Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 114 of 138
Found at i:16788250 original size:26 final size:26
Alignment explanation
Indices: 16788214--16788266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16788204 CCGGTCTGAT
16788214 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* * *
16788240 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16788266 C
1 C
16788267 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16788624 original size:26 final size:26
Alignment explanation
Indices: 16788595--16788647 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16788585 CCGGTCTGAT
16788595 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16788621 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16788647 C
1 C
16788648 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16795063 original size:26 final size:26
Alignment explanation
Indices: 16795013--16795064 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16795003 CCAGTTCGAT
**
16795013 CTTAGACTGGGAAGGAACTTTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
16795039 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
16795065 TCTAATTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:16795327 original size:159 final size:159
Alignment explanation
Indices: 16795038--16795329 Score: 397
Period size: 159 Copynumber: 1.8 Consensus size: 159
16795028 AACTTTGTAT
* * ** * * * * *
16795038 GCTTAGACTGGGGATGAACTCCGTATGTCTAATTCAACCCATGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAA
* * *
16795103 CCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCTCTCTACGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCCTACGTGCTGTCGATC
16795168 CTGCTGCCACAACCCTCGGTACGGCTGGG
131 CTGCTGCCACAACCCTCGGTACGGCTGGG
**
16795197 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCA
* * * * *
16795261 ACCGGCCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGAT
65 ACCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCCTACGTGCTGTCGAT
16795326 CCTG
130 CCTG
16795330 TTGCTGGTCC
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
159 112 0.99
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAA
CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCCTACGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTACGGCTGGG
Found at i:16795715 original size:158 final size:158
Alignment explanation
Indices: 16795553--16796126 Score: 552
Period size: 158 Copynumber: 3.6 Consensus size: 158
16795543 TTGGTCCGAT
** *
16795553 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGC-CTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAG
* * * * * *
16795616 CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGATCTGGTCCCCCTCTACGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTACGTGCTGTCGGTC
*
16795681 CCGCTGTCACAACCCTCGATCCGGCTAGGG
130 CCGCTG-CACAACCCTCGGTCCGGCTAGGG
* * * * *
16795711 CTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAGC
* * * *** * * ** *
16795776 CGGCCGGAGAGGTAGAATGTGCAAGTTGGGGATTGGCCCGATCCCCC-CTGTGTGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTACGTGCTGTCGGTCC
* * * * **
16795840 TGCTGCTGCAACCCTCGGTCTGG-TCCGAT
131 CGCTGC-ACAACCCTCGGTCCGGCT-AGGG
* * * *
16795869 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAG
* * * * * *
16795933 CC-AGTCGAAAAGGCATAATGCGTAAGCCAGGGATCGGTCCGATCCCCCTCTACATGCTGTCGGT
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTACGTGCTGTCGGT
* *
16795997 CCCGCTGCCACAACCCTCGGTCCGACTGGGG
129 CCCGCTG-CACAACCCTCGGTCCGGCTAGGG
* * * * *
16796028 CTTAAACATGGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAAC-AGATGTACGGGCGCTTA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGTC-AACCCACGAAACGAG-CGTACAGGCGCTGA
* *
16796091 GCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
16796127 AGCTCGGTCT
Statistics
Matches: 330, Mismatches: 73, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 173 0.52
159 151 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAGC
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTACGTGCTGTCGGTCC
CGCTGCACAACCCTCGGTCCGGCTAGGG
Found at i:16796046 original size:317 final size:316
Alignment explanation
Indices: 16795533--16796117 Score: 839
Period size: 317 Copynumber: 1.8 Consensus size: 316
16795523 CTGCTACCGT
* * *
16795533 AACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
* * * * * * *
16795598 TGAGCGTACAGGCCTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGATCTGGTCCCC
66 CGAGCGTACAGGCCTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGATCCGATCCCC
* * * *
16795663 CTCTACGTGCTGTCGGTCCCGCTGTCACAACCCTCGATCCGGCTAGGGCTTAGACATGCAATGAA
131 CTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAAACATGCAATGAA
* * * * *
16795728 CTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGGCCGGAGAGGTAGAA
196 CTCCCTATGCCTAAGCCAACCCACGAAACAGACGTACAGGCGCTCAGCCGGCCAGAGAGGCAGAA
*
16795793 TGTGCAAGTTGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCTGC
261 TGCGCAAGTTGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCTGC
* *
16795849 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAA
1 AACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
* * * *
16795914 CGAGCGTGCAGGCGCTGAGCC-AGTCGAAAAGGCATAATGCGTAAGCCAGGGATCGGTCCGATCC
66 CGAGCGTACAGGC-CTGAGCCGA-CCGAAAAGGCATAATGCGCAAGCCAGGGATCGATCCGATCC
* * *
16795978 CCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATG
129 CCCTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAAACATGCAATG
* * * * *
16796043 AACTCCCTATGCCTAAGCTAACCCATGAAACAGATGTACGGGCGCTTAGCCGGCCAGAGAGGCAG
194 AACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTACAGGCGCTCAGCCGGCCAGAGAGGCAG
16796108 AATGCGCAAG
259 AATGCGCAAG
16796118 CCAGGGATCA
Statistics
Matches: 233, Mismatches: 34, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
316 72 0.31
317 161 0.69
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
AACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
CGAGCGTACAGGCCTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGATCCGATCCCC
CTCTACATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAAACATGCAATGAA
CTCCCTATGCCTAAGCCAACCCACGAAACAGACGTACAGGCGCTCAGCCGGCCAGAGAGGCAGAA
TGCGCAAGTTGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCTGC
Found at i:16797166 original size:315 final size:313
Alignment explanation
Indices: 16796587--16797554 Score: 848
Period size: 315 Copynumber: 3.1 Consensus size: 313
16796577 GCTTCAACAT
* * * ** * * * * * *
16796587 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGTAAGCGTGCGGGTGCTCAGCTGACCGGAG
1 GGAATGAACTCCGTATGCATAAGTCAACCAACGAAACAAGCGTACGGGCGCTGAGCCGATCGAAG
* * ** * * * ** * *
16796652 AGGCAGAATGCGCAAGCCGGGGATCAGCCCTG-TCCCCC-CTATGTGCTGTCGATCCTACTACCG
66 AGG-ATAATGCACAAGCCGGGGATCAGCCC-GATCCCCCTCTCCGTACTATCGGTCCCGCTGCCA
* * * ** * * * * *
16796715 CAACCCTCAGTCCGGTTCA-ATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACG
129 AAACCCTCAGTCCAGCT-AGGGCTTAGACAT-GCAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * * * * **
16796778 AAACAAGCGTGTGAGCGCTGAGCCGATCAGAGTGTAGAATGCGCAAGCCGGGGATCAGCCCAGTC
192 AAACAGGCGTGAG-GCGCTCAGCCG-TCGGAGAGCAGAATGCGCAAGTCGGGGATCAGCCTGGTC
* * * *
16796843 CCCCCTGCGTGCTATCGATCCTGCTACCGTAACCCTTGGT-CTAGTCTGATCTTAGACTA
255 CCCCCTGCGTGCTATCGATCCTGCTACAGTAACCCTCGGTCCGA-TCTGATCTTAGACTG
* ** * * * *
16796902 GGAATGAACTCCGTATGCCTAAGTCAACGC-TTGAAACAATCGTACGGGCGCTGAGTCGATGGGA
1 GGAATGAACTCCGTATGCATAAGTCAAC-CAACGAAACAAGCGTACGGGCGCTGAGCCGATCGAA
* * * * ** *
16796966 GCAGTG-TAATGCACAAGTCGGGGATC-GACCTGGTCCCCCTCTGCGTGTTGTCGGTCCCG-TGG
65 G-AG-GATAATGCACAAGCCGGGGATCAG-CCCGATCCCCCTCTCCGTACTATCGGTCCCGCT-G
*
16797028 CCAAAACCCTCAGTCC-GACTAGGGCTTAGACATGCAATGAACTCCTTATGCCTAAGCCAACCCA
126 CCAAAACCCTCAGTCCAG-CTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCA
*
16797092 TGAAACAGGCGTGCAGGCGCTCAGCCAGTCGGAGAGCAGAATGC-CAAGTCGGGGATC-GATCTG
190 TGAAACAGGCGTG-AGGCGCTCAGCC-GTCGGAGAGCAGAATGCGCAAGTCGGGGATCAG-CCTG
* * * * *
16797155 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCAGTCCGATCCGATCTTAGACTG
252 GTCCCCCCTGCGTGCTATCGATCCTGCTACAGTAACCCTCGGTCCGATCTGATCTTAGACTG
* * ** *
16797217 GGAATAAACTTCGTATGCATAAGTCAACCAACGAAATGAGCGTACGGGTGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCATAAGTCAACCAACGAAACAAGCGTACGGGCGCTGAGCCGATCGAAG
* ** * *
16797282 AGGCATAATTCGTAAGCCGGGGATCAGCCCGATCCCCCTTTCCGTACTATCGGTCCCGCTGCCAC
66 AGG-ATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTCCGTACTATCGGTCCCGCTGCCAA
* * *
16797347 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
130 AACCCTCAGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * *
16797412 CGGGCGTGTGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGTTGAGGATCAGCCTGGTCCC
195 CAGGCGTG-AGGCGCTCAGCCGTC-GGAGA-GCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCC
* * *
16797477 CCCTGCGTACTA-CTGATCCTGCTGTCAG-AAACCTCGGTCCGATCTGATCTTAGACTG
257 CCCTGCGTGCTATC-GATCCTGCT-ACAGTAACCCTCGGTCCGATCTGATCTTAGACTG
16797534 GGAATGAACTCCGTATGCATA
1 GGAATGAACTCCGTATGCATA
16797555 GACTGGGGAT
Statistics
Matches: 530, Mismatches: 97, Indels: 50
0.78 0.14 0.07
Matches are distributed among these distances:
313 1 0.00
314 8 0.02
315 318 0.60
316 113 0.21
317 87 0.16
318 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (313 bp):
GGAATGAACTCCGTATGCATAAGTCAACCAACGAAACAAGCGTACGGGCGCTGAGCCGATCGAAG
AGGATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTCCGTACTATCGGTCCCGCTGCCAAA
ACCCTCAGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
AGGCGTGAGGCGCTCAGCCGTCGGAGAGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCT
GCGTGCTATCGATCCTGCTACAGTAACCCTCGGTCCGATCTGATCTTAGACTG
Found at i:16797469 original size:159 final size:157
Alignment explanation
Indices: 16796583--16797488 Score: 516
Period size: 159 Copynumber: 5.7 Consensus size: 157
16796573 GTATGCTTCA
* * **** * *
16796583 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGTAAGCGTGCGGGTGCTCAGCTGACC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATC
* ** * * * ** *
16796648 GGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCT-GTCCCCCCTATGTGCTGTCGATCCTACTA
66 GGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCTGGTCCCCCCTCCGTACTATCGGTCCCGCTG
** * **
16796712 CCGCAACCCTCAGTCCGGTTCA-ATCTTAG
130 CCAAAACCCTCAGTCC-GCT-AGGGCTTAG
* * * * ** * * * *
16796741 AC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGTGAGCGCTGAGCCGAT
1 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGAT
* * ** * * * *
16796805 C--AGAGTGTAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCT
65 CGGAGAG-GCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTCCGTACTATCGGTCCCGCT
* ** ** * **
16796868 ACCGTAACCCTTGGTCTAGTCT-GATCTTAG
129 GCCAAAACCCTCAGTC-CG-CTAGGGCTTAG
* * * * *** * * * *
16796898 AC-TAGGAATGAACTCCGTATGCCTAAGTCAACGCTTGAAACAATCGTACGGGCGCTGAGTCGAT
1 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGAT
* * ** *
16796962 -GG-GA-GCAGTGTAATGCACAAGTCGGGGATC-GACCTGGTCCCCCTCTGCGTGTTGTCGGTCC
65 CGGAGAGGCA--G-AATGCGCAAGTCGGGGATCAG-CCTGGTCCCCC-CTCCGTACTATCGGTCC
16797023 CG-TGGCCAAAACCCTCAGTCCGACTAGGGCTTAG
125 CGCT-GCCAAAACCCTCAGTCCG-CTAGGGCTTAG
* * * * *
16797057 ACATGCAATGAACTCCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCGCTCAGCC-AGT
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGA-T
* * * * * *
16797121 CGGAGA-GCAGAATGC-CAAGTCGGGGATC-GATCTGGTCCCCCCTGCGTGCTGTCGATCCTGCT
65 CGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCTGGTCCCCCCTCCGTACTATCGGTCCCGCT
*** * * **
16797183 GCTGTAACCCTCAGTCCGATCCGATCTTAG
129 GCCAAAACCCTCAGTCCGCT-AGGGCTTAG
* * * * * * * * * * *
16797213 AC-TGGGAATAAACTTCGTATGCATAAGTCAACCAACGAAATGAGCGTACGGGTGCTGAGCCGAT
1 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGAT
* * * * * * * *
16797277 CGAAGAGGCATAATTCGTAAGCCGGGGATCAGCCCGATCCCCCTTTCCGTACTATCGGTCCCGCT
65 CGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCC-CTCCGTACTATCGGTCCCGCT
* * *
16797342 GCCACAACCCTCGGTCCAGCTGGGGCTTAG
129 GCCAAAACCCTCAGTCC-GCTAGGGCTTAG
*
16797372 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGCCGA-C
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATC
* * *
16797436 TGGAGAGGCAGAATGCGCAAGTTGAGGATCAGCCTGGTCCCCCCTGCGTACTA
66 -GGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTCCGTACTA
16797489 CTGATCCTGC
Statistics
Matches: 587, Mismatches: 131, Indels: 60
0.75 0.17 0.08
Matches are distributed among these distances:
155 4 0.01
156 93 0.16
157 162 0.28
158 118 0.20
159 199 0.34
160 6 0.01
161 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATC
GGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCCTCCGTACTATCGGTCCCGCTGC
CAAAACCCTCAGTCCGCTAGGGCTTAG
Found at i:16797556 original size:26 final size:26
Alignment explanation
Indices: 16797527--16797577 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16797517 GATCTGATCT
16797527 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
16797553 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16797578 CTAAGTCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:16798122 original size:26 final size:26
Alignment explanation
Indices: 16798086--16798138 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16798076 CCGGTCCGAT
*
16798086 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
16798112 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16798138 C
1 C
16798139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16799053 original size:159 final size:156
Alignment explanation
Indices: 16798810--16799245 Score: 423
Period size: 159 Copynumber: 2.7 Consensus size: 156
16798800 CGTGCGGGTG
* * *
16798810 CTCAGCCGACCGGAGAGGCAGAATGCATAAGCTGGGGATCAGCCCGATCCCCCCCTATGTGCTGT
1 CTCAGCCGACCGGAGAGGCAGAATGCACAAGC-GGGGATCAGCCCGATCCCCCTCTACGTGCTGT
* * * * *
16798875 AGATCTTGCTTCCATAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATACCTA
65 CGATCCTGCTACCACAACCCTC-GTCC-GTCTGATCTTAGACTGGGAATGAACTCCATATACCTA
* * *
16798940 AGTCAACCCATAAAATGAGCATGC-GGGCG
128 AGCCAACCCACAAAATGAGCAT-CTGGGCA
* * * * *
16798969 TTGAGCCAACCGGAGAGGCATAATGCACAAGTCGGGGATTAGCCCGATCCCCCTCTACGTGCTGT
1 CTCAGCCGACCGGAGAGGCAGAATGCACAAG-CGGGGATCAGCCCGATCCCCCTCTACGTGCTGT
* * ** * * * *
16799034 CGCTCCCGCTACCACAACCCTCGGTCCAACTGGAGCTTAGACAT-GGATTGAACTCCCTATGCCT
65 CGATCCTGCTACCACAACCCTC-GTCCGTCT-GATCTTAGAC-TGGGAATGAACTCCATATACCT
* *
16799098 AAGCCAACCCACAAAATGGGCGTCTGGGCA
127 AAGCCAACCCACAAAATGAGCATCTGGGCA
* * *
16799128 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGG-TCAGCCCGGTCCCCCT-TGCGTGCTG
1 CTCAGCCGACCGGAGAGGCAGAATGCACAAG-CG-GGGATCAGCCCGATCCCCCTCTACGTGCTG
* ** *
16799191 -CTGATCCTACTGTCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT
64 TC-GATCCTGCTACCACAACCCTCG-TCC-GTCTGATCTTAGACTGGGAATGAACT
16799246 TTTTATGCTT
Statistics
Matches: 222, Mismatches: 46, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 48 0.22
159 166 0.75
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
CTCAGCCGACCGGAGAGGCAGAATGCACAAGCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTC
GATCCTGCTACCACAACCCTCGTCCGTCTGATCTTAGACTGGGAATGAACTCCATATACCTAAGC
CAACCCACAAAATGAGCATCTGGGCA
Found at i:16799278 original size:26 final size:26
Alignment explanation
Indices: 16799227--16799279 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16799217 CCAGTCCGAT
***
16799227 CTTAGACTGGGAATGAACTTTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16799253 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16799279 C
1 C
16799280 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16800081 original size:159 final size:159
Alignment explanation
Indices: 16799622--16800196 Score: 447
Period size: 159 Copynumber: 3.6 Consensus size: 159
16799612 TCTGTATGCA
* * * *
16799622 TAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCACGAAACAAGTGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCG
* ** ** * * * *
16799687 ACCAAAGAGGCAGAACACGCAAGCCGGGGATC-GACCCAATCCCCCCTTGCGTGCTGTCAATCCT
66 GCCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGA-CCAGTCCCCCCTCGCGTGCTGTCAATCTT
* * * *
16799751 ACTACCG-AAACCCTCGATCCGGTTCGATCT
129 GCTACCGCAAACCCTCGGTCTGGCTCGATCT
* * * * ** * * *
16799781 TAGA-TTGGGAATGAACTCCATGTGCCTAAGTCAACCCACGAAATGACCGTACGGGCGCTGAGCT
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCC
* * **
16799845 GGCCGGAGAGGCATAATGCGTAAGCCGAGGATC-GACCTAG-CCCCCCTCTACGTGCTG-CGGGT
65 GGCCGGAGAGGCAGAATGCGTAAGCCG-GGATCGGACC-AGTCCCCCCTC-GCGTGCTGTC-AAT
* * * *
16799907 CTCGCTGCCAC-AACCCTCGGTCTGGCTGGCA-CT
126 CTTGCTACCGCAAACCCTCGGTCTGGCTCG-ATCT
*
16799940 TAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCCA-C
1 TAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCT-CAGC
* * *
16800003 CGGTCGGAGAGGAAGAATGCGTAAGCCAGGGATCGGGCCAGTCCCCCC-CGCGTGCTGTCAATCT
64 CGGCCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGACCAGTCCCCCCTCGCGTGCTGTCAATCT
* *
16800067 TGCTACCGCAAACCCTCTGTCT-GATCCGATCT
128 TGCTACCGCAAACCCTCGGTCTGGCT-CGATCT
* * * * * * * * *
16800099 TAGA-TTGGGGATGAACTCCCTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGCCGCTTAGCC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCC
* * * * *
16800163 GACCAGAGAGGCAGGATGCGCAAGCTGGGGATCG
65 GGCCGGAGAGGCAGAATGCGTAAGC-CGGGATCG
16800197 AACGGGTGGT
Statistics
Matches: 323, Mismatches: 72, Indels: 42
0.74 0.16 0.10
Matches are distributed among these distances:
158 35 0.11
159 273 0.85
160 15 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGTAAGCCGGGATCGGACCAGTCCCCCCTCGCGTGCTGTCAATCTTGC
TACCGCAAACCCTCGGTCTGGCTCGATCT
Found at i:16800817 original size:26 final size:26
Alignment explanation
Indices: 16800779--16800831 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16800769 GGCTCAAAAT
*
16800779 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16800805 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16800831 C
1 C
16800832 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16801305 original size:26 final size:26
Alignment explanation
Indices: 16801269--16801321 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16801259 TCGGTTCGAT
* *
16801269 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16801295 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16801321 C
1 C
16801322 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16802276 original size:158 final size:157
Alignment explanation
Indices: 16801455--16802298 Score: 570
Period size: 158 Copynumber: 5.3 Consensus size: 157
16801445 AGTCCTGCTG
* ** *
16801455 CCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCTGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * ** * *
16801519 C-AAAAGAAGCGTGCAGGTGCTCAGCCGGCCGGAGAGGTAGAATGTGCAAGCTAGGGATCGACCT
65 CGAAACG-AGCGTGCTGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
* * **
16801583 GGTCCCCCATGCGTGCTGTTGATCCTGCTA
129 GATCCCCCCTGCGTGCTGCCGATCC-GCTA
* * * * * *
16801613 CCACAACCCTCAGTCTGGTTTGATCTTAGA-TTGGGAATGAACTCCGCATGCTTAAGTCAACCCA
1 CCACAACCCTCGGTCTGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
16801677 CGAAACGAGCAT-ATGG-GCTCTGAGCCAGTC-GAGAAGGCATAATGCGTAAGCCGGGGATCAGC
65 CGAAACGAGCGTGCTGGTGCTC--AGCCGGTCGGAG-AGGCAGAATGCGCAAGCCGGGGATCGGC
*
16801739 CCTG-TCCCCCTCTGCGTGCTGCC-AGTCTCGCTG
127 CC-GATCCCCC-CTGCGTGCTGCCGA-TC-CGCTA
** * * *
16801772 CCACAACCCTCGGTCAT-G-CTGGGGCTTACAGATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTCGGTC-TGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * * * *
16801835 ATGAAATGGGCGTGC-GAGCGCTCAGCCGGTCAGAGAGGTAGAATGCGTAAGTCGAGGATCGACT
64 ACGAAACGAGCGTGCTG-GTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * *
16801899 CGTTCCCCCACCCGCGTGCTGTCGATCCTGCTG
128 CGAT-CCCC-CCTGCGTGCTGCCGATCC-GCTA
* ** * * * *
16801932 TCGTAACCCTTGGTCTGATCCGATCTTAGAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCACAACCCTCGGTCTGGTCTGATCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * ** * *
16801996 TGAAATGAGCGT-ATGGGTGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA-CTTGCC
65 CGAAACGAGCGTGCT-GGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCC
* * *
16802059 CGATCCCTCTCTGCATGCTGCCGATCCCACTA
128 CGATCCC-CCCTGCGTGCTGCCGAT-CCGCTA
* * * * ** * *
16802091 GCACAA-CCTTGATCTAGT-TGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCTGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
16802154 CGAAACGGGCGTGCTGGTGCTTAGCTGGTCGGAAAGGCAGAATGCACAAGCCGGGGATCGGCTCG
65 CGAAACGAGCGTGCTGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
**
16802219 ATCCCCCCTAAGTGCTGCCGATCCGACTA
130 ATCCCCCCTGCGTGCTGCCGATCCG-CTA
* *
16802248 CCGCAACCCTCGGTCTGGTCTGATCTTAGAC-TAGGAATGAACTCCATATGC
1 CCACAACCCTCGGTCTGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGC
16802299 TTAGACTGGG
Statistics
Matches: 521, Mismatches: 127, Indels: 76
0.72 0.18 0.10
Matches are distributed among these distances:
156 6 0.01
157 27 0.05
158 221 0.42
159 138 0.26
160 121 0.23
161 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CCACAACCCTCGGTCTGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCTGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA
TCCCCCCTGCGTGCTGCCGATCCGCTA
Found at i:16803042 original size:26 final size:26
Alignment explanation
Indices: 16803004--16803056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16802994 GGCTTGAAAT
16803004 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16803030 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16803056 C
1 C
16803057 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16803816 original size:164 final size:164
Alignment explanation
Indices: 16803545--16803849 Score: 425
Period size: 164 Copynumber: 1.9 Consensus size: 164
16803535 GATGAACTTC
* * *
16803545 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCATAATGCA
1 GTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCA
* ** **
16803610 CAAGCCGAGGATCAGCTTGGTCCCCCTCTGCGTGCTACCGATCCCGCTGTCGGTCCTGCTGCCAC
66 CAAGCAGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCTGCTGCCAC
16803675 AACCCTCGGTCCGACTAGACATGGAATGACCTCT
131 AACCCTCGGTCCGACTAGACATGGAATGACCTCT
* * * *
16803709 GTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCGACCGGAGAGGCAGAATGCG
1 GTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCA
* * *
16803774 CAAGTCAG-GGATCGGCCCGGT-CCCCTCCTGCGTGCTACCGATCCTGCTACCGGTCTTGCTGCC
66 CAAG-CAGAGGATCAGCCCGGTCCCCCT-CTGCGTGCTACCGATCCCGCTACCGGTCCTGCTGCC
* *
16803837 ATAATCCTCGGTC
129 ACAACCCTCGGTC
16803850 TGGTCCGATC
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
163 5 0.04
164 115 0.94
165 2 0.02
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (164 bp):
GTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCA
CAAGCAGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCTGCTGCCAC
AACCCTCGGTCCGACTAGACATGGAATGACCTCT
Found at i:16803994 original size:361 final size:348
Alignment explanation
Indices: 16803342--16804006 Score: 873
Period size: 361 Copynumber: 1.9 Consensus size: 348
16803332 GGTTGGGGCT
* * **
16803342 TAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
*** * * **
16803407 GTTGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGC
66 ACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTGC
* * *
16803472 TATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
131 TATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAA
* * * * * *
16803537 TGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGC
196 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCAGAGAGAC
* * *
16803602 ATAATGCACAAGCCGAGGATCAGCTTGGTCCCCCTCTGCGTGCTACCGATCCCGCTGTCGGTCCT
261 AGAATGCACAAGCCGAGGATCAGCCTGGTCCCCCCCTGCGTGCTACCGATCCCGCTGTCGGTCCT
16803667 GCTGCCACAACCCTCGGTCCGAC
326 GCTGCCACAACCCTCGGTCCGAC
* * *
16803690 TAGACATGGAATGACCTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCG
1 TAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
* * * *
16803755 ACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCTCCTGCGTGCTACCGATCCTG
66 ACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCC-CCTACGTGCTACCGATCCTG
* *
16803820 CTACCGGTCTTGCTGCCATAATCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
130 CTA-------T-C-G---TAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
*
16803885 CTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAA
183 CTTAAAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAA
* * *
16803949 CCGACCAGAGAGATAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGTGTGCT
247 CCGACCAGAGAGACAGAATGCACAAGCCGAGGATCAGCCTGGTCCCCCCCTGCGTGCT
16804007 GTCAATCCTA
Statistics
Matches: 267, Mismatches: 36, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
348 94 0.35
349 20 0.07
356 1 0.00
357 1 0.00
358 1 0.00
361 149 0.56
362 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (348 bp):
TAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCG
ACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTGC
TATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCAGAGAGAC
AGAATGCACAAGCCGAGGATCAGCCTGGTCCCCCCCTGCGTGCTACCGATCCCGCTGTCGGTCCT
GCTGCCACAACCCTCGGTCCGAC
Found at i:16804186 original size:159 final size:159
Alignment explanation
Indices: 16803895--16805192 Score: 440
Period size: 159 Copynumber: 8.1 Consensus size: 159
16803885 CTTAAACATG
* *
16803895 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
* * * *
16803960 GATAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGTGTGCTGTCAATCCTACTACCGCA
66 GACAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCACA
*
16804025 ACCCTCGGTCTGATCTGATCTTAGAATGA
131 ACCCTCGATCTGATCTGATCTTAGAATGA
* * * * * * * * *
16804054 GAATGAACTCTGCATGCCTAAATCAACCCATGAAATGAGCGTGCGGGAGGTGAGCCGGCCGGAGA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
* * * * *
16804119 GGCATAATGCACAAGCCGAGGATCGG-CTCGGTCCCCCTCTGCGTGCTGCCGAT-CTCACTGCCA
66 GACAGAATGCACAAGCCGAGGATCGGCCT-GGTCCCCCCCTGCGTGCTGCCAATCCT-ACTACCA
* *
16804182 CAACCCTCGATCTG-GCT-ACGGCTTAGACATG-
129 CAACCCTCGATCTGATCTGA--TCTTAGA-ATGA
* ** * * * * * *
16804213 GAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCGGAGA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
* * * *** * * ***
16804278 GGCAGAATGCACAAG-CAAGGGATCTGCCCAATTCCCCTTTACGTGCTATCGATACTGCTGCTGG
66 GACAGAATGCACAAGCCGA-GGATC-GGCCTGGTCCCC----C--CCT-GCG----TGCTGCCAA
* * * * * * * *
16804342 TCTTGCTGCCACAACACTCGGTCCAGTTC-AATCTTAGACATG-
118 TCCTACTACCACAACCCTCGAT-CTGATCTGATCTTAGA-ATGA
* * * * * * * *
16804384 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCAGCCGACCAGAAA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
* * ** * * * *** * * *
16804449 GGCAAAATGCGTAAGCC-AGGGAAT-GACCTGAT-CCCTCCTGCGTGCTGTTGATCCTGCTATCG
66 GACAGAATGCACAAGCCGA-GG-ATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCA
* * * * * ** *
16804511 CAACCGTCGGTCCGGTCTAATCTTAGGCTGG
129 CAACCCTCGATCTGATCTGATCTTAGAATGA
* ** * * * * * * * * *
16804542 GAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCTTGCAGGCGCTGACCCGGCC-GAAA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAG-AG
* * * * *** * * * ** ** *
16804606 AGGCATAATGCACAAGCCGAGGTTTGGCCCAATCCCCCTCTGCGTACTGTCGGTCCCGCTAGCAC
65 AGACAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCAC
* *
16804671 AACCCTC-AGTCCGA-CTAGGGT-TTAGACATG-
130 AACCCTCGA-TCTGATCT--GATCTTAGA-ATGA
* * * * * *
16804701 GAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACG-GACATGCGGGCGCTCAATCGATCGGA
1 GAATGAACTCCGC-ATGCCTAAACCAACCCACGAAACGAG-CGTGCGGGAGCTCAACCGACCAGA
* * * * * * * * * * * *
16804764 GAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCCTTGTGTGCTACCGATCTTGCTACCG
64 GAGACAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCA
* * * * *
16804828 TAACCCTCAATC-CAGTCTGATCTTAGACTGG
129 CAACCCTCGATCTGA-TCTGATCTTAGAATGA
* ** * * * * * * * *
16804859 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCA-TTGAGCC-AGTCGGA
1 GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGG-AGCTCAACCGA-CCAGA
* * * * * * * ** ** *
16804922 GAGGCATAATGCGCAAGCC-AGGGATTGACCCGGTCCCCCTCTATGTGCTATCGATCCCT-CTAC
64 GAGACAGAATGCACAAGCCGA-GGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAAT-CCTACTAC
* * * * **
16804985 CATAACCCTCGGTCCG-GCTGGGGCTTAGACATG-
127 CACAACCCTCGATCTGATCT-GATCTTAGA-ATGA
* * *
16805018 GAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAG
1 GAATGAACTCCGC-ATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAG
* ** * ** * ** * * *
16805082 AGATAGAATGTGCAAGTCGAGGATCGGCCTGGT-CCCCTTTGCGTGCTACTGATCCTTCTATCGC
65 AGACAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCAC
* *
16805146 AACCCTC-AGTCTGGTCTGATCTTAGACTGA
130 AACCCTCGA-TCTGATCTGATCTTAGAATGA
*
16805176 GAATGAACTCCGTATGC
1 GAATGAACTCCGCATGC
16805193 TTAGACTGGG
Statistics
Matches: 862, Mismatches: 215, Indels: 125
0.72 0.18 0.10
Matches are distributed among these distances:
157 20 0.02
158 278 0.32
159 417 0.48
160 19 0.02
161 1 0.00
162 2 0.00
163 2 0.00
164 1 0.00
166 2 0.00
167 2 0.00
169 3 0.00
170 4 0.00
171 103 0.12
172 6 0.01
173 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
GAATGAACTCCGCATGCCTAAACCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGA
GACAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGCCAATCCTACTACCACA
ACCCTCGATCTGATCTGATCTTAGAATGA
Found at i:16804861 original size:317 final size:317
Alignment explanation
Indices: 16804374--16805192 Score: 928
Period size: 317 Copynumber: 2.6 Consensus size: 317
16804364 CCAGTTCAAT
* * * *
16804374 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGC
* * * * * * **
16804439 CGACCAGAAAGGCAAAATGCGTAAGCCAGGGAATGA-CCTGATCCCTCC-TGCGTGCTGTTGATC
66 CGACCAGAGAGGCAGAATGCGCAAGCC-GGGGATCAGCCTGGTCCC-CCTTGCGTGCTACTGATC
* * * * *
16804502 CTGCTATCGCAACCGTCGGTCCGGTCTAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCA
129 TTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
16804567 TCCCACGAAATGAGCTTGCAGGCGCTGACCCGGCCGAAAAGGCATAATGCACAAGCC-GAGGTTT
194 ACCCACGAAACGAACGTACAGGCACTGACCCAGCCGAAAAGGCATAATGCACAAGCCAG-GGATT
* * * * *
16804631 GGCCCAATCCCCCTCTGCGTACTGTCGGTCCCGCTAGCACAACCCTCAGTCCGACTAGGG
258 GACCCAATCCCCCTCTACGTACTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
* * **
16804691 TTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGC
* * * * *
16804756 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGTGTGCTACCGATCTT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTTGCGTGCTACTGATCTT
* * * *
16804821 GCTACCGTAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 GCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
16804886 CCATGAAACGAACGTACGGGCATTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATTGAC
196 CCACGAAACGAACGTACAGGCACTGACCCAGCCGAAAAGGCATAATGCACAAGCCAGGGATTGAC
** * * * * * * *
16804951 CCGGTCCCCCTCTATGTGCTATCGATCCCTCTACCATAACCCTCGGTCCGGCTGGGG
261 CCAATCCCCCTCTACGTACTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
*
16805008 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTCAG
** * * * * *
16805072 CCGACCAGAGAGATAGAATGTGCAAGTCGAGGATCGGCCTGGTCCCCTTTGCGTGCTACTGATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTTGCGTGCTACTGAT-C
* *
16805137 TT-CTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGC
129 TTGCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
16805193 TTAGACTGGG
Statistics
Matches: 414, Mismatches: 83, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
316 10 0.02
317 400 0.97
318 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTTGCGTGCTACTGATCTT
GCTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAACGTACAGGCACTGACCCAGCCGAAAAGGCATAATGCACAAGCCAGGGATTGAC
CCAATCCCCCTCTACGTACTATCGATCCCGCTACCACAACCCTCAGTCCGACTAGGG
Found at i:16804959 original size:158 final size:156
Alignment explanation
Indices: 16804372--16805192 Score: 569
Period size: 158 Copynumber: 5.2 Consensus size: 156
16804362 GTCCAGTTCA
* * *
16804372 ATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCA
1 ATCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * * * * * * * * ***
16804437 GCCGACCAGAAAGGCAAAATGCGTAAGCCAGGGAATGACCTGATCCCTCC-TGCGTGCTGTTGAT
66 GCCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATTGACCCGGTCCC-CCTTGTGTGCTACCGAT
* * * * * *
16804501 CCTGCTATCGCAACCGTCGGTCCGGTCTA
129 CCTTCTACCGTAACCCTCAGTCC-GTCTG
* * * * * * * * *
16804530 ATCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCTTGCAGGCGCTG
1 ATCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTC
* ** * * * * * * ** * * ** *
16804594 ACCCGGCCGAAAAGGCATAATGCACAAGCCGAGGTTTGGCCCAATCCCCCTCTGCGTACTGTCGG
65 AGCCGATCGGAGAGGCAGAATGCGCAAGCCG-GGATTGACCCGGTCCCCCT-TGTGTGCTACCGA
** * ** *
16804659 TCCCGCTAGCACAACCCTCAGTCCGACTAGG
128 TCCTTCTACCGTAACCCTCAGTCCGTCT--G
* * *
16804690 GT-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGGGCGCTCA
1 ATCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
** *
16804754 ATCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCAGCCCGGTCCCCCTTGTGTGCTACCGAT
66 GCCGATCGGAGAGGCAGAATGCGCAAGCC-GGGATTGA-CCCGGTCCCCCTTGTGTGCTACCGAT
*
16804818 -CTTGCTACCGTAACCCTCAATCCAGTCTG
129 CCTT-CTACCGTAACCCTCAGTCC-GTCTG
* * * * ** *
16804847 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCATTG
1 ATCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTC
* * *
16804911 AGCC-AGTCGGAGAGGCATAATGCGCAAGCCAGGGATTGACCCGGTCCCCCTCTATGTGCTATCG
65 AGCCGA-TCGGAGAGGCAGAATGCGCAAGCC-GGGATTGACCCGGTCCCCCT-TGTGTGCTACCG
* * * *
16804975 ATCCCTCTACCATAACCCTCGGTCCGGCTGG
127 ATCCTTCTACCGTAACCCTCAGTCCGTCT-G
** * *
16805006 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 ATCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * ** * * * * * * * *
16805071 GCCGACCAGAGAGATAGAATGTGCAAGTCGAGGATCGGCCTGGTCCCCTTTGCGTGCTACTGATC
66 GCCGATCGGAGAGGCAGAATGCGCAAGCCG-GGATTGACCCGGTCCCCCTTGTGTGCTACCGATC
* * *
16805136 CTTCTATCGCAACCCTCAGTCTGGTCTG
130 CTTCTACCGTAACCCTCAGTC-CGTCTG
*
16805164 ATCTTAGAC-TGAGAATGAACTCCGTATGC
1 ATCTTAGACATG-GAATGAACTCCCTATGC
16805193 TTAGACTGGG
Statistics
Matches: 516, Mismatches: 124, Indels: 46
0.75 0.18 0.07
Matches are distributed among these distances:
157 11 0.02
158 262 0.51
159 236 0.46
160 7 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
ATCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGATTGACCCGGTCCCCCTTGTGTGCTACCGATCC
TTCTACCGTAACCCTCAGTCCGTCTG
Found at i:16805205 original size:26 final size:26
Alignment explanation
Indices: 16805166--16805218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16805156 CTGGTCTGAT
* *
16805166 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACCCCATATG
*
16805192 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGAGAATGAACCCCATATG
16805218 C
1 C
16805219 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACCCCATATG
Found at i:16805805 original size:26 final size:26
Alignment explanation
Indices: 16805776--16805826 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16805766 CCGGTCCAAT
* *
16805776 CTTAGAGTGGGAATGAACTCCATATA
1 CTTAGACTGGGAATCAACTCCATATA
* *
16805802 CTTAGACTGGGGATCAACTTCATAT
1 CTTAGACTGGGAATCAACTCCATAT
16805827 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATA
Found at i:16806311 original size:355 final size:348
Alignment explanation
Indices: 16805619--16806425 Score: 783
Period size: 355 Copynumber: 2.3 Consensus size: 348
16805609 TGGTTGGGTT
* * * * *
16805619 TTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGTGCTCAACC
1 TTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAGCC
* * * * *
16805684 GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTACGTACTGTCTATCCTG
66 GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGCCCCCCCTACGTACTGTCGATCCTG
* * *
16805749 CTGTCGTAACCCTCAGTCCGGTCCAATCTTAGAGTGGGAATGAACTCCATATACTTAGACTGGGG
131 CTGTCGTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATATACTTAGACTGGGA
* * * * *
16805814 ATCAACTTCATATGCCTAAGTCAACCCATGAAATAAGCATGCGGGCCCTCAGCCGACTGGAGAGG
196 ATCAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCGGGCACTCAGCCAACTGGAGAGG
* * * *
16805879 CATAATACGGAAGCCAGGGATCAGCCCGGTCCCTCTCTGCATGCTGTCGATCCCGCTGCCGGTCC
261 CAGAATACGCAAGCCAGGGATCAGCCCGGTCCCTCCCTGCATGCTGT--AT--CGAT-CC-GT-C
*
16805944 TGCTGCCACAACCCTC-GATC-CGACTAGGGC
319 TGCTGCCACAACCCTCAG-TCTCGACT-GAGC
* *
16805974 TTAGACACAGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCC
1 TTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAGCC
* * * *
16806039 TGTCGGAGAGGCAGAATGTGTAAGCTGGGGATC-GACCCGGGCCCCCCCTATGTACTGTCGATCC
66 GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG-CCC-GGCCCCCCCTACGTACTGTCGAT-C
* * * *
16806103 TGCTGCTGGTCCTACTACCGTAACCCTCGGTCTGGTTCGATCTTAAACTGGGAATGAACTCCATA
128 --CTGCT-G------T--CGTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATA
* * * * * * *
16806168 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAGCCCACGGAATGAGCGTGCGGGCACTC
182 TACTTAGAC-TGGGAATCAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCGGGCACTC
* **
16806232 AGCCAACTGGAGAGGCAGAATGCGCAAGCC-GAGGATCAGCTTGGTCCC-CCCTGCATGCTGT-T
246 AGCCAACTGGAGAGGCAGAATACGCAAGCCAG-GGATCAGCCCGGTCCCTCCCTGCATGCTGTAT
* * * *
16806294 -GAT-C-T-TGCTGTCACAACCCTCAGTCTGGTCTGATC
310 CGATCCGTCTGCTGCCACAACCCTCAGTCTCGACTGAGC
** * * * * * *
16806329 TTAGACTGGGAATGATCT-TGGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGC
1 TTAGACACGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAGC
* *
16806393 CGGTCGGAGGGGCATAATGTGCAAGCCGGGGAT
65 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGAT
16806426 TGGCCCGGTC
Statistics
Matches: 372, Mismatches: 61, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
354 2 0.01
355 188 0.51
356 24 0.06
357 2 0.01
359 6 0.02
360 1 0.00
361 2 0.01
364 1 0.00
366 1 0.00
367 13 0.03
368 131 0.35
369 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (348 bp):
TTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGCCCCCCCTACGTACTGTCGATCCTG
CTGTCGTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATATACTTAGACTGGGA
ATCAACTCCATATGCCTAAGCCAACCCACGAAATAAGCATGCGGGCACTCAGCCAACTGGAGAGG
CAGAATACGCAAGCCAGGGATCAGCCCGGTCCCTCCCTGCATGCTGTATCGATCCGTCTGCTGCC
ACAACCCTCAGTCTCGACTGAGC
Found at i:16807688 original size:158 final size:158
Alignment explanation
Indices: 16807392--16807884 Score: 571
Period size: 158 Copynumber: 3.1 Consensus size: 158
16807382 ACTCCACATG
* * *
16807392 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGTCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG-
* * * * *
16807457 CTG-TCGGAGAGGCATAATGCGTAAGTCGAGGATCGGCCTGATCCCCCCTACATGCTGTCGATCC
65 CCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
* * * *
16807521 TACTACCACAACCCTCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCAGTCCAGTCTGAT
* * *
16807550 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
16807614 CCGACCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTTTCGGTCC
65 CCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
* * **
16807679 CGCTGCCACAACCCTCAGTCTAG-CTGGGG
130 TGCTGCCACAACCCTCAGTCCAGTCT-GAT
* * * *
16807708 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
16807773 CAATCGGAGAGGCAGAATCCGTAAGCCAGGGATCGACCCGCTCCCCCCTGCGTGCTGCCGATCCT
66 CGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
16807838 GCTGCCACAACCCTCAGTCCAGTCTGAT
131 GCTGCCACAACCCTCAGTCCAGTCTGAT
*
16807866 CTTAGA-TTGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16807885 TTGTATGCTT
Statistics
Matches: 276, Mismatches: 53, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
157 6 0.02
158 267 0.97
159 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCCAGTCTGAT
Found at i:16807916 original size:26 final size:26
Alignment explanation
Indices: 16807866--16807918 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16807856 CCAGTCTGAT
* **
16807866 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16807892 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16807918 C
1 C
16807919 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16808910 original size:26 final size:25
Alignment explanation
Indices: 16808874--16808932 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
16808864 CCCGGCCCCC
*
16808874 CTGTGTGCTTAGACTGGGAAAGAACT
1 CTGTATGCTTAGACTGGG-AAGAACT
*
16808900 CTGTATGCTTAGACTGGGATGAACT
1 CTGTATGCTTAGACTGGGAAGAACT
*
16808925 CCGTATGC
1 CTGTATGC
16808933 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 13 0.43
26 17 0.57
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (25 bp):
CTGTATGCTTAGACTGGGAAGAACT
Found at i:16808930 original size:25 final size:26
Alignment explanation
Indices: 16808879--16808932 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
16808869 CCCCCCTGTG
*
16808879 TGCTTAGACTGGGAAAGAACTCTGTA
1 TGCTTAGACTGGGAAAGAACTCCGTA
*
16808905 TGCTTAGACTGGG-ATGAACTCCGTA
1 TGCTTAGACTGGGAAAGAACTCCGTA
16808930 TGC
1 TGC
16808933 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCCGTA
Found at i:16809595 original size:26 final size:26
Alignment explanation
Indices: 16809546--16809626 Score: 144
Period size: 26 Copynumber: 3.1 Consensus size: 26
16809536 GACTGGGGCT
16809546 TAGACATGGAATTGAACTCTGCATGCC
1 TAGACATGG-ATTGAACTCTGCATGCC
*
16809573 TAGACATGGATTGAACTCCGCATGCC
1 TAGACATGGATTGAACTCTGCATGCC
16809599 TAGACATGGATTGAACTCTGCATGCC
1 TAGACATGGATTGAACTCTGCATGCC
16809625 TA
1 TA
16809627 AGCCAACCCA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
26 43 0.83
27 9 0.17
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACATGGATTGAACTCTGCATGCC
Found at i:16810108 original size:26 final size:26
Alignment explanation
Indices: 16810072--16810124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16810062 CCAGTCTAAT
*
16810072 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16810098 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16810124 C
1 C
16810125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16810397 original size:159 final size:159
Alignment explanation
Indices: 16810098--16810473 Score: 351
Period size: 159 Copynumber: 2.4 Consensus size: 159
16810088 ACTTCGTATG
* * * *
16810098 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAGC
* * ** * * * ** * *
16810163 CGATCGGAGAGGCATAATGCGCAAGCCTAGGATCGCCCCGGTCCTTCTATGCTTGCTGTCGGTCC
66 CGACCGAAGACCCATAATGCACAAGCCGAGGATCGCCCCGATCCCCCTATACGTGCTGTCGGTCC
** * *
16810228 TGCTGCCACAAGCCTCGGTTTGATCTGAT
131 CACTACCACAACCCTCGGTTTGATCTGAT
* ** *
16810257 CTTAGACTGGGAATCAACTCTGTATGCATAAGTCAACCCATGAAATGAGCATGCGGGCGTTGAGC
1 CTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAGC
* * * * * * *
16810322 TGGCCGAAGACCCATAATGCATAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCC
66 CGACCGAAGACCCATAATGCACAAGCCGAGGATCGCCCCGATCCCCCTATACGTGCTGTCGGTCC
* * * *
16810387 CACTATCACAACCCTCGGTCTG-GCTGGGT
131 CACTACCACAACCCTCGGTTTGATCT-GAT
* * * * * * *
16810416 TTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC
1 CTTAGAC-TGGGAATCAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATGCGGGC
16810474 TGTCAGCCGG
Statistics
Matches: 171, Mismatches: 44, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
158 2 0.01
159 168 0.98
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCACAAAATGAGCATGCGGGCGCTGAGC
CGACCGAAGACCCATAATGCACAAGCCGAGGATCGCCCCGATCCCCCTATACGTGCTGTCGGTCC
CACTACCACAACCCTCGGTTTGATCTGAT
Found at i:16810590 original size:26 final size:26
Alignment explanation
Indices: 16810561--16810613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16810551 CCGGTCCAAT
*
16810561 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
16810587 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
16810613 C
1 C
16810614 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16811310 original size:26 final size:26
Alignment explanation
Indices: 16811272--16811324 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16811262 GGCTCAAAAT
16811272 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
16811298 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
16811324 C
1 C
16811325 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16811651 original size:26 final size:26
Alignment explanation
Indices: 16811615--16811667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16811605 CCAGTCTGAT
* *
16811615 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16811641 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16811667 C
1 C
16811668 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16811897 original size:343 final size:342
Alignment explanation
Indices: 16811270--16811912 Score: 880
Period size: 343 Copynumber: 1.9 Consensus size: 342
16811260 GTGGCTCAAA
*
16811270 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAA
1 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
* * * * *
16811335 CCACGAAACTAGCGTACAGGCGTTCAGTCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGAC
66 CCACGAAAATAGCGTACAGGCGCTCAGCCGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCGAC
* * ** * *
16811400 ACGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGATCCGACTGGGGCTTAGACA
131 ACGGTCCCCCTATGCGTGCTACCGGTCCCGCTGCCACAACCCTAGATCCGACTGGGGCTTAAACA
* * * ** *
16811465 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTTAGCCGGTCGGA
196 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTGAGCCGACCGAA
16811530 GAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTACTGTCGC
261 GAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGT-CCCCCTGCGTGCTGTCGATCCTACTGTCGC
16811595 AACCCTCGATCCAGTCTG
325 AACCCTCGATCCAGTCTG
* * * *
16811613 ATCTTAGATTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
16811677 CCCAC-AAAATGAGCGTGCAGGCGCTGAGCCGGCCGGAGAGGCATAATGTGCAAGCCTAGGATCG
65 ACCACGAAAAT-AGCGTACAGGCGCTCAGCCGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCG
* * * *
16811741 GCCCGGTCCTCCTATGCGTGCTACCGGTCCCGCTGCCACAACCCTCAG-TCCGGCTGGGGCTTAA
129 ACACGGTCCCCCTATGCGTGCTACCGGTCCCGCTGCCACAACCCT-AGATCCGACTGGGGCTTAA
* * * *
16811805 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGTGCTGAGTCGAC
193 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTGAGCCGAC
* * *
16811869 CGAAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCT
257 CGAAGAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCT
16811913 CTGCATGCTA
Statistics
Matches: 259, Mismatches: 37, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
342 12 0.05
343 246 0.95
344 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
CCACGAAAATAGCGTACAGGCGCTCAGCCGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCGAC
ACGGTCCCCCTATGCGTGCTACCGGTCCCGCTGCCACAACCCTAGATCCGACTGGGGCTTAAACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTGAGCCGACCGAA
GAGGCAGAATGAGCAAGCCGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCA
ACCCTCGATCCAGTCTG
Found at i:16811929 original size:159 final size:159
Alignment explanation
Indices: 16811640--16812079 Score: 539
Period size: 159 Copynumber: 2.8 Consensus size: 159
16811630 AACTTCGTAT
* * *
16811640 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* * * ** * * * *
16811705 CCGGCCGGAGAGGCATAATGTGCAAGCCTAGGATCGGCCCGGTCCTCCTATGCGTGCTACCGGTC
66 TCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGGTC
*
16811770 CCGCTGCCACAACCCTCAGTCCGGCTGGG
131 CCACTGCCACAACCCTCAGTCCGGCTGGG
* ** * * *
16811799 GCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
* *
16811864 TCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGGTC
66 TCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGGTC
* *
16811929 CCACTGCCATAACCCTCAGTCTGGCTGGG
131 CCACTGCCACAACCCTCAGTCCGGCTGGG
* * * *
16811958 GCTCAGACAT-GGAATG-ACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-GCGTGCGGGCGCTG
* * * *
16812020 AGTCGACCGGAGAGGTAGAATGCACAAGCCGGGGATCGG-TCTGATCCCCC-CTGCATGCTA
64 AGTCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTC-GGTCCCCCTCTGCATGCTA
16812080 TTGATCCTAC
Statistics
Matches: 239, Mismatches: 39, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
157 13 0.05
158 77 0.32
159 148 0.62
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
TCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGGTC
CCACTGCCACAACCCTCAGTCCGGCTGGG
Found at i:16812157 original size:26 final size:26
Alignment explanation
Indices: 16812117--16812167 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16812107 CAGTCCGATC
*
16812117 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
16812143 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16812168 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16813248 original size:159 final size:158
Alignment explanation
Indices: 16812852--16813300 Score: 414
Period size: 158 Copynumber: 2.8 Consensus size: 158
16812842 TGAACTCCAT
* * * *
16812852 ATGCTTAGACATGGAATGAACTTCGTATGCCGAAGCCAACCCACGAAACGAGCATGTGGGCACTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTC
* * * *
16812917 AGTCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCT-GATCCCCC-CTGTGCGCTATCG
66 AG-C-ACCGGAGAGGCATAATGCGCAAGCCGGGGATC-AGCTCGGTCCCCCTCTATGTGCTATCG
** ** * *
16812980 ATCCTGCTACCGTAACCCTCGGTCCGATCTG
128 ATCCCACTACCACAACCCTCAGTCCGAGCTG
* * * * * *
16813011 AT-CTTAGAC-TGGGAATGAACTCCGTAT-CCATAAATCAACCAACAAAATGAGCGTGCGGGCGC
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGCATGCGGGCAC
* * * *
16813073 TGAGCCGACCGAAGAGGCATAATGCGCAATCCGGGGATCAGCTCGGTCCCCCTCTATGTGCTGTT
64 TCAG-C-ACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTATGTGCT-AT
*
16813138 CG-TCCCACTGCCACAACCCTCAGTCCG-GCTG
126 CGATCCCACTACCACAACCCTCAGTCCGAGCTG
* * *
16813169 -TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCACC
1 AT-GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACT
* * * * * *
16813233 CAGCATTCTGGAGAGGTAGAATGCGTAAGCCGAGGATCAGC-CTGGT-CCCCTCTATGTGCTACC
65 CAGCA--CCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTC-GGTCCCCCTCTATGTGCTATC
16813296 GATCC
127 GATCC
16813301 TGCTACTGCA
Statistics
Matches: 232, Mismatches: 45, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
157 10 0.04
158 109 0.47
159 107 0.46
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTC
AGCACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTATGTGCTATCGATC
CCACTACCACAACCCTCAGTCCGAGCTG
Found at i:16813359 original size:26 final size:26
Alignment explanation
Indices: 16813330--16813382 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16813320 CCGGTCCAAT
16813330 CTTAGACTACGAATGAACTCCATATG
1 CTTAGACTACGAATGAACTCCATATG
** * *
16813356 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCATATG
16813382 C
1 C
16813383 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCATATG
Found at i:16813810 original size:158 final size:158
Alignment explanation
Indices: 16813550--16813933 Score: 349
Period size: 158 Copynumber: 2.4 Consensus size: 158
16813540 GCTTAGACAT
* * * ** * * * * * *
16813550 GGAATGAACTCTGTATGCCTAAGCCATCCCATGAAACAAACCTGCGAGCGCTCAGCCGA-CTAGA
1 GGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATC-GGA
* * * * * ** * *
16813614 GAGGCAGAATGCGTAAGCCGGGGATC-GACTCGATCCCCCCTGCATGCTACCAATCCTGCTGCTA
65 GAGGTAGAATACGTAAGTCGGGGACCAG-CCCGGCCCCCCCTGCATGCTACCAATCCTGCTACCA
* *
16813678 CAACCCTCGGTTCTGTCCGATCTTAAACTG
129 CAACCCTCAGTTCGGTCCGATCTTAAACTG
* * ** *
16813708 GGAATGAACTCCGTATGCCCAAGCCAACCCACAAAATGAGCTTGCGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATCGGAG
* ** ** *
16813773 AGGTAGAATACGTAAGTCGGGGACCAGCCCGGCCCCCCTTGTGTGCTGTCAATCCTGCTACCGCA
66 AGGTAGAATACGTAAGTCGGGGACCAGCCCGGCCCCCCCTGCATGCTACCAATCCTGCTACCACA
* * * * *
16813838 ACCCTCAGTTGGGTTCGATTTTAGATTG
131 ACCCTCAGTTCGGTCCGATCTTAAACTG
* * * * *
16813866 GGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGTGGGCACTGAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATCGGAG
16813931 AGG
66 AGG
16813934 CATAATGCGT
Statistics
Matches: 179, Mismatches: 45, Indels: 4
0.79 0.20 0.02
Matches are distributed among these distances:
158 177 0.99
159 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCCAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATCGGAG
AGGTAGAATACGTAAGTCGGGGACCAGCCCGGCCCCCCCTGCATGCTACCAATCCTGCTACCACA
ACCCTCAGTTCGGTCCGATCTTAAACTG
Found at i:16814933 original size:26 final size:26
Alignment explanation
Indices: 16814895--16814948 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16814885 GGCTCAAACT
16814895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16814921 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16814947 CT
1 CT
16814949 AAGCGAACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16815254 original size:26 final size:26
Alignment explanation
Indices: 16815225--16815277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16815215 CCGGTTAGAT
* *
16815225 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
16815251 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
16815277 C
1 C
16815278 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:16815576 original size:195 final size:196
Alignment explanation
Indices: 16815196--16815579 Score: 470
Period size: 195 Copynumber: 2.0 Consensus size: 196
16815186 CCCCCCTACA
* * ** * *
16815196 TGCTGCCGCAACCCTCGGTCCGGTTAGATCTTAGACTGGGAATGATCTCCGTATGCTTAAACTGG
1 TGCTACCGCAACCCTCGGTCCGATTAGATCTTAGACTGAAAATGAACTCCATATGCTTAAACTGG
* * * *
16815261 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCAGGCGCTCAACCGATCGGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCGCTCAACCGATCGGAGA
* * * * *
16815326 GGCAGAATGCGCAAGTCGAGGCTCGACCCGATCCCCTCTGCGTGCTATTGATCCTACTGCTGGCC
131 GGCAGAATGCACAAGCCGAGGCTCGACCCGATCCCCCCTACGTGCTATCGATCCTACTGCTGGCC
16815391 C
196 C
* *
16815392 TGCTACCGCAACCCTCGGTCTGATCT-GATCTTAGACT-AAAATGAACTCCATATGCTTAGACAT
1 TGCTACCGCAACCCTCGGTCCGAT-TAGATCTTAGACTGAAAATGAACTCCATATGCTTAAAC-T
* * * **
16815455 -GGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGATCGGA
64 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCGCTCAACCGATCGGA
* * * * *
16815519 GAGGTAGAATGCACAAGCCGAGGAC-CGACCTGGTCCCCCCTATGTGCTGTCGATCCTACTG
129 GAGGCAGAATGCACAAGCCGAGG-CTCGACCCGATCCCCCCTACGTGCTATCGATCCTACTG
16815580 TCACAACACT
Statistics
Matches: 158, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
195 123 0.78
196 34 0.22
197 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (196 bp):
TGCTACCGCAACCCTCGGTCCGATTAGATCTTAGACTGAAAATGAACTCCATATGCTTAAACTGG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCGCTCAACCGATCGGAGA
GGCAGAATGCACAAGCCGAGGCTCGACCCGATCCCCCCTACGTGCTATCGATCCTACTGCTGGCC
C
Found at i:16815822 original size:159 final size:158
Alignment explanation
Indices: 16815445--16815852 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 158
16815435 AACTCCATAT
* * *
16815445 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAG
* * * * * * * *
16815510 TCGATCGGAGAGGTAGAATGCACAAGCCGAGGACCGACCTGGTCCCCCCTATGTGCTGTCGATCC
66 CCAATCGGAGAGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTATGTACTGGCGATCC
* ** *
16815575 TACTGTCACAACACTCGGTCCGGTCCAA
131 CACTACCACAACACTCGATCCGGTCCAA
* * * * * * * *
16815603 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGT-TCAGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGT-GGGTGCTC
* ** ** * *
16815666 AGCCAATCGGAGAGGCATAATGCGTAAGCCAAGGATTGACCCGATCCCCCTCTGTGTACTGGCGG
64 AGCCAATCGGAGAGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCC-CTATGTACTGGCGA
* * ***
16815731 TCCCACTACCACAACCCTCGATCTGG-CTGGG
128 TCCCACTACCACAACACTCGATCCGGTC-CAA
* *
16815762 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAG
****
16815827 CTGGCCGGAGAGGCAGAATGCACAAG
66 CCAATCGGAGAGGCAGAATGCACAAG
16815853 ATGGGGATCG
Statistics
Matches: 192, Mismatches: 52, Indels: 11
0.75 0.20 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.46
159 100 0.52
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAG
CCAATCGGAGAGGCAGAATGCACAAGCCAAGGACCGACCCGATCCCCCCTATGTACTGGCGATCC
CACTACCACAACACTCGATCCGGTCCAA
Found at i:16815950 original size:26 final size:26
Alignment explanation
Indices: 16815921--16815973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16815911 CCGGTTCGAT
16815921 CTTAGACTAGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* * *
16815947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
16815973 C
1 C
16815974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:16816354 original size:685 final size:685
Alignment explanation
Indices: 16815445--16816680 Score: 1729
Period size: 685 Copynumber: 1.8 Consensus size: 685
16815435 AACTCCATAT
*
16815445 GCTTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
16815510 TCGATCGGAGAGGTAGAATGCACAAGCCGAGGACCGACCTGGTCCCCCCTATGTGCTGTCGATCC
66 CCGACCGGAGAAGTAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTGTCAATCC
* *
16815575 TACTGTCACAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 TACTATCACAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
* * * *
16815640 CCCACAAAATGAGCGTTCAGGTGCTGAGCCAATCGGAGAGGCATAATGCGTAAGCCAAGGATTGA
196 CCCACAAAACGAGCGTTAAGGTGCTGAGCCAATCGAAGAGGCATAATGCGTAAGCCAAGGATCGA
*** ** * *
16815705 CCCGATCCCCCTCTGTGTACTGGCGGTCCCACTACCACAACCCTCGATCTGGCTGGGGCTTAGAC
261 CCCGATCCCCCTCTACATACTACCAGTCCCACTACCACAACCCTCGATCTGACTGGGGCTTAGAC
* * * *
16815770 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGTGCTCAGCTGGCCGG
326 AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCCGGCCAG
* *
16815835 AGAGGCAGAATGCACAAGATGGGGATCGGCCCGGTTCCCCCTGCGTGCTGCCGATCCTACTGTCG
391 AGAGGCAGAATGCACAAGACGGGGATCGGCCCGATTCCCCCTGCGTGCTGCCGATCCTACTGTCG
* *
16815900 CAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAAATCCGTATGCTTAGACTGGGGATGAAC
456 CAACCCTCAATCCGGTTCGATCTTAGACTAGGAATGAAATCCGCATGCTTAGACTGGGGATGAAC
16815965 TCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGTGCTCAGCCGGCCGTAGAAGCCGATT
521 TCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGTGCTCAGCCGGCCGTAGAAGCCGATT
16816030 GGAGAGGCATAATGCGCAAGCCTGGGATCAACCCGATCCCCCTATGCGTGCTGCCAATCTCGCTG
586 GGAGAGGCATAATGCGCAAGCCTGGGATCAACCCGATCCCCCTATGCGTGCTGCCAATCTCGCTG
16816095 CCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
651 CCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
* * ** *
16816130 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
16816195 CCGGCCGGAGAAGTAGAATGCACAAGCCGAGGATCGGCCCGGTCCTCCGTGCGTGCTGTCAATCT
66 CCGACCGGAGAAGTAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTGTCAATCC
* ** * * **
16816260 TGCTATCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
131 TACTATCACAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
** * * * *
16816325 CCCATGAAACGAGCG-TAAGG-GCACTGAGCCGATCGAAGAGGCATAATGCTTAAGTCGAGGATC
196 CCCACAAAACGAGCGTTAAGGTG--CTGAGCCAATCGAAGAGGCATAATGCGTAAGCCAAGGATC
* * * * * ** * *
16816388 GGCCTGGTCCCTCTCTACATACTACCAGTTCTGCTACCACAACCCTCGGTCTGATTGGGGCTTAG
259 GACCCGATCCCCCTCTACATACTACCAGTCCCACTACCACAACCCTCGATCTGACTGGGGCTTAG
* * * * *
16816453 ACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAATGGGCGTGCGGGTGCTCAGCCGGTC
324 ACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCCGGCC
** * **
16816518 AGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATTCCCCCTGCGTGCTGCCGATCCTGTTGT
389 AGAGAGGCAGAATGCACAAGACGGGGATCGGCCCGATTCCCCCTGCGTGCTGCCGATCCTACTGT
* * * * *
16816583 CGTAACCTTCAATCCGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGATGA
454 CGCAACCCTCAATCCGGTTCGATCTTAGACTAGGAATGAAATCCGCATGCTTAGACTGGGGATGA
* *
16816648 ACTCCGTATGCCTAAGTCAACCCATGAAACGAG
519 ACTCCGTATGCCTAAGTCAACCAACGAAACGAG
16816681 TGTGCGGGCG
Statistics
Matches: 470, Mismatches: 79, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
683 1 0.00
684 4 0.01
685 465 0.99
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (685 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAGAAGTAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTGTCAATCC
TACTATCACAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCACAAAACGAGCGTTAAGGTGCTGAGCCAATCGAAGAGGCATAATGCGTAAGCCAAGGATCGA
CCCGATCCCCCTCTACATACTACCAGTCCCACTACCACAACCCTCGATCTGACTGGGGCTTAGAC
AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCCGGCCAG
AGAGGCAGAATGCACAAGACGGGGATCGGCCCGATTCCCCCTGCGTGCTGCCGATCCTACTGTCG
CAACCCTCAATCCGGTTCGATCTTAGACTAGGAATGAAATCCGCATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCAACGAAACGAGCATGTGGGTGCTCAGCCGGCCGTAGAAGCCGATT
GGAGAGGCATAATGCGCAAGCCTGGGATCAACCCGATCCCCCTATGCGTGCTGCCAATCTCGCTG
CCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
Found at i:16816514 original size:159 final size:157
Alignment explanation
Indices: 16816101--16816552 Score: 408
Period size: 159 Copynumber: 2.9 Consensus size: 157
16816091 GCTGCCGGTC
* * *
16816101 CTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
1 CTGCTACCACAACCCTCGGTCTGATTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
16816166 ACCCACGAAATGAGTGTGTGGGCGCTCAGCCGGCCGGAGAAGTAGAATGCACAAGCCGAGGATCG
66 ACCCATGAAATGAGCGTGAGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCG
* * * **
16816231 GCCCGGTCCTCCGTGCGTGCTGTCAAT
131 GCCCGGTCCTCCGTACATACTACCAAT
* ** * ** ** * *
16816258 CTTGCTATCGTAACCCTCGGT-TCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCATAAG
1 C-TGCTACCACAACCCTCGGTCT-GAT-TGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAG
* * * * * * * ** *
16816321 TCAACCCATGAAACGAGCGTAAGGGCACTGAGCCGATCGAAGAGGCATAATGCTTAAGTCGAGGA
63 CCAACCCATGAAATGAGCGTGAGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCGAGGA
* *
16816386 TCGGCCTGGTCCCTCTC-TACATACTACCAGTT
128 TCGGCCCGGT-CCTC-CGTACATACTACCA-AT
*
16816418 CTGCTACCACAACCCTCGGTCTGATTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCA
1 CTGCTACCACAACCCTCGGTCTGATTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** *
16816483 ACCCATGGAATGGGCGTGCGGGTGCTCAGCCGGTC-AGAGAGGCAGAATGTGCAAGCCGGGGATC
66 ACCCATGAAATGAGCGTGAGGGCGCTCAGCCGGTCGA-AGAGGCAGAATGCACAAGCCGAGGATC
16816547 GGCCCG
130 GGCCCG
16816553 ATTCCCCCTG
Statistics
Matches: 222, Mismatches: 64, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 104 0.47
159 112 0.50
160 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (157 bp):
CTGCTACCACAACCCTCGGTCTGATTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAATGAGCGTGAGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCG
GCCCGGTCCTCCGTACATACTACCAAT
Found at i:16816635 original size:26 final size:26
Alignment explanation
Indices: 16816606--16816658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16816596 CCGGTTTGAT
16816606 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16816632 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16816658 C
1 C
16816659 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16818141 original size:26 final size:26
Alignment explanation
Indices: 16818112--16818164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16818102 CCGATTCGAT
16818112 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
16818138 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16818164 C
1 C
16818165 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16818817 original size:367 final size:366
Alignment explanation
Indices: 16817914--16818865 Score: 1191
Period size: 367 Copynumber: 2.6 Consensus size: 366
16817904 TCCCTCTCTG
* * * **
16817914 CGTGCTGCCGGTCCTGCTGCCACAACCCTCGATCTGGCTGAAGCTTAGACATGGAATGAACTCCC
1 CGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * ** *
16817979 TATG---AAGCGAACCCACGAAAAGGGAATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCA-
66 TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATG-AG
** * * * * *
16818040 CAAGCCGAGGATCAACCCGGTTCCCCTTGCGTGCTGTCGATCCTGCTACCACAACCCTTGATCCG
130 CAAG-CGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCT-GCGCAACCCTCGGTCCG
* * *
16818105 ATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAG
193 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAG
** * * *
16818170 TCAACCAATGAAACGAGCGTGCGGGCACTCAGCCGATTGGAGAGGCCAGTCGGAGAGGCATAATG
258 TCAACCAACAAAACAAGCGTGCGGGCACTCAGCCGATCGGAGAGGCCAGCCGGAGAGGCATAATG
* * *
16818235 CGCAAACTGGGGATCAACCCAGTCCCCCTCTGCGTGCTGCCCAT
323 CGCAAACTCGGGATCAACCCAGTCCCCCTCTGCATGCTACCCAT
* ** * * *
16818279 CCTGCCCTCGATCCTACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
1 CGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * *
16818344 TATGCCTAAGCCAACCCTCGAAATGGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGAGC
66 TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGAGC
* * * * * *
16818409 AAGCCAGGGATTGGCCCGGTCCCCCCTCCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGG
131 AAGCGA-GGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTG-CGCAACCCTCGGTCCGG
*
16818474 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGT
194 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGT
* * *
16818539 CAACCCACAAAACAAGCGTGCGGGCGCTCAGCC-AGTCGGAGAGGTC-GACCGGAGAGGCATAAT
259 CAACCAACAAAACAAGCGTGCGGGCACTCAGCCGA-TCGGAGAGGCCAG-CCGGAGAGGCATAAT
* * * *
16818602 GTGCAAGC-CGGGATCAGCCC-GATCCCCCTCTGCATGCTACCGAT
322 GCGCAAACTCGGGATCAACCCAG-TCCCCCTCTGCATGCTACCCAT
** *
16818646 CGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGATGTGGAATGAACTCCG
1 CGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * * *
16818711 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGTGC
66 TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGAGC
* * * *
16818776 AAGTCGAGGATCGGTCCGGTCCCCCTTGTGTGCTATCGATCCTGCTGCAGCAACCCTCAGTCCGG
131 AAG-CGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGC-GCAACCCTCGGTCCGG
*
16818841 TCTGATCTTAGACTGGGAATGAACT
194 TCCGATCTTAGACTGGGAATGAACT
16818866 TCGTATGCAT
Statistics
Matches: 498, Mismatches: 78, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
365 58 0.12
366 2 0.00
367 222 0.45
368 216 0.43
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (366 bp):
CGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGAGC
AAGCGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCA
ACCAACAAAACAAGCGTGCGGGCACTCAGCCGATCGGAGAGGCCAGCCGGAGAGGCATAATGCGC
AAACTCGGGATCAACCCAGTCCCCCTCTGCATGCTACCCAT
Found at i:16819096 original size:159 final size:154
Alignment explanation
Indices: 16818656--16819156 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 154
16818646 CGTGCTGTCG
* * * *
16818656 GTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGATGTGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGA-CTGGAATGAACTCCGTATGCCTAAG
* *
16818721 CCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCG-ACCGGAGAGGCAGAATGTGCAAGTC-GAG
65 CCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGTA--GGAGAGGCAGAATGTGCAAGCCAG-G
** * *
16818784 GATCGGTCCGGTCCCCCTTGTGTGCTATC
127 GATCGACCCGATCCCCCTCGTGTGCTA-C
* ** * *
16818813 GATCCTGCTG-CAGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCAT
1 G-TCCTGCTGCCA-CAACCCTCGGTCCGGT-TGGGGCTTAGACT-GGAATGAACTCCGTATGCCT
* * ** * * **
16818876 AAGTCAACCCACAAAATGAGCGTATGGGCGCTGAGCCGGCT-GAAGAGGC-GTAATGCACAAGCC
62 AAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC-G-TAGGAGAGGCAG-AATGTGCAAGCC
* *
16818939 AGGGATCAACCCGTTCCCTCTCTACGTGCTGCTA-
124 AGGGATCGACCCGATCCC-C-CT-CGTG-TGCTAC
* * * *
16818973 GTCCAGCTGCCACAACCATCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAG
* * * *
16819038 CCAACCCATGAAATGGGCGTGCGAGCGGTCAGCCAGTAGGAGAGGCAGAATGTGCAAGCCAGGGA
65 CCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC-GTAGGAGAGGCAGAATGTGCAAGCCAGGGA
16819103 TCGACCCGATCCCCCCTAC-T-TGCTATC
129 TCGACCCGAT-CCCCCT-CGTGTGCTA-C
* *
16819130 GATCCTGTTGCCGCAACCCTCGGTCCG
1 G-TCCTGCTGCCACAACCCTCGGTCCG
16819157 ATCCTACACT
Statistics
Matches: 269, Mismatches: 53, Indels: 43
0.74 0.15 0.12
Matches are distributed among these distances:
155 5 0.02
157 7 0.03
158 130 0.48
159 109 0.41
160 10 0.04
161 3 0.01
162 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (154 bp):
GTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGTAGGAGAGGCAGAATGTGCAAGCCAGGGATC
GACCCGATCCCCCTCGTGTGCTAC
Found at i:16820921 original size:26 final size:26
Alignment explanation
Indices: 16820892--16820944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16820882 CCAATCTGAT
*
16820892 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
16820918 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
16820944 C
1 C
16820945 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:16822211 original size:159 final size:157
Alignment explanation
Indices: 16821770--16822226 Score: 357
Period size: 159 Copynumber: 2.9 Consensus size: 157
16821760 TGCCGGTCCT
* * *
16821770 GCTACCACAACCCCCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGATTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAAC
* ** * * * * *
16821835 CCACGAAACGAGCGTGTGGGCGCTCAATCGGCTGGAGAAGTAGAATGCACAAGCTGAGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGC-CAAACCGGGGATCGGC
* * * * *
16821900 CTGGTCCCCCGTGCGTGCTGTCAATCTT
130 CTGGTCCCCCGTACATACTATCAATCTC
* ** ** * * ** * * * *
16821928 ACTGTCGTAACCCTCGATTC-GGTCT-GATCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTC
1 GCTACCACAACCCTC-AGTCTGAT-TGGGGCTTAGACATA-GAATGAACTCCATATGCCTAAGCC
* * ** * * * * * * * * *
16821990 AACCCATGAAACGAGCGTACAAGCACTGAGCCAGTCGAAGAGGCATAACGCCTAAATCGGGGATC
63 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCC-AAACCGGGGATC
**
16822055 GGCCTGGTCCCTCTC-TACATACTATCGGT-TCC
127 GGCCTGGTCCC-C-CGTACATACTATCAATCT-C
*
16822087 GCTACCACAACCCTCAGTCTGATTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGATTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAAC
* * *
16822152 CCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAACCGGGGATTGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGC-CAAACCGGGGATCGGC
*
16822217 CCGGTCCCCC
130 CTGGTCCCCC
16822227 CTCCGTGCTG
Statistics
Matches: 214, Mismatches: 74, Indels: 23
0.69 0.24 0.07
Matches are distributed among these distances:
157 3 0.01
158 97 0.45
159 110 0.51
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTACCACAACCCTCAGTCTGATTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCCAAACCGGGGATCGGCC
TGGTCCCCCGTACATACTATCAATCTC
Found at i:16822309 original size:26 final size:26
Alignment explanation
Indices: 16822273--16822325 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16822263 CTGGTCCAAT
16822273 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16822299 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16822325 C
1 C
16822326 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16826306 original size:17 final size:17
Alignment explanation
Indices: 16826284--16826317 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16826274 TCAAGGGGTA
16826284 TTACCTCTATAGTCTCC
1 TTACCTCTATAGTCTCC
* *
16826301 TTACCTTTCTAGTCTCC
1 TTACCTCTATAGTCTCC
16826318 AAGCTACAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.35, G:0.06, T:0.44
Consensus pattern (17 bp):
TTACCTCTATAGTCTCC
Found at i:16828971 original size:26 final size:26
Alignment explanation
Indices: 16828924--16828976 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16828914 TCGATCTAAT
*
16828924 CTTAGACTGGGAATGACTTCTGTATG
1 CTTAGACTGGGAATAACTTCTGTATG
*
16828950 CTTAGACTGGGGATAAAC-TCTGTATG
1 CTTAGACTGGGAAT-AACTTCTGTATG
16828976 C
1 C
16828977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAACTTCTGTATG
Found at i:16829694 original size:26 final size:26
Alignment explanation
Indices: 16829657--16829709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16829647 GGCTGAAACT
*
16829657 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
* *
16829683 CTTAGACAAGGAATGAGCTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16829709 C
1 C
16829710 CTAGGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16830192 original size:25 final size:26
Alignment explanation
Indices: 16830158--16830209 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16830148 TCGGTCTGAT
16830158 CTTAGATTGGGAATGAACT-CGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
16830183 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
16830209 C
1 C
16830210 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:16830563 original size:26 final size:26
Alignment explanation
Indices: 16830525--16830580 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16830515 CTGGTCTGAT
16830525 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
16830551 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
16830577 CTTA
1 CTTA
16830581 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16831908 original size:159 final size:159
Alignment explanation
Indices: 16831606--16832424 Score: 625
Period size: 159 Copynumber: 5.2 Consensus size: 159
16831596 ACTCTGTATG
* * * * * *
16831606 CTTAGAC-ATGGAATGAAGTTCATATGCCTAAGCCAAACCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * *
16831670 TCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCTGCGTACTGTCGATC
65 TCGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATC
* **
16831735 CTGCTACCGTAACCCTCGGTTCGGTCTGAT
130 CTGCTGCCACAACCCTCGGTTCGGTCTGAT
* * ** * * ** *
16831765 CTTAGTCTAGGAATGAACTTCGTATGAATAAGTCAACCCAAGAAACGAGCGTGCGGGCGCAGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
16831830 CGATCGAAGAGGCATAATGCGTAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCC
** * **
16831895 CACTGCCACAACCCTCGGTCCGGT-TGGGG
131 TGCTGCCACAACCCTCGGTTCGGTCT-GAT
* * *
16831924 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
16831988 TCGATCAAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATC
65 TCGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATC
* * *
16832053 CTGCTGCCACAACCCTCAGTTTGGTCCGAT
130 CTGCTGCCACAACCCTCGGTTCGGTCTGAT
* * * * *
16832083 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACT-A-T
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
** * * * * ** * * * *
16832146 GCTGGCCGTAA-AGGCATAATGCACAAGCCGAGGATCGACCCAATCCTCCTCTGTGTGTTGCC-A
66 -C-GATCG-AAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGA
* * * **
16832209 GTCCCGCTGCCACAACCCTCGG-TCCGACTGGGG
128 -TCCTGCTGCCACAACCCTCGGTTCGGTCT-GAT
* * * * * *
16832242 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGTGCTCA-
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * ** * **
16832305 ACCAGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGT-CCCCCCTATGTGTTGTAGAT
65 TCGATC-GAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGAT
* ** * *
16832369 CCTGGTGCCGTAACCCTCGGTCCGATCTGAT
129 CCTGCTGCCACAACCCTCGGTTCGGTCTGAT
* * *
16832400 CTTACACTGGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
16832425 CCTTAGACTA
Statistics
Matches: 513, Mismatches: 130, Indels: 35
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.12
159 448 0.87
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTTCGGTCTGAT
Found at i:16832354 original size:318 final size:317
Alignment explanation
Indices: 16831605--16832354 Score: 901
Period size: 318 Copynumber: 2.4 Consensus size: 317
16831595 AACTCTGTAT
* * * * *
16831605 GCTTAGACATGGAATGAAGTTCATATGCCTAAGCCAAACCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGTGGGCGCTCAG
* * * *
16831670 TCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCTGCGTACTGTCGATC
66 TC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTACTGCCGATC
** * * * *
16831735 CTGCTACCGTAACCCTCGGTTCGGTCTGATCTTAGTCTAGGAATGAACTTCGTATGAATAAGTCA
130 CTGCTACCACAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGAATAAGTCA
* * ** * *
16831800 ACCCAAGAAACGAGCGTGCGGGCGCAGAGCCGATCGAAGAGGCATAATGCGTAAGCTGGGGATCG
195 ACCCAAGAAACGAGCGTGCGGGCACAGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCG
* * ** * **
16831865 GCTCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGGTTGGG
260 ACCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* *
16831923 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGTGGGCGCTCAG
* ** * * *
16831988 TCGATCAAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATC
66 TCGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTACTGCCGATC
* * * * **
16832053 CTGCTGCCACAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCA
130 CTGCTACCACAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGAATAAGTCA
* * * * *
16832118 ACCCATGAAACGAGCGTTCGGGCACTA-TGCTGGCCGTAA-AGGCATAATGCACAAGCCGAGGAT
195 ACCCAAGAAACGAGCGTGCGGGCAC-AGAGCCGACCG-AAGAGGCATAATGCACAAGCCGAGGAT
* * * *
16832181 CGACCCAATCCTCCTCTGTGTGTTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
258 CGACCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* * * * *
16832241 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGTGGGCGCTCAG
* * * *
16832306 CCAGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCC
66 TC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCC
16832355 TATGTGTTGT
Statistics
Matches: 362, Mismatches: 66, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
317 1 0.00
318 356 0.98
319 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGTGGGCGCTCAG
TCGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTACTGCCGATCC
TGCTACCACAACCCTCAGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGAATAAGTCAA
CCCAAGAAACGAGCGTGCGGGCACAGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGA
CCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGG
Found at i:16833536 original size:159 final size:159
Alignment explanation
Indices: 16833213--16834766 Score: 1079
Period size: 159 Copynumber: 9.7 Consensus size: 159
16833203 AAGAGCCCGA
* * * * * * *
16833213 CCGGAGAGGTAGAATGCGCTAGCCGGGGATCGGTCCGGTCCCCC-CTACATGCTATCGATCCTGC
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTAC
** * ** * ** * *
16833277 TATCGCAACCCTTAGTTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGAATGCCTAAGTCAAC
66 TGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
16833340 CCATGGAACGAACGTTCGGGTGCTAAGCCGG
129 CCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
16833371 CAGGAGATGCATAATGCACAAGCTGGGGATCGGCCCGGTCACCCTCTGCGTGCTATCAGTTCC-A
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATC-GATCCTA
** * *
16833435 CTGCCACAACCCTCAATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACC
65 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
16833500 CACGAAATGGGCGTGCGGGCGTTCAGCCTG
130 CACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
16833530 CCGGAGAGGCAGAATGCGCAAGGTGGGGACCGGCCCAGTCCCCC-CTACGTGCTGTCGATCCTAC
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTAC
* * * * **** * *
16833594 TGTCGCAACCCTCAGTCTGGTTCAATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACC
66 TGCCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * *
16833658 CACAAAACGAGCGTGCGGGTGCTCAGCCGA
130 CACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
16833688 CCGGAGAGGCAGAATGCGCAAG-TCGGGGACCAGTCCGGT-CCCCT-TGGGTGCTGTCGATCCTG
1 CCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTA
* ** *
16833750 CTGCCACAACCCTTGGTCCGGTCT-GATCTTAGAC-TGGAAATGAACTTCGTATGCCTAA-CTCA
65 CTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAGC-CA
* * * * * *
16833812 ACCCACGAAATGAGCGTTCGAGCACTGAGTCGG
127 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** ** * *
16833845 CCAGAGAGGCATAATGCGCAAGGC-AAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGTGCC-
1 CCGGAGAGGCAGAATGCGCAA-GCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT-CCT
* * * ** *
16833908 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGAACTCTGTATGCCTAAGCCAAC
64 ACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
16833973 CCATGAAACAAGTGTGCGGGTGCTCAGCCGG
129 CCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** *
16834004 CCGGAGAGGAAGAATACGCAAGCCGGGGATCGACTTGGTCCCCCCCTGCATGCTGCCATACCTAT
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT--CCCCCT-C-TGC-G---T-GCTA-
* * * * * ** * **
16834069 TGTTGGTCCTGCTGTCGCAACCCTCATTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
56 --TCGATCCTACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGC
* ** *
16834134 CTAAGCCAACCCACGAAACGAGCTTGCGGGCATTCAACCGG
119 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *** *
16834175 CCGAAGAGGCAGAATACGCAAGCCGGGGATTACCCCGGCCCCCCTCTGC--GCTATCGAT-CTCA
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCT-A
* ***
16834237 CTGCCACAACCCTCGATCCTACTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAAC
65 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAAC
* * *
16834301 CCACGAAATGGGCGTGCGGGCGCTCAGCCGA
129 CCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
16834332 CCGGAGAGGCAGAATGCGTAAGTTGGGGACCGGCCTGGTCCCCC-CTTACGTACTATCGATCCTG
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTC-TGCGTGCTATCGATCCTA
* ** * * *
16834396 CTGCCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TAGGAATGAACTCTGTATGTCTAAGTCAA
65 CTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * *
16834459 CCCACGAAACGAGCGTACGGGTGCTGAGCCGG
128 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * * * * *
16834491 CCAGAGAGGCATAATGCGCAAGCCAGGGA-CTGACCCGATCCCCCTCAGCGTGCTATCGGTCCCA
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GGCCCGGTCCCCCTCTGCGTGCTATCGATCCTA
* * * **
16834555 CTGCCACAACCCTCGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAA
65 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
16834620 GATGAAACG-GACGTGCGGGCACTCAGCTGA
130 CACGAAACGAG-CGTGCGGGCGCTCAGCCGG
* ** ** * * * ** *
16834650 CCAGAGAGGCAGAATGCATAAGCCAGGGATCGACACGGTCCCCC-CTGCATGCTGCCAATCCTAC
1 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTAC
* * * * **
16834714 TGCCACAACCTTCGGTCTGATTCGATCTTAGAC-TGGGAATGAACTCCGTATGC
66 TGCCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGC
16834767 TTAGACTGGG
Statistics
Matches: 1093, Mismatches: 254, Indels: 98
0.76 0.18 0.07
Matches are distributed among these distances:
156 5 0.00
157 246 0.23
158 225 0.21
159 458 0.42
160 20 0.02
161 6 0.01
162 1 0.00
163 3 0.00
164 1 0.00
167 4 0.00
168 3 0.00
169 6 0.01
170 2 0.00
171 113 0.10
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTAC
TGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGG
Found at i:16834010 original size:316 final size:314
Alignment explanation
Indices: 16833303--16834766 Score: 1030
Period size: 316 Copynumber: 4.6 Consensus size: 314
16833293 TCGGTCTGAT
* * * * * * *
16833303 CTTAGAC-TGGGAATGAACTC-CGAATGCCTAAGTCAACCCATGGAACGAACGTTCGGGTGCTAA
1 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * * * * *
16833366 GCCGGCAGGAGATGCATAATGCACAAG-CTGGGGATCGGCCCGGTCACCCTCTGCGTGCTATCAG
64 GCCGACCGGAGAGGCAGAATGCGCAAGTC-GGGGA-CCGACCGGTCCCCCT-TGGGTACTGTC-G
* * ** ** * * *
16833430 TTCC-ACTGCCACAACCCTCAATCCGGT-TGGGGCTTAGACATGGAATGAACTCCCTATTCCTAA
125 ATCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTTCGTATGCCTAA
* * * ** * * * * ***
16833493 GC-CAACCCACGAAATGGGCGTGCGGGCGTTCAGCCTGCCGGAGAGGCAGAATGCGCAAGGTGGG
188 -CTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGG
* ** * * * * * * * ****
16833557 GACCGGCCCAGTCCCCC-CTACGTGCTGTCGATCCTACTGTCGCAACCCTC-AGTCTGGTTCAAT
252 GATCAACCCGGTCCCCCTCTGCGTGCTATCGGTCC-ACTGCCACAACCCTCGA-TCTGGCTGGGG
* *
16833620 CTTAGAC-TGGGAATGAACT-TCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCA
1 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* *
16833683 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGTCCGGT-CCCCTTGGGTGCTGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACC-GACCGGTCCCCCTTGGGTACTGTCGATC
*
16833747 CTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAACTCA
128 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGG-AATGAACTTCGTATGCCTAACTCA
* * * * *
16833812 ACCCACGAAATGAGCGTTCGAGCACTGAGTCGGCCAGAGAGGCATAATGCGCAAGGCAAGGATCA
192 ACCCACGAAACGAGCGTTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCA
* * *
16833877 ACCCGGTCCCCCTCTGCGTGCTGTCGGTGCCGCTGCCACAACCCTCGGTCTGGCTGGGG
257 ACCCGGTCCCCCTCTGCGTGCTATCGGT-CCACTGCCACAACCCTCGATCTGGCTGGGG
** * * * *
16833936 CTTAGATGTGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
16834001 CGGCCGGAGAGGAAGAATACGCAAGCCGGGGATCGACTTGGTCCCCCCCTGCATGCTGCCATACC
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGAC-CGGT--CCCCCT---TG--G--GTA-C
* * * * ** * * ** *
16834066 TATTGTTGGTCCTGCTGTCGCAACCCTCATTTC-GACTGGGGCTTAGACATGGAATGAACTCCGT
120 ---TGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTTCGT
* * * * *
16834130 ATGCCTAAGC-CAACCCACGAAACGAGC-TTGCGGGCATTCAACCGGCC-GAAGAGGCAGAATAC
180 ATGCCTAA-CTCAACCCACGAAACGAGCGTT-CGGGCACTGAGCCGGCCAG-AGAGGCATAATGC
* * * * *
16834192 GCAAGCCGGGGATTACCCCGGCCCCCCTCTGC--GCTATCGATCTCACTGCCACAACCCTCGATC
242 GCAAGCCAGGGATCAACCCGGTCCCCCTCTGCGTGCTATCGGTC-CACTGCCACAACCCTCGAT-
*
16834255 CT-ACTGGGG
305 CTGGCTGGGG
* * *
16834264 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** *
16834329 CGACCGGAGAGGCAGAATGCGTAAGTTGGGGACCGGCCTGGTCCCCCCTTACGTACTATCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACC-GGT-CCCCCTTGGGTACTGTCGATCC
* * *
16834394 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC-TCTGTATGTCTAAGTCA
129 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTTC-GTATGCCTAACTCA
* **
16834458 ACCCACGAAACGAGCGTACGGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGA-CT
192 ACCCACGAAACGAGCGTTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATC-
* * * *
16834522 GACCCGATCCCCCTCAGCGTGCTATCGGTCCCACTGCCACAACCCTCGAT-TCGGTTGGGG
256 AACCCGGTCCCCCTCTGCGTGCTATCGGT-CCACTGCCACAACCCTCGATCT-GGCTGGGG
* *** * **
16834582 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAAGATGAAACG-GACGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGTGCTCAG
* * ** * * * * ** * * *
16834646 CTGACCAGAGAGGCAGAATGCATAAGCCAGGGATCGACACGGTCCCCCCTGCATGCTGCCAATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGAC-CGGTCCCCCTTGGGTACTGTCGATCC
* * * * *
16834711 TACTGCCACAACCTTCGGTCTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGC
129 TGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGACT-GGAATGAACTTCGTATGC
16834767 TTAGACTGGG
Statistics
Matches: 912, Mismatches: 184, Indels: 102
0.76 0.15 0.09
Matches are distributed among these distances:
314 8 0.01
315 119 0.13
316 236 0.26
317 159 0.17
318 122 0.13
319 8 0.01
320 2 0.00
322 2 0.00
324 2 0.00
326 1 0.00
327 9 0.01
328 118 0.13
329 8 0.01
330 114 0.12
331 4 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (314 bp):
CTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCGGTCCCCCTTGGGTACTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTTCGTATGCCTAACTCAACCC
ACGAAACGAGCGTTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAACCC
GGTCCCCCTCTGCGTGCTATCGGTCCACTGCCACAACCCTCGATCTGGCTGGGG
Found at i:16834292 original size:487 final size:486
Alignment explanation
Indices: 16833620--16834519 Score: 1046
Period size: 487 Copynumber: 1.8 Consensus size: 486
16833610 CTGGTTCAAT
* * ** *
16833620 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAAC
* * * ** * * * * * *
16833685 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGTCCGGTCCCCTTGGGTGCTGTCGATCCTG
66 CGACCGAAGAGGCAGAATACGCAAGCCGGGGACCACCCCGGCCCCCCTCGGCGCTATCGATCCTA
* * *
16833750 CTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGAAATGAACTTCGTATGCCTAA-CTCAAC
131 CTGCCACAACCCTCGATCC-GTCTGAGCTTAGACTGGAAATGAACTTCGTATGCCTAAGC-CAAC
* * * * * *
16833814 CCACGAAATGAGCGTTCGAGCACTGAGTCGGCCAGAGAGGCATAATGCGCAAGGCAAGGATCAAC
194 CCACGAAATGAGCGTGCGAGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGGCAAGGACCAAC
* * * * *
16833879 CCGGT-CCCCCTCTGCGTGCTGTCGGTGCC-GCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAG
259 CCGGTCCCCCCT-TACGTACTATCGAT-CCTGCTGCCACAACCCTCGGTCTGGTCT-GAGCTTAG
* * * *
16833941 A-TGTGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAGCCGGC
321 ACT-AGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGGC
* *
16834005 CGGAGAGGAAGAATACGCAAGCCGGGGATCGACTTGGTCCCCCCCTGCATGCTGCCATACCTATT
385 CAGAGAGGAAGAATACGCAAGCCAGGGATCGACTTGGTCCCCCCCTGCATGCTGCCATACCTATT
16834070 GTTGGTCCTGCTGTCGCAACCCTCATTTCGACTGGGG
450 GTTGGTCCTGCTGTCGCAACCCTCATTTCGACTGGGG
* * *
16834107 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGCATTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
* ** *
16834171 CCGGCCGAAGAGGCAGAATACGCAAGCCGGGGATTACCCCGGCCCCCCTCTGCGCTATCGAT-CT
65 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGACCACCCCGGCCCCCCTCGGCGCTATCGATCCT
*
16834235 CACTGCCACAACCCTCGATCC-TACTGGGGCTTAGACATGG-AATGAACTCTC-TATGCCTAAGC
130 -ACTGCCACAACCCTCGATCCGT-CT-GAGCTTAGAC-TGGAAATGAACT-TCGTATGCCTAAGC
* * * * * ****
16834297 CAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGTTGGGGAC
190 CAACCCACGAAATGAGCGTGCGAGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGGCAAGGAC
** * *
16834362 CGGCCTGGTCCCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTA
255 CAACCCGGTCCCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGAGCTTA
* * * *
16834427 GACTAGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGGC
320 GACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGGC
* * *
16834492 CAGAGAGGCATAATGCGCAAGCCAGGGA
385 CAGAGAGGAAGAATACGCAAGCCAGGGA
16834520 CTGACCCGAT
Statistics
Matches: 338, Mismatches: 64, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
485 1 0.00
486 6 0.02
487 315 0.93
488 16 0.05
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (486 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAAC
CGACCGAAGAGGCAGAATACGCAAGCCGGGGACCACCCCGGCCCCCCTCGGCGCTATCGATCCTA
CTGCCACAACCCTCGATCCGTCTGAGCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACCC
ACGAAATGAGCGTGCGAGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGGCAAGGACCAACCC
GGTCCCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGAGCTTAGACTAG
GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGGCCAGAGA
GGAAGAATACGCAAGCCAGGGATCGACTTGGTCCCCCCCTGCATGCTGCCATACCTATTGTTGGT
CCTGCTGTCGCAACCCTCATTTCGACTGGGG
Found at i:16834561 original size:646 final size:644
Alignment explanation
Indices: 16833457--16834706 Score: 1554
Period size: 646 Copynumber: 1.9 Consensus size: 644
16833447 TCAATCCGGT
* * * *
16833457 TGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGT
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAT
* * * * ** * * * *
16833522 TCAGCCTGCCGGAGAGGCAGAATGCGCAAGGTGGGGACCGGCCCAGTCCCCCCTACGTGCTGTCG
66 TCAACCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGGCCCCCCTACGCGCTATCG
* * ** *
16833587 ATCCTACTGTCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
131 ATCCTACTGCCACAACCCTCAGTCTGACTCAAGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* *
16833652 TCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGA
196 CCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGA
* ** * * *
16833717 CCAGTCCGGTCCCCTTGGGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAG
261 CCAGGCCGGTCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAG
* * *
16833782 ACTGGAAATGAACTTCGTATGCCTAACTCAACCCACGAAATGAGCGTTCGAGCACTGAGTCGGCC
326 ACTGGAAATGAACTTCGTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCACTGAGCCGGCC
* * * * * *
16833847 AGAGAGGCATAATGCGCAAGGCAAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGTGCCGCTG
391 AGAGAGGCATAATGCGCAAGCCAAGGATCAACCCGATCCCCCTCAGCGTGCTATCGGTCCCACTG
* ** ** **
16833912 CCACAACCCTCG-GTCTGGCTGGGGCTTAGATGTGGAATGAACTCTGTATGCCTAAGCCAACCCA
456 CCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAACA
* ** * * * * **
16833976 TGAAACA-AGTGTGCGGGTGCTCAGCCGGCCGGAGAGGAAGAATACGCAAGCCGGGGATCGACTT
520 TGAAACAGA-CGTGCGGGCACTCAGCCGACCAGAGAGGAAGAATACACAAGCCAGGGATCGACAC
16834040 GGTCCCCCCCTGCATGCTGCCATACCTATTGTTGGTCCTGCTGTCGCAACCCTCATTTCGAC
584 GGT-CCCCCCTGCATGCTGCCATACCTATTGTTGGTCCTGCTGTCGCAACCCTCATTTCGAC
* *
16834102 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGCAT
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAT
** *
16834167 TCAACCGGCCGAAGAGGCAGAATACGCAAGCCGGGGA-TTACCCCGGCCCCCCT-CTGCGCTATC
66 TCAACCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGGCCCCCCTAC-GCGCTATC
***
16834230 GAT-CTCACTGCCACAACCCTC-GATCCT-ACTGGGGCTTAGACAT-GGAATGAACTCTC-TATG
130 GATCCT-ACTGCCACAACCCTCAG-T-CTGACTCAAGCTTAGAC-TGGGAATGAACT-TCGTATG
* * * *
16834290 CCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGT
190 CCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGT
* *
16834355 TGGGGACC-GGCCTGGTCCCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCTGGTC
255 CGGGGACCAGGCC-GGT--CCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCCGGTC
* * * **
16834419 TGATCTTAGACTAGG-AATGAAC-TCTGTATGTCTAAGTCAACCCACGAAACGAGCGTACGGGTG
317 TGATCTTAGACT-GGAAATGAACTTC-GTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCA
* *
16834482 CTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGA-CTGACCCGATCCCCCTCAGCGTGCTA
380 CTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAAGGATC-AACCCGATCCCCCTCAGCGTGCTA
*
16834546 TCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
444 TCGGTCCCACTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * *
16834611 AAGCCAAAAGATGAAACGGACGTGCGGGCACTCAGCTGACCAGAGAGGCAGAATGCATAAGCCAG
509 AAGCCAAAACATGAAACAGACGTGCGGGCACTCAGCCGACCAGAGAGGAAGAATACACAAGCCAG
16834676 GGATCGACACGGTCCCCCCTGCATGCTGCCA
574 GGATCGACACGGTCCCCCCTGCATGCTGCCA
16834707 ATCCTACTGC
Statistics
Matches: 511, Mismatches: 80, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
643 7 0.01
644 125 0.24
645 116 0.23
646 258 0.50
647 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (644 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAT
TCAACCGGCCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGGCCCCCCTACGCGCTATCG
ATCCTACTGCCACAACCCTCAGTCTGACTCAAGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
CCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGA
CCAGGCCGGTCCCCTTACGTACTATCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAG
ACTGGAAATGAACTTCGTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCACTGAGCCGGCC
AGAGAGGCATAATGCGCAAGCCAAGGATCAACCCGATCCCCCTCAGCGTGCTATCGGTCCCACTG
CCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAACAT
GAAACAGACGTGCGGGCACTCAGCCGACCAGAGAGGAAGAATACACAAGCCAGGGATCGACACGG
TCCCCCCTGCATGCTGCCATACCTATTGTTGGTCCTGCTGTCGCAACCCTCATTTCGAC
Found at i:16835073 original size:159 final size:159
Alignment explanation
Indices: 16834898--16835188 Score: 406
Period size: 159 Copynumber: 1.8 Consensus size: 159
16834888 ACTGGTCTTG
* * * *
16834898 CTGCCACAACCTTCGGTCAAG-TCCGATCTTAGAC-TGGGAATGAACTTCCTATGCCTAAGTCAA
1 CTGCCACAACCCTCGGTCAAGCTCCG-GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * *
16834961 CCCATGAAACGAGCGTGCAGGCGCTGAGCTGATCGGAGAGGCATAATGCACAAGCTGGGGATCGA
64 CCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGA
16835026 CCCGATCCCTCTCTACATGCTGCCAGTCCCA
129 CCCGATCCCTCTCTACATGCTGCCAGTCCCA
** *
16835057 CTGCCACAACCCTCGGTCCGGCTGCGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCAAGCTCCGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
16835122 CATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCC
66 CATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACC
16835187 CG
131 CG
16835189 GTCCTCCATG
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
159 110 0.96
160 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCAAGCTCCGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACC
CGATCCCTCTCTACATGCTGCCAGTCCCA
Found at i:16835269 original size:159 final size:158
Alignment explanation
Indices: 16834898--16835269 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 158
16834888 ACTGGTCTTG
* * * ** *
16834898 CTGCCACAACCTTCGGTCAAGTCCGATCTTAGACTGGGAATGAACTTCCTATGCCTAAGTCAACC
1 CTGCCACAACCCTCGGTCCAGTCTGATCTTAGA-TCAGAATGAACTTCCTATGCCTAAGCCAACC
* * * *
16834963 CATGAAACGAGCGTGCAGGCGCTGAGCTGATCGGAGAGGCATAATGCACAAGCTGGGGATCGACC
65 CATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACC
16835028 CGATCCCTCTCTACATGCTGCCAGTCCCA
130 CGATCCCTCTCTACATGCTGCCAGTCCCA
* ** *
16835057 CTGCCACAACCCTCGGTCC-GGCTGCGGCTTAGA-CATGGAATGAACTCCCTATGCCTAAGCCAA
1 CTGCCACAACCCTCGGTCCAGTCTG-ATCTTAGATCA--GAATGAACTTCCTATGCCTAAGCCAA
* * * * *
16835120 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG
63 CCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGA
* * * * ***
16835185 CCCGGT-CCTC-CATGCGTGCTGTC-GATCTTG
128 CCCGATCCCTCTC-TACATGCTGCCAG-TCCCA
** * *
16835215 CTGCTGGCAACCCTCGTTCCAGTCTGATCTTAGATTCAGAATGAACTTCGTATGC
1 CTGC-CACAACCCTCGGTCCAGTCTGATCTTAGA-TCAGAATGAACTTCCTATGC
16835270 TTAGACTGGG
Statistics
Matches: 170, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 21 0.12
159 141 0.83
160 4 0.02
161 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGCCACAACCCTCGGTCCAGTCTGATCTTAGATCAGAATGAACTTCCTATGCCTAAGCCAACCC
ATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCC
GATCCCTCTCTACATGCTGCCAGTCCCA
Found at i:16835283 original size:502 final size:502
Alignment explanation
Indices: 16834394--16835331 Score: 1193
Period size: 502 Copynumber: 1.9 Consensus size: 502
16834384 CTATCGATCC
** * * *
16834394 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGTCTAAGTCAA
1 TGCTGCCACAACCCTCGGTCAAGTCCGATCTTAGACTAGGAATGAACTCTCTATGCCTAAGTCAA
* * * *
16834459 CCCACGAAACGAGCGTACGGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGACTGA
66 CCCACGAAACGAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCACAAGCCAGGGACTGA
* * * * * *
16834524 CCCGATCCCCCTCAGCGTGCTATCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGAC
131 CCCGATCCCCCTCAGCATGCTACCAGTCCCACTGCCACAACCCTCGATCCGGCTGCGGCTTAGAC
* *
16834589 ATGGAATGAACTCCCTATGCCTAAGCCAAAAGATGAAACGGACGTGCGGGCACTCAGCTGACCAG
196 ATGGAATGAACTCCCTATGCCTAAGCCAAAACATGAAACGGACGTGCGGGCACTCAGCCGACCAG
* *
16834654 AGAGGCAGAATGCATAAGCCAGGGATCGACACGGTCCCCCCTGCATGCTGCCAATCCTACTGCCA
261 AGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCATGCATGCTGCCAATCCTACTGCCA
* * * **
16834719 CAACCTTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
326 CAACCCTCGGTCTCAGTCGATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * *
16834784 TCCATCTGCCTAAGTCAAACCATGAAACGAGCGTGGGGGTGCTCAGTTGACCGGAGAGGCCGGTT
391 TCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGATGCTCAGTTGACCGGAGAGGCCGGTT
16834849 GGAGAAGAAAAATACGTAGAATGCGCTGTCGAACCTGCTACTGGTCT
456 GGAGAAGAAAAATACGTAGAATGCGCTGTCGAACCTGCTACTGGTCT
* *
16834896 TGCTGCCACAACCTTCGGTCAAGTCCGATCTTAGACTGGGAATGAACT-TCCTATGCCTAAGTCA
1 TGCTGCCACAACCCTCGGTCAAGTCCGATCTTAGACTAGGAATGAACTCT-CTATGCCTAAGTCA
* * * * * **
16834960 ACCCATGAAACGAGCGTGCAGGCGCTGAGCTGATCGGAGAGGCATAATGCACAAGCTGGGGA-TC
65 ACCCACGAAACGAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCACAAGCCAGGGACT-
* * *
16835024 GACCCGATCCCTCTCTA-CATGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGGCTGCGGCTTA
129 GACCCGATCCCCCTC-AGCATGCTACCAGTCCCACTGCCACAACCCTCGATCCGGCTGCGGCTTA
** * * *
16835088 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGC
193 GACATGGAATGAACTCCCTATGCCTAAGCCAAAACATGAAACGGACGTGCGGGCACTCAGCCGAC
* * ** * * * * * * * *
16835153 CGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCTCCATGCGTGCTGTCGATCTTGCTG
258 CAGAGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCATGCATGCTGCCAATCCTACTG
** * * *
16835218 CTGGCAACCCTCGTTC-CAGTCTGATCTTAGATTCAGAATGAACTTCGTATGCTTAGACT-GGGA
323 C-CACAACCCTCGGTCTCAGTC-GATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGGA
** * * *
16835281 TGAACTCTGTATGCCTAAGTTAACCCACGATACGAGCGTGCGGATGCTCAG
386 TGAACTCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGATGCTCAG
16835332 CTGGCCAGAG
Statistics
Matches: 364, Mismatches: 67, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
501 2 0.01
502 318 0.87
503 44 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (502 bp):
TGCTGCCACAACCCTCGGTCAAGTCCGATCTTAGACTAGGAATGAACTCTCTATGCCTAAGTCAA
CCCACGAAACGAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCACAAGCCAGGGACTGA
CCCGATCCCCCTCAGCATGCTACCAGTCCCACTGCCACAACCCTCGATCCGGCTGCGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAAAACATGAAACGGACGTGCGGGCACTCAGCCGACCAG
AGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCATGCATGCTGCCAATCCTACTGCCA
CAACCCTCGGTCTCAGTCGATCTTAGACTCAGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGATGCTCAGTTGACCGGAGAGGCCGGTT
GGAGAAGAAAAATACGTAGAATGCGCTGTCGAACCTGCTACTGGTCT
Found at i:16835993 original size:26 final size:26
Alignment explanation
Indices: 16835955--16836007 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835945 GGCTCAAACT
16835955 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16835981 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16836007 C
1 C
16836008 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16837047 original size:26 final size:26
Alignment explanation
Indices: 16837009--16837061 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16836999 GGCTCAAACT
16837009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16837035 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16837061 C
1 C
16837062 CTTTGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16837377 original size:157 final size:159
Alignment explanation
Indices: 16837034--16837377 Score: 415
Period size: 159 Copynumber: 2.2 Consensus size: 159
16837024 AACTCCGTAT
* ** * *
16837034 GCTTAGACATGGAATGAACTCCGTATGCCTTTGCCAACCCATGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
* * * * * *
16837099 TCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCACGATCCCCCTCTGCATGCTGTCGGTC
66 CCGATCGGAAAGGCAGAATGCGCAAGACGAGGATCGGCACGATCCCCCTCTGCATGCTGCCGATC
*
16837164 CTACTACCACAACCCTCGGTCCGGTTGGG
131 CTACTACCACAACCCTCGGTCCGGTTGGA
* ** *
16837193 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
* * **
16837258 CCGATC-GAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTGTGTGCTGCCGATC
66 CCGATCGGAAAGGCAGAATGCGCAAGACGAGGATCGGCACGATCCCCCTCTGCATGCTGCCGATC
* ** ** *
16837321 CTGCTACTGCAACCCTCGGTTTGGTTTGA
131 CTACTACCACAACCCTCGGTCCGGTTGGA
*
16837350 TCTTAGAC-TGAGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCATATGC
16837378 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
156 2 0.01
157 57 0.36
158 37 0.24
159 61 0.39
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
CCGATCGGAAAGGCAGAATGCGCAAGACGAGGATCGGCACGATCCCCCTCTGCATGCTGCCGATC
CTACTACCACAACCCTCGGTCCGGTTGGA
Found at i:16837402 original size:26 final size:26
Alignment explanation
Indices: 16837351--16837403 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16837341 TTGGTTTGAT
*
16837351 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTACATATG
* * *
16837377 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGAGAATGAACTACATATG
16837403 C
1 C
16837404 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTACATATG
Found at i:16837821 original size:158 final size:155
Alignment explanation
Indices: 16837532--16838062 Score: 546
Period size: 158 Copynumber: 3.4 Consensus size: 155
16837522 CTGTTGGTCT
* * *
16837532 TGCTACCACAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16837597 CCCACAAAACAAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATG--CAAGCCGAGGATCGA
*
16837662 CCTGGTCCCCCCTACGTGCTGTCGATCC
129 CCTGATCCCCCCTACGTGCTG-CGATCC
* * * * *
16837690 TGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAA
1 TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * ** *
16837755 CCCATGAAATGAGTGTGCGGGCGTTGAGTCGATCGGAGAGGTATAATGCATAGGCCGAGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCA-A-GCCGAGGATCGA
*
16837820 CCCGATCCCCCTCTACGTGCTGCTGATCC
129 CCTGATCCCCC-CTACGTGCTGC-GATCC
* * * ** * *
16837849 CGCTGCCACAACCCTCGGTCCGGCTGGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
1 TGCTACCACAACCCTCGGTCC-GATCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
*
16837912 AACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGCAAGCC-AGGGAT
64 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAA--TGCAAGCCGA-GGAT
* * * * *
16837976 TGGCCTGATCCCCCGTGCGTGCTACCGATCC
126 CGACCTGATCCCCCCTACGTGCT-GCGATCC
* * * *
16838007 TGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGC
1 TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
16838063 TTAGACTGGG
Statistics
Matches: 301, Mismatches: 60, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 167 0.55
159 117 0.39
160 5 0.02
161 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCAAGCCGAGGATCGACC
TGATCCCCCCTACGTGCTGCGATCC
Found at i:16838072 original size:26 final size:26
Alignment explanation
Indices: 16838036--16838088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16838026 CCGATCTGAT
16838036 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16838062 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16838088 C
1 C
16838089 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16839509 original size:26 final size:26
Alignment explanation
Indices: 16839480--16839532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16839470 TCGGTCCGAT
*
16839480 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16839506 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16839532 C
1 C
16839533 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16839932 original size:159 final size:159
Alignment explanation
Indices: 16839505--16839938 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 159
16839495 AACTTCGTAT
* * *** *
16839505 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTATGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
16839570 CTGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCT-TGCCTGCTGTCGATT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCCTGCTGTCGATC
* * * * * *
16839634 CTACTATCGCAACGCTCAATCCGGTTCAA
131 CCACTACCACAACCCTCAATCCAGCTCAA
* * * * * *
16839663 TCTTAGAC-TGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCATTCGGGTGCT-A
1 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
16839726 AGCCGGTCAGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGG
65 A-CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCCTGCTGTCGA
* * * ***
16839791 TCCCGCTGCCACAACCCTCTATCCAGCTGGG
129 TCCCACTACCACAACCCTCAATCCAGCTCAA
* * *
16839822 GCTTAGACATGGAATAAACTCCCCATGCCTAACCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
16839887 CCAACCGGAGAGGCAGAATGCGCAAGCCAGGGAACGGCACGGTCCCCC-CTGC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGC
16839939 ATACTGCCGA
Statistics
Matches: 214, Mismatches: 57, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.43
159 117 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCCTGCTGTCGATC
CCACTACCACAACCCTCAATCCAGCTCAA
Found at i:16840017 original size:26 final size:26
Alignment explanation
Indices: 16839981--16840033 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16839971 CCAGTCCGAT
*
16839981 CTTAGACTGGGAATGAACTAT-GTATG
1 CTTACACTGGGAATGAACT-TCGTATG
*
16840007 CTTACACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
16840033 C
1 C
16840034 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:16840926 original size:159 final size:158
Alignment explanation
Indices: 16840510--16840926 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 158
16840500 AACTCCTTAT
** * * *
16840510 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-CCTCAA
*
16840575 CCGGCTGTAGAGGCAGAATGCGCAAGCCGGGGA-CCGATCCGGTCCCTCCTTACGTGCTGTCGAT
65 CCGGCAG-AGAGGCAGAATGCGCAAGCCGGGGATCCGATCCGGTCCCTCCTTACGTGCTGTCGAT
* * * * *
16840639 CCTGCTACCGCAACCTTCGGTCTGATCTGA
129 CCCGATACCACAACCCTCGGTCCGATCTGA
* * * ** * *
16840669 TCTTAGAC-TGGGAATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCGTTAGGGCGTTAA
1 GCTTAGACAT-GGAATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCCTCAA
* * * * ** *
16840733 GCTGG-AGGGAGAGGCATAATGCGCAAGTCAGGGATTGGCT-CGGTCCC-CCTCTACGTGCTGTC
65 -CCGGCA--GAGAGGCAGAATGCGCAAGCCGGGGATCCGATCCGGTCCCTCCT-TACGTGCTGTC
* *
16840795 GATCCCGATGCCACAACCCTCGGTCCGA-CTGGG
126 GATCCCGATACCACAACCCTCGGTCCGATCT-GA
* ** *
16840828 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC-CTCAA
16840893 CCGGCCAGAGAGGC-GAAATGCGCAAGCCGGGGAT
65 CCGG-CAGAGAGGCAG-AATGCGCAAGCCGGGGAT
16840927 AGGCCTAGTC
Statistics
Matches: 204, Mismatches: 42, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
158 8 0.04
159 188 0.92
160 7 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCAATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCCTCAAC
CGGCAGAGAGGCAGAATGCGCAAGCCGGGGATCCGATCCGGTCCCTCCTTACGTGCTGTCGATCC
CGATACCACAACCCTCGGTCCGATCTGA
Found at i:16841039 original size:26 final size:26
Alignment explanation
Indices: 16840980--16841029 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16840970 CCTCAATCTG
16840980 GTCTG-AT-CTTAGACTGGGAATGAA
1 GTCTGTATGCTTAGACTGGGAATGAA
16841004 GTCTGTATGCTTAGACAT-GGAATGAA
1 GTCTGTATGCTTAGAC-TGGGAATGAA
16841030 CTTCGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 15 0.65
27 1 0.04
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (26 bp):
GTCTGTATGCTTAGACTGGGAATGAA
Found at i:16841308 original size:196 final size:196
Alignment explanation
Indices: 16840966--16841319 Score: 492
Period size: 196 Copynumber: 1.8 Consensus size: 196
16840956 CTTGCTATCG
* * *
16840966 CAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACATGGAATGAAC
1 CAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * * **
16841031 TTCGTATGCCTAAGCCAACCTACGAAATGAGTGGGCAGGTGCTCAGCCGGTTGGAAAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAAGTGCTCAGCCGATCAGAAAGGCAGAAT
* *** * *
16841096 GCTTAAGTTGGGGATCAACTCGGTCCCCCCTGCGTGCTGCTGATCTTACTGCTGGTCCTGCTACC
131 GCGTAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGCTGATCTTACTGCTGGTCCTGCTACC
16841161 A
196 A
** *
16841162 CAACCCTCGGTCTGGTCTGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * *
16841227 TCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGTGCTCAGTCGATCAGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAAGTGCTCAGCCGATCAGAAAGGCAGAAT
16841292 GCGTAAGCCAGGGATCAACCCGATCCCC
131 GCGTAAGCCAGGGATCAACCCGATCCCC
16841320 ACTACCTGCT
Statistics
Matches: 134, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
196 134 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (196 bp):
CAACCCTCAATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCAAGTGCTCAGCCGATCAGAAAGGCAGAAT
GCGTAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGCTGATCTTACTGCTGGTCCTGCTACC
A
Found at i:16841713 original size:26 final size:26
Alignment explanation
Indices: 16841684--16841736 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16841674 CCGGTTCGAT
16841684 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16841710 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16841736 C
1 C
16841737 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16842705 original size:26 final size:26
Alignment explanation
Indices: 16842676--16842728 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16842666 CCGATCTAAT
16842676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16842702 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16842728 C
1 C
16842729 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16844912 original size:26 final size:26
Alignment explanation
Indices: 16844861--16844913 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16844851 GGCTCAAAAT
*
16844861 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16844887 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16844913 C
1 C
16844914 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16845395 original size:26 final size:26
Alignment explanation
Indices: 16845366--16845418 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845356 CCGGTCTGAT
16845366 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16845392 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16845418 C
1 C
16845419 CCAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16846765 original size:158 final size:158
Alignment explanation
Indices: 16846296--16846775 Score: 400
Period size: 158 Copynumber: 3.0 Consensus size: 158
16846286 ATGAATTACG
* * * * * *
16846296 TATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCA-ACCAGTCGGATAGGTAGAATACG
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACT-GGAGAGGTAAAATACG
* * **
16846360 CAAGTCGAGGA-CAGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCT
65 CAAGTCGGGGATC-GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCT
* ** * *
16846424 GATCCCATCTTAGATTGGGAATAAACTCTGC
129 GGTCTGATCTTAGACTGGGAATGAACTCT-C
* * ** * * ** * * * * * * *
16846455 T-TGCCTAAGTCAAGCCAAAAAATGAACGTGTAGGCGCTGAGTCGGCCGGAGTGGCATAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGTAAAATACGC
* * * * * * * * *
16846519 AAGTTGGGGATCGGCCCGATCCCCCTCTACATGCT-ACCAGTCCCGCTGCCACAACCCTCAGTCC
66 AAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA-TCCTGCTGCCACAACCCTCGGTCT
**
16846583 GGT-TGGGGCTTAGACAT-GGAATGAACTC-C
129 GGTCT-GATCTTAGAC-TGGGAATGAACTCTC
* * *
16846612 TTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTCGACTGGAGAGGTAAAATATG
1 -TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGTAAAATACG
* * *
16846677 TAAGTCGGGGATCGACCCGGTCGCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTG
65 CAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTG
16846742 GTCTGATCTTAGACTGGGAATGAACT-TC
130 GTCTGATCTTAGACTGGGAATGAACTCTC
16846770 GTATGC
1 -TATGC
16846776 TTAGACTAGG
Statistics
Matches: 236, Mismatches: 73, Indels: 25
0.71 0.22 0.07
Matches are distributed among these distances:
157 2 0.01
158 118 0.50
159 115 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGTAAAATACGC
AAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGG
TCTGATCTTAGACTGGGAATGAACTCTC
Found at i:16846800 original size:26 final size:26
Alignment explanation
Indices: 16846749--16846801 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16846739 CTGGTCTGAT
* *
16846749 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16846775 CTTAGACTAGGG-ATTAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
16846801 C
1 C
16846802 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16847850 original size:27 final size:27
Alignment explanation
Indices: 16847799--16847851 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
16847789 TGGTCCGATC
*
16847799 TTAGACTAGGAATGAACTCCGTATGCT
1 TTAGACTAGGAATGAACTCCATATGCT
*
16847826 TTAGAC-ATGGAATGAACTCTATATGC
1 TTAGACTA-GGAATGAACTCCATATGC
16847852 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (27 bp):
TTAGACTAGGAATGAACTCCATATGCT
Found at i:16848217 original size:159 final size:160
Alignment explanation
Indices: 16847984--16848435 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 160
16847974 CCGGTCCAAT
* * * * * ** *
16847984 CTTAGAC-TGGGAATGAACT-CTGTATGCGTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTAC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * *
16848047 GCCGATCGGAGAGGCATAATGAGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGA-GCTACCGA
64 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCATGCTACCGA
** *
16848111 TCCCGCTGCCACAACCCTTGGATC-GGCTGGGG
129 TCCCGCTGCCACAACCCTCAG-TCTGACTGGGG
* *
16848143 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * * ** * ** *
16848208 CGA-CTGGAGAGGCAAAATGCGTAAGTCGAGGATCAGTTCAG-TCCCCCTCT-TCATGCTGTCGG
66 CGATC-GGAGAGGCAAAATGCGCAAGCCGGGGATC-GACCCGATCCCCCTCTGTCATGCTACCGA
16848270 TCCCGCTGCCACAACCCTCAGTCTGACTGGGG
129 TCCCGCTGCCACAACCCTCAGTCTGACTGGGG
* * *
16848302 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCTAAGCCAACCCACGAAACGGGCGTACGGGCA
1 CTTAGACATGGAATGAA---C-TA--CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCA
* * * * *
16848367 CTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCTCTG-CGTGCTG
60 CTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCATGCTA
16848430 CCGATC
125 CCGATC
16848436 TTGCTATAGC
Statistics
Matches: 238, Mismatches: 40, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
158 5 0.02
159 136 0.57
160 5 0.02
162 1 0.00
163 2 0.01
164 20 0.08
165 68 0.29
166 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
CGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCATGCTACCGATC
CCGCTGCCACAACCCTCAGTCTGACTGGGG
Found at i:16848938 original size:157 final size:154
Alignment explanation
Indices: 16848652--16849172 Score: 471
Period size: 157 Copynumber: 3.3 Consensus size: 154
16848642 TCCTGCTGTC
* * * * *
16848652 GCAACCCTTGATCCAGTCTGATCATAGATTGGGAATGGACTCCATATGCCTAAGCCAACCCATGA
1 GCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * * * * * * * *
16848717 AATGAGCGTACGGGCGCTCAGTCGATCGGAGAGGTAGAATACGTAAGTCGGGGA-CCAGCTCGAT
66 AACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGA-CTCGAT
16848781 CCCACCCATCGTGCTGTCGATCCTACTT
130 CCC-CCC-T-GTGCTGTCGATCCTACTT
* *
16848809 GCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
1 GCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * *
16848874 AGCGAGCGTGTGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATC
66 AACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGATC
*
16848939 CCCCTCTGTGTGCTGTC-AGTCCCGCTAC-C
131 CCCC-C--TGTGCTGTCGA-T--C-CTACTT
* * * * ** * *
16848968 ACAACTCTC-AGT-TAGACTGGGGCTTAGACAT-GGAATGAACTCCCTCTGCCTAAGCCAACCCA
1 GCAACCCTCGA-TCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * * **
16849030 CAAAACGAGCGTGCGGGTGCTCAGCCGG-CCAGAGAGACAGAATGCGTATGCCAGGGATCGGTTC
63 CGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA-AGAGGCAGAATGCGTAAGCCAGGGATCGACTC
** *
16849094 GATCCCCCCTGTGCTACCGATCCTGCTAT
127 GATCCCCCCTGTGCTGTCGATCCTACT-T
* *
16849123 CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 -GCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
16849173 TTAGATAAGG
Statistics
Matches: 292, Mismatches: 54, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
153 3 0.01
154 1 0.00
155 1 0.00
156 43 0.15
157 123 0.42
158 10 0.03
159 106 0.36
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (154 bp):
GCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGTGCTCAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGATC
CCCCCTGTGCTGTCGATCCTACTT
Found at i:16851119 original size:26 final size:26
Alignment explanation
Indices: 16851083--16851135 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16851073 CCAGTTCAAT
*
16851083 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16851109 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16851135 C
1 C
16851136 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16851453 original size:185 final size:184
Alignment explanation
Indices: 16850924--16851479 Score: 545
Period size: 185 Copynumber: 3.0 Consensus size: 184
16850914 TCCGGCTAGG
* * * *
16850924 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT-GAAACGGGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACGAGCGTACGGGCGCTCA
* * ** * *
16850988 GTTGGCCGGAGAGGCAGAATGGGCAAGCCAGGGATTAGCCCGGTCCCCCCTGCA--TCCTGTCGA
65 GTTGGCCGGAGAGGTAGAATGCGCAAG-CAGGGATCGGCCCAGTCCCCCCT-CACGTGCTGTCGA
* * * * * **
16851051 TCCTGCTGCCCCAACCCTCAGTCCAGTTC-AATCTTAGACTGGGAATGAACTTTGTAT
128 TCCTGCTGCCACAACCCTTAGT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
16851108 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTACGGGCGCTCA
** * * * * * * *
16851172 GCCGGTCGGAGAGGTAGAATGTGCAAGCTGGGGATCGG-CCTGATCAACCCCT-GCGTGCT-ACT
65 GTTGGCCGGAGAGGTAGAATGCGCAAGC-AGGGATCGGCCCAG-TC-CCCCCTCACGTGCTGTC-
* ** * * * *
16851234 GATCCTGCTGTCGTAA-CCTTCAATCTGGTCTGATCTTAGATTGGGAATGATCTCCGTAT
126 GATCCTGCTGCCACAACCCTT-AGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
16851293 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTACGGGCGCTCAG
* * *
16851358 TTGGCCGGTGAGGTAGAATGCACAAGTCAGGGATCGGCCCAGTCCCCCCTCACGTGCTGTCAATC
66 TTGGCCGGAGAGGTAGAATGCGCAAG-CAGGGATCGGCCCAGTCCCCCCTCACGTGCTGTCGATC
* * *
16851423 TTGCTGCCACAACCCTTGGTCTGATCTGATCTTAGACTGGGAACGAACTCCGTAT
130 CTGCTGCCACAACCCTTAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
16851478 GC
1 GC
16851480 CTAAGTAAAC
Statistics
Matches: 295, Mismatches: 61, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
183 5 0.02
184 96 0.33
185 184 0.62
186 10 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTACGGGCGCTCAG
TTGGCCGGAGAGGTAGAATGCGCAAGCAGGGATCGGCCCAGTCCCCCCTCACGTGCTGTCGATCC
TGCTGCCACAACCCTTAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16851821 original size:26 final size:26
Alignment explanation
Indices: 16851770--16851822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16851760 CTGGTCTGAT
**
16851770 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16851796 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16851822 C
1 C
16851823 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16852753 original size:26 final size:26
Alignment explanation
Indices: 16852701--16852753 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16852691 CCGATCCAAT
* *
16852701 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGCATG
16852727 CTTAGACAT-GGAATGAACTCGGCATG
1 CTTAGAC-TGGGAATGAACTCGGCATG
16852753 C
1 C
16852754 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGCATG
Found at i:16853025 original size:159 final size:158
Alignment explanation
Indices: 16852851--16853229 Score: 379
Period size: 159 Copynumber: 2.4 Consensus size: 158
16852841 TGTATGCTGT
* *
16852851 CGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTGGACTGGGAATGAACTCTGTATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTA
* * ** * * * *
16852916 AGTCAACCAATGAAACGAGCGTTCGGGCGCTGAACCGATCGGAGAGGCATAATGCGCAAGCCGAG
66 AGCCAACCAACGAAACGAAAGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCCGAG
* * *
16852981 GATCGGCTCAGTCCCCCTCTACATGTTTC
131 GATCGGCCCAGTCCCCCT-TACATGCTAC
* * ** *
16853010 C-AGTCCCGCTGCCACAACCCTCCGTCCGG-CTGGGGCTTAGACAT-GGAATGAACT-TCCTATG
1 CGA-TCCCGCTGCCACAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCT-GTATG
* * * * *
16853071 CCTAAGCCAACCCACGAAACGAAAGTGCGGGCGCTCAGCCGGTCATAGAGGTAGAATGCGCAAGC
62 CCTAAGCCAACCAACGAAACGAAAGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGC
* * * * *
16853136 CGGGGATCGGCCCGGTCTCCCTTGCGTGCTAC
127 CGAGGATCGGCCCAGTCCCCCTTACATGCTAC
** * * * *
16853168 CGATCTTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CGATCCCGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
16853230 TTAGATTGGA
Statistics
Matches: 174, Mismatches: 38, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.01
158 54 0.31
159 118 0.68
160 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CGATCCCGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTA
AGCCAACCAACGAAACGAAAGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCCGAG
GATCGGCCCAGTCCCCCTTACATGCTAC
Found at i:16853872 original size:26 final size:26
Alignment explanation
Indices: 16853834--16853884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16853824 GGCTCAAAAT
16853834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16853860 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16853885 CCCCAATCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16854533 original size:25 final size:26
Alignment explanation
Indices: 16854487--16854536 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16854477 CTGGTTCGAT
*
16854487 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16854513 CTTAGACTGGG-ATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
16854537 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16855742 original size:26 final size:26
Alignment explanation
Indices: 16855706--16855758 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855696 TCAGTCTGAT
* * *
16855706 CTTAGATTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16855732 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16855758 C
1 C
16855759 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16856466 original size:26 final size:26
Alignment explanation
Indices: 16856428--16856478 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16856418 GGCTCAAAAT
16856428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16856454 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16856479 ACCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16857152 original size:26 final size:26
Alignment explanation
Indices: 16857101--16857153 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857091 CCGGTCTGAT
*
16857101 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTCTATG
16857127 CTTAGACAT-GGAATGAACTGC-CTATG
1 CTTAGAC-TGGGAATGAACT-CTCTATG
16857153 C
1 C
16857154 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:16858363 original size:159 final size:158
Alignment explanation
Indices: 16858060--16858527 Score: 485
Period size: 159 Copynumber: 2.9 Consensus size: 158
16858050 AACTCCACAT
*
16858060 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
16858125 -TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCCTGTGTGCTATCAAT
66 CT-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGT-CCCCCCTGCGTGCTATCAAT
** ** **
16858189 CCTGCTGTCGTAACCCTC-AGTCTGGTCT-AA
129 CCCACTACCACAACCCTCGA-TCTGG-CTGAA
* * * * * *
16858219 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * **
16858283 GCTGGCCGAAGAGGCATAATGTGCAAGCCGGGGATTGGCTCAGTCCACCCCTGCATGCTGTCTGT
65 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCC-CCCCTGCGTGCTATCAAT
* **
16858348 CCCACTACCACAACCCTCGATTTGGCTGGG
129 CCCACTACCACAACCCTCGATCTGGCTGAA
* *
16858378 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16858443 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCAATCC
** * *
16858508 TGCTGCCATAACCCTCGATC
131 CACTACCACAACCCTCGATC
16858528 CAATTCGATC
Statistics
Matches: 246, Mismatches: 57, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
158 35 0.14
159 208 0.85
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCAATCC
CACTACCACAACCCTCGATCTGGCTGAA
Found at i:16859037 original size:355 final size:355
Alignment explanation
Indices: 16858373--16859047 Score: 917
Period size: 355 Copynumber: 1.9 Consensus size: 355
16858363 CTCGATTTGG
** *
16858373 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG
1 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCG
*
16858438 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACC
66 CTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACC
* * * * *
16858503 GATCCTGCTGCCATAACCCTCGATCCAATTCGATCTTAGACTATGAACGAACTCCGTATGCTTAG
131 GATCCTGCTACCAGAACCCTCGATCCAATCCGATCTTAGACTAGGAACGAACTCCGTATGCTCAG
* * * ***
16858568 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGTTGCTCAGCCGGTC
196 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTC
** * * * * * * *
16858633 AGAGAGGCTTAATTCGTAAGCCGGGGATCAACCCGGTCTCTCTCTGCATGCTGTCGATCCCTCTG
261 AGAGAGGCAGAATACGCAAGCCGAGGACCAACCCGATCTCCCCCTGCATGCTGTCGATCCCTCTG
16858698 CTAGTCTTGCTACCACAACCATCTGTCCGA
326 CTAGTCTTGCTACCACAACCATCTGTCCGA
* *
16858728 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGAGCGGGCG
1 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCG
* * *
16858793 CTTAGCCAACCGGAGAGGCAGAATGCGCAAGTCGAGGATCG-GCCAGATCCCCCCTGCGTGC-AG
66 CTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAG-TCCCCCCTGCGTGCTA-
* ** * ** * *
16858856 TCGATCCTGCTACTGGAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTC
129 CCGATCCTGCTACCAGAACCCTCGATCCAATCCGATCTTAGACTAGGAACGAACTCCGTATGCTC
* *
16858921 AGACCT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTG
194 AGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* *
16858985 GTCGGAGAGGCAGAATACGCAAGCCCGAGGACCGACCCGATC-CCCCCTGCATGCTGTCGATCC
258 GTCAGAGAGGCAGAATACGCAAG-CCGAGGACCAACCCGATCTCCCCCTGCATGCTGTCGATCC
16859048 TACTGTCGCA
Statistics
Matches: 275, Mismatches: 41, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
354 5 0.02
355 254 0.92
356 16 0.06
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (355 bp):
CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGAGCGGGCG
CTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACC
GATCCTGCTACCAGAACCCTCGATCCAATCCGATCTTAGACTAGGAACGAACTCCGTATGCTCAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTC
AGAGAGGCAGAATACGCAAGCCGAGGACCAACCCGATCTCCCCCTGCATGCTGTCGATCCCTCTG
CTAGTCTTGCTACCACAACCATCTGTCCGA
Found at i:16860705 original size:171 final size:171
Alignment explanation
Indices: 16860306--16860713 Score: 376
Period size: 171 Copynumber: 2.4 Consensus size: 171
16860296 ACCCAATGTA
** * * *
16860306 CTGCCGATCCTACTACCACAACCTTCGGTCTAGTCTGATCTTATACTGGGAATGAACTCCGTATG
1 CTGCCGATCCGGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
16860371 CCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTCAGCCGGCCGAAGAGGCATAATGCGCAAGT
66 CCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGC
* * * *
16860436 CGGGGATCAGCCTGATCCCCCTCTACATGTTGCCAATCACG
131 CAGGGATCAGACTGATCCCCCTCTACATGCTACCAATCACG
* * * ** * *
16860477 CTGCCGATCCTGCTGCCACAACCCTCGGT-TCGACTGGGGCTTCGACAT-GGTATGAACTCCGTA
1 CTGCCGATCCGGCTGCCACAACCCTCGGTCTAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTA
* * ** * *
16860540 TGCCTAAGCCAACCCGCAAAATGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGTAA
64 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAA
* * * *
16860605 GCCAGGGATC-GACTCGGTCCCCC-CTTGCGTGCTACCGATC-CTG
129 GCCAGGGATCAGACT-GATCCCCCTC-TACATGCTACCAATCAC-G
** * * ** *
16860648 CTGTTGGTTCGGCTGCTGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATG
1 CTGCCGATCCGGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
16860713 C
66 C
16860714 TTAGACATGG
Statistics
Matches: 185, Mismatches: 45, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
170 10 0.05
171 170 0.92
172 5 0.03
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (171 bp):
CTGCCGATCCGGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGC
CAGGGATCAGACTGATCCCCCTCTACATGCTACCAATCACG
Found at i:16860737 original size:26 final size:26
Alignment explanation
Indices: 16860679--16860739 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
16860669 CCCTCGGTCT
16860679 AGTCTG-AT-CTTAGACTGGGAATGA
1 AGTCTGTATGCTTAGACTGGGAATGA
*
16860703 ACT-TCGTATGCTTAGACAT-GGAATGA
1 AGTCT-GTATGCTTAGAC-TGGGAATGA
16860729 AGTCTGTATGC
1 AGTCTGTATGC
16860740 CAAAGCCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 2 0.07
26 22 0.73
27 2 0.07
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (26 bp):
AGTCTGTATGCTTAGACTGGGAATGA
Found at i:16861229 original size:26 final size:26
Alignment explanation
Indices: 16861188--16861240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861178 CCGATCCGAT
16861188 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16861214 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16861240 C
1 C
16861241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16862239 original size:26 final size:26
Alignment explanation
Indices: 16862201--16862253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16862191 TTGGTTTGAT
16862201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16862227 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16862253 C
1 C
16862254 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16863254 original size:26 final size:26
Alignment explanation
Indices: 16863225--16863277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16863215 CCGATCCGAT
16863225 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16863251 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16863277 C
1 C
16863278 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16865689 original size:26 final size:26
Alignment explanation
Indices: 16865638--16865690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16865628 CCGGTCCGAT
**
16865638 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16865664 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16865690 C
1 C
16865691 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16865807 original size:184 final size:184
Alignment explanation
Indices: 16865479--16865848 Score: 413
Period size: 184 Copynumber: 2.0 Consensus size: 184
16865469 TCCGGCTAGG
** * * *
16865479 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGGGCGTGCGAGCGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * *
16865544 CCAGCCGGAGAGGAAAAATGCGTAAGCTGTGGATTGGCCTGATCCCCCCTGCATGCTGCCAATCC
66 CCAGCCGGAGAGGAAAAATGCGTAAGCCGAGGATTGGCCTGATCCCCCCTACATGCTGCCAATCC
* * * * * * *
16865609 TGTTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCTGTAT
131 TGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTTC-GTAT
* *
16865663 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * * * ** * ***
16865728 TCGGTCGGAGGGGCAGAATGCGTAAGCCGAGGA-TGAG-CTCGGTCCCCCCTATGTGTTGTTGAT
66 CCAGCCGGAGAGGAAAAATGCGTAAGCCGAGGATTG-GCCT-GATCCCCCCTACATGCTGCCAAT
*
16865791 CCTGCTACTACAACCCTCAGACTGGTCCAATCTTAGACTGGGAATAAACTTCGTAT
129 CCTGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTTCGTAT
16865847 GC
1 GC
16865849 CTAAGTCAAC
Statistics
Matches: 152, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
183 4 0.03
184 146 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCAGCCGGAGAGGAAAAATGCGTAAGCCGAGGATTGGCCTGATCCCCCCTACATGCTGCCAATCC
TGCTACTACAACCCTCAGACCGGTCCAATCTTAGACTGGGAATAAACTTCGTAT
Found at i:16866168 original size:26 final size:26
Alignment explanation
Indices: 16866139--16866191 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16866129 CCAGTTTGAT
16866139 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16866165 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16866191 C
1 C
16866192 CTGAAGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16871598 original size:26 final size:27
Alignment explanation
Indices: 16871555--16871610 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
16871545 CTCAAAATCA
16871555 TAGACTGGGAATGAACTTCGTATG-CT
1 TAGACTGGGAATGAACTTCGTATGCCT
* * *
16871581 TAGATTGGGGATGCACTTCGTATGCCT
1 TAGACTGGGAATGAACTTCGTATGCCT
16871608 TAG
1 TAG
16871611 TCAACCCACG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (27 bp):
TAGACTGGGAATGAACTTCGTATGCCT
Found at i:16871960 original size:26 final size:26
Alignment explanation
Indices: 16871923--16871975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16871913 CTGGTCCGAT
* *
16871923 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16871949 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16871975 C
1 C
16871976 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16872303 original size:159 final size:158
Alignment explanation
Indices: 16871948--16872368 Score: 461
Period size: 159 Copynumber: 2.7 Consensus size: 158
16871938 AACTTCGTAT
* * *
16871948 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAATGAACGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* ** * *
16872013 CCGGCCTTAGAGGCAGAATGCGCTAGCCGGGGATCGGCCCGATCACCCATGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCATGCATGCTGTCGATCC
* ** * *
16872078 TACGACTGCAACCCTCAGTCTGGTCCGA
131 CACGACCACAACCCTCAGTCCGGTCAGA
* * * * *
16872106 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
* * * * *
16872170 GCCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCC-ATGCATGCTGTCGAT
* *
16872235 CCCACTG-CCACAACCCTCGGTCCGG-CTAGG
129 CCCAC-GACCACAACCCTCAGTCCGGTC-AGA
* * * * *
16872265 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
* * * * * *
16872330 TCGATCGGAGAGGCAGAATGCACAAGCCGAGGATTGGCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
16872369 TAGTCCCTCC
Statistics
Matches: 215, Mismatches: 43, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 96 0.45
159 116 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCATGCATGCTGTCGATCC
CACGACCACAACCCTCAGTCCGGTCAGA
Found at i:16879110 original size:26 final size:26
Alignment explanation
Indices: 16879072--16879124 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879062 GGCTCAAAAT
16879072 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16879098 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16879124 C
1 C
16879125 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16879399 original size:159 final size:156
Alignment explanation
Indices: 16879098--16879598 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 156
16879088 ACTCCGTATG
* * *
16879098 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATG-CTAAG-CAACCCATGAAACAAGAGTGCGGGCGTTCAGT
* * ** **
16879163 CGGCCAGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCAATCCCTCCCTGCGTGCTGTCGATCC
64 CGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTGCGTGCTGTCGATCC
* *
16879228 TACTACCGCAACCCTTGGTCTGGTCCGAT
128 TACTGCCACAACCCTTGGTCTGGTCCGAT
* * *
16879257 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCAATGAAACAAGTGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGC-TAAG-CAACCCATGAAACAAGAGTGCGGGCGTTCAG
* * * * * * *
16879321 CCAGTCGAAGAGGTATAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGCCGGTC
63 TC-GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTGCGTGCTGTCGATC
* ** * **
16879386 CTGCTGCCACAACCCTCAGTCTGG-CTGGGG
127 CTACTGCCACAACCCTTGGTCTGGTC-CGAT
* * * *
16879416 CTTAGACATGGAATGAACTCCCTATG--AAGCGAACCCATGAAA-AGGGCGTGTGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCTAAGC-AACCCATGAAACA-AGAGTGCGGGCGTTCAGT
* * * *
16879478 CGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCC-CCCCGCGT-CTTGTCGATC
64 CG-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTGCGTGC-TGTCGATC
* *
16879541 CTACTGCCACAA-CCTTCGATCTGATCCGAT
127 CTACTGCCACAACCCTT-GGTCTGGTCCGAT
*
16879571 CTTAGAC-TGGGAATGAACTCCATATGCT
1 CTTAGACAT-GGAATGAACTCCGTATGCT
16879599 TAGACTGGGG
Statistics
Matches: 274, Mismatches: 54, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
154 5 0.02
155 54 0.20
156 64 0.23
158 3 0.01
159 144 0.53
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCTAAGCAACCCATGAAACAAGAGTGCGGGCGTTCAGTCG
TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCCTGCGTGCTGTCGATCCTAC
TGCCACAACCCTTGGTCTGGTCCGAT
Found at i:16879607 original size:26 final size:26
Alignment explanation
Indices: 16879571--16879623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879561 CTGATCCGAT
16879571 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16879597 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16879623 C
1 C
16879624 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16879980 original size:26 final size:26
Alignment explanation
Indices: 16879951--16880002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879941 CCGGTTCGAT
*
16879951 CTTAGAC-TGGGAGTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16879977 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16880003 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16881438 original size:159 final size:157
Alignment explanation
Indices: 16881182--16881684 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 157
16881172 AACCCGCATC
* * * * *
16881182 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACCAGTGTACGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGTTCAGC
* *
16881247 CGACCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCTCCGTGTGTGCTGTCCATCC
66 CGACCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGCCCGGTCCC-CC-TGCGTGCTGTCCATCC
* * *
16881312 TGCTGTCGCAACCCTCCGTCCGGTCCGAT
129 TGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * * *
16881341 CTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGTTCAG
* * * ** *
16881405 CCGACCGAAGAGGCATAATGTGCAGGCTGGGGATCGATCCGGTCCCACTCTCCGTGCTG-CCGAT
65 CCGACCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGCCCGGTCCC-C-CTGCGTGCTGTCC-AT
* * * * * **
16881469 CTTGCTGCCACAGCCCTCGGTCTGG-CTGGGG
127 CCTGCTGCCGCAACCCTCAGTCTGGTC-CGAT
* * * * * *
16881500 CTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCACGAAACGGGTGCGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGTTCAGC
* * * *
16881565 CGGCCGGAGAGGCAGAATGTGCAAG-TCGGGGATCGGCCAGGTCCCCCCTGCGTGCTGTCGATCC
66 CGACCGGAGAGGCAAAATGTGCAAGCT-GGGGATCGGCCCGGT-CCCCCTGCGTGCTGTCCATCC
* * *
16881629 TACTGCCGTAACCCTCAGTCTGATCCGAT
129 TGCTGCCGCAACCCTCAGTCTGGTCCGAT
*
16881658 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16881685 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 208 0.76
160 6 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGTTCAGC
CGACCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCCATCCTG
CTGCCGCAACCCTCAGTCTGGTCCGAT
Found at i:16881823 original size:343 final size:343
Alignment explanation
Indices: 16881341--16882027 Score: 855
Period size: 343 Copynumber: 2.0 Consensus size: 343
16881331 CCGGTCCGAT
* * *
16881341 CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGC
1 CTTAGACTGAGAATGAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
* ** * * * *
16881406 CGACCGAAGAGGCATAATGTGCAGGCTGGGGATCGATCCGGTCCCACTCTCCGTGCTGCCGATCT
66 CGACCGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCACTCTACGTGCTGCCGATCC
* * * *
16881471 TGCTGCCACAGCCCTCG-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCA
131 CGCTGCCACAACCCTCGATTC-GACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCA
* ** * * *
16881535 ACCCACGAAACGGG-TGCGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGTGCAAG-TCGGGGAT
195 ACCCACAAAACGGGCT-CGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGAC
* * * *
16881598 CGGCCAGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCTGATCCGATCTTAG
258 CGGCCAGATCCCCCCTGCGTGCTATCGATCCTACTGCCGTAACCCTCAGTCCGATCCAATCTTAG
16881663 ACTGGGAATGAACTCCATATG
323 ACTGGGAATGAACTCCATATG
* * * *
16881684 CTTAGACTGGGGATGAACTTCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCTT-AG
1 CTTAGACTGAGAATGAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGCGGGCG-TTGAG
** * * *
16881748 CCGGTCGGAGAGGTAGAATGCATAAGCTGGGGATC-AGCCCGGTCCC-CTTCTACGTGCTGCCGA
65 CCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCGA-CCCGGTCCCAC-TCTACGTGCTGCCGA
*
16881811 TCCCGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
128 TCCCGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGC
* * * *
16881876 CAACCCATAAAATGGGCTTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGAC
193 CAACCCACAAAACGGGCTCGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGAC
* * * * * * **
16881941 CGGCCTGATCCCCCCTGCGTGCTATCGGTCTTGCTGCCGTAACCCTCGGTCCGGTTTAATCTTAG
258 CGGCCAGATCCCCCCTGCGTGCTATCGATCCTACTGCCGTAACCCTCAGTCCGATCCAATCTTAG
*
16882006 ACTGGGAATGAACTCCGTATG
323 ACTGGGAATGAACTCCATATG
16882027 C
1 C
16882028 ATAAATCAAC
Statistics
Matches: 291, Mismatches: 47, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
342 2 0.01
343 283 0.97
344 6 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (343 bp):
CTTAGACTGAGAATGAACTCCGTATGCAGAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
CGACCGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCACTCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAA
CCCACAAAACGGGCTCGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGG
CCAGATCCCCCCTGCGTGCTATCGATCCTACTGCCGTAACCCTCAGTCCGATCCAATCTTAGACT
GGGAATGAACTCCATATG
Found at i:16881939 original size:159 final size:157
Alignment explanation
Indices: 16881735--16882250 Score: 464
Period size: 159 Copynumber: 3.3 Consensus size: 157
16881725 GAAACGAGCG
* ** * ** *
16881735 TGCGGGCGCTTAGCCGGTCGGAGAGGTAGAATGCATAAGCTGGGGATCAGCCCGGTCCCCTTCTA
1 TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCC-TCTG
* * * *
16881800 CGTGCTGCCGATCCCGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCC
65 CGTGCTGCCGGTCCAGCTGCCACAACCCTCG-TTCGGCTAGGGCTTAGACATGGAATGAACTCCC
*
16881865 TATGCCTAAGCCAACCCATAAAATGGGCT
129 TATGCCTAAGCCAACCCATAAAATGGGCA
* * * * * *
16881894 TGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCTGATCCCCCCTGC
1 TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCTCTGC
** ** ** * * **
16881959 GTGCTATCGGTCTTGCTGCCGTAACCCTCGGTCCGGTTTA-ATCTTAGAC-TGGGAATGAACTCC
66 GTGCTGCCGGTCCAGCTGCCACAACCCTC-GTTCGG-CTAGGGCTTAGACAT-GGAATGAACTCC
* * ** * *
16882022 GTATGCATAAATCAACCCATAAAATGAGCG
128 CTATGCCTAAGCCAACCCATAAAATGGGCA
* * * * * * *
16882052 TGCGGGTGCTGAACCGGCCGAAGAGGCATAATGTGCAAG-TCGGGGATCAGCCCGGTCCCCCTCT
1 TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGGT-CCCCTCT
* * * * *
16882116 GCGTGCTGCTGGTCCAGCTACCACAGCCCTCGGTCTGGCTAGGGCTGAGACATGGAATGAACTCC
64 GCGTGCTGCCGGTCCAGCTGCCACAACCCTCGTTC-GGCTAGGGCTTAGACATGGAATGAACTCC
* **
16882181 CTATGCCTAAGCCAACCCATGAAACAGGCA
128 CTATGCCTAAGCCAACCCATAAAATGGGCA
* *
16882211 TGCGGGTGCTCAGCC-AGCAGGAGAGGCAGAATGCGCAAGC
1 TGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGC
16882251 CGATCCTGTT
Statistics
Matches: 271, Mismatches: 76, Indels: 19
0.74 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 117 0.43
159 151 0.56
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
TGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCTCTGC
GTGCTGCCGGTCCAGCTGCCACAACCCTCGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCATAAAATGGGCA
Done.