Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 113 of 138
Found at i:16704013 original size:26 final size:26
Alignment explanation
Indices: 16703984--16704036 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16703974 CCGATTCGAT
16703984 CTTAGAATGAGAATGAACTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
* * **
16704010 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGAATGAGAATGAACTCCGTATG
16704036 C
1 C
16704037 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGAGAATGAACTCCGTATG
Found at i:16705320 original size:26 final size:26
Alignment explanation
Indices: 16705291--16705343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16705281 CCGGTCTGAT
*
16705291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16705317 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16705343 C
1 C
16705344 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16705709 original size:26 final size:26
Alignment explanation
Indices: 16705671--16705723 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16705661 CCGGTTTGAT
*
16705671 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
16705697 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
16705723 C
1 C
16705724 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16705891 original size:26 final size:26
Alignment explanation
Indices: 16705855--16705907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16705845 CCGGTCTGAT
*
16705855 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
16705881 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16705907 C
1 C
16705908 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16706921 original size:159 final size:158
Alignment explanation
Indices: 16706587--16707079 Score: 393
Period size: 158 Copynumber: 3.1 Consensus size: 158
16706577 TATTATACTG
* * * * ** * *
16706587 GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACAAGCGTGCAGGCGCTCAATTG-GCTGAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAG-A
* * * * * * * * *** *
16706651 GAGGCAGAATGCA-TAAGCCAGGGATGGGCTCGATCCCCCCTGCGTGCTGTCGATCCTATTGTCA
65 GAGGCAGAATG-AGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCCGCTGCCA
* ** * * **
16706715 CAACCCTCGGTTTG-GTCCGATCTTAGACTA
129 CAACCCTCGATCCGACT-GGGGCTTAGACTA
** ** * * * * * *
16706745 GGAATGAACTCTGTATGCCTAAGTTAACCCACGGAATGAGTGTGCGGGCGCTGAGCCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* * *
16706810 AGGCATAATGAGCAAGTCGGGGATCGACCCGATCCCCCTCTGCTTGCTGTCGATCCCGCTGCCAC
66 AGGCAGAATGAGCAAGTCGGGGATCGACCCGATCCCCCT-TGCGTGCTATCGATCCCGCTGCCAC
16706875 AACCCTCGATCCGACTGGGGCTTAGAC-A
130 AACCCTCGATCCGACTGGGGCTTAGACTA
* * * * *
16706903 TGGATTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGATCAGA
1 -GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGA
* * * * *
16706968 GAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTCCTTGCGTGCTATCGATCCTGCTGCCGC
65 GAGGCAGAATGAGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCCGCTGCCAC
* * ** *
16707033 AACCCTCGATCC-AGTTTGATCTTAGACTG
130 AACCCTCGATCCGA-CTGGGGCTTAGACTA
*
16707062 GGAATGAACTCCGTATGC
1 GGAATGAACTCCCTATGC
16707080 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 135 0.51
159 125 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
AGGCAGAATGAGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCCGCTGCCACA
ACCCTCGATCCGACTGGGGCTTAGACTA
Found at i:16707089 original size:26 final size:26
Alignment explanation
Indices: 16707053--16707105 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16707043 CCAGTTTGAT
16707053 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16707079 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16707105 C
1 C
16707106 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16708752 original size:159 final size:159
Alignment explanation
Indices: 16708303--16708789 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 159
16708293 GTCTTACTGT
* * *
16708303 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTTCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * *
16708368 AAACGAGTGTGTGGGTGCTGAGCCTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTT-G
66 AAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GATTTGG
* ** **
16708432 T-CCCCTCCTACGTG-TTGTCGATCCTGCTAT
130 TCCCCCT-CTGCGTGCTACT-GATCCTGCTGC
* ** * * * ** * * * *
16708462 CGCAACCCAAGG-TCCGGTCCGATCTTGGA-ATGGGAATGAACTCTGTATGCCTGAGTCAACCCA
1 CACAACCCTCGGTTCAGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * ***
16708525 CGAAATGAGCGTACGAGCACTGAGCCGGACGGAGAGGCATAATACGCAAGTCGGGGATCGACCCG
64 CGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATTTG
*
16708590 GTCCCCCTCTGCGTGCTACTGATCCCGCTGC
129 GTCCCCCTCTGCGTGCTACTGATCCTGCTGC
* *
16708621 CACAACCCTCGGTTCAGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACG
1 CACAACCCTCGGTTCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * *
16708686 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGTAAGCCGGGGATC-AGTTTGG
66 AAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-TTTGG
* * *
16708750 TCCCCC-CTGCATGCTACCGATCTTGCTGC
130 TCCCCCTCTGCGTGCTACTGATCCTGCTGC
*
16708779 CGCAACCCTCG
1 CACAACCCTCG
16708790 ATCTGATCCG
Statistics
Matches: 250, Mismatches: 70, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
158 36 0.14
159 201 0.80
160 13 0.05
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
CACAACCCTCGGTTCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATTTGGT
CCCCCTCTGCGTGCTACTGATCCTGCTGC
Found at i:16708831 original size:26 final size:26
Alignment explanation
Indices: 16708802--16708854 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16708792 CTGATCCGAT
* *
16708802 CTTAGATTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
16708828 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16708854 C
1 C
16708855 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16709559 original size:26 final size:26
Alignment explanation
Indices: 16709521--16709573 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16709511 GGCTTAAAAT
16709521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16709547 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16709573 C
1 C
16709574 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16709939 original size:159 final size:158
Alignment explanation
Indices: 16709546--16710046 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 158
16709536 AACTCCGTAT
** *
16709546 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * *** * * * *
16709611 CTGGCT-AGAGAGGCAGAATGCGCAAGATAGAGATCGGCCCGGTCCCCCCTACTTGCT-TCAATC
66 -TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATC
** *
16709674 CTGCTGTTGCAACCCTCGGTCCAGTCTGA
130 CTGCTGACGCAACCCTCGGTCCAGGCTGA
* * * * * * *
16709703 TCTTAGAC-TAGGAATGAACTCCGTACGCATAAGTCAACACACAAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
** * * * * * * * * *
16709767 ACCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTACTGCCGGT
65 GTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGAT
* * * *
16709832 CCTGCTGCCACAACCCTCGGTTC-GGCTGGG
129 CCTGCTGACGCAACCCTCGGTCCAGGCT-GA
* * * *
16709862 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * *
16709927 TCGATCGGAGAGGCAGATTGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
66 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* **
16709992 TGCTGACGCAACCCTCGATCC-GATTCGA
131 TGCTGACGCAACCCTCGGTCCAGGCT-GA
*
16710020 TCTT-GAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16710047 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
156 3 0.01
157 106 0.40
158 45 0.17
159 111 0.42
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
TGCTGACGCAACCCTCGGTCCAGGCTGA
Found at i:16710333 original size:278 final size:278
Alignment explanation
Indices: 16709829--16710357 Score: 760
Period size: 278 Copynumber: 1.9 Consensus size: 278
16709819 GCGTACTGCC
* * * * *
16709829 GGTCCTGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* ** * * * *
16709894 GCCAACCCACGAAAGGGGCGTACGGGCGCTCAGTCGATCGGAGAGGCAGATTGCGTAAGCCGAGG
66 GCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGG
* *
16709959 ATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGACGCAACCCTCGATCCGATTCGATCTT
131 ATCGACCCGATCCCCCCTGCATGCTGTCAATCCTGCTGACACAACCCTCGATCCGATTCGATCTT
*
16710024 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAACGG
196 GACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAACGG
16710089 GTCCGATTCAGAAAAAAA
261 GTCCGATTCAGAAAAAAA
16710107 GGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * *
16710172 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCGAAG-GGCAGAATGCGCAAGCTGGGG
66 GCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGG
* * * * * * *
16710236 ATCGGCCTGATCCCCCTTGCATGCTG-CAAATCCTGCT-ATCATAACCCTTGGA-CTGGTTCGAT
131 ATCGACCCGATCCCCCCTGCATGCTGTC-AATCCTGCTGA-CACAACCC-TCGATCCGATTCGAT
*
16710298 CTTAGACTGGGAATGAATTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCC
193 CTT-GACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCC
16710358 AACTGACAAA
Statistics
Matches: 221, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
276 2 0.01
277 65 0.29
278 154 0.70
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (278 bp):
GGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGG
ATCGACCCGATCCCCCCTGCATGCTGTCAATCCTGCTGACACAACCCTCGATCCGATTCGATCTT
GACTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATGCCTAAGCCTCGAAACGG
GTCCGATTCAGAAAAAAA
Found at i:16710339 original size:26 final size:26
Alignment explanation
Indices: 16710301--16710350 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16710291 GTTCGATCTT
*
16710301 AGACTGGGAATGAATTCCGTATGCTC
1 AGACTGGGAATGAACTCCGTATGCTC
*
16710327 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
16710351 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTC
Found at i:16710488 original size:184 final size:184
Alignment explanation
Indices: 16710153--16710683 Score: 586
Period size: 184 Copynumber: 2.9 Consensus size: 184
16710143 TAGACATGGA
* * * *
16710153 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCGAAG-GG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * ** * **
16710217 CAGAATGCGCAAGCTGGGGATCGGCCTGATCCCCCTTGCATGCTGCAAATCCTGCTATCATAACC
66 CAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGCTGATCCTGCTACCGCAACC
* * * * * * *
16710282 CTTGGACTGGTTCGATCTTAGACTGGGAATGAATTCCGTATGCTCAGACTGGGG
131 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCATATGCTCAGACTAGGG
** * * *
16710336 ATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGTACGGGCGCTCAGTCG-CTCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC-CGGAGAG
* *
16710400 GCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCAC-TACGTGCTGCTGATCCTACTACCGCAA
65 GCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCC-CTTGCGTGCTGCTGATCCTGCTACCGCAA
* *
16710464 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAGTCCATATGCTTAGACTAGGG
129 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCATATGCTCAGACTAGGG
* * * * * *
16710520 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGACGCTCGGCCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * ** *
16710585 TAGGATCCACAATCCGGGGA-CTAGCCCAGTCCCCCTTTGCGTGCTG-TCGATCCTGCTGCCGCA
66 CAGAATGCACAAGCCGGGGATC-GGCCTGGTCCCCC-TTGCGTGCTGCT-GATCCTGCTACCGCA
*
16710648 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
128 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
16710684 CTTTGTATGC
Statistics
Matches: 288, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
182 1 0.00
183 53 0.18
184 177 0.61
185 57 0.20
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGCTGATCCTGCTACCGCAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAAGTCCATATGCTCAGACTAGGG
Found at i:16710511 original size:26 final size:26
Alignment explanation
Indices: 16710482--16710534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16710472 CCGATCCGAT
*
16710482 CTTAGACT-GGGAATGAAGTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
16710508 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
16710534 C
1 C
16710535 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:16710789 original size:159 final size:158
Alignment explanation
Indices: 16710624--16711009 Score: 350
Period size: 158 Copynumber: 2.4 Consensus size: 158
16710614 TCCCCCTTTG
**
16710624 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTG
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCC
* * ** * * * * *
16710689 TATGCCTAAGTCAACCCATGAAAC-GAGCGTTCGGGGGTTGAGCCAGCCGGAGTGGCATAATGTG
66 TATGCCTAAGCCAACCCACGAAACGGA-CGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATGTG
** * *
16710753 CAAGCTGAGGATCGACTCGGTCCCCCTCAA
130 CAAGCCAAGGATCGACCCGATCCCCCT-AA
* *** * ** * *
16710783 CGTGCTGTCGGTCCCATTG-CGACAACCCTCGGTCCAG-CTGGGGCTTAGACAT-GTAA-AAACT
1 CGTGCTGTCGATCCTGCTGCCG-CAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACT
* *** *
16710844 CCCTATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCGCTCAGTTGGCTGGAGAGGCAGAATG
63 TCCTATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATG
**
16710909 TGCAAGCCAAGGATCGACCCGATCCCCCTTG
128 TGCAAGCCAAGGATCGACCCGATCCCCCTAA
* * * * * * *
16710940 TGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTTCA
1 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCC
16711005 TATGC
66 TATGC
16711010 TTATACATGG
Statistics
Matches: 171, Mismatches: 48, Indels: 17
0.72 0.20 0.07
Matches are distributed among these distances:
156 1 0.01
157 35 0.20
158 92 0.54
159 42 0.25
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCC
TATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATGTGC
AAGCCAAGGATCGACCCGATCCCCCTAA
Found at i:16711170 original size:184 final size:184
Alignment explanation
Indices: 16710840--16711269 Score: 521
Period size: 184 Copynumber: 2.3 Consensus size: 184
16710830 GACATGTAAA
* *** *
16710840 AACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTG-A-GGGCGCTCAGTTGGCTGGAGAGGC
1 AACTCCGTATGCCTAAGCCAACCCACGAAAC-GA-GTGTACGGGCGCTCAGACAGCCGGAGAGGC
* * * * * *
16710903 AGAATGTGCAAGCCAAGGATCGACCCGATCCCCCTTGTGTGCTATCGATCTTGCTGCCGCAACCC
64 AGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCACAACCC
* * * * * *
16710968 TCGGTCCGATCCGATCTTAGATTGGGAATGAACTTCATATGCTTATACAT-GGAATG
129 TCAGTCCGATCAGATCTTAGACTGGGAATAAACTCCATATGCTTAGAC-TGGGAATG
* *
16711024 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCACTCAGACAGCCGAAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGACAGCCGGAGAGGCAG
* *
16711089 AATGCGCAAGTCGAGGATCTG-CCCGATCCCCCCTGCGTGCTA-CTGATCCTACTGCCACAACCC
66 AATGCGCAAGCCAAGGATC-GACCCGATCCCCCCTGCGTGCTATC-GATCCTACTGCCACAACCC
* * *
16711152 TCAGTCC-AGTTAGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATG
129 TCAGTCCGA-TCAGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATG
* * *
16711208 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCAGCCGGAGAGG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGACAGCCGGAGAGG
16711270 TCGACCAGAG
Statistics
Matches: 211, Mismatches: 29, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
182 3 0.01
183 6 0.03
184 201 0.95
185 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGACAGCCGGAGAGGCAG
AATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCACAACCCTC
AGTCCGATCAGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTGGGAATG
Found at i:16711203 original size:26 final size:26
Alignment explanation
Indices: 16711167--16711219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16711157 CCAGTTAGAT
16711167 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16711193 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16711219 C
1 C
16711220 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16711908 original size:26 final size:26
Alignment explanation
Indices: 16711879--16711931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16711869 CTGATCCGAT
16711879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16711905 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16711931 C
1 C
16711932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16712988 original size:26 final size:26
Alignment explanation
Indices: 16712959--16713011 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16712949 CCGGTTCGAT
16712959 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16712985 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16713011 C
1 C
16713012 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16713515 original size:157 final size:156
Alignment explanation
Indices: 16713048--16713517 Score: 455
Period size: 157 Copynumber: 3.0 Consensus size: 156
16713038 CGGGGTCGGA
* * *
16713048 GTGCTATCGATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACT-TCG
1 GTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCT-G
* * * *
16713112 TATGCCTAAGACAACCCACGAAACGTGCATTCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCGC
65 TATGCCTAAGACAACCCACGAAACGTGCATGCGGGCGCTCAG-CCGCTGGAGAGGCATAATGCGC
* * *
16713177 AATCGA-GGATTGACCTGGTCCCCCTCT
129 AAGCCAGGGATCGACCTGGTCCCCCTCT
* * * * * * ** ** **
16713204 GAATGCTGTCGGTCCCGCTGCCATAGCCCTCAGTCTGGTTGGGGCTTAGACAT-GGAATGAACTC
1 G--TGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGAC-TGGGAATGAACTC
** * * * * * *
16713268 CCTATGCCTAAGCCAAGCCACGAAATGTGCATGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGC
63 TGTATGCCTAAGACAACCCACGAAACGTGCATGCGGGCGCTCAGCCGCT-GGAGAGGCATAATGC
* * * *
16713333 ACAAGCCGGGGATCAACCTGATCCCCCTAC-
127 GCAAGCCAGGGATCGACCTGGTCCCCCT-CT
* *
16713363 GTGCTGTCGATCCTGCTACCGTAACCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAGCTCTGT
1 GTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGT
* * * *
16713428 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCTGGAGAGGCATAATGCGCA
66 ATGCCTAAGACAACCCACGAAACGTGCATGCGGGCGCTCAGCC-GCTGGAGAGGCATAATGCGCA
*
16713493 AGCCAGGGATCG-GCTCGGTCCCCCT
130 AGCCAGGGATCGACCT-GGTCCCCCT
16713518 TGCATCCTGC
Statistics
Matches: 240, Mismatches: 64, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
156 4 0.02
157 118 0.49
158 99 0.41
159 18 0.08
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGT
ATGCCTAAGACAACCCACGAAACGTGCATGCGGGCGCTCAGCCGCTGGAGAGGCATAATGCGCAA
GCCAGGGATCGACCTGGTCCCCCTCT
Found at i:16713604 original size:26 final size:26
Alignment explanation
Indices: 16713575--16713627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16713565 CCGATCTAAT
*
16713575 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
16713601 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16713627 C
1 C
16713628 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16714719 original size:26 final size:26
Alignment explanation
Indices: 16714681--16714733 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16714671 CCAGTTCGAT
16714681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16714707 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16714733 C
1 C
16714734 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16714813 original size:184 final size:185
Alignment explanation
Indices: 16714496--16714892 Score: 492
Period size: 184 Copynumber: 2.2 Consensus size: 185
16714486 TGGCTCAAAC
* **
16714496 TCTTATACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ***
16714561 CACGAAATGAGCGTACGGGCACTCAACCGGCTAGAGAGGCAGAATGCGCAAGCCAGGGATTGGCC
66 CACGAAACGAGCGTACGGGCACTCAACCGCCGAGAGAGGCAGAATGAGCAAGCCAGGGACCAGCC
* * * * * * *
16714626 CGAT-CCCTCCTGCGTGCTATTAATCTTGCTGCCACATCCCTTGGTCCAGTTCGA
131 CGATCCCCTCCTGCATGCTATTAATCCTGCTACCACAACACTCGGTCCAGTCCGA
16714680 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * * *
16714745 CATGAAACGAGCGTGTGGGCGCTCAGCTGACCGA-AGAGGCATAATGAGTAAGCCAGGGACCAGC
66 CACGAAACGAGCGTACGGGCACTCAACCG-CCGAGAGAGGCAGAATGAGCAAGCCAGGGACCAGC
* * * * * *
16714809 CCGATCCCCTCTTGCATGCTGTTGATCCTGCTATCGCAACACTCGGTCCGGTCCGA
130 CCGATCCCCTCCTGCATGCTATTAATCCTGCTACCACAACACTCGGTCCAGTCCGA
16714865 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
16714893 CTAAGTCAAC
Statistics
Matches: 180, Mismatches: 31, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
184 113 0.63
185 67 0.37
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (185 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCACTCAACCGCCGAGAGAGGCAGAATGAGCAAGCCAGGGACCAGCC
CGATCCCCTCCTGCATGCTATTAATCCTGCTACCACAACACTCGGTCCAGTCCGA
Found at i:16715907 original size:158 final size:156
Alignment explanation
Indices: 16715406--16715900 Score: 514
Period size: 158 Copynumber: 3.1 Consensus size: 156
16715396 ACTCCGGATG
* * * *
16715406 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCGGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGTGTAC-GGCGCTCAGC
* * * * *
16715471 CGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCCCCTGTGTACTGTCGATCTT
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCC-GATCCCCCCTGTGTGCTGTCGATCCT
* *
16715536 GCTACCGCAACCCTTGGTTCGATCTGAT
129 GCTACCGCAACCCTCGGTCCGATCTGAT
* * * * *
16715564 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCA-GGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG-G-GTGTACGGCGCTCA
* * * * *
16715627 GCCGACCGGAGGGGTACAACGCGTAAGTTGGGGATCGGCGCGATCCCCCTCTGTGTGCTGTCTG-
63 GCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGC-CGATCCCCC-CTGTGTGCTGTC-GA
* * * * **
16715691 TCCCGCTGCCACAACCCTCGATCCGA-CTGGGG
125 TCCTGCTACCGCAACCCTCGGTCCGATCT-GAT
*
16715723 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGTGTACGG-CGCTCAGC
* * * * **
16715788 TGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCATGCTGTCGATCCT
65 CGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGC-CGATCCCCCCTGTGTGCTGTCGATCCT
** *
16715853 GCTTTCGCCACCCTCGGTCCGATCTGAT
129 GCTACCGCAACCCTCGGTCCGATCTGAT
16715881 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
16715901 TATATGCTTA
Statistics
Matches: 271, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 7 0.03
158 140 0.52
159 119 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGTGTACGGCGCTCAGCC
GACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCGATCCCCCCTGTGTGCTGTCGATCCTGC
TACCGCAACCCTCGGTCCGATCTGAT
Found at i:16715917 original size:26 final size:26
Alignment explanation
Indices: 16715881--16715933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16715871 CCGATCTGAT
16715881 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
16715907 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
16715933 C
1 C
16715934 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16716538 original size:11 final size:11
Alignment explanation
Indices: 16716522--16716565 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
16716512 AGTTTAGGCT
*
16716522 CTCCGACAATG
1 CTCCGACGATG
16716533 CTCCGACGATG
1 CTCCGACGATG
*
16716544 CTCCGACGACG
1 CTCCGACGATG
16716555 CTCCGACGATG
1 CTCCGACGATG
16716566 GTGCCTCAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.39, G:0.25, T:0.16
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16716860 original size:26 final size:26
Alignment explanation
Indices: 16716831--16716883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16716821 TCGGTCTGAT
*
16716831 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16716857 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16716883 C
1 C
16716884 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16717266 original size:159 final size:158
Alignment explanation
Indices: 16716856--16717319 Score: 420
Period size: 159 Copynumber: 2.9 Consensus size: 158
16716846 AACTTCGTAT
* **
16716856 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
1 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * *
16716921 CCGACCGAAGAGGTAGAATGCACAAGCCGGGGACCGACCCGATTTCCCCTTGCATGCTGTCGATC
66 CCGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCTTGCATGCTGTCGATC
*
16716986 TAGCTACCGCAACCCTCAGTCCGATCCGA
130 TAGCTACCCCAACCCTCAGTCCGATCCGA
* * * * * * * *
16717015 TCTTA-G-ATTGGGAATGAACTCTGTATGCCTAAGTCATCCCATGAAACGAGCATACGGGCACTG
1 GCTTAGGCA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTC
* * * * *
16717078 AGCCAGCCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
64 AGCCGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCT-TGCATGCTGTCGA
* ** ** * * *
16717143 TGC-CGCTACCCCAACCCTCTTTTTG-GCTGGG
128 T-CTAGCTACCCCAACCCTCAGTCCGATC-CGA
* *
16717174 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GGAGTGCGGGCGCTCA
1 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCA-TGCGGGCGCTCA
* *** * * * * *
16717238 GCCGGCCGGAGAGGTAGAATGTGTAAGCCTAGGGATCGGCCTGGTCCCCC-TACATGCTGCCGAT
65 GCCGGCCGAAGAGGTAGAATGCACAAGCC-GGGGATCGGCCCGATCCCCCTTGCATGCTGTCGAT
* *
16717302 CCT-GCTATCGCAACCCTC
129 -CTAGCTACCCCAACCCTC
16717320 GATCTGGTTC
Statistics
Matches: 239, Mismatches: 56, Indels: 21
0.76 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 34 0.14
159 183 0.77
160 20 0.08
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
CCGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTGCATGCTGTCGATCT
AGCTACCCCAACCCTCAGTCCGATCCGA
Found at i:16717649 original size:196 final size:197
Alignment explanation
Indices: 16717331--16717688 Score: 479
Period size: 196 Copynumber: 1.8 Consensus size: 197
16717321 ATCTGGTTCA
* *
16717331 ATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
16717396 CCATGAAATAAGCGTACGGGTACTCAGCCAACTAGAGAGGCAGAAAGCGCCAGCCGAGGATCGG-
66 CCACGAAACAAGCATACGAGCACTCAGCCAACCAGAGAGGCAGAAAGCACAAGCCGAGGACCGGC
* *
16717460 CTCGG-TCCCCCCTGCGTGCTGCCGATCCTGCTGCTAGCCGTGCTACCGTAACCCTCGGTTCGGT
131 CT-GGTTCCCCCCTGCATGCTGCCAATCCTGCTGCTAGCCGTGCTACCGTAACCCTCGGTTCGGT
16717524 CTG
195 CTG
* *
16717527 ATCTTAGATTGGGAATGAACTCTGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16717591 CCCACGAAACGAGCATGCGAGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGACCGG
65 CCCACGAAACAAGCATACGAGCACTCAGCCAACCAGAGAGGCAGAAAGCACAAGCCGAGGACCGG
* *
16717656 CCTGGTTCCCCCTTGCATGCTGTCAATCCTGCT
130 CCTGGTTCCCCCCTGCATGCTGCCAATCCTGCT
16717689 ACCACAACCC
Statistics
Matches: 137, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
195 1 0.01
196 111 0.81
197 25 0.18
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (197 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCATACGAGCACTCAGCCAACCAGAGAGGCAGAAAGCACAAGCCGAGGACCGGC
CTGGTTCCCCCCTGCATGCTGCCAATCCTGCTGCTAGCCGTGCTACCGTAACCCTCGGTTCGGTC
TG
Found at i:16717849 original size:159 final size:159
Alignment explanation
Indices: 16717564--16718056 Score: 403
Period size: 159 Copynumber: 3.1 Consensus size: 159
16717554 GCTTAGACAT
* *
16717564 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGCCGACCGAAG
* *
16717629 AGGCAGAATGCACAAGCCGAGGACCGGCCTGGTTCCCCCTTGCATGCTGTCAATCCTGCTACCAC
66 AGGCAGAATGCACAAGCCGAGGACCGGCCTCGATCCCCCTTGCATGCTGTCAATCCTGCTACCAC
16717694 AACCCTCGGTCCGGTCCGATCTTAGATTG
131 AACCCTCGGTCCGGTCCGATCTTAGATTG
* * * * * *
16717723 GGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCATACGGGCATTGAGCC-AGCCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGCCGA-CCGAA
* * * * **
16717787 GAGGCATAATGCACAAGCCGGGGATCGGCC-CGATCCCCCTCTGCGTGCTGTCGGTGCC-GCTAC
65 GAGGCAGAATGCACAAGCCGAGGACCGGCCTCGATCCCCCT-TGCATGCTGTCAAT-CCTGCTAC
* * * * ** *
16717850 CCCAACCCTCGATCTGG-CTGGGGCGTAGGCA-T-
128 CACAACCCTCGGTCCGGTC-CGATCTTA-G-ATTG
* * * * * * * * * *
16717882 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCA-ACAACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGCCGACCGAAG
* ** * * * *
16717946 AGGTAGAATGCGTAAGCC-AGGGATCGGCC-C-AGTCCCCCCTGCATGCTGTCGATCCTGCTATC
66 AGGCAGAATGCACAAGCCGA-GGACCGGCCTCGA-TCCCCCTTGCATGCTGTCAATCCTGCTACC
* * * *** * *
16718008 GCAACCCTCGATCTGGTTTAATCTTTGACTG
129 ACAACCCTCGGTCCGGTCCGATCTTAGATTG
*
16718039 AGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16718057 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 51 0.19
158 46 0.17
159 161 0.60
160 4 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGCCGACCGAAG
AGGCAGAATGCACAAGCCGAGGACCGGCCTCGATCCCCCTTGCATGCTGTCAATCCTGCTACCAC
AACCCTCGGTCCGGTCCGATCTTAGATTG
Found at i:16718707 original size:158 final size:156
Alignment explanation
Indices: 16718264--16718709 Score: 430
Period size: 158 Copynumber: 2.8 Consensus size: 156
16718254 AACTCCGTAT
**
16718264 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAATGAGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AACCACGAAATGAGCG-ATGGGCACTCAG
* * ** * * * *
16718329 CCAGCCAGAGAGGCAGAATGCACAAATCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCAATCC
64 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATCC
* * * *
16718394 TGCTGTCGCAACCCTCGGTCCGGTCTGA
129 CGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * * * * *
16718422 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCATGAAACGAGCGTTCGGGTGA-TGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCACGAAATGAGCGAT-GGG-CACTCA
* * ** * * *
16718485 GCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGTTCAGTCCCCCTCTGCATACTACCGAT
63 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTACCGAT
*
16718550 CCCGCTGCCACAACCCTCAGTCCGG-CTGGG
127 CCCGCTGCCACAACCCTCAGTCCGGTCT-GA
* *
16718580 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGCATGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAATGAGCG-ATGGGCACTCAG
* * * * * * * *
16718645 CTGGCCGGAGAGGTAGAATGCATAAGCCGAGGATCAGCCCGGTCCCCTTTACGTGCTGCCGATCC
64 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATCC
16718710 TGCTATTGGT
Statistics
Matches: 225, Mismatches: 54, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 56 0.25
158 116 0.52
159 51 0.23
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAATGAGCGATGGGCACTCAGCC
GGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATCCCG
CTGCCACAACCCTCAGTCCGGTCTGA
Found at i:16718780 original size:26 final size:26
Alignment explanation
Indices: 16718751--16718803 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16718741 ACGATTCGAT
16718751 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16718777 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16718803 C
1 C
16718804 AAAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16719056 original size:12 final size:12
Alignment explanation
Indices: 16719028--16719062 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
16719018 CATGCTGCTA
*
16719028 ATCCCGCTGCCG
1 ATCCTGCTGCCG
16719040 ATCCTGCTGCCG
1 ATCCTGCTGCCG
*
16719052 ATCCTACTGCC
1 ATCCTGCTGCC
16719063 ACAACCCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.11, C:0.46, G:0.20, T:0.23
Consensus pattern (12 bp):
ATCCTGCTGCCG
Found at i:16720025 original size:26 final size:26
Alignment explanation
Indices: 16719987--16720039 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16719977 TCAGTCTGAT
16719987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16720013 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16720039 C
1 C
16720040 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16720217 original size:158 final size:156
Alignment explanation
Indices: 16720013--16720506 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 156
16720003 ACTCCGTATG
16720013 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCAGGCGCTTAGC
* * *
16720078 CGGCCGGAGAGGTAGAATGCGCAAG-CGAGAGAATCAGCCCGGCCCCCCTGCGTGCTGTCGATCT
66 CGGCCGGAGAGGTAGAATGCACAAGCCGAG-G-ATC-GCCCGTCCCCCCTGCGTGCTGTCGATCC
*
16720142 TGCTGCTACAACCCTCGATCTGATCTGAT
128 TGCTGCTACAACCCTCGATCTGACCTGAT
* * * *
16720171 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGC-GAGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCAG-GCGCTTA
* * *
16720234 GCTGGCCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
64 GCCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCG-CCCG-TCCCCC-CTGCGTGCTGTCGAT
** * * * * **
16720299 CCCACTACCACAACCCTCGGTCTG-GCTAGGG
126 CCTGCTGCTACAACCCTCGATCTGACCT-GAT
* * * * *
16720330 CTAACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTG-A-GCGCTTA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT--GAACGTGCAGGCGCTTA
* * * * *
16720393 GCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCAATCCCCCCTACGTGCTG-CTGAT
64 GCCGGCCGGAGAGGTAGAATGCACAAGCCGAGGA-TCGCCC-GTCCCCCCTGCGTGCTGTC-GAT
* *
16720457 CCTGCTG-TCGCAACCCTC-AGTCTGACCCGAT
126 CCTGCTGCT-ACAACCCTCGA-TCTGACCTGAT
16720488 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16720507 TTGTATGCTT
Statistics
Matches: 271, Mismatches: 47, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
156 1 0.00
157 11 0.04
158 130 0.48
159 122 0.45
160 3 0.01
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCAGGCGCTTAGC
CGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCGCCCGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCTACAACCCTCGATCTGACCTGAT
Found at i:16720367 original size:159 final size:158
Alignment explanation
Indices: 16720018--16720451 Score: 493
Period size: 159 Copynumber: 2.7 Consensus size: 158
16720008 GTATGCTTAG
*
16720018 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGC-AGGCGCTTAGCCGGC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGA-GCGCTTAGCCGGC
* * ***
16720082 CGGAGAGGTAGAATGCGCAAG-CGAGAGAATC-AGCCCG-GCCCCCCTGCGTGCTGTCGATCTTG
65 CGGAGAGGTAGAATGCACAAGCCGAG-G-ATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCCCA
* * * * * *
16720144 CTGCTACAACCCTCGATCTGATCTGATCTTAG
127 CTACCACAACCCTCGATCTGAGCTGAGCTAAC
* * * *
16720176 AC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGCTGGC
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTTAGCCGGC
* *
16720240 CGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCACT
65 CGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCCACT
* *
16720305 ACCACAACCCTCGGTCTG-GCTAGGGCTAAC
129 ACCACAACCCTCGATCTGAGCT-GAGCTAAC
* * * * *
16720335 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGAGCGCTTAGCCGGTC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTTAGCCGGCC
* * * * *
16720400 GGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCAATCCCCCCTACGTGCTG
66 GGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTG
16720452 CTGATCCTGC
Statistics
Matches: 232, Mismatches: 36, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
157 8 0.03
158 91 0.39
159 132 0.57
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTTAGCCGGCC
GGAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCACTAC
CACAACCCTCGATCTGAGCTGAGCTAAC
Found at i:16721248 original size:26 final size:26
Alignment explanation
Indices: 16721210--16721262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16721200 GGCTCAAAAT
* *
16721210 CTTAGACTGGGAATGATCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16721236 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16721262 C
1 C
16721263 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16721691 original size:20 final size:20
Alignment explanation
Indices: 16721654--16721692 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16721644 ATGGATCGGC
*
16721654 CCGATCCCCCCTATGTGCTA
1 CCGATCCCCCCTACGTGCTA
*
16721674 CCGATCCCCCCTGCGTGCT
1 CCGATCCCCCCTACGTGCT
16721693 GTTGACCCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.49, G:0.18, T:0.23
Consensus pattern (20 bp):
CCGATCCCCCCTACGTGCTA
Found at i:16723007 original size:159 final size:159
Alignment explanation
Indices: 16722601--16723010 Score: 420
Period size: 159 Copynumber: 2.6 Consensus size: 159
16722591 TCCTAGACTG
* * *
16722601 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAG
* * **** * * * * *
16722666 AGGCATAATGTGCACGTCGGGGATCGGTTTGGTACCCCCTGCGTGCTGTGGATCCTGCTGCCGCA
66 AGGCATAATGCGCAAGTCGGGGATCGACCAGATACCCCCTACATGCTGCGGATCCTGCTGCCACA
* * *
16722731 ACCCTTGGTCCAGTCTGATCTTAGACTAT
131 ACCCTCGGTCCAGGCTGAGCTTAGACTAT
* * * * * *
16722760 -GAATGAACTCCGTATACATAAGTCAACCCACGAAATGAGCGTGCGGGCGC-AAAGCCGATCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGATCGGA
* * *
16722823 GAGGCATAACGCGTAAGTCGAGGATCGACCAGAT-CTCCCTCTACATGCTGCCGG-TCCTGCTGC
65 GAGGCATAATGCGCAAGTCGGGGATCGACCAGATAC-CCC-CTACATGCTG-CGGATCCTGCTGC
*
16722886 CACAACCCTCGGTCC-GGCTGGGGCTTAGAC-AT
127 CACAACCCTCGGTCCAGGCT-GAGCTTAGACTAT
* * *
16722918 GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTCAACCGATCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAACCGATCGGA
* * *
16722982 GAGGCAGAATGCACAAGCCGGGGATCGAC
65 GAGGCATAATGCGCAAGTCGGGGATCGAC
16723011 TCGGTCTCTA
Statistics
Matches: 201, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 84 0.42
159 110 0.55
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAG
AGGCATAATGCGCAAGTCGGGGATCGACCAGATACCCCCTACATGCTGCGGATCCTGCTGCCACA
ACCCTCGGTCCAGGCTGAGCTTAGACTAT
Found at i:16723506 original size:26 final size:26
Alignment explanation
Indices: 16723456--16723508 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16723446 CTGATCTAAT
*
16723456 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAATCTCGTATG
*
16723482 CTTAGACTGGGGATGAA-CTCTGTATG
1 CTTAGACTGGGAATGAATCTC-GTATG
16723508 C
1 C
16723509 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATCTCGTATG
Found at i:16723870 original size:26 final size:26
Alignment explanation
Indices: 16723832--16723884 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16723822 CCAGTCTGAT
** *
16723832 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACAAGGAAAGAACTCGGTATG
* *
16723858 CTTAGACAAGGAAAGCACTCTGTATG
1 CTTAGACAAGGAAAGAACTCGGTATG
16723884 C
1 C
16723885 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAAAGAACTCGGTATG
Found at i:16724371 original size:26 final size:26
Alignment explanation
Indices: 16724335--16724387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16724325 CTGATTTGAT
16724335 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16724361 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16724387 C
1 C
16724388 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16725443 original size:26 final size:26
Alignment explanation
Indices: 16725414--16725480 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
16725404 TAGACTAGGA
16725414 ATGAACTCTGTATGCTTAGTCTGGGG
1 ATGAACTCTGTATGCTTAGTCTGGGG
*
16725440 ATGAACTCTATATGCTTAGTCTGGGG
1 ATGAACTCTGTATGCTTAGTCTGGGG
16725466 ATGAACTCTGTATGC
1 ATGAACTCTGTATGC
16725481 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.34
Consensus pattern (26 bp):
ATGAACTCTGTATGCTTAGTCTGGGG
Found at i:16725844 original size:26 final size:26
Alignment explanation
Indices: 16725806--16725858 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16725796 TCGGTTCGAT
*
16725806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16725832 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16725858 C
1 C
16725859 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16726331 original size:166 final size:159
Alignment explanation
Indices: 16725938--16726331 Score: 364
Period size: 160 Copynumber: 2.4 Consensus size: 159
16725928 ATCAGCCCGG
* * * * *
16725938 TCCCCCTTGTGTACTG-TCGATCCTAGTGTCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGA
1 TCCCCCTTGTGTGCTGCT-GATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGA
* * * * * *
16726002 ATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGCACGGCCAGAGAG
65 ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCGGAGCACGACCAGAGAG
* * * ** *
16726067 GCATAATGCGCAAGCCGGGGATCGGTCCGA
130 GCAGAATGCACAAGCCGAGGATCGACCCAA
* * ** * * * **
16726097 TCCCCCTCCGCGTGCTGCT-AGTCCCGCTGCCACAACCGTCAATCCGA-CTAGGGCTTAGACAT-
1 TCCCCCT-TGTGTGCTGCTGA-TCCTACTGCCGCAACCCTCAGTCCGATCT-GATCTTAGAC-TG
* *
16726159 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGTACGGGAGCTCAACC
62 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCG--C-GGAG--C-A-C
* *
16726224 GACCGGAGAGGCAGAATGCATAAGCCGAGGATCGACCCAA
120 GACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAA
* *
16726264 TCCCCCTTGTGTGCTGCTGATCCTACTACCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAA
1 TCCCCCTTGTGTGCTGCTGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAA
16726329 TGA
66 TGA
16726332 GCTCTGTATG
Statistics
Matches: 179, Mismatches: 41, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
159 10 0.06
160 75 0.42
161 2 0.01
162 1 0.01
163 3 0.02
165 2 0.01
166 44 0.25
167 42 0.23
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
TCCCCCTTGTGTGCTGCTGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAA
TGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCGGAGCACGACCAGAGAGG
CAGAATGCACAAGCCGAGGATCGACCCAA
Found at i:16726345 original size:26 final size:26
Alignment explanation
Indices: 16726316--16726368 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16726306 CCGATCTGAT
*
16726316 CTTAGA-CTGGGAATGAGCTCTGTATG
1 CTTAGATC-GGGAATGAACTCTGTATG
*
16726342 CTTAGATCGGGGATGAACTCTGTATG
1 CTTAGATCGGGAATGAACTCTGTATG
16726368 C
1 C
16726369 CTAATCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCTGTATG
Found at i:16726966 original size:11 final size:11
Alignment explanation
Indices: 16726947--16726978 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
16726937 AGTTAGGCTT
16726947 TCCGATGATGC
1 TCCGATGATGC
*
16726958 TCCGGTGATGC
1 TCCGATGATGC
16726969 TCCGATGATG
1 TCCGATGATG
16726979 GTGCCCCGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.28
Consensus pattern (11 bp):
TCCGATGATGC
Found at i:16727589 original size:26 final size:26
Alignment explanation
Indices: 16727550--16727603 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
16727540 GGTCTGATCT
*
16727550 TAGACTGAGAATGAACTTCATATGCC
1 TAGACTGAGAATGAACTCCATATGCC
* * *
16727576 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCATATGCC
16727602 TA
1 TA
16727604 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCATATGCC
Found at i:16727944 original size:26 final size:26
Alignment explanation
Indices: 16727915--16727967 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16727905 CTAGTCCGAT
16727915 CTTAGAC-TACGAATGAACTCCGTATG
1 CTTAGACAT-CGAATGAACTCCGTATG
*
16727941 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATCGAATGAACTCCGTATG
16727967 C
1 C
16727968 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATCGAATGAACTCCGTATG
Found at i:16728696 original size:159 final size:159
Alignment explanation
Indices: 16728124--16728783 Score: 520
Period size: 158 Copynumber: 4.2 Consensus size: 159
16728114 TCTGACTGGG
* *
16728124 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTG-GGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * *
16728187 ACCGATCG-AGAGGCAGAATGC-TCAAGCC-GAGGATCGGCCCGATCCCCCCCTGCGTGCTGCCG
65 GCCGGCCGAAGAGGCAGAATGCGT-AAGCCAG-GGATCGACCTGATCCCCCCCTGCGTGCTGCCG
** *
16728249 ATC-CTGCTGTTGTAACCCTCGGTCCGGTCCGA
128 ATCTC-GCTGCCGCAACCCTCGGTCCGGTCCGA
* * * * * * *
16728281 TCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAAGCAATGAAACGAGTGTGCGGGCGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** **
16728346 CCGGCCGGAGAGGTAGAATGCATAAGCCAGGGATTGA-CTCG-GCCCCCCCCACGTGCTGTTGAT
66 CCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCT-GATCCCCCCCTGCGTGCTGCCGAT
* * * * * *
16728409 GCT-ACTACCGCAACCCTCAGTCTGATCCAA
130 -CTCGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * * * * * *
16728439 TCGTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGAC
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * *
16728504 CCGGCC-AGAGAGGCATAATGCGCAAGTTGGGGATCGACCTGATCCCCCTCTGCGTGCTGCCGGT
66 CCGGCCGA-AGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCCTGCGTGCTGCCGAT
* * ** *
16728568 CTCGCTGCCACAATCCTCGGTCCGGTTGGG
130 CTCGCTGCCGCAACCCTCGGTCCGGTCCGA
* * *
16728598 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
16728662 GTCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATTGTCC-CAGT-CCCCCTTACGTCCTGCCGA
65 GCCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGA-TCCCCCCCTGCGTGCTGCCGA
* * * *
16728725 TC-CTGCTGTCTCAACCCTCGGTCTGGTCTGA
129 TCTC-GCTGCCGCAACCCTCGGTCCGGTCCGA
* *
16728756 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
16728784 TTAGACTGGG
Statistics
Matches: 386, Mismatches: 100, Indels: 33
0.74 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 48 0.12
158 192 0.50
159 141 0.37
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCCTGCGTGCTGCCGATC
TCGCTGCCGCAACCCTCGGTCCGGTCCGA
Found at i:16728742 original size:317 final size:315
Alignment explanation
Indices: 16728134--16728783 Score: 728
Period size: 317 Copynumber: 2.1 Consensus size: 315
16728124 GCTTAGACAT
** *
16728134 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGGGGCGCTCAACCGATCGAGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGGGGCGCTCAACCGACCGAGAG
* * ****
16728199 GCAGAATGCTCAAGCCGAGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGTTGTAA
66 GCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAA
* * * *
16728264 CCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAAGCAATGAAACG
131 CCCTCGGTCCGGTCCGAGCTTAAACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACG
* * * * * *
16728329 AGTGTGCGGGCGCTTAGCCGGCCGGAGAGGTAGAATGCATAAGCCAGGGATTGACTCGGCCCCCC
196 AGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCCAGGGATTGACCCAGCCCCCC
* ** *
16728394 CCACGTGCTGTTGATGCTACTACCGCAACCCTCAGTCTGATCCAATCGTAGACTG
261 CCACGTCCTGCCGATCCTACTACCGCAACCCTCAGTCTGATCCAATCGTAGACTG
* * * * *
16728449 GGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTGACCCGGCCAGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTG-GGGCGCTCAACCGACC-GAG
* ** * * * *
16728514 AGGCATAATGCGCAAGTTGGGGATCGACCTGATCCCCCTCTGCGTGCTGCCGGT-CTCGCTGCCA
64 AGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCT-GCTGCCA
* ** * * *
16728578 CAATCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGA
128 CAACCCTCGGTCCGGTCCGAGCTTAAAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCAACGA
* * * * * *
16728642 AACGGGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATTGTCCCAGTC
192 AACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCCAGGGATTGACCCAGCC
** * ** * * * ** *
16728707 CCCCTTACGTCCTGCCGATCCTGCTGTCTCAACCCTCGGTCTGGTCTGATCTTAGACTG
257 CCCCCCACGTCCTGCCGATCCTACTACCGCAACCCTCAGTCTGATCCAATCGTAGACTG
16728766 GGAATGAACTCTGTATGC
1 GGAATGAACTCTGTATGC
16728784 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 58, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
315 41 0.15
316 13 0.05
317 218 0.80
318 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (315 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGGGGCGCTCAACCGACCGAGAG
GCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAA
CCCTCGGTCCGGTCCGAGCTTAAACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCCAGGGATTGACCCAGCCCCCC
CCACGTCCTGCCGATCCTACTACCGCAACCCTCAGTCTGATCCAATCGTAGACTG
Found at i:16728786 original size:26 final size:26
Alignment explanation
Indices: 16728757--16728809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16728747 CTGGTCTGAT
*
16728757 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16728783 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16728809 C
1 C
16728810 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16729408 original size:11 final size:11
Alignment explanation
Indices: 16729388--16729420 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16729378 CGGTTAGGCT
16729388 CTCCGGCGATG
1 CTCCGGCGATG
*
16729399 CTCTGGCGATG
1 CTCCGGCGATG
16729410 CTCCGGCGATG
1 CTCCGGCGATG
16729421 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.33, G:0.36, T:0.21
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:16729977 original size:26 final size:26
Alignment explanation
Indices: 16729948--16730000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16729938 CTGATCCGAT
*
16729948 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16729974 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16730000 C
1 C
16730001 CTCAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16730164 original size:25 final size:26
Alignment explanation
Indices: 16730136--16730187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16730126 CCGGTCCAAT
16730136 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16730161 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16730187 C
1 C
16730188 CTAAGGCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16730676 original size:26 final size:26
Alignment explanation
Indices: 16730635--16730687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16730625 CTGGTCTGAT
16730635 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
16730661 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
16730687 C
1 C
16730688 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16740031 original size:26 final size:26
Alignment explanation
Indices: 16740002--16740053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16739992 CGATCCAAAG
16740002 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
16740028 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
16740054 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:16740294 original size:158 final size:157
Alignment explanation
Indices: 16740026--16740390 Score: 384
Period size: 158 Copynumber: 2.3 Consensus size: 157
16740016 AACTCCATAT
* *
16740026 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
16740091 CCCACCGGAGATGCAGAATGCAGAAGTCGGGGACTGACCTGGTCCCCC-CTGCGTGTCAT-CGAT
66 CCCACCGAAGAGGCAAAATGCA-AAGCCGGGGACAGACCTGGTCCCCCTCTGCGTG-C-TGCGAT
16740154 C-CTGCTACCAAAACCCTCAGTCCGATCT-GA
128 CTC-GCTACCAAAACCCTCAGTCCGA-CTGGA
* * * * * *
16740184 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
* * *
16740248 GCCGACCGAAGAGGCATAATATGC-AAGCCGGGGATCAGGCCT-GTCCCCCTTTGCGTGCTGGCG
65 GCCCACCGAAGAGGCA-AA-ATGCAAAGCCGGGGA-CAGACCTGGTCCCCCTCTGCGTGCT-GCG
* * * * *
16740311 GTCTCGCTGCCACAACCCTCGGTCCGACTGGG
126 ATCTCGCTACCAAAACCCTCAGTCCGACTGGA
* *
16740343 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAATG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG
16740391 GATGTACGAG
Statistics
Matches: 172, Mismatches: 25, Indels: 19
0.80 0.12 0.09
Matches are distributed among these distances:
157 2 0.01
158 86 0.50
159 78 0.45
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCCACCGAAGAGGCAAAATGCAAAGCCGGGGACAGACCTGGTCCCCCTCTGCGTGCTGCGATCTC
GCTACCAAAACCCTCAGTCCGACTGGA
Found at i:16740531 original size:26 final size:26
Alignment explanation
Indices: 16740502--16740554 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16740492 TCGGTCCGAT
16740502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16740528 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16740554 C
1 C
16740555 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16740896 original size:53 final size:53
Alignment explanation
Indices: 16740816--16740925 Score: 148
Period size: 53 Copynumber: 2.1 Consensus size: 53
16740806 ATCGACCCGA
*** * * * *
16740816 TCCCCCCTACGTGCTGTTGATCCTGCTGTTGGTCCTGTTGCCGTAACCCTCGG
1 TCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGG
*
16740869 TCCCCCCTATGTGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGG
1 TCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGG
16740922 TCCC
1 TCCC
16740926 GATCCGAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.09, C:0.41, G:0.22, T:0.28
Consensus pattern (53 bp):
TCCCCCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGG
Found at i:16741310 original size:26 final size:26
Alignment explanation
Indices: 16741281--16741330 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16741271 ATCCGATCTG
16741281 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
16741307 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
16741331 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:16741659 original size:170 final size:169
Alignment explanation
Indices: 16741303--16741670 Score: 395
Period size: 170 Copynumber: 2.2 Consensus size: 169
16741293 AACTCCGTAT
* * *
16741303 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGAGCTCAG
1 GCTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACAAGCGT-CGGGAGCTCAG
* * *
16741368 CCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTTGATC
65 CCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATC
* *
16741433 CTGCTGCCGGTCTGCTACCATGACACTCGGTCCGGCTGGG
130 CTGCTGCCGGTCTGCTACCATAACACTCGGTCCGGCTGGA
* * * * * *
16741473 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGAGCGT-GTGTGCTT
1 GCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAA-CA-AGCGTCGGGAGCTC
** * * *
16741536 AGCC-GACCGGAGAGGCAAAATTTGCAAGCCGTGGATCGGCCTGAT-CCCCTCTGCGTGTTGTCG
63 AGCCAG-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCG
* ** * * * *
16741599 ATCCTGCTGCTGGTCTTGCTGTCGTAACCCTTGGTCTGGTCT-GA
127 ATCCTGCTGCCGGTC-TGCTACCATAACACTCGGTCCGG-CTGGA
*
16741643 TCTTAGAATGGGAATGAACTCTGTATGC
1 GCTTAGAATGGGAATGAACTCTGTATGC
16741671 TTAGACATGG
Statistics
Matches: 164, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
169 33 0.20
170 122 0.74
171 4 0.02
172 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (169 bp):
GCTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACAAGCGTCGGGAGCTCAGC
CAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGATCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGGTCTGCTACCATAACACTCGGTCCGGCTGGA
Found at i:16741673 original size:26 final size:26
Alignment explanation
Indices: 16741644--16741696 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16741634 CTGGTCTGAT
*
16741644 CTTAGA-ATGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16741670 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16741696 C
1 C
16741697 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16743171 original size:54 final size:54
Alignment explanation
Indices: 16743089--16743192 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 54
16743079 GGATCGACCC
* * *
16743089 GATCCCCCCTTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGGTGCCT
1 GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGGTGCCT
*
16743143 GATCCCCCCTTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCCGGT
1 GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGGT
16743193 CCAATCTTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.12, C:0.42, G:0.22, T:0.24
Consensus pattern (54 bp):
GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGGTGCCT
Found at i:16743446 original size:159 final size:158
Alignment explanation
Indices: 16743144--16743586 Score: 399
Period size: 159 Copynumber: 2.8 Consensus size: 158
16743134 CCGGTGCCTG
* * * * *** *
16743144 ATCCCCCCTTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCCGGTCCAATCTTAGACTTGG
1 ATCCCCCC-TACGTGCTGTAGATCCCACTGCCACAACCCTCGATCCGCTGGGATCTTAGACTAGG
* * * * * ** * * *
16743209 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCAGGCATTGAGCCAACC-AGAGA
65 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGA-AAA
* ** * *
16743273 GGCATAATGTGCAAGCCGGGGATCGACCCA
129 AGCGGAATGCGCAAGCCAGGGATCGACCCA
* * * * *
16743303 ATCGCCCTCTGCGTGCTGCTAG-TCCCGCTGCCACAACCCTCGGTCCGACTGGGGT-TTAGAC-A
1 ATC-CCCCCTACGTGCTG-TAGATCCCACTGCCACAACCCTCGATCCG-CTGGGATCTTAGACTA
* *
16743365 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGAA
63 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
** *
16743430 AAAGCGGAATGCGCAAGTTAGGGATCGGCCCA
127 AAAGCGGAATGCGCAAGCCAGGGATCGACCCA
* * * ** * * * ** *
16743462 GTCCCCCCTACGTGCTGTCGATCCTACTTTCATAACCCTCGATTCGGTTTGATCTTAGACTAGGG
1 ATCCCCCCTACGTGCTGTAGATCCCACTGCCACAACCCTCGATCCGCTGGGATCTTAGACTAGGA
*
16743527 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGA
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGA
16743587 GAGGCAAGAT
Statistics
Matches: 226, Mismatches: 50, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 95 0.42
159 117 0.52
160 9 0.04
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
ATCCCCCCTACGTGCTGTAGATCCCACTGCCACAACCCTCGATCCGCTGGGATCTTAGACTAGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAAAAG
CGGAATGCGCAAGCCAGGGATCGACCCA
Found at i:16744758 original size:158 final size:158
Alignment explanation
Indices: 16744196--16744947 Score: 522
Period size: 158 Copynumber: 4.7 Consensus size: 158
16744186 TGTCACTCAA
*
16744196 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * *
16744261 AGTCGACTGGAGAAGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
66 AATCGACCGGAGAAGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGA
** * *
16744325 TCCTGCTG-TCACAACCCTCGGTCTGATCT
131 TCCCACTGCT-ACAACCCTC-GTCCGGTCT
* * * ** * * *
16744354 GATCTTAGACTAGGAATGAACTCCGTATGCATAAGTTAACCCACAAAACGAGTGTGCAGGTGCT-
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * * * *
16744418 GAGCTGGCTGGAGAGGCATAATGC-CTAAGCC-GAGGATCAGCCTGGTCCCCCTCTGTGTGCT-A
66 AATC-GACCGGAGAAGCAGAATGCGC-AAGCCAG-GGATCAGCCCGGTCCCCCTCTGCGTGCTGT
* * * *
16744480 CCAGTCCCGCTGCCACAACCCTCGATCC-GACT
128 CGA-TCCCACTGCTACAACCCTCG-TCCGGTCT
* * * * * *
16744512 -GTGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGGGGGCG
1 AAT--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
* * ** * *** **
16744575 CTCGACCGGTCGGAGAAGCAGAATGCGGAAGTTGGGGATTGGCCCGGT-CCCCTCTGCGTGCTGT
63 CTCAATCGACCGGAGAAGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGT
* * *
16744639 CGATCCTACTGCTGCAACCTTCAGTCCGGTCT
128 CGATCCCACTGCTACAACCCTC-GTCCGGTCT
* * * *
16744671 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACACATGAAACGAGCGTGCGGGTGCTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * *
16744736 AATCGACCAGA-AAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCG
66 AATCGACCGGAGAA-GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCG
* * *
16744800 ATCCCACTGCCGGTCCTGCTGCCACAAACCCTCGATCAGAAT-G
130 ATCCCA---------CTGCT---AC-AACCCTCG-TCCG-GTCT
*** * *
16744843 GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCT
1 AATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * *
16744907 CAGTCGATCGGAGAGGCAGAATACGCAAGTCAGGGATCAGC
65 CAATCGACCGGAGAAGCAGAATGCGCAAGCCAGGGATCAGC
16744948 TCAATCCCCT
Statistics
Matches: 452, Mismatches: 105, Indels: 60
0.73 0.17 0.10
Matches are distributed among these distances:
157 7 0.02
158 207 0.46
159 129 0.29
160 6 0.01
168 5 0.01
171 2 0.00
172 93 0.21
173 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
AATCGACCGGAGAAGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGA
TCCCACTGCTACAACCCTCGTCCGGTCT
Found at i:16744774 original size:317 final size:324
Alignment explanation
Indices: 16744199--16744944 Score: 802
Period size: 317 Copynumber: 2.3 Consensus size: 324
16744189 CACTCAAAAT
* * *
16744199 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTCAG
* *
16744263 TCGACTGGAGAAGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACTGGAGAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
16744328 TGCTGTCACAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTTAA
130 TACTGTCACAACCCTCAGTCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAA
* * * * ** *
16744393 CCCACAAAACGAGTGTGCAGGTGCTGAGCTGGCTGGAGAGGCATAATGCCTAAGCCGAGGATCAG
195 CACACAAAACGAGCGTGCAGGTGCTAAGCTGACCAGAAAGGCATAATGCCTAAGCCGAGGATCAG
* * * *
16744458 CCTGGTCCCCCTCT-GTG-TG-C-T-A-CCAGTCCCGCTGCCAC-AACCCTCGATCCGACTGTGG
260 CCCGGTCCCCCTCTAGTGCTGCCATCACCCAGTCCCGCTGCCACAAACCCTCGATCAGAATGGGG
* * *
16744516 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGGGGGCGCTC-GA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTCAG-
* * *** * *
16744580 CCG-GTCGGAGAAGCAGAATGCGGAAGTTGGGGATTGGCCCGGTCCCCTCTGCGTGCTGTCGATC
65 CCGACT-GGAGAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
16744644 CTACTG-CTGCAACCTTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
129 CTACTGTC-ACAACCCTCAGTCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCATAAGTC
** * *
16744708 AACACATGAAACGAGCGTGCGGGTGCTCAATC-GACCAGAAAGGCATAATGCAC-AAGCC-AGGG
193 AACACACAAAACGAGCGTGCAGGTGCT-AAGCTGACCAGAAAGGCATAATGC-CTAAGCCGA-GG
* *
16744770 ATCAGCCCGGTCCCCCTCTACGTGCTGCCGATCCCACTGCCGGTCCTGCTGCCACAAACCCTCGA
255 ATCAGCCCGGTCCCCCTCTA-GTGCTGCC-AT--CAC--CCAGTCCCGCTGCCACAAACCCTCGA
16744835 TCAGAATGGGG
314 TCAGAATGGGG
* ** * *
16744846 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTCAGC
* * *
16744911 CGA-TCGGAGAGGCAGAATACGCAAGTCAGGGATC
66 CGACT-GGAGAAGCAGAATGCGCAAGCCAGGGATC
16744945 AGCTCAATCC
Statistics
Matches: 350, Mismatches: 57, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
316 4 0.01
317 220 0.63
318 4 0.01
319 3 0.01
320 2 0.01
321 1 0.00
323 1 0.00
326 1 0.00
329 14 0.04
330 99 0.28
331 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (324 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCGCTCAGC
CGACTGGAGAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCACAACCCTCAGTCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAAC
ACACAAAACGAGCGTGCAGGTGCTAAGCTGACCAGAAAGGCATAATGCCTAAGCCGAGGATCAGC
CCGGTCCCCCTCTAGTGCTGCCATCACCCAGTCCCGCTGCCACAAACCCTCGATCAGAATGGGG
Found at i:16745501 original size:26 final size:26
Alignment explanation
Indices: 16745465--16745517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16745455 CTGGTCTGAT
16745465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16745491 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16745517 C
1 C
16745518 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16747290 original size:26 final size:26
Alignment explanation
Indices: 16747249--16747301 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16747239 CCGATCTAAT
*
16747249 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16747275 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16747301 C
1 C
16747302 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16747659 original size:27 final size:27
Alignment explanation
Indices: 16747617--16747671 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
16747607 CTGGTTCGAT
16747617 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
16747644 CTTAGACTGGCG-ATGAAACTCCGTATG
1 CTTAGACTGG-GAATGAAACTCCGTATG
16747671 C
1 C
16747672 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:16748654 original size:161 final size:158
Alignment explanation
Indices: 16748380--16748669 Score: 334
Period size: 161 Copynumber: 1.8 Consensus size: 158
16748370 AACTCCATAT
* * * *
16748380 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* * * * * *
16748445 CCAGCCGGAGAGGCATAATGTGTAAGCTGGGGATCGACCCGGTCCCCCTCTACATGGCTATCGAT
66 CCAGCCGGAAAGGCAGAATGCGCAAGCAGGGGATCGACCCGAT-CCCC-CTACAT-GCTATCGAT
16748510 CCCGCTGCCACAACCCTTAGTTTTCGCTGGG
128 CCCGCTGCCACAACCCTTAGTTTTCGCTGGG
* * *
16748541 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCGAT-GAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
* * * * * *
16748605 TC-GATCGGAAAGGTAGAATGCGCGAGCCAGGGGATCGGTCCC-ATCCCCCTGCATGCTATCGAT
66 CCAG-CCGGAAAGGCAGAATGCGCAAG-CAGGGGATC-GACCCGATCCCCCTACATGCTATCGAT
16748668 CC
128 CC
16748670 TGCTACCCGC
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
158 11 0.10
159 6 0.06
160 37 0.35
161 49 0.46
162 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAG
CCAGCCGGAAAGGCAGAATGCGCAAGCAGGGGATCGACCCGATCCCCCTACATGCTATCGATCCC
GCTGCCACAACCCTTAGTTTTCGCTGGG
Found at i:16748807 original size:13 final size:13
Alignment explanation
Indices: 16748789--16748814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16748779 CGGGTGCTCA
16748789 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
16748802 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
16748815 ACATAATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:16749801 original size:26 final size:26
Alignment explanation
Indices: 16749763--16749815 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16749753 ACGGTCTAAT
16749763 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16749789 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16749815 C
1 C
16749816 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16750311 original size:25 final size:26
Alignment explanation
Indices: 16750265--16750316 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16750255 TCGGTCCGAT
16750265 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16750291 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16750316 C
1 C
16750317 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16751222 original size:26 final size:25
Alignment explanation
Indices: 16751179--16751230 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16751169 CTGGTCCAAT
*
16751179 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATAAACTCCGTATG
*
16751204 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGAC-TGGAATAAACTCCGTATG
16751230 C
1 C
16751231 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGTATG
Found at i:16751360 original size:537 final size:535
Alignment explanation
Indices: 16750387--16751410 Score: 1213
Period size: 537 Copynumber: 1.9 Consensus size: 535
16750377 GGGATAATAA
* * * *
16750387 CACAAGTCGGGGATCAGCCCGGTCCCCTCTACATGCTGCGATCCGGTTACCGATCCTGCTGCCAC
1 CACAAGCCGAGGATCAGCCCGGTCCCCTCTACATGCTGCGATCCCGTTACCGATCCTGCTACCAC
* * *
16750452 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAAGGAAA
66 AACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCAAGGAAA
* * * * * * * * * *
16750517 TGAGCGTGTGGGTGTTGAGCCAGCAGGAGAGGCAGAATGCGTAAGCTGGGGAACGGCTCGGTCCC
131 TGAGCGTGCGGGGGCTCAACCAGCAGAAAAGACAGAATGCGCAAGCTGGGGAACGGCTCGATCCC
* * * *
16750582 CCCCTACGTGCTACTGATCCTACTGTTGGACCTGCAGCCACAACCCTCGGTTCAGTTCGATCTTA
196 CCCCTACGAGCTACTGATCCTACTGTTGGACATGCAGCCACAACCCTCGGTTCAGTCCAATCTTA
* * *
16750647 GACTGGGAATGAACTCTGTATGCCTAGACATGGAATGAACTCCATATGCCTGAGCCAACCCACGA
261 GACTGGGAATGAACTCCGTATGCCTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGA
* * ** * *
16750712 ATGAGCGTGTCGGCACTCAAACCGGCCAGAGAGGCGAATGCGTAAACTGGGGGCTGACCAGATCC
326 ATGAGCGTGTCGGCACTCAAACCAGCCAGAGAGCCGAATGCGTAAACCAGGGACCGACCAGATCC
* * * *
16750777 CCTTGCGTGCTGTCGATCCTGCTACCATAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA
391 CCTTGCGTGCTATCGATCCTGATACCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAA
16750842 CTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGGTAGGCTGGAGAGGCCTAT
456 CTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGGTAGGCTGGAGAGGCCTAT
16750907 CGAATAGGCATAATG
521 CGAATAGGCATAATG
* * *
16750922 CACAAGCCGAGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGTTGCC-ACTCCTGCTAC
1 CACAAGCCGAGGATCAGCCCGGT-CCCCTCTACATGCTG-CGATCCCGTTACCGA-TCCTGCTAC
* ** * * *
16750986 GACAACCCTCGGTTTGACTGGGGCTTACACATGTAATGAACTCCGTATGCCTAAGCCAACCCATG
63 CACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCAAGG
* * * ** *
16751051 AAATGAGCGTGCGGGGGCTCAACCGGCCGAAAAGACAGAATTCGCAAGCTGGGGATTGGTTCGAT
128 AAATGAGCGTGCGGGGGCTCAACCAGCAGAAAAGACAGAATGCGCAAGCTGGGGAACGGCTCGAT
* * ** * * *
16751116 -CCCCCCTGCGAGCT-GTCGATCCTGGTGTTGGTCATGCTATCGCA-AA-CCTCGG-TCTGGTCC
193 CCCCCCCTACGAGCTACT-GATCCTACTGTTGGACATGC-AGC-CACAACCCTCGGTTC-AGTCC
* **
16751176 AATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAA
254 AATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATAAACTCCATATGCCTAAGCCAA
* * * * *
16751240 CCCACGAAATGAGCGTG-CGGGCGCTC-AGCCAGTCGGAGAGCCAGAATGCGTAAGCCAGGGACC
319 CCCACG-AATGAGCGTGTC-GGCACTCAAACCAGCCAGAGAGCC-GAATGCGTAAACCAGGGACC
* * * ** ** *
16751303 GACCCGATCCCCCTTGTGTGCTATCGAT-CTAGATGCTGCAACCCTTGGTCTGGTCCGATCTTAG
381 GACCAGAT-CCCCTTGCGTGCTATCGATCCT-GATACCACAACCCTCAGTCCGGTCCGATCTTAG
*
16751367 ACTAGGAATGAACTCCATATGCCTAAGTCAACCCACTAAATGAG
444 ACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAG
16751411 CGCGCGAGCA
Statistics
Matches: 404, Mismatches: 73, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
535 88 0.22
536 102 0.25
537 212 0.52
538 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (535 bp):
CACAAGCCGAGGATCAGCCCGGTCCCCTCTACATGCTGCGATCCCGTTACCGATCCTGCTACCAC
AACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCAAGGAAA
TGAGCGTGCGGGGGCTCAACCAGCAGAAAAGACAGAATGCGCAAGCTGGGGAACGGCTCGATCCC
CCCCTACGAGCTACTGATCCTACTGTTGGACATGCAGCCACAACCCTCGGTTCAGTCCAATCTTA
GACTGGGAATGAACTCCGTATGCCTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGA
ATGAGCGTGTCGGCACTCAAACCAGCCAGAGAGCCGAATGCGTAAACCAGGGACCGACCAGATCC
CCTTGCGTGCTATCGATCCTGATACCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAA
CTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGGTAGGCTGGAGAGGCCTAT
CGAATAGGCATAATG
Found at i:16752122 original size:26 final size:26
Alignment explanation
Indices: 16752084--16752136 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16752074 TGGTCAAACT
*
16752084 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
16752110 CTTAGACAT-GGAATGAACCCCGTATG
1 CTTAGAC-TGGGAATGAACCCCATATG
16752136 C
1 C
16752137 CTAAGCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:16753500 original size:27 final size:26
Alignment explanation
Indices: 16753454--16753533 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16753444 CTGGTCTGAT
* *
16753454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
*
16753480 CTTAGACTGGGGATGAAACTCTATATG
1 CTTAGACTGGGGATG-AACTCCATATG
16753507 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
16753533 C
1 C
16753534 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 25 0.51
27 24 0.49
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:16753683 original size:210 final size:209
Alignment explanation
Indices: 16753297--16753690 Score: 458
Period size: 209 Copynumber: 1.9 Consensus size: 209
16753287 TCCGGCTAGG
* * * *
16753297 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCACGAAACAGGCGTGCAGGTGCTCAGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCACGAAACAAGCGTACAGGCGCTCAGC
* * * * * * *
16753362 CAGCCGAGAGGCAGAATGCGAAATCCAGGGATCGGTCTGGTCCACCCTGCGTGCTATCGATCCTG
66 CAGCCGAGAGGCAGAATGCGAAATCCAAGGATCAGCCCGATCCACCCTACGTGCTACCGATCCTG
* * * *
16753427 CTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
131 CTGCCATAACCCTCGATCTCGACTGAGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
16753492 ATGAAACTCTATAT
196 ATGAAACTCTATAT
* * * *
16753506 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCATGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCACGAAACAAGCGTACAGGCGCTCAG
* *
16753570 CC-GACCGGAGAGGCATAATGCGAAAGT-CAAGGATCAGCCCGATCCTCCTCTACGTGCTACCGA
65 CCAG-CC-GAGAGGCAGAATGCGAAA-TCCAAGGATCAGCCCGATCCACC-CTACGTGCTACCGA
* * * *
16753633 TCTTGCTGCCATAACCCTTGGTC-CGACT-AGGCTTAGACAT-GGAATGAACTCTGTATGC
126 TCCTGCTGCCATAACCCTCGATCTCGACTGA-GCTTAGAC-TGGGAATGAACTCCGTATGC
16753691 CTAAGCCAAA
Statistics
Matches: 153, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
208 2 0.01
209 59 0.39
210 59 0.39
211 33 0.22
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (209 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCACGAAACAAGCGTACAGGCGCTCAGC
CAGCCGAGAGGCAGAATGCGAAATCCAAGGATCAGCCCGATCCACCCTACGTGCTACCGATCCTG
CTGCCATAACCCTCGATCTCGACTGAGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
ATGAAACTCTATAT
Found at i:16753867 original size:25 final size:25
Alignment explanation
Indices: 16753830--16753878 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
16753820 CCGGTCCGAT
*
16753830 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
16753855 CTTAGACAT-GAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
16753879 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:16762696 original size:26 final size:26
Alignment explanation
Indices: 16762658--16762710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16762648 TCGATTCGAA
16762658 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
16762684 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCATATG
16762710 C
1 C
16762711 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:16762951 original size:158 final size:158
Alignment explanation
Indices: 16762788--16763185 Score: 374
Period size: 159 Copynumber: 2.5 Consensus size: 158
16762778 GGACTGACCT
* *
16762788 GGTCCCCCCTACGTGCCGTCGATCCTGCTGCCAAAACCCTCAGTCCGGTCTGATCTTAGATTGGG
1 GGTCCCCCCTACGTGCTGTCGATCCTGCTGCCAAAACCCTCAGTCCGGTCTGATCTTAGAATGGG
* * * * * *
16762853 AATGAACTCCGTATGCCTAAGTCAACCCATGAAAT-GAGTGTTCGGGCATTGAGCCAACTAGAGA
66 AATGAACTCCATATGCCTAAGCCAACCCATGAAATGGA-TGTACGAGCACTCAGCCAACTAGAGA
* ** *
16762917 GGCATAATGCATGAGCCGGGGAT-CAGGCC
130 GGCAGAATGCACAAGCCGGGGATCCA-CCC
* * * * * * * * **
16762946 GGTCCCCCTCTGCGTGCTGTGGGTCCCGTTACCACAACCCTCAGTCCGAT-TGGGGCTTAGACAT
1 GGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCAAAACCCTCAGTCCGGTCT-GATCTTAGA-AT
* * *** *
16763010 -GGAATGAACTCCCTATGACTAAGCCAACCCATGAAATGGATGTACGAGCACTCAGCCGGTTGGA
63 GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGATGTACGAGCACTCAGCCAACTAGA
*
16763074 GAGGCAGAATGCGCAAGCCGGGGATCCACCC
128 GAGGCAGAATGCACAAGCCGGGGATCCACCC
* * * * * * * *
16763105 GATCCGCCCTACGTGCTATCAATCTTGCTGTCATAACCCTCAGTTCGGTCTGATCTTA-AACTGG
1 GGTCCCCCCTACGTGCTGTCGATCCTGCTGCCAAAACCCTCAGTCCGGTCTGATCTTAGAA-TGG
16763169 GAATGAACTCCATATGC
65 GAATGAACTCCATATGC
16763186 TTAGACTGGG
Statistics
Matches: 185, Mismatches: 47, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.01
157 2 0.01
158 58 0.31
159 119 0.64
160 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (158 bp):
GGTCCCCCCTACGTGCTGTCGATCCTGCTGCCAAAACCCTCAGTCCGGTCTGATCTTAGAATGGG
AATGAACTCCATATGCCTAAGCCAACCCATGAAATGGATGTACGAGCACTCAGCCAACTAGAGAG
GCAGAATGCACAAGCCGGGGATCCACCC
Found at i:16763195 original size:26 final size:26
Alignment explanation
Indices: 16763159--16763211 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16763149 TCGGTCTGAT
16763159 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* * *
16763185 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
16763211 C
1 C
16763212 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16763965 original size:26 final size:26
Alignment explanation
Indices: 16763936--16763988 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16763926 CTGATCCGAT
16763936 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
16763962 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16763988 C
1 C
16763989 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16764340 original size:26 final size:27
Alignment explanation
Indices: 16764302--16764360 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
16764292 CTGGTCTAAT
16764302 CTTAAA-ATGGGAATGAACTCCATATG
1 CTTAAACATGGGAATGAACTCCATATG
*
16764328 CTTAAACAT-GGAATGAACTCCGTATG
1 CTTAAACATGGGAATGAACTCCATATG
*
16764354 CCTAAAC
1 CTTAAAC
16764361 CAACCTACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
CTTAAACATGGGAATGAACTCCATATG
Found at i:16764838 original size:26 final size:26
Alignment explanation
Indices: 16764797--16764849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764787 TTGATTCGAT
16764797 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16764823 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
16764849 C
1 C
16764850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16765815 original size:55 final size:55
Alignment explanation
Indices: 16765751--16765854 Score: 172
Period size: 55 Copynumber: 1.9 Consensus size: 55
16765741 GGATCGACCG
* * *
16765751 GATCCCCCCTTGTGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGGATGCCT
1 GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGGATGCCT
*
16765806 GATCCCCCCTTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCCGG
1 GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
16765855 TCCAATCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.12, C:0.42, G:0.22, T:0.23
Consensus pattern (55 bp):
GATCCCCCCTTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGGATGCCT
Found at i:16767362 original size:158 final size:159
Alignment explanation
Indices: 16766858--16767362 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 159
16766848 TGTCACTCAA
*
16766858 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * *
16766923 -AGTCGACTGGAGAAGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGA
66 GAGCCGGCTGGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGA
* *
16766987 TCCTGCTG-TCACAACCCTCGGTCTGATCT
131 TCCTGCTGCT-ACAACCCTCGGTCCGGTCT
* * * ** * * *
16767016 GATCTTAGACTAGGAATGAACTCCGTATGCATAAGTTAACCCACAAAACGAGTGTGCAGGTGCT-
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * * * * *
16767080 GAGCTGGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCTGGTCCCCCTCTGTGTGCT-ACC
66 GAGCCGGCTGGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCG
* * *
16767144 AGTCCCGCTGCCACAACCCTCGGTCC-GACT
130 A-TCCTGCTGCTACAACCCTCGGTCCGGTCT
* * * * * *
16767174 -GTGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGGGGGCG
1 AAT--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
* ** *
16767237 CTCGA-CCGG-TCGGAGAAGCAGAATGCGGAAGTTGGGGATTGGCCCGGTCCCCTCTGCGTGCTG
63 CTCGAGCCGGCT-GGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTG
* * * *
16767300 TCGATCCTACTGCTGCAACCTTCAGTCCGGTCT
127 TCGATCCTGCTGCTACAACCCTCGGTCCGGTCT
*
16767333 AATCTTAGACTGGGAATGAACTCCATATGC
1 AATCTTAGACTGGGAATGAACTCCGTATGC
16767363 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 149 0.55
159 116 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
GAGCCGGCTGGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGA
TCCTGCTGCTACAACCCTCGGTCCGGTCT
Found at i:16767372 original size:26 final size:26
Alignment explanation
Indices: 16767336--16767388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16767326 CCGGTCTAAT
16767336 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16767362 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16767388 C
1 C
16767389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16768212 original size:26 final size:26
Alignment explanation
Indices: 16768176--16768228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16768166 CTGGTCTGAT
16768176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16768202 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16768228 C
1 C
16768229 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16769284 original size:26 final size:26
Alignment explanation
Indices: 16769233--16769285 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16769223 CCGGTTTGAT
* *
16769233 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16769259 CTTAGACTAGGTATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
16769285 C
1 C
16769286 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16769384 original size:184 final size:183
Alignment explanation
Indices: 16769074--16769637 Score: 573
Period size: 184 Copynumber: 3.0 Consensus size: 183
16769064 TCCGACTGGG
* * *
16769074 GCTTAGACATGGAATGAACTCCCTATGCGTAAGCTAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCGTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16769139 -CTAGCCGGAGAGGCAGAATGCGCAAGTCA-GGGATCGACCCGATCCCCCCTGCGTTCTGTCGAT
65 CCGA-CTGGAGAGGTAGAATGCGCAAGT-AGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
*
16769202 CCTGCTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
128 CCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
16769258 GCTTAGAC-TAGGTATGAACTCTATATGCCTAAGTCAACCCAAGATACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCGTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
*
16769322 GCCGACTGGAGAGGTAAAATGCGCAAGTAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
64 GCCGACTGGAGAGGTAGAATGCGCAAGTAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT-
* * *
16769387 CTGGTGCTGGTCCTGCTGCCGCCAA-CCTCGGTTCGGTCTAATCTTAGTCTGGGAATGAACTCCG
128 C-----CT-G--CTG-T--CG-CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
16769451 TAT
181 TAT
* * * * * *
16769454 GCTTAGACATGGAATGAACTCCGTATGTGTAAGCCTACCCACGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCGTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16769519 CCG-GTCGAAGAGGTAGAATGCGCAAGCT-GGGGATCGGCCTGGTCCCCCCTACGTGTTGTCGAT
65 CCGACT-GGAGAGGTAGAATGCGCAAG-TAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
* * * * * *
16769582 CCTACTATCGCAACCCTCGGTCTGATCCGATCTTAGGCTGGGAATGAACTCCGTAT
128 CCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
16769638 ACCTAAGTCA
Statistics
Matches: 314, Mismatches: 45, Indels: 42
0.78 0.11 0.10
Matches are distributed among these distances:
183 5 0.02
184 143 0.46
185 4 0.01
186 1 0.00
187 2 0.01
190 4 0.01
191 1 0.00
193 3 0.01
194 1 0.00
195 2 0.01
196 143 0.46
197 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCATATGCGTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACTGGAGAGGTAGAATGCGCAAGTAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16769541 original size:196 final size:196
Alignment explanation
Indices: 16769201--16769584 Score: 488
Period size: 196 Copynumber: 2.0 Consensus size: 196
16769191 GTTCTGTCGA
* * *
16769201 TCCTGCTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
16769266 TAGGTATGAACTCTATATGCCTAAGTCAACCCAAGATACGAGCGTGCGGGCGCTCAGCCGACTGG
66 TAGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGACTGA
*
16769331 AGAGGTAAAATGCGCAAG-TAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGGTGCT
131 AGAGGTAAAATGCGCAAGCT-GGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGGTGCT
16769395 GG
195 GG
* *
16769397 TCCTGCTGCCGCCAA-CCTCGGTTCGGTCTAATCTTAGTCTGGGAATGAACTCCGTATGCTTAGA
1 TCCTGCTGCCG-CAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* ** * * * * * *
16769461 C-ATGGAATGAACTCCGTATGTGTAAGCCTACCCACGAAATGAGTGTGCGGGTGCTCAGCCG-GT
65 CTA-GGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGACT
* * * *
16769524 CGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGTTGTCGATCCT
129 -GAAGAGGTAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
16769585 ACTATCGCAA
Statistics
Matches: 160, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
195 2 0.01
196 154 0.96
197 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
TCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TAGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGACTGA
AGAGGTAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGGTGCTG
G
Found at i:16770338 original size:26 final size:26
Alignment explanation
Indices: 16770297--16770349 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16770287 CTGGTTCGAT
16770297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16770323 CTTAGACTGGCG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
16770349 C
1 C
16770350 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16770346 original size:367 final size:368
Alignment explanation
Indices: 16769739--16770434 Score: 974
Period size: 367 Copynumber: 1.9 Consensus size: 368
16769729 TGTGCTGCCA
*
16769739 GTCCCGCTGCCACAACCCTTAGTTTCGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTTAGGTTCGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
** * * * * ** *
16769804 CCAACCCATGAAACGGGCGTACGATCGCTCAGCCGGCCGGAGTGGCAGAATGCGTAAGCTAGGGA
66 CCAACCCATGAAACCAGCGTACGAGCGCTCAGCCGGCCGAAGAGGCAGAATACACAAGCGAGGGA
* *
16769869 TCGGTCTGGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCCTCGATCCGATCTAATCTTA
131 TCGGTCTGATCCCCCCTACATGCTGTCGATCCTACTGCTGCAACCCTCGATCCGATCTAATCTTA
** * * *
16769934 GACTAGGAATGAACTTTGTATGCTTAGACTGGGGATGACCTCCGTATGCCTAAGTCAACCCATGA
196 GACTAGGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCATAA
* * *
16769999 AACCAGCGTGCGGGTGCTCAGTCGG-TCGGAGAGGCCGGTCAGAGAGACATAATGCACAAG-TCG
261 AACCAGCGTGCGGGTGCTCAGCCGGCT-GAAGAGGCCGGTCAGAGAGACAGAATGCACAAGCT-G
16770062 GGGATCAGCCCGATCCACCTCTGCATGCTGCCGATCCCGCTGTCG
324 GGGATCAGCCCGATCCACCTCTGCATGCTGCCGATCCCGCTGTCG
* * *
16770107 GTCCTGCTGCCACAACCC-TCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GTCCCGCTGCCACAACCCTTAGGTTCGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
*
16770171 GCCAACCCATGAAGCCAGCGT-CGAGCGCTCAGCCGGCCGAAGAGGCAGAATACACAAGTCGA-G
65 GCCAACCCATGAAACCAGCGTACGAGCGCTCAGCCGGCCGAAGAGGCAGAATACACAAG-CGAGG
* * * * *
16770234 GATCGGTTTGATCCCCCCTACATGCTGTCGATCCTGCTG-TCGCAACCCTCGATCTGGT-TCGAT
129 GATCGGTCTGATCCCCCCTACATGCTGTCGATCCTACTGCT-GCAACCCTCGATCCGATCT-AAT
*
16770297 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCC
192 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCC
* * * **
16770362 ATAAAACGAGTGTGCGGGTGCTCAGCCGGCTGAAGAGGTCGGTCAGAGAGGTAGAATGCACAAGC
257 ATAAAACCAGCGTGCGGGTGCTCAGCCGGCTGAAGAGGCCGGTCAGAGAGACAGAATGCACAAGC
16770427 TGGGGATC
322 TGGGGATC
16770435 GACTCGATTC
Statistics
Matches: 287, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
366 2 0.01
367 211 0.74
368 74 0.26
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (368 bp):
GTCCCGCTGCCACAACCCTTAGGTTCGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCATGAAACCAGCGTACGAGCGCTCAGCCGGCCGAAGAGGCAGAATACACAAGCGAGGGA
TCGGTCTGATCCCCCCTACATGCTGTCGATCCTACTGCTGCAACCCTCGATCCGATCTAATCTTA
GACTAGGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCATAA
AACCAGCGTGCGGGTGCTCAGCCGGCTGAAGAGGCCGGTCAGAGAGACAGAATGCACAAGCTGGG
GATCAGCCCGATCCACCTCTGCATGCTGCCGATCCCGCTGTCG
Found at i:16771068 original size:26 final size:26
Alignment explanation
Indices: 16771030--16771082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16771020 TCGGTCTGAT
16771030 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
16771056 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
16771082 C
1 C
16771083 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:16771480 original size:13 final size:13
Alignment explanation
Indices: 16771462--16771487 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16771452 CGGGTGCCCA
16771462 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
16771475 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
16771488 ACATAATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:16772463 original size:26 final size:26
Alignment explanation
Indices: 16772425--16772477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16772415 ACGGTCTAAT
16772425 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16772451 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16772477 C
1 C
16772478 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16772965 original size:26 final size:26
Alignment explanation
Indices: 16772929--16772981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16772919 TCGGTCCGAT
16772929 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16772955 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16772981 C
1 C
16772982 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16773886 original size:26 final size:25
Alignment explanation
Indices: 16773847--16773898 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16773837 CTGGTCCAAT
16773847 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
16773872 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
16773898 C
1 C
16773899 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:16774045 original size:537 final size:538
Alignment explanation
Indices: 16773037--16774078 Score: 1281
Period size: 537 Copynumber: 1.9 Consensus size: 538
16773027 AAAAGTCAGC
* * * *
16773037 CGAAGAGGGATAATACACAAGTCGGGGATCAGCCCGGTCCCCTCTACATGCTGCCGATCCGGTTA
1 CGAAGAGGCATAATACACAAGCCGAGGATCAGCCCGGTCCCCTCTACATGCTGCCGATCCCGTTA
* * * *
16773102 CCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
66 CCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCT
* * * * * * * * *
16773167 AAGCCAACCCAGGAAATGAGCGTGTGGGTGTTGAGCCAGCAGGAGAGGCAGAATGCGTAAGCTGG
131 AAGCCAACCCAGGAAATGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAGAATGCGCAAGCCGG
* * *
16773232 GGAACGGCCCGGTCCCCCCCTACGTGCTACCGATCCTACTGTTGGACCTGCAGCCACAACCCTCG
196 GGAACGGCCCGATCCCCCCCTACGAGCTACCGATCCTACTGTTGGACCTACAGCCACAACCCTCG
* * *
16773297 GTTCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAGACATGGAATGAACTCCATATGC
261 GTTCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGC
* * * **
16773362 CTGAGCCAACCCACGAAATGAGCGTGTCGGCACTCAACCGGCCAGAGAGGCAGAATGCGTAAATT
326 CTAAGCCAACCCACGAAATGAGCGTGTCGGCACTCAACCAGCCAGAGAGCCAGAATGCGTAAACC
* * * * * *
16773427 GGGGGCTGACCAGATCCCCCTTGCGTGCTGTCGATCCTGCTACCATAACCCTCAGTCCGGTCCGA
391 AGGGACCGACCAGATCCCCCTTGCGTGCTATCGATCCTGATACCACAACCCTCAGTCCGGTCCGA
*
16773492 TCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGG
456 TCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGG
16773557 TAGGCTGGAGAGGCCTAT
521 TAGGCTGGAGAGGCCTAT
* * * * *
16773575 CGAATAGGCATAATGCACAAGCCGAGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGTT
1 CGAAGAGGCATAATACACAAGCCGAGGATCAGCCCGGT-CCCCTCTACATGCTGCCGATCCCGTT
* ** **
16773640 GCC-ACTCCTGCTATGACAACCCTCGGTTTGACTGGGGCTTACACATGGAATGAACTCCGTATGC
65 ACCGA-TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGC
* * * *
16773704 CTAAGCCAACCCATGAAATGAGCGTGCGGGGGCTCAACCGGCCGAAAAGGCAGAATTCGCAAGCC
129 CTAAGCCAACCCAGGAAATGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAGAATGCGCAAGCC
** * * ** ** * *
16773769 GGGGATTGGCTCGAT-CCCCCCTGCGAGCTGTCGATCCTGGTGTTGGTCCTACTATCGCA-AA-C
194 GGGGAACGGCCCGATCCCCCCCTACGAGCTACCGATCCTACTGTTGGACCTAC-AGC-CACAACC
* * **
16773831 CTCGG-TCTGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG
257 CTCGGTTC-AGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCA
* * * *
16773894 TATGCCTAAGCCAACCCACGAAATGAGCGTG-CGGGCGCTCAGCCAGTCGGAGAGCCAGAATGCG
321 TATGCCTAAGCCAACCCACGAAATGAGCGTGTC-GGCACTCAACCAGCCAGAGAGCCAGAATGCG
* * * * * ** *
16773958 TAAGCCAGGGACCGACCCGATCCCCCTTGTGTGCTATCGAT-CTAGATGCCGCAACCCTTGGTCT
385 TAAACCAGGGACCGACCAGATCCCCCTTGCGTGCTATCGATCCT-GATACCACAACCCTCAGTCC
*
16774022 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACTAAATGAG
449 GGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAG
16774079 CGCGCGAGCA
Statistics
Matches: 421, Mismatches: 76, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
536 3 0.01
537 192 0.46
538 81 0.19
539 143 0.34
540 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (538 bp):
CGAAGAGGCATAATACACAAGCCGAGGATCAGCCCGGTCCCCTCTACATGCTGCCGATCCCGTTA
CCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCT
AAGCCAACCCAGGAAATGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAGAATGCGCAAGCCGG
GGAACGGCCCGATCCCCCCCTACGAGCTACCGATCCTACTGTTGGACCTACAGCCACAACCCTCG
GTTCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGC
CTAAGCCAACCCACGAAATGAGCGTGTCGGCACTCAACCAGCCAGAGAGCCAGAATGCGTAAACC
AGGGACCGACCAGATCCCCCTTGCGTGCTATCGATCCTGATACCACAACCCTCAGTCCGGTCCGA
TCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCACTCGG
TAGGCTGGAGAGGCCTAT
Found at i:16774778 original size:26 final size:26
Alignment explanation
Indices: 16774740--16774792 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16774730 GGCTCAAACT
16774740 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16774766 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16774792 C
1 C
16774793 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16775652 original size:26 final size:26
Alignment explanation
Indices: 16775623--16775675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16775613 CCAGTCTGAT
*
16775623 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16775649 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16775675 C
1 C
16775676 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16776159 original size:26 final size:26
Alignment explanation
Indices: 16776123--16776201 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16776113 CTGGTCTGAT
* *
16776123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
*
16776149 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCATATG
16776175 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
16776201 C
1 C
16776202 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:16776540 original size:26 final size:26
Alignment explanation
Indices: 16776502--16776552 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16776492 CCGGTCCGAT
*
16776502 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16776528 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16776553 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16776832 original size:158 final size:157
Alignment explanation
Indices: 16776537--16776898 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 157
16776527 GCTTAGACAT
* * * * * *
16776537 GGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTTGCCCGTCGGAG
1 GGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGTGCGAGCGC-TTGACCGGCAGAG
* * * *
16776602 AGGCAGAATGCACAAGCCGAGGACTGGTCCAATCCCTCCTGCGTGCTGTCGATCCTGCTACCGCA
65 AGGCAGAATACACAAGCCGAGGACTGGCCCAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
16776667 ACCCTCGATCCGATCCAATCTTAAACTG
130 ACCCTCGATCCGATCCAATCTTAAACTG
* * * *
16776695 GGAATGAACTTCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGAGCGC-TGAACCGGCAGAG
1 GGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTTG-ACCGGCAGAG
* * * * *
16776759 AGGCATAATACACAAGCTGGGGA-TCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCT-CTACC
65 AGGCAGAATACACAAGCCGAGGACT-GGCCCAATCCCCC-CTGCGTGCTGTCGAT-CCTGCTACC
* * *** *
16776822 ACAACTCTCGATCCAGCTGGGA-CTTAGACAT-
127 ACAACCCTCGATCC-GATCCAATCTTAAAC-TG
* * *
16776853 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCG
1 GGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAG-CGTGCG
16776899 GGTGCTTAGT
Statistics
Matches: 167, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 37 0.22
158 120 0.72
159 7 0.04
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTTGACCGGCAGAGA
GGCAGAATACACAAGCCGAGGACTGGCCCAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAA
CCCTCGATCCGATCCAATCTTAAACTG
Found at i:16777043 original size:26 final size:26
Alignment explanation
Indices: 16777002--16777054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16776992 CCAGTCCATT
*
16777002 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
16777028 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
16777054 C
1 C
16777055 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:16777974 original size:26 final size:26
Alignment explanation
Indices: 16777945--16777997 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16777935 CCGGTTCGAT
16777945 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
16777971 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
16777997 C
1 C
16777998 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:16778722 original size:26 final size:25
Alignment explanation
Indices: 16778680--16778731 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16778670 CCGATTCGAT
16778680 CTTAGACTGAAATGAACTCTGTATG
1 CTTAGACTGAAATGAACTCTGTATG
*
16778705 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGAAATGAACTCTGTATG
16778731 C
1 C
16778732 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (25 bp):
CTTAGACTGAAATGAACTCTGTATG
Found at i:16780159 original size:26 final size:26
Alignment explanation
Indices: 16780121--16780173 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16780111 TCGGTCTGAT
16780121 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
16780147 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
16780173 C
1 C
16780174 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:16780572 original size:13 final size:13
Alignment explanation
Indices: 16780554--16780578 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16780544 GGGTGCTCAA
16780554 CCGGTCGGAGAGG
1 CCGGTCGGAGAGG
16780567 CCGGTCGGAGAG
1 CCGGTCGGAGAG
16780579 ACATAATGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.52, T:0.08
Consensus pattern (13 bp):
CCGGTCGGAGAGG
Found at i:16781189 original size:26 final size:26
Alignment explanation
Indices: 16781153--16781205 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16781143 CCGGTCTGAT
16781153 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16781179 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16781205 C
1 C
16781206 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16781558 original size:26 final size:26
Alignment explanation
Indices: 16781520--16781572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16781510 ACGGTCTAAT
*
16781520 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
16781546 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTTCATATG
16781572 C
1 C
16781573 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:16782060 original size:26 final size:26
Alignment explanation
Indices: 16782024--16782076 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16782014 TCGGTCCGAT
16782024 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16782050 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16782076 C
1 C
16782077 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16782957 original size:537 final size:536
Alignment explanation
Indices: 16782132--16783163 Score: 1239
Period size: 537 Copynumber: 1.9 Consensus size: 536
16782122 AAAAGTCAGC
* * *
16782132 CGAAGAGGCATAATACACAAGTCGGGGATCAGTCCGGTCCCCTCTACATGCTGCCGATCCGGTTA
1 CGAAGAGGCATAATACACAAGCCGAGGATCAGTCCGGTCCCCTCTACATGCTGCCGATCCCGTTA
* * *
16782197 CCAATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCT
66 CCAATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCT
* * * * * * * * * * * * *
16782262 AAGCCAACCCAGGAAATGAGCGTGTGGGTGTTGAGCCAGCAGGAGAGGCAAAATGCGTAAGCTGG
131 AAACCAACCCAGGAAACGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAAAATACGCAAGCCGA
* *
16782327 GGAACGGCCCGGTCCCCCTACGTGCTACCGATCCTGCTGTTGGACCTACAGCCACAACCCTCGGT
196 GGAACGGCCCGATCCCCCTACGAGCTACCGATCCTGCTGTTGGACCTACAGCCACAACCCTCGGT
* * *
16782392 TCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAGACGTGGAATGAACTCCATATGCCT
261 TCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGCCT
* ** * * * * *
16782457 CAGCCAATGCATGAAATGAGCGTGCCGGCACTCAACCGGCCAGAGAGGCAGAATGCGTAAATCGG
326 AAGCCAACCCATGAAATGAGCGTGCCGGCACTCAACCAGCCAGAGAGCCAAAATGCGTAAACCAG
* * * * *
16782522 GGGCTGACCCGATCCCCCCTGCGTGCTGTCGATCCT-GCTACCATAACCCTCAGTCCGGTCCGAT
391 GGACCGACCCGATCCCCCCTGCGTGCTATCGAT-CTAGATACCACAACCCTCAGTCCGGTCCGAT
*
16782586 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCGCTCGGT
455 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCGCTCGGT
16782651 AGGCCGGAGAGGCCTAT
520 AGGCCGGAGAGGCCTAT
* * * * *
16782668 CGAATAGGCATAATGCACAAGCCGAGGATCAG-CCTGGTCCCCCTCTGCGTGCTGTCGATCCCGT
1 CGAAGAGGCATAATACACAAGCCGAGGATCAGTCC-GGT-CCCCTCTACATGCTGCCGATCCCGT
* * * ** *
16782732 TGCCACTCCTGCTGCGACAACCCTCGGTTTGACTGGTGCTTACACATGGAATGAACTCCGTATGC
64 TACCAATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGC
* * * *
16782797 CTAAACCAACCCATGAAACGAGCGTGCGGGGGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCC
129 CTAAACCAACCCAGGAAACGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAAAATACGCAAGCC
** * * ** * * * *
16782862 GAGGATTGGCTCGATCCCCCCTGCGAGCTGTCGATCCTGGTGTTGGTCCTGCTATCGCA-AA-CC
194 GAGGAACGGCCCGAT-CCCCCTACGAGCTACCGATCCTGCTGTTGGACCTAC-AGC-CACAACCC
* * *
16782925 TCGG-TCTGGTTCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
256 TCGGTTC-AGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCAT
* * * *
16782988 ATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGTCAGAGAGCCAAAATGCGTA
320 ATGCCTAAGCCAACCCATGAAATGAGCGTGCCGGCACTCAACCAGCCAGAGAGCCAAAATGCGTA
* * * * * * ** *
16783053 AGCCAGGGACCGACCCGGTCCCCCTTGTGTGCTATCGATTTAGATGCCACAACCCTTGGTCTGGT
385 AACCAGGGACCGACCCGATCCCCCCTGCGTGCTATCGATCTAGATACCACAACCCTCAGTCCGGT
*
16783118 CTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCAC
450 CCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCAC
16783164 TAAACGAGCG
Statistics
Matches: 409, Mismatches: 80, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
535 2 0.00
536 32 0.08
537 320 0.78
538 49 0.12
539 4 0.01
540 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (536 bp):
CGAAGAGGCATAATACACAAGCCGAGGATCAGTCCGGTCCCCTCTACATGCTGCCGATCCCGTTA
CCAATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCGTATGCCT
AAACCAACCCAGGAAACGAGCGTGCGGGGGCTCAACCAGCAGAAAAGGCAAAATACGCAAGCCGA
GGAACGGCCCGATCCCCCTACGAGCTACCGATCCTGCTGTTGGACCTACAGCCACAACCCTCGGT
TCAGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAATGAACTCCATATGCCT
AAGCCAACCCATGAAATGAGCGTGCCGGCACTCAACCAGCCAGAGAGCCAAAATGCGTAAACCAG
GGACCGACCCGATCCCCCCTGCGTGCTATCGATCTAGATACCACAACCCTCAGTCCGGTCCGATC
TTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGAGTGTGGGCGCTCGGTA
GGCCGGAGAGGCCTAT
Found at i:16782979 original size:26 final size:25
Alignment explanation
Indices: 16782940--16782991 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
16782930 CTGGTTCAAT
16782940 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
16782965 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
16782991 C
1 C
16782992 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:16783458 original size:26 final size:26
Alignment explanation
Indices: 16783417--16783469 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783407 CTAATTCGAT
16783417 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
* * * *
16783443 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
16783469 C
1 C
16783470 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:16783828 original size:24 final size:25
Alignment explanation
Indices: 16783781--16783828 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
16783771 CCGTCTATCA
*
16783781 TAGACTGGGAATGAACTCATATGCT
1 TAGACTGGGAATGAACTCAGATGCT
*
16783806 TAGACTGGG-ATGAACTCCGATGC
1 TAGACTGGGAATGAACTCAGATGC
16783829 CTAAGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (25 bp):
TAGACTGGGAATGAACTCAGATGCT
Found at i:16785660 original size:26 final size:25
Alignment explanation
Indices: 16785616--16785667 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16785606 CTGGTCCGAT
16785616 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTTCGTATG
* *
16785641 CTTAGACTAGGGATGAACTTTGTATG
1 CTTAGACT-GGAATGAACTTCGTATG
16785667 C
1 C
16785668 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:16787909 original size:26 final size:26
Alignment explanation
Indices: 16787872--16787922 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16787862 GCTCAAAATC
16787872 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
16787898 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
16787923 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Done.