score: 443
Period size: 156 Copynumber: 3.2 Consensus size: 155
16508732 CCCAGTCTCA
*
16508742 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGA-TCGAGGGTTGCGACAGCAGGATGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCGGACT-GAGGGTTGCGACAGCAGGATCAC
* * * * * * * *
16508805 AGCACACAGGGGGGACCAGGCCAATCCCTGATTTGCGCATTCTGCCTCTCCGGCCGG-TGAGTGC
64 AGCACATA-GGGGGATC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAGTGC
* *
16508869 CCGCACGCCCGTTTCATGGGTTGGCTCAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * * **
16508898 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGCGACAGCAGGA-TCAC
* * * * * *
16508962 AGCACATATAGGGGGATCGGGCTGATTCTCGACTTGCGCATTATGCCTCTTC-AGCCAGCTCAGT
64 AGCAC--ATAGGGGGATC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGA-CCGGCTAAGT
* ** ** *
16509026 GCTCGCACGCTTATTTCGCGGGTTGACTTAG
125 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* **
16509057 GCATACAAAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGA-GGTTGCGACAATAGGATCACC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCA-C
* * ** *
16509120 AGCACGTAGGGGAGATCGGTCGATCCCCGACTTGCATATTCTGCCTCTTCGACCGGCTAAGCGCC
64 AGCACATAGGGG-GATCGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAGTGCC
16509185 CGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
16509213 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
16509240 CATACGGAGT
Statistics
Matches: 263, Mismatches: 65, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 6 0.02
156 126 0.48
157 17 0.06
158 55 0.21
159 56 0.21
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCACAG
CACATAGGGGGATCGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTAAGTGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16509243 original size:26 final size:26
Alignment explanation
Indices: 16509213--16509265 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16509203 GTTGGCTTAG
*
16509213 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
16509239 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16509265 G
1 G
16509266 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16510587 original size:25 final size:26
Alignment explanation
Indices: 16510550--16510601 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
16510540 GTTGACTTAG
16510550 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
16510575 GCATAC-GATGTTCACTCTCAGTCTAA
1 GCATACGGA-GTTCACTCCCAGTCTAA
16510601 G
1 G
16510602 ATCGACCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 11 0.46
26 11 0.46
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16511051 original size:157 final size:157
Alignment explanation
Indices: 16510575--16511103 Score: 597
Period size: 159 Copynumber: 3.4 Consensus size: 157
16510565 CCCAGTCTAA
* * * * **
16510575 GCATAC-GATGTTCACTCTCAGTCTAAGATC-GACCAGACCGAGGGTT-TCAACAGCAGGATCGA
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGT-GGCAGCAGGATCGA
* * *
16510637 CAGCACGCAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCAC
64 TAGCACGCAGGGGGACTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTAGGCTGAGCAC
* * *
16510702 CCGTATGC-CTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTC-ATTTCGTGGGTTGGCTTAG
* * * * *
16510731 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG-TCGGACCGAGGGTTGTGGCAGCGGGATTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
16510794 TAGCACGCAGAGCGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGATAGGCTCAGC
64 TAGCACGCAG-G-GGGACTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTAGGCTGAGC
*
16510859 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * *
16510890 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTGTGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * *** * * *
16510955 GCACGTAGGGGGAATGGGCTGGTCCCTAACTTATGCATTCTGCCTCTCCGGTAGGCTGAGCACCT
66 GCACGCAGGGGGACTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTAGGCTGAGCACCC
*
16511020 GCACGCTCATTTCGTGGGTTGGCTTAA
131 GCACGCTCATTTCGTGGGTTGGCTTAG
* *
16511047 GCATACGGAGTTCA-TCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGA
16511104 CCAGCAGCAG
Statistics
Matches: 312, Mismatches: 51, Indels: 21
0.81 0.13 0.05
Matches are distributed among these distances:
155 23 0.07
156 35 0.11
157 117 0.38
158 8 0.03
159 125 0.40
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGACTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTAGGCTGAGCACCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16511257 original size:26 final size:26
Alignment explanation
Indices: 16511228--16511280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16511218 GTTGACTTAG
*
16511228 GCATACAGAGTTTA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
16511254 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16511280 G
1 G
16511281 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16511449 original size:26 final size:26
Alignment explanation
Indices: 16511413--16511464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16511403 TTGGCTTAGC
16511413 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
16511439 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16511465 GTTGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16512484 original size:26 final size:26
Alignment explanation
Indices: 16512454--16512506 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16512444 GTTGACTTAG
*
16512454 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
* * *
16512480 GCATATGCAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
16512506 G
1 G
16512507 ATCGATAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:16513469 original size:26 final size:26
Alignment explanation
Indices: 16513439--16513491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16513429 GTTGGCTTAG
*
16513439 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16513465 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16513491 G
1 G
16513492 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16513825 original size:26 final size:26
Alignment explanation
Indices: 16513789--16513841 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16513779 GTTGACTTAG
*
16513789 GCATACAGAGTTTATCCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* * *
16513815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
16513841 G
1 G
16513842 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:16514479 original size:184 final size:185
Alignment explanation
Indices: 16514146--16514502 Score: 441
Period size: 184 Copynumber: 1.9 Consensus size: 185
16514136 ACGGAGTTCA
* ** * *
16514146 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCATGGGGGG
1 TTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGGCAACAGGATCGACAGCACGCATGGGGGG
* * * * * * * * * *
16514211 ACCGAGCCGGTCCTCGGCTTGCGCATTTTGCCTCTCCGGCCGGTTGAGTACCCGCACGCTCGTTT
66 ACCGAGCCGATCCCCGACGTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCACACCCGTTT
*
16514276 CGTGTGTTGACTTAGGCATACAGAGTTCATCCCCAT-TCTAAGCATATGGAGTTTT
131 CGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATATGGAGTTTT
* * *
16514331 TTCCCAGTCTAAGATTGAA-CTAGACCGAGGGTTACGGCAACAGTATCGACAGCACGTA-GGGGG
1 TTCCCAGTCTAAGATCGAATC-AGACCGAGGGTTACGGCAACAGGATCGACAGCACGCATGGGGG
* * *
16514394 GACCGGGCCGATCCCCGACGTGCGCATTCTGCCCCTCTGGCCGGCTGAGCACCTGCACACCCGTT
65 GACCGAGCCGATCCCCGACGTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCACACCCGTT
* ** *
16514459 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
130 TCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
16514503 CCTAGCTGGT
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
183 4 0.03
184 92 0.64
185 48 0.33
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (185 bp):
TTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGGCAACAGGATCGACAGCACGCATGGGGGG
ACCGAGCCGATCCCCGACGTGCGCATTCTGCCCCTCCGGCCGGCTGAGCACCCGCACACCCGTTT
CGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATATGGAGTTTT
Found at i:16515747 original size:159 final size:156
Alignment explanation
Indices: 16515371--16515803 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 156
16515361 CCTAGTCTAA
* * **
16515371 GCATACAGAGTTCATT-CCTAGTCTAAGATCAAACCAAACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGAC
* *
16515435 AGCACGCAGGGGGACCGAGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGACTAAGCACC
64 AGCACGCAGGGGGACCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTAAGCACC
* * *
16515500 CGCACACCCGTTTCGTGGGTTGGCTTAG
129 CGAACACCCATTTCGTGGGTTGACTTAG
* * ** *
16515528 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGATGTG-GCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCTGTCTAAGATC-AGACCGGACCGAGGG-T-TGCGCAGCAGGATCGA
* * * *** * * * *
16515591 CAGCATGCAGAAGGGGACCGGGTTGATCCCTGGCTTGCGCATTATGTCTCTCCGATCGGCTCAGT
63 CAGCACGCAG--GGGGACCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTAAGC
* * *
16515656 GCCCGAACGCTCATTTCGTGGGTTGACTTAG
126 ACCCGAACACCCATTTCGTGGGTTGACTTAG
* * * *
16515687 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGATCAAGGGTTGCAGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACA
* * * ** * *
16515752 GCACGTAGGGGGGACC-AGGCCAGTCCCCGGCTTACGCATTCTGCCTCTCCGA
65 GCACGCA-GGGGGACCGAGTCGA-TCCCCAACTTGCGCATTATGCCTCTCCGA
16515804 CCAGTTGAGC
Statistics
Matches: 219, Mismatches: 46, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
157 56 0.26
158 40 0.18
159 122 0.56
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACGCAGGGGGACCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTAAGCACCCG
AACACCCATTTCGTGGGTTGACTTAG
Found at i:16515872 original size:26 final size:26
Alignment explanation
Indices: 16515842--16515897 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16515832 TGAGTTGGCT
*
16515842 TAAGCATACTGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
16515868 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16515894 TAAG
1 TAAG
16515898 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16516067 original size:26 final size:26
Alignment explanation
Indices: 16516038--16516090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16516028 GTTGACTTAG
*
16516038 GCATACGGAGCTCGTCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
16516064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
16516090 G
1 G
16516091 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:16516410 original size:26 final size:26
Alignment explanation
Indices: 16516380--16516432 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16516370 GTTGGCTTAC
*
16516380 GCATAAAGATTTCATT-CCATGTCTAA
1 GCATAAAGAGTTCATTCCCA-GTCTAA
**
16516406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
16516432 G
1 G
16516433 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:16517118 original size:26 final size:26
Alignment explanation
Indices: 16517089--16517141 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16517079 GTGGACTTAG
16517089 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16517115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16517141 G
1 G
16517142 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16517619 original size:26 final size:27
Alignment explanation
Indices: 16517589--16517642 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
16517579 GATGGCTTAG
16517589 GCATACA-GAGTTCATTC-CACGTCTAA
1 GCATACAGGAGTTCATTCACA-GTCTAA
16517615 GCATACAGGAGTTCATTCACAGTCTAA
1 GCATACAGGAGTTCATTCACAGTCTAA
16517642 G
1 G
16517643 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 7 0.27
27 17 0.65
28 2 0.08
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACAGGAGTTCATTCACAGTCTAA
Found at i:16518005 original size:158 final size:158
Alignment explanation
Indices: 16517679--16518169 Score: 391
Period size: 158 Copynumber: 3.1 Consensus size: 158
16517669 GCAGGACCAG
* ** *
16517679 CAGCAGGATCGATAGCATGCAGGGGGGACCGAGCCGATCCCTGGCTTACGCAATCCGCCTCTTCG
1 CAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCTGGCTTACGCAATACGCCTCTTCG
* * * * *
16517744 GCCGGCTAAGCGCCTACACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GCCGGCTAAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
* * * * *
16517809 TAAGCCCCAGTCGGACTGAGGGTTGTGG
131 TAAGCCCCAGCCAGACCGAGGGTTGCGA
* * ** * *
16517837 CAGC-GAGATCGACAGCACACAGAGGGGGATCGGGCCGAT-CCTGGCTTGTGCATTATGCCTC-T
1 CAGCAG-GATCGACAGCACACAG-GGGGGACCGAGCCGATCCCTGGCTTACGCAATACGCCTCTT
* * *
16517899 CTGGCTGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-T
64 C-GGCCGGCTAAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
** *
16517963 AGTCTAAG-ATCTGACCAGACCGAGGGTTGCGA
128 -GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGA
* ** * * * ** * * * *
16517995 TAGCAGGATCGACAGCACGTAGGAGAGGATCGGGTTGATCCCCGGCTTACAC-ATTCTGCCTCTC
1 CAGCAGGATCGACAGCACACAGG-GGGGACCGAGCCGATCCCTGGCTTACGCAATAC-GCCTCTT
* * * ** * * * * * * *
16518059 CGGTCAGCTGAGTGCCCACACACTCATTTCGTGTGTTGGCTTAGGCATACAGAGTTCATTCCATG
64 CGGCCGGCTAAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* *
16518124 TCTAAGCCCCAGCCGGACCGAGGGTTGTGA
129 TCTAAGCCCCAGCCAGACCGAGGGTTGCGA
* *
16518154 TAGCAGGATTGACAGC
1 CAGCAGGATCGACAGC
16518170 GGGATCGACA
Statistics
Matches: 263, Mismatches: 58, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 137 0.52
159 115 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCTGGCTTACGCAATACGCCTCTTCG
GCCGGCTAAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACCGAGGGTTGCGA
Found at i:16518325 original size:26 final size:26
Alignment explanation
Indices: 16518277--16518326 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16518267 GCTTAGGCAC
*
16518277 ACGGAGTTCATTCCATGTTTAAGAAT
1 ACGGAGTTCATTCCATGTCTAAGAAT
16518303 ACGGAGTTCATTCC-TAGTCTAAGA
1 ACGGAGTTCATTCCAT-GTCTAAGA
16518327 TCAGACCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
ACGGAGTTCATTCCATGTCTAAGAAT
Found at i:16518599 original size:158 final size:158
Alignment explanation
Indices: 16518301--16518800 Score: 398
Period size: 158 Copynumber: 3.2 Consensus size: 158
16518291 ATGTTTAAGA
** ** * * * * *
16518301 ATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAAGGAAGCGACAGTAGGATCGGCAA
1 ATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCGGACCGAAGGTTGTGGCAGAAGGACCGACAA
** * * * * * * *** ** *
16518365 CACATAGGGTGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCT-CTAGCCAACAGAGTGCC
65 CACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGA-CTGGCTCAGCGCC
* * *
16518429 CGTATGCCCGTTTCATGGGTTGGCTTAGGC
129 CGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * *
16518459 GTAGGGAGTTCATTCCATGTCTAAGCCCAG-CTGGACCGAGGGTTGTGGCA-AAGGGACCGGCAG
1 ATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAAGGTTGTGGCAGAA-GGACCGACAA
* * *
16518522 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGCTCAGGGCC
65 CACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCC
* ** *
16518587 CGCACGCTCGTTTCCTGGGTTAACTTATGC
129 CGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * **** * * *
16518617 AAACAGAGTTCATTCCCA-GTCTAAGATTGGACCGGACTGAAGGTTGTGGCAGCAGGATCGACAA
1 ATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGGACCGAAGGTTGTGGCAGAAGGACCGACAA
* * * * * *
16518681 CATGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCT
65 CACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCC
* * *
16518746 GTACGCTCGTTTCGTAGGTTGGCTTAGGC
130 GCACGCTCGTTTCATGGGTTGGCTTAGGC
*
16518775 ATATGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
16518801 ATACGGAGTT
Statistics
Matches: 267, Mismatches: 67, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 30 0.11
158 199 0.75
159 36 0.13
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAAGGTTGTGGCAGAAGGACCGACAAC
ACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGC
Found at i:16519854 original size:159 final size:157
Alignment explanation
Indices: 16519553--16520018 Score: 348
Period size: 159 Copynumber: 2.9 Consensus size: 157
16519543 CTAAGATCGA
* * * *
16519553 TCGGACTAAGGGTTGTGGCAGGAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTT
1 TCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTAGCTT
* * * * * *
16519618 GCGCATTCTGCCTCTACGGCCAACTGAGCGCTTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTACGACCAACTCAGCGC-TCCATGCCCGTTTCATGGGTTGACTTAGGCATA
* * *
16519683 GGGAGTTTATTCCATGTCTAGGCCCCAG
130 CGAAGTTCATTCCATGTCTAGGCCCCAG
* * *
16519711 TCGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCT
1 TCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCTAGCT
* * * ** * **
16519776 TGTGCATTATGCCTCTCCGATCGGCTCAGTGC-CCACTCGCTTGTTTCATGGGTTGACTTAGGCA
65 TGCGCATTATGCCTCTACGACCAACTCAGCGCTCCA-T-GCCCGTTTCATGGGTTGACTTAGGCA
* ***
16519840 TACGAAGTTCATTCCCA-GTCTAAG-ATTAG
128 TACGAAGTTCATT-CCATGTCTAGGCCCCAG
* * * ** * * * * * * * **
16519869 ACCAGACCGAGGGTTACGGGAACAAGATTGACAGCACGCA-GGGGGATCGAGCCGATCCCCCGCT
1 -TCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTAGCT
* * * *** * * * * *
16519933 TGCACATTCTGCCTCTCCGACCGGTTGAGCGCTCGCACGCTCTTTTCATGGGTTGGCTTAGGCAT
65 TGCGCATTATGCCTCTACGACCAACTCAGCGCTC-CATGCCCGTTTCATGGGTTGACTTAGGCAT
16519998 AC-AGAGTTCATTCCATGTCTA
129 ACGA-AGTTCATTCCATGTCTA
16520019 AGCATACAGA
Statistics
Matches: 245, Mismatches: 54, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.02
157 85 0.35
158 40 0.16
159 113 0.46
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
TCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTAGCTT
GCGCATTATGCCTCTACGACCAACTCAGCGCTCCATGCCCGTTTCATGGGTTGACTTAGGCATAC
GAAGTTCATTCCATGTCTAGGCCCCAG
Found at i:16520024 original size:26 final size:26
Alignment explanation
Indices: 16519994--16520046 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16519984 GTTGGCTTAG
16519994 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
16520020 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
16520046 G
1 G
16520047 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:16527840 original size:158 final size:158
Alignment explanation
Indices: 16527269--16527840 Score: 514
Period size: 159 Copynumber: 3.6 Consensus size: 158
16527259 CACCCGTTCG
* * * ** * *
16527269 ATCCCCGACTTGCGCATCCTGCCTCT-CTATTCGG-TGAGTGCCCGCACGCTCGTTTCATAGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGA--CGGCTGAGCACCCGCACGCTCATTTCATGGGTT
* * * * * *
16527332 AACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGGACCAGACCGAGGGTTGCGGCAACAG
64 GACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAG
16527396 GATCGACAGCACA-CAGG-GGGGACTGGGCCA
128 GATCGACAGCA-AGCAGGAGGGGACTGGGCCA
* * * * * *
16527426 ATCCCCGACTGGCGCATTCTACCTCTCCGGCTGGCTGAGCACCCGCACGCCCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGAC-GGCTGAGCACCCGCACGCTCATTTCATGGGTTG
* * * ** * *
16527491 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGG
65 ACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAGG
** * * **
16527555 A-CAGGTAGCATGCA-GAGGTGGACCGGGCTG
129 ATC-GACAGCAAGCAGGAGG-GGACTGGGCCA
* * * ** * *
16527585 ATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGTGCCTGCACGCACATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCC-GACGGCTGAGCACCCGCACGCTCATTTCATGGGTTG
* * * *
16527650 ACTTAGGCATACGGAGTTCATTCC-TACTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAAG
65 ACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGG
* *
16527714 ATCGACAGCAAGCAGGATGGGAATGGGCCA
129 ATCGACAGCAAGCAGGAGGGGACTGGGCCA
* * * * ** * *
16527744 ATCCCTGGCTTGTGTATTCTGCCTCTCCGACAGCTGAGCACCCGCACGCTTGTTTCGTGGGTTGG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCACCCGCACGCTCATTTCATGGGTTGA
16527809 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
16527841 CATACGGAGT
Statistics
Matches: 324, Mismatches: 76, Indels: 29
0.76 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 31 0.10
158 136 0.42
159 148 0.46
160 8 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCACCCGCACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGAT
CGACAGCAAGCAGGAGGGGACTGGGCCA
Found at i:16527850 original size:26 final size:26
Alignment explanation
Indices: 16527814--16527866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16527804 GTTGGCTTAG
16527814 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16527840 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16527866 G
1 G
16527867 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16528547 original size:157 final size:159
Alignment explanation
Indices: 16528276--16528721 Score: 438
Period size: 157 Copynumber: 2.8 Consensus size: 159
16528266 TCCGGTAGCA
* * * * * * *
16528276 GGATCGACAGCACGTAGGGGGGATCGGGCCGGTCCCTGACTTGCGCATTCTGCCTCTTCGGCCGG
1 GGATCGACAGCACGTAGGAGGGATCGGACCGATCCCTAACTTACGCATTCTGCCTCTCCGACCGG
* * *
16528341 CTGAGCACCCGCACACCGGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-
66 CTAAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* **
16528405 CCCCAGCTGGA-TCGAGGGTTGTGGCAGCG
131 CCCCAACCAGACT-GAGGGTTGTGGCAGCG
*
16528434 GGATCGACAGCACGTAGGAGGGATC-GACCGAT-CCTCAACTTACGCATTCTGCCTCTCCGACTG
1 GGATCGACAGCACGTAGGAGGGATCGGACCGATCCCT-AACTTACGCATTCTGCCTCTCCGACCG
* * * *
16528497 GATTAAG-GCCGGCACACCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 G-CTAAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
16528561 GCCCCCAACCAGACTGAGGGTTGTGGCAGCG
129 GCCCCCAACCAGACTGAGGGTTGTGGCAGCG
* * * * ** ** * * * *
16528592 GGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTAAGCATTATGCCTCTTCGGCCG
1 GGATCGACAGCACGTAG-GAGGGATCGGACCGATCCCTAACTTACGCATTCTGCCTCTCCGACCG
* * * * * * * * *
16528657 GCTCAA-CGCTCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TGGTCTA
65 GCT-AAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTA
16528720 AG
128 AG
16528722 ATCAGATTGG
Statistics
Matches: 236, Mismatches: 42, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.01
157 81 0.34
158 66 0.28
159 9 0.04
160 74 0.31
161 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GGATCGACAGCACGTAGGAGGGATCGGACCGATCCCTAACTTACGCATTCTGCCTCTCCGACCGG
CTAAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCCAACCAGACTGAGGGTTGTGGCAGCG
Found at i:16529613 original size:26 final size:26
Alignment explanation
Indices: 16529577--16529627 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16529567 TGACTTAGGA
*
16529577 ATACGGAGTTCATCCCAAGTCTAAGC
1 ATACGAAGTTCATCCCAAGTCTAAGC
* *
16529603 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCAAGTCTAAG
16529628 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCAAGTCTAAGC
Found at i:16530132 original size:26 final size:26
Alignment explanation
Indices: 16530081--16530133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16530071 GTTGGCTTAG
* *
16530081 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGACTAA
16530107 GCATACGAAGTTCATTCCCA-GACTAA
1 GCATACGAAGTTCATT-CCATGACTAA
16530133 G
1 G
16530134 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGACTAA
Found at i:16530993 original size:157 final size:159
Alignment explanation
Indices: 16530612--16531001 Score: 380
Period size: 157 Copynumber: 2.5 Consensus size: 159
16530602 CCCGCATGTC
* * * * * * *
16530612 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAACCCCAGTCAGATCGGGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* ** * *
16530677 TTGTGGCAGCCGGACCAGTAGCACGTAGAAGGGGACCAGGTCGATCCTCGGCTTGCGCATTATAC
66 TTGCGGCAGCAAGACCAGTAGCACGCAGAAGGGGACCAGGTCGATCCTCGGCTTGCACATTATAC
* * *
16530742 CTCTTCGACGGGCTCAACGCTCGGACGCT
131 CTCTCCGACCGGCTCAACGCTCGCACGCT
* **** * *
16530771 CGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCC-TAGTCTAAG-AGTGGACTGGACTGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGACCGAG
* * * * * *
16530834 GGTTGCGGTAGCAAGATC-GATAGTAC-CAG-GGGGGACC-GGGCTGATCCTCGGTTTGCACATT
64 GGTTGCGGCAGCAAGACCAG-TAGCACGCAGAAGGGGACCAGGTC-GATCCTCGGCTTGCACATT
* * * **
16530895 TTGCCTCTCCGACCGGCTGAGGGC-CTGCACGCT
127 ATACCTCTCCGACCGGCTCAACGCTC-GCACGCT
16530928 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
*
16530993 TTGTGGCAG
66 TTGCGGCAG
16531002 TCAGACCGAA
Statistics
Matches: 182, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 108 0.59
158 7 0.04
159 63 0.35
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGCGGCAGCAAGACCAGTAGCACGCAGAAGGGGACCAGGTCGATCCTCGGCTTGCACATTATAC
CTCTCCGACCGGCTCAACGCTCGCACGCT
Found at i:16531268 original size:26 final size:26
Alignment explanation
Indices: 16531239--16531291 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16531229 GTTGGCTTAG
*
16531239 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
16531265 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
16531291 G
1 G
16531292 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:16532497 original size:159 final size:159
Alignment explanation
Indices: 16532303--16532691 Score: 435
Period size: 159 Copynumber: 2.4 Consensus size: 159
16532293 CTCTCCGGCA
* * *
16532303 GGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * * *
16532368 GCCCCA-ACCGGATTGAGGGTTGTGGCAGCGGGATCGGTAGCACACAGAGGGGGATCGGGTCGAT
66 GCACCAGACCGGATTGAGGGTTGCAGCAGCAGGATCGATAGCACACAG-GGGGGATCGGGCCGAT
* * **
16532432 CCCCGGCTTGCGTATTATGCCTGTGT-GTTC
130 CCCCAGCTTGCGTATTATACCT-TGTCGACC
* * *
16532462 GGCTCAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTA
1 GGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* ** * ** *
16532526 AG-ATCAGATTGGATTGAGGGTTGCAGCAGCAGGATTGATAGCACGTAGGGGGGATCTGGCCGAT
65 AGCACCAGACCGGATTGAGGGTTGCAGCAGCAGGATCGATAGCACACAGGGGGGATCGGGCCGAT
* *
16532590 CCCCAGCTTGCGTATTCTACCTTTTCGACC
130 CCCCAGCTTGCGTATTATACCTTGTCGACC
* * *
16532620 GGCTGAGCGCTCGCACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGT
1 GGCTGA--GCAC-C-CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
16532685 CTAAGCA
62 CTAAGCA
16532692 TACGGAGTTC
Statistics
Matches: 190, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
157 2 0.01
158 42 0.22
159 88 0.46
160 6 0.03
161 4 0.02
162 47 0.25
163 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (159 bp):
GGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGACCGGATTGAGGGTTGCAGCAGCAGGATCGATAGCACACAGGGGGGATCGGGCCGATC
CCCAGCTTGCGTATTATACCTTGTCGACC
Found at i:16532714 original size:26 final size:26
Alignment explanation
Indices: 16532663--16532715 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16532653 GTTGGCTTAG
* *
16532663 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
16532689 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
16532715 G
1 G
16532716 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16532986 original size:171 final size:170
Alignment explanation
Indices: 16532744--16533057 Score: 393
Period size: 171 Copynumber: 1.8 Consensus size: 170
16532734 TTGCGATAGT
* * * *
16532744 AGGACCAGCAACAGGATCGACAGCATGCAGGGGGAGATCGGGCCTATCCCCGGCTTGCACATTCT
1 AGGACCAGCAACAGGATCGACAGCACGCAGGGGGAGACCGAGCCTATCCACGGCTTGCACATTCT
* * *
16532809 GCCTCTCCGACCGACTGAGCACTCGTACGTTCCTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
66 GCCTCTCCGACCGACTGAGCACTCGCACGCTCCTTTCGTGGGTTGACTT-GGCATACAGAGTTCA
16532874 TTCCAT-GTCTAAGCTCCAGCCAGACTGAGGGTTGTGGCAGC
130 -TCCATAGTCTAAGCTCCAGCCAGACTGAGGGTTGTGGCAGC
* * *
16532915 AGGACCGGCAACGGGATCGACAGCACGCAGAGGGG-GACCGAG-CTGATCCACGGCTTGCGCATT
1 AGGACCAGCAACAGGATCGACAGCACGCAG-GGGGAGACCGAGCCT-ATCCACGGCTTGCACATT
* * ** * * *
16532978 AC-GCCTCTCCGGCTGACTGAGCGGTCGCACGCTCGTTTTGTGGGTTGACTTGGCATACGGAGTT
64 -CTGCCTCTCCGACCGACTGAGCACTCGCACGCTCCTTTCGTGGGTTGACTTGGCATACAGAGTT
*
16533042 CATCCCTAGTCTAAGC
128 CATCCATAGTCTAAGC
16533058 ATACGGAGTT
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
169 4 0.03
170 24 0.20
171 88 0.73
172 5 0.04
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (170 bp):
AGGACCAGCAACAGGATCGACAGCACGCAGGGGGAGACCGAGCCTATCCACGGCTTGCACATTCT
GCCTCTCCGACCGACTGAGCACTCGCACGCTCCTTTCGTGGGTTGACTTGGCATACAGAGTTCAT
CCATAGTCTAAGCTCCAGCCAGACTGAGGGTTGTGGCAGC
Found at i:16533066 original size:26 final size:26
Alignment explanation
Indices: 16533030--16533082 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16533020 GGTTGACTTG
16533030 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16533056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16533082 G
1 G
16533083 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16533987 original size:26 final size:26
Alignment explanation
Indices: 16533957--16534007 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16533947 TTGACTTAGG
16533957 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
16533983 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
16534008 GATCGAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:16534787 original size:26 final size:26
Alignment explanation
Indices: 16534758--16534810 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16534748 GTTGGCTTAG
* *
16534758 GCATACGGACTTCATTCCAT-GTCTAA
1 GCATACAGAATTCATTCC-TCGTCTAA
16534784 GCATACAGAATTCATTCCTCGTCTAA
1 GCATACAGAATTCATTCCTCGTCTAA
16534810 G
1 G
16534811 ATCGTTCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCTCGTCTAA
Found at i:16535160 original size:26 final size:26
Alignment explanation
Indices: 16535131--16535181 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16535121 GTTGACTTAG
16535131 GCATACAGAGGTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
* *
16535157 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGGTCATCCCCAGTCTA
16535182 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:16535450 original size:158 final size:159
Alignment explanation
Indices: 16535193--16535682 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 159
16535183 GATCGGATCG
* *
16535193 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC--AGGGGGACCGGGTCGATCCCCGACTTGC
1 GACCGAGGGTTGTGGCAACAAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGC
** * * *
16535256 GCATTCTGCCTCTCCGACCGGTTGAGCGCCCACACGCCCGTTTCGT-TGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
*
16535320 GAGTTCATTCCCTGTCTAAGCCCCAACCG
131 GAGTTCATTCCCTGTCTAAGCCCCAACCA
* *** * * *
16535349 GACCGAGTGTTGTGGCAATGGGA-CTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCATG
1 GACCGAGGGTTGTGGCAACAAGATC-GACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTG
* * * * * * * *
16535413 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTATGCATAC
65 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
* * ***
16535478 GAAGTTCATTCCCAGTCTAAG-GTTAGACCA
130 GGAGTTCATTCCCTGTCTAAGCCCCA-ACCA
* * ** * * * * **
16535508 AATCGAGGGTTCCGGCAACAAGATCGACACCACGCAG-GGGGGATCGGGCCAATCCCCGACTTAA
1 GACCGAGGGTTGTGGCAACAAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGC
* * *
16535572 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
* * *
16535637 GAGTTCATTCCATCTCTAAGCCCCAGCCA
131 GAGTTCATTCCCTGTCTAAGCCCCAACCA
16535666 GACCGAGGGTTGTGGCA
1 GACCGAGGGTTGTGGCA
16535683 GCGGGACCAC
Statistics
Matches: 261, Mismatches: 66, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
155 1 0.00
156 28 0.11
158 170 0.65
159 61 0.23
160 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAACAAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGC
GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCCTGTCTAAGCCCCAACCA
Found at i:16536361 original size:26 final size:26
Alignment explanation
Indices: 16536325--16536376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16536315 GTTGGCTTAG
*
16536325 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16536351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16536377 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16537063 original size:26 final size:26
Alignment explanation
Indices: 16537027--16537079 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16537017 GTTGGCTTAG
16537027 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
16537053 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
16537079 G
1 G
16537080 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:16537982 original size:26 final size:26
Alignment explanation
Indices: 16537946--16537996 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16537936 GTTGACTTAG
16537946 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16537972 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16537997 TGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16538214 original size:184 final size:184
Alignment explanation
Indices: 16537874--16538341 Score: 557
Period size: 184 Copynumber: 2.5 Consensus size: 184
16537864 CCACTCGTTC
* * * * *
16537874 GATCCCCGGCTTGCGCATCCTGCCT-TTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
1 GATCCCCGGCTTACGCATTCTGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
** *
16537938 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCG
* ** * * * *
16538003 AACCGGACTGAGGGTCACGGTAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCA
130 AACCGAACTGAGGGTCACGACAGCAGGATCGACAGCACGCAGGAGGGACCGAG-CA
* * * * *
16538059 G-TCCCCGGCTTATGCATTTTGCCTCTTCGGCCGGCTGAGTGCCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
16538123 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATACAAAGTTTATTCCCAGTCTAAGATC-A
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA
*** * *
16538187 GACCGAA-TCGAGGGTTGTGACAGCAGGATCGACAGCATGCAGGAGGGACCGAGCT
131 -ACCGAACT-GAGGGTCACGACAGCAGGATCGACAGCACGCAGGAGGGACCGAGCA
* * * *
16538242 GATCCTCGGCTTACGCATTCTGCCTCTTTGGCCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
16538307 GGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGC
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
16538342 CCTAGCCGGA
Statistics
Matches: 238, Mismatches: 41, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
183 4 0.02
184 230 0.97
185 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
GATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA
ACCGAACTGAGGGTCACGACAGCAGGATCGACAGCACGCAGGAGGGACCGAGCA
Found at i:16538457 original size:159 final size:158
Alignment explanation
Indices: 16538196--16538499 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 158
16538186 AGACCGAATC
* * * * *
16538196 GAGGGTTGTGACAGCAGGATCGACAGCATGCAGGAGGGACCGAGCTGATCCTCGGCTTACGCATT
1 GAGGGTTGTGACAGCAGGACCGACAGCACGCAGGAGGGACCGAGCTGATCCCCGACTTACACATT
* * * * *
16538261 CTGCCTCTTTGGCCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGT
66 ATGCCTCTTTGGCAGGCTCAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACA-GAGT
16538325 TCATTCCAAGTCTAAGCCCTAGCCGGATT
130 TCATTCCAAGTCTAAGCCCTAGCCGGATT
* * * * * *
16538354 GAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCACAT
1 GAGGGTTGTGACAGCAGGACCGACAGCACGCAG-GAGGGACCGAGCTGATCCCCGACTTACACAT
* * * *
16538419 TATGCCTCTTTGGCAGTCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGT
65 TATGCCTCTTTGGCAGGCTCAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACAGAGT
*
16538484 TCATTCCCAGTCTAAG
130 TCATTCCAAGTCTAAG
16538500 ATCAGATCAG
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 28 0.23
159 94 0.76
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGACAGCAGGACCGACAGCACGCAGGAGGGACCGAGCTGATCCCCGACTTACACATT
ATGCCTCTTTGGCAGGCTCAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
CATTCCAAGTCTAAGCCCTAGCCGGATT
Found at i:16538537 original size:159 final size:156
Alignment explanation
Indices: 16538158--16538540 Score: 372
Period size: 159 Copynumber: 2.4 Consensus size: 156
16538148 CAGTCTAAGG
* * * **
16538158 ATACAAAGTTTATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGACAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACAG-ATCGAGGGTTCAG-CAGCAGGATCGACAGC
* * * * * * * *
16538223 ATGCAGGAGGGACCGAGCTGATCCTCGGCTTACGCATTCTGCCTCTTTGGCCGGCTGAGCGCCCG
64 ACGCAGGAGGGACCGAGCTGATCCCCGACTTACACATTATGCCTCTTTGGCAGGCTCAGCACCCG
*
16538288 CACACCCGTTTCGTGGGTTGGCTTAGGC
129 CACACCCGTTTCGTGGGTTGACTTAGGC
* ** * * * ** * *
16538316 ATA-AGGAGTTCATTCCAAGTCTAAGCCCTAGCCGGATTGAGGGTTGTGGCAGCGGGACCGACAG
1 ATACA-GAGTTCATTCCCAGTCTAAGATC-AGACAGATCGAGGGTT-CAGCAGCAGGATCGACAG
* * * * *
16538380 CACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTTTGGCAGTCTCAGCACC
63 CACGCAG-GAGGGACCGAGCTGATCCCCGACTTACACATTATGCCTCTTTGGCAGGCTCAGCACC
* * *
16538445 CGCACGCTCGTTTCGTGGGTTGACTTATGC
127 CGCACACCCGTTTCGTGGGTTGACTTAGGC
* * *
16538475 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACAGCAGTAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGATCGAGGGTT-CAGCAGCAGGATCGACAGC
16538540 A
64 A
16538541 TGAAGGGGGG
Statistics
Matches: 176, Mismatches: 43, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
157 1 0.01
158 50 0.28
159 124 0.70
160 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (156 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGACAGATCGAGGGTTCAGCAGCAGGATCGACAGCAC
GCAGGAGGGACCGAGCTGATCCCCGACTTACACATTATGCCTCTTTGGCAGGCTCAGCACCCGCA
CACCCGTTTCGTGGGTTGACTTAGGC
Found at i:16539462 original size:26 final size:26
Alignment explanation
Indices: 16539433--16539485 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16539423 GTTGGCTTAG
16539433 GCATACTG-AGTTCAAT-CCATGTCTAA
1 GCATAC-GAAGTTCAATCCCA-GTCTAA
*
16539459 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
16539485 G
1 G
16539486 ATCAAAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:16541295 original size:158 final size:157
Alignment explanation
Indices: 16541110--16541538 Score: 463
Period size: 158 Copynumber: 2.7 Consensus size: 157
16541100 GATAGGACAC
* * *
16541110 AGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCATCGGCCGACTGAGCGCCCGCACA
1 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCGACCGACTGAGCGCCCGCACG
* * * *
16541175 CCCAG-TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAG-CCAGACT-
65 CTC-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG-ACCAGACC-GAATC
** *
16541237 GAGGGTTGTGGTAGCAGGACCGACAGCACGG
127 GAGGGTTGCAGTAGCAGGACCGACAACACGG
* * * * * *
16541268 AGGGGGGACCGGGCCGATCCCCGGCTTGC-CTATTATGCCTCTCCGATCGGCTCAGCGCCCGTAC
1 AGGGGGGACCGGGTCGATCCCCGGCTTGCGC-ATTCTGCCTCT-CGACCGACTGAGCGCCCGCAC
* * * * *
16541332 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCA-GTCTAAGATCGGACCGAATCGA
64 GCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCAGACCGAATCGA
*
16541396 GGGTTGCAGTAGCAGGACCGACAACACGT
129 GGGTTGCAGTAGCAGGACCGACAACACGG
* * * ** *
16541425 AGTGGGGAATCGGGTCGGTCCCCGGCTTATGCATTCTGCCTCTTCGACCGACTGAGCACCCGCAC
1 AG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCGACCGACTGAGCGCCCGCAC
* * * *
16541490 GCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTCCATACCATGTCTAA
64 GCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
16541539 TCATTCAGAG
Statistics
Matches: 222, Mismatches: 40, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
156 5 0.02
157 41 0.18
158 168 0.76
159 8 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCGACCGACTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCAGACCGAATCGAGG
GTTGCAGTAGCAGGACCGACAACACGG
Found at i:16541751 original size:26 final size:26
Alignment explanation
Indices: 16541721--16541774 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16541711 GGTTGACTCT
*
16541721 AGCATACGGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
*
16541747 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
16541773 AG
1 AG
16541775 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:16542092 original size:26 final size:26
Alignment explanation
Indices: 16542062--16542114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16542052 GTTGGCTTAG
*
16542062 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16542088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16542114 G
1 G
16542115 ATGGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16542301 original size:26 final size:26
Alignment explanation
Indices: 16542272--16542324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16542262 GTTAACTTAG
*
16542272 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
16542298 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16542324 G
1 G
16542325 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16542448 original size:549 final size:548
Alignment explanation
Indices: 16541428--16542661 Score: 1396
Period size: 549 Copynumber: 2.2 Consensus size: 548
16541418 AACACGTAGT
* * * * *
16541428 GGGGAATCGGGTCGGTCCCCGGCTTATGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCT
1 GGGGGATCCGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCT
* * * * * * *
16541493 CGTTTCATGGGTTAGCTTAGGCATACGGAGTCCATACCATGTCTAATCATTCAGAGTTCATTCCG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
16541558 AGTCTAAGAATGGACCAGACTGAGGGTTACGACAGCAGGACCAGTAGCAGGATCAACAGCACACA
131 AGTCTAAGAATGGACCAGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCAACAGAACACA
* * * ** * * *
16541623 GGGGGGATCGGGTTGATCCTCGGGTTACGCATTCTACCTCTTCGGCCGGCCTCTCCAGTCGACTA
196 GGGGGGACCAGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGCCGGCCTCTCCAGCCAACTA
* * * *
16541688 AGCGCCCGTACGCTCATTTCATGGGTTGACTCTAGCATACGGAGTTCATCCCCAGTCTAAGCATA
261 AGCGCCCGCACGCTCATTTCACGGGTTAACTCTAGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * * * * * **
16541753 CAGAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTTGCGACAGTAGGATCTAGCATGCA
326 CAAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCAGGATCCAGCACACA
* * ** * * * *
16541818 GGGGGGACTGGGCTAATCCCCAGCCTGCGCATTCTGCCTCTCTGGATGACTGAGCGCCTACACGC
391 GGGGAGACCGAACCAATCCCCAGCCTGCGCATTCTGCCTCTCTGGATGACTAAACGCCCACACGC
* * * * *
16541883 CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAATTAGACCGAGA
456 CCGTTTCA--GGTTGGCTTAGGCATAGGGAATTAATTCAATGTCTAAGCCCCAACTAAACCGAGA
* * *
16541948 GTTGTGGTAGTGGGACTGGTTGCACACAGA
519 GTTGTGGCAGTGGGACCGGTAGCACACAGA
* * *
16541978 GGGGGA-CCGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCACACGCT
1 GGGGGATCCGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCT
*
16542042 CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* ** ** *
16542107 AGTCTAAG-ATGGGA-TAGGACCGAGGGTTGGGGTAGCAGGACCAGCAGCAGGATCAGCAGAATG
131 AGTCTAAGAAT-GGACCA-GACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCAACAGAA--
* * *
16542170 CA-AGGGGGGACCAGGTCGATCC-CTGACTTGCGCATTCTGCCTCTCCGGTCGGCCTCT-CAGGC
192 CACAGGGGGGACCAGGTCGATCCTC-GACTTACGCATTCTACCTCTCCGGCCGGCCTCTCCA-GC
* * * * * * *
16542232 CAACTGAGTGCCTGCATGCTCGTTTCGCGGGTTAACT-TAGGCATACAGAGTTCATCCCTAGTCT
255 CAACTAAGCGCCCGCACGCTCATTTCACGGGTTAACTCTA-GCATACAGAGTTCATCCCCAGTCT
**
16542296 AAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCA-AACCGAGGGTTACGGTAGCAGGATCG
319 AAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGAA-CGAGGGTTACGACAGCAGGATC-
* * * **
16542360 ACAGCACACAGGGGAGACCGAACCGATCCCCAGCTTGTGCATTCTGCCTCT-TCGG-TCGGTTAA
382 -CAGCACACAGGGGAGACCGAACCAATCCCCAGCCTGCGCATTCTGCCTCTCT-GGAT-GACTAA
* * *
16542423 ATGCCCGCACGCCCGTTTC-GGTTGGCTTAGGCATAGGGAATTAATTCCATGTCTAAGCCCCAAC
444 ACGCCCACACGCCCGTTTCAGGTTGGCTTAGGCATAGGGAATTAATTCAATGTCTAAGCCCCAAC
* **
16542487 TAAACCGAGGGTTGTGGCAGTGGGACCGGTAGCATGCAGA
509 TAAACCGAGAGTTGTGGCAGTGGGACCGGTAGCACACAGA
* * * * * * * *
16542527 GGGGGATCGGGTTGATCCCCAGCTTACGCATTCTGCATCTTTGGCCGGCTGAGCTCCCGGACGCT
1 GGGGGATCCGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCT
* * *
16542592 CATTTC-TTGG-TGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCC
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
16542655 AGTCTAA
131 AGTCTAA
16542662 TATTTTGAGC
Statistics
Matches: 573, Mismatches: 98, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
548 61 0.11
549 245 0.43
550 205 0.36
551 4 0.01
552 58 0.10
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (548 bp):
GGGGGATCCGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGAATGGACCAGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCAACAGAACACA
GGGGGGACCAGGTCGATCCTCGACTTACGCATTCTACCTCTCCGGCCGGCCTCTCCAGCCAACTA
AGCGCCCGCACGCTCATTTCACGGGTTAACTCTAGCATACAGAGTTCATCCCCAGTCTAAGCATA
CAAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCAGGATCCAGCACACA
GGGGAGACCGAACCAATCCCCAGCCTGCGCATTCTGCCTCTCTGGATGACTAAACGCCCACACGC
CCGTTTCAGGTTGGCTTAGGCATAGGGAATTAATTCAATGTCTAAGCCCCAACTAAACCGAGAGT
TGTGGCAGTGGGACCGGTAGCACACAGA
Found at i:16543552 original size:26 final size:26
Alignment explanation
Indices: 16543516--16543568 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16543506 GTTGGCTTAG
16543516 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
16543542 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16543568 G
1 G
16543569 AGTTCGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16544471 original size:26 final size:26
Alignment explanation
Indices: 16544435--16544487 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16544425 GTTGGCTTAG
16544435 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16544461 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16544487 G
1 G
16544488 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16544486 original size:184 final size:192
Alignment explanation
Indices: 16544177--16544686 Score: 572
Period size: 197 Copynumber: 2.7 Consensus size: 192
16544167 TACCACCCGT
* * ** * * * * **
16544177 TCGATCCCCGGCTTACGCATCCTGCCTCTTTGGTCGGCTGAGTGTCCGTACACTCATTTTGTGGG
1 TCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGTCCGCACACTCGTTTTGTACG
* * * *
16544242 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATT-TTGAGTCTAAGA
66 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCT-AGTCTAAGA
* * * *
16544305 TCGGATCGGA-C-TAAG-G-GTTGT-G-A-CAGCAGGATCGACAGCACGC-AGGGGGGACCGGG
129 TCGGATCGGACCAAAAGTGAGTAGTAGCAGCAGCAGGATCGACAGCACACAAGGGGGGACCGGA
* *
16544361 TCGATCCCCGACTTACGCATTCTGCCTATCCGGTCGACTGAGCGTCCGCACGCTCGTTTTGTACG
1 TCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGTCCGCACACTCGTTTTGTACG
16544426 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
* ** *
16544491 GGATCGGACCAAAAGTTGTAGTAGTAGGACCAGCAGCAGGATTGGTAGCACACAAGGGGGGATCG
131 GGATCGGACCAAAAG-TG-AGTAGTA-G--CAGCAGCAGGATCGACAGCACACAAGGGGGGACCG
16544556 GA
191 GA
* * * * * * *
16544558 TCGATCCTCGACTTGCGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACACTTGTTTCGTATG
1 TCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGTCCGCACACTCGTTTTGTACG
* * * *
16544623 TTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGAT
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
16544687 TTTGAGCGAC
Statistics
Matches: 274, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
183 3 0.01
184 116 0.42
185 2 0.01
186 3 0.01
188 1 0.00
190 4 0.01
192 1 0.00
195 1 0.00
196 16 0.06
197 127 0.46
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (192 bp):
TCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGTCCGCACACTCGTTTTGTACG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
GGATCGGACCAAAAGTGAGTAGTAGCAGCAGCAGGATCGACAGCACACAAGGGGGGACCGGA
Found at i:16549337 original size:26 final size:26
Alignment explanation
Indices: 16549288--16549340 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16549278 GTTGGCTTAG
* *
16549288 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
16549314 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
16549340 G
1 G
16549341 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16550513 original size:26 final size:26
Alignment explanation
Indices: 16550484--16550533 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16550474 GTTGGCTTAG
16550484 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATGTCTAA
*
16550510 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAATTCATTCCATGTCT
16550534 GAGATTAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATGTCTAA
Found at i:16550858 original size:171 final size:171
Alignment explanation
Indices: 16550550--16550879 Score: 369
Period size: 171 Copynumber: 1.9 Consensus size: 171
16550540 AGACCAGATT
* * *
16550550 GAGGGTTGTGGCAGCAGGACTAGCAGCAGGATTGGTAACACGCAGAGGGGGATCGGGTCGATCCC
1 GAGGGTTGTGGCAGCAGGACTAGCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTCGATCCC
* * * ** * ** * *
16550615 CGGCTTGCGCATTCTACCTTTTCGACAGGTTGAGCGCCCGGACGCTCATTTCGTGGGTTGGCTGA
66 CAGCTTGCGCATTATACCTCTTCGACAGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACTGA
* *
16550680 GGCATACGAAGTTCAT-TCCATGTCTAAGCCCCAGCCGAACC
131 AGCATACGAAGTTCATCCCCA-GTCTAAGCCCCAGCCGAACC
* * *
16550721 GAGGGTTGTGGTAGCAGGACT-GACAGTAGGATCGGCAGCACGCAGAGGGGGACCGGG-CTGATC
1 GAGGGTTGTGGCAGCAGGACTAG-CAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTC-GATC
* * * ** * *
16550784 CTCAGCTTGCGCATTATGCCTCTTCGGCCTACTGAGTGCCCGCACGCTCGTTTAATGGGCTGACT
64 CCCAGCTTGCGCATTATACCTCTTCGACAGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACT
* *
16550849 TAAGCATACGGAGTTCATCCCCAGTCTAAGC
129 GAAGCATACGAAGTTCATCCCCAGTCTAAGC
16550880 ATACGAAGTT
Statistics
Matches: 129, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
170 2 0.02
171 124 0.96
172 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (171 bp):
GAGGGTTGTGGCAGCAGGACTAGCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGTCGATCCC
CAGCTTGCGCATTATACCTCTTCGACAGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACTGA
AGCATACGAAGTTCATCCCCAGTCTAAGCCCCAGCCGAACC
Found at i:16550889 original size:26 final size:26
Alignment explanation
Indices: 16550849--16550903 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16550839 TGGGCTGACT
*
16550849 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
**
16550875 TAAGCATACGAAGTTCATTTCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
16550901 TAA
1 TAA
16550904 CATCAGACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:16551062 original size:184 final size:185
Alignment explanation
Indices: 16550748--16551087 Score: 445
Period size: 184 Copynumber: 1.8 Consensus size: 185
16550738 GACTGACAGT
* * * * * *
16550748 AGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCAGCTTGCGCATTATGCCTCTTCGGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCAGCC
* *
16550813 TACTGAGTGCCCGCACGCTCGTTTAATGGGCTGACTTAAGCATACGGAGTTCATCCCCAGTCTAA
66 GACTGAGTGCCCGCACGCTCGTTTAATGGGCTGACTTAAGCATACGGACTTCATCCCCAGTCTAA
*
16550878 GCATAC-GAAGTTCATTTCCAGTCTAACATCAGACTGGATCGAGGTTTGCGGCAGC
131 GCATACAG-AGTTCATTCCCAGTCTAACATCAGACTGGATCGAGGTTTGCGGCAGC
* * *
16550933 AGGATCGGCAGCACGCAG-GGGGGATCGAGCTAATCCCCGGCTTACGCATTCTGCCTCTCCAGCC
1 AGGATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCAGCC
** ** * * * *
16550997 GGTTGAGTGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATACGGACTTCAT-TCCATGTCT
66 GACTGAGTGCCCGCACGCTC-GTTTAATGGGCTGACTTAAGCATACGGACTTCATCCCCA-GTCT
16551060 AAGCATACAGAGTTCATTCCCAGTCTAA
129 AAGCATACAGAGTTCATTCCCAGTCTAA
16551088 GAGTTTGAGC
Statistics
Matches: 132, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 109 0.83
185 19 0.14
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (185 bp):
AGGATCGGCAGCACGCAGAGGGGGACCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCAGCC
GACTGAGTGCCCGCACGCTCGTTTAATGGGCTGACTTAAGCATACGGACTTCATCCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAACATCAGACTGGATCGAGGTTTGCGGCAGC
Found at i:16551075 original size:26 final size:26
Alignment explanation
Indices: 16551036--16551088 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551026 GTTGGCTTAG
*
16551036 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
16551062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
16551088 G
1 G
16551089 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:16551565 original size:26 final size:26
Alignment explanation
Indices: 16551536--16551588 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551526 ATTGGCCTAG
16551536 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16551562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16551588 G
1 G
16551589 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16554462 original size:159 final size:157
Alignment explanation
Indices: 16554233--16554603 Score: 345
Period size: 158 Copynumber: 2.3 Consensus size: 157
16554223 GAGTGCCTGC
* * * * * *
16554233 ACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATA-TCTAAGCCCCAGTCGGAC
1 ACGCTCATTTCGTGGGTGA-CTTAGGCATACGGAGTTCATTCC-TAGTCTAAGCACCAGCCAGAC
* * * ** * * * * *
16554297 TAAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACC-GAGCTGATCCCCGGTTTGCGC
64 CAAGGGTTGCGGCAGCAAGACCAACAACA-GCAGAGGGGGACCAG-GCCGATCCCCAGCTTGCGC
* ***
16554361 ATTATGCCTCTCCGGTCGGCTCAGCACCCGA
127 ATTACGCCTCTCCAACCGGCTCAGCACCCGA
*
16554392 ACGCTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCAGAC
1 ACGCTCATTTCGTGGGT-GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCACCAG-CCAGAC
* * * *
16554456 CGAGGGTTGCGGCAGCAAGATCAACAACAGCAGGGGGGGATCAGGCCGATCCCCAGCTTGCGCAT
64 CAAGGGTTGCGGCAGCAAGACCAACAACAGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCAT
* * * **
16554521 TCCGCCTCTCCAACCGGTTGAGCACCCTC
129 TACGCCTCTCCAACCGGCTCAGCACCCGA
* * *
16554550 ACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTGATTCC-ATGTCTAAGCA
1 ACGCTCATTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGCA
16554604 TACGGAGTTC
Statistics
Matches: 172, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 99 0.58
159 71 0.41
160 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
ACGCTCATTTCGTGGGTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCACCAGCCAGACCA
AGGGTTGCGGCAGCAAGACCAACAACAGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTA
CGCCTCTCCAACCGGCTCAGCACCCGA
Found at i:16556490 original size:159 final size:159
Alignment explanation
Indices: 16556029--16556491 Score: 461
Period size: 159 Copynumber: 2.9 Consensus size: 159
16556019 AGACTGGACC
* * *
16556029 GAGGGTTGTGGCAGCAGGATC-AGCAGCACGCAGGGGGGACTGGG-CTGATCCCCGGATTGCGCA
1 GAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAGCGGGGACCGGGCCTGATCCCCGGCTTGCGCA
* * * * * * *
16556092 TTATGCCTCTCCGGCCGACTGAGCACCCACACGCCCGTTTCATGTGTTGGCTAAGGCATAGGGAG
65 TTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
* *
16556157 TTCATTTCATGTCTAAGCCCCAGCCAAACT
130 TTCATTCCATGTCTAAGCCCCAGCCAAACA
* * * * * * * *
16556187 GAGGGCTGTGGCAGCGGGATCGACAGGACGTAGACGGGGACCAGGCC-GATTCTCGACTTGCGCA
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-CGGGGACCGGGCCTGATCCCCGGCTTGCGCA
* * * * * * *
16556251 TTATGCCTCTCCGGTCGGCTTAACGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAG
65 TTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
* **** * *
16556316 TTCATTCCCA-ATCTAAG-ATTGGATCAGACA
130 TTCATT-CCATGTCTAAGCCCCAG-CCAAACA
* * * *
16556346 GATGGTTGCGGTAGCAGGATCGACAGCACGCAGCCGGGGACCGGGCCTG-TCCCCGGCTTGTGCA
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-CGGGGACCGGGCCTGATCCCCGGCTTGCGCA
* * * *
16556410 TTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGCCATACGGAG
65 TTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
16556475 TTCATTCCATGTCTAAG
130 TTCATTCCATGTCTAAG
16556492 GATACGGAGC
Statistics
Matches: 239, Mismatches: 59, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
158 31 0.13
159 204 0.85
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGCGGGGACCGGGCCTGATCCCCGGCTTGCGCAT
TATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAAACA
Found at i:16556859 original size:26 final size:26
Alignment explanation
Indices: 16556829--16556881 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16556819 GTTGACTTAG
*
16556829 GCATACATAGTTCATCCCCAGTCTAA
1 GCATACATAGCTCATCCCCAGTCTAA
* *
16556855 GCATACGTAGCTCATTCCCAGTCTAA
1 GCATACATAGCTCATCCCCAGTCTAA
16556881 G
1 G
16556882 ATAGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACATAGCTCATCCCCAGTCTAA
Found at i:16557217 original size:159 final size:157
Alignment explanation
Indices: 16556855--16557250 Score: 357
Period size: 159 Copynumber: 2.5 Consensus size: 157
16556845 CCCAGTCTAA
* * * *
16556855 GCATACGTAGCTCATTCCCAGTCTAAGAT-AGGACTGGACCAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GAC-GGACCAAGGGTTGCGGCAGCAGGACCGAC
* * * * * * * * * *
16556919 ATCACGCTGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTAAGCTC
64 AACACGCTGGGGGGACCGAGCCGATCACCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGCAC
* *
16556984 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGAACGCCCGTTTCATGGGTTGACTTAG
* * ** * * * * * **
16557013 GCATAGGGAGTTCATT-ACACGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCAAGGGTTGCGGCAGCAGGACCGAC
* *
16557077 AACACG-TAGAGGGGGACCGAGCTGATCACCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
64 AACACGCT-G-GGGGGACCGAGCCGATCACCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGC
* * **
16557141 ACCCGAACGCTCTTTTTGTGGGTTGACTTAG
127 ACCCGAACGCCCGTTTCATGGGTTGACTTAG
* * *
16557172 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAGGGTTGCGGCAGCAGGACCGACA
* * *
16557237 GCATGCAGGGGGGA
65 ACACGCTGGGGGGA
16557251 TCAGGTCGGT
Statistics
Matches: 182, Mismatches: 48, Indels: 16
0.74 0.20 0.07
Matches are distributed among these distances:
157 3 0.02
158 56 0.31
159 120 0.66
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCAAGGGTTGCGGCAGCAGGACCGACAA
CACGCTGGGGGGACCGAGCCGATCACCGACTTGCGCATTATGCCTCTCCGACCGGCTAAGCACCC
GAACGCCCGTTTCATGGGTTGACTTAG
Found at i:16557892 original size:158 final size:157
Alignment explanation
Indices: 16557569--16557908 Score: 369
Period size: 158 Copynumber: 2.2 Consensus size: 157
16557559 TAGTCTAAGG
* * * **
16557569 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTGGCGGCAGCAGGATTGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGGCAGCAGGATCAACAGC
* * * * * * * * *
16557634 ATGCAGGGGGGTCGAGCCAGTCCTCGTTTTGCACATTCTGCCTCTTCAGTCGGCTAAGCGCCCGC
66 ACGCAGGGGGGCCGAGCCAATCCTCGATTTACACATTCTACCTCTCCAGTCGACTAAGCGCCAGC
* *
16557699 ATGCTCGTTTCATGCTTTGAATTATGC
131 ATGCTCGTTTCATGCGTTGAATTAGGC
* ** * *
16557726 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGTAGCAGGATCAACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGGCAGCAGGATCAACAGC
* * * * *
16557791 ACG-TGGGTGGGACCGAGCCAATCCTCGATTTACGCATTCTACCTCTCCGGTCGACTGAGCGTCA
66 ACGCAGGG-GGG-CCGAGCCAATCCTCGATTTACACATTCTACCTCTCCAGTCGACTAAGCGCCA
* **
16557855 GCATGCTCGTTTCATGGGTTGGCTTAGGC
129 GCATGCTCGTTTCATGCGTTGAATTAGGC
*
16557884 ATATGGAGTTCATT-CCATGTCTAAG
1 ATACGGAGTTCATTCCCA-GTCTAAG
16557909 CATACAGAGT
Statistics
Matches: 150, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
156 3 0.02
157 63 0.42
158 84 0.56
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGGCAGCAGGATCAACAGC
ACGCAGGGGGGCCGAGCCAATCCTCGATTTACACATTCTACCTCTCCAGTCGACTAAGCGCCAGC
ATGCTCGTTTCATGCGTTGAATTAGGC
Found at i:16558484 original size:26 final size:26
Alignment explanation
Indices: 16558455--16558504 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16558445 GGCTTAGGCT
*
16558455 TACGAAGTTTATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
16558481 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16558505 ATCGGACTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:16558854 original size:159 final size:159
Alignment explanation
Indices: 16558691--16558981 Score: 392
Period size: 159 Copynumber: 1.8 Consensus size: 159
16558681 GTTGTGGCAA
* *
16558691 CAGGATCGACAGCACGCAGAGGGGGA-TCAGGCCGA-TCCCTGGCTTGCGCATTATGCCTCTCCG
1 CAGGATCGACAGCACGCAGAGAGGCACT-AGGCC-ATTCCCTGGCTTGCGCATTATGCCTCTCCG
*
16558754 GTCAGCTCAGCT-CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCA-G
64 GTCAGCTCAG-TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATG
16558817 TCTAAGATTGGATCGGATTGAGGGTTGCGGGAG
127 TCTAAGATTGGATCGGATTGAGGGTTGCGGGAG
* * * * *
16558850 CAGGATCGACAGCATGCAGTGAGGCACTGGGCCATTCCCTGGCTTGCGCATTCTGCCTTTCCGGT
1 CAGGATCGACAGCACGCAGAGAGGCACTAGGCCATTCCCTGGCTTGCGCATTATGCCTCTCCGGT
* * * * * *
16558915 CGGCTGAGTGGCCGTACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTA
66 CAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
16558980 AG
131 AG
16558982 CATATGGTGT
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
158 5 0.04
159 108 0.95
160 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (159 bp):
CAGGATCGACAGCACGCAGAGAGGCACTAGGCCATTCCCTGGCTTGCGCATTATGCCTCTCCGGT
CAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
AGATTGGATCGGATTGAGGGTTGCGGGAG
Done.