Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 111 of 138
Found at i:16559204 original size:26 final size:26
Alignment explanation
Indices: 16559151--16559217 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
16559141 GTTGAATTAG
*
16559151 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTACAA
* * *
16559177 GCATACAGAGTTCATCCCCTGTCCAA
1 GCATACGGAGTTCATCCCCAGTACAA
*
16559203 GCATATGGAGTTCAT
1 GCATACGGAGTTCAT
16559218 TGCCAGTGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTACAA
Found at i:16559931 original size:26 final size:26
Alignment explanation
Indices: 16559881--16559934 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16559871 TGGGTTGACT
*
16559881 TAGGCATACAGAGTTTATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
* *
16559907 TAGGCATACAGAGTTCATTCGCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
16559933 TA
1 TA
16559935 AGATCAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:16560414 original size:26 final size:26
Alignment explanation
Indices: 16560385--16560437 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16560375 GTTGGCTTAG
16560385 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
16560411 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16560437 G
1 G
16560438 ATAAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16560616 original size:196 final size:196
Alignment explanation
Indices: 16560282--16560802 Score: 611
Period size: 196 Copynumber: 2.7 Consensus size: 196
16560272 GTTGTGGTAG
* * * * * * *
16560282 CAGGATCGACAGCACACAGAGGGGATCGAGTCGAT-CCTCGACTTACGCATTCTGCCTCTCCAAC
1 CAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCT-GGCTTGCGCATTCTACCTCTCCAGC
* *
16560346 CGGCTAAGCGCCCGTACGCTCG-TTCGTTGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCT
65 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCT
* ** *
16560409 AAGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGATTGCGGTAGTAGGACCAG
129 AAGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGATTACGACAGCAGGACCAG
16560474 CAA
194 CAA
* *
16560477 CAGGATCGACAGCACGTAGGGGGGATCGACCCGATCCCTGGCTTGCAG-ATTCTACCTCTCCAGC
1 CAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGC-GCATTCTACCTCTCCAGC
* * * * *
16560541 CGGCTGAGCACCCGTATGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATATCTA
65 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
* * * *
16560606 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGACTAGC
130 AGCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGATTACGACAGCAGGACCAGC
*
16560671 AG
195 AA
* * * * ** * *
16560673 CAGGATCGGCAGCATGCATGGGGGAATCGGGCCGATCCCCAGCTTGCGTATTCTTCCTCT-CAGG
1 CAGGATCGACAGCACGCA-GGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCA-G
* * * * * *
16560737 TCGGCTGAACGCCCGTACGTTTGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 CCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
16560802 A
129 A
16560803 CGCCCCAATC
Statistics
Matches: 274, Mismatches: 45, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
195 68 0.25
196 116 0.42
197 90 0.33
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
CAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCAGCC
GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGATTACGACAGCAGGACCAGCA
A
Found at i:16560914 original size:171 final size:171
Alignment explanation
Indices: 16560646--16560963 Score: 370
Period size: 171 Copynumber: 1.9 Consensus size: 171
16560636 CAGATCAGAC
* * * *
16560646 CGAGGGTTACGACAGCAGGACTAGCAGCAGGATCGGCAGCATGCATGGGGGAATCGGGCCGATCC
1 CGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCATGGGGGAACCAGGCCGATCC
** * * * * * * * *
16560711 CCAGCTTGCGTATTCTTCCTCTCAGGTCGGCTGAACGCCCGTACGTTTGTTTCCTGGGTTGGCTT
66 CCAGCTTGCACATTATGCCTCTCAGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTT
16560776 AGGCATACGGAGTTCATTCCATGTCTACGCCCCAATCGGAT
131 AGGCATACGGAGTTCATTCCATGTCTACGCCCCAATCGGAT
** * * **
16560817 CGAGGGTTGTGACAGCAGGACCGGCAGCAGGATCGGCAGCACGCA-GAGGGGGACCAGGTTGATC
1 CGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCATG-GGGGAACCAGGCCGATC
* * * ** *
16560881 CCC-GACTTGCACATTATGCCTCTCCGATCGGCTGAGCTCTTGCACGCTCGTTTTATGGGTTGAC
65 CCCAG-CTTGCACATTATGCCTCTCAGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGAC
16560945 TTAGGCATACGGAGTTCAT
129 TTAGGCATACGGAGTTCAT
16560964 CCCCAGTCTA
Statistics
Matches: 119, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
170 2 0.02
171 117 0.98
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (171 bp):
CGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGCAGCACGCATGGGGGAACCAGGCCGATCC
CCAGCTTGCACATTATGCCTCTCAGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCATGTCTACGCCCCAATCGGAT
Found at i:16560985 original size:26 final size:26
Alignment explanation
Indices: 16560949--16561001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16560939 GTTGACTTAG
* *
16560949 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
*
16560975 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
16561001 G
1 G
16561002 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:16561318 original size:26 final size:26
Alignment explanation
Indices: 16561289--16561341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16561279 GTTGACTTAG
*
16561289 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16561315 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16561341 G
1 G
16561342 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16561814 original size:158 final size:159
Alignment explanation
Indices: 16561441--16561817 Score: 375
Period size: 158 Copynumber: 2.4 Consensus size: 159
16561431 GCCGGTTCGG
* * * * *
16561441 CACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
1 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAG
* * ** *
16561506 TCAGACCGATGGTTGTGCCAGTGGGACCGGTAGCATGCAGAGGGGGACTGGGCCGATCCCTGACT
66 TCAGACCGAAGGTTGTGCCAGTAGGACCGACAGCATGCAGAGGGGGACTGGGCCAATCCCTGACT
** * *
16561571 TTTACATTATGCCTCTTCGACCGGCTCAA
131 TACACATTATGCCTCTCCGACCAGCTCAA
* * * * * *
16561600 CACCTGCACGCTTGTTTCGTAGGTTGACCTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTA
1 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTA
* * * * * *
16561663 GATCGGACCGAAGGTTGTGGCAGTAGGATCGACAGCATGCAG-GGGGGACTGGGCTAATTCCTGG
65 G-TCAGACCGAAGGTTGTGCCAGTAGGACCGACAGCATGCAGAGGGGGACTGGGCCAATCCCTGA
* * * * *
16561727 CTTACGCATTCTGCCTCTCCGACTAGCTGAG
129 CTTACACATTATGCCTCTCCGACCAGCTCAA
* * * * *
16561758 CGCCCGTATC-CTCGTTTTGTGGGTGGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 CACCCGCA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16561818 CTATGAAGTT
Statistics
Matches: 172, Mismatches: 41, Indels: 10
0.77 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 86 0.50
159 80 0.47
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (159 bp):
CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAG
TCAGACCGAAGGTTGTGCCAGTAGGACCGACAGCATGCAGAGGGGGACTGGGCCAATCCCTGACT
TACACATTATGCCTCTCCGACCAGCTCAA
Found at i:16561829 original size:26 final size:26
Alignment explanation
Indices: 16561793--16561842 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16561783 GGCTTAGGCA
*
16561793 TATGGAGTTCATT-CCATGTCTAAGCC
1 TATGAAGTTCATTCCCA-GTCTAAGCC
16561819 TATGAAGTTCATTCCCAGTCTAAG
1 TATGAAGTTCATTCCCAGTCTAAG
16561843 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (26 bp):
TATGAAGTTCATTCCCAGTCTAAGCC
Found at i:16562208 original size:26 final size:26
Alignment explanation
Indices: 16562171--16562223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16562161 GTTGACTTAG
16562171 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16562197 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
16562223 G
1 G
16562224 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16562525 original size:159 final size:160
Alignment explanation
Indices: 16562335--16562701 Score: 413
Period size: 160 Copynumber: 2.3 Consensus size: 160
16562325 CCTGCACACC
* * *
16562335 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCGAGG
* * * **
16562399 GTTGTAGTAGCGGGATCGACAGCACACAGAGG-GGGACCGGGTCGA-TCCCTGGCTTGCACATTA
65 GTTATAGCAGCAGGATCGACAGCACACAGAGGAGGGACAAGGTCGATTCCC-GGCTTGCACATTA
*
16562462 TGCCTCTCCGACCAGCTCAGCTCCCAG-ACGCT
129 TGCCTCTCCGACCAGCTCAGCGCCC-GTACGCT
* ** *
16562494 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAGG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACCGAGG
* * * ** * * *
16562558 GTTATGGCAGCAGGATTGATAGCACATGGGGGAGGGACAAGGTCGATTCCCGGCTTGCGCATTCT
65 GTTATAGCAGCAGGATCGACAGCACACAGAGGAGGGACAAGGTCGATTCCCGGCTTGCACATTAT
* * *
16562623 GCCTCTTCGACCGGCTGAGCGCCCGTACGCT
130 GCCTCTCCGACCAGCTCAGCGCCCGTACGCT
* *
16562654 CGTTTCGTGGGTT-AGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 CGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16562702 ATATGGAGTT
Statistics
Matches: 173, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
158 3 0.02
159 77 0.45
160 88 0.51
161 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (160 bp):
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGGG
TTATAGCAGCAGGATCGACAGCACACAGAGGAGGGACAAGGTCGATTCCCGGCTTGCACATTATG
CCTCTCCGACCAGCTCAGCGCCCGTACGCT
Found at i:16562677 original size:160 final size:156
Alignment explanation
Indices: 16562233--16562700 Score: 449
Period size: 159 Copynumber: 2.9 Consensus size: 156
16562223 GATCGGATTG
*** * * *
16562233 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGATC-AGGTCGATCTCCAGCTTG
1 GACCGAGGGTTATAGCAGCAGGATCGACAGCACACAGAGGGGGA-CAAGGTCGATC-CCGGCTTG
* * * * * * * *
16562296 TGCATTCTGCCTCTTCGATCGGATGAGCACCTGCACACCCGTTTTATGGGTTGGCTTAGGCATAG
64 CGCATTCTGCCTCTTCGACCGGCTGAGCACCCG-ACGCTCGTTTCATGGGTT-GCTTAGGCATAC
*
16562361 GGAGTTCATTCCATGTCTAAGCCCTAGCCA
127 GGAGTTCATTCCATGTCTAAGACCTAGCCA
* * * **
16562391 GACCGAGGGTTGTAGTAGCGGGATCGACAGCACACAGAGGGGGACCGGGTCGATCCCTGGCTTGC
1 GACCGAGGGTTATAGCAGCAGGATCGACAGCACACAGAGGGGGACAAGGTCGATCCC-GGCTTGC
* * * * * * *
16562456 ACATTATGCCTCTCCGACCAGCTCAGCTCCCAGACGCTCGTTTCATGGGTTGACTTAGGCATACA
65 GCATTCTGCCTCTTCGACCGGCTGAGCACCC-GACGCTCGTTTCATGGGTTG-CTTAGGCATACG
*
16562521 GAGTTCATTCC-TAGTCTAAGATC-AGACCA
128 GAGTTCATTCCAT-GTCTAAGACCTAG-CCA
* * * * ** *
16562550 GACTGAGGGTTATGGCAGCAGGATTGATAGCACATGGGGGAGGGACAAGGTCGATTCCCGGCTTG
1 GACCGAGGGTTATAGCAGCAGGATCGACAGCACACAGAGG-GGGACAAGGTCGA-TCCCGGCTTG
* * *
16562615 CGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATAT
64 CGCATTCTGCCTCTTCGACCGGCTGAGCACCCG-ACGCTCGTTTCATGGGTT-GCTTAGGCATAC
16562680 GGAGTTCATTCCATGTCTAAG
127 GGAGTTCATTCCATGTCTAAG
16562701 CATATGGAGT
Statistics
Matches: 252, Mismatches: 46, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
158 39 0.15
159 118 0.47
160 89 0.35
161 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GACCGAGGGTTATAGCAGCAGGATCGACAGCACACAGAGGGGGACAAGGTCGATCCCGGCTTGCG
CATTCTGCCTCTTCGACCGGCTGAGCACCCGACGCTCGTTTCATGGGTTGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGACCTAGCCA
Found at i:16562726 original size:26 final size:26
Alignment explanation
Indices: 16562674--16562726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16562664 GTTAGCTTAG
*
16562674 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTATAA
16562700 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATATGGAGTTCATT-CCATGTATAA
16562726 G
1 G
16562727 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTATAA
Found at i:16563049 original size:26 final size:26
Alignment explanation
Indices: 16563019--16563071 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563009 GTTGACTTAG
* *
16563019 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16563045 GCATACAGAGTTCTTTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16563071 G
1 G
16563072 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16563577 original size:158 final size:158
Alignment explanation
Indices: 16563146--16563578 Score: 374
Period size: 158 Copynumber: 2.7 Consensus size: 158
16563136 CCTGCTTGTG
* * * * * * *
16563146 CATTCTGCCTCTTTGGTCGGTTGAGCGCCCGCATGCCCGTTTCACGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTC-TTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGG
* * * * * * * **
16563211 AGCTCTTTCCATGTCTAAGCCCCAA-CCGGACCGAGGGTTATGGCAGCGGGATCGGTAGCACGGA
65 AGTTCATTCCATGTCTAAG-CCTAAGCCGGACTGAGGGTTATGGTAGCAGGATCGATAGCACACA
* * *
16563275 GAGGGGGACTAGGTCGATCCCCGACTTGCA
129 GAGGGGGACCAGGTCAATCCCAGACTTGCA
* * * * * * * * *
16563305 CATTATGCCTCTTCGGCCTGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATGCAG
1 CATTCTGCCTCTT-GGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGG
* ** ** * *
16563370 AGTTCATTCCCA-GTCTAAG-ATCGGATTGGACTGATGGTTACGGTAGCAGGATCGATAGCACAC
65 AGTTCATT-CCATGTCTAAGCCTAAG-CCGGACTGAGGGTTATGGTAGCAGGATCGATAGCACAC
* *
16563433 AG-GGGGGACC-GGGCTAATCCTCAG-CTTGCT
128 AGAGGGGGACCAGGTC-AATCC-CAGACTTGCA
* * *
16563463 CATTCTGCCTCTCTGGCCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTACACATACGG
1 CATTCTGCCTCT-TGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGG
* *
16563528 AGTTCATTCCATGTCTAAGCCTAAGCCGGACTGAGGGCTATGGTGGCAGGA
65 AGTTCATTCCATGTCTAAGCCTAAGCCGGACTGAGGGTTATGGTAGCAGGA
16563579 CAAGCAGCGA
Statistics
Matches: 208, Mismatches: 57, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
157 6 0.03
158 104 0.50
159 95 0.46
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CATTCTGCCTCTTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGGA
GTTCATTCCATGTCTAAGCCTAAGCCGGACTGAGGGTTATGGTAGCAGGATCGATAGCACACAGA
GGGGGACCAGGTCAATCCCAGACTTGCA
Found at i:16563719 original size:26 final size:26
Alignment explanation
Indices: 16563690--16563740 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563680 GTTGACTTAG
16563690 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16563716 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16563741 TGATCTGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16564095 original size:26 final size:26
Alignment explanation
Indices: 16564059--16564108 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16564049 GACTTAGGCA
16564059 TACGAAGTTCATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGTCTAAGCG
* *
16564085 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
16564109 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCG
Found at i:16564783 original size:26 final size:26
Alignment explanation
Indices: 16564744--16564793 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16564734 GACTTAGGCA
*
16564744 TACGGAGTTAATTCTCAGTCTAAGCC
1 TACGGAGTTAATTCCCAGTCTAAGCC
* *
16564770 TACGGATTTCATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
16564794 ATCGGACCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCC
Found at i:16565075 original size:159 final size:160
Alignment explanation
Indices: 16564912--16565271 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 160
16564902 GTCCATTTCT
* * * * **
16564912 TGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAG
* ** * * *
16564976 CTGCGGGACCGACGGCACGCAGAGAG-GGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCTC
66 CAGCAAGACCGACAGCACGCAG-GAGTGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTC
* *
16565040 CGGCCAGCTCAGTGCCCGCACGCTCGTTTTA
130 CGGCCAACTCAGCGCCCGCACGCTCGTTTTA
** * * * *
16565071 TGGGTTAACTTAAGCATACGGAGTTCATTCCCA-GCCTAAG-ATCGGACCGGACCGAGGGTTGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCA
* * * * * * ** *
16565134 GCAGCAAGATCGATAGCACGTAGGGGTGGACCTGGCCGATCCCCGGCTTGTGCATTCTGCCTCTC
65 GCAGCAAGACCGACAGCACGCAGGAGTGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTC
* *
16565199 CGGCCAACTGAGCGCCCGCACGCTCGTTTTG
130 CGGCCAACTCAGCGCCCGCACGCTCGTTTTA
16565230 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16565272 TATGGAGTTC
Statistics
Matches: 161, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 7 0.04
159 150 0.93
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAG
CAGCAAGACCGACAGCACGCAGGAGTGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCC
GGCCAACTCAGCGCCCGCACGCTCGTTTTA
Found at i:16565218 original size:686 final size:682
Alignment explanation
Indices: 16563713--16565270 Score: 1830
Period size: 686 Copynumber: 2.3 Consensus size: 682
16563703 ATCCCCAGTC
* * * *
16563713 TAAGCATACGGAGTTCATTCCCAGTCTATGATCTGACCAGACCGAGGGTTGCAGCAGCAAGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCG
* * * *
16563778 ACAGCACACA-GGGGGACCGAGCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGTG
66 ATAGCACACAGGGGGGACCG-GCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGTG
* *
16563842 CCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTT-ATTCCATGTCTAAGCCCCAAC
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA-TTTCATTCCATGTCTAAGCCCCAAC
* * * * * * ** *
16563906 CGAATTGAGGGTTGTGGTAGTAGGACCGATAGTGGGATCAGCAGCACGTAGAGGGGGATCGGGCT
194 AGAACTGAGGATTGTGGTAGTAAGACAGACAACGGGATCAGCAGCACGTAGAGGGGGATCAGGCT
** * * * *
16563971 GATCCCCAGCTTACGCATTATGCCTCTTTGGCCAGCCTCTTCGGCCGGTTGAATGCTCACACGCT
259 GATCCCCAGCTTACGCATTATGCCTCTCCGACCAGCCTCTCCGGCCGGCTGAACGCTCACACGCT
* * * *
16564036 CGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTCCC
324 CATTTCGTGGGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCCTACGGAGTTCATTCCC
* ** * ** *
16564101 AGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGTAGCATGCTGGGGGGACCGGG
389 AGTCTAAGATCAGACCAAATCGAGGGTCGCGACAGCAGGATCGACAGCATGCAGGGGGGACCGGG
* * * * * * *
16564166 CTAACCCTGGCTTGCACATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTTGGT
454 CGAACCCCGGCTTGCACATTCTACCTCTCAGAGCGACTGAACGCCCGCACGCCCATTTCGTTGGT
*
16564231 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGG
519 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGG
* * * *
16564296 GACCGACAGCACGCAGAGGTGGATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGCTAG
584 GACCGACAGCACGCAGAGGTGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGCCAG
* * * * * *
16564361 TTCAACACTCGTACGTTCATTTTGTGGGTTGACT
649 CTCAACACCCGCACGCTCATTTTATGGGTTAACT
* * * * * *
16564395 TAGGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCAAGGGTTG-TGATAGCAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCAAGATC
* * *
16564459 GATAGCATACAGGAGGGGACCGGGTTGATCCTCGGCTTCCGTG--TTCTGCCTCTCTGGCCGACT
65 GATAGCACACAGG-GGGGACC-GG-CGATCCCCGGCTT--GTGCATTCTGCCTCTCTGGCCGACT
* * ** *
16564522 GTGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACATATTTCATTTCATGTCTAAGCCC
125 GAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCC
* * *
16564587 CAGTCAG-ACTGAGGATTGTGGTAGTAAGACAGGCAACGGGATC-GACAGCACGCT-TAGGGGGA
190 CA-ACAGAACTGAGGATTGTGGTAGTAAGACAGACAACGGGATCAG-CAGCACG-TAGAGGGGGA
* * * * *
16564649 TCAGGCTGATCCTCAGCTTATGGATTATGCCTCTCCGACCGGCCTCTCCGGTCGGCTGAACG-TC
252 TCAGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGACCAGCCTCTCCGGCCGGCTGAACGCTC
* * * * *
16564713 TGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCTCAGTCTAAGCCTACGGATT
317 -ACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCCTACGGAGT
* * ** *
16564778 TCATTCCCAGTCTAAGATCGGACCAAA-CTGAGGGTCGTGGTAGTAGGATCGACAGCATGCAGGG
381 TCATTCCCAGTCTAAGATCAGACCAAATC-GAGGGTCGCGACAGCAGGATCGACAGCATGCAGGG
** ** * * *
16564842 GGGATTGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCTAG-GCGACTGAACGCCCGCACGTCC
445 GGGACCGGG-CGAACCCCGGCTTGCACATTCTACCTCTC-AGAGCGACTGAACGCCCGCACGCCC
* * *
16564906 ATTTC-TTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
508 ATTTCGTT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
* *
16564970 TTGTGGCTGCGGGACCGACGGCACGCAGAGAG-GGATCGGGTCGATCCCC-AGCTTGCACATTAT
572 TTGTGGCAGCGGGACCGACAGCACGCAGAG-GTGGATCGGGTCGATCCCCGA-CTTGCACATTAT
*** *
16565033 GCCTCTCCGGCCAGCTCAGTGCCCGCACGCTCGTTTTATGGGTTAACT
635 GCCTCTCCGGCCAGCTCAACACCCGCACGCTCATTTTATGGGTTAACT
*
16565081 TAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCG
** * *
16565146 ATAGCACGTAGGGGTGGACCTGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAACTGAG
66 ATAGCACACAGGGG-GGACC-GG-CGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAG
* * * *
16565211 CGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 TGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGC
16565271 ATATGGAGTT
Statistics
Matches: 727, Mismatches: 127, Indels: 40
0.81 0.14 0.04
Matches are distributed among these distances:
681 1 0.00
682 61 0.08
683 1 0.00
684 18 0.02
685 295 0.41
686 346 0.48
687 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (682 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATCG
ATAGCACACAGGGGGGACCGGCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGTGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAACAG
AACTGAGGATTGTGGTAGTAAGACAGACAACGGGATCAGCAGCACGTAGAGGGGGATCAGGCTGA
TCCCCAGCTTACGCATTATGCCTCTCCGACCAGCCTCTCCGGCCGGCTGAACGCTCACACGCTCA
TTTCGTGGGTTGACTTAGGCATACGAAGTTAATCCCCAGTCTAAGCCTACGGAGTTCATTCCCAG
TCTAAGATCAGACCAAATCGAGGGTCGCGACAGCAGGATCGACAGCATGCAGGGGGGACCGGGCG
AACCCCGGCTTGCACATTCTACCTCTCAGAGCGACTGAACGCCCGCACGCCCATTTCGTTGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGA
CCGACAGCACGCAGAGGTGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGCCAGCT
CAACACCCGCACGCTCATTTTATGGGTTAACT
Found at i:16565279 original size:26 final size:26
Alignment explanation
Indices: 16565243--16565295 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16565233 GTTGGCTTAG
16565243 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
16565269 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
16565295 G
1 G
16565296 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:16566000 original size:26 final size:26
Alignment explanation
Indices: 16565964--16566016 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16565954 GTTGACTTAG
16565964 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
16565990 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16566016 G
1 G
16566017 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16566448 original size:26 final size:26
Alignment explanation
Indices: 16566418--16566470 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16566408 ATTGGCTTAG
16566418 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16566444 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16566470 G
1 G
16566471 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16567173 original size:26 final size:26
Alignment explanation
Indices: 16567137--16567189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16567127 GTTGACTCAG
16567137 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16567163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16567189 G
1 G
16567190 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16567348 original size:26 final size:26
Alignment explanation
Indices: 16567308--16567360 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16567298 GTTGGCTTAG
* *
16567308 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
16567334 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
16567360 G
1 G
16567361 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:16568059 original size:26 final size:26
Alignment explanation
Indices: 16568030--16568082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16568020 GTTGACTTAG
* *
16568030 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16568056 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16568082 G
1 G
16568083 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16568412 original size:159 final size:153
Alignment explanation
Indices: 16568056--16568545 Score: 357
Period size: 159 Copynumber: 3.1 Consensus size: 153
16568046 CCCAGTTTAA
* ** * *
16568056 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGATAGTAGGAGCACGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGACCACGC
* * * * *
16568121 AAGAGGGACCGGGCAGATCCCCCCGGCTTGTGCATTCTGGCTCTCCGGTCGGCTGAGCGCCCACA
66 AAGAGGGACCGGGCAGAT-CCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCCCACA
* *
16568186 CGGTCATTTCGTGGGTTGGCTTAG
130 CGCTCATTTCGTGGGTTGACTTAG
* * * * *
16568210 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCTAGCT-AGACCGAGGGTTGTGGCAGCT-GGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-C-AGATCGGATCGAGGGTTGTGACAG-TAGGACC
* * *
16568271 GACAGCACGTAGAGGGAGACCGGGTC-GAT-CCTCGGCTTGCGGATTATGCCTCTCCAGTTGGCT
62 -AC-GCA---AGA-GG-GACCGGG-CAGATCCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCT
* * *
16568334 CAGTGCCCGCACGCTCATTTCGTTGGTTGACTTAG
119 CAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
* * *
16568369 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG-TG-A-C-AG-TAG-GA
* * * ** ** * * * * *
16568434 GCACGCAGGGAGGGACTGGGCCTAT-CCCTAGCTTGCACATTCTGCCTCTCC-GACCGGCTGAAC
60 CCACGCA-AGAGGGACCGGGCAGATCCCCCGGCTTGCGCATTATGCCTCTCCAG-TCGGCTCAGC
* * *
16568497 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
123 GCCCACACGCTCATTTCGTGGGTTGACTTAG
*
16568528 GCATGCGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16568546 ATGTCCAAGC
Statistics
Matches: 262, Mismatches: 51, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
153 4 0.02
154 40 0.15
155 5 0.02
156 3 0.01
158 5 0.02
159 171 0.65
160 9 0.03
161 12 0.05
162 2 0.01
163 6 0.02
164 3 0.01
165 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGACCACGC
AAGAGGGACCGGGCAGATCCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCCCACAC
GCTCATTTCGTGGGTTGACTTAG
Found at i:16568936 original size:26 final size:26
Alignment explanation
Indices: 16568896--16568948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16568886 GTTGACTTAG
16568896 GCATACAGAGATCATCCCCAATCTAA
1 GCATACAGAGATCATCCCCAATCTAA
* * *
16568922 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAATCTAA
16568948 G
1 G
16568949 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAATCTAA
Found at i:16569854 original size:26 final size:26
Alignment explanation
Indices: 16569818--16569870 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569808 GTTGGCTTAG
16569818 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16569844 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16569870 G
1 G
16569871 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16570577 original size:26 final size:26
Alignment explanation
Indices: 16570541--16570593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16570531 GTTGACATAG
*
16570541 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16570567 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16570593 G
1 G
16570594 AGCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16571053 original size:26 final size:25
Alignment explanation
Indices: 16571023--16571073 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
16571013 GTTGGCTTAG
16571023 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCA-GTCTAA
** *
16571049 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACAAAGTTCATTCCAGTCTAA
16571074 CATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (25 bp):
GCATACAAAGTTCATTCCAGTCTAA
Found at i:16571421 original size:26 final size:26
Alignment explanation
Indices: 16571371--16571423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16571361 GTTGACTTAG
*
16571371 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
16571397 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
16571423 G
1 G
16571424 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:16572093 original size:26 final size:26
Alignment explanation
Indices: 16572057--16572109 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16572047 GTTGACTTAG
16572057 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16572083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16572109 G
1 G
16572110 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16572472 original size:685 final size:672
Alignment explanation
Indices: 16571137--16572585 Score: 1676
Period size: 685 Copynumber: 2.1 Consensus size: 672
16571127 CGATTCCCGA
* * *** *
16571137 CTTGTGCATTCTGCCTCTTCGGTCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
16571202 ATACGAAGTTCATTCCATGTCTAAGCCTCAGCCGAACCGAGGGTTGTGGCAGCAGGACTGACATC
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACCGACAGC
** * * *
16571267 GGGATCGACAGCATGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCGTATTATGCCTCTCCGATC
131 GGGATCGACAGCACACAGAGGGGGATCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCGATC
* * * *
16571332 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
196 GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * *
16571397 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTACGGTAGCAGGATCGGTA
261 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGCATCGATA
* * *
16571462 CCACGTAGTAGAGGGATCGGGCTGATCCCCGGCTTGCGCATTCAGCCTCTCCGGCCGGCTAAGCA
326 CCACGCAG-AGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCGGCCGGCTAAGCA
** * * *
16571527 CCCGCATGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTTCATTCCACGTCTATCCCCAGTCG
390 CCCGCACACCCATTTCATGGGTTGGCCTAGGCATAGGGAGCTCATTCCACGTCTAGCCCCAGTCG
* * *
16571592 GATCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGTAAGGGACCAGGTCGATCCCCGACTTGC
455 GACCGAGGGTTGTGGCAGCGGGACTGACAACACGCAGTAAGGGACCAAGTCGATCCCCGACTTGC
* * *
16571657 GCATTATGTCTCTCCGATCAGCTCAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATG
520 ACATTATGCCTCTCCGATCAGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATG
** * * *
16571722 GAGTTCGTTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAAGATCGACAGCACGTA
585 GAGTTAATTCCCAATCTAAAATCGAACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTA
* * *
16571787 GGGGGGATCGGGCTGATCCCCAG
650 GAGGGGACCAGGCTGATCCCCAG
* * *
16571810 CTTGTGCATTTTGCCTCTCTGGCCAACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGC
1 CTTGTGCATTCTGCCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
16571875 GTACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGACAGTAGGACCGGCAGC
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACCGACAGC
*
16571940 GGGATC-AGCAGCACACA-ATGGGGGA-CTGAGCTGATCCCC-GACTTACGCATTATGCCTCTCC
131 GGGATCGA-CAGCACACAGA-GGGGGATC-GAGCTAATCCCCAG-CTTACGCATTATGCCTCT-C
* * * * *
16572001 ATTCGGCCTTTTTGGCCGACTGAGCTCCTACACGCTTGTTTTATGGGTTGACTTAGGCATACGGA
191 ---C-G-----AT---CGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* **
16572066 GTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTA
244 GTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTA
* * * * * * *
16572131 TGGCAGCAGCATCGATAGCACGCA-AGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTT
309 CGGCAGCAGCATCGATACCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCAGCCTC
* * ** * * *
16572195 TCTGGCCGGCTGAGTGCCCGCACACCTATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCA
374 TCCGGCCGGCTAAGCACCCGCACACCCATTTCATGGGTTGGCCTAGGCATAGGGAGCTCATTCCA
* * **
16572260 TGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTA-CGGGATTGGTAACACGCAG-AAGGGGACC
439 CGTCT-AGCCCCAGTCGGACCGAGGGTTGTGGC-AGCGGGACTGACAACACGCAGTAA-GGGACC
* * * * *
16572323 AAGTCGATCCCTGGCTTGCACATTATGCCTTTCCGA-CTAGCTCAGCGCCCGCACGCTCGTTTCG
501 AAGTCGATCCCCGACTTGCACATTATGCCTCTCCGATC-AGCTCAACGCCCGCACGCTCGTTTCA
* * * * ***
16572387 TGGGTTGACTTAGGCATACT-TAGTTAATTCCCAGTCTAAAATTGGATTGGACCGAGGGTTGC-A
565 TGGGTTGACTTAGGCATA-TGGAGTTAATTCCCAATCTAAAATCGAACCAGACCGAGGGTTGCGA
* * * *
16572450 GTAGTAGGATCGACAACACGTAGAGGGGACCAGGTTGATCCCCAG
629 -CAGCAAGATCGACAACACGTAGAGGGGACCAGGCTGATCCCCAG
** ** **
16572495 CTTGTGCATTCTGCCTCTCCGGCTGACTGAGCCCCCGCACGCTTATTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
16572560 ATATGGAGTTCATTCCATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
16572586 ATACAAAGTT
Statistics
Matches: 645, Mismatches: 108, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
672 4 0.01
673 156 0.24
674 1 0.00
677 1 0.00
678 1 0.00
683 1 0.00
684 95 0.15
685 264 0.41
686 122 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (672 bp):
CTTGTGCATTCTGCCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACCGACAGC
GGGATCGACAGCACACAGAGGGGGATCGAGCTAATCCCCAGCTTACGCATTATGCCTCTCCGATC
GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGCATCGATA
CCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCGGCCGGCTAAGCAC
CCGCACACCCATTTCATGGGTTGGCCTAGGCATAGGGAGCTCATTCCACGTCTAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCGGGACTGACAACACGCAGTAAGGGACCAAGTCGATCCCCGACTTGCA
CATTATGCCTCTCCGATCAGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGG
AGTTAATTCCCAATCTAAAATCGAACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTAG
AGGGGACCAGGCTGATCCCCAG
Found at i:16572893 original size:13 final size:13
Alignment explanation
Indices: 16572875--16572900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16572865 TACGCATTAT
16572875 GCCTCTCCGATCG
1 GCCTCTCCGATCG
16572888 GCCTCTCCGATCG
1 GCCTCTCCGATCG
16572901 ATTGAGCGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:16573469 original size:26 final size:26
Alignment explanation
Indices: 16573440--16573492 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573430 GTTGGCTTAG
16573440 GCATACAG-AGTTCATT-CCATGTCTAA
1 GCATA-AGAAGTTCATTCCCA-GTCTAA
*
16573466 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
16573492 G
1 G
16573493 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:16573491 original size:882 final size:878
Alignment explanation
Indices: 16571839--16574358 Score: 3081
Period size: 882 Copynumber: 2.9 Consensus size: 878
16571829 TGGCCAACTG
* * * *
16571839 AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCGTACGGAGTTCATTCCATGTCTAAGCCCC
1 AGTGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCC
* * * * * *
16571904 AG-CTGGACCGAGGGTTGTGACAGTAGGACCGGCAGCGGGATCAGCAGCACACA-ATGGGGGACT
66 AGTC-GGACCGAGGGTTGTGGCAGTAGGACCGGTAGCGGGATCGGTAGCACGCAGA-GGGGGACC
* ** ** * * **
16571967 GAGCTGATCCCCGACTTACGCATTATGCCTCTCC-ATTCGGCCTTTTTGGCCGACTGAGCTCCTA
129 G-GCTGAT-CCCG-CTTACGCATTATGCCTCTCCGA-TCGGCCTCTCCGATCGATTGAGCGCCCG
*
16572031 CACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTC
190 CACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTC
* * *
16572096 ATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTATGGCAGCAGCATCGATAGCACGCA-AGGGG
255 ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGA-GGG
* * * *
16572160 GACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTTTCTGGCCGGCTGAGTGCCCGCACACCTATT
319 GACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCC-GCTGAGTGCCCGCACGCCTGTT
* * * *
16572225 TCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
383 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGT
* * * * * * * * * *
16572290 GGCTACGGGATTGGTAACACGCAGAAGGGGACCAAGTCGATCCCTGGCTTGCACATTATGCCTTT
448 GGCTGCAGGACTAGTAACACACAGAAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCT
*
16572355 CCGACTAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTTAGTTAATTCCCA
513 CCGACTAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTTAGTTAATTCCCA
* *
16572420 GTCTAAAATTGGATTGGACCGAGGGTTGC-AGTAGTAGGATCGACAACACGTAGAGGGGACCAGG
578 GTCTAAAATCGGATTGGACCGAGGGTTGCGA-TAGTAGGATCGACAACACGTAGAGGGGACCGGG
* * * *
16572484 TTGATCCCC-AGCTTGTGCATTCTGCCTCTCCGGCTGACTGAGCCCCCGCACGCTTATTTCATGG
642 CTAATCCCCGA-CTTGTGCATTCTGCCTCTCCGACTGACTGAGCCCCCGCACGCTCATTTCATGG
** **
16572548 GTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGAT
706 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
* * * *
16572613 CAGACCGGACCAAGGGTTGTAGCAGCAGGACCAACAACAGGACCAACAGCACACAGGAGGGGATC
771 CAGACCGGACCAAGGGTTGCAGCAGCAGGACCAACAACAGGACCAACAGCACACAAGAAGGGACC
* * *
16572678 GGGTTGATCCTCGACTTACGTATTCTGCCTCTCCGACCGGTTA
836 AGGTTGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTA
* * *
16572721 AGTGCTCGTACGTTTGTTTCATGAGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCC
1 AGTGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCC
* ** * * *
16572786 AGTCGGACCCAGGGTTGTGGCAACAGGACCGATAGTGAGATCGGTAGCACGCAGAGGGGGACCGG
66 AGTCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCGGGATCGGTAGCACGCAGAGGGGGACC-G
16572851 GCTGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCCTCTCCGATCGATTGAGCGCCCGCAC
130 GCTGATCC-C-GCTTACGCATTATGCCTCTCCGATCGGCCTCTCCGATCGATTGAGCGCCCGCAC
* * *
16572916 GCTTGTTTCGTGGGTTGACTTAGGTATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
193 GCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
* * *
16572981 CTCAGTCTAAGATCGGACC-GAATCGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGAGAC
258 CCCAGTCTAAGATCGGACCGGACT-GAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGGGAC
* * *
16573045 CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGCCCACACGCCTGTTTCA
322 CGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCCG-CTGAGTGCCCGCACGCCTGTTTCA
* * *
16573110 TGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGGCCCAGCCAGATCGAGGGTTGTGGC
386 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGC
* * *
16573175 TGCAGGACCAATAAAACACAGAAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCCG
451 TGCAGGACTAGTAACACACAGAAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCCG
* *
16573240 ACTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACTTAGTGAATTCCCAGTC
516 ACTAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTTAGTTAATTCCCAGTC
* *** ** * *
16573305 TAAAATGGGACCAGACTAAGGGTTGCGATAGCAGGATCGACAACACGTAGAGGGGATCGGGCTAA
581 TAAAATCGGATTGGACCGAGGGTTGCGATAGTAGGATCGACAACACGTAGAGGGGACCGGGCTAA
* * *
16573370 TCCCCGACTTGTGCATTCTGCCTCTCCAACTGACTGAGCCCCCGCATGCTCATTTCGTGGGTTGG
646 TCCCCGACTTGTGCATTCTGCCTCTCCGACTGACTGAGCCCCCGCACGCTCATTTCATGGGTTGG
16573435 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGAC
711 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
16573500 CGGACCAAGGGTTGCGGCAGCAGGACTAACAGCAGGATCAACAGCACACAAGAAGGGACCAGGTT
776 CGGACCAAGGGTTGCAGCAGCAGGACCAACAACAGGACCAACAGCACACAAGAAGGGACCAGGTT
* **
16573565 GATCCTCGGCTTACGCATTCTGCCTCTCCGATTGGCTA
841 GATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTA
* * *
16573603 AGTGCCCGTACGCTTGTTTCTTGGGTTGGCTTAGGCTTACGAAGTTCATTCCATGTTTAAGCCCC
1 AGTGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCC
* * * * *
16573668 AGTCAGACCGACGGTTGTGGCAGTAGGACTGGTAGCGGGATCGATAGCACGCAGAGGGGGATC-G
66 AGTCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCGGGATCGGTAGCACGCAGAGGGGGACCGG
* * * * *
16573732 --GA-----C-T--GCATTATGCCTTTCCGACCGGCCTCTCCGATCGGTTGAGTGCCCGTACGCT
131 CTGATCCCGCTTACGCATTATGCCTCTCCGATCGGCCTCTCCGATCGATTGAGCGCCCGCACGCT
* * *
16573787 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCC
196 TGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCC
* * * ** ** * *
16573852 AGCCTAAGAAT-GGATCGGACTAAGGGTTGCGATAGCAGGATCGACAGCACGCAG-GGGGGCCGG
261 AGTCTAAG-ATCGGACCGGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGGGACCGG
* * * ** * * * *
16573915 GCTGATCCCCGGCTTACGTATTCTACCTCTCCAGCC-CGTGAGCGCCCGCATGCCCGTTTCATAG
325 GCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCCGC-TGAGTGCCCGCACGCCTGTTTCATGG
* * *
16573979 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCTGGACCAAGGGTTGCGG-TAG
389 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCT-G
* * * * * * ** * * *
16574043 CAAGACTAGTAGCACATAGAGGGGGATCGGGTCGATCCCCGACTTATGAATTATGCCTCTTCGGC
453 CAGGACTAGTAACACACAGAAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGAC
** * * * ** *
16574108 CGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGATTTATGCATA-GGAGTTCATTCCCAGTCTA
518 TAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTTAGTTAATTCCCAGTCTA
* * * * * * * * *
16574172 AGATCAGATTGGACCGAGGGTTTCGGTAGTAGGATCAATAGCACGTAGGGGGGACCGGGC-CATC
583 AAATCGGATTGGACCGAGGGTTGCGATAGTAGGATCGACAACACGTAGAGGGGACCGGGCTAATC
* * * * * * * * *
16574236 CCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCT
648 CCCGACTTGTGCATTCTGCCTCTCCGACTGACTGAGCCCCCGCACGCTCATTTCATGGGTTGGCT
* * * *
16574301 TAGGCATACAGAGGTCATTCCATGTCTAAGCATATGGAGTTCATTCTCAGTTTAAGAT
713 TAGGCATACAGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
16574359 TTTGAGCCAC
Statistics
Matches: 1406, Mismatches: 217, Indels: 48
0.84 0.13 0.03
Matches are distributed among these distances:
864 110 0.08
865 61 0.04
866 167 0.12
867 36 0.03
868 142 0.10
869 5 0.00
870 1 0.00
871 1 0.00
878 2 0.00
880 1 0.00
881 6 0.00
882 866 0.62
883 8 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (878 bp):
AGTGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCGGGATCGGTAGCACGCAGAGGGGGACCGG
CTGATCCCGCTTACGCATTATGCCTCTCCGATCGGCCTCTCCGATCGATTGAGCGCCCGCACGCT
TGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGGGACCGGG
CCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCCGCTGAGTGCCCGCACGCCTGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCCGGACCGAGGGTTGTGGCTGCAG
GACTAGTAACACACAGAAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACTAG
CTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTTAGTTAATTCCCAGTCTAAAA
TCGGATTGGACCGAGGGTTGCGATAGTAGGATCGACAACACGTAGAGGGGACCGGGCTAATCCCC
GACTTGTGCATTCTGCCTCTCCGACTGACTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAG
GCATACAGAGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CAAGGGTTGCAGCAGCAGGACCAACAACAGGACCAACAGCACACAAGAAGGGACCAGGTTGATCC
TCGACTTACGCATTCTGCCTCTCCGACCGGCTA
Found at i:16573836 original size:26 final size:26
Alignment explanation
Indices: 16573807--16573859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573797 GTTGACTTAG
* *
16573807 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
16573833 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
16573859 G
1 G
16573860 AATGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:16574288 original size:156 final size:157
Alignment explanation
Indices: 16573841--16574330 Score: 449
Period size: 156 Copynumber: 3.1 Consensus size: 157
16573831 AAGCATACGA
* * * * * * * *
16573841 AGTTCATTCCCAGCCTAAGAAT-GGATCGGACTAAGGGTTGCGATAGCAGGATCGACAGCACGCA
1 AGTTCATTCCCAGTCTAAG-ATCAGATTGGACCAAGGGTTGCGGTAGCAGGATCAATAGCACGTA
* * * * *
16573905 GGGGGG-CCGGGCTGATCCCCGGCTTACGTATTCTACCTCTCC-AGCCCG-TGAGCGCCCGCATG
65 GGGGGGACCGGGC-GATCCCCGGCTTACGAATTATGCCTCTCCGA-CCGGCTGAGCGCCCGCACG
* * *
16573967 CCCGTTTCATAGGTTGGCTTAGGCATAGGG
128 CTCGTTTCATGGGTTGACTTAGGCATAGGG
** * * * *
16573997 AGTTCATT-CCATGTCTAAGGCCCAG-CTGGACCAAGGGTTGCGGTAGCAAGA-CTAGTAGCACA
1 AGTTCATTCCCA-GTCTAA-GATCAGATTGGACCAAGGGTTGCGGTAGCAGGATC-AATAGCACG
* * * * * * *
16574059 TAGAGGGGGATCGGGTCGATCCCCGACTTATGAATTATGCCTCTTCGGCCGGCTCAGTGCCCGCA
63 TAG-GGGGGACCGGG-CGATCCCCGGCTTACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCA
* *
16574124 CGCTCGTTTCATGGGTTGATTTATGCATA-GG
126 CGCTCGTTTCATGGGTTGACTTAGGCATAGGG
* * *
16574155 AGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTTCGGTAGTAGGATCAATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGTAGCAGGATCAATAGCACGTAG
* * * * *
16574220 GGGGGACCGGGCCATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACGCTC
66 GGGGGACCGGGCGATCCCCGGCTTACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
* **
16574285 GTTTCATGGGTTGGCTTAGGCATACAG
131 GTTTCATGGGTTGACTTAGGCATAGGG
*
16574312 AGGTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
16574331 CATATGGAGT
Statistics
Matches: 263, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
155 4 0.02
156 108 0.41
157 36 0.14
158 77 0.29
159 38 0.14
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGTAGCAGGATCAATAGCACGTAG
GGGGGACCGGGCGATCCCCGGCTTACGAATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATAGGG
Found at i:16576061 original size:158 final size:156
Alignment explanation
Indices: 16575585--16576077 Score: 461
Period size: 159 Copynumber: 3.1 Consensus size: 156
16575575 AAGCATACAT
* * * *
16575585 AGTTCATTCCTAGTCTAAGATTAAACCGGATCGAGGGTTGCGACAGCAGGATCGATAGTACACAG
1 AGTTCATT-CTAGTCTAAGATTAAACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACACAG
* * * * * * * *
16575650 GGGGACCGGCTTGATCCCCGACTTGCGCATTTTGCCTC-TCCGACCGACTGAGCGCCCTTACACC
65 GGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGA-CGGCTGAGCGCCCGTACACT
*
16575714 CGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CGTTTCGTGGGTTGGCTTAGGCATACGG
* **** * * *
16575742 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGATAGCACATAT
1 AGTTCATTCTA-GTCTAAGATTAAACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCAC--AC
* * * * * ** *
16575807 AGGGGGATCGGGCCGAACCCGGGCTTGCGTATTATGCCTCTTC-GACTGGCCCAACGCCCGTACA
63 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGAC-GGCTGAGCGCCCGTACA
* * * * *
16575871 CTTGTTTCCTGGGTTGACTTATGCATGCGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * * *
16575901 AGTTCATTCTTAGTCTAAGATTGGACCGAACCGAGGGCTGTGGCAGCAGGATCAACAGCA-AGCA
1 AGTTCATTC-TAGTCTAAGATTAAACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACA-CA
* * * *
16575965 GGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACGC
64 -GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGACGGCTGAGCGCCCGTACAC
*
16576030 TCGTTTTGTGGGTTGGCTTAGGCATACGG
128 TCGTTTCGTGGGTTGGCTTAGGCATACGG
*
16576059 AGTTCATTCCATGTCTAAG
1 AGTTCATTCTA-GTCTAAG
16576078 CATACGGAGT
Statistics
Matches: 261, Mismatches: 65, Indels: 19
0.76 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 49 0.19
158 89 0.34
159 117 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCTAGTCTAAGATTAAACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACACAGG
GGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGACGGCTGAGCGCCCGTACACTCG
TTTCGTGGGTTGGCTTAGGCATACGG
Found at i:16578810 original size:26 final size:26
Alignment explanation
Indices: 16578780--16578832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16578770 GTTGACTTAG
*
16578780 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* *
16578806 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
16578832 G
1 G
16578833 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:16579101 original size:159 final size:159
Alignment explanation
Indices: 16578863--16580258 Score: 1112
Period size: 159 Copynumber: 8.8 Consensus size: 159
16578853 ACGGTAGTAA
* * * * * * * *
16578863 GATCGGTAGCACGCAGGGGGGATCGAGCCAATCCCTGGCTTGCACATTGTACCTCTTCGACCGGC
1 GATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGC
* * * **
16578928 T-GGCTGCCCGCACGCACGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGC
66 TCAGC-GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
16578992 CCCA-TCCGGATCGAGGGTTGTGGCAGCCG
130 CCCAGACCAGATCGAGGGTTGTGGCAGCAG
* * * *
16579021 GACCGGCAGCACGCAGGGGAGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGG
1 GATCGGCAGCACGCAGGGG-GGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGG
* * * *
16579086 CTCAGCACCCGCACGCTCGTTT--TGCCGGTTGACTTATGCATACAGAGTTCATTCTCA-GTCTA
65 CTCAGCGCCCGCACGCTCGTTTCATG--GGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTA
* * * * * ** *
16579148 AG-ACCGGATCAGACCAAGGGTTACGGTAGCAG
127 AGCCCCAGACCAGATCGAGGGTTGTGGCAGCAG
* * * ** ** * *
16579180 GATCGACAGCACACAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTATCTCTCCGACCGGC
1 GATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGC
* * * * * *
16579245 TGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCC
66 TCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* *
16579310 CCA-ACCGGATCGAGGGTTGTGGCAGCGG
131 CCAGACCAGATCGAGGGTTGTGGCAGCAG
* * * * * * * * *
16579338 GACCGGCAGCACGCAGAGGGGGACCGAGCCGATCCTTGGCTTGTGCATTATGCCTCTTCGACCAG
1 GATCGGCAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGG
* * * *
16579403 CTCAGCAG-CCGCACGCTCGTTTCATGGTTTGACTTATGCATACAGAGTTCATTTCCA-GTCTAA
65 CTCAGC-GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAA
** * *
16579466 G-ATCAGACC-GAACTGAGGGTTGTGGCAGTAG
128 GCCCCAGACCAGATC-GAGGGTTGTGGCAGCAG
** * * * * * *
16579497 GATCGGCAGCATACAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCAGTCGGC
1 GATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGC
* * * * * * * *
16579562 TGAACGCCTGCACGCCCATTTCATTGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCC
66 TCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
*
16579627 CCAG-TCAGATCGAGGGTTGTGGCAGCAG
131 CCAGACCAGATCGAGGGTTGTGGCAGCAG
* * ** * * * * **
16579655 GA-CTGGTAGCACGTAGAGGCAGACCGGG-CTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTT
1 GATC-GGCAGCACGCAG-GGGGGATCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGCC
* * * * * *
16579718 GACTCAGCACCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
63 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * * * *
16579782 AG-ATCAGACTAGACCGAGGGTTATGGCAGTAG
127 AGCCCCAGACCAGATCGAGGGTTGTGGCAGCAG
** * * * * *
16579814 GATCAACAGCACGGA-GGGGGACCAGGTCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGG
1 GATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGCCGG
* * * * * *
16579877 CTAAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGC
65 CTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * *
16579942 CCTAG-CCAGATAGATGGTTGTGGTAGCAG
130 CCCAGACCAGATCGAGGGTTGTGGCAGCAG
* ** ** * * *
16579971 GATCGGTAGCATACAGAGGCAGATCGGG-CTGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCG
1 GATCGGCAGCACGCAG-GGGGGATCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCG
* * * ** * *
16580035 GCT-AGGTGCCCGCACGTTCGTTTCATAGGTTCACTTACGCATACGAAGTTCATTCC-TAGTCTA
64 GCTCA-GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
** * *
16580098 AG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG
127 AGCCCCAGACCAGATCGAGGGTTGTGGCAGCAG
* * * * * *
16580130 GATCGACACCACGC-GGGTGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCGA
1 GATCGGCAGCACGCAGGG-GGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGG
* *
16580194 CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16580259 ATACGGAGTT
Statistics
Matches: 951, Mismatches: 246, Indels: 81
0.74 0.19 0.06
Matches are distributed among these distances:
156 5 0.01
157 120 0.13
158 343 0.36
159 466 0.49
160 17 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCGGCAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGC
TCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGACCAGATCGAGGGTTGTGGCAGCAG
Found at i:16579388 original size:317 final size:314
Alignment explanation
Indices: 16578806--16580258 Score: 1597
Period size: 317 Copynumber: 4.6 Consensus size: 314
16578796 CCCAGTCTAA
* * ** * * * **
16578806 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAGGGTTACGGTAGTAAGATCGGTA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCAGA-CAGACCGAGGGTTATGGCAGTAGGATCGACA
* * * * * * *
16578871 GCACGCAGGGGGGATCGAGCCAATCCCTGGCTTGCACATTGTACCTCTTCGACCGGCTG-GCTGC
64 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG-TGC
* * * * * *
16578935 CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCATCCG
128 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
16579000 GATCGAGGGTTGTGGCAGCCGGACCGGCAGCACGCAG-GGGAGGATCGGGTCGATCCCTGGCTTG
193 GATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGCA-GACCGGGCCGATCCCCGGCTTG
* * *
16579064 TGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTTGCCGGTTGACTTAT
257 TGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCG-TGGTTGACTTAT
* * * * * *
16579123 GCATACAGAGTTCATTCTCAGTCTAAGACCGGATCAGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTC-CAGTCTAAGATCAGA-CAGACCGAGGGTTATGGCAGTAGGATCGACA
* * * *
16579188 GCACACAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTATCTCTCCGACCGGCTGAGTGCC
64 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCC
* * *
16579253 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAACCGG
129 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* ** * **
16579318 ATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGAGCCGATCCTTGGCTTGTG
194 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGCAGACCGGGCCGATCCCCGGCTTGTG
* * * *
16579383 CATTATGCCTCTTCGACCAGCTCAGCAGCCGCACGCTCGTTTCATGGTTTGACTTAT
259 CATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTGG-TTGACTTAT
* * * *
16579440 GCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACAGAGTTCA-TTCCAGTCTAAGATCAGACAG-ACCGAGGGTTATGGCAGTAGGATCGACA
** * * * * **
16579505 GCATACAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTC-AGTCGGCTGAACGC
64 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGTGC
* * * *
16579569 CTGCACGCCCATTTCATTGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCCAGTCA
128 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
16579634 GATCGAGGGTTGTGGCAGCAGGACTGGTAGCACGTAGAGGCAGACCGGGCTGATCCCCGGCTTGT
193 GATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGCAGACCGGGCCGATCCCCGGCTTGT
** * * * *
16579699 GCATTATGCCTCTTCGGTTGACTCAGCACCTGTACGCTCGTTTCGTGGGTTGACTTAG
258 GCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGT-GGTTGACTTAT
* *
16579757 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTATGGCAGTAGGATCAACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGAC-AGACCGAGGGTTATGGCAGTAGGATCGACA
* * * * * *
16579822 GCACGGA-GGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCC
64 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCC
* *
16579886 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCTAGCCAG
129 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * ** * * **
16579951 ATAGATGGTTGTGGTAGCAGGATCGGTAGCATACAGAGGCAGATCGGGCTGATCCCCGGCTTGCA
194 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGCAGACCGGGCCGATCCCCGGCTTGTG
* ** * * * *
16580016 CATTTTGCCTCTTCGGCCGGCT-AGGTGCCCGCACGTTCGTTTCATAGGTTCACTTAC
259 CATTATGCCTCTTCGGCCGGCTCA-GCACCCGCACGCTCGTTTCGT-GGTTGACTTAT
* * *
16580073 GCATAC-GAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAG-AGTTCATTCC-AGTCTAAGATCAGA-CAGACCGAGGGTTATGGCAGTAGGATCGAC
* * * * * **
16580137 ACCACGC-GGGTGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCA
63 AGCACGCAGGG-GGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTG
* * *
16580201 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16580259 ATACGGAGTT
Statistics
Matches: 965, Mismatches: 154, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
315 4 0.00
316 267 0.28
317 683 0.71
318 11 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (314 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGACAGACCGAGGGTTATGGCAGTAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCCCG
CACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
CGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGCAGACCGGGCCGATCCCCGGCTTGTGCA
TTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTGGTTGACTTAT
Found at i:16580154 original size:633 final size:632
Alignment explanation
Indices: 16578806--16580258 Score: 1765
Period size: 633 Copynumber: 2.3 Consensus size: 632
16578796 CCCAGTCTAA
* * ** ** * * *
16578806 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATTGGACCGAGGGTTACGGTAGTAAGATCGGTA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * * * *
16578871 GCACGCAGGGGGGATCGAGCCAATCCCTGGCTTGCACATTGTACCTCTTCGACCGGCTG-GCTGC
65 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTCG-CCGGCTGAGC-GC
* * *
16578935 CCGCACGCACGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCATCCG
128 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCA
* * * *
16579000 GATCGAGGGTTGTGGCAGCCGGACCGGCAGCACGCAGGGGAGGATCGGGTCGATCCCTGGCTTGT
193 GATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGGGCAGGACCGGGTCGATCCCCGGCTTGT
* * *
16579065 GCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTTGCCGGTTGACTTATGCATACA
258 GCATTATGCCTCTTCGGTCGACTCAGCACCCGCACGCTCGTTTCGCCGGTTGACTTAGGCATACA
* * * *
16579130 GAGTTCATTCTCAGTCTAAGACCGGATCAGACCAAGGGTTACGGTAGCAGGATCGACAGCACACA
323 GAGTTCATTCCCAGTCTAAGACCAGATCAGACCAAGGGTTACGGCAGCAGGATCAACAGCACACA
* * * *
16579195 GGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTATCTCTCCGACCGGCTGAGTGCCCGCACGC
388 GGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCACGC
* *
16579260 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAACCGGATCGAGG
453 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAACCAGATAGAGG
* * ** ** **
16579325 GTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGAGCCGATCCTTGGCTTGTGCATTATG
518 GTTGTGGCAGCAGGACCGGCAGCACACAGAGGCAGACCGAGCCGATCCCCGGCTTGCACATTATG
* *
16579390 CCTCTTCGACCAGCTCAGCAGCCGCACGCTCGTTTCATGGTTTGACTTAT
583 CCTCTTCGACCAGCTCAGCAGCCGCACGCTCGTTTCATGGTTTCACTTAC
* *
16579440 GCATAC-AGAGTTCATTTCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGTAGGATCGGC
1 GCATACGA-AGTTCA-TTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGC
** * * * * *
16579504 AGCATACAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCAGTCGGCTGAACGC
64 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTC-GCCGGCTGAGCGC
* * * * *
16579569 CTGCACGCCCATTTCATTGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCCAGT-C
128 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCC
* * *
16579633 AGATCGAGGGTTGTGGCAGCAGGACTGGTAGCACGTAGAGGCA-GACCGGG-CTGATCCCCGGCT
192 AGATCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAG-GGCAGGACCGGGTC-GATCCCCGGCT
* * * **
16579696 TGTGCATTATGCCTCTTCGGTTGACTCAGCACCTGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
255 TGTGCATTATGCCTCTTCGGTCGACTCAGCACCCGCACGCTCGTTTCGCCGGTTGACTTAGGCAT
* * * * *
16579761 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTATGGCAGTAGGATCAACAGCA
320 ACAGAGTTCATTCCCAGTCTAAGACCAGATC-AGACCAAGGGTTACGGCAGCAGGATCAACAGCA
** * * * *
16579825 CGGA-GGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGC
384 CACAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGC
* * * *
16579889 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCTAGCCAGATA
449 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAACCAGATA
* * * * * * * *
16579954 GATGGTTGTGGTAGCAGGATCGGTAGCATACAGAGGCAGATCGGGCTGATCCCCGGCTTGCACAT
514 GAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGCAGACCGAGCCGATCCCCGGCTTGCACAT
* * * ** *
16580019 TTTGCCTCTTCGGCCGGCT-AGGTGCCCGCACGTTCGTTTCATAGG-TTCACTTAC
579 TATGCCTCTTCGACCAGCTCAGCAG-CCGCACGCTCGTTTCAT-GGTTTCACTTAC
* *
16580073 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCA
* * * * *
16580138 CCACGC-GGGTGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCAC
65 GCACGCAGGG-GGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTC-GCCGGCTGAGCGC
* *
16580202 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16580259 ATACGGAGTT
Statistics
Matches: 688, Mismatches: 118, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
632 9 0.01
633 354 0.51
634 315 0.46
635 10 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (632 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAG
CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTCGCCGGCTGAGCGCCCG
CACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCAGAT
CGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGGGCAGGACCGGGTCGATCCCCGGCTTGTGCA
TTATGCCTCTTCGGTCGACTCAGCACCCGCACGCTCGTTTCGCCGGTTGACTTAGGCATACAGAG
TTCATTCCCAGTCTAAGACCAGATCAGACCAAGGGTTACGGCAGCAGGATCAACAGCACACAGGG
GGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCACGCCCA
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAACCAGATAGAGGGTT
GTGGCAGCAGGACCGGCAGCACACAGAGGCAGACCGAGCCGATCCCCGGCTTGCACATTATGCCT
CTTCGACCAGCTCAGCAGCCGCACGCTCGTTTCATGGTTTCACTTAC
Found at i:16580261 original size:26 final size:26
Alignment explanation
Indices: 16580231--16580283 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16580221 GTTGGCTTAG
16580231 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16580257 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16580283 G
1 G
16580284 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16580955 original size:26 final size:26
Alignment explanation
Indices: 16580921--16580971 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16580911 TAACTTAGGT
*
16580921 ATACGGAGTTCATACCTAGTCTAAGC
1 ATACAGAGTTCATACCTAGTCTAAGC
*
16580947 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATACCTAGTCTAAG
16580972 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATACCTAGTCTAAGC
Found at i:16581409 original size:158 final size:158
Alignment explanation
Indices: 16580952--16581445 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 158
16580942 TAAGCATACA
* * * *
16580952 GAGTTCATTCC-TAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAATAGGATTGACAGCACGT
1 GAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
* * * *
16581016 AGGGGGGACCGA-CTGATCCCCAACTTGCGCATTCTGCCTCTCC-AGTCGGTTAAGTGCCCGCAC
65 AGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACT-GGCTAAGTGCCCGTAC
*
16581079 GCTCGTTTCGTGGGTTGGCTTAGGCATAGG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATATG
* * ** * * * * ** * * *
16581109 GAGTTCATTCCATGTTTGAGCCCCAG-TCGGGCTGAGGGTTGTGGCAGCGGGACCGGCAGCACGC
1 GAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
* * * * * * * *
16581173 AGAGGAGGATCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCATG-CCGGCTTAGTGCCCGTA
65 AG-GGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTC-CGACTGGCTAAGTGCCCGTA
* *
16581237 TGCTCGTTTCGTGGGTTGACTTAGGCATATG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATATG
* * * * **
16581268 GAGCTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTACAACAGTAGGATCGACAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
* * * **
16581332 AGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACTGACTGAGCACCCGTACG
65 AGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGTGCCCGTACG
*
16581397 CTCGTTTCGTGGGTTGGCTTAGGCGTATG
130 CTCGTTTCGTGGGTTGGCTTAGGCATATG
16581426 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
16581446 CATACGGAGT
Statistics
Matches: 260, Mismatches: 67, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
157 47 0.18
158 105 0.40
159 105 0.40
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTA
GGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGTGCCCGTACGC
TCGTTTCGTGGGTTGGCTTAGGCATATG
Found at i:16581594 original size:184 final size:184
Alignment explanation
Indices: 16581261--16581630 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
16581251 GTTGACTTAG
* * **
16581261 GCATATGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAACAGTAGGATCGACA
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAACAGGATCGACA
** * * *
16581326 GCACGTAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGACTGACTGAGCACC
66 GCACACAGGAGGGACCGAGCTGATCCCCGACTCGCGCATCCTACCTCTCCGACTGACTGAGCACC
* * * * *
16581391 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCGTATGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * ** *
16581445 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAATCGAGGGTTGCGGCAACAGGATCGGCA
1 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAACAGGATCGACA
* * *
16581510 GCACACAGGAGGGATCG-GCTCGATCCCCGACTCGCGCATCCTACCTCTCTGACCTG-CTGAGCG
66 GCACACAGGAGGGACCGAGCT-GATCCCCGACTCGCGCATCCTACCTCTCCGA-CTGACTGAGCA
*
16581573 CCTGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16581629 GC
1 GC
16581631 CCCAATCGAA
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 3 0.02
184 151 0.96
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAACAGGATCGACA
GCACACAGGAGGGACCGAGCTGATCCCCGACTCGCGCATCCTACCTCTCCGACTGACTGAGCACC
CGCACGCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16582165 original size:26 final size:26
Alignment explanation
Indices: 16582129--16582181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16582119 GTTGGCTTAG
16582129 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16582155 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16582181 G
1 G
16582182 AGTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16582759 original size:26 final size:26
Alignment explanation
Indices: 16582708--16582759 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16582698 TTAGCTTAGC
* *
16582708 CATACGGAGTTCATTCCATGTTTAAG
1 CATACGGAGTTCATTCCATATCTAAG
16582734 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
16582760 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:16583111 original size:26 final size:26
Alignment explanation
Indices: 16583075--16583127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16583065 GTTGACTTAG
*
16583075 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16583101 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16583127 G
1 G
16583128 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16583402 original size:159 final size:159
Alignment explanation
Indices: 16583153--16583604 Score: 414
Period size: 159 Copynumber: 2.8 Consensus size: 159
16583143 GGGTTGCGGT
* * * * * * * * *
16583153 AGCAGGATAGGCAGCACGTAGGGGGGACC-AGGCCAATCCCCGGCTAGCGCATTCTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCGCATTATGCCACTCCG
* * * ** **
16583217 ACCGGCTGAGCACCCGCATGCC-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GCCGGCTCAGCGCCCG-AACCCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
* * * * * *
16583281 CTAAGCCCT-AGCTGGACCGAGGGTTGTACC
129 CTAAGCACTGAACAGGACCGAAGGTTGCAAC
* * *
16583311 AATC-GG-TCCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTT
1 -AGCAGGAT-CGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCACTC
* * *
16583374 CGGCCGGCTCAGTGCCCGAACCCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCA-
63 CGGCCGGCTCAGCGCCCGAACCCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCAT
*
16583438 GTCTAAG-ATTGAACAGGACCGAAGGTTGCAAC
127 GTCTAAGCACTGAACAGGACCGAAGGTTGCAAC
* * * * * * * *
16583470 AGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCGGGCTTGCGCATTTTGCCACTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCACTCCGG
* * * * * *
16583535 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
66 CCGGCTCAGCGCCCGAACCCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
16583600 AAGCA
131 AAGCA
16583605 TACAGAGTTC
Statistics
Matches: 236, Mismatches: 47, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 108 0.46
159 119 0.50
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCACTCCGG
CCGGCTCAGCGCCCGAACCCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCACTGAACAGGACCGAAGGTTGCAAC
Found at i:16583581 original size:158 final size:158
Alignment explanation
Indices: 16583101--16583602 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
16583091 CCCAGTCTAA
* * * * * *** * *
16583101 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGTCTGAGGGTTGCGGTAGCAGGATAGGC
1 GCATACAGAGTTCATT-CCATGTCTAAGATTGAACAGGACCGAGGGTTGCAACAGCAGGATCGAC
* * * * * * *
16583165 AGCACGTAGGGGGGACCAGGCCAATCCCCGGCTAGCGCATTCTACCTCTCCGACCGGCTGAGCAC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* *
16583230 CCGCATGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
** ** * * * * *
16583259 GCATAGGGAGTTCATTCCATGTCTAAGCCCT-AGCTGGACCGAGGGTTGTACCAATC-GG-TCCG
1 GCATACAGAGTTCATTCCATGTCTAAG-ATTGAACAGGACCGAGGGTTGCAAC-AGCAGGAT-CG
* * * * *
16583321 ACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAG
63 ACAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * * * *
16583386 TGCCCGAACCCTCATTTCATAGGTTGACTTAG
127 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
16583418 GCATACAGAGTTCATTCCCA-GTCTAAGATTGAACAGGACCGAAGGTTGCAACAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATTGAACAGGACCGAGGGTTGCAACAGCAGGATCGAC
* * * * * * *
16583482 AGCACGTAGGGGGGATCGGGCTGGTCCCGGGCTTGCGCATTTTGCCACTCCGGTCGGCTGAGCGC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* *
16583547 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
16583576 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
16583603 CATACAGAGT
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.03
158 138 0.51
159 120 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATTGAACAGGACCGAGGGTTGCAACAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:16583612 original size:26 final size:26
Alignment explanation
Indices: 16583576--16583628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16583566 GTTGGCTTAG
16583576 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16583602 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16583628 G
1 G
16583629 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16583809 original size:26 final size:26
Alignment explanation
Indices: 16583773--16583825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16583763 GTTGACATAG
*
16583773 GCATGCAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16583799 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16583825 G
1 G
16583826 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16584151 original size:26 final size:26
Alignment explanation
Indices: 16584115--16584167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16584105 GTTGGCTTAC
16584115 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16584141 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16584167 G
1 G
16584168 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16585343 original size:158 final size:157
Alignment explanation
Indices: 16584863--16585364 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 157
16584853 CCTAGTCTAA
* *
16584863 GCATACGGAGTTCATTCCCAGTCGAAGATCAGATCCGATCGAGGGTTGC-AGCAGCAGGAT-TAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-CGATCGAGGGTTGCGA-CAGCAGGATCGA-
* * * * * * * * *
16584926 CAGCACGTAGGGGGGATCAGACCCATCCCTGACTTACGAATTCTGCCTGTCCGGTCGGTTGAGTG
63 CAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGTATTCTGCCTCTTCGGCCGGTTGAGCG
*
16584991 CCCACACGCCCATTTCGTGGGTTGGCTTAG
128 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* ** * * ** ** *
16585021 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TAGGATCGAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGAT-CGATCGAGGGTTGCGACAGCAGGATCGA
* * * * * * *
16585084 CAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGC-TCATTATGCCTCTTCGACCGGTTCAG
63 CAGCACGTAG-GGGGGATCGGGCCGATCCCCGACTTACGT-ATTCTGCCTCTTCGGCCGGTTGAG
* * * *
16585148 CGCCCGCACGCTCGTTTCATGGGTTGACTTCA-
126 CGCCCACACGCTCATTTCGTGGGTTGGCTT-AG
* * * * *
16585180 ACATACGGAGTTCATTCCCAGTCTATGATCGGATCGAACCGAAGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG-ATCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
16585245 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGTGTTCTGCCTTTTCGGCCGGCTGAGCACC
65 GCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGTATTCTGCCTCTTCGGCCGGTTGAGCGCC
16585310 CACACGCTCATTTCGTGGGTTGGCTTAG
130 CACACGCTCATTTCGTGGGTTGGCTTAG
*
16585338 GCATACGGAGTTCAAT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16585365 CATACGGAGT
Statistics
Matches: 263, Mismatches: 68, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.03
158 138 0.52
159 114 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGATCGAGGGTTGCGACAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCCGACTTACGTATTCTGCCTCTTCGGCCGGTTGAGCGCCC
ACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16586604 original size:25 final size:26
Alignment explanation
Indices: 16586569--16586620 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16586559 GTTGACCTAG
*
16586569 GCATACGAAGTTTATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
16586595 GCATA-GAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
16586620 G
1 G
16586621 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:16586946 original size:26 final size:26
Alignment explanation
Indices: 16586910--16586962 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16586900 GTTGACTTAT
16586910 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16586936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16586962 G
1 G
16586963 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16587106 original size:184 final size:185
Alignment explanation
Indices: 16586751--16587121 Score: 432
Period size: 184 Copynumber: 2.0 Consensus size: 185
16586741 GTTGGCTTGG
* * * *
16586751 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGACTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTGCGGTAGCAGGACTGACA
* * * * *
16586816 GCACGCAGAGGGGGATCGATCCGATTCTCGGCTTGCACATTCTACCTCTCCGACTGGCTAAGCGC
66 GCACGCAGAGGGGGACCGATCCGATCCCCAGCTTGCACATTCTACCTCTCCGACTGGCTAAGCAC
* *
16586881 CCACAAGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCA-GTCTAA
131 CCACAAGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * * *
16586936 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGCAGGA-TCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCAACCGGACCGAGGGTTGCGGTAGCAGGACT-GA
* * * *
16586999 CAGCACGTA-AGGGGGACCAGGT-CGATCCCCAGCTTGCGCATTCTACCTCTCCGACTGGCTGAG
64 CAGCACGCAGAGGGGGACC-GATCCGATCCCCAGCTTGCACATTCTACCTCTCCGACTGGCTAAG
* * * *
16587062 CACCTGCAC-A-CCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CACC--CACAAGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
16587120 GC
1 GC
16587122 CCCAGTCAGA
Statistics
Matches: 157, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
183 3 0.02
184 88 0.56
185 60 0.38
186 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTGCGGTAGCAGGACTGACA
GCACGCAGAGGGGGACCGATCCGATCCCCAGCTTGCACATTCTACCTCTCCGACTGGCTAAGCAC
CCACAAGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:16587171 original size:343 final size:342
Alignment explanation
Indices: 16586519--16587284 Score: 965
Period size: 343 Copynumber: 2.2 Consensus size: 342
16586509 CTTCGACCGG
* * * ** * * * *
16586519 CCTCTTCGGTCGGCTGAGCACCCGTACGCTCATTTCGTGGGTTGACCTAGGCATACGAAGTTTAT
1 CCTCTCCGCTCGGCTAAGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
16586584 CCCTAGTCTAAGCATA-GAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAG
66 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * *
16586648 CAGGATCGGTAGCACGCAGAGGGGACCGGGCAGTCCCCGACTTACGCATTCTGCCTCTCCGAATG
131 CAGGATCGGCAGCACGAAGAGGGGACCGGGCAGTCCCCGACTTACGCATTCTACCTCTCCGAATG
* *
16586713 GCTGAGCACCCTCACGCCCATTTTGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAG
196 GCTGAGCACCCTCACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * *
16586778 CCCCAACCGGACCGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGAGGGGGATCGATCCGATTC
261 CCCCAACCAGACCGAGGGTTATGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGAGCCGATCC
* *
16586843 TCGGCTTGCACATTCTA
326 CCAGCTTGCACATTCTA
* *
16586860 CCTCTCCGACT-GGCTAAGCGCCCACAAGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCA
1 CCTCTCCG-CTCGGCTAAGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
16586924 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGGT
65 TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGT
* *
16586988 AGCAGGATCGGCAGCACGTAAG-GGGGACCAGGTC-GATCCCC-AGCTTGCGCATTCTACCTCTC
129 AGCAGGATCGGCAGCACG-AAGAGGGGACC-GGGCAG-TCCCCGA-CTTACGCATTCTACCTCTC
*
16587050 CGACTGGCTGAGCA-CCTGCACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
190 CGAATGGCTGAGCACCCT-CACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
** * * *
16587114 GTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGGA-TCGATAGCACGTAGAGGGGGATCGG
254 GTCTAAGCCCCAACCAGACCGAGGGTTATGGCAGCGGGACT-GACAGCACGCAGAGGGGGATCGA
*
16587178 GCCGATCCCCAGCTTGCTCATTCTA
318 GCCGATCCCCAGCTTGCACATTCTA
** * * * * * * *
16587203 CCTCTTTGGTCGGTTGAGCACCCACATGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGCTCGGCTAAGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
16587268 -TCCATGTCTAAGCATAC
66 CCCCA-GTCTAAGCATAC
16587285 ATCGTAGCAT
Statistics
Matches: 365, Mismatches: 49, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
341 68 0.19
342 75 0.21
343 222 0.61
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (342 bp):
CCTCTCCGCTCGGCTAAGCACCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
CAGGATCGGCAGCACGAAGAGGGGACCGGGCAGTCCCCGACTTACGCATTCTACCTCTCCGAATG
GCTGAGCACCCTCACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAACCAGACCGAGGGTTATGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGAGCCGATCC
CCAGCTTGCACATTCTA
Found at i:16587919 original size:26 final size:26
Alignment explanation
Indices: 16587883--16587935 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16587873 GTGGACTTAG
16587883 GCATACGGAGTTCAGCCCCAGTCTAA
1 GCATACGGAGTTCAGCCCCAGTCTAA
**
16587909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGCCCCAGTCTAA
16587935 G
1 G
16587936 AACGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAGCCCCAGTCTAA
Found at i:16588824 original size:26 final size:26
Alignment explanation
Indices: 16588788--16588840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16588778 GTTGACTTAG
*
16588788 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16588814 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16588840 G
1 G
16588841 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16589289 original size:158 final size:158
Alignment explanation
Indices: 16588814--16589315 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 158
16588804 CCTAGTCTAA
* * *
16588814 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAACTGAACCGAGGGTTATGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAAACCGAACTGAGGGTTATGGCAGTAGGATCGAC
* * ** * * * *
16588878 AGAACGCAGAGGGGATTAGGCTGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGACTGACCGA
65 AGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCAGACCGACTGAAC-A
* *
16588943 CAACACAC-C-CGTTTCATGGGTTGGCTTAG
129 C-CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * **
16588972 GCATA-AGGAATTCATTCTATGTCTAAGCCCCAGCCAAACTGAGGGTTATGGCAGTGGGATCGGT
1 GCATACA-GAGTTCATTCCATGTCTAAGATCAAACCGAACTGAGGGTTATGGCAGTAGGATCGAC
* * * * * *
16589036 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCA-ACAGGCTCAAC
65 AGCACGCAG-GGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCT-CAGACCGACTGAAC
* * * *
16589100 TCCCGAACGCTCGTTTCATGGTTTGACTTAG
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * *
16589131 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTACGGTAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAAACCGAACTGAGGGTTATGGCAGTAGGATCGAC
* * * *
16589195 AGCACGCAGGGGGGACCAGGCTGATCCTCGACTTACGCATTCTGCCTCTCAGACCGACTGAGCAC
65 AGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCAGACCGACTGAACAC
**
16589260 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
16589289 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
16589316 CATACAGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.04
158 144 0.53
159 111 0.41
160 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAAACCGAACTGAGGGTTATGGCAGTAGGATCGACA
GCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCAGACCGACTGAACACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16589340 original size:26 final size:26
Alignment explanation
Indices: 16589289--16589341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16589279 GTTGGCTTAG
* *
16589289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
16589315 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
16589341 G
1 G
16589342 ATCATACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:16590224 original size:26 final size:26
Alignment explanation
Indices: 16590194--16590246 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16590184 GTTGACTTAG
16590194 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16590220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16590246 G
1 G
16590247 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16590442 original size:26 final size:26
Alignment explanation
Indices: 16590390--16590442 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16590380 GTTGGCTTAG
*
16590390 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
16590416 GCATATGGAGTTTATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16590442 G
1 G
16590443 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16596888 original size:59 final size:59
Alignment explanation
Indices: 16596794--16596910 Score: 148
Period size: 59 Copynumber: 2.0 Consensus size: 59
16596784 CGGGATTGGC
* * *
16596794 AGCACGTACAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTT-CGACCGGT
1 AGCACATACAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCT-TTCCGACCGGT
* * *
16596853 AGCACATAGAGGGGGATCGGG-TCGATCGCCAGCTTGCGCATTATGCCTTTCCGACCGG
1 AGCACATACAGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTATGCCTTTCCGACCGG
16596911 CTTAGCACCC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
58 3 0.06
59 47 0.94
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (59 bp):
AGCACATACAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTTTCCGACCGGT
Found at i:16598055 original size:26 final size:26
Alignment explanation
Indices: 16598019--16598097 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16598009 GTTGACTTAG
*
16598019 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16598045 GCATATAGAGTTCCTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16598071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16598097 G
1 G
16598098 ATTAGACCAG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16598381 original size:159 final size:158
Alignment explanation
Indices: 16598134--16598890 Score: 451
Period size: 159 Copynumber: 4.8 Consensus size: 158
16598124 GTAGGATCGA
* * * * * * * * ** **
16598134 CAGCACGCAG-GAGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCACTCCGACCGATTGTGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGC
* * *
16598198 ACCCGCACGTTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGC
66 GCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGCCCCAGC
* *
16598263 TGAACCGAGGGTTATGGCAGCGGGACTGG
130 TGAACCGAGAGTTGTGGCAGCGGGACTGG
* *
16598292 CAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTTCGACCGGCTCAGT
1 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGC
* * * * * * **
16598357 GCCCGGATGCTCGTTCCATGGGTTGACTTATGCAT-GCGGATTTCATTCGTAGTCTAAG-ATCAG
66 GCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCAT-GTCTAAGCCCCAG
* * * * *
16598420 ATCGGACCGAGAGTTGCGGTAGCAGGA-TCGG
129 CT-GAACCGAGAGTTGTGGCAGCGGGACT-GG
* * * * * * * * * ** *
16598451 TAGCACGCAG-GCGGGATCGGGCTGATCCCCGGCTTACACATTTTGTCTCTCCGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGC
* * * *
16598515 ACTCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAA
66 GCCCGCACGCTC-GTTCCATGGGTTGGCTTAGGCATAGGGAGTTCA-TTCATGTCTAAGCCCCAG
* * * *
16598579 C-CAGACCAAGAGTTGTGGCTGCGAGACTGG
129 CTGA-ACCGAGAGTTGTGGCAGCGGGACTGG
** * * * * *
16598609 CAGCACAAAAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGTTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGC
* * * * ** * ** * ***
16598674 GCCCGTACGCTCATTTCGTGGGTTAACTTATGCATACAGATTTCATTCCCA-GTCTAA-AATCAG
66 GCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATT--CATGTCTAAGCCCCAG
* * * * * *
16598737 AC-CAGACTGAGGGTTGCGGCAGCAGGA-TCGA
129 -CTGA-ACCGAGAGTTGTGGCAGCGGGACT-GG
* ** * * * * * * * *
16598768 TAGCACATAG-GGGGGACCAGGCCGATCCCCTGCTTGCGCATTCTGCCTC-TCCAGTCGGCTGAG
1 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGA-CCGGCTCAG
* * * *
16598831 CGCCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CATGTCTAAGC
16598891 ATACGGGGTT
Statistics
Matches: 448, Mismatches: 131, Indels: 39
0.72 0.21 0.06
Matches are distributed among these distances:
157 7 0.02
158 213 0.48
159 225 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGC
GCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCATGTCTAAGCCCCAGCT
GAACCGAGAGTTGTGGCAGCGGGACTGG
Found at i:16598656 original size:317 final size:317
Alignment explanation
Indices: 16598071--16598890 Score: 928
Period size: 317 Copynumber: 2.6 Consensus size: 317
16598061 CCCAGTCTAA
* * * * * * * *
16598071 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACAGATTTCATTCCCAGTCTAAAATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGATA
* * * * * * * ** *
16598136 GCACGCAGGAGGGACC-GAGCCGATCCCCGACTTGCGCATTCTGCCACTCC-GACCGATTGTGCA
66 GCACACAGGCGGGACCAG-GCCGATCCCCGGCTTACACATTCTGCCTCTCCAG-TCGGCTGAGCA
* * * * *
16598199 CCCGCACGTTCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGCT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCA
* * * ** * * *
16598264 GAACCGAGGGTTATGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTG
194 GAACCAAGAGTTATGGCAGCGAGACTGGCAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTG
* * * *
16598329 CACATTATGCCTCTTCGACCGGCTCAGTGCCCGGATGCTCGTTCCATGGGTTGACTTAT
259 CACATTATGCCTCTTCGACCGGCTCAGCGCCCGGACGCTCATTCCATGGGTTAACTTAT
* * ** * * * * *
16598388 GCATGCGGATTTCATTCGTAGTCTAAGATCAGATCGGACCGAGAGTTGCGGTAGCAGGATCGGTA
1 GCATACAGATTTCATTCCCAGTCTAAAATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGATA
* * * * * * * *
16598453 GCACGCAGGCGGGATCGGGCTGATCCCCGGCTTACACATTTTGTCTCTCCGGTCGGCTGAGCACT
66 GCACACAGGCGGGACCAGGCCGATCCCCGGCTTACACATTCTGCCTCTCCAGTCGGCTGAGCACC
*
16598518 CGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAACCA
131 CGCACGCTC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ACCA
* * *
16598582 G-ACCAAGAGTTGTGGCTGCGAGACTGGCAGCACAAAAAGGGGGACCGGGTCGATCCTCGACTTG
194 GAACCAAGAGTTATGGCAGCGAGACTGGCAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTG
* * * * *
16598646 CGCATTATGCCTCTTCGACCGGTTCAGCGCCCGTACGCTCATTTCGTGGGTTAACTTAT
259 CACATTATGCCTCTTCGACCGGCTCAGCGCCCGGACGCTCATTCCATGGGTTAACTTAT
* *
16598705 GCATACAGATTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACAGATTTCATTCCCAGTCTAAAATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGATA
* * * * * *
16598770 GCACATAGGGGGGACCAGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
66 GCACACAGGCGGGACCAGGCCGATCCCCGGCTTACACATTCTGCCTCTCCAGTCGGCTGAGCACC
* * *
16598835 CGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16598891 ATACGGGGTT
Statistics
Matches: 416, Mismatches: 82, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
316 1 0.00
317 409 0.98
318 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACAGATTTCATTCCCAGTCTAAAATCAGACCAGACCGAGAGTTGCGGCAGCAGGATCGATA
GCACACAGGCGGGACCAGGCCGATCCCCGGCTTACACATTCTGCCTCTCCAGTCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCAGA
ACCAAGAGTTATGGCAGCGAGACTGGCAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTGCA
CATTATGCCTCTTCGACCGGCTCAGCGCCCGGACGCTCATTCCATGGGTTAACTTAT
Found at i:16598867 original size:158 final size:157
Alignment explanation
Indices: 16598071--16598888 Score: 596
Period size: 158 Copynumber: 5.2 Consensus size: 157
16598061 CCCAGTCTAA
* * * * *
16598071 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCAGACTGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * ** * *
16598135 AGCACGCAGGAGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCACTCCGACCGATTGTGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
16598200 CCGCACGTTCGTTCCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * ** *
16598229 GCATAGGGAGTTCGTTCCATGTCTAAGCCCCAG--CTGAACCGAGGGTTATGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAA-CATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATC-G
** * * *
16598291 GCAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTTCGACCGGCTCAG
63 GCAGCACGCAG-GGGGGACCGGGCCGATCC-CCGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * * * * *
16598356 TGCCCGGATGCTCGTTCCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * * *
16598388 GCATGCGGATTTCATT-CGTAGTCTAAGATCAGATCGGACCGAGAGTTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCAT-GTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * ** *
16598452 AGCACGCAGGCGGGATCGGGCTGATCCCCGGCTTACACATTTTGTCTCTCCGGTCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
*
16598517 TCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * * * *
16598546 GCATAGGGAGTTCATTTCATGTCTAAGCCCCA-ACCAGACCAAGAGTTGTGGCTGC-GAGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAA-CATCAGACCAGACCGAGGGTTGCGGCAGCAG-GATC-G
** * * * * * *
16598608 GCAGCACAAAAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGTTCAG
63 GCAGCAC-GCAGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * * ** *
16598673 CGCCCGTACGCTCATTTCGTGGGTTAACTTAT
126 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * **
16598705 GCATACAGATTTCATTCCCA-GTCTAAAATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * *
16598769 AGCACATAGGGGGGACCAGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCC-AGTCGGCTGAGCG
65 AGCACGCAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTCCGA-CCGGCTGAGCG
* *
16598833 CCCGCACGCTCGTTTCGTGGGTTGGTTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
16598863 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16598889 GCATACGGGG
Statistics
Matches: 496, Mismatches: 138, Indels: 52
0.72 0.20 0.08
Matches are distributed among these distances:
157 13 0.03
158 252 0.51
159 222 0.45
160 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16598901 original size:26 final size:26
Alignment explanation
Indices: 16598863--16598915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16598853 GTTGGTTTAG
16598863 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16598889 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16598915 G
1 G
16598916 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16600296 original size:26 final size:26
Alignment explanation
Indices: 16600260--16600312 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16600250 TTTGGCTTAG
16600260 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16600286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16600312 G
1 G
16600313 ATTTTGAGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16602572 original size:26 final size:26
Alignment explanation
Indices: 16602536--16602588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16602526 GTTGAGTTAG
16602536 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16602562 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16602588 G
1 G
16602589 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16603340 original size:898 final size:898
Alignment explanation
Indices: 16601620--16603527 Score: 3636
Period size: 898 Copynumber: 2.1 Consensus size: 898
16601610 CGTACACTTA
* * * *
16601620 TTTCATGGGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTAAGCATACGGAGTTCATTCCCGA
1 TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGG
*
16601685 TCTAAGATCGGATCAGATCGAGGGTTGCGACAGTTGGATCGACAGCACGCAGGGGGGATCGAGTC
66 TCTAAGATCGGATCAGATCGAGGGTTGCGACAGTTGGATCGACAGCACGCAGGGGGGACCGAGTC
16601750 GATATTCGGCTTGCGTATTCTACCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTCCGTGGGTT
131 GATATTCGGCTTGCGTATTCTACCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTCCGTGGGTT
16601815 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAACGGG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAACGGG
16601880 ACCGATAGCACGCAAAGAGGGACCAGGTCAATCCTCGGCTTACGCATTATGCCTCTTCGACCGGT
261 ACCGATAGCACGCAAAGAGGGACCAGGTCAATCCTCGGCTTACGCATTATGCCTCTTCGACCGGT
16601945 TCAATGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
326 TCAATGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
16602010 CAAACCAGACCGATGGTTGCGGTAACAGGATCGACAGCACGATGGGGGGGACTGGGCCGATCCCC
391 CAAACCAGACCGATGGTTGCGGTAACAGGATCGACAGCACGATGGGGGGGACTGGGCCGATCCCC
16602075 AACTTACGCATTATGCCTCTCCGGTCGACTGAGCACCTGCACACTCGTTTTATGGGTTGGCTAGG
456 AACTTACGCATTATGCCTCTCCGGTCGACTGAGCACCTGCACACTCGTTTTATGGGTTGGCTAGG
16602140 AATACTGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATG
521 AATACTGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATG
16602205 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTCACCCAAGGCAGCACGCAGGG
586 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTCACCCAAGGCAGCACGCAGGG
16602270 GGGATCGGGCCGATTCTCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACACTCG
651 GGGATCGGGCCGATTCTCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACACTCG
16602335 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
716 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
* *
16602400 GTGGCAGTAGGGTCGACAGCGGGATCGGTAGCACGTAGAGGGAGATCGGGCTGATCTTCAGCTTG
781 ATGGCAGTAGGGTCGACAGCGGGATCGGTAGCACGCAGAGGGAGATCGGGCTGATCTTCAGCTTG
*
16602465 CGCATTATGCCTCTCTGATTTGCCTGTCCGATCGTTGAGCACTCGCACGCTCG
846 CACATTATGCCTCTCTGATTTGCCTGTCCGATCGTTGAGCACTCGCACGCTCG
16602518 TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGG
1 TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGG
* *
16602583 TCTAAGATCGGATTAGACCGAGGGTTGCGACAGTTGGATCGACAGCACGCAGGGGGGACCGAGTC
66 TCTAAGATCGGATCAGATCGAGGGTTGCGACAGTTGGATCGACAGCACGCAGGGGGGACCGAGTC
*
16602648 GATTTTCGGCTTGCGTATTCTACCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTCCGTGGGTT
131 GATATTCGGCTTGCGTATTCTACCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTCCGTGGGTT
16602713 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAACGGG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAACGGG
16602778 ACCGATAGCACGCAAAGAGGGACCAGGTCAATCCTCGGCTTACGCATTATGCCTCTTCGACCGGT
261 ACCGATAGCACGCAAAGAGGGACCAGGTCAATCCTCGGCTTACGCATTATGCCTCTTCGACCGGT
*
16602843 TCAATGCCCGTACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
326 TCAATGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
*
16602908 CAAACCAGACCTATGGTTGCGGTAACAGGATCGACAGCACGATGGGGGGGACTGGGCCGATCCCC
391 CAAACCAGACCGATGGTTGCGGTAACAGGATCGACAGCACGATGGGGGGGACTGGGCCGATCCCC
16602973 AACTTACGCATTATGCCTCTCCGGTCGACTGAGCACCTGCACACTCGTTTTATGGGTTGGCTAGG
456 AACTTACGCATTATGCCTCTCCGGTCGACTGAGCACCTGCACACTCGTTTTATGGGTTGGCTAGG
16603038 AATACTGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATG
521 AATACTGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATG
16603103 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTCACCCAAGGCAGCACGCAGGG
586 GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTCACCCAAGGCAGCACGCAGGG
16603168 GGGATCGGGCCGATTCTCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACACTCG
651 GGGATCGGGCCGATTCTCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACACTCG
16603233 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
716 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
16603298 ATGGCAGTAGGGTCGACAGCGGGATCGGTAGCACGCAGAGGGAGATCGGGCTGATCTTCAGCTTG
781 ATGGCAGTAGGGTCGACAGCGGGATCGGTAGCACGCAGAGGGAGATCGGGCTGATCTTCAGCTTG
16603363 CACATTATGCCTCTCTGATTTGCCTGTCCGATCGTTGAGCACTCGCACGCTCG
846 CACATTATGCCTCTCTGATTTGCCTGTCCGATCGTTGAGCACTCGCACGCTCG
*
16603416 TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGG
* * * * **
16603481 TCTAAGATCAGACCGGATCGAGGTTTGCGACAGCAGGATCGACAGCA
66 TCTAAGATCGGATCAGATCGAGGGTTGCGACAGTTGGATCGACAGCA
16603528 GGATCGACAG
Statistics
Matches: 988, Mismatches: 22, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
898 988 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (898 bp):
TTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGG
TCTAAGATCGGATCAGATCGAGGGTTGCGACAGTTGGATCGACAGCACGCAGGGGGGACCGAGTC
GATATTCGGCTTGCGTATTCTACCTCTCTGGCCGGCTGAGTGCCCGCATGCCCATTCCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAACGGG
ACCGATAGCACGCAAAGAGGGACCAGGTCAATCCTCGGCTTACGCATTATGCCTCTTCGACCGGT
TCAATGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
CAAACCAGACCGATGGTTGCGGTAACAGGATCGACAGCACGATGGGGGGGACTGGGCCGATCCCC
AACTTACGCATTATGCCTCTCCGGTCGACTGAGCACCTGCACACTCGTTTTATGGGTTGGCTAGG
AATACTGAGTTCATTCCATGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATG
GTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTCACCCAAGGCAGCACGCAGGG
GGGATCGGGCCGATTCTCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACACTCG
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
ATGGCAGTAGGGTCGACAGCGGGATCGGTAGCACGCAGAGGGAGATCGGGCTGATCTTCAGCTTG
CACATTATGCCTCTCTGATTTGCCTGTCCGATCGTTGAGCACTCGCACGCTCG
Found at i:16603470 original size:26 final size:26
Alignment explanation
Indices: 16603434--16603486 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16603424 GTTGAGTTAG
16603434 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16603460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16603486 G
1 G
16603487 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16603525 original size:12 final size:12
Alignment explanation
Indices: 16603508--16603539 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
16603498 TCGAGGTTTG
16603508 CGACAGCAGGAT
1 CGACAGCAGGAT
16603520 CGACAGCAGGAT
1 CGACAGCAGGAT
16603532 CGACAGCA
1 CGACAGCA
16603540 CGCAGGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.06
Consensus pattern (12 bp):
CGACAGCAGGAT
Found at i:16605018 original size:9 final size:9
Alignment explanation
Indices: 16605004--16605028 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
16604994 AAAGGTCTTC
16605004 AGCACCTTT
1 AGCACCTTT
16605013 AGCACCTTT
1 AGCACCTTT
16605022 AGCACCT
1 AGCACCT
16605029 CCAAGGGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (9 bp):
AGCACCTTT
Found at i:16607679 original size:26 final size:26
Alignment explanation
Indices: 16607643--16607695 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16607633 GTTGACTTAG
16607643 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16607669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16607695 G
1 G
16607696 ATAGAATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16608011 original size:26 final size:26
Alignment explanation
Indices: 16607975--16608024 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16607965 GGCTTAGGCG
16607975 TACAGAGTTCATT-CCATGTCTAAGCA
1 TACAGAGTTCATTCCCA-GTCTAAGCA
*
16608001 TACAGATTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
16608025 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:16609710 original size:26 final size:26
Alignment explanation
Indices: 16609681--16609758 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
16609671 TGACTTAGGC
*
16609681 ATACGGAGTTCATCCCCAGTTTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
16609707 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGA
* * * *
16609733 ATACGAAGCTCATTCCCAGCCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
16609759 TCGGATTGGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:16610306 original size:26 final size:26
Alignment explanation
Indices: 16610270--16610322 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16610260 GTTGACTTAG
16610270 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16610296 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16610322 G
1 G
16610323 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16610804 original size:26 final size:26
Alignment explanation
Indices: 16610774--16610826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16610764 GTTGACTTAG
16610774 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16610800 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16610826 G
1 G
16610827 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16611299 original size:26 final size:26
Alignment explanation
Indices: 16611269--16611321 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16611259 GTTGGCTTAG
* *
16611269 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
*
16611295 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
16611321 G
1 G
16611322 ATCCGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:16611514 original size:26 final size:26
Alignment explanation
Indices: 16611478--16611530 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16611468 GTTGACTTAG
*
16611478 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16611504 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16611530 G
1 G
16611531 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16611866 original size:159 final size:157
Alignment explanation
Indices: 16611504--16612006 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 157
16611494 CCTAGTCTAA
* * *
16611504 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGAACTGAGGGTTGCAGCAGTAGGATCCAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAAACCGAAC-GAGGGTTGCGGCAGCAGGATCCAC
** * * * * *
16611568 AGCACACAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTTTGGCTCTCCGGGCGGTTGAGTGC
64 AGCACGTAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTAAGTGC
** *
16611633 CC-ACACACCCGTTTCGTGGGTTGGCTTAG
129 CCGA-ATGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * * * * *
16611662 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCAAACC-GAACGAGGGTTGCGGCAGCAGGATCCACA
* * * * *
16611727 GCACGTAGAGGGGG-TCTAGGCCAATCCCTGGCTTACGCATTATGCCTTTCCGGTCGGCTCAGTG
65 GCACGTA-AGGGGGACCGA-GCCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTAAGTG
* * *
16611791 CCCGAATGCTCATTTTGTGGGTTGACTTAG
128 CCCGAATGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
16611821 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGAATCAAGGGTTGCGACAGCAAGATCTAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAAACCGAA-CGAGGGTTGCGGCAGCAGGATCCAC
* * * * * * *
16611885 AGCACGTAAGGGGGGACCGAGTCGATCCCCGACTTACACATTCTACCTCTCCGGTCGGCTAAGCG
64 AGCACGTAA-GGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTAAGTG
* *
16611950 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
128 CCCGAATGCTCGTTTCGTGGGTTGGCTTAG
*
16611980 GCATACAGAGTTTATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
16612007 CATGTGGAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 58 0.21
159 207 0.76
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAAACCGAACGAGGGTTGCGGCAGCAGGATCCACAG
CACGTAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTAAGTGCCC
GAATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16612215 original size:711 final size:702
Alignment explanation
Indices: 16610748--16612216 Score: 1563
Period size: 704 Copynumber: 2.1 Consensus size: 702
16610738 TGAGTGCTCG
* *
16610748 CACGCTCATTTCA-TGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGT
1 CACGCTCATTT-AGTGGGTAGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGT
* * * * * *
16610811 TTATTCCCAGTCTAAGATCAAACCGGACTGAAGATTGTGATAGCTGGATCGACAGCACACAGGGG
64 TCATTCCCAGTCTAAGATCAAACCGAACTGAAGATTGAGACAGCTGGATCCACAGCACACAAGGG
* * * * ** *
16610876 GGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCACTCCGACTGGCTGAGCGCCTGCACACCTGT
129 GGACCGAGCCGATCCCCGGCTTACGCATTCTGCCACTCCGACTGGCTGAGCGCCCACACACCCGT
* * * *
16610941 TTTGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCTCAGTCGGACCAAGGGTTG
194 TTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTG
* * ** * *
16611006 TGGCAGCGGGACAAACAGCATGCAGAAAGGATCGAGCCGATCACCGGCTTGTGTATTTTACCTCT
259 TGGCAGCGGGACAAACAGCACGCAGAAAGGATCGAGCCAATCACCGGCTTACGCATTATACCTCT
*
16611071 CCGATCGGCTCAACGCCTGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCA
324 CCGATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCA
* * * **
16611136 GTCTAAGATCAGACTGAGGATTACGACAGCAGGATCGACAGCATACAGGGGGGATTGGGCCAGTC
389 GTCTAAGATCAGAATAAGGATTACGACAGCAAGATCGACAGCATACAGGGGGGACCGGGCCAGTC
* * ** * *
16611201 CCTGGCTTACTTATTCTGCCTCTCCGATAGACTGAGCACCCGCACGCTAGTTTCATGGGTTGGCT
454 CCCGACTTACACATTCTACCTCTCCGATAGACTAAGCACCCGCACGCTAGTTTCATGGGTTGGCT
*
16611266 TAGGCATATAGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCCGACCG
519 TAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCCGACCG
* * * **
16611331 GATCGAGGATTACAGCAGTAGGACCAGCAGTAGGATCGACAGCAAATAGGGGGGACCAGGTCGAT
584 GATCGAGGATTACAGCAGCAGGACCAGCAGCAGGATCGACAGCAAACAGGGGGGACCAACTCGAT
* * * * * *
16611396 CACTGGCTTGTGCATTCCGCCTCTCTGGCAGGCCTCTTCGGTCAATTGAGCATCCA
649 CACCGACGTGCGCATTCCGCCTCTCTGCCAGGCCTCTTC-G-CAACTGAGCATCCA
* * * * *
16611452 CATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTA-TCCCTAGTCTAAGCATACGGAGTT
1 CACGCTCATTTAGTGGGTAGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTT
* *
16611516 CATTCCCAGTCTAAGATCAAACCGAACTGAGGGTTGCAG-CAG-TAGGATCCACAGCACACAAGG
65 CATTCCCAGTCTAAGATCAAACCGAACTGAAGATTG-AGACAGCT-GGATCCACAGCACACAAGG
* * * * * * *
16611579 GGGACCGAGCCGATCCCTGGCTTACGCATTTTGGCTCTCCGGGC-GGTTGAGTGCCCACACACCC
128 GGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCACTCC-GACTGGCTGAGCGCCCACACACCC
* *
16611643 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
192 GTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGT
* * * ** * * *
16611708 TGTGGTAGCGGGATC-GACAGCACGTAGAGGGGGTCTAGGCCAATC-CCTGGCTTACGCATTATG
257 TGTGGCAGCGGGA-CAAACAGCACGCAGAAAGGATCGA-GCCAATCACC-GGCTTACGCATTATA
* * ** * * *
16611771 CCTTTCCGGTCGGCTCAGTGCCCGAATGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCAT
319 CCTCTCCGATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
* * *
16611836 TCCCAGTCTAAGATCGAACCGAATCAAGGGTTGCGACAGCAAGATCTACAGCACGTA-AGGGGGG
384 TCCCAGTCTAAGATC--A--GAAT-AAGGATTACGACAGCAAGATCGACAGCA--TACAGGGGGG
* * * * * * * *
16611900 ACCGAGTC-GATCCCCGACTTACACATTCTACCTCTCCGGTCGGCTAAGCGCCCGCATGCTCGTT
442 ACCGGGCCAG-TCCCCGACTTACACATTCTACCTCTCCGATAGACTAAGCACCCGCACGCTAGTT
* ** *
16611964 TCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATGTGGAGTTCATTCCCAGTC
506 TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTC
** * * * * * *
16612029 TAAGATTGGACCGGATTGA-GAGTTGCGGTAGCAGGACCAGCAGCAGGATCGGCAGCAAGCAGGG
571 TAAGATCCGACCGGATCGAGGA-TTACAGCAGCAGGACCAGCAGCAGGATCGACAGCAAACAGGG
* * *
16612093 GGGACACAACT-GATCCCCGACGTGCGTATTCTGCCTCT-TCGACCA-GCCT-TTC-CAACTG-G
635 GGGAC-CAACTCGATCACCGACGTGCGCATTCCGCCTCTCT-G-CCAGGCCTCTTCGCAACTGAG
16612152 CTAAGTGCC-
697 C--A-T-CCA
* *
16612161 CGTACGCTCGTTTAGTGGGTCAG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 C--ACGCTCATTTAGTGGGT-AGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16612217 CCCAGTCGTA
Statistics
Matches: 625, Mismatches: 111, Indels: 51
0.79 0.14 0.06
Matches are distributed among these distances:
702 2 0.00
703 1 0.00
704 240 0.38
705 92 0.15
706 2 0.00
707 6 0.01
708 1 0.00
709 5 0.01
710 32 0.05
711 232 0.37
712 12 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (702 bp):
CACGCTCATTTAGTGGGTAGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAAACCGAACTGAAGATTGAGACAGCTGGATCCACAGCACACAAGGGGG
ACCGAGCCGATCCCCGGCTTACGCATTCTGCCACTCCGACTGGCTGAGCGCCCACACACCCGTTT
CGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTG
GCAGCGGGACAAACAGCACGCAGAAAGGATCGAGCCAATCACCGGCTTACGCATTATACCTCTCC
GATCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGATCAGAATAAGGATTACGACAGCAAGATCGACAGCATACAGGGGGGACCGGGCCAGTCCC
CGACTTACACATTCTACCTCTCCGATAGACTAAGCACCCGCACGCTAGTTTCATGGGTTGGCTTA
GGCATACAGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCCGACCGGA
TCGAGGATTACAGCAGCAGGACCAGCAGCAGGATCGACAGCAAACAGGGGGGACCAACTCGATCA
CCGACGTGCGCATTCCGCCTCTCTGCCAGGCCTCTTCGCAACTGAGCATCCA
Found at i:16612506 original size:26 final size:26
Alignment explanation
Indices: 16612476--16612528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16612466 GATGGCTTAG
*
16612476 GCATACGGAGTTCATT-CCATCTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
16612502 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
16612528 G
1 G
16612529 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:16613588 original size:159 final size:158
Alignment explanation
Indices: 16613234--16613589 Score: 337
Period size: 159 Copynumber: 2.2 Consensus size: 158
16613224 AAGCAAATGG
* * * * * ** *
16613234 AGTTCATTCCCAGTCTACGATCGGATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCAGGACCGACAACACGCAG
* * * *
16613299 GGGAGACCGGGTCAATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCTGCACTCT
66 GGGAGACCGCGCCAATCCCTGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGCCTGCACTCT
* * * * *
16613364 CGTTTCATGGGTTGGCTTAGGCATAGGG
131 CATTTAATGGGTTGGCTTAGACATACGA
** * * * * *
16613392 AGTTCATT-CCATGTCTAAGCCCCAGTTGA-ACCTAGGGTTATGGCAGCAGGACCGACAACACGC
1 AGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCAAGGGTTACGGCAGCAGGACCGACAACACGC
* * * * *
16613455 AAAGGGG-GACCGCGCCAATCCAC-GGCTTGCGCATTATGCCTCTCCGG-CTGGCTCTGTGCTTG
64 --AGGGGAGACCGCGCCAATCC-CTGACTTGCGCATTATGCCTCTCCGGTC-AGCTCAGCGCCTG
16613517 CA-TGCTCATTTAATGGGTTGGCTTAGACATACGA
125 CACT-CTCATTTAATGGGTTGGCTTAGACATACGA
*
16613551 AGTTCATTCCCAGTCTAAGATGGGATCAGACCAAGGGTT
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT
16613590 GTGGTAGTAG
Statistics
Matches: 154, Mismatches: 35, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.02
158 46 0.30
159 96 0.62
160 9 0.06
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGCAGCAGGACCGACAACACGCAG
GGGAGACCGCGCCAATCCCTGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGCCTGCACTCT
CATTTAATGGGTTGGCTTAGACATACGA
Found at i:16613732 original size:26 final size:26
Alignment explanation
Indices: 16613702--16613754 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16613692 GTTAGCTTAG
*
16613702 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGAAGTTCATTCCCA-GTCTAA
*
16613728 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAGGAAGTTCATTCCCAGTCTAA
16613754 G
1 G
16613755 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAGGAAGTTCATTCCCAGTCTAA
Found at i:16613800 original size:26 final size:26
Alignment explanation
Indices: 16613764--16613816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16613754 GATTGGATCG
16613764 GACTGAGGGTTACGGTAGCAGGACCA
1 GACTGAGGGTTACGGTAGCAGGACCA
*
16613790 GACTGAGGGTTGCGGTAGCAGGACCA
1 GACTGAGGGTTACGGTAGCAGGACCA
16613816 G
1 G
16613817 CAGCAAGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.42, T:0.15
Consensus pattern (26 bp):
GACTGAGGGTTACGGTAGCAGGACCA
Found at i:16614138 original size:26 final size:26
Alignment explanation
Indices: 16614109--16614161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16614099 GTTGACTTAG
16614109 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16614135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16614161 G
1 G
16614162 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16614606 original size:158 final size:159
Alignment explanation
Indices: 16614187--16614635 Score: 405
Period size: 158 Copynumber: 2.9 Consensus size: 159
16614177 GGGGTATGGT
* * * * * *
16614187 AGCAGGATCGATAGCAC-TA-AG-GGGACCGAGCTGATCCCCTGCTTGCGCATTCTGCCTCT-TC
1 AGCAGGATCGACAGCACGCAGAGAGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCT-
* * * * * * * *
16614248 GGCTGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGT
65 GGTTGGCTGAGCACCCGAAAGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGT
* ** * *
16614313 CTAAGCCCCAGCCGGACCGAGGGTTGTGGC
130 CTAAGCACCAGCCAAACCGAAGGTTGTGAC
* * * * * * *
16614343 AGCAGGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCATTATGCCTATCCG
1 AGCAGGATCGACAGCACGCAGAGAGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTG
* * * * *
16614408 GTCGGCTTAGCACCCGAAAGCTCATTTCATGGG-TGACTTAGGCATACAAAGTTTATTCCCA-GT
66 GTTGGCTGAGCACCCGAAAGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATT-CCATGT
*
16614471 CTAAG-ATCAGACCAAACCGAAGGTTGTGAC
130 CTAAGCACCAG-CCAAACCGAAGGTTGTGAC
* * * *
16614501 AGCAGGATCGACAGCATGTA-AGAGGGA-TCGAGCC-AGTCTTCGGCTTGCACATTCTGCCTCTC
1 AGCAGGATCGACAGCACGCAGAGAGGGACT-GAGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTC
* * * * **
16614563 TGGTTGACTGAGCACCCGTAATCTCATTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATG
64 TGGTTGGCTGAGCACCCGAAAGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
16614628 TCTAAGCA
129 TCTAAGCA
16614636 TACGGAGTTC
Statistics
Matches: 229, Mismatches: 53, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
156 18 0.08
157 65 0.28
158 88 0.38
159 58 0.25
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
AGCAGGATCGACAGCACGCAGAGAGGGACTGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTG
GTTGGCTGAGCACCCGAAAGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTC
TAAGCACCAGCCAAACCGAAGGTTGTGAC
Found at i:16614644 original size:26 final size:26
Alignment explanation
Indices: 16614608--16614659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16614598 TTGGCTTAGC
16614608 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
16614634 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
16614660 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:16614779 original size:184 final size:182
Alignment explanation
Indices: 16614457--16615001 Score: 524
Period size: 184 Copynumber: 3.0 Consensus size: 182
16614447 AGGCATACAA
* * * * * * * *
16614457 AGTTTATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGTGACAGCAGGATCGACAGCATGTAA
1 AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAG
* * * * * * *
16614522 GAGGGATCGAGCC-AGTCTTCGGCTTGCACATTCTGCCTCTCTGGTTGACTGAGCACCCGTA-AT
65 GGGGGATCGAGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC--ACAT
* * * *
16614585 CTCATTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCATACGG
127 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACGG
*
16614641 AGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAG
1 AGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAG
** **
16614706 GGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAATGCCCACATGCT
65 GGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACAT-CT
* * *
16614771 CGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCAGACGG
129 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACGG
* * * * * * *
16614825 AGTTCATTCACAGTCTAAGATC-GAATCGGACCGAGGGTTACGGCAGCAGGAT-TAGTAATACGC
1 AGTTCATTC-CAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCAGGATCGA-CAACACGC
* * ** * * * * *
16614888 AGGGAGGACCCTGCCGTTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATC
63 AGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACAT-
* * * ** *
16614953 CCCGTTCCATGGGTTGTTTTAGGCATAGGGAGTT-ATTCCATGTCTAAGC
127 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16615002 CCCAGCCGGA
Statistics
Matches: 296, Mismatches: 58, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
182 1 0.00
183 19 0.06
184 274 0.93
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (182 bp):
AGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGG
GGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACGG
Found at i:16615341 original size:26 final size:26
Alignment explanation
Indices: 16615293--16615344 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16615283 TTGGCTTCGA
*
16615293 CATACGGAGTTCATTCGATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
16615319 CATATGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
16615345 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:16615715 original size:514 final size:498
Alignment explanation
Indices: 16614633--16615864 Score: 1314
Period size: 514 Copynumber: 2.4 Consensus size: 498
16614623 CCATGTCTAA
* * *
16614633 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* **
16614698 ACACGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAATGCC
66 GCACGCAGGGGGGATCG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTGAGCGCC
* * * *
16614763 CACATGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCAGACGGAGT
129 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACGGAGT
* * * * * * ** *
16614828 TCATTCACAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATTAGTAATACGCAGGGA
193 TCATTCCCAGTCTAAGATTGGACCGGACCAAAGGTTACGGCAGCAGGAGCAGTAATACGAAGGGA
* * * *
16614893 GGACCCTGCCGTTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATCCCCGT
258 GGACCCGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATCCCCGT
** * *
16614958 TCCATGGGTTGTTTTAGGCATAGGGAGTTATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGT
323 TCCATGGGTTGGCTTAGGCATACGGAGTTATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGT
** *** * * *
16615023 GGCAGTGGGATGGGCAACACGCAGAGGGGGACTAGGCCGATCTCCGGCTTGCGCATTATGCCTCT
388 GGCAGTAAGACCAGCAACACGCAGAGAGGGACTAAGCCGATCTCCGGCTTGCGCATTATGCCGCT
* ** * *
16615088 CCGACCGGCTCAGTTCCCGAATGCTCATTTTCATGGGTTGACTTAG
453 CCGACCGACTCAGCGCCCGAATGCTCAGTTTCATGGGTTGACATAG
* * * **
16615134 GCTTGA-GGAGTTCATTCCCAGTCTAAGATTAGACCGGACAGAACGTTGCGGTAGCAGGATCGAC
1 GCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
16615198 AGCACGCAGGGGGGATCAGGTC-AGTCCTCGGCTTACGCATTCTGCCTCTCCAATCGGCTGAGCG
65 AGCACGCAGGGGGGATC-GGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTGAGCG
* * * * * * *
16615262 CCCGTACGCTCGTTTCGTGGGTTGGCTTCGACATACGGAGTTCATTCGATGTCTAAGCATATGGA
127 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACGGA
* *
16615327 GTTCATTCCCAGTCTAAGATTGGACCGGACCAAAGGTTGCGGCAGTAGGACCAGCAGTAAGATCG
191 GTTCATTCCCAGTCTAAGATTGGACCGGACCAAAGGTTACGGCAGCAGG---AGCAGT-A-AT--
* ** * *
16615392 GCAGCACGTAAGGGGGGACTGGGTCGGTCCCC-AGCTTACGCATTCTGCCTCTCTGGTCGGCTGA
249 -----ACG-AAGGGAGGACCCGGCCGGTCCCCGA-CTTACGCATTCTGCCTCTCCGGTCGGCTGA
* * *
16615456 GCGCTCGCA-CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
307 GCGCCCGCATC-CCCGTTCCATGGGTTGGCTTAGGCATACGGAGTT-ATTCCATGTCTAAGCCCC
*
16615520 AGACC-GA-CTGAAGGTTGTGGCAGTAAGACCAGCAACACGCAGAGAGGGA-TCAAGTCGATC-C
370 AG-CCGGATC-GAAGGTTGTGGCAGTAAGACCAGCAACACGCAGAGAGGGACT-AAGCCGATCTC
* * * ** *
16615581 TTGGCTTGTGCATTATGCCGCTTCGGTCGACTCAGCGCCCGAATGCTC-GTTTCGTGGGTTGACA
432 -CGGCTTGCGCATTATGCCGCTCCGACCGACTCAGCGCCCGAATGCTCAGTTTCATGGGTTGACA
16615645 TAG
496 TAG
* * * *
16615648 GCATACAGAGTTCATTCCCAATCTATGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
16615713 GCACACAAGAGGGACCGGGCCGATCCT-GGACTTGTGCATTCAGCCTCTCCAGCTGGCTGAGCAC
66 GCACGCAGGGGGGATC-GGCCGATCCTCGG-CTTGCGCATTCTGCCTCTCCA-CCGGCTGAGCGC
**
16615777 CCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
128 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAG
* *
16615842 TTCATCCCCAATCTAAGATTGGA
192 TTCATTCCCAGTCTAAGATTGGA
16615865 TTAGATCGAG
Statistics
Matches: 597, Mismatches: 105, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
500 2 0.00
501 200 0.34
502 2 0.00
504 4 0.01
505 1 0.00
506 2 0.00
513 9 0.02
514 272 0.46
515 103 0.17
516 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (498 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCACCGGCTGAGCGCCCG
CATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATTGGACCGGACCAAAGGTTACGGCAGCAGGAGCAGTAATACGAAGGGAGGA
CCCGGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATCCCCGTTCC
ATGGGTTGGCTTAGGCATACGGAGTTATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGC
AGTAAGACCAGCAACACGCAGAGAGGGACTAAGCCGATCTCCGGCTTGCGCATTATGCCGCTCCG
ACCGACTCAGCGCCCGAATGCTCAGTTTCATGGGTTGACATAG
Found at i:16615835 original size:26 final size:26
Alignment explanation
Indices: 16615806--16615858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16615796 GTTGGCTTAG
*
16615806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16615832 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16615858 G
1 G
16615859 ATTGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16615947 original size:26 final size:26
Alignment explanation
Indices: 16615918--16615983 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
16615908 GATCGGGCCG
16615918 ATCCCCAG-CTTAAGCATACAGAGTTC
1 ATCCCCAGTC-TAAGCATACAGAGTTC
*
16615944 ATCCCCAGTCTAAGCATACGGAGTTC
1 ATCCCCAGTCTAAGCATACAGAGTTC
*
16615970 ATTCCCAGTCTAAG
1 ATCCCCAGTCTAAG
16615984 ATTGGATTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (26 bp):
ATCCCCAGTCTAAGCATACAGAGTTC
Found at i:16616022 original size:125 final size:126
Alignment explanation
Indices: 16615800--16616054 Score: 422
Period size: 125 Copynumber: 2.0 Consensus size: 126
16615790 TTATGGGTTG
* *
16615800 GCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATTGGA
1 GCTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATTGGA
* * *
16615865 TTAGATCGAGGGTTGTAGTAGCAGGATCGGTAGCACGCA-GGGGGATCGGGCCGATCCCCA
66 TTAGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCCCA
* *
16615925 GCTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 GCTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATTGGA
* *
16615990 TTAGATTGAGGGTTGTAGCAGTAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCCCA
66 TTAGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCCCA
16616051 GCTT
1 GCTT
16616055 GTGCATTCTG
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
125 96 0.80
126 24 0.20
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (126 bp):
GCTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATTGGA
TTAGATCGAGGGTTGTAGCAGCAGGATCGGTAGCACACAGGGGGGACCGGGCCGATCCCCA
Found at i:16616157 original size:26 final size:26
Alignment explanation
Indices: 16616128--16616180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16616118 GTTGACTTAT
16616128 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
16616154 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16616180 G
1 G
16616181 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16617484 original size:159 final size:157
Alignment explanation
Indices: 16617131--16617509 Score: 416
Period size: 159 Copynumber: 2.4 Consensus size: 157
16617121 AAGCATACAA
* *
16617131 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGATAACAGGATCGACAGCACGCAA
1 AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAA
* * * * **
16617196 GGATGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCTCACACC
65 GGAGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACACC
* *
16617261 CGTTTCATGGGTTGGCTTAGGCATAGGG
130 CATTTCATGGGTTGACTTAGGCATAGGG
* ** ** * * * *
16617289 AGTTCATTCCATGTTTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCATGCAG
1 AGTTCATTCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCA-
* * * * ** **
16617354 AGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGATTGGCTCAGTGCCCGAATGC
64 AGGAGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACAC
* * *
16617419 TCATTTCGTGGGTTGACTTAGGCATATGG
129 CCATTTCATGGGTTGACTTAGGCATAGGG
* * * *
16617448 AGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTGACAGTAGGATCGACAGCACG
1 AGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACG
16617510 TAGGGGGGAT
Statistics
Matches: 175, Mismatches: 43, Indels: 5
0.78 0.19 0.02
Matches are distributed among these distances:
157 3 0.02
158 49 0.28
159 122 0.70
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAAG
GAGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACACCC
ATTTCATGGGTTGACTTAGGCATAGGG
Found at i:16618357 original size:26 final size:26
Alignment explanation
Indices: 16618307--16618359 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16618297 GTTGGTTTAG
*
16618307 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16618333 GCATAC-GCAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
16618359 G
1 G
16618360 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16619206 original size:26 final size:26
Alignment explanation
Indices: 16619172--16619222 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619162 TTGGCTTAGG
16619172 CATAAGGAGTTCATTCC-ATGTCTAAC
1 CATAAGGAGTTCATTCCTA-GTCTAAC
*
16619198 CATACGGAGTTCATTCCTAGTCTAA
1 CATAAGGAGTTCATTCCTAGTCTAA
16619223 GATTAAACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAC
Found at i:16619420 original size:25 final size:26
Alignment explanation
Indices: 16619371--16619421 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619361 TTGACTTAGT
*
16619371 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
16619397 CATACGGAGTTCAT-CCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
16619422 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:16621177 original size:26 final size:26
Alignment explanation
Indices: 16621137--16621187 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16621127 TGGCTTAGGT
16621137 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
*
16621163 ATACGGAGTTGATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16621188 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16621911 original size:196 final size:196
Alignment explanation
Indices: 16621566--16622071 Score: 674
Period size: 196 Copynumber: 2.6 Consensus size: 196
16621556 CGAGGGTTGC
* * * **
16621566 AGCAGCAGGATCGACAGCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTACCTCTC
1 AGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTC
* * * *
16621631 TGGCCGACTGAGTGCCCCCACACTCGTTTCGTGGGTTGGCTTAGCCATAAGAAGCTCATTCCATG
66 TGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGAAGATCATTCCATG
* * *
16621696 TCGAAGTATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAATAGGAC
131 TCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAACAGGAC
16621761 T
196 T
* *
16621762 AGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTC
1 AGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTC
* *
16621827 TGGCCGACTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACA-AAGATCATTCCAT
66 TGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGAAGATCATTCCAT
* * ** ** *
16621891 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCAGCAGCAGGA
130 GTCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAACAGGA
16621956 CT
195 CT
** * *
16621958 AGC-GACAGGATCGGTAGCACGTAGGGGGCATCGGGCCGATCTCCAGCTTGCGCATTCTACCTCT
1 AGCAG-CAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCT
* ** * * * *
16622022 CCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
65 CTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
16622072 TGGAGTTCAT
Statistics
Matches: 270, Mismatches: 38, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
195 1 0.00
196 268 0.99
197 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (196 bp):
AGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTC
TGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGAAGATCATTCCATG
TCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAACAGGAC
T
Found at i:16622158 original size:550 final size:537
Alignment explanation
Indices: 16620912--16622173 Score: 1288
Period size: 540 Copynumber: 2.3 Consensus size: 537
16620902 GAGAGGGACC
* * * * * * *
16620912 GACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAG
1 GACTTGCGCATTATACCTCTCCAGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* ** * * *
16620977 GCATACGAAGTTCATTCCCAATGTAAGATTGGACCAGACTGAGGGTT--ATGATAG-ATGGATCG
66 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCA-G-CAGCA-GGATCG
* ** * * * * * **
16621039 ATAGCACGTAGGGGGGACCAGGTC-AGTCCCCGGTTTGTGCATTCTGCCTCTCCAGCC-AGCTGA
128 ACAGCACACAGGGGGGACCAGGCCGA-TCCCTGGCTTGCGCATTCTACCTCTCTGGCCGA-CTGA
* * * ** * * * *
16621102 --GCACCCATAAGCTCGTTTCGTGGTTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCAT
191 GTGCCCCCA-CA-CTCGTTTCGTGGGTTGGCTTAGCCATAAGAAGCTCATTCCATGTCGAAGCAT
* * * * *
16621165 ACGGAGTTGATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAGACTAGCAGTAGG
254 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTACAATAG-AGACTAGCAGCAGG
* * * *
16621230 ATTGGCAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCC
318 ATCGACAGCACACAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-ATCGGCC
* * * * * ** *
16621295 TCTGCGATTAGTTGACTTAGGGTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
382 TCTGC-ATGAGTTGACTCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGATCATCCCCAGT
* **
16621360 CTAAGCAGATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGATAGCAAGATC
446 CTAAGCAGATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAAGATC
* *
16621425 GGTAGCACACAGGAGGGACTGATCCCC
511 GGTAGCACACAGGAGGGACCGATCCCA
* *
16621452 GACTTGCGCATTATACCTCTCCAGTCGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAG
1 GACTTGCGCATTATACCTCTCCAGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
16621517 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
66 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
** *
16621582 GCACGTAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCC
131 GCACACAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCC
*
16621647 CCCACACTCGTTTCGTGGGTTGGCTTAGCCATAAGAAGCTCATTCCATGTCGAAGTATACGGAGT
196 CCCACACTCGTTTCGTGGGTTGGCTTAGCCATAAGAAGCTCATTCCATGTCGAAGCATACGGAGT
16621712 TCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAATAG-GACTAGCAGCAGGATCGA
261 TCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTT--A-CAATAGAGACTAGCAGCAGGATCGA
*
16621776 CAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-C-T-GG-C-C-G-A
323 CAGCACACAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCATCGGCCTCTGCA
* * * *
16621834 CTGAG-TGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGATCAT-TCCATGTCTAA
388 -TGAGTTGACT-CACGCTCATTTCATGGGTTGACTTAGGCATACAAAGATCATCCCCA-GTCTAA
* **
16621897 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCAGCAGCAGGACTAGCG
450 GCAGATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-----A-C--GA-TAGC-
**
16621962 ACAGGATCGGTAGCACGTAGG-GGGCATCGGGCCGATCTCCA
505 A-A-GATCGGTAGCACACAGGAGGG-A-----CCGATC-CCA
* * * * *
16622003 G-CTTGCGCATTCTACCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
1 GACTTGCGCATTATACCTCTCCAGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * ** * *
16622067 GCATATGGAGTTCA-TCCACAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATCGAT
66 GCATACGAAGTTCATTCC-CAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
*
16622131 AGCACACAGGTGGGACC-GAGCCGATCCCTGGCTTGCGCATTCT
130 AGCACACAGGGGGGACCAG-GCCGATCCCTGGCTTGCGCATTCT
16622174 GCCTTTTCGA
Statistics
Matches: 606, Mismatches: 82, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
532 8 0.01
533 82 0.14
534 1 0.00
535 1 0.00
536 1 0.00
537 2 0.00
538 2 0.00
539 1 0.00
540 244 0.40
541 69 0.11
542 12 0.02
543 6 0.01
544 4 0.01
545 16 0.03
549 4 0.01
550 150 0.25
551 3 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (537 bp):
GACTTGCGCATTATACCTCTCCAGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACACAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCC
CCCACACTCGTTTCGTGGGTTGGCTTAGCCATAAGAAGCTCATTCCATGTCGAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTACAATAGAGACTAGCAGCAGGATCGACAG
CACACAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCATCGGCCTCTGCATGA
GTTGACTCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGATCATCCCCAGTCTAAGCAGAT
GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAAGATCGGTAGCACAC
AGGAGGGACCGATCCCA
Found at i:16623296 original size:26 final size:26
Alignment explanation
Indices: 16623249--16623298 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16623239 GGCTTAGGCG
* *
16623249 TACGGAGTTTATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATATCTAAGCA
16623275 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
16623299 ATCGGACCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCA
Found at i:16623765 original size:26 final size:26
Alignment explanation
Indices: 16623716--16623767 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16623706 TTGGCTTATC
* *
16623716 CATACGAAGTTCATTCCATGTCTAAG
1 CATACAAAGTTCATTCCATATCTAAG
16623742 CATACAAAGTTCATTCCCA-ATCTAAG
1 CATACAAAGTTCATT-CCATATCTAAG
16623768 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCATATCTAAG
Found at i:16624304 original size:158 final size:158
Alignment explanation
Indices: 16623803--16624409 Score: 586
Period size: 157 Copynumber: 3.8 Consensus size: 158
16623793 AGTAGGACTA
* * *
16623803 GCAGCAGGATC-AGCAGAACGCAAGGGGGGATCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTC
1 GCAGCAGGATCGA-CAGCACGC-AGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTC
* * * * *
16623866 TCTGGCCAGCTGAGCGCCCGCACACTCGTTTCGTGGTTTGACTTAGGCATACGGAGTGCATTCCC
63 TCCGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CC
* *
16623931 A-GTCTAAGATTC-GACCGGACTGAGGGTTGCG
127 ATGTCTAAGA-TCAGACCGGACCGAAGGTTGCG
* * * * * * * * *
16623962 GTAGCAGGATCAACAGCATGTAGGTGGGACCGGGCCGATCCTCGGCTTACGCATTTTGCCTCT-C
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
* * * * *
16624026 GGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
** *
16624091 CTAAGCCCCAG-CCGGACCG-AGGTTGTG
131 CTAAG-ATCAGACCGGACCGAAGGTTGCG
* * ** * * *
16624118 GCGGC-GAGACCGGTAGCACGCGGAGGGGGACCGGGCCGATCCCCGACTTGGGCATTATGCCTCT
1 GCAGCAG-GATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT
** * * * * *
16624182 TTGGCCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTATGCGTACGGAGTTCATTCC-T
64 CCGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
*
16624246 AGTCTAAGATCAGACCGAACCGAAGGTTGCG
129 -GTCTAAGATCAGACCGGACCGAAGGTTGCG
*** **
16624277 GCAGCAGGATCGACAGCACGCAGGGGGGACCAAACCGATCCCTTACTTGCGCA-TCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
* * * * * *
16624341 GACCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
16624406 CTAA
131 CTAA
16624410 ACATACGGAG
Statistics
Matches: 354, Mismatches: 81, Indels: 28
0.76 0.17 0.06
Matches are distributed among these distances:
155 1 0.00
156 21 0.06
157 167 0.47
158 125 0.35
159 38 0.11
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
GGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
CTAAGATCAGACCGGACCGAAGGTTGCG
Found at i:16624433 original size:26 final size:26
Alignment explanation
Indices: 16624385--16624435 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624375 TTGGCTTAGG
*
16624385 CATAAGGAGTTCATTCCATGTCTAAA
1 CATAAGGAGTTCATTCCACGTCTAAA
* *
16624411 CATACGGAGTTCATTCCCCGTCTAA
1 CATAAGGAGTTCATTCCACGTCTAA
16624436 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCACGTCTAAA
Found at i:16625189 original size:26 final size:26
Alignment explanation
Indices: 16625153--16625205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16625143 GTTGGCTTAG
*
16625153 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16625179 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16625205 G
1 G
16625206 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16625581 original size:26 final size:26
Alignment explanation
Indices: 16625530--16625583 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
16625520 TGGGTTGACT
* *
16625530 TAGGCATAGGGAGTTCATCCGTAGTC
1 TAGGCATACGGAGTTCATCCGCAGTC
*
16625556 TAGGCTTACGGAGTTCATTCC-CAGTC
1 TAGGCATACGGAGTTCA-TCCGCAGTC
16625582 TA
1 TA
16625584 AGATCAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCGCAGTC
Found at i:16626064 original size:26 final size:26
Alignment explanation
Indices: 16626035--16626087 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626025 GTTGGCTTAG
16626035 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
16626061 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
16626087 G
1 G
16626088 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:16626370 original size:13 final size:13
Alignment explanation
Indices: 16626352--16626379 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16626342 TGCACATTAT
16626352 GCCTCTCCGACCG
1 GCCTCTCCGACCG
16626365 GCCTCTCCGACCG
1 GCCTCTCCGACCG
16626378 GC
1 GC
16626380 TGAACGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.54, G:0.25, T:0.14
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:16626452 original size:26 final size:26
Alignment explanation
Indices: 16626416--16626468 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626406 GTAGACTTAT
16626416 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
16626442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16626468 G
1 G
16626469 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16626804 original size:159 final size:158
Alignment explanation
Indices: 16626442--16626806 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
16626432 CTCAGTCTAA
* * * *
16626442 GCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTTGCAGCAGGATCGAC
1 GCATA-GGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGAAGGACCGAC
* * * * * ***
16626506 AGCATGCAGGGGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGTGC
65 AGCACGCAAGGGGGACCAGACCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGTGC
* *
16626571 CCGCACGCCCATTTCATGGGTTGGCTTAG
130 ACGCACGCCCATTTCATGGGTTGACTTAG
* ** * *
16626600 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCA-AAGGGACCG
1 GCATAGGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGAA-GGACCG
* *
16626662 GCAGCACGCCAAGGGGGACCAGACCGATCCCCA-GCTTGCGCATTATGCCTCTTCGACCAGC-GC
63 ACAGCACG-CAAGGGGGACCAGACCGAT-CCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTG-
* * * *
16626725 AGTGCATGCACGCTCATTTCGTGGGTTGACTTAT
125 AGTGCACGCACGCCCATTTCATGGGTTGACTTAG
* * *
16626759 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTG
1 GCATAGGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
16626807 CTGCCATAGG
Statistics
Matches: 166, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.04
158 51 0.31
159 102 0.61
160 7 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATAGGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGAAGGACCGACA
GCACGCAAGGGGGACCAGACCGATCCCAGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGTGCA
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:16626843 original size:884 final size:877
Alignment explanation
Indices: 16624772--16626972 Score: 2517
Period size: 883 Copynumber: 2.5 Consensus size: 877
16624762 GCCGGTCCTC
16624772 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * *
16624837 GCATAGGGAGCTCCTTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACTGGTA
66 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCA
* * * *
16624902 GCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTAC
131 GCACGCAGAGGGGGACCGA-CCGATCCCCAGCTTGCGCATTATGCCTCTTC-GCCGGCTCAGTGC
* * * * *
16624967 CCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATTGATCAG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGACCAG
* * *
16625032 ATCGAGGGTTGC-GACAGCAGGATTGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTACG
259 ATCGAGGGTTGCTGACAGCAGGATTGACAGCACG-TAGGGGGATCGGGTCGATCCCCGGCTTACG
* * ** * * *
16625096 CATTCTACCTCTTTGGTTGGCTGAGAGC-CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
323 CATTCTGCCTCTCTGGCCGACTGA-AGCGCGGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
16625160 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGAACCAAGGGT
387 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGAACCAAGGGT
* ** * *
16625225 TGCGACAGTAGGACCAGCAGCAGGATTGGCAGCACACAGGGGGGGACCGGCCGATCCCCGACTTG
451 TGCGACAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGGGGGACCGGCCAATCCCCGACTTA
* ** * * *
16625290 CGCATTCTACCTCTCTGACCGGTTGGGTGCCTGCACGCTCGATTCATGGGTTGGCTTAGGCATAC
516 CGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATAC
* * * * * * * * *
16625355 GAAGTTCATTCTATGTTTAAGCCCCAGTCGAACTGAGGGTTGTGGCAGCAGGACTGGCATCGGCA
581 GAAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAGGGTTATGGCAGCAAGACTGACAGCGGCA
* * * ** ** *
16625420 TCGGCATCATGCAGAGGGGGACCGAGCCGATCCCTGGCTTATGCATTACGCATCTCCGGCCAGCC
646 TCGGCAGCACGCAGAAGGGGACCGAGCCGATCCCCAGCTTACACATTACGCATCTCCGACCAGCC
* * * *
16625485 TCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATCC
711 TCTCCGACCGGCTGAACGCCCGCACACTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATCC
* * * * *
16625550 GTAGTCTAGGCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTA
776 GTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCA
16625615 GGATCAGCAACACGCAGGGGGACCAGGCCGATTCCCA
841 GGATCAGCAACACGCAGGGGGACCAGGCCGATTCCCA
* * * * * * * *
16625652 -ACTTGTGCATTCTGTCTCTCCGGCCGGTTGAGCACTCGTACGCCTGTTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * *
16625716 GCATACGGAGTTCATTCCATGTCTATGCCCTAGTCAGACTGAGGGTTGTGGCAACGGGACCGACT
66 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCA
* * * * **
16625781 GCATGCAGAGGGGGACCGGGCCAATCCCTGAG-TTGCGCATTATGCCTCTCTCGCCGGCTCAACG
131 GCACGCAGAGGGGGACC-GACCGATCCC-CAGCTTGCGCATTATGCCTCT-TCGCCGGCTCAGTG
* * *
16625845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACT
193 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TAGACC
* * * ** ** * *
16625910 GGACCGAGAGTTG-TGGTAGCAACATCGACAGAACGTAGGGTGGGATCGGGTCGATCCCCGGCTT
257 AGATCGAGGGTTGCTGACAGCAGGATTGACAGCACGTA-GG-GGGATCGGGTCGATCCCCGGCTT
* * * * *
16625974 ACACATTCTGCCTCTCCGACCGATTGAAGCGGCGGTACACTCGTTTCGTGGGTTGGCTTAGGCAT
320 ACGCATTCTGCCTCTCTGGCCGACTGAAGC-GCGGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * ** * *
16626039 ACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCGGATTGGACCGAG
384 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGAACCAAG
* * ** * * *
16626104 GGTTGCGATAGCAGGACCAGCAGCAGGATCAGTAGCACGTAGGTGGGGACCGGGCCAATCCCTGG
448 GGTTGCGACAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGGGGGACC-GGCCAATCCCCGA
* * * *
16626169 CTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGTACGCTTGTTTCGTGGGTTAGCTTAGGC
512 CTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGATTCATGGGTTAGCTTAGGC
*
16626234 ATAC-AGAGTTCATTCCATATCTAAGCCCCAGCC-AGACCGAGGGTTATGGCAGTAAGA-TCGAC
577 ATACGA-AGTTCATTCCATATCTAAGCCCCAGCCGA-ACCGAGGGTTATGGCAGCAAGACT-GAC
* * * * * * * * *
16626296 AGCGGGATCGGTAGCACGTAGAAGGGGATCGGGCTGATCCCCAGCTTGCACATTATGCCTCTCCG
639 AGCGGCATCGGCAGCACGCAGAAGGGGACCGAGCCGATCCCCAGCTTACACATTACGCATCTCCG
* * * *
16626361 ACCGGCCTCTCCGACCGGCTGAACGCCCGCACGCTCGCTTT-GTGGGTAGACTTATGCATACGGA
704 ACCAGCCTCTCCGACCGGCTGAACGCCCGCACACTCG-TTTCATGGGTAGACTTAGGCATACGGA
16626425 GTTCATCC-TCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
768 GTTCATCCGT-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
*** * * *
16626489 GTTGCAGCAGGATC-GACAGCATGCAGGGGGGACCGGGCCGA-TCCCA
832 ACGGCAGCAGGATCAG-CAACACGCA-GGGGGACCAGGCCGATTCCCA
* * ** *
16626535 GGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
*
16626600 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAAAGGGACCGGCA
66 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCA
* *
16626665 GCACGCCA-AGGGGGACCAGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCAGCGCAGTG
131 GCACG-CAGAGGGGGACC-GACCGATCCCCAGCTTGCGCATTATGCCTCTTCG-CCGGCTCAGTG
** * * *
16626729 CATGCACGCTCATTTCGTGGGTTGACTTATGCATATGAAGTTCATTCCCAGTCTAAGATCAGACC
193 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-AGACC
* * * * *
16626794 AAATCGAGGGTTGCTGCCA-TAGGATTGATAGCACGTAGGGGCAGATCGGGTCGATCCCCGACTT
257 AGATCGAGGGTTGCTGACAGCAGGATTGACAGCACGTAGGGG--GATCGGGTCGATCCCCGGCTT
* * * * * * * * *
16626858 GCGTATTTTGCCTCTCTGGCCTACTG-AGTGCTTGCT-CGCTCATTTTGTGGGTTGGCTTCGGCA
320 ACGCATTCTGCCTCTCTGGCCGACTGAAGCGC--GGTACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * *
16626921 TACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCAATCCCAATCTAAGAT
383 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC-ATTCCAGTCTAAGAT
16626973 TTTGAGCCAC
Statistics
Matches: 1085, Mismatches: 207, Indels: 55
0.81 0.15 0.04
Matches are distributed among these distances:
879 209 0.19
880 37 0.03
881 39 0.04
882 139 0.13
883 367 0.34
884 289 0.27
885 5 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (877 bp):
GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGGCA
GCACGCAGAGGGGGACCGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGCCGGCTCAGTGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGACCAGAT
CGAGGGTTGCTGACAGCAGGATTGACAGCACGTAGGGGGATCGGGTCGATCCCCGGCTTACGCAT
TCTGCCTCTCTGGCCGACTGAAGCGCGGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGA
CAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGGGGGACCGGCCAATCCCCGACTTACGCAT
TCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGAAGT
TCATTCCATATCTAAGCCCCAGCCGAACCGAGGGTTATGGCAGCAAGACTGACAGCGGCATCGGC
AGCACGCAGAAGGGGACCGAGCCGATCCCCAGCTTACACATTACGCATCTCCGACCAGCCTCTCC
GACCGGCTGAACGCCCGCACACTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATCCGTAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATC
AGCAACACGCAGGGGGACCAGGCCGATTCCCA
Done.