Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 112 of 138
Found at i:16628153 original size:26 final size:26
Alignment explanation
Indices: 16628104--16628154 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628094 TTGGCATAGG
*
16628104 CATACCGAGTTCATTCCATGTCTAAC
1 CATACCGAGTTCATTCCATATCTAAC
*
16628130 CATACGGAGTTCATTCCCA-ATCTAA
1 CATACCGAGTTCATT-CCATATCTAA
16628155 GATTAGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACCGAGTTCATTCCATATCTAAC
Found at i:16628986 original size:156 final size:155
Alignment explanation
Indices: 16628703--16628993 Score: 350
Period size: 156 Copynumber: 1.9 Consensus size: 155
16628693 AAATCAGATC
* * * * * *
16628703 GGACTGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAAGGGGGATCGAGTCGATCCTCGGTTTGC
1 GGACTGAGGGTTGCGGTAGTAGGACCAGTAGCACGCAAGGGGGACCGAGCCAATCCTCGGCTTGC
* * * * * ** * * *
16628768 GCATTCTGCCTCTCCGGTCGGTTGAGCGCGGGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACG
16628833 GAGTTTCCATGTCTAAGCCCCAGCT
131 GAGTTTCCATGTCTAAGCCCCAGCT
* * *
16628858 GGACTGAGGGTTGTGGTAGTGGGACCAGTAGCACGCAGAGGGGGACCGGGCCAATCC-CTGGCTT
1 GGACTGAGGGTTGCGGTAGTAGGACCAGTAGCACGCA-AGGGGGACCGAGCCAATCCTC-GGCTT
* * * *
16628922 GCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATA
64 GCGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATA
16628987 CGGAGTT
129 CGGAGTT
16628994 CATTCCCAGT
Statistics
Matches: 111, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
155 34 0.31
156 77 0.69
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (155 bp):
GGACTGAGGGTTGCGGTAGTAGGACCAGTAGCACGCAAGGGGGACCGAGCCAATCCTCGGCTTGC
GCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACG
GAGTTTCCATGTCTAAGCCCCAGCT
Found at i:16630395 original size:155 final size:165
Alignment explanation
Indices: 16629973--16630646 Score: 404
Period size: 171 Copynumber: 4.1 Consensus size: 165
16629963 GCACGCAGAA
* * * * ** * *
16629973 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-ATCTGAGCACCCGCATGCCC
1 GGGATCGGGCTGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGA-CTGAGCACCCGCACGCTC
* * * * * * * *
16630037 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCAAGGGT
65 ATTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGACCTAGTCAAACCGAGGGT
* ** * * * * *
16630102 TGTG-GCAG--TGGGAC-TGA-C---AGCATGCAAAAG
129 TATGAGCAGACCAGAACGAGATCGGTAGCACG-AGAGG
* * * * * * * * * *
16630132 GCGATCGGGCTGATCCTC-GACTTGCACATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTC
1 GGGATCGGGCTGATCCCCAG-CTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCTC
* * * * * *
16630196 GTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCA-GTCTAAGATC-AGATCAGACCGAGG
65 ATTTCATGGGTTGGCTTAGGCATACG-AGTTCATT-CCATGTCTAAGACCTAG-TCAAACCGAGG
* * *
16630259 G-T-T-A-C-GA-TAGCA-G-GATCGGTAGCACG-TAGG
127 GTTATGAGCAGACCAGAACGAGATCGGTAGCACGAGAGG
** *
16630289 GGGA-CGGGCTGATCCCCAG-TTGTGCATTCTACCTTTCCGGCCGACTGAGCACCCGCACGCTCA
1 GGGATCGGGCTGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCTCA
* * *
16630352 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCTAGTCAAACTGAGGGTT
66 TTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGACCTAGTCAAACCGAGGGTT
16630417 ATGGCAGCAGGACCAGAAGCGAGATCGGTAGCACGCAGAGG
130 AT-G-AGCA-GACCAGAA-CGAGATCGGTAGCACG-AGAGG
* ** * * * *
16630458 GGGATCGGGCTGATCCCCGGCTTGCACATTCTGTCTCTCTGGCTGGCTGAGCACCTGCACGCTCA
1 GGGATCGGGCTGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCTCA
* * ** *
16630523 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTT
66 TTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGACCTAGTCAAACCGAGGGTT
* * * ***
16630588 ATGGTAGCAGGACCGGTAGCGGGATCAACAGCACGCAGAGG
130 AT-G-AGCA-GACCAG-AACGAGATCGGTAGCACG-AGAGG
*
16630629 AGGATCGGGCTGATCCCC
1 GGGATCGGGCTGATCCCC
16630647 GGCAAGCGCA
Statistics
Matches: 405, Mismatches: 77, Indels: 54
0.76 0.14 0.10
Matches are distributed among these distances:
154 2 0.00
155 82 0.20
156 21 0.05
157 8 0.02
158 5 0.01
159 99 0.24
160 4 0.01
161 1 0.00
163 2 0.00
164 3 0.01
166 1 0.00
167 13 0.03
169 7 0.02
170 14 0.03
171 142 0.35
172 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (165 bp):
GGGATCGGGCTGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGACCTAGTCAAACCGAGGGTTA
TGAGCAGACCAGAACGAGATCGGTAGCACGAGAGG
Found at i:16630623 original size:171 final size:171
Alignment explanation
Indices: 16630333--16630649 Score: 492
Period size: 171 Copynumber: 1.9 Consensus size: 171
16630323 TTCCGGCCGA
*
16630333 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGC
1 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* *** *
16630398 CCTAGTCAAACTGAGGGTTATGGCAGCAGGACCAGAAGCGAGATCGGTAGCACGCAGAGGGGGAT
66 CCTAGCCAAACTGAGGGTTATGGCAGCAGGACCAGAAGCGAGATCAACAGCACGCAGAGGAGGAT
16630463 CGGGCTGATCCCCGGCTTGCACATTCTGTCTCTCTGGCTGG
131 CGGGCTGATCCCCGGCTTGCACATTCTGTCTCTCTGGCTGG
* *
16630504 CTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
** * * * *
16630569 CCTAGCCGGA-TCGAGGGTTATGGTAGCAGGACCGGTAGCGGGATCAACAGCACGCAGAGGAGGA
66 CCTAGCCAAACT-GAGGGTTATGGCAGCAGGACCAGAAGCGAGATCAACAGCACGCAGAGGAGGA
16630633 TCGGGCTGATCCCCGGC
130 TCGGGCTGATCCCCGGC
16630650 AAGCGCATTA
Statistics
Matches: 131, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
170 1 0.01
171 130 0.99
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (171 bp):
CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CCTAGCCAAACTGAGGGTTATGGCAGCAGGACCAGAAGCGAGATCAACAGCACGCAGAGGAGGAT
CGGGCTGATCCCCGGCTTGCACATTCTGTCTCTCTGGCTGG
Found at i:16631468 original size:26 final size:26
Alignment explanation
Indices: 16631438--16631487 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16631428 GACTTAGGCA
16631438 TACGGAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
*
16631464 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16631488 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:16631791 original size:158 final size:157
Alignment explanation
Indices: 16631521--16631811 Score: 374
Period size: 158 Copynumber: 1.8 Consensus size: 157
16631511 AGCAGTAGGA
* * * *
16631521 TCGGTAGCACGCAAGAGGGACTGGGTCGATCCCTGGCCTGCGCATTCTATCTCTTCGACCGGCTG
1 TCGGTAGCACGCAAGAGGGACTGGGTCGATCCCTGACCTACGCATTCTACCTCTTCGACCGACTG
***
16631586 AGTGCCCGCACACCCATTTCATGGGTTGGCCTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCC
66 AG-GCCCGCACACCCATTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
16631651 AGTTGGACCACGGTTTGATGGCAGCGGG
130 AGTTGGACCACGGTTTGATGGCAGCGGG
* * *
16631679 TCGGTAGCACGCAGGGAGGGA-TCGGGTCGATCCCTGACTTACGCATTCTACCTC-TCTGACTGA
1 TCGGTAGCACGCA-AGAGGGACT-GGGTCGATCCCTGACCTACGCATTCTACCTCTTC-GACCGA
* * * *
16631742 TTGA-GCACCGCACGCTCATTTCATGGGTT-GCCTTAGGCATACAGAGTTCATTTCATGTCTAAG
63 CTGAGGC-CCGCACACCCATTTCATGGGTTGGCC-TAGGCATACAGAGTTCATTCCATGTCTAAG
16631805 CCCCAGT
126 CCCCAGT
16631812 CAGACCGAAG
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
157 5 0.04
158 69 0.61
159 40 0.35
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (157 bp):
TCGGTAGCACGCAAGAGGGACTGGGTCGATCCCTGACCTACGCATTCTACCTCTTCGACCGACTG
AGGCCCGCACACCCATTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA
GTTGGACCACGGTTTGATGGCAGCGGG
Found at i:16631843 original size:21 final size:21
Alignment explanation
Indices: 16631817--16631861 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
16631807 CCAGTCAGAC
16631817 CGAAGGTTCTGGTAGTAGGAT
1 CGAAGGTTCTGGTAGTAGGAT
16631838 CGAAGGTTCTGGTAGTAGGAT
1 CGAAGGTTCTGGTAGTAGGAT
16631859 CGA
1 CGA
16631862 TAGCGGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.11, G:0.38, T:0.27
Consensus pattern (21 bp):
CGAAGGTTCTGGTAGTAGGAT
Found at i:16631990 original size:26 final size:26
Alignment explanation
Indices: 16631954--16632006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16631944 GTTGACTTAG
16631954 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
16631980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
16632006 G
1 G
16632007 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:16632385 original size:144 final size:144
Alignment explanation
Indices: 16632125--16632405 Score: 354
Period size: 144 Copynumber: 2.0 Consensus size: 144
16632115 GTCCGTTTCA
* ** *
16632125 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTACGAT
* * * * * *
16632190 AGCGGGACTGGCAGCACGCAGAGAGGGACCGGGCCTATCCTCGGCTTGCGCATTATGCCTCTCCG
66 AGCAGGACTGACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
16632255 ACCGGCTCAACGCC
131 ACCGGCTCAACGCC
* * *
16632269 TGGGTTGGCTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTACG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCA-ACCGGACCGAGGGTTACG
* * *
16632332 ATAGCAGGA-TCGACAGCACGTAG-GAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTC
64 ATAGCAGGACT-GACAGCACGCAGAGA-GGGACCGGGCCGATCCCCGACTTGCGCATTATACCTC
16632395 TCCGACCGGCT
127 TCCGACCGGCT
16632406 GAGCACCTGT
Statistics
Matches: 117, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
143 5 0.04
144 109 0.93
145 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.21
Consensus pattern (144 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTACGAT
AGCAGGACTGACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCG
ACCGGCTCAACGCC
Found at i:16632472 original size:26 final size:26
Alignment explanation
Indices: 16632443--16632493 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16632433 TACCTTAGGC
*
16632443 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
16632469 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16632494 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:16632916 original size:184 final size:184
Alignment explanation
Indices: 16632615--16633009 Score: 535
Period size: 184 Copynumber: 2.1 Consensus size: 184
16632605 GCGCCCAAAT
* *
16632615 GCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCACT
* * * *
16632680 CCTAGTCTAAGATCAAACTGGACCGAAGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACC
66 CCCAGTCTAAGATCAAACCGGACCGAAGATTGCGGCAGCAGGATCAACAGCACGCAGGGGGGACC
* * * *
16632745 -AGGCCGATCCCCGGCTTGCACATTATGCCTCTTTGGCCGGCTCAGCGCCCGCAC
131 GA-GCCGATCCCCGACTTGCACATTATGCCTCTTCGGCCAGCTCAGCGACCGCAC
* * * * *
16632799 GTTCGTTTCATGGGTTGACTTATGCATA-TGCAGTTCATCCCCAGTCTAAGCATACGAAGTTCAC
1 GCTCGTTTCATGGGTTGACTTAGGCAAACAG-AGTTCATCCCCAATCTAAGCATACGAAGTTCAC
* ** *
16632863 TCCCAGTCTATGATCGGACCGGACCGAAGATTGCGGCAGCAGGATCGACAGCACGCAGGGGGGAC
65 TCCCAGTCTAAGATCAAACCGGACCGAAGATTGCGGCAGCAGGATCAACAGCACGCAGGGGGGAC
* * *
16632928 CGAGCCGATCCCCGACTTGCACATTCTGCCTCTTCGGCCAGCTGAGCGATCGCAC
130 CGAGCCGATCCCCGACTTGCACATTATGCCTCTTCGGCCAGCTCAGCGACCGCAC
16632983 GCTCGTTTTCATGGGTT-AGCTTAGGCA
1 GCTCG-TTTCATGGGTTGA-CTTAGGCA
16633010 TAGGGAGTGC
Statistics
Matches: 183, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
183 1 0.01
184 163 0.89
185 19 0.10
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
GCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCACT
CCCAGTCTAAGATCAAACCGGACCGAAGATTGCGGCAGCAGGATCAACAGCACGCAGGGGGGACC
GAGCCGATCCCCGACTTGCACATTATGCCTCTTCGGCCAGCTCAGCGACCGCAC
Found at i:16633176 original size:159 final size:159
Alignment explanation
Indices: 16632897--16633252 Score: 353
Period size: 159 Copynumber: 2.2 Consensus size: 159
16632887 CGAAGATTGC
* *
16632897 GGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTT
1 GGCAGCAGGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTT
* * * * * *
16632962 CGGCCAGCTGAGCGATCGCACGCTCGTTTTCATGGGTTAGCTTAGGCATAGGGAGTGCATT-CCA
66 AGGCCAGCTCAGCGACCACACGCTCGATTTCATGGGTTAGCTTAGGCATACGGAGTGCATTCCCA
16633026 TGTCTAAGCCCCAATTAGACCGAGGGTTGT
131 -GTCTAAGCCCCAATTAGACCGAGGGTTGT
* * * * *
16633056 GGCAGCAGGATCGACAACACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCACATTATGCCTCT
1 GGCAGCAGGATCGACAACACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCT
* * * * * * *
16633121 TAGGTCGGTTCAGC-ACCCACACGTTC-ATTTCGTGGGTT-GACTTATGCATACGGAGTTCATTC
65 TAGGCCAGCTCAGCGA-CCACACGCTCGATTTCATGGGTTAG-CTTAGGCATACGGAGTGCATTC
** *** *
16633183 CCAGTCTAAG-ATCAGACCGGACCGAGGGTTGC
128 CCAGTCTAAGCCCCA-ATTAGACCGAGGGTTGT
** * *
16633215 GATAGCAGGATCGACAGCACGCTGGGGGGTACCGAGCC
1 GGCAGCAGGATCGACAACACGCAGGGGGG-ACCGAGCC
16633253 CCCGGCTTGC
Statistics
Matches: 158, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
158 8 0.05
159 97 0.61
160 53 0.34
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (159 bp):
GGCAGCAGGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTT
AGGCCAGCTCAGCGACCACACGCTCGATTTCATGGGTTAGCTTAGGCATACGGAGTGCATTCCCA
GTCTAAGCCCCAATTAGACCGAGGGTTGT
Found at i:16633371 original size:26 final size:26
Alignment explanation
Indices: 16633321--16633373 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16633311 GTTGGCTTAG
*
16633321 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
16633347 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
16633373 G
1 G
16633374 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:16634131 original size:26 final size:26
Alignment explanation
Indices: 16634095--16634147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16634085 GTTGACTTTG
16634095 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16634121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16634147 G
1 G
16634148 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16634623 original size:158 final size:156
Alignment explanation
Indices: 16634121--16634623 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 156
16634111 CCTAGTCTAA
** * *
16634121 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCG-ATCGAGGGTTGAGGTAGCAGGATCGGTA
* * * * * *
16634186 GCACGC-AGGTGGGATCGGGTCGATCCCCT-GCTTGCGCATTCTACCTCTCCGGCCGACTGAGCA
65 GCACGCAAGG-GGGACCAGGCCGAT-CCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCA
16634249 CCCGCATGCCT-GTTT-AGTGGGTTGGCTTAG
128 CCCGCA--CCTCGTTTCA-TGGGTTGGCTTAG
* * ** * * * * * * * *
16634279 GCATAGGGAGTTCAAT-CCATGTCTAAGCCCCAGCTGGATCAAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAAC-CGATCGAGGGTTGAGGTAGCAGGATCGGT
* * * * * *
16634343 AGCACACAGAGGGGTACCAGGCCGATCCCTGGCTTGCGCA-TATGCCTCTTCGACCGGCTCAGCT
64 AGCACGCA-AGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCA
* *
16634407 CCCGCACGCTCGTTTCATGGGTTGACTTAT
128 CCCGCAC-CTCGTTTCATGGGTTGGCTTAG
* * * *
16634437 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGATCGAGGGTTAAGGTAGCAGGATCGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GATCGAGGGTTGAGGTAGCAGGATCGGTA
* * * * *
16634502 GCATGCAAGGGGGACCAAGCCAATCCCTGGCTTGCTCATTCTGCCTCTTCGGCCGGCTGAGCGCC
65 GCACGCAAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACC
*
16634567 CGCACACTCGTTTCATGGGTGGGCTTAG
130 CGCAC-CTCGTTTCATGGGTTGGCTTAG
16634595 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
16634624 TTTGAGAGAC
Statistics
Matches: 275, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 32 0.12
158 215 0.78
159 24 0.09
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGATCGAGGGTTGAGGTAGCAGGATCGGTAG
CACGCAAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCC
GCACCTCGTTTCATGGGTTGGCTTAG
Found at i:16635694 original size:26 final size:26
Alignment explanation
Indices: 16635664--16635716 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16635654 GTTGACTTAG
16635664 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
16635690 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16635716 G
1 G
16635717 ATCAAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16635997 original size:159 final size:159
Alignment explanation
Indices: 16635776--16636192 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
16635766 GGTCGAGCTA
* * * * * ** * *
16635776 ATCCCTGGCTTGCGCATTCTTCCTCTCCGGCCGGCAGAGCACCCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
16635841 GCTTAGGCATA-GCAAGTTCAGTCCATGTCTAAGCCCCA-ACCAGACCAAGGGTTG-TGGCA-GT
66 GCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCT-GCATCT
** **
16635902 AGGACCGACAGCACGTAGAGGGGGACCGGGTTG
129 A-GACCGACAGCACGTAG-GGGGGACCAAGCCG
* * ** * * *
16635935 ATCCCCGTCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGGCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * * * *
16636000 ACTTATGCATACGGAGTTTATTCCCA-GTGTAAG-ATCAGACCGGACCGAGGGTTGCTGCATCTA
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCTGCATCTA
**
16636063 GATTGACAGCACGTAGGGGGGACCAAGCCG
130 GACCGACAGCACGTAGGGGGGACCAAGCCG
* * * *
16636093 ATCCCCGGCTTGCGCATTCTGGCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
16636158 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16636193 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 91 0.44
159 106 0.51
160 7 0.03
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCTGCATCTAG
ACCGACAGCACGTAGGGGGGACCAAGCCG
Found at i:16636193 original size:26 final size:26
Alignment explanation
Indices: 16636164--16636216 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16636154 GTTGGCTTAG
16636164 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16636190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16636216 G
1 G
16636217 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16638263 original size:26 final size:26
Alignment explanation
Indices: 16638225--16638277 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16638215 GGCTCAAAAT
16638225 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
16638251 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
16638277 C
1 C
16638278 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16638642 original size:158 final size:156
Alignment explanation
Indices: 16638250--16638655 Score: 394
Period size: 158 Copynumber: 2.6 Consensus size: 156
16638240 AACCCCGTAT
* *
16638250 GCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-CGTGTGGGTGCTCAG
* ** * *
16638315 TCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTCTGCATGCTATCGATCC
65 TCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGATCCCCTCTACATGCTACCGATCC
** *
16638380 TACTACTGCAACCCTCGGTCTAGTCTGA
130 -ACTACCACAACCCTCGGTCTAGGCTGA
* * * * * * *
16638408 TCTTAGAC-TGGAATGAAATTCGTATGCATAAGTCAACCCACGAAATGA-GTGTGCGG-GCACTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGTG-GGTG--CTC
* * * * * * * *
16638470 AGCCAGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGCC-A
63 AGTCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGAT-CCCCTCTACATGCTACCGA
*
16638534 GTCC-CGTAGCCACAATCCTCGGTCT-GGCT-A
127 -TCCAC-TA-CCACAACCCTCGGTCTAGGCTGA
* * *
16638564 GGGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCGAAACAGACGTTTGGGTGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GACGTGTGGGTGCTCA
*
16638629 GTCGGTAGGAGAGGCAAAATGCGTAAG
64 GTCGGTCGGAGAGGCAAAATGCGTAAG
16638656 TCAGGGATCA
Statistics
Matches: 195, Mismatches: 41, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
155 6 0.03
156 4 0.02
157 84 0.43
158 92 0.47
159 4 0.02
160 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGTGGGTGCTCAGT
CGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGATCCCCTCTACATGCTACCGATCCA
CTACCACAACCCTCGGTCTAGGCTGA
Found at i:16639106 original size:26 final size:26
Alignment explanation
Indices: 16639077--16639129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16639067 CTGGTCCGAT
*
16639077 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16639103 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16639129 C
1 C
16639130 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16639819 original size:159 final size:158
Alignment explanation
Indices: 16639621--16639923 Score: 392
Period size: 159 Copynumber: 1.9 Consensus size: 158
16639611 TGATCCAATC
*
16639621 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCA
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCA
* * * * * * *
16639686 GATCGGATAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCACTCTGCGTGTTGTCAATCCC
66 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCAATCCC
*
16639751 GCTGCCACAACCCTCGGTCCGGCTGGAGG
130 GCTGCCACAAACCTCGGTCCGGCTGGAGG
* * * ** * *
16639780 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGGGTGTTGGTGCTTAGC
1 TTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
* * * *
16639844 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCT
65 AGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCCC
*
16639909 GCTGCCGCAAACCTC
130 GCTGCCACAAACCTC
16639924 ATTCCAGTTT
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 28 0.23
159 93 0.76
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGCA
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCCCG
CTGCCACAAACCTCGGTCCGGCTGGAGG
Found at i:16639973 original size:26 final size:26
Alignment explanation
Indices: 16639937--16639989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16639927 CCAGTTTGAT
* *
16639937 CTTAGCCTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16639963 CTTAGACTGGGGATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
16639989 C
1 C
16639990 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16641201 original size:26 final size:26
Alignment explanation
Indices: 16641172--16641224 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16641162 TCAATCTGAT
* *
16641172 CTTAGACT-GGGAATTAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16641198 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16641224 C
1 C
16641225 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16642774 original size:26 final size:26
Alignment explanation
Indices: 16642736--16642788 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16642726 TGCTCAAAAT
16642736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16642762 CTTAGACAT-GGAATGAAGTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16642788 C
1 C
16642789 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16643178 original size:159 final size:157
Alignment explanation
Indices: 16642761--16643260 Score: 425
Period size: 159 Copynumber: 3.2 Consensus size: 157
16642751 AACTCCGTAT
* *
16642761 GCTTAGACATGGAATGAAGTCTGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
16642826 CCGATCGGAGAGGCAAAATGCGTAAGTCGAGGATCG-CCCGATCCCCCCTGT-GTGCTGTTGATC
66 CAGA-CGGAGAGGCAAAATGCCTAAGCCGGGGATCGACCCGAT-CCCCCTTTCGTGCTGCCGATC
* * * * * * *
16642889 TTGCTGCTGTAACCCACAGTCTGTTTCGA
129 CTACTGCCGCAACCCTCGGTCTGGTTCGA
* * ** * *
16642918 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
16642982 GCCAGTCGAAGAGGCATAAT-CCGTAGGCCAGGCATCGACCCGATCCCCCTTTTCGTGCTGCCGG
65 G-CAGACGGAGAGGCAAAATGCC-TAAGCCGGGGATCGACCCGATCCCCC-TTTCGTGCTGCCGA
* * * *
16643046 TCCCACTGCCACAACCCTCGGTCTGGTTGGG
127 TCCTACTGCCGCAACCCTCGGTCTGGTTCGA
* * * *
16643077 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
16643142 TCGGACGGAGAGGTAGAATGCCCAAGCCGGGGATCGACCTGGTCCCCCTTACGTGCTACCGATCC
66 -CAGACGGAGAGGCAAAATGCCTAAGCCGGGGATCGACCCGATCCCCCTTTCGTGCTGCCGATCC
* * ** *
16643207 TTCTGTCGCAACCCTCGGTCCAGTCCGA
130 TACTGCCGCAACCCTCGGTCTGGTTCGA
* *
16643235 TCTTAGAC-TGTGAATGAACTCTGTAT
1 GCTTAGACATG-GAATGAACTCCGTAT
16643261 CCTTAAACTA
Statistics
Matches: 265, Mismatches: 69, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
156 2 0.01
157 83 0.31
158 63 0.24
159 114 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCAG
CAGACGGAGAGGCAAAATGCCTAAGCCGGGGATCGACCCGATCCCCCTTTCGTGCTGCCGATCCT
ACTGCCGCAACCCTCGGTCTGGTTCGA
Found at i:16645064 original size:17 final size:17
Alignment explanation
Indices: 16645040--16645079 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
16645030 ATCGTCGGCA
16645040 CCAGCACATGCCCGAGC
1 CCAGCACATGCCCGAGC
*
16645057 CTAGCACATGCCCGAGC
1 CCAGCACATGCCCGAGC
16645074 CCAGCA
1 CCAGCA
16645080 TGTGCACCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.25, C:0.45, G:0.23, T:0.07
Consensus pattern (17 bp):
CCAGCACATGCCCGAGC
Found at i:16645575 original size:171 final size:169
Alignment explanation
Indices: 16645125--16645615 Score: 617
Period size: 171 Copynumber: 2.9 Consensus size: 169
16645115 AACTCCATAT
* * * * * *
16645125 GCTTAGGCATAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
16645190 CCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTTCTGCATGCTGCCAATC
66 CCGG-TGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAATC
* * *
16645255 CCGCTGTCGATCTTGCTGCCACAACCCTCGGTCCGGCTAGG
129 CCGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGCTAGG
* * * *
16645296 GCTTAGACATGGAATGAACTCCATATGCCTATGTCAACCCACGAAACGAACGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * * *
16645361 CCGGCCAGAGAGGCATAATGCACAAGTCGAGGATCAGCCCGGTCCCCCTCTACATGCTGCCAATC
66 CCGGTGA-AGAGGCATAATGCGCAAGCCG-GGATCAGCCCGGTCCCCCTCTGCATGCTGCCAATC
16645426 CCGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGCTAGG
129 CCGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGCTAGG
* * *
16645467 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
16645532 CCAGGTGAAGAGGTAGAATGCGCAAGCCAGGGAT-TGACCCGGTCCCCC-CTGCGTGCTGCCGAT
66 CC-GGTGAAGAGGCATAATGCGCAAGCC-GGGATCAG-CCCGGTCCCCCTCTGCATGCTGCCAAT
* * * *
16645595 CCTGCTACTGGTCCTGCTGCC
128 CCCGCTGCCGGTCTTGCTGCC
16645616 GTAACCCTTG
Statistics
Matches: 274, Mismatches: 41, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
170 31 0.11
171 239 0.87
172 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (169 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGTGAAGAGGCATAATGCGCAAGCCGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCAATCCC
GCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGGCTAGG
Found at i:16652104 original size:27 final size:26
Alignment explanation
Indices: 16652047--16652105 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16652037 TTAGACTGGG
***
16652047 AATGAACTCCGTATGCTAAGACATGG
1 AATGAACTCCGTATGCTAAGACAACC
*
16652073 AATGAACTCCGTATGCCTAAGCCAACC
1 AATGAACTCCGTATG-CTAAGACAACC
*
16652100 CATGAA
1 AATGAA
16652106 ACGAGCGTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (26 bp):
AATGAACTCCGTATGCTAAGACAACC
Found at i:16654218 original size:26 final size:27
Alignment explanation
Indices: 16654166--16654219 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
16654156 GGCTCAAAAT
16654166 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
*
16654193 CTTAGACTTGGAATG-AACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
16654219 C
1 C
16654220 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:16654705 original size:26 final size:26
Alignment explanation
Indices: 16654669--16654721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654659 CCGGTCTGAT
*
16654669 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
* *
16654695 CTTAGAGTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
16654721 C
1 C
16654722 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:16655014 original size:26 final size:26
Alignment explanation
Indices: 16654985--16655035 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654975 CCGGTCTGAT
*
16654985 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16655011 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16655036 TCCTAAGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16655088 original size:316 final size:316
Alignment explanation
Indices: 16654491--16655088 Score: 716
Period size: 316 Copynumber: 1.9 Consensus size: 316
16654481 CCGCTGCCAT
* * **
16654491 AACCCTCAGTCTGGCTGGGGTTTAGACATGGAATGAACTCCCTCTGTCTAAGCCAACCCATGAAA
1 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAA
* ** * * * *
16654556 CGGGCCAGCAGGTGCTCAACCGACCGAGGAGGCCGAATGCGTAAGTCGAGGATTGACCCAGTCCC
66 CGAGCCAGCAGGCACTCAACCGACCGAGGAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCCC
* * **
16654621 CCTTACGTGCTGCCCATCCTGCTCCCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
131 CCCTACGTGCTGCCCATCCTGCTACCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * *
16654686 CTTCGTATGCTTAGAGTGGGGATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
196 CTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACAG
* * *
16654751 GCGCTCAGCTGGCCGGAGAGGCCGACTGGAGAGTCATAATGCACAAGCCGGGGATC
261 GCGCTCAGCCGACCAGAGAGGCCGACTGGAGAGTCATAATGCACAAGCCGGGGATC
* ** *
16654807 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATCCCTAAGCCAACCCATGGAA
1 AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAA
* ** ** * * * *
16654872 TGAGCGTGCAGGCACTCAGTCGATCG-GAGAGGTAGAATGCATGAGCCGAGGATCGACCCGGTCC
66 CGAGCCAGCAGGCACTCAACCGACCGAG-GAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCC
* * * * * *
16654936 CCCCTGCGTGCTGTCGATCTTGCTATCGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGA
130 CCCCTACGTGCTGCCCATCCTGCTACCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* * * * *
16655001 AC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGTCCACCTC-CGAAATGAACGTG
195 ACTTC-GTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACC-CACGAAACGAACGTA
* *
16655064 CAGGTGTTCAGCCGACCAGAGAGGC
258 CAGGCGCTCAGCCGACCAGAGAGGC
16655089 AGGATGCGCA
Statistics
Matches: 231, Mismatches: 48, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
315 3 0.01
316 227 0.98
317 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (316 bp):
AACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAA
CGAGCCAGCAGGCACTCAACCGACCGAGGAGGCAGAATGCATAAGCCGAGGATCGACCCAGTCCC
CCCTACGTGCTGCCCATCCTGCTACCGAAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
CTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACAG
GCGCTCAGCCGACCAGAGAGGCCGACTGGAGAGTCATAATGCACAAGCCGGGGATC
Found at i:16655733 original size:26 final size:26
Alignment explanation
Indices: 16655704--16655773 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
16655694 TCTTAGACTA
16655704 GGAATGAACTCCGTATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
* *
16655730 GGAATGAACTTCATATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
16655756 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16655774 CTAAGCCGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGGCAT
Found at i:16656122 original size:27 final size:26
Alignment explanation
Indices: 16656070--16656122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16656060 GATCTTAGAT
* *
16656070 TGGGAATGAACTCTGTATGCTTAGTC
1 TGGGAATGAACTCCGTATGCTAAGTC
*
16656096 TGGGGATGAACTCCGTATGCCTAAGTC
1 TGGGAATGAACTCCGTATG-CTAAGTC
16656123 AACCCACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
TGGGAATGAACTCCGTATGCTAAGTC
Found at i:16656764 original size:158 final size:158
Alignment explanation
Indices: 16656515--16656934 Score: 405
Period size: 158 Copynumber: 2.7 Consensus size: 158
16656505 AGTCGATCGG
** * * * * ** **
16656515 AGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTTGCGTGCTATCGATCTTGCTATT
1 AGAGGCAGAATGCACAAGTCAGGGATCGACCCGGT-CCCCCTTGCATGCTGTCGATCCCGCTACC
* * * ** * * * * *
16656580 GCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
65 ACAACCCTCGATCCGATCTGAGCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
* *
16656645 AACGAGC-TGCGGGTGCTGAGCCAGCCAA
130 AACGAGCTTACGGGTGCTCAGCCAGCCAA
* * * * * *
16656673 AGCGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCC
1 AGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCT-TGCATGCTGTCGATCCCGCTACC
* *
16656738 ACAACCCTCGGTCCGA-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
65 ACAACCCTCGATCCGATCT-GAGCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
16656801 AAAACGGGCTTACGGGTGCTCAGCCGGTCAG
128 AAAACGAGCTTACGGGTGCTCAGCCAGCCAA
* ** * * *
16656832 AGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTATCG
1 AGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCCCGCTACCA
* *
16656897 CAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
66 CAACCCTCGATCCGATCTGAGCTTAGACTAGGAATGAA
16656935 GTCCATATAC
Statistics
Matches: 210, Mismatches: 46, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
157 8 0.04
158 148 0.70
159 54 0.26
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
AGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCCCGCTACCA
CAACCCTCGATCCGATCTGAGCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
ACGAGCTTACGGGTGCTCAGCCAGCCAA
Found at i:16657775 original size:26 final size:27
Alignment explanation
Indices: 16657739--16657796 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
16657729 CTGGTCCGAT
16657739 CTTAGACTGGGAATGAACT-TCGTATG-
1 CTTAGACTGGGAATGAACTCT-GTATGC
*
16657765 CTTAGACTGGGGATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
16657792 CTTAG
1 CTTAG
16657797 TCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCTGTATGC
Found at i:16657792 original size:821 final size:821
Alignment explanation
Indices: 16656208--16657816 Score: 1988
Period size: 821 Copynumber: 2.0 Consensus size: 821
16656198 CCCTCTACAT
* * * *
16656208 GCTGTCGATCCTGCTGCCACAGCCATCGGTTTGGATGGGGCTTAGACGTGGAATGAACTCCATAT
1 GCTGTCGATCCTACTACCACAACCATCGGTTTGGATGGGGCTTAGACATGGAATGAACTCCATAT
* * * * * ** ** *
16656273 GCCTAAGCCAACCCATGAAATGAGTGTGCGGGCGCTCAGTCGGTTGGAGAGGCAGATTGCGTAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAACCGACTGGAGAGGCAGAATGCGTAAG
* * *
16656338 TCGAAGATCGACCTGGTCCCCCCTATGTGCTGCCGATCTTGCTGCTGGTCCTGCTGCCCAAACCT
131 TCGAAGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTACTGCTGGTCCTGCTGCCCAAACCT
* * *** *
16656403 CGGTCTGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTAAGACATGGAATGAACTCCGTAT
196 CGATCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTAAGACATGGAATGAACCCCGTAT
* * * * * * ** *
16656468 GCCTAAGCCAACCCATGAAACGAAAGTGCGAGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAG
261 GCCTAAGACAACCCACGAAACGAAAATACGAGCGCTCAGCCGATCGGAGAGGCAGAAAGCACAAA
* * * * * **
16656533 CCAGGGATCGACCCGATCCCCCCTTGCGTGCTATCGATCTTGCTATTGCAACCCTCGGTCTGATC
326 CCAGGGACCAACCCAATCCCCCCTTGCGTGCTATCGATCCTACTACCGCAACCCTCGGTCTGATC
* ** * * **
16656598 CAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCTGCGGGTGCTG
391 CAATCTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCTACGGGCACTG
* ** * * *
16656663 AGCCAGCCAAAGCGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGG
456 AACCAGCCAAAAAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCAG
** *
16656728 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
521 TCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGC
* * *
16656793 CAACCCACAAAACGGGCTTACGGGTGCTCAGCCGGTCAGAGAGGCAGAATGCACAAGTCGGGGAT
586 CAACCCACAAAACGGGCTTACGGGGGCCCAGCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGAT
* ** * * * *
16656858 CGACCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAG
651 CGACCCGGTCCCCCCTCCGTACTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAG
* *
16656923 ACTGGGAATGAAGTCCATATACTTCGACTGGGGATGAACTTCGTATGCCTAAGTCAACCAACAAA
716 ACTGGGAATGAACTCCATATACTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCAACAAA
16656988 ACGAGCGTATGAGCGCTCCCCCTCTGCGTGCTGTCGATCCC
781 ACGAGCGTATGAGCGCTCCCCCTCTGCGTGCTGTCGATCCC
* * *
16657029 GCTGTCGGTCCTACTACCACAACCCTCGGTTT-GATTGGGGCTTAGACATGGAATGAACTCCGTA
1 GCTGTCGATCCTACTACCACAACCATCGGTTTGGA-TGGGGCTTAGACATGGAATGAACTCCATA
*
16657093 TGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAACCGACTGGAGAGGTAGAATGCGTAA
65 TGCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAACCGACTGGAGAGGCAGAATGCGTAA
* * *
16657158 G-CTGAGGATCG-GCTCGGTCCCCCCTGCGTGCTGCCGATCCTACT-CTGGTCCTGCTG-CCATA
130 GTC-GAAGATCGACCT-GGTCCCCCCTACGTGCTGCCGATCCTACTGCTGGTCCTGCTGCCCA-A
* *
16657219 ACCCTCGATCCAG-TCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACC
192 A-CCTCGAT-CAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTAAGACATGGAATGAACC
* *
16657283 CCGTATGCCTAAGACAACCCACGAAACGAAAATAC-AGGCGCTCAGCCGGTCGGAGAGGTAGAAA
255 CCGTATGCCTAAGACAACCCACGAAACGAAAATACGA-GCGCTCAGCCGATCGGAGAGGCAGAAA
* * *
16657347 GCACAAACC-GAGGACCAACCCAAT-CCCCCTTGCGTGCTGTCGTTCCTACTGCCGCAACCCTCG
319 GCACAAACCAG-GGACCAACCCAATCCCCCCTTGCGTGCTATCGATCCTACTACCGCAACCCTCG
* * * * *
16657410 GT-TCGGTCCGATCTTCGATTGGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCGT
383 GTCT-GATCCAATCTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGC-T
* * * *
16657474 ATGGGCACTGAACC-GATCAAAAAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTCTG
446 ACGGGCACTGAACCAG-CCAAAAAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTG
* * * **
16657538 CGTGCTGTCAGTCCCGCTGCCACAACCCTCAATCTGTCTTTGGCTTAGACATGGAATGAAATCCC
510 CATGCTGTCAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAAATCCC
* * * * *
16657603 TATGCCTAAGCCAACCCACGAAATGGG-TGTACGGGGGCCCAGTCGG-CTGGAGGGGCAGAATGC
575 TATGCCTAAGCCAACCCACAAAACGGGCT-TACGGGGGCCCAGCCGGTC-AGAGAGGCAGAATGC
* *
16657666 GCAAGCCGGGGATC-AGCCCGGTCCCCCCTCCGTACTGCCGATCCTGCTACCGCAACCCTCGGTC
638 ACAAGCCGGGGATCGA-CCCGGTCCCCCCTCCGTACTGCCGATCCTGCTACCGCAACCCTCGATC
* * * * *
16657730 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC-TCTGTATGCCT
702 CGATCCGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGGGATGAACTTC-GTATGCCT
* * *
16657794 TAGTCAACCCACGAAACGAGCGT
766 AAGTCAACCAACAAAACGAGCGT
16657817 GCAAACGCTT
Statistics
Matches: 663, Mismatches: 110, Indels: 30
0.83 0.14 0.04
Matches are distributed among these distances:
819 4 0.01
820 110 0.17
821 547 0.83
822 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (821 bp):
GCTGTCGATCCTACTACCACAACCATCGGTTTGGATGGGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCATGAAACGAGCGTACGAGCACTCAACCGACTGGAGAGGCAGAATGCGTAAG
TCGAAGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCTACTGCTGGTCCTGCTGCCCAAACCT
CGATCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTAAGACATGGAATGAACCCCGTAT
GCCTAAGACAACCCACGAAACGAAAATACGAGCGCTCAGCCGATCGGAGAGGCAGAAAGCACAAA
CCAGGGACCAACCCAATCCCCCCTTGCGTGCTATCGATCCTACTACCGCAACCCTCGGTCTGATC
CAATCTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCTACGGGCACTG
AACCAGCCAAAAAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTGTCAG
TCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGC
CAACCCACAAAACGGGCTTACGGGGGCCCAGCCGGTCAGAGAGGCAGAATGCACAAGCCGGGGAT
CGACCCGGTCCCCCCTCCGTACTGCCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAG
ACTGGGAATGAACTCCATATACTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCAACAAA
ACGAGCGTATGAGCGCTCCCCCTCTGCGTGCTGTCGATCCC
Found at i:16658499 original size:26 final size:26
Alignment explanation
Indices: 16658461--16658539 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16658451 GGCTCAAAAT
16658461 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
16658487 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
16658513 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
16658539 C
1 C
16658540 CTAAGCCAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16658866 original size:26 final size:26
Alignment explanation
Indices: 16658830--16658881 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16658820 CCAGTTCAAT
*
16658830 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16658856 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16658882 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16659181 original size:196 final size:196
Alignment explanation
Indices: 16658813--16659181 Score: 478
Period size: 196 Copynumber: 1.9 Consensus size: 196
16658803 CTGCCACAAC
* * *
16658813 CCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCG
1 CCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
16658878 TATGACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTGGCATAATGCAT
66 TATGACTAAGCCAACCCACGAAACGAGCGTGCGAGCCCTCAACCGACCAGAGAGGCAGAATGCAC
* * *
16658943 AAGTCGGGGATCGATTCGGTCCCCCCTGCGTGCTGTTGATCCTACTGTTGGTCCTACTACCGTAA
131 AAGTCGGGGATCGACTCGATCCCCCCTACGTGCTGTTGATCCTACTGTTGGTCCTACTACCGTAA
16659008 G
196 G
*
16659009 CCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCC
1 CCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCTGTATGCTTAGAC-TGGGAATGAACTCC
* * *
16659073 GTATGCCTAAGCCAACCCA-GAAAACGAGCGTGCGAGCCCTCAGCCGACCAGAGAGGTAGAATGC
65 GTATGACTAAGCCAACCCACG-AAACGAGCGTGCGAGCCCTCAACCGACCAGAGAGGCAGAATGC
* *
16659137 GCAAG-CTGGGGA-CTGGCTCGATCCCCTCCTACGTGCTG-TGATCCT
129 ACAAGTC-GGGGATC-GACTCGATCCCC-CCTACGTGCTGTTGATCCT
16659182 GTTGCCGCAA
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
195 3 0.02
196 134 0.91
197 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
CCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
TATGACTAAGCCAACCCACGAAACGAGCGTGCGAGCCCTCAACCGACCAGAGAGGCAGAATGCAC
AAGTCGGGGATCGACTCGATCCCCCCTACGTGCTGTTGATCCTACTGTTGGTCCTACTACCGTAA
G
Found at i:16659677 original size:184 final size:183
Alignment explanation
Indices: 16659368--16659933 Score: 557
Period size: 184 Copynumber: 3.0 Consensus size: 183
16659358 TCCGGCTGGG
* * * * * *
16659368 GCTTAGACAAGGAATGAACTCCATAAGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGTTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTG-GGGCGTTCAG
* *
16659433 CCAGTTGGAGAGGCAGAATGCACAAGTCGGGGATCGGC-CTGGTCCCTCCTGCATGCTGCTGATC
65 CCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTC-GGTCCCTCCTGCATGCTGCTGATC
* *
16659497 ATGCTACCGCAACCCTCGGTCCGATTCGATCTTAGATTGGGAATGAACTCCGTAT
129 ATGCTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
16659552 GCTTAGACCGGGGATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGCCGTTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGGGG-CGTTCAG
* * **
16659617 CCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGTGTGCTGCTGATCC
65 CCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGCATGCTGCTGAT-C
* * * *
16659682 TACTGCTGGTCCTGCTGCCGCAAGCCTCGGTCC-AGTTTGAACTTAGACTGGGAATGAACTCCAT
129 -A----------TGCTGCCGCAACCCTCGGTCCGA-TTCGATCTTAGACTGGGAATGAACTCCGT
16659746 AT
182 AT
* * * * * **
16659748 ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGAAG-GTAATCA
1 GCTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGGGGCGT--TCA
* * *** * *
16659812 GCCAGTCGGAAAGGCAGAATGCACGAGCCGGGGA-CCAATCCGGTCCCCCCTGCATGCTGTTGAT
64 GCCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCT-CGGTCCCTCCTGCATGCTGCTGAT
* * * *
16659876 CCTACTGCCGCAACCCTCGGTCCG-GTCTGATCTTAGACTGGGAATGAACTTCGTAT
128 CATGCTGCCGCAACCCTCGGTCCGATTC-GATCTTAGACTGGGAATGAACTCCGTAT
16659932 GC
1 GC
16659934 CTAAGTCAAC
Statistics
Matches: 309, Mismatches: 53, Indels: 40
0.77 0.13 0.10
Matches are distributed among these distances:
183 4 0.01
184 151 0.49
185 2 0.01
186 1 0.00
194 2 0.01
195 4 0.01
196 145 0.47
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (183 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGGGGCGTTCAGC
CAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGCATGCTGCTGATCAT
GCTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16659844 original size:196 final size:195
Alignment explanation
Indices: 16659488--16659845 Score: 459
Period size: 196 Copynumber: 1.8 Consensus size: 195
16659478 CTCCTGCATG
* * * *
16659488 CTGCTGATCATGCTACCGCAACCCTCGGTCCGATTCGATCTTAGATTGGGAATGAACTCCGTATG
1 CTGCTGATCATGCTACCGCAACCCTCGGTCCGATTCGAACTTAGACTGGGAATGAACTCCATATA
* * * * **
16659553 CTTAGACCGGGGATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGCCGTTCAGC
66 CTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGAAG-CGTTCAGC
* *
16659618 CAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGTGTGCTGCTGATCCT
130 CAGCCGGAAAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGTGTGCTGCTGATCCT
16659683 A
195 A
* * * * *
16659684 CTGCTGGTCCTGCTGCCGCAAGCCTCGGTCC-AGTTTGAACTTAGACTGGGAATGAACTCCATAT
1 CTGCTGATCATGCTACCGCAACCCTCGGTCCGA-TTCGAACTTAGACTGGGAATGAACTCCATAT
* * * *
16659748 ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGAAG-GTAATCA
65 ACTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGAAGCGT--TCA
* *
16659812 GCCAGTCGGAAAGGCAGAATGCACGAGCCGGGGA
128 GCCAGCCGGAAAGGCAGAATGCACAAGCCGGGGA
16659846 CCAATCCGGT
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
194 2 0.01
195 1 0.01
196 133 0.98
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (195 bp):
CTGCTGATCATGCTACCGCAACCCTCGGTCCGATTCGAACTTAGACTGGGAATGAACTCCATATA
CTTAGACAGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGAAGCGTTCAGCC
AGCCGGAAAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCTCCTGTGTGCTGCTGATCCTA
Found at i:16659878 original size:697 final size:692
Alignment explanation
Indices: 16658513--16660396 Score: 2128
Period size: 697 Copynumber: 2.7 Consensus size: 692
16658503 ACTCCATATG
* * * ** *
16658513 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGCGCAGGAGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA-GAGCGTTCAGGA-CTGAG
* * * * * *** *
16658577 CCGGCCGAAAAGGCAGAATGCGTAAGTCGGGGATCGGCCTCGTCCCCCTCTACATGCTGCCGGTC
63 CCGGTCGGAGAGGCATAATGCGTAAGTCAGGGATCGGCC-CGTCCCCCTCTGTGTGCTGCAGGTC
* * *
16658642 CCACTGCCACAACCCGCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTA
127 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
16658707 ACCCACGAAATTGGCGTGTGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAACCAAGGGATCA
192 ACCCACGAAATGGGCGTGTGGGCGCTCAGCCG-TCGGAGAGGCAGAATGCGCAAGCAGGGGATCG
* * * *
16658772 ACCCAGTCCCCCCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGGTCCAGTTCAATCTTAGAC
256 GCCCAGTCCCCCCTGCATGCT-CTGATCATGCTGCCACAACCCTCGGTCCA-TTCAATCTTAGAC
* * *
16658837 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAAAC
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
16658902 GAGCGTGCGGG-CGCTCAACCGATCGGAGTGGCATAATGCATAAGTCGGGGATCGATTCGGTCCC
384 GAGCGTGCGGGCCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCCC
* * * *
16658966 CCCTGCGTGCTGTTGATCCTACTGTTGGTCCTACTACCGTAAGCCTCGGTCCAGTCCGATCTTAA
449 CCCTGCGTGCTGCTGATCCTACTGCTGGTCCTACTACCGCAAGCCTCGGTCCAGTCCGAACTTAA
** *
16659031 ACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAA
514 ACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAA
* ** * * * * **
16659096 ACGAGCGTGCGAGCCCTCAGCCGACCAGAGAGGTAGAATGCGCAAGCTGGGGACTGGCTCGATCC
579 ACGAGCGTGAGAGCAATCAGCCGACCAGAAAGGCAGAATGCACAAGCCGGGGACAAGCTCGATCC
* **
16659161 CCTCCTACGTGCTGTGATCCTGTTGCCGCAACCCTCGGTCCAGTCTGAT
644 CCTCCTACATGCTGTGATCCTACTGCCGCAACCCTCGGTCCAGTCTGAT
*
16659210 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCAGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA-GAGCGTTCAGG-ACTGAGC
* *
16659275 CGGTCGGAGAGGCATAATGCGTAAGTCAGGGATCGGCCCGGTCCCTCTTTGTGTGCTGCAGGTCC
64 CGGTCGGAGAGGCATAATGCGTAAGTCAGGGATCGGCCC-GTCCCCCTCTGTGTGCTGCAGGTCC
* * * * *
16659340 GGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACAAGGAATGAACTCCATAAGCCTAAGCCAA
128 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
16659405 CCCACGAAACGGGCATGTGGGCGTTCAGCCAGTTGGAGAGGCAGAATGCACAAGTC-GGGGATCG
193 CCCACGAAATGGGCGTGTGGGCGCTCAGCC-GTCGGAGAGGCAGAATGCGCAAG-CAGGGGATCG
** * * * * *
16659469 GCCTGGTCCCTCCTGCATGCTGCTGATCATGCTACCGCAACCCTCGGTCCGATTCGATCTTAGAT
256 GCCCAGTCCCCCCTGCATGCT-CTGATCATGCTGCCACAACCCTCGGTCC-ATTCAATCTTAGAC
* *
16659534 TGGGAATGAACTCCGTATGCTTAGACCGGGGATGAACTTCGTATGCCAAAGTCAACCCACGAAAC
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* * * *
16659599 GAGCGTG-GGGCCGTTCAGCC-AGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCC
384 GAGCGTGCGGGCCGCTCAACCGA-CCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCC
* * * * **
16659662 CTCCTGTGTGCTGCTGATCCTACTGCTGGTCCTGCTGCCGCAAGCCTCGGTCCAGTTTGAACTTA
448 CCCCTGCGTGCTGCTGATCCTACTGCTGGTCCTACTACCGCAAGCCTCGGTCCAGTCCGAACTTA
* *
16659727 GACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACG-
513 AACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GA
* * * * * *
16659791 AAACGAGTGTGA-AGGTAATCAGCC-AGTCGGAAAGGCAGAATGCACGAGCCGGGGACCAATC-C
577 AAACGAGCGTGAGA-GCAATCAGCCGA-CCAGAAAGGCAGAATGCACAAGCCGGGGA-CAAGCTC
* * *
16659853 GGTCCCC-CCTGCATGCTGTTGATCCTACTGCCGCAACCCTCGGTCCGGTCTGAT
639 GATCCCCTCCTACATGCTG-TGATCCTACTGCCGCAACCCTCGGTCCAGTCTGAT
* ** * *
16659907 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAGAAATGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAAG-AGCGTTCAGG-ACTGAGC
* ** *** * * *
16659972 CAGTCGGAGAGGTGTAATGCACGAG-CCGAGGATCCGTCCGTCCCCCTCTGTGTGCTGTCA-GTC
64 CGGTCGGAGAGGCATAATGCGTAAGTCAG-GGATCGGCCCGTCCCCCTCTGTGTGCTG-CAGGTC
*
16660035 CCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
127 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
16660100 ACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
192 ACCCACGAAATGGGCGTGTGGGCGCTCAGCC-GTCGGAGAGGCAGAATGCGCAAGCAGGGGATCG
* * * * * * * *
16660165 GCCCAGTCCCCCCTGCATGCTATCGATCCTACTGTCACAACACTCGATCCAGTCTAATCTTAAAC
256 GCCCAGTCCCCCCTGCATGCTCT-GATCATGCTGCCACAACCCTCGGTCCATTC-AATCTTAGAC
* *
16660230 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC-TCTGTATGCCTAAGCCAACCCATGAAA
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAAA
* ** * * ** * *
16660294 CGAGCGTGCGGG-CGCTCAATCGGTCGGAGAGGCA-AGTGCATAAGTTGGGGATC-AGCCCGATC
383 CGAGCGTGCGGGCCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA-CTCGGTC
* * *
16660356 CCCCTCTGCGTGCTG-TCAATCCTATTGCCGGTCCTACTACC
447 CCCC-CTGCGTGCTGCT-GATCCTACTGCTGGTCCTACTACC
16660397 AGAACCCTCT
Statistics
Matches: 991, Mismatches: 171, Indels: 51
0.82 0.14 0.04
Matches are distributed among these distances:
695 31 0.03
696 305 0.31
697 648 0.65
698 7 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (692 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAAGAGCGTTCAGGACTGAGCCG
GTCGGAGAGGCATAATGCGTAAGTCAGGGATCGGCCCGTCCCCCTCTGTGTGCTGCAGGTCCCGC
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAATGGGCGTGTGGGCGCTCAGCCGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCA
GTCCCCCCTGCATGCTCTGATCATGCTGCCACAACCCTCGGTCCATTCAATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCTGCG
TGCTGCTGATCCTACTGCTGGTCCTACTACCGCAAGCCTCGGTCCAGTCCGAACTTAAACTGGGA
ATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAAACGAGCG
TGAGAGCAATCAGCCGACCAGAAAGGCAGAATGCACAAGCCGGGGACAAGCTCGATCCCCTCCTA
CATGCTGTGATCCTACTGCCGCAACCCTCGGTCCAGTCTGAT
Found at i:16660136 original size:158 final size:157
Alignment explanation
Indices: 16659749--16660249 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 157
16659739 ACTCCATATA
* ** **
16659749 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGAAGGTAATCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGTGTGCGGGTGCTCAGC
* * * *
16659814 CAGTCGGAAAGGCAGAATGCACGAGCCGGGGACCAATCCGGTCCCCCCTGCATGCTGTTGATCCT
65 CAGTCGGAGAGGCAGAATGCACGAGCCGAGGACCAATCCGGTCCCCCCTGCATGCTGTAGATCCC
* * *
16659879 ACTGCCGCAACCCTCGGTCCGGTCTGAT
130 ACTGCCACAACCCTCAGTCCGGTCTGAG
* * * * *
16659907 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAGAAATGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAG-AGTGTGCGGGTGCTCAG
* * **
16659971 CCAGTCGGAGAGG-TGTAATGCACGAGCCGAGGATCC-GTCC-GTCCCCCTCTGTGTGCTGTCAG
64 CCAGTCGGAGAGGCAG-AATGCACGAGCCGAGGA-CCAATCCGGTCCCCC-CTGCATGCTGT-AG
* *
16660033 -TCCCGCTGCCACAACCCTCAGTCCGG-CTGGGG
125 ATCCCACTGCCACAACCCTCAGTCCGGTCT-GAG
* * * * *
16660065 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGTGTGCGGGTGCTCAGC
* * * * * * *** * * * *
16660130 CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCCT
65 CAGTCGGAGAGGCAGAATGCACGAGCCGAGGACCAATCCGGTCCCCCCTGCATGCTGTAGATCCC
* * * * *
16660195 ACTGTCACAACACTC-GATCCAGTCTAAT
130 ACTGCCACAACCCTCAG-TCCGGTCTGAG
*
16660223 CTTAAAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16660250 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
157 16 0.06
158 241 0.89
159 15 0.06
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGTGTGCGGGTGCTCAGCC
AGTCGGAGAGGCAGAATGCACGAGCCGAGGACCAATCCGGTCCCCCCTGCATGCTGTAGATCCCA
CTGCCACAACCCTCAGTCCGGTCTGAG
Found at i:16660259 original size:26 final size:26
Alignment explanation
Indices: 16660223--16660275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16660213 CCAGTCTAAT
16660223 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
16660249 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
16660275 C
1 C
16660276 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:16660969 original size:26 final size:26
Alignment explanation
Indices: 16660933--16660985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16660923 CCAGTTCGAT
*
16660933 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16660959 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16660985 C
1 C
16660986 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16661070 original size:343 final size:346
Alignment explanation
Indices: 16660033--16661070 Score: 1083
Period size: 343 Copynumber: 2.9 Consensus size: 346
16660023 GTGCTGTCAG
*
16660033 TCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
16660098 CAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGAT
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGC-CGGGAT
* * * * * * * * *
16660163 CGGCCC-AGTCCCCCCTGCATGCTA-TCGATCCTACTGTCACAACACTCGATCCAG-TCTAATCT
130 CGGCCCGA-TCCCGCTTACGTGCTAGCCGATCCTACTATCGCAACCCTCGATCCAGTTC-GATCT
* *
16660225 TAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGCCAACCCAT
193 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGCCAACCCAT
* * * * *
16660290 GAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCA-AGTGCATAAGTTGGGGATCAG-CCCG
258 GAAACGAGCGTGCGGGCGCTC-AGCGGTCGGAGAGGCAGAATGCATAAG-TCGGGATCGGTTCCG
* *
16660353 ATCCCCCTCTGCGTGCTGTCAATCCTATTGCCGG
321 -TCCCCCTCTAC--GC-GT--ATCC--TTGCCGA
* * * * *
16660387 TCCTACTACCAGAACCCTCTGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * ** *
16660452 CAACCCATGAAATGAGTGTGCGGCCGCTCAGCCAACCAGAGAGGTAGAATGCGCAAGCCGAGGAT
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCG-GGAT
* * * * * * *
16660517 CGGCTCGATCCCACCCTGCGTGCTATCGATCCTACTGCTGGTCCTGCTACCGTAACCCTCGATCC
130 CGGCCCGAT----CCC-GC-T--TA-CG-TGCTA--GCCGATCCTACTATCGCAACCCTCGATCC
* * * *
16660582 AGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTA
183 AGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTA
* * * *
16660646 AGCCAACCCATGAAACAAGCGAGCGGGCGCTTAGTCGATCGGAGAGGCAGAATGCATAAGTCGAG
247 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGTCGGAGAGGCAGAATGCATAAGTCG-G
* *
16660711 GATCGGTTCAGTCCCCCTCTAC-C-T-T-C-TGTCGA
310 GATCGGTTCCGTCCCCCTCTACGCGTATCCTTGCCGA
* * * *
16660743 TCCCACTGCCACAACCCTCGGTCTGACTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** *
16660808 CAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGAT
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCC-GGGAT
* *
16660873 CGGCCCGATCTCGCTTACGTGC-AGCCGATCCTACTATCGCAACCCCCGATCCAGTTCGATCTTA
130 CGGCCCGATCCCGCTTACGTGCTAGCCGATCCTACTATCGCAACCCTCGATCCAGTTCGATCTTA
*
16660937 GATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGA
195 GATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGCCAACCCATGA
* * * * * ** * *
16661002 AATGAGGGTGCGAGCGCTCAGCAGGCCGGAGAGGTAGAATGCGCAAGCCGGGAATGGGTTCCGTC
260 AACGAGCGTGCGGGCGCTCAGC-GGTCGGAGAGGCAGAATGCATAAGTCGGG-ATCGGTTCCGTC
16661067 CCCC
323 CCCC
16661071 CCTGCGTGCT
Statistics
Matches: 565, Mismatches: 94, Indels: 61
0.78 0.13 0.08
Matches are distributed among these distances:
342 4 0.01
343 143 0.25
345 1 0.00
346 2 0.00
347 2 0.00
348 2 0.00
350 1 0.00
351 2 0.00
352 2 0.00
353 1 0.00
354 119 0.21
355 1 0.00
356 124 0.22
357 1 0.00
358 3 0.01
359 2 0.00
360 1 0.00
362 1 0.00
363 2 0.00
364 4 0.01
365 1 0.00
366 1 0.00
367 116 0.21
368 27 0.05
369 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (346 bp):
TCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGATC
GGCCCGATCCCGCTTACGTGCTAGCCGATCCTACTATCGCAACCCTCGATCCAGTTCGATCTTAG
ATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGCCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGCGGTCGGAGAGGCAGAATGCATAAGTCGGGATCGGTTCCGTCCCC
CTCTACGCGTATCCTTGCCGA
Found at i:16661344 original size:196 final size:194
Alignment explanation
Indices: 16660929--16661720 Score: 652
Period size: 196 Copynumber: 4.2 Consensus size: 194
16660919 CGATCCAGTT
* * * *
16660929 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
1 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
16660994 ACCCATGAAATGAGGGTGCGAGCGCTCAG-CAGGCCGGAGAGGTAGAATGCGCAAGCC-GGGAAT
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-ACTGGAGAGGCAGAATGCGCAAGCCAAGG-AT
** ** * * * *
16661057 GGGTTCCG-TCCCCCCCTGCGTGCTACCGATCCTGCTGCTAGTCCTGCTGTCGCAACCCTT-GGT
128 CAGACCCGATCCCACCCTGCATGCTGCCGATCCTG-TGCT-GTCCTGCTCT-GCAA-CCTTCGGT
*
16661120 CCGATC
189 CTGATC
* * *
16661126 CGATCTTAGATTGAGAATGAACTCCGTATGATTAGACATGGAATGAACTCCGTATGCCTATG-CT
1 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTC-
* * * *
16661190 AACCCGCGAAATGAGCGTGCGGGTGCTCAGCCAACTAGAGAGGCA-AATGCGCAAGCCAAGGATC
64 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATC
*
16661254 AG-CCCGATCCCACCCTGCATGCTGTCGATCCTGTTGCTGGTCCTGCTACTGCAACCTTCGGTCT
129 AGACCCGATCCCACCCTGCATGCTGCCGATCCTG-TGCT-GTCCTGCT-CTGCAACCTTCGGTCT
16661318 GATC
191 GATC
* * * * *
16661322 TGATCTTAGACCGAGAATGAACTCTGTATGCTTAGACTGGGATGAACTCCTTATGCCTAAGTCAA
1 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAA
* * * *** * * * **
16661387 CCTACGAAACGAGCGTGCGGGCACTCATCCGGTTGGAGAGGTAGAATACGAAAGCCGGGGATC-G
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCAG
* * * *
16661451 ACCCGATCCC-CCTTGCATGCTGCCAAT-C----CTG--CTG--CTGCAACCCTCAGTCTGATC
131 ACCCGATCCCACCCTGCATGCTGCCGATCCTGTGCTGTCCTGCTCTGCAACCTTCGGTCTGATC
* * * *
16661505 CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
1 CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCA
* * * * * ** *
16661570 ACCAACGAAACGAGCATGCGGGTGCTCAGCCGACTGGAGAGGCAGAAAGCATAAGCCAAGGACCA
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCA
* * * * *
16661635 G-CCCAATCCCTA-CCTGCGTGCTGTCGA---T-T-CTG--CTAC-C-GCAACCCTCGGTCTGAT
130 GACCCGATCCC-ACCCTGCATGCTGCCGATCCTGTGCTGTCCTGCTCTGCAACCTTCGGTCTGAT
16661689 C
194 C
*
16661690 CGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGATCTTAGACTGAGAATGAACTCCGTATGC
16661721 CTAAGTCAAC
Statistics
Matches: 493, Mismatches: 85, Indels: 46
0.79 0.14 0.07
Matches are distributed among these distances:
183 50 0.10
184 81 0.16
185 64 0.13
186 4 0.01
188 1 0.00
189 2 0.00
194 1 0.00
195 77 0.16
196 119 0.24
197 91 0.18
198 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (194 bp):
CGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCAAGGATCAG
ACCCGATCCCACCCTGCATGCTGCCGATCCTGTGCTGTCCTGCTCTGCAACCTTCGGTCTGATC
Found at i:16661547 original size:26 final size:26
Alignment explanation
Indices: 16661509--16661561 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16661499 CTGATCCAAT
*
16661509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16661535 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16661561 C
1 C
16661562 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16661711 original size:185 final size:183
Alignment explanation
Indices: 16661108--16661720 Score: 536
Period size: 184 Copynumber: 3.3 Consensus size: 183
16661098 TCCTGCTGTC
* * * * *
16661108 GCAACCCTTGGTCCGATCCGATCTTAGATTGAGAATGAACTCCGTATGATTAGACATGGAATGAA
1 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAA
* * * ** * * ** * *
16661173 CTCCGTATGCCTATGCTAACCCGCGAAATGAGCGTGCGGGTGCTCAGCCAACTAGAGAGGCA-AA
65 CTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCGACTGGAGAGGCAGAA
* * * * * **
16661237 TGCGCAAGCCAAGGATC-AGCCCGATCCCACCCTGCATGCTGTCGATCCTGTTGCTGGTCCTGCT
130 TACGAAAGCCAAGGACCGA-CCCAATCCC-CCTTGCATGC--T-G---C-----C-AATCCTGCT
16661301 ACT
181 ACT
* * * * * *
16661304 GCAACCTTCGGTCTGATCTGATCTTAGACCGAGAATGAACTCTGTATGCTTAGACTGGGATGAAC
1 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAAC
* * * * * ** *
16661369 TCCTTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCACTCATCCGGTTGGAGAGGTAGAAT
66 TCCATATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCGACTGGAGAGGCAGAAT
** * * *
16661434 ACGAAAGCCGGGGATCGACCCGATCCCCCTTGCATGCTGCCAATCCTGCTGCT
131 ACGAAAGCCAAGGACCGACCCAATCCCCCTTGCATGCTGCCAATCCTGCTACT
* *
16661487 GCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
1 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAA
**
16661552 CTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCGGGTGCTCAGCCGACTGGAGAGGCAGAA
65 CTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCGACTGGAGAGGCAGAA
* * * * *
16661617 -A-GCATAAGCCAAGGACC-AGCCCAATCCCTACC-TGCGTGCTGTCGATTCTGCTACC
130 TACG-A-AAGCCAAGGACCGA-CCCAATCCC--CCTTGCATGCTGCCAATCCTGCTACT
16661672 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
16661721 CTAAGTCAAC
Statistics
Matches: 347, Mismatches: 62, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
182 1 0.00
183 60 0.17
184 81 0.23
185 64 0.18
186 2 0.01
189 1 0.00
192 1 0.00
193 1 0.00
195 64 0.18
196 71 0.20
197 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (183 bp):
GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAAC
TCCATATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCGACTGGAGAGGCAGAAT
ACGAAAGCCAAGGACCGACCCAATCCCCCTTGCATGCTGCCAATCCTGCTACT
Found at i:16662023 original size:158 final size:155
Alignment explanation
Indices: 16661535--16662030 Score: 403
Period size: 159 Copynumber: 3.1 Consensus size: 155
16661525 ACTCCGTATG
*
16661535 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCG-GGTGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-CATGCGAGG-GCTCAG
* * ** * * * * *
16661599 CCGACTGGAGAGGCAGAAAGCATAAGCCAAGGACCAGCCCAATCCCTACCTGCGTGCTGTCGATT
64 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCAATCCC-CCCTGCGTGCTATCGA-T
* * *
16661664 CTGCTACCGCAACCCTCGGTCTGATCCGAT
126 CTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * * * * *
16661694 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAATGGGCATTCAAGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CGACATGCGAGGGCTCAG
* * * * * * * *
16661758 CCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGACCTATTCCCCCTCTACGTGC-AGCCGGT
64 CCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCAATCCCCC-CTGCGTGCTA-TC-G-
* ** * * *
16661822 ATC-GCTGCCACAACCCTCTATCCGG-CTCAGG
124 ATCTGCTGCCGCAACCCTCGGTCTGGTCTGA-T
* * *
16661853 CTT-GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGAGGGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GACATGCGAGGGCTCAGC
* * *
16661917 CGACCGAAGAGGCAGAATGCGCAAGCCTGGGATCGGCCCAGTCCCCCCTGCATGCTATCGATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCAATCCCCCCTGCGTGCTATCGAT-CT
*
16661982 GCTGTCGCAACCCTCGGTCTGGTCTGAT
128 GCTGCCGCAACCCTCGGTCTGGTCTGAT
16662010 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
16662031 GCATGCTTAG
Statistics
Matches: 255, Mismatches: 64, Indels: 37
0.72 0.18 0.10
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 28 0.11
158 108 0.42
159 109 0.43
160 5 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGACATGCGAGGGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCAATCCCCCCTGCGTGCTATCGATCTGCT
GCCGCAACCCTCGGTCTGGTCTGAT
Found at i:16662062 original size:26 final size:26
Alignment explanation
Indices: 16662010--16662062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16662000 CTGGTCTGAT
*
16662010 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
*
16662036 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCACATG
16662062 C
1 C
16662063 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16662407 original size:26 final size:26
Alignment explanation
Indices: 16662378--16662430 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16662368 CCAATCTTAT
16662378 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
16662404 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
16662430 C
1 C
16662431 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16662541 original size:184 final size:184
Alignment explanation
Indices: 16662219--16662588 Score: 431
Period size: 184 Copynumber: 2.0 Consensus size: 184
16662209 TCCGACTGGC
** *
16662219 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTGAACCCATAAAAAGAACGTGCGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAACGTGCGGGCGCTCAA
* * * *
16662284 CCGGCCAAAGAGGCAAAATGCGTAAGCCGAGGATCAACCCAGTCCCCCCTACATGCTGCTGGTCC
66 CCGACCAAAGAGGCAAAATGCGCAAGCCGAGGACCAACCCAGTCCCCCCTACATGCTGCTGATCC
* ** *
16662349 TACTGTCACAACCCTC-GATCCAATCTTATCTTAGACTGGGAATGAACTCCATAT
131 TACTGTCACAAACCTCAG-TCCAATCCGATCTTAGACTGAGAATGAACTCCATAT
* * **
16662403 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAACGTGCGGGCGCTCAA
* *** * * * * *
16662468 TCGACTGGAGAGGCAGAATGCGCAAGTCGAGGACCGACCC-GATCCCCCCTGCATGTTG-TCGAT
66 CCGACCAAAGAGGCAAAATGCGCAAGCCGAGGACCAACCCAG-TCCCCCCTACATGCTGCT-GAT
* *** *
16662531 CCTGCTGTCACAAACCTCAGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTAT
129 CCTACTGTCACAAACCTCAGTCCAATCCGATCTTAGACTGAGAATGAACTCCATAT
16662587 GC
1 GC
16662589 CTAAGCCAAC
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
183 2 0.01
184 151 0.98
185 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAAGAACGTGCGGGCGCTCAA
CCGACCAAAGAGGCAAAATGCGCAAGCCGAGGACCAACCCAGTCCCCCCTACATGCTGCTGATCC
TACTGTCACAAACCTCAGTCCAATCCGATCTTAGACTGAGAATGAACTCCATAT
Found at i:16662749 original size:150 final size:156
Alignment explanation
Indices: 16662404--16662781 Score: 439
Period size: 150 Copynumber: 2.4 Consensus size: 156
16662394 ACTCCATATG
* * * *
16662404 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAG
* ** * * * *
16662468 TCGACTGGAGAGGCAGAATGCGCAAGTCGAGGACCGACCCGATCCCCCCTGCATGTTGTCGATCC
65 TCGGCCAGAGAGGCAGAAT-CGCAAG-CGAAGACCGACCCAATCCCCCCTGCATGCTGTCAATCC
* *
16662533 TGCTGTCACAAACCTCAGTCTGGTCCGAT
128 TGCTGTCACAAACCTCAGTCCGCTCCGAT
**
16662562 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTACGGGTGCTCAGT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAGT
* *
16662627 CGGCCAGAGAGGCAGAAT-GC-A-C-AAG-CC-ACCCAATCCCTCCTGCGTGCTGTCAATCCTGC
66 CGGCCAGAGAGGCAGAATCGCAAGCGAAGACCGACCCAATCCCCCCTGCATGCTGTCAATCCTGC
* * * *
16662686 TG-CTGCAACCCTCTGTCCGCTCTGAT
131 TGTC-ACAAACCTCAGTCCGCTCCGAT
* * * *
16662712 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTCCGAGTGCTCAGT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAGT
16662777 CGGCC
66 CGGCC
16662782 GAAAAGGTCG
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
149 1 0.01
150 109 0.57
151 2 0.01
152 2 0.01
153 1 0.01
155 1 0.01
156 2 0.01
157 2 0.01
158 71 0.37
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.20
Consensus pattern (156 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGTGCTCAGT
CGGCCAGAGAGGCAGAATCGCAAGCGAAGACCGACCCAATCCCCCCTGCATGCTGTCAATCCTGC
TGTCACAAACCTCAGTCCGCTCCGAT
Found at i:16663245 original size:196 final size:196
Alignment explanation
Indices: 16662903--16663339 Score: 617
Period size: 196 Copynumber: 2.2 Consensus size: 196
16662893 GGGCTTAGAT
* * * *
16662903 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGACGCTCAACCGACCGG
1 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGACACTCAACCGACCGG
* ** *
16662968 AGAGGCAGAATGCACAAGCGGGGGATCGGCCCGGTCCCCCCTACATGCTGCCAATCTTGCTGCTG
66 AGAGGCAGAATGCACAAGCCGAAGATCGGCCCGGTCCCCCCTACATGCTGCCAATCATGCTGCTG
* ** *
16663033 GTCCTGCTGCCGCAACCCTCGAT-TTGATCCGATCTTAGATTGGGAATGAACTCCATATGCTTAA
131 GTCCTACTGCCGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAA
16663097 AC
195 AC
*
16663099 ATGGAATGAACTTCGTATGCCTAAGCCAACCTATGAAACGAGCATAC-GAGCACTCAACCGACCG
1 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGA-CACTCAACCGACCG
* * * * *
16663163 GAGAGGTAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCATGCTGCT
65 GAGAGGCAGAATGCACAAGCCGAAGATCGGCCCGGTCCCCCCTACATGCTGCCAATCATGCTGCT
* * *
16663228 GGTCCTACTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAG
130 GGTCCTACTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAA
16663293 AC
195 AC
** * *
16663295 ATGGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCAT
1 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCAT
16663340 GTGGGTGCTC
Statistics
Matches: 213, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
195 2 0.01
196 210 0.99
197 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.19
Consensus pattern (196 bp):
ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGACACTCAACCGACCGG
AGAGGCAGAATGCACAAGCCGAAGATCGGCCCGGTCCCCCCTACATGCTGCCAATCATGCTGCTG
GTCCTACTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAA
C
Found at i:16663381 original size:196 final size:195
Alignment explanation
Indices: 16662903--16663423 Score: 526
Period size: 196 Copynumber: 2.7 Consensus size: 195
16662893 GGGCTTAGAT
** * * * * * *
16662903 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCG-GACGCTCAACCGACCG
1 ATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAG-CACTCAACCGACCA
* * * * * * * * * *
16662967 GAGAGGCAGAATGCACAAGCGGGGGATCGGCCCGGTCCCCCCTACATGCTGCCAATCTTGCTGCT
65 AAGAGACAAAAAGCGCAAGC-CGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCATGCTGCT
* ** *
16663032 GGTCCTGCTGCCGCAACCCTCGATTTGATCCGATCTTAGATTGGGAATGAACTCCATATGCTTAA
129 GGTCCTACTGCCGCAACCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAA
16663097 AC
194 AC
** * * **
16663099 ATGGAATGAACTTCGTATGCCTAAGCCAACCTATGAAACGAGCATACGAGCACTCAACCGACCGG
1 ATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAACCGACCAA
** * * *
16663164 AGAGGTAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCATGCTGCTG
66 AGAGACAAAAAGCGCAAGCCG-AGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCATGCTGCTG
* * *
16663229 GTCCTACTGTCGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAG
130 GTCCTACTGCCGCAACCCTCGAT-CAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAA
16663293 AC
194 AC
* ** * ** * *
16663295 ATGGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAGCC-AGTCA
1 ATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAACCGA-CCA
* * * *
16663359 AAGAGACAAAAAGCGTAAGCCGAGCATCGACCCGGTCCCCTCCTGCGTGCTGTCAATCCTGCTGC
65 AAGAGACAAAAAGCGCAAGCCGAG-ATCGGCCCGGTCCCC-CCTGCGTGCTGCCAATCATGCTGC
16663424 CGCAACCTTC
Statistics
Matches: 276, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
195 4 0.01
196 249 0.90
197 23 0.08
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (195 bp):
ATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAACCGACCAA
AGAGACAAAAAGCGCAAGCCGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCATGCTGCTGG
TCCTACTGCCGCAACCCTCGATCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAAC
Found at i:16663582 original size:159 final size:159
Alignment explanation
Indices: 16663288--16663790 Score: 414
Period size: 159 Copynumber: 3.2 Consensus size: 159
16663278 ACTCCCTATG
* * * * * **
16663288 CTTAGACAT-GGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAAC-GAGCATGTGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTG-GCGTGCGGGCACTCA
* * * * * * * * *
16663351 GCC-AGTC-AAAGAGACAAAAAGCGTAAGCCGAGCATCGACCCGGT-CCCCTCCTGCGTGCTGTC
64 GCCGA-TCGAAA-AGGCAGAACGAGCAAGCCGGGGATCGACCCGATCCCCCT-CTACGTGCTGTC
* *
16663413 AATCCTGCTGCCGCAACCTTCGGTCCGGTCCGAT
126 GATCCTGCTGCCGCAACCTTCGATCCGGTCCGAT
* * * *
16663447 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACG-AAGTGAGCGTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTG-GCGTGCGGGCACTCAG
* * * *
16663511 CCGATCGAAAAGGCATAATGAGCAAGCCGGGGATCGATCCGATCCCCCTCTACGTGCTGTCGGTC
65 CCGATCGAAAAGGCAGAACGAGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATC
* * * * ** *
16663576 CCGCTGCCACAACCCTCAATCCGGCTGGGGT
130 CTGCTGCCGCAACCTTCGATCCGG-TCCGAT
* ** *
16663607 -TTAAACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACTGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTGGCGTGCGGGCACTCAG
* * * * * * * *
16663670 TCGATCGGAGAGGCAGAACGCGTAAGTCGGGGATCGGCCCGATCCCCCT-TACGTGTTG-CTGAT
65 CCGATCGAAAAGGCAGAACGAGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTC-GAT
* * * *
16663733 CCTGCTACCGCAACCTTTGTTCCAGTCCGAT
129 CCTGCTGCCGCAACCTTCGATCCGGTCCGAT
16663764 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
16663791 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 51 0.19
159 195 0.73
160 17 0.06
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTGGCGTGCGGGCACTCAGC
CGATCGAAAAGGCAGAACGAGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCC
TGCTGCCGCAACCTTCGATCCGGTCCGAT
Found at i:16663930 original size:184 final size:184
Alignment explanation
Indices: 16663618--16664074 Score: 510
Period size: 184 Copynumber: 2.5 Consensus size: 184
16663608 TAAACATGGA
* * * * * * * * *
16663618 ATGAACTCCATATGCCTAAGCCAACCCATGAAACTG-GCGTGCGGGC-ACTCAGTCGATCGGAGA
1 ATGAACTCCGTACGCCTAAGTCAACCCA-CAAAATGAGCGTGCGGACGA-TCAGCCAACCGGAGA
* * * *
16663681 GGCAGAACGCGTAAGTCGGGGATCGGCCCGATCCCCCTTACGTGTTGCTGATCCTGCTACCGCAA
64 GGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTACGTGCTGCTGATCCTGCTACCGCAA
* * * *
16663746 CCTTTGTTCCAGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGG
129 CCGTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGG
* * * * *
16663802 ATGAACTCCGTACGCCTAAGTTAACCCACGAAATGAGTGTGCGG-TGATCAGCCAGCCGGAGAGG
1 ATGAACTCCGTACGCCTAAGTCAACCCACAAAATGAGCGTGCGGACGATCAGCCAACCGGAGAGG
* * * * * *
16663866 CAGAATACGCAAGTCGGGGATCGACTCCGGTCCCCTTTGCGTGCTG-TCGATCCTGTTGCCGCAA
66 CAGAATGCGCAAGTCGGGGATCGAC-CCGATCCCCCTTACGTGCTGCT-GATCCTGCTACCGCAA
*
16663930 CCGTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGG
129 CCGTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGG
* * * *
16663986 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGACGCTCAGCCAACCAGAGAGA
1 ATGAACTCCGTACGCCTAAGTCAACCCACAAAATGAGCGTGCGGACGATCAGCCAACCGGAGAGG
* * *
16664051 CAGGATGCGCAAGCCGGAGATCGA
66 CAGAATGCGCAAGTCGGGGATCGA
16664075 ACGGGTGGTA
Statistics
Matches: 226, Mismatches: 41, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
183 39 0.17
184 150 0.66
185 37 0.16
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (184 bp):
ATGAACTCCGTACGCCTAAGTCAACCCACAAAATGAGCGTGCGGACGATCAGCCAACCGGAGAGG
CAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTACGTGCTGCTGATCCTGCTACCGCAACC
GTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGG
Found at i:16663984 original size:26 final size:26
Alignment explanation
Indices: 16663948--16664000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16663938 CCGGTCCAAT
*
16663948 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16663974 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16664000 C
1 C
16664001 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16665410 original size:26 final size:25
Alignment explanation
Indices: 16665359--16665410 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16665349 CCGATCCGAT
*
16665359 CTTAGACTGGAATAAACTCCATATG
1 CTTAGACTGGAATAAACTCCACATG
* *
16665384 CTTAGACTAGGGATGAACTCCACATG
1 CTTAGACT-GGAATAAACTCCACATG
16665410 C
1 C
16665411 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCACATG
Found at i:16666031 original size:159 final size:158
Alignment explanation
Indices: 16665739--16666232 Score: 523
Period size: 159 Copynumber: 3.1 Consensus size: 158
16665729 GCTTAAACAT
*
16665739 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTG-CCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GACCGGA
* * * * * *
16665803 GAGGTAGAATGTGCAAGCCGGGGATCGGCCCGAT-CGCCTCCTGTGTGCTGTCGATCTTGCTGCC
65 GAGGCAGAATGTGCAAGCCAGGGATCGG-CTGATCCCCCT-CTGCGTGCTGTCGATCTCGCTGCC
* *
16665867 GCAACCCTCGGTCTGATCTGATCTTAGACTG
128 ACAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * * * *
16665898 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCGTTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * *
16665963 AGGCATAATGCGCAAGCCAGGGATCGGCTTGATCCCCCTCTGCGTGCTATCGGTCTCGCTGCTAC
66 AGGCAGAATGTGCAAGCCAGGGATCGGC-TGATCCCCCTCTGCGTGCTGTCGATCTCGCTGCCAC
* ** *
16666028 AACCCTTGGTCTGGT-TGGGGCTTGGACAT-
130 AACCCTCGGTCTGGTCT-GATCTTAGAC-TG
* * * * * *
16666057 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCAATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * *
16666122 AGGCAGAATGTGCAAGCCAGGGATTGGCTCAGTCTCCC-CTACATGCTGTCGATC-CTACTGCCA
66 AGGCAGAATGTGCAAGCCAGGGATCGGCTGA-TCCCCCTCTGCGTGCTGTCGATCTC-GCTGCCA
* * *
16666185 CAACCCTCAGTCCGGTCCGATCTTAGACTG
129 CAACCCTCGGTCTGGTCTGATCTTAGACTG
16666215 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16666233 TTAGATTGGG
Statistics
Matches: 271, Mismatches: 55, Indels: 19
0.79 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 59 0.22
159 205 0.76
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGTGCAAGCCAGGGATCGGCTGATCCCCCTCTGCGTGCTGTCGATCTCGCTGCCACA
ACCCTCGGTCTGGTCTGATCTTAGACTG
Found at i:16666257 original size:26 final size:26
Alignment explanation
Indices: 16666206--16666258 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666196 CCGGTCCGAT
*
16666206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16666232 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16666258 C
1 C
16666259 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16668294 original size:26 final size:26
Alignment explanation
Indices: 16668258--16668308 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16668248 CCGGTCCGAT
16668258 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
16668284 CTTAGATTGGGGATGAACTTTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
16668309 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16669554 original size:26 final size:26
Alignment explanation
Indices: 16669516--16669568 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16669506 TCGGTTTGAT
*
16669516 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
16669542 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCATATG
16669568 C
1 C
16669569 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16671270 original size:26 final size:26
Alignment explanation
Indices: 16671234--16671286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16671224 CTGATCTGAT
*
16671234 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16671260 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16671286 C
1 C
16671287 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16671702 original size:184 final size:184
Alignment explanation
Indices: 16671443--16671812 Score: 537
Period size: 184 Copynumber: 2.0 Consensus size: 184
16671433 TCCGGTTGGG
** * **
16671443 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCAAGCGCTCAG
*
16671508 CCGGCCGGAGAGGCAAAATGCGCAAG-CTGGGGATCAGCTCGATCCCCCCTACGTGCTGCTGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGTC-GGGGATCAGCTCGATCCCCCCTACGTGCTGCTGATC
* * *
16671572 TTGCTACCGTAACCCTCGGTTCAG-TCTGATCTTAGACTAGGAATGAACTCCGTAT
130 CTGCTACCGCAACCCTCGG-TCAGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * *
16671627 GCTTAGGCATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCAAGCGCTCAG
* * * ** *
16671692 CCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGATCCCCCCTGTGTGCTGTTGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCTCGATCCCCCCTACGTGCTGCTGATCC
*
16671757 TGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCGGTCAGATCCGATCTTAGACTAGGAATGAACTCCGTAT
16671811 GC
1 GC
16671813 CAAAGTCAAC
Statistics
Matches: 165, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
183 3 0.02
184 161 0.98
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCAAGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCTCGATCCCCCCTACGTGCTGCTGATCC
TGCTACCGCAACCCTCGGTCAGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:16671982 original size:159 final size:157
Alignment explanation
Indices: 16671637--16672129 Score: 537
Period size: 158 Copynumber: 3.1 Consensus size: 157
16671627 GCTTAGGCAT
* * * ** *
16671637 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCAAGCGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAG
* * * * * *
16671702 AGGCAGAATGTGCAAG-TCGGGGATCGGCTCGATCCCCCCTG-TGTGCTGTTGATCCTGCTACCG
66 AGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCTC-GATGTGCTGTCGATCCTGCTGCCG
* * *
16671765 CAACCCTCGGTCCGATCCGATCTTAGACTA
129 CAACCCTCGGTCCGGT-TGAGCTTAGACTA
* * * * * *
16671795 GGAATGAACTCCGTATGCC-AAAGTCAACCCATGAAATGAGCGTGCGGGTGTTGAGCCGGTCGAA
1 GGAATGAACTCCGTATGCCTAAA-CCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGA
* ** *
16671859 GAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCTCTCGATGTGCTGTCGATCCCACTGCCA
65 GAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCC-CTCGATGTGCTGTCGATCCTGCTGCCG
* *
16671924 CAACCCTAGGTCCGGTTGGGGCTTAGAC-A
129 CAACCCTCGGTCCGGTT-GAGCTTAGACTA
* ** *
16671953 TGGACTGAACTCCGTATGCCTAAACCAACCCACAAAATAAGCGTGCGGGCGCTCAGCCGATCGGA
1 -GGAATGAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGA
* ** *
16672018 GAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCTCCC-CTACATGCTGTCGATCCTGTTGCCG
65 GAGGCAGAATGCGCAAGCTGGGGATCGACCCGATC-CCCTCGATGTGCTGTCGATCCTGCTGCCG
* *
16672082 CAACCCTCGGTCCGGTCTGATCTTAGACTG
129 CAACCCTCGGTCCGGT-TGAGCTTAGACTA
16672112 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16672130 TTAGACATGG
Statistics
Matches: 275, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 140 0.51
159 128 0.47
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAACCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCTCGATGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCCGGTTGAGCTTAGACTA
Found at i:16672132 original size:26 final size:26
Alignment explanation
Indices: 16672103--16672158 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16672093 CCGGTCTGAT
16672103 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16672129 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16672155 CTTA
1 CTTA
16672159 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16672272 original size:184 final size:184
Alignment explanation
Indices: 16671944--16672313 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
16671934 TCCGGTTGGG
* * ** * *
16671944 GCTTAGACATGGACTGAACTCCGTATGCCTAAACCAACCCACAAAATAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAATAAGCATGCAAGCACTCAA
* *
16672009 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCTCCCCTACATGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACATGCTGTCAATCC
* * * * * *
16672074 TGTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
16672128 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACT-AGCATGCAAGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCA-CAAAATAAGCATGCAAGCACTCA
* * * * * * ***
16672192 ACTG-GCTGGAGAGGCAGAATGTGCAAG-TCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAA
65 ACCGATC-GGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCCTACATGCTGTCAA
16672255 TCCTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
128 TCCTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
16672312 GC
1 GC
16672314 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 2 0.01
184 150 0.96
185 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAATAAGCATGCAAGCACTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACATGCTGTCAATCC
TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:16672533 original size:159 final size:157
Alignment explanation
Indices: 16672128--16672559 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 157
16672118 AACTCCGTAT
* * * * ** ** *
16672128 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACTAGCATGCAAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCGA
* * * *
16672193 CTGGCTGGAGAGGCAGAATGTGCAAGTCGGGGATCGG-CTCGGTCCCCCCTGTGTGCTGTCAATC
66 CCGGC-CGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCT-AGTCCCCCCTGTGTGCTGTCAATC
** * *
16672257 CTGCTACCACAACCCTCGGTCCGATCCGA
129 CCACTACCACAACCCTAGGTCAGATCCGA
* * *
16672286 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTG-TTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCG
* * * * * *
16672349 AGCCGGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCTAGT-CCCTCTCGTTGTGCTGTCG
65 A-CCGGCCG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCT-G-TGTGCTGTCA
* * * *
16672413 ATCCCACTGCCACAACCCTAGGTCTAGCT-GGG
126 ATCCCACTACCACAACCCTAGGTC-AGATCCGA
* * *
16672445 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCAGGAAACGGGCGTGCGGGTGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCGA
* * *
16672510 CCGGCCAGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCCAGTCCCCCCT
66 CCGGCC-GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCT
16672560 ACGTGCTACC
Statistics
Matches: 219, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 9 0.04
158 79 0.36
159 119 0.54
160 12 0.05
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCGA
CCGGCCGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTGTGTGCTGTCAATCCC
ACTACCACAACCCTAGGTCAGATCCGA
Found at i:16672645 original size:26 final size:26
Alignment explanation
Indices: 16672604--16672656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16672594 TCGGTCTGAT
*
16672604 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16672630 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16672656 C
1 C
16672657 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16672741 original size:501 final size:501
Alignment explanation
Indices: 16671439--16672700 Score: 1868
Period size: 501 Copynumber: 2.5 Consensus size: 501
16671429 TCGATCCGGT
*
16671439 TGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGC
* * * *
16671504 TCAGCCGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTACGTGCTGCTG
66 TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCG
* * * *
16671569 ATCTTGCTACCGTAACCCTCGGTTCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGG
131 ATCCTGCTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * *
16671634 CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCAAGCGCTCAGCCGACCG
196 CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAACCGACTG
* **
16671699 GAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGATCCCCCCTGTGTGCTGTTGATCCTGCTACC
261 GAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATCCTGCTACC
*
16671764 GCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCATGA
326 ACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCATGA
* * *
16671829 AATGAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATC
391 AATGAGCGTGCGGGTGTTGAGCCGGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGACCAGATC
* *
16671894 CCTCTCGATGTGCTGTCGATCCCACTGCCACAACCCTAGGTCCGGT
456 CCTCTCGATGTGCTGTCGATCCCACTGCCACAACCCTAGGTCCAGC
* * *
16671940 TGGGGCTTAGACATGGACTGAACTCCGTATGCCTAAACCAACCCACAAAATAAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGC
** * * * *
16672005 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCTCCCCTACATGCTGTCG
66 TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCG
* * * *
16672070 ATCCTGTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
131 ATCCTGCTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * * * * *
16672135 CATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACTAGCATGCAAGCACTCAACTGGCTG
196 CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAACCGACTG
16672200 GAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATCCTGCTACC
261 GAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATCCTGCTACC
*
16672265 ACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
326 ACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCATGA
*
16672330 AATGAGCGTGCGGGTGTTGAGCCGGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCTAG-T
391 AATGAGCGTGCGGGTGTTGAGCCGGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGACC-AGAT
* *
16672394 CCCTCTCGTTGTGCTGTCGATCCCACTGCCACAACCCTAGGTCTAGC
455 CCCTCTCGATGTGCTGTCGATCCCACTGCCACAACCCTAGGTCCAGC
* * * *** *
16672441 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCAGGAAACGGGCGTGCGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGC
* * * *
16672506 TC-GACCGGCCAGAGAGGCAGAATGCGCAAG-TCGAGGATTGGCCC-AGTCCCCCCTACGTGCTA
66 TCAG-CCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGA-TCCCCCCTACGTGCTG
* * *
16672568 CCAATCCTGCTGCCGTAACACTCGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTT
128 CCGATCCTGCTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTT
* * * ** *
16672633 AGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAACCG
193 AGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAACCG
16672697 ACTG
257 ACTG
16672701 AAAAGGCATA
Statistics
Matches: 673, Mismatches: 83, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
500 4 0.01
501 668 0.99
502 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGC
TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCG
ATCCTGCTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCGCTCAACCGACTG
GAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCAATCCTGCTACC
ACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAACCCATGA
AATGAGCGTGCGGGTGTTGAGCCGGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGACCAGATC
CCTCTCGATGTGCTGTCGATCCCACTGCCACAACCCTAGGTCCAGC
Found at i:16674337 original size:26 final size:26
Alignment explanation
Indices: 16674308--16674360 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16674298 CCGGTCCAAT
16674308 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
16674334 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
16674360 C
1 C
16674361 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:16674690 original size:170 final size:171
Alignment explanation
Indices: 16674333--16674701 Score: 372
Period size: 171 Copynumber: 2.2 Consensus size: 171
16674323 AACTCCATAT
* * *
16674333 GCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGTGTGCGGGTGCTCA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCA
* * ** * *
16674397 ACCGGCCGAAGAGGCATAATGTGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
65 ACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCACGATCCCCCTATGCGTGCTGTCGAT
* *
16674462 CCCGCTGCCGGTTCTACTGCCACAACCCTCGGTCTGACTAGG
130 CCCGCTGCCGGTTCTACTACCACAACCCTCGGTCTGACTAGA
* * *
16674504 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGGTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
16674568 GCCGACTGGAGAGGTAGAATGCACAAG-TCGGGGATC-GACATGGTCCCCC-ATGCGTGCTGTCG
65 ACCGACCGAAGAGGCAGAATGCACAAGCT-GGGGATCAG-CACGATCCCCCTATGCGTGCTGTCG
* * ** * * * *
16674630 ATCCTGCTGCTGG-TCTTGTTATCGCAACCCTCGGTCTGATTTGA
128 ATCCCGCTGCCGGTTC-TACTACCACAACCCTCGGTCTGACTAGA
* * *
16674674 TCTTAGACTGGGAATGAACCCCATATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
16674702 TTAGACATGG
Statistics
Matches: 161, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
169 3 0.02
170 70 0.43
171 87 0.54
172 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCACGATCCCCCTATGCGTGCTGTCGATC
CCGCTGCCGGTTCTACTACCACAACCCTCGGTCTGACTAGA
Found at i:16674713 original size:26 final size:26
Alignment explanation
Indices: 16674675--16674727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16674665 CTGATTTGAT
16674675 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
16674701 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCATATG
16674727 C
1 C
16674728 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:16675002 original size:159 final size:158
Alignment explanation
Indices: 16674701--16675203 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 158
16674691 ACCCCATATG
* ** ** *
16674701 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGTACGCTCTG
1 CTTAGAC-TGGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCATTCAG
** * * ** * * * * *
16674765 CCGGTCGGAGAGGTAGAATGCGTAAGTTGGGGATCGGCCCGGATCCCCCTTACGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCAGATCCCCCTTACATGCTGCCGATC
* * *
16674830 CTGCTATCGCAACCCTCAGTCCGATCTGAT
129 CCGCTACCACAACCCTCAGTCCGATCTGAT
* *
16674860 TTTAGACTGGCAATGAACTCCGC-ATGCCTAAGTCAACCCACGAAATGAGCG-GTCGGGCACTT-
1 CTTAGACTGGCAATGAACTCC-CTATGCCTAAGCCAACCCACGAAATGAGCGTG-CGGGCA-TTC
* * * *
16674922 AGCCTACCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCCTAG-TCCCCCTTTGCATGCTGCC
63 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAGCC-AGATCCCCC-TTACATGCTGCC
* **
16674985 -AGTCCCGCTACCACAACCCTCAGTCCG-GCTAGGG
125 GA-TCCCGCTACCACAACCCTCAGTCCGATCT-GAT
*
16675019 CTTAGACAT-GCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCATTCAG
1 CTTAGAC-TGGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCATTCAG
* * * * *
16675083 CCGACCGGAGAGGTAGAATGTGCAAGCCGAGGATCAGCCCGATCCCTCTTACGTGCTGCCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTTACATGCTGCCGATCC
* * * *
16675148 TGCTACCGCAACCCTCAGTCTGATCCGAT
130 CGCTACCACAACCCTCAGTCCGATCTGAT
* *
16675177 CTTAGACTGGAAATGAACTCCATATGC
1 CTTAGACTGGCAATGAACTCCCTATGC
16675204 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 48, Indels: 37
0.77 0.13 0.10
Matches are distributed among these distances:
157 1 0.00
158 75 0.27
159 198 0.71
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCATTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTTACATGCTGCCGATCCC
GCTACCACAACCCTCAGTCCGATCTGAT
Found at i:16675218 original size:26 final size:26
Alignment explanation
Indices: 16675177--16675229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16675167 CTGATCCGAT
16675177 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
16675203 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16675229 C
1 C
16675230 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16675933 original size:26 final size:25
Alignment explanation
Indices: 16675895--16675946 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
16675885 GGCTCAAAAT
16675895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
16675921 CTTAGACAT-GGAATGAACTCGTATG
1 CTTAGAC-TGGGAATGAACTCGTATG
16675946 C
1 C
16675947 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:16676422 original size:158 final size:158
Alignment explanation
Indices: 16675921--16676422 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
16675911 ACTCCGTATG
* *
16675921 CTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * * * ** *
16675985 CGACCGGA-CGGTAGAATGCGCAAGTCGGGGATC-GACCCAGTTCCCCCCCTACGTGCTATCGAT
66 CGATCGGAGAGGTAAAATGCGCAAG-CCGGGATCAG-CCC-GATCCCCCACTGTGTGCTGTCGAT
* ** *
16676048 CCTGCTACCGTAACCCTCAAT-CTGATCTGAT
128 CCTGCTGCCGTAACCCTCGGTCCAGATC-GAT
* * * * ** * *
16676079 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGACCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
16676143 TCGGTCGAAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTGTGCTGTTGGT-
65 TCGATCGGAGAGGTAAAATGCGCAAGCCG-GGATCAGCCCGATCCCCCACTGTGTGCTGTCGATC
** * ** * * **
16676207 CTCGCTGCCACAACCCTTGGTCTGGCTGGGG
129 CT-GCTGCCGTAACCCTCGGTCCAGATCGAT
* *
16676238 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCACTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* **
16676302 CTGATCGGAGAGGTAAAATGCGTAAGCCTGGGATCAGCCCGAT-CGACACTGTGTGCTGTCGATC
66 C-GATCGGAGAGGTAAAATGCGCAAGCC-GGGATCAGCCCGATCCCCCACTGTGTGCTGTCGATC
*
16676366 CTGCTGCCGTAACCCTCGGTCCAGTTCGAT
129 CTGCTGCCGTAACCCTCGGTCCAGATCGAT
16676396 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16676423 TTAGACTAGG
Statistics
Matches: 262, Mismatches: 70, Indels: 24
0.74 0.20 0.07
Matches are distributed among these distances:
157 2 0.01
158 78 0.30
159 158 0.60
160 23 0.09
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGATCGGAGAGGTAAAATGCGCAAGCCGGGATCAGCCCGATCCCCCACTGTGTGCTGTCGATCCT
GCTGCCGTAACCCTCGGTCCAGATCGAT
Found at i:16676437 original size:26 final size:26
Alignment explanation
Indices: 16676396--16676448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16676386 CCAGTTCGAT
16676396 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16676422 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16676448 C
1 C
16676449 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16676797 original size:354 final size:343
Alignment explanation
Indices: 16676079--16676830 Score: 904
Period size: 355 Copynumber: 2.2 Consensus size: 343
16676069 CTGATCTGAT
* * * **
16676079 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGACCGCTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGACCGCTCAAC
*
16676144 CGGTCGAAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTGTGCTGTTGGTCT
66 CGGTCGAAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTGTGCTATTGGTCT
* * * *
16676209 CGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATAGAATGAAATCCCTATGCCTAAGCCAA
* * ** * ** *
16676274 CCCACGAAACGTGCGTGCGGGCACTCAGCTGATCGGAGAGGTAAAATGCGTAAGCCTGGGATCAG
196 CCCACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGTAAAATGCACAAGCCAGGGATCAG
* * * ** *
16676339 CCCGATCGACACTGTGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCCAGTTCGATCTTAGACT
261 CACGATCCACACTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCAGTTCGATCTTAGACT
*
16676404 GGGAATGAACTCCGTATG
326 GGGAATGAACCCCGTATG
* * **
16676422 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTACGAGTGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGACCGCTCAAC
* * *
16676487 CGGTCGAAGAGGCATAATGCGCAAGCTGAGGATCAGCTCGGTCCCTCTCTGCATGCTGTCGATCT
66 CGGTCGAAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCC-C-CT-C-TG-TGT-G--CT
* **
16676552 CATTACCGGTC-CTGCTACCACAACCCTCGGTCTGGCTGGGGGTTAGACATAGAATGAAATCTGT
123 -ATT---GGTCTC-GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATAGAATGAAATCCCT
* * * *
16676616 ATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCAACCGGAGAGGTAGAATGTACA
183 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGTAAAATGCACA
* * *
16676681 AGCCAGGGATC-G-ACGATACCCCTA-TGCGTGCTGTCGATCCTGCTGTCACAACCCTCGAT-CT
248 AGCCAGGGATCAGCACGAT-CCAC-ACTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCA
*
16676742 GGTCTGATCTTAGACTGGGAATGAACCCCGTATG
311 GTTC-GATCTTAGACTGGGAATGAACCCCGTATG
* *
16676776 CTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACG
1 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACG
16676831 TGCACTCTAT
Statistics
Matches: 345, Mismatches: 47, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
343 98 0.28
344 1 0.00
345 2 0.01
346 1 0.00
347 2 0.01
348 3 0.01
349 1 0.00
351 2 0.01
352 2 0.01
353 8 0.02
354 110 0.32
355 115 0.33
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (343 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGACCGCTCAAC
CGGTCGAAGAGGCATAATACGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTGTGCTATTGGTCT
CGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATAGAATGAAATCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGTAAAATGCACAAGCCAGGGATCAG
CACGATCCACACTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCAGTTCGATCTTAGACT
GGGAATGAACCCCGTATG
Found at i:16677291 original size:26 final size:26
Alignment explanation
Indices: 16677250--16677302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16677240 CGATTCTGAT
*
16677250 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16677276 CTTAGACTGGCG-ATGAACTCTGTATG
1 CTTAGACTGG-GAATGAACTCTGTATG
16677302 C
1 C
16677303 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16678463 original size:156 final size:156
Alignment explanation
Indices: 16677986--16678478 Score: 433
Period size: 156 Copynumber: 3.1 Consensus size: 156
16677976 AATCCGTATG
* ** * * *
16677986 CTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCACGAGACAAGTGTGCGGGGCGCTCAG
1 CTTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGT-CCGGGCACTCAG
* * * * * *
16678051 TCGACTGGAGAGACAGAATGCGCAAGTCAGGGATC-AGCCCGATCCCCCCAGCGTGCTATCAATC
64 CCGGCCGGAGAGGCAGAATGCGCAAG-CCGGGATCGA-CCCGATCCCCCCAGCGTGCTATCGATC
* *
16678115 CTGCTGCCACAACCCTAT-G-CCTAGTCTGAT
127 CTGCTGCCATAACCCT-TGGTCC-GGTCTGAT
* * * * * * *
16678145 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCATGCGGGCACTGAGC
1 CTTAGAAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCACTCAGC
* * * * * * * *
16678210 CGGCCGAAGAGGCATAATGCGCAAGCCGCGATCGGCCCGATCACCCTCTGCGTGCTATCGGTCCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATC-CCCCCAGCGTGCTATCGATCCT
** * * **
16678275 GCCACCATAA-CCTTCGGTCTGAT-TAGGG
129 GCTGCCATAACCCTT-GGTCCGGTCT-GAT
* * *
16678303 CTTAGAATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAATGGGCGTCCGGGC-CTCAGCC
1 CTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCACTCAGCC
* * *
16678367 GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTTG-TCCCCCCAGCATGCTACCGATCCT
66 GGCCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACC-CGATCCCCCCAGCGTGCTATCGATCCT
* *
16678431 ACTGCCGTAACCCTTGGTCCGGTCTGAT
129 GCTGCCATAACCCTTGGTCCGGTCTGAT
*
16678459 CTTAGACTGGAATGAACTCC
1 CTTAGAATGGAATGAACTCC
16678479 GTATACTTAG
Statistics
Matches: 258, Mismatches: 65, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 79 0.31
157 73 0.28
158 64 0.25
159 42 0.16
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCACTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCAGCGTGCTATCGATCCTGC
TGCCATAACCCTTGGTCCGGTCTGAT
Found at i:16678487 original size:25 final size:26
Alignment explanation
Indices: 16678459--16678508 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16678449 CCGGTCTGAT
16678459 CTTAGACT-GGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16678484 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16678509 GCCTAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16678868 original size:26 final size:26
Alignment explanation
Indices: 16678817--16678869 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16678807 CTAGTTCGAT
*
16678817 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16678843 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16678869 C
1 C
16678870 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16679022 original size:200 final size:199
Alignment explanation
Indices: 16678645--16679093 Score: 523
Period size: 200 Copynumber: 2.3 Consensus size: 199
16678635 TCCGACAAGG
* * * *
16678645 GCTTAGACATGGAATGAACTTCGTATGCCGAAGCCAACCCACGAAACGA--GAGTGCAGTCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGTGCAGGCACTC
* * * * * * **
16678708 AGCCGGTCGGAGAGGCAGAATACGTAAGTCAGGGATCGACCCAGTCCCCCCCTACGGGCTGTCAA
66 AACCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCCTACAGGCTACCAA
* * * * * *
16678773 TCCTTCTGCTGGTCCTGCTATCGCAACCCTCGATCTAGTTCGATCTTAGACTGGGAATGAACTCT
131 TCCTACTGCTGGTCCTGCTATCGCAACCCTCGATCGAGTCCGATCTTAGAATGGGAAAGAACTCC
16678838 ATAT
196 ATAT
*
16678842 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGTG-AGGGCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-A-GTGCA-GGCA
** * ** *
16678906 CTCAACCGGCCGAAGAGGCAGAATGTGCAAGCC-GAGGATCGATCTGGT-CCCCCCTACATGCTA
63 CTCAACCGGCCGAAGAGGCAGAATACGCAAGCCAG-GGATCGACCCAGTCCCCCCCTACAGGCTA
* *
16678969 CCAATCCTACTGCTGGTCCTGCTATCGCAAGCCTCGGTCCGA-TCCGATCTTAGAATGGGAAAGA
127 CCAATCCTACTGCTGGTCCTGCTATCGCAACCCTCGAT-CGAGTCCGATCTTAGAATGGGAAAGA
*
16679033 ACTCCGTAT
191 ACTCCATAT
* * * *
16679042 GGTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCACGAAACAAGCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
16679094 GGCGGGCGCT
Statistics
Matches: 212, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
197 46 0.22
199 1 0.00
200 122 0.58
201 43 0.20
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (199 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGTGCAGGCACTC
AACCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCCTACAGGCTACCAA
TCCTACTGCTGGTCCTGCTATCGCAACCCTCGATCGAGTCCGATCTTAGAATGGGAAAGAACTCC
ATAT
Found at i:16679047 original size:26 final size:26
Alignment explanation
Indices: 16679018--16679068 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16679008 CGATCCGATC
*
16679018 TTAGA-ATGGGAAAGAACTCCGTATGG
1 TTAGACAT-GGAAAGAACTCCATATGG
*
16679044 TTAGACATGGAATGAACTCCATATG
1 TTAGACATGGAAAGAACTCCATATG
16679069 CCTAAGGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACATGGAAAGAACTCCATATGG
Found at i:16679323 original size:159 final size:158
Alignment explanation
Indices: 16679044--16679538 Score: 397
Period size: 159 Copynumber: 3.1 Consensus size: 158
16679034 CTCCGTATGG
* * * * ** * * **
16679044 TTAGACAT-GGAATGAACTCCATATGCCTAAGGCAACCCACGAAACAAGCGGGCGGGCGCTTAGT
1 TTAGAC-TGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAAC
* * * * * * * *
16679108 CGATCGGAGAGGCAGAATGTGCAAG-CTGAGGACCCGACCTGGTCCCCCTTGCGTGCTGTCGATC
65 CGACCGGAGAGGCAGAATGCGCAAGCCAG-GGA-TCAACCCGATCCCCCTTGTGTGCTGTCGATC
**
16679172 CTACTGTCGTAACCCTCGATCCGATCCGATC
128 CTACTGTCACAACCCTCGATCCGATCCGATC
** * * * * ** * * *
16679203 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGTTTGCGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAACC
* * *
16679268 -AGCCGGAGAGGCATAATGCGCAAGCCAGGGATTAACCCGATCCCCCTCTGTGTGCTGTCAATCC
66 GA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCT-TGTGTGCTGTCGATCC
*** * * * * *
16679332 CGTTGCCACAACCCTCGGTCC-AGCTGGGTC
129 TACTGTCACAACCCTCGATCCGATC-CGATC
*
16679362 TTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGCGGGAGCTCAAC
1 TTAGAC-TGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAAC
* ** ** ** *
16679426 CGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTTGATCCCCCTTGTGTGCTGTCGATCTT
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCTTGTGTGCTGTCGATCCT
**
16679491 ACTGTCACAACCCTCGATCCGATTTGATC
130 ACTGTCACAACCCTCGATCCGATCCGATC
*
16679520 TTAGATTGGGGAATGAACT
1 TTAGACT-GGGAATGAACT
16679539 TCATATGCTT
Statistics
Matches: 260, Mismatches: 66, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 53 0.20
159 202 0.78
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAACC
GACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCTTGTGTGCTGTCGATCCTA
CTGTCACAACCCTCGATCCGATCCGATC
Found at i:16680283 original size:26 final size:26
Alignment explanation
Indices: 16680254--16680323 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
16680244 TCTTAGACTG
16680254 GGAATGAACTCCGTATGCTTAGAAAT
1 GGAATGAACTCCGTATGCTTAGAAAT
* *
16680280 GGAATGAACTCCATATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGAAAT
16680306 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16680324 CTAAGCCAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGAAAT
Found at i:16680790 original size:84 final size:84
Alignment explanation
Indices: 16680649--16680802 Score: 229
Period size: 84 Copynumber: 1.8 Consensus size: 84
16680639 TGCTTAGATT
* *
16680649 GGGGATGAATTTCGTATGCCTAAGTGAACCCACGAAACGAGCATACGGGCGCCCAGCCGATCGGA
1 GGGGATGAATCTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCCCAGCCGATCGGA
16680714 GAGGCAGAATGCGCAAGCC
66 GAGGCAGAATGCGCAAGCC
* * * * *
16680733 GGGGATGAA-CTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGCGTGCGCTCAGCCGATCGG
1 GGGGATGAATCTC-GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCCCAGCCGATCGG
16680797 AGAGGC
65 AGAGGC
16680803 TGGTCGAAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
83 2 0.03
84 60 0.97
ACGTcount: A:0.27, C:0.25, G:0.32, T:0.16
Consensus pattern (84 bp):
GGGGATGAATCTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCCCAGCCGATCGGA
GAGGCAGAATGCGCAAGCC
Found at i:16681098 original size:26 final size:26
Alignment explanation
Indices: 16681067--16681119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16681057 TTGATATGAT
16681067 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
16681093 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCCATATG
16681119 C
1 C
16681120 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16681221 original size:184 final size:184
Alignment explanation
Indices: 16680908--16681270 Score: 417
Period size: 184 Copynumber: 2.0 Consensus size: 184
16680898 TCCGGCTAGG
* * *
16680908 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
** * * * * * *
16680973 CCGGTCGGAGAAGTAGAATGCGCAAGCCATGGATCGGCTCGATCCCCCCTGCATTCTATCGATCC
66 CCCATCGAAGAAGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCCTACATGCTATCGATCC
* * **
16681038 TGCTACCCCAACCCTC-AGTTTGATATGATCTTAGACTAGGAATGAACTCCATAT
131 TACTACCCCAACCCTCGA-TCTGATACAATCTTAGACTAGGAATGAACTCCATAT
* **
16681092 GCTTAGACATGGAATGAAC-TCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTTTCA
1 GCTTAGACATGGAATGAACTTC-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * * *
16681156 GCCCATCGAAGAGGCAGAATGCATAAGTCGGGGATCGGC-CAGGTCCCTCCTACATGCTGTCGAT
65 GCCCATCGAAGAAGCAGAATGCACAAGCCAGGGATCGGCTC-GATCCCCCCTACATGCTATCGAT
** * *
16681220 CCTACTGTCGCAACCCTCGATCTGATCCAATCTTAGACTAGGAATGAACTC
129 CCTACTACCCCAACCCTCGATCTGATACAATCTTAGACTAGGAATGAACTC
16681271 TGTATGCCTA
Statistics
Matches: 147, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 3 0.02
184 143 0.97
185 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCCATCGAAGAAGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCCTACATGCTATCGATCC
TACTACCCCAACCCTCGATCTGATACAATCTTAGACTAGGAATGAACTCCATAT
Found at i:16681603 original size:26 final size:26
Alignment explanation
Indices: 16681567--16681616 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16681557 CCGATCCGAT
16681567 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
16681593 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTACGTA
16681617 GGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16682129 original size:196 final size:196
Alignment explanation
Indices: 16681779--16682217 Score: 449
Period size: 196 Copynumber: 2.2 Consensus size: 196
16681769 AACTGTGGCC
* * ** * *
16681779 TAGACATGGAATGAACTCCGTATGCTAAGCCAAGCCACGAAATGAGCATGCGAGTGCTCAGTCGG
1 TAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCGA
* * * *
16681844 TCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCTGC
66 TCCGAAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCTTACGAGCTACCGATCCTGC
* ** * * *
16681909 TACTAGTCATACTGTCGCAACCCTC-GATTCGATCTGATGTTAGATTGGGAATGAACTGTAGGGG
131 TACTAGCCATACTACCGCAACCCTCAG-TCCGATCTGATCTTAGACTGGGAATGAACTGTAGGGG
16681973 CT
195 CT
** *
16681975 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCGTGAAACGAGCGTGCGAACGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCG
* * ** * *
16682040 AT-CGGAGAGGCAGAATACATAAGCCGAGGATC-AGCTTGGTCCCCCTTACGAGCTATCGATCCT
65 ATCCGAAGAGGCAGAATACACAAGCCGAGGATCGA-CCCGATCCCCCTTACGAGCTACCGATCCT
* * * ** *
16682103 GCTGCTGGCCCTGTTACCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTA-
129 GCTACTAGCCATACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT--GTAG
*
16682167 -TGCT
192 GGGCT
* ** *
16682171 TAGAC-TGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAG
1 TAGACAT-GGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAG
16682218 TGTGCGGATG
Statistics
Matches: 198, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
195 2 0.01
196 159 0.80
197 34 0.17
198 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (196 bp):
TAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCGA
TCCGAAGAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCTTACGAGCTACCGATCCTGC
TACTAGCCATACTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTGTAGGGGC
T
Found at i:16682194 original size:26 final size:26
Alignment explanation
Indices: 16682143--16682195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16682133 CCGATCTGAT
*
16682143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16682169 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16682195 C
1 C
16682196 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16689217 original size:26 final size:26
Alignment explanation
Indices: 16689179--16689231 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689169 GGCTCAAAAT
*
16689179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16689205 CTTAGACAT-GGAATGCACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16689231 C
1 C
16689232 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16689791 original size:26 final size:26
Alignment explanation
Indices: 16689753--16689831 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16689743 TCGGTCTGAT
16689753 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16689779 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16689805 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16689831 C
1 C
16689832 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16690310 original size:26 final size:26
Alignment explanation
Indices: 16690281--16690333 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16690271 CCGGTCCAAT
16690281 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16690307 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16690333 C
1 C
16690334 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16690564 original size:27 final size:26
Alignment explanation
Indices: 16690534--16690590 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
16690524 GACGACCCGT
** *
16690534 TTTTTATTTTTCATGATTTTTAAAACA
1 TTTTTATGGTTCAGGATTTTTAAAA-A
*
16690561 -TTTTATGGTTCAGGATTTTTTAAAA
1 TTTTTATGGTTCAGGATTTTTAAAAA
16690586 TTTTT
1 TTTTT
16690591 TTAGAAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.05, G:0.09, T:0.60
Consensus pattern (26 bp):
TTTTTATGGTTCAGGATTTTTAAAAA
Found at i:16691041 original size:26 final size:26
Alignment explanation
Indices: 16691003--16691055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16690993 GGCTCAAAAT
16691003 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16691029 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16691055 C
1 C
16691056 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16691836 original size:12 final size:12
Alignment explanation
Indices: 16691819--16691858 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
16691809 CCGCTCTGCG
16691819 TGCTGCCGATCC
1 TGCTGCCGATCC
16691831 TGCTGCCGATCC
1 TGCTGCCGATCC
* *
16691843 TGCTGCTGGTCC
1 TGCTGCCGATCC
16691855 TGCT
1 TGCT
16691859 ACAGCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.05, C:0.38, G:0.28, T:0.30
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:16691922 original size:26 final size:26
Alignment explanation
Indices: 16691884--16691933 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16691874 CTAGTCTGAT
*
16691884 CTTAGACTGGGAATGAACTTTGTACA
1 CTTAGACTGGGAATGAACTCTGTACA
16691910 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
16691934 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACA
Found at i:16692119 original size:26 final size:26
Alignment explanation
Indices: 16692068--16692120 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16692058 CCGGTCTGAT
* **
16692068 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTGGGAATGAACTTCATATG
*
16692094 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
16692120 C
1 C
16692121 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:16693297 original size:710 final size:710
Alignment explanation
Indices: 16692065--16693591 Score: 1757
Period size: 710 Copynumber: 2.2 Consensus size: 710
16692055 GATCCGGTCT
* *** * *
16692065 GATCTTAGACTGGGAATGAAGTTTGTATGCTTAGACTGGGGATGAACTTCATATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * ** * * * * * * * *
16692130 CCCACGAATCGAA-CATGCGGGCGCTCAGCCGGCTGGAGAGGCCG-GCCGAAAAGGCAAAATGCA
66 CCCACGAAAC-AAGCGTACGGGCGCTCAGCTAGCCGGAGAGGCTGATCAGAGAA-GTAGAATGTA
* * * * * * ** * * * ** *
16692193 TAAGCTGGGGATCGG-CCAGATCCTCCC-TGCGTGCTGTCAATCCTACTGCTGGTCCTGTTGCCA
129 CAAGCTGAGGATCGGTTC-GGTCC-CCCTTACATGCTACCGATCTTACTGCTGGTCCTGCTATCG
* * *
16692256 CAACCCTCAGTCCGATCCAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
192 TAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTACACATGGAATGAAC
* * * * *
16692321 TCCGTATGCCTAAGCCAATCCATGAAACGAGCGTATGGGCACTCAGTCGATCGAAAAGGCAGAAT
257 TCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCACTCAGTCGAGCGAAAAGGCAGAAT
* * * * *
16692386 GCCCAAGCCGGGGACCAGCTCGGTACCCCCTGCGTGCTGTCGATCCTACTGTTGCAACCCTCAGT
322 GCCCAAGCCGAGGACCAGCCCGATACCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGT
* * *
16692451 CCAGTCCGATCTTAGACTAAGAATGAACTCCATCTGCCTAAGTCAACCCACGAAATGAGCGTACG
387 CCAGTCCGATCTTAGACTAAGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACG
* * * * ** * * * *
16692516 GGCATTGACCCGGTCGGAGAGTTATAATGCACAAGCCGAGGATTAGCTCGATCCCCTTCTACGTA
452 GGCACTGACCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCCCGATCCCCTTCTACATA
* *
16692581 CTGTCGGTCCGGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
517 CTGTCGGTCCGGCTGCCACAACCATCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * *
16692646 CCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCAGCCGACCGGAGAGGCAGAATGAACAAGC
582 CCTAAGCCAACCCACGAAACGGGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATGAACAAGC
* * * * *
16692711 TAGGGAT-AGGCCCG-GTCCCCCCTGCGTGCTGCCGATCTTGCTGCCATAACCCTTGGTCCAGTT
647 TAGGGATCA--CCCGAGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTACAGTT
16692774 C
710 C
* * *
16692775 GATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTGAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* *
16692840 CCCATGAAACAAGCGTACGGGCGCTCAG-TCAGTCGGAGAGGCTGATCAGAGAAGTAGAATGTAC
66 CCCACGAAACAAGCGTACGGGCGCTCAGCT-AGCCGGAGAGGCTGATCAGAGAAGTAGAATGTAC
16692904 AAGCTGAGGATCGGTTCGGTCCCCCTTACATGCTACCGATCTTACTGCTGGTCCTGCTATCGTAA
130 AAGCTGAGGATCGGTTCGGTCCCCCTTACATGCTACCGATCTTACTGCTGGTCCTGCTATCGTAA
** * * *
16692969 CCCTCAGTCC-AGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTACACATGGAATGTACTT
195 CCCTCAGTCCGA-TCCAATCTTAGACTGGGAATGAACTTCGTATGCTTACACATGGAATGAACTC
* * *
16693033 CGTATGCCTAAGCCAACCCATGAACCAAGCGTACGAGCGCTCAG-CTAGCAGAAAAGGCAGAATG
259 CGTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCACTCAGTCGAGC-GAAAAGGCAGAATG
* * * * *
16693097 CGCAAGCCGAGGACCAGCCCGATCCCCCCTGCGTGCTATCGATCTTGCTGTCGTAACCCTC-GAT
323 CCCAAGCCGAGGACCAGCCCGATACCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAG-T
** * *
16693161 CC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTC
387 CCAG-TCCGATCTTAGACTAAGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTAC
* * * * *
16693225 GGGCCCTGAGCCAGCCGAAGAGGCATAATGCACAAGTCAAGGATCGGCCC-AGTCCCAC-TCTGC
451 GGGCACTGACCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCCCGA-TCCC-CTTCTAC
* * *
16693288 ATGCTGTCGGTCCTGCTGCCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
514 ATACTGTCGGTCCGGCTGCCACAACCATCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * * ** * **
16693353 ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGTCGGTCAGAGAGGTAGAATGCGCA
579 ATGCCTAAGCCAACCCACGAAACGGGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATGAACA
* * ** * * * * * * *
16693418 AGTTGGGGATCATTCGAGTCCCTCTTATGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTACGGT
644 AGCTAGGGATCACCCGAGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTACAGT
16693483 TC
709 TC
*
16693485 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* *
16693550 CCCACGAAACGAGCGTACGGGGGCTCAGCTAGCCGGAGAGGC
66 CCCACGAAACAAGCGTACGGGCGCTCAGCTAGCCGGAGAGGC
16693592 CGACCGAAGA
Statistics
Matches: 677, Mismatches: 126, Indels: 28
0.81 0.15 0.03
Matches are distributed among these distances:
709 14 0.02
710 654 0.97
711 9 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (710 bp):
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCGTACGGGCGCTCAGCTAGCCGGAGAGGCTGATCAGAGAAGTAGAATGTACA
AGCTGAGGATCGGTTCGGTCCCCCTTACATGCTACCGATCTTACTGCTGGTCCTGCTATCGTAAC
CCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTACACATGGAATGAACTCCG
TATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCACTCAGTCGAGCGAAAAGGCAGAATGCCC
AAGCCGAGGACCAGCCCGATACCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCAG
TCCGATCTTAGACTAAGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCA
CTGACCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCCCGATCCCCTTCTACATACTGT
CGGTCCGGCTGCCACAACCATCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGGGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATGAACAAGCTAGG
GATCACCCGAGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTACAGTTC
Found at i:16693524 original size:26 final size:26
Alignment explanation
Indices: 16693488--16693540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16693478 ACGGTTCGAT
16693488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16693514 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16693540 C
1 C
16693541 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16693897 original size:26 final size:26
Alignment explanation
Indices: 16693868--16693920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16693858 CTGGTTTGAT
*
16693868 CTTAGAC-TGGGAATGAACTTTGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
16693894 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
16693920 C
1 C
16693921 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:16694404 original size:26 final size:26
Alignment explanation
Indices: 16694368--16694420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16694358 CCGATCCGAT
* *
16694368 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16694394 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16694420 C
1 C
16694421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16695144 original size:26 final size:25
Alignment explanation
Indices: 16695101--16695152 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16695091 GGCTCAAACT
* *
16695101 CTTAGACTGGGATGAACTCCTTATG
1 CTTAGACTGGAATGAACTCCATATG
16695126 CTTAGACATGGAATGAACTCCATATG
1 CTTAGAC-TGGAATGAACTCCATATG
16695152 C
1 C
16695153 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:16696111 original size:158 final size:156
Alignment explanation
Indices: 16695670--16696115 Score: 416
Period size: 158 Copynumber: 2.8 Consensus size: 156
16695660 AACTTCGTAT
* * * * *
16695670 GCTTAGACATGGAATGAAGTTCGTATGCCT-AGCCAACCCACGAAATGAACGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGCACTCAG
* * * *
16695734 CCGGCCAGAGAGGCAAAATGCGTAAGTCAGGGACCGGCCTGGTCCCCCCTACGTGCTATCAATCC
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCGCCCTGGTCCCCCCTACGTGCTATCGATCC
* * * *
16695799 TGCTACCGCAACCCTAGGTTCGGTCCT
130 CGCTACCACAACCCTAGGTCCGGTCCG
** * * ** * *
16695826 ATTTAGAC-TGGGATCGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGCT-CGGGAGCTG
1 GCTTAGACATGGAAT-GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGCA-CTC
* * * * * * **
16695889 AGCTGGGCGAGAGGGGCATAATGCGCAAGCCGGGGACCGTCCC-GGTCCCCTTCTGTGTGCTATC
63 AGC-CGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCG-CCCTGGTCCCC-CCTACGTGCTATC
* * **
16695953 GGTCCCGCTACCACAACCCTTGGTCCGGCTGGG
125 GATCCCGCTACCACAACCCTAGGTCCGG-TCCG
* * *
16695986 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCGTGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCACTCAG
* **
16696050 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCCTGGTCCCCCCTACACGCTATCGATC
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACC-GCCCTGGTCCCCCCTACGTGCTATCGATC
16696115 C
129 C
16696116 TACTGTCGTA
Statistics
Matches: 222, Mismatches: 55, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
155 5 0.02
156 21 0.09
157 22 0.10
158 81 0.36
159 56 0.25
160 32 0.14
161 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCACTCAGC
CGGCCAGAGAGGCAAAATGCGCAAGCCAGGGACCGCCCTGGTCCCCCCTACGTGCTATCGATCCC
GCTACCACAACCCTAGGTCCGGTCCG
Found at i:16696186 original size:26 final size:26
Alignment explanation
Indices: 16696146--16696197 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16696136 TAGTCTGATC
*
16696146 TTAGATTGGGAATGAACTTCGTATGT
1 TTAGATTGGGAATGAACTCCGTATGT
*
16696172 TTAGATTGGGGATGAACTCCGTATGT
1 TTAGATTGGGAATGAACTCCGTATGT
16696198 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.37
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCGTATGT
Found at i:16698935 original size:26 final size:26
Alignment explanation
Indices: 16698891--16698944 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16698881 CTGGTTTGAT
* *
16698891 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
16698917 CTTAGACTGAGG-ATCAACTCCGTATG
1 CTTAGACT-AGGAATCAACTCCGTATG
16698943 CT
1 CT
16698945 AAGTCAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:16700256 original size:26 final size:26
Alignment explanation
Indices: 16700218--16700270 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16700208 GGCTCAAAAT
16700218 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
16700244 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16700270 C
1 C
16700271 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16701055 original size:157 final size:157
Alignment explanation
Indices: 16700760--16701255 Score: 355
Period size: 157 Copynumber: 3.2 Consensus size: 157
16700750 TCGTATGCTC
* * * * * *
16700760 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAA-AGAGCGTGCGCGCGCTCAGCC-
1 AGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAGA-CGTGCGAGAGCTCAACCA
** ** * * * * * * *
16700823 GGTCAAAGAGGCAAAATGTACAAGACTGGGATCGACCC-AGTCCCCCCTACGTGCTATCGATCCT
65 ACT-GGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGA-T-CCCCCTGCGTGCTACCGATCCT
* ** * *
16700887 ACTATCGCAACCCTCGGTCTGGTCTGATCTT
127 GCTGCCACAACCCTCGGTCCGGTCTGATCTT
* ** * * ***
16700918 AGACCGGGAATGAACTCTGTATGCCTAAGTTGAA-CCAC-AAAC-GAGCGTGCGAGCGCTGAGTT
1 AGACAGGGAATGAACTCTGTATGCCTAAG-CCAACCCACGAAACAGA-CGTGCGAGAGCTCAACC
* * * * *
16700980 GA-TAGGAGAGGCATAATGCACAAGCCGGGGATAGGCCCGGTACCCCTTTGCGTGCTACCGAT-C
64 AACT-GGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGAT-CCCC-CTGCGTGCTACCGATCC
* * **
16701043 T-CATGCCACAACCATCGATCCGG-CTGGGGCTT
126 TGC-TGCCACAACCCTCGGTCCGGTCT-GATCTT
* ** *
16701075 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTGCGGGAGCTCAACCAA
1 AGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAGACGTGCGAGAGCTCAACCAA
* * * *
16701140 CTGGAGAGGCAGAATGCGCAAGCCGGGTATCGACCCGATCCCCCTGCGTGCTATCGATCCTGCTG
66 CTGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGATCCCCCTGCGTGCTACCGATCCTGCTG
** *
16701205 CTGCAACCCTTGGTCCGGTCTGATCTT
131 CCACAACCCTCGGTCCGGTCTGATCTT
* *
16701232 AGACTGGGAATGAACTTTGTATGC
1 AGACAGGGAATGAACTCTGTATGC
16701256 TTAGACTGAG
Statistics
Matches: 258, Mismatches: 66, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
156 18 0.07
157 144 0.56
158 91 0.35
159 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
AGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAGACGTGCGAGAGCTCAACCAA
CTGGAGAGGCAGAATGCACAAGCCGGGGATAGACCCGATCCCCCTGCGTGCTACCGATCCTGCTG
CCACAACCCTCGGTCCGGTCTGATCTT
Found at i:16701208 original size:513 final size:513
Alignment explanation
Indices: 16700215--16701308 Score: 1282
Period size: 513 Copynumber: 2.2 Consensus size: 513
16700205 CGTGGCTCAA
* * *
16700215 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 AATCTTAGACTAGGAATGAACTCTGTATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * *
16700280 CCCATGAAACGAGCGTGCGGACGCTGAGCCAGTCGGAGAGGCAAAATTAACAAGTCGGGGATCGG
66 CCCACGAAAAGAGCGTGCGGACGCTCAGCCAGTCAAAGAGGCAAAATTAACAAGACGGGGATCGA
* * * * *
16700345 CCCGATCCCCACTACGTGCTGTCGATCCTTCCGTCGCAACCCTCGGTTTGATCCAATCTTAGACT
131 CCCGATCCCCACTACGTGCTATCGATCCTACCATCGCAACCCTCGGTCTGATCCAATCTTAGACC
* *
16700410 GGGAATGAACTCCGTATGCATAAGTCAATCCACGAAACGAGCATGCGGGCGTCGAGCCGATTGAA
196 GGGAATGAACTCCGTATGCATAAGTCAATCCACGAAACGAGCATGCGAGCGTCGAGCCGATAGAA
** * * * *
16700475 GAGGCATAATATGCAAGCCAAGGATCAGCCCGGTCCCCCTCTACGTGTTGCCGGTCCCATTGCCA
261 GAGGCATAATACACAAGCCAAGGATCAGCCCGGTACCCCTCTACGTGCTACCGATCCCATTGCCA
* * * *
16700540 CAACCGTTGGTTCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
326 CAACCATCGATCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * * * *
16700605 ACGAGCATGTGGGCGCTCAGCCAGCCAGAGAGGTAGAATGTGCAAGTCGGGGATCGACCCGGTCC
391 ACGAGCATGCGGGAGCTCAACCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
*
16700670 CCCCTGCGTGCTGTCGATCCTGCTGCTAGTCTTGCTGCCGCAACCCTCGATCTGGTGT
456 CCCCTGCGTGCTATCGATCCTGCTGCTAGTCTTGCTGCCGCAACCCTCGATCTGGTGT
16700728 AATCTTAGACTAGGAATGAACT-TCGTATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 AATCTTAGACTAGGAATGAACTCT-GTATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * *
16700792 ACCTACGAAAAGAGCGTGCGCG-CGCTCAGCCGGTCAAAGAGGCAAAATGT-ACAAGACTGGGAT
65 ACCCACGAAAAGAGCGTGCG-GACGCTCAGCCAGTCAAAGAGGCAAAAT-TAACAAGACGGGGAT
* * * **
16700855 CGACCC-AGTCCCCCCTACGTGCTATCGATCCTACTATCGCAACCCTCGGTCTGGTCTGATCTTA
128 CGACCCGA-TCCCCACTACGTGCTATCGATCCTACCATCGCAACCCTCGGTCTGATCCAATCTTA
* * * * **
16700919 GACCGGGAATGAACTCTGTATGCCTAAGTTGAA-CCAC-AAACGAGCGTGCGAGCG-CTGAGTTG
192 GACCGGGAATGAACTCCGTATGCATAAG-TCAATCCACGAAACGAGCATGCGAGCGTC-GAGCCG
* * ** * * *
16700981 ATAGGAGAGGCATAATGCACAAGCCGGGGAT-AGGCCCGGTACCCCTTTGCGTGCTACCGATCTC
255 ATAGAAGAGGCATAATACACAAGCCAAGGATCA-GCCCGGTACCCCTCTACGTGCTACCGATCCC
*
16701045 A-TGCCACAACCATCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
319 ATTGCCACAACCATCGATCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** *
16701109 CCACGAAAC-AGACGTGCGGGAGCTCAACCAACTGGAGAGGCAGAATGCGCAAGCCGGGTATCGA
384 CCACGAAACGAG-CATGCGGGAGCTCAACCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * *
16701173 CCCGAT-CCCCCTGCGTGCTATCGA---T-C--CT-G-C-TGCT---GCAACCCTTGGTCCGGTC
448 CCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTAGTCTTGCTGCCGCAACCCTCGATCTGGTG
16701225 T
513 T
* * * * * *
16701226 GATCTTAGACTGGGAATGAACTTTGTATGCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCA
1 AATCTTAGACTAGGAATGAACTCTGTATGCTCAGACATG-GAATGAACTCCGTATGCCTAAGCCA
*
16701290 ACCCACGAAACGAGCGTGC
65 ACCCACGAAAAGAGCGTGC
16701309 ATGCGCTCAG
Statistics
Matches: 498, Mismatches: 73, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
497 2 0.00
498 86 0.17
499 1 0.00
501 4 0.01
502 1 0.00
503 1 0.00
504 2 0.00
506 1 0.00
507 1 0.00
510 19 0.04
511 115 0.23
512 70 0.14
513 190 0.38
514 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (513 bp):
AATCTTAGACTAGGAATGAACTCTGTATGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAAAGAGCGTGCGGACGCTCAGCCAGTCAAAGAGGCAAAATTAACAAGACGGGGATCGA
CCCGATCCCCACTACGTGCTATCGATCCTACCATCGCAACCCTCGGTCTGATCCAATCTTAGACC
GGGAATGAACTCCGTATGCATAAGTCAATCCACGAAACGAGCATGCGAGCGTCGAGCCGATAGAA
GAGGCATAATACACAAGCCAAGGATCAGCCCGGTACCCCTCTACGTGCTACCGATCCCATTGCCA
CAACCATCGATCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGAGCATGCGGGAGCTCAACCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
CCCCTGCGTGCTATCGATCCTGCTGCTAGTCTTGCTGCCGCAACCCTCGATCTGGTGT
Found at i:16701279 original size:26 final size:26
Alignment explanation
Indices: 16701229--16701281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16701219 CCGGTCTGAT
**
16701229 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16701255 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
16701281 C
1 C
16701282 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16701874 original size:11 final size:11
Alignment explanation
Indices: 16701858--16701890 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16701848 CGGTTAGGCT
16701858 CTCCGACGATG
1 CTCCGACGATG
16701869 CTCCGACGATG
1 CTCCGACGATG
*
16701880 CTCTGACGATG
1 CTCCGACGATG
16701891 GTGCCTCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16703594 original size:156 final size:158
Alignment explanation
Indices: 16703351--16703639 Score: 354
Period size: 156 Copynumber: 1.8 Consensus size: 158
16703341 CTTTGCTCTG
* * * * ** **
16703351 ATCTTAGACTGGGAAAGAACTTCGTATGCCTAAGTCAACCCAAGAAATGAGCGCTCGGGCGTTGA
1 ATCTTAGACTAGGAAAGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGCTCGACCACTGA
* * *
16703416 GCCGATCAGAGAGGTAGAATG-CAAGCCAGGGATC-GACCCGATCCCCCT-TGTGTGCTGTCGAT
66 ACCGATCAGAGAGGCAGAATGACAAGCCAGGGATCAG-CCCGATCCCCCTCTGCGTGCTGTCGAT
16703478 CCTGCTACTGTAACCCTCGGTCTAATCCA
130 CCTGCTACTGTAACCCTCGGTCTAATCCA
* * *
16703507 ATCTTGGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCG-TGCGACCACTG
1 ATCTTAGACTAGGAAAGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGCT-CGACCACTG
* *
16703571 AACCGATC-GAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCG
65 AACCGATCAG-AGAGGCAGAATG-ACAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCG
*
16703635 GTCCT
128 ATCCT
16703640 ACTGCCACAA
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
155 2 0.02
156 68 0.62
158 24 0.22
159 16 0.15
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (158 bp):
ATCTTAGACTAGGAAAGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGCTCGACCACTGA
ACCGATCAGAGAGGCAGAATGACAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
CTGCTACTGTAACCCTCGGTCTAATCCA
Found at i:16703705 original size:159 final size:158
Alignment explanation
Indices: 16703517--16703976 Score: 525
Period size: 160 Copynumber: 2.9 Consensus size: 158
16703507 ATCTTGGACT
* * * * * * *
16703517 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGACCACTGAACCGATCGAA
1 AGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTGAGCCGACCGAA
* *
16703582 GAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTACTGCCA
66 GAGGCATAATGCGCAAGCCGGGGATC-GCCCGATCCCTCTCTGCGTGCTGTCGGTCCTACTGCCA
*
16703647 CAACCCTCGATCCGGCTGGGGCTTAGACA
130 CAACCCTCGATCCGGATGGGGCTTAGACA
* * * *
16703676 AGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCATACAGGGCGCTGAGCCGACCG
1 AGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGC-GAGCGCTGAGCCGACCG
* * * * * *
16703740 ATGAGGCATAATTCGCAAGCTGGGGATCGACCCGGTCCCTCTCTGCATGCTGTCGGTCCCACTGC
64 AAGAGGCATAATGCGCAAGCCGGGGATCG-CCCGATCCCTCTCTGCGTGCTGTCGGTCCTACTGC
* *
16703805 CACAATCCTCGATCTGGATGGGGCTTAGACA
128 CACAACCCTCGATCCGGATGGGGCTTAGACA
* * * *
16703836 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-CGTGC-AGGCGCTCAGCCGGCCGG
1 AGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTGAGCCGACCGA
* * * * * *
16703899 AGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGATCCCTC-CTGCGTGTTGTCGATCCTACTG-C
65 AGAGGCATAATGCGCAAGCCGGGGATC-GCCCGATCCCTCTCTGCGTGCTGTCGGTCCTACTGCC
* *
16703962 GCAACCTTCGATCCG
129 ACAACCCTCGATCCG
16703977 ATTCGATCTT
Statistics
Matches: 249, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
156 12 0.05
157 18 0.07
158 44 0.18
159 43 0.17
160 131 0.53
161 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
AGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTGAGCCGACCGAA
GAGGCATAATGCGCAAGCCGGGGATCGCCCGATCCCTCTCTGCGTGCTGTCGGTCCTACTGCCAC
AACCCTCGATCCGGATGGGGCTTAGACA
Done.