Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 115 of 138
Found at i:16882690 original size:26 final size:26
Alignment explanation
Indices: 16882661--16882713 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16882651 CCGGTCTAAT
*
16882661 CTTAGAC-TGGGAACGAACTCCGTATG
1 CTTAGACAT-GGAACGAACTCCATATG
*
16882687 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAACGAACTCCATATG
16882713 C
1 C
16882714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCATATG
Found at i:16882985 original size:159 final size:160
Alignment explanation
Indices: 16882687--16883186 Score: 375
Period size: 159 Copynumber: 3.1 Consensus size: 160
16882677 ACTCCGTATG
**
16882687 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCCTGCGTGCGGGTGCT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA--C-GCGTGCGGGCACT
* * * * *
16882752 CAGCTGGCCGAAGAGGTAGAATGCACAAGCTAGGGATCGACGCGGTCCCCACCTACATGCTATCG
63 CAGCTGGCCGAAGAGGCAGAATACACAAGCCAAGGATCGACCCGGTCCCCACCTACATGCTATCG
** *
16882817 ATCTTGCTGCCGCAACCCTCAGTTTGGTCCGAT
128 ATCCCGCTGCCACAACCCTCAGTTTGGTCCGAT
* * * *
16882850 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA-GCGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGCGTGCGGGCACTCA
* * * * * * * *
16882913 GTTGGCCGGAGAGGCATAATACGCAAGCCAAGGATCGACCCGGTCCACC-TCTGCATGCTGTCGG
65 GCTGGCCGAAGAGGCAGAATACACAAGCCAAGGATCGACCCGGTCC-CCACCTACATGCTATCGA
** * * * * **
16882977 TCCCGCTGCCACAACCAACGGTCTAG-CTAGGG
129 TCCCGCTGCCACAACCCTCAGTTTGGTC-CGAT
* * * * **
16883009 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGCATGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGCGTGCGGGCACTCAG
* * * ** * ** * * * * *
16883073 CCGACC-AGAGAGGTAGAATTTACAAGTCGGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGAT
66 CTGGCCGA-AGAGGCAGAATACACAAGCCAAGGATCGACCCGGTCCCCACCTACATGCTATCGAT
* ** * ***
16883136 CCTGCTGCGGCCACCCTCAGTCCAGTCCGAT
130 CCCGCTGCCACAACCCTCAGTTTGGTCCGAT
*
16883167 CTTAGACAAGGAATGAACTC
1 CTTAGACATGGAATGAACTC
16883187 TGTATGCTTA
Statistics
Matches: 263, Mismatches: 67, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
158 53 0.20
159 163 0.62
160 3 0.01
162 1 0.00
163 43 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGACGCGTGCGGGCACTCAG
CTGGCCGAAGAGGCAGAATACACAAGCCAAGGATCGACCCGGTCCCCACCTACATGCTATCGATC
CCGCTGCCACAACCCTCAGTTTGGTCCGAT
Found at i:16884707 original size:26 final size:26
Alignment explanation
Indices: 16884669--16884721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16884659 CTGGTCTGAT
*
16884669 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16884695 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16884721 C
1 C
16884722 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16887316 original size:328 final size:329
Alignment explanation
Indices: 16886704--16887319 Score: 844
Period size: 329 Copynumber: 1.9 Consensus size: 329
16886694 GTGTTGTCGA
* * *
16886704 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
16886769 GAACCCACGAAACGGGCGTGTGGGTGCTCAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGAC
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGGGAC
* * ** *
16886834 CGACCCGATCCCCCTTGTGTGCTATCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAG
131 CGACCCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGATCTGATCTTAG
* * *
16886899 ACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGAGCACTGAGCCGGTC
196 ACTAGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGAGCACTGAGCCGATC
** *
16886964 GGAGAGGCATAATGTGCAAGCCGAGGATTAACCTGGTCCCCCTCTACGTGCTACCGATCCCGCTG
261 AAAGAGGCATAATGCGCAAGCCGAGGATTAACCTGGTCCCCCTCTACGTGCTACCGATCCCGCTG
16887029 CGGG
326 CGGG
* *
16887033 TCCTGCTACCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 TCCTGCTACCACAACCCTCGGTCCGGTC-CGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* **
16887096 GCCAACCTACGAAACGAGCGTGCGGGCGCTCAACCGGGCAAAGAGGCAGAATGCACAAGCCAGGG
64 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGGG
* * * * *
16887161 ATCGGCTCGATCCCCCTTG-GTGCTGTCGATCCTACTACCGCAACCCTCAATCTGATCTGATCTT
129 ACCGACCCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGATCTGATCTT
* * * **
16887225 AGACTAGGAATGAACTCCGTAT-CCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCG
194 AGACTAGGAATGAACTCCGTATGCC-TAAGTCAACACACGAAACGAGCGTGCGAGCACTGAGCCG
16887289 ATCAAAGAGGCATAATGCGCAAGCCGAGGAT
258 ATCAAAGAGGCATAATGCGCAAGCCGAGGAT
16887320 CAGCTCGATC
Statistics
Matches: 247, Mismatches: 37, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
327 2 0.01
328 120 0.49
329 124 0.50
330 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (329 bp):
TCCTGCTACCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGGGAC
CGACCCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGATCTGATCTTAG
ACTAGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGAGCACTGAGCCGATC
AAAGAGGCATAATGCGCAAGCCGAGGATTAACCTGGTCCCCCTCTACGTGCTACCGATCCCGCTG
CGGG
Found at i:16887334 original size:328 final size:316
Alignment explanation
Indices: 16886577--16887407 Score: 886
Period size: 328 Copynumber: 2.6 Consensus size: 316
16886567 ACTCCATATG
* * * *
16886577 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * *
16886642 CGATCGAAGAGGCATAATGTGCAAG-CTAGGAAGCAGCCCGATCCCTCC-CTGCGTGTTGTCGAT
66 CGATCGAAGAGGCATAATGTGCAAGCCGAGG-ATCAG-CCGATCCC-CCTCTACGTGTTGTCGAT
* * * *
16886705 CCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCG
128 CCTGCTACCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
16886770 AACCCACGAAACGGGCGTGTGGGTGCTCAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGACC
193 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGGGACC
* * ** *
16886835 GACCCGATCCCCCTTGTGTGCTATCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGAT
258 GACCCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGATCTGAT
* * * * *
16886894 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGTGTGCGAGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * *
16886959 CGGTCGGAGAGGCATAATGTGCAAGCCGAGGATTAACCTGGTCCCCCTCTACGTGCTACCGATCC
66 CGATCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCC-GATCCCCCTCTACGTG-T-----T--
* * *
16887024 CGCTGCGGGTCCTGCTACCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCG
122 -G-T-C-GATCCTGCTACCACAACCCTCGGTCCGGTC-CGAGCTTAGAC-TGGGAATGAACTCCG
* **
16887087 TATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAACCGGGCAAAGAGGCAGAATGCAC
181 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCAC
* * * * *
16887152 AAGCCAGGGATCGGCTCGATCCCCCTTG-GTGCTGTCGATCCTACTACCGCAACCCTCAATCTGA
246 AAGCCAGGGACCGACCCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGA
16887216 TCTGAT
311 TCTGAT
* *
16887222 CTTAGACTAGGAATGAACTCCGTAT-CCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * ** * * *
16887286 CCGATCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTGTGCTGACGGT-
65 CCGATCGAAGAGGCATAATGTGCAAGCCGAGGATCAGC-CGATCCCCCTCTACGTGTTGTCGATC
** * * *
16887350 CTGGCTGTCACAACCCTCGATCCGGTCCTG-TCTTAGACTGGGAATGAACTCTGTATGC
129 CT-GCTACCACAACCCTCGGTCCGGTCC-GAGCTTAGACTGGGAATGAACTCCGTATGC
16887408 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 68, Indels: 47
0.79 0.13 0.09
Matches are distributed among these distances:
315 3 0.01
316 50 0.12
317 95 0.22
318 5 0.01
319 1 0.00
322 1 0.00
323 1 0.00
326 1 0.00
327 3 0.01
328 136 0.32
329 126 0.30
330 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CGATCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCCGATCCCCCTCTACGTGTTGTCGATCCT
GCTACCACAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGGGACCGAC
CCGATCCCCCTTGTGTGCTATCGATCCTACTACCGCAACCCTCAATCCGATCTGAT
Found at i:16887433 original size:26 final size:26
Alignment explanation
Indices: 16887381--16887433 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16887371 CCGGTCCTGT
***
16887381 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCACATG
*
16887407 CTTAGACTGGGGATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
16887433 C
1 C
16887434 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16887837 original size:26 final size:26
Alignment explanation
Indices: 16887799--16887851 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16887789 GGCTCAAAAT
16887799 CTTAGACTAGGAATGAACTCC-GTATG
1 CTTAGACTAGGAATGAAC-CCTGTATG
16887825 CTTAGAC-ATGGAATGAACCCTGTATG
1 CTTAGACTA-GGAATGAACCCTGTATG
16887851 C
1 C
16887852 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCTGTATG
Found at i:16888012 original size:26 final size:26
Alignment explanation
Indices: 16887983--16888035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16887973 CCGGTCCGAT
*
16887983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16888009 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16888035 C
1 C
16888036 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16888389 original size:58 final size:57
Alignment explanation
Indices: 16888275--16888391 Score: 128
Period size: 58 Copynumber: 2.0 Consensus size: 57
16888265 CAAGTCAGGA
* * * * *
16888275 TCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTACCATAACCC
1 TCGGCCCGATCCCCCTACGTGCTGTCGATCCCACTGCTGGTCCTACTACCACAACCC
* * * *
16888332 TCGGCCCGATCCCCCCTACGTGCT-TCTGATCCCGCTGTTGGTCCTACTGCCGCAACCC
1 TCGGCCCGAT-CCCCCTACGTGCTGTC-GATCCCACTGCTGGTCCTACTACCACAACCC
16888390 TC
1 TC
16888392 AGTCTGATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
57 11 0.22
58 38 0.78
ACGTcount: A:0.10, C:0.44, G:0.21, T:0.25
Consensus pattern (57 bp):
TCGGCCCGATCCCCCTACGTGCTGTCGATCCCACTGCTGGTCCTACTACCACAACCC
Found at i:16888430 original size:26 final size:26
Alignment explanation
Indices: 16888401--16888452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16888391 CAGTCTGATT
*
16888401 TTAGAC-TGGGAATGAACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
16888427 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
16888453 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:16893943 original size:11 final size:11
Alignment explanation
Indices: 16893927--16893959 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16893917 CGGTTACGCT
*
16893927 CTCCGGCGATG
1 CTCCGGTGATG
16893938 CTCCGGTGATG
1 CTCCGGTGATG
16893949 CTCCGGTGATG
1 CTCCGGTGATG
16893960 GTGCCCCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.36, T:0.24
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:16894357 original size:159 final size:156
Alignment explanation
Indices: 16894194--16894557 Score: 335
Period size: 159 Copynumber: 2.3 Consensus size: 156
16894184 CTGCTACCGT
* *
16894194 AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCATGAAA
1 AACCCTCGGTCC-GTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAA
* * * *
16894259 C-GAGCATGCGGGCGCTGAGCCAACCGAAGAGGCATAATGAGCAAG-TCGAGGATCGGCTCGGTA
65 CAG-GCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGAGCAAGCT-GAGGATCGACCCGG--
* *
16894322 ACCCT-CTAC-GTGCTACCGGTCCCTT-TGCCAC
126 ACCCTAAT-CTGTGCTACCGAT--CTTCTGCCAC
* * ** * * * *
16894353 AACCCTCGGTTCGACTGGGGCTTAGAC-ATTGAATGAACTCCTTATGCCTATGCCAACCCACGAA
1 AACCCTCGGTCCGTCT-GATCTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCACGAA
* * * * *
16894417 ACAGGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGACC
64 ACAGGCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGAGCAAGCTGAGGATCGACCCGGACC
** **
16894482 CTAATCTGTGCTGTCGATCTTGCTGCGGC
129 CTAATCTGTGCTACCGATCTT-CTGCCAC
* *
16894511 AACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
1 AACCCTCGGTCC-GTCTGATCTTAGACTAGGAATGAACTCCATATGC
16894558 TTAGACTGGG
Statistics
Matches: 163, Mismatches: 32, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
156 3 0.02
157 6 0.04
158 52 0.32
159 100 0.61
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
AACCCTCGGTCCGTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAAC
AGGCATGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGAGCAAGCTGAGGATCGACCCGGACCCT
AATCTGTGCTACCGATCTTCTGCCAC
Found at i:16894560 original size:26 final size:26
Alignment explanation
Indices: 16894531--16894583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16894521 CCAGTCCGAT
16894531 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16894557 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16894583 C
1 C
16894584 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16894700 original size:184 final size:182
Alignment explanation
Indices: 16894372--16894925 Score: 503
Period size: 184 Copynumber: 3.0 Consensus size: 182
16894362 TTCGACTGGG
* * * * * *
16894372 GCTTAGACATTGAATGAACTCCTTATGCCTATGCCAACCCACGAAACAGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
* * * * * * * *
16894437 CCAGCCGGAGAGGCAGAATGCGCAAG-CTGAGGATCGACCCGGA---CCCTAATCTGTGCTGTCG
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAG-GGATCGA-TC-GATCCCCCCAAGC-ATGCTGTCA
* * **
16894498 ATCTTGCTGCGGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
127 ATCCTACTGCTACAACCCTCGGTCC-GTCCGATCTTAGACT-GGAATGAACTCCGTAT
* * * * * *
16894556 GCTTAGAC-TGGGGATGAACTTCGTATGCCTATGTCAACCCATGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCA
* * * * **
16894620 GTCTGCC-GAGAGGCAGAATGCGCAAGCCAGGGATCCGATCGGTCCCCCCCGGCATGCTGTCAAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGAT-CGATCGATCCCCCCAAGCATGCTGTCAAT
* *
16894684 CC-AGCTG-TCACAACCCTCGGTCCGGTTCGATCTTAGACTGCGAATGAACTCCATAT
129 CCTA-CTGCT-ACAACCCTCGGTCC-GTCCGATCTTAGACTG-GAATGAACTCCGTAT
* ** *
16894740 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
* * * * * * *
16894805 CCGGCCGGAGAGGTAGAATGCACAAGTCGGGGATGGCTCGATCCCCCCAAGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGATCGATCCCCCCAAGCATGCTGTCAATCC
* * * *
16894870 TACTGCTGCAACCCTTGGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGCTACAACCCTCGGTCCG-TCCGATCTTAGACT-GGAATGAACTCCGTAT
16894924 GC
1 GC
16894926 CTAAGTCAAC
Statistics
Matches: 300, Mismatches: 55, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
182 1 0.00
183 27 0.09
184 241 0.80
185 31 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGATCGATCCCCCCAAGCATGCTGTCAATCC
TACTGCTACAACCCTCGGTCCGTCCGATCTTAGACTGGAATGAACTCCGTAT
Found at i:16895264 original size:25 final size:26
Alignment explanation
Indices: 16895221--16895275 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
16895211 CCGGTCCGAT
*
16895221 CTTAGACTAGGAATGAACTC-GTATG
1 CTTAGACTAGGAATAAACTCTGTATG
* *
16895246 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
16895272 CTTA
1 CTTA
16895276 TGTTAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:16896324 original size:26 final size:26
Alignment explanation
Indices: 16896283--16896335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16896273 CCGATCCGAT
16896283 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16896309 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
16896335 C
1 C
16896336 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16897044 original size:26 final size:26
Alignment explanation
Indices: 16897006--16897061 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16896996 GGCTCAAAAT
16897006 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16897032 CTTAGACTTGGAATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16897058 CTTA
1 CTTA
16897062 AGGCAATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16897577 original size:159 final size:157
Alignment explanation
Indices: 16897213--16897713 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
16897203 AACTCTGTAT
*
16897213 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
16897278 CCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCGACCC
66 CC-GTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGACCC
*
16897343 TGCTGCCGCAACCCTCGATCTGATCTGA
130 TGCTGCCACAACCCTCGATCTGATCTGA
* * * * * * *
16897371 TCTTAGAC-TAGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * *
16897435 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCTTAGCGTGCTGTCGGT
65 GCCG-TCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCT-GCGTGCTATC-GA
* * * * *
16897500 TCC-GTTGCCACAACCCTCGGTTTGA-CTGGG
127 CCCTGCTGCCACAACCCTCGATCTGATCT-GA
* * * *
16897530 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
16897595 CTGGCTGGAGAGGCAAAATGCGCAAGCCGAGGATGGGCCCGATCCCCCCTACATGCTATCGATCC
66 CCGTC-GGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGACCC
* * ** * *
16897660 TACTACCGTAACCCTCGATCCGGTCTGA
130 TGCTGCCACAACCCTCGATCTGATCTGA
*
16897688 TCTT--ACATTGGGAATGAACTCCGTAT
1 GCTTAGACA-T-GGAATGAACTCCGTAT
16897714 ACTTAGATTG
Statistics
Matches: 277, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 7 0.03
158 140 0.51
159 123 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGACCCT
GCTGCCACAACCCTCGATCTGATCTGA
Found at i:16897718 original size:26 final size:26
Alignment explanation
Indices: 16897689--16897739 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16897679 CCGGTCTGAT
16897689 CTTACATTGG-GAATGAACTCCGTATA
1 CTTACATTGGAG-ATGAACTCCGTATA
*
16897715 CTTAGATTGGAGATGAACTCCGTAT
1 CTTACATTGGAGATGAACTCCGTAT
16897740 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTACATTGGAGATGAACTCCGTATA
Found at i:16898618 original size:26 final size:26
Alignment explanation
Indices: 16898589--16898641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16898579 CTGGTCTGAT
16898589 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
16898615 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
16898641 C
1 C
16898642 GTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16899350 original size:26 final size:26
Alignment explanation
Indices: 16899312--16899364 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16899302 GGCTCAAACT
16899312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16899338 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16899364 C
1 C
16899365 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16899879 original size:26 final size:26
Alignment explanation
Indices: 16899827--16899879 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16899817 CTGGTCTGAT
* *
16899827 CTTAGATAGGGAATGAACTCTGAATG
1 CTTAGACAGGGAATGAACTATGAATG
* * *
16899853 CTTAGACATGGAATGAGCTATGTATG
1 CTTAGACAGGGAATGAACTATGAATG
16899879 C
1 C
16899880 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTATGAATG
Found at i:16900317 original size:26 final size:26
Alignment explanation
Indices: 16900281--16900333 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900271 CCGGTCCGAT
*
16900281 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16900307 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16900333 C
1 C
16900334 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16900699 original size:26 final size:26
Alignment explanation
Indices: 16900661--16900713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900651 CCAGTCTAAT
*
16900661 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16900687 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16900713 C
1 C
16900714 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16900989 original size:159 final size:159
Alignment explanation
Indices: 16900696--16901105 Score: 373
Period size: 159 Copynumber: 2.6 Consensus size: 159
16900686 GCTTAGACAT
* * *
16900696 GGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACAGCTCGGAG
* * * * * * **
16900761 AGGCAAAATGCACAAGTTGGGGATCGGCCCGGTCCCCCCTTGCTTGCTATCGATCCTGCTATCGT
66 AGGCAAAATACACAAGTCGGGGATCGGACCGGTCCCCCCTTGCTTGCTACCGATCCCGCTACCAC
16900826 AACCCTCAGTCTGATCCAATCTTTGACTG
131 AACCCTCAGTCTGATCCAATCTTTGACTG
** * * *
16900855 GGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTAGCT-GGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC-AGCTCGGA
* * * * * *
16900919 GAGGCATAATACGCAAGTCGGGGATC-GATCGAGTCCCCCTTTG-TGTGCTGCCGATCCCGCTGC
65 GAGGCAAAATACACAAGTCGGGGATCGGACCG-GTCCCCCCTTGCT-TGCTACCGATCCCGCTAC
* * * **** *
16900982 CACAACCCTCGGTC-CAGCTGGGGCTTAGACAT-
128 CACAACCCTCAGTCTGATC-CAATCTTTGAC-TG
* * * * * * *
16901014 GGAACGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCTGGCGCTCAGCCGGC-CGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-ACAGCTCGGA
* *
16901078 GAGGCAGAATACACAAGCCGGGGATCGG
65 GAGGCAAAATACACAAGTCGGGGATCGG
16901106 TCCGATCTTC
Statistics
Matches: 199, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
158 6 0.03
159 188 0.94
160 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACAGCTCGGAG
AGGCAAAATACACAAGTCGGGGATCGGACCGGTCCCCCCTTGCTTGCTACCGATCCCGCTACCAC
AACCCTCAGTCTGATCCAATCTTTGACTG
Found at i:16901200 original size:26 final size:26
Alignment explanation
Indices: 16901162--16901214 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16901152 CCAGTTCAAT
*
16901162 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16901188 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
16901214 C
1 C
16901215 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16901525 original size:26 final size:26
Alignment explanation
Indices: 16901489--16901541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16901479 CTAGTACGAT
16901489 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* ** *
16901515 CTTAGACTGGGGTTGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16901541 C
1 C
16901542 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16901873 original size:21 final size:21
Alignment explanation
Indices: 16901849--16901896 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
16901839 TGCGTACTGG
16901849 CGATCCTGCTGTCACAGCACT
1 CGATCCTGCTGTCACAGCACT
16901870 CGATCCTGCTGTCACAGCACT
1 CGATCCTGCTGTCACAGCACT
16901891 CGATCC
1 CGATCC
16901897 GATCTGATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.40, G:0.19, T:0.23
Consensus pattern (21 bp):
CGATCCTGCTGTCACAGCACT
Found at i:16902272 original size:26 final size:26
Alignment explanation
Indices: 16902234--16902286 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16902224 CTGGTCTGAT
16902234 CTTAGAATGGGAATGAACTCGGTATG
1 CTTAGAATGGGAATGAACTCGGTATG
*
16902260 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGA-ATGGGAATGAACTCGGTATG
16902286 C
1 C
16902287 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCGGTATG
Found at i:16903214 original size:158 final size:157
Alignment explanation
Indices: 16902963--16903288 Score: 406
Period size: 158 Copynumber: 2.1 Consensus size: 157
16902953 GCTTAGACAT
* * * * * *
16902963 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCTGGTCAGAG
1 GGAATGAACTCCGCATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGCTCAGAG
** *
16903028 AGGCAGAATGAGCAAGCCAGGGACCGGCCCGATCCCCCCTATGTGTTGTCGATCCTACTGTCGCA
66 AGGCAGAATGAGCAAGCCAGGGACCGGCCCGAT-CCCCCTACATGCTGTCGATCCTACTGTCGCA
** *
16903093 ACCCTCGATCCAATTTGATCTTAGGCTG
130 ACCCTCGATCCAATCCGATCTTAGGCTC
* * * * * *
16903121 GGAATGAACTCTGCATGCCGAAGTCAACCCACGAAATGAGCGTGCGGGTGCTTAACCGACT-GGA
1 GGAATGAACTCCGCATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCG-CTCAGA
*
16903185 GAGGCAGAATGCA-CAAGCC-GAGGATCGGCCCGATCCCCCTACATGCTGTCGATCCTACTGTCG
65 GAGGCAGAATG-AGCAAGCCAG-GGACCGGCCCGATCCCCCTACATGCTGTCGATCCTACTGTCG
*
16903248 CAACCCTCGATCCAGTCCGATCTTAGGCTC
128 CAACCCTCGATCCAATCCGATCTTAGGCTC
*
16903278 AGAATGAACTC
1 GGAATGAACTC
16903289 AGTACGCTTA
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
157 63 0.44
158 79 0.55
159 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGCATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGCTCAGAG
AGGCAGAATGAGCAAGCCAGGGACCGGCCCGATCCCCCTACATGCTGTCGATCCTACTGTCGCAA
CCCTCGATCCAATCCGATCTTAGGCTC
Found at i:16904236 original size:11 final size:11
Alignment explanation
Indices: 16904220--16904248 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
16904210 CAGTTAGGCT
16904220 CTCCGACGATG
1 CTCCGACGATG
16904231 CTCCGACGATG
1 CTCCGACGATG
16904242 CTCCGAC
1 CTCCGAC
16904249 AATGGTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.41, G:0.24, T:0.17
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16904653 original size:185 final size:185
Alignment explanation
Indices: 16904417--16904784 Score: 486
Period size: 185 Copynumber: 2.0 Consensus size: 185
16904407 CTCAGTCGAC
** *
16904417 CGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCGTTCCCCCTCTGTGTGCTACCAAAACCGCT
1 CGGAGAGACAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGTGTGCTACCAAAACCGCT
** **
16904482 GCCATGACCCTTGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** * * * *
16904547 TGAAACGGGTGTGCGGGTGCTCAGCC-AGCCGGAGAGGCAGAATGCGTAAGCCGAT
131 CGAAACGGGCATACGGGTGCTCAACCGA-CCAGAGAGGCAGAATGCGCAAGCCGAT
* * * * * *****
16904602 CGGAGAGGCATAATGCGCAAGTCGGGGATCAACGCGATCCCCCTCTGTGTGCTGCTGGTTCCGCT
1 CGGAGAGACAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGTGTGCTACCAAAACCGCT
*
16904667 GCCACAACCCTCAATCCAGCTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
*
16904732 CGAAACGGGCATATGGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCG
131 CGAAACGGGCATACGGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCG
16904785 GGAATCGGCT
Statistics
Matches: 156, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
185 155 0.99
186 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (185 bp):
CGGAGAGACAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGTGTGCTACCAAAACCGCT
GCCACAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGGGCATACGGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAT
Found at i:16906068 original size:26 final size:26
Alignment explanation
Indices: 16906039--16906091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16906029 CTAGTTCGAT
*
16906039 CTTAGACTGG-GAATGAACTCTATATG
1 CTTAGACTGGAG-ATGAACTCCATATG
16906065 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
16906091 C
1 C
16906092 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:16907152 original size:159 final size:157
Alignment explanation
Indices: 16906794--16907231 Score: 396
Period size: 159 Copynumber: 2.8 Consensus size: 157
16906784 ACTCCGTATT
* * * * *
16906794 CTTAGACGTTGAATGAACTCCATATGCCTAAGCCAACCCATGATATGAGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16906859 CGGTCGAAGAGGCAGAATGCGCAAGCTAGGGATCAACCCGGTCCCCCCTACGTGCTATTGATCCT
65 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCCAGTCCCCCCTACGTGCTATCGATCCC
** * *
16906924 ACTAATGCAACCCTCGGTCCGATCTGAT
130 ACTAACACAACCCTCGCTCCGATCTGAG
* * * * *
16906952 CTTAGACTGAGAGTGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** ** *
16907017 CGGCCGAGGAGGCATAATGCACAAGCCAGGGATTGGCCCAGTCCCCCTCTGTGTGCTGTCGATCC
65 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCCAGTCCCCC-CTACGTGCTATCGATCC
** * *
16907082 CACTGCCACAACCCTCAGCT-CGGT-TGGGG
129 CACTAACACAACCCTC-GCTCCGATCT-GAG
* * * *
16907111 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGGGCTCAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
16907176 CGACTGGAGTGGCAGAATACGCAAGCCTGGGATCGACCC-GATCCCCCCTACGTGCT
65 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCCAG-TCCCCCCTACGTGCT
16907232 GTTGATCCTG
Statistics
Matches: 221, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 100 0.45
159 116 0.52
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCCAGTCCCCCCTACGTGCTATCGATCCCA
CTAACACAACCCTCGCTCCGATCTGAG
Found at i:16907319 original size:26 final size:26
Alignment explanation
Indices: 16907282--16907333 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16907272 CGATCCAATG
* *
16907282 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
16907308 TTAGACAT-GGAATAAACTCCGTATGC
1 TTAGAC-TGGGAATAAACTCCGTATGC
16907334 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:16907732 original size:158 final size:156
Alignment explanation
Indices: 16907306--16907750 Score: 410
Period size: 157 Copynumber: 2.8 Consensus size: 156
16907296 AACTCTGTAT
* * ** * *
16907306 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCT-AGGTAACCCACGAAATGAGCGTATGGGCGCTCAA
** ** * * *
16907371 CCGATCAAAGAGGCAGAATGCATAAGCTGGGGATCAGCCTGGTCCCCCCTACGTGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTAGCGATCC
* * * * * * *
16907436 TGCTGCGCAACCCTCTGTCCGGTCTGA
130 CGCTCCCCAACCCTCGGTCCAGCCAGA
* * * * * * * *
16907463 TCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAGGT-AACCCACGAAATGAGCGTATGGGCGCTCA
* * * * * * * * * *
16907527 GCCTACCGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTTTACTTGC-AGCTGG
64 ACCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTACGTGCTAGC-GA
*
16907591 TCCCGCTACCCCAACCCTCGGTCCAGCCAGG
127 TCCCGCT-CCCCAACCCTCGGTCCAGCCAGA
* * * *
16907622 GCTTAGACATGGAATGAACTCCCTATACCTAGGTAACCCACGAAATGGGCATATGGGCGCTCAAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAGGTAACCCACGAAATGAGCGTATGGGCGCTCAAC
*
16907687 CGATCGGAGAGGCAGAATGCGCAAGCTGTGGATCGGCCCGGTCCCCCCTACGTGCT-GCCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTAG-CGATCC
16907751 TACTGCTGCA
Statistics
Matches: 218, Mismatches: 62, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
156 2 0.01
157 95 0.44
158 77 0.35
159 43 0.20
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAGGTAACCCACGAAATGAGCGTATGGGCGCTCAAC
CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTAGCGATCCC
GCTCCCCAACCCTCGGTCCAGCCAGA
Found at i:16907816 original size:26 final size:26
Alignment explanation
Indices: 16907780--16907832 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16907770 TTGGTCTGAT
16907780 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
16907806 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16907832 C
1 C
16907833 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16916257 original size:26 final size:26
Alignment explanation
Indices: 16916221--16916273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16916211 CTGGTTCAAT
*
16916221 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16916247 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16916273 C
1 C
16916274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16916593 original size:26 final size:26
Alignment explanation
Indices: 16916564--16916616 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16916554 CTGGTCCGAT
16916564 CTTAGACT-AGGAATCAACTCCGTATG
1 CTTAGACTGAGG-ATCAACTCCGTATG
* *
16916590 CTTAGACTGAGGATGAACTTCGTATG
1 CTTAGACTGAGGATCAACTCCGTATG
16916616 C
1 C
16916617 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATCAACTCCGTATG
Found at i:16916877 original size:343 final size:342
Alignment explanation
Indices: 16915899--16916883 Score: 1155
Period size: 343 Copynumber: 2.9 Consensus size: 342
16915889 GATCCGGTCT
*
16915899 GTATGCTTAGACT-AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCA
1 GTATGCTTAGACTGA-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCG
* ** *
16915963 CTCAGTCGGCCTGGA-AGGCATAATGCATAAGTCGGGGA-CTAGCCCGGTCCCCCATTGCGTGCT
65 CTCAGCCGG-CTGGAGAGGCATAATGCATAAGTCGGGGATCT-GCCTAGTCCCCCGTTGCGTGCT
* * *
16916026 GCCGGTCCCGCTACCACAAACCACGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCC
128 GCCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * *
16916091 TAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGACTGGAGAGGTAGAATGCGTAAGCCG
193 TAAGCCAACCCATGAAAT-GGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG
* * *
16916156 GGGATCGGCCTGATCCCCCCTACGTGCTGCCGATCCTGCTGCAGCAACCCTCGGTCTGGTTCAAT
257 GGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAGTCTGGTCCAAT
* *
16916221 CTTAGACTGGGAATGAACTCC
322 CTTAGACTAGGAATCAACTCC
* * * * * *
16916242 TTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGT-TGGGGTG
1 GTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGT-GGGCG
* * * *
16916306 CTTAGCCGGCTGGAGAGGCATAATGCATAAGTCGGGGATCAG-CTCGATCCCCCGTTGTGTGCTG
65 CTCAGCCGGCTGGAGAGGCATAATGCATAAGTCGGGGATCTGCCTAG-TCCCCCGTTGCGTGCTG
** * * * * * * *
16916370 TTGGTCCCGTTGCCATAACCCTCGATCTGGCTGGGGCTTAGACATCGAATGAACTACCTATGCCT
129 CCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * **
16916435 AAGCCAACCCACGAAATGGTCGTGCGGGCGCTCAGCCAACCGGAGAGGCA-AAGTGCACATGCTA
194 AAGCCAACCCATGAAATGG-CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAA-TGCGCAAGCCG
* * * ** * * * *
16916499 GGGATCAGCCTGATCCTCCATGTGTGCTATCGATCCTGCTATC-GCAACCCTTAGTCTGGTCCGA
257 GGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCT-GCAGCAACCCTCAGTCTGGTCCAA
16916563 TCTTAGACTAGGAATCAACTCC
321 TCTTAGACTAGGAATCAACTCC
* * *
16916585 GTATGCTTAGACTGAGGATGAACTTCGTATGCCTAAGTCAACCAACGAAATGAGTGTGTGGGCGC
1 GTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGC
* * * * *
16916650 TCAGCCGG-TCGGAGAGGCATAATGCAAAAG-CTAGGGATCTGCCTAGTCCCTCGCTGCGTGCTA
66 TCAGCCGGCT-GGAGAGGCATAATGCATAAGTC-GGGGATCTGCCTAGTCCCCCGTTGCGTGCTG
**
16916713 CCGGTCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
129 CCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * *
16916778 AAGCCAACCCATGAAACTAGCGTGTC-GGTGTTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCG
194 AAGCCAACCCATGAAA-TGGCGTG-CGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG
* * *
16916842 GGGATCGG-TTCAGTCCCCCCTACATGCTGTCGATCCTGCTGC
257 GGGATCGGCCTGA-TCCCCCCTACGTGCTGTCGATCCTGCTGC
16916884 CTGTCCTACT
Statistics
Matches: 527, Mismatches: 99, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
342 17 0.03
343 499 0.95
344 11 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (342 bp):
GTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGC
TCAGCCGGCTGGAGAGGCATAATGCATAAGTCGGGGATCTGCCTAGTCCCCCGTTGCGTGCTGCC
GGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCATGAAATGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
TCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCAGTCTGGTCCAATCTTA
GACTAGGAATCAACTCC
Found at i:16917176 original size:158 final size:157
Alignment explanation
Indices: 16916887--16917278 Score: 416
Period size: 158 Copynumber: 2.5 Consensus size: 157
16916877 CTGCTGCCTG
* * * * *
16916887 TCCTACTGTCGCAACCCTCGATCCGGACCGACTTAGACTGGGAATGAACTCCGTCTTCCTAAGCC
1 TCCTACTGTCACAACCCTCGATCCGGTCTGACTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * ** *
16916952 AACCCATGAAACGAACGTGCGGGCGCTCAGTCGGTCGGAGAGGCAAAATGCTTAAGCTGGTGATC
66 AACCCATGAAACGAACGTGCGGGCACTCAGCCAGTCGAAAAGGCAAAATGCTCAAGCAAGTAATC
*
16917017 GGTCCGAT-CCCTCTTGCATGCTGTCGA
131 GGCCCGATCCCCTC-TGCATGCTGTCGA
* *
16917044 TCCTACTGTCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGT
1 TCCTACTGTCACAACCCTCGATCCGGTCTGA-CTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * *
16917109 CAACCCATGAAACGAGTGTGCGGGCACTGAGCCAGTCGAAAAGGCATAATG-TACAAGCCAAG-A
65 CAACCCATGAAACGAACGTGCGGGCACTCAGCCAGTCGAAAAGGCAAAATGCT-CAAG-CAAGTA
* *
16917172 ATCGGCCCGATCCCCTCTGCGTGCTGTCGG
128 ATCGGCCCGATCCCCTCTGCATGCTGTCGA
** * * * * *
16917202 TCCCGCTGCCACAACCCTCGATCCGGT-TGGGGCTTAGAGAT-GGAATGAACTCCCTACGCCTAA
1 TCCTACTGTCACAACCCTCGATCCGGTCT--GACTTAGA-CTGGGAATGAACTCCGTATGCCTAA
16917265 GCCAACCCATGAAA
63 GCCAACCCATGAAA
16917279 TGGGCATCCG
Statistics
Matches: 196, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
157 30 0.15
158 157 0.80
159 9 0.05
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
TCCTACTGTCACAACCCTCGATCCGGTCTGACTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAACGTGCGGGCACTCAGCCAGTCGAAAAGGCAAAATGCTCAAGCAAGTAATC
GGCCCGATCCCCTCTGCATGCTGTCGA
Found at i:16917425 original size:26 final size:26
Alignment explanation
Indices: 16917396--16917448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16917386 CCGGTCCAAT
16917396 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16917422 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16917448 C
1 C
16917449 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16918728 original size:317 final size:323
Alignment explanation
Indices: 16918299--16918921 Score: 762
Period size: 329 Copynumber: 1.9 Consensus size: 323
16918289 ATCTGATCCA
*
16918299 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGAGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGAGGGCACTGA
* * * * *
16918364 ACCGATCGGAAAGGCATAATGCGTAAGAAGGGGATCAGCCTGATCCCTCTCTACATGC-T-G-C-
66 ACCGACCGGAAAGGCATAATGCGCAAGAAGAGGATCAGCCCGATCCCTCACTACATGCGTCGCCA
16918425 C-G-GCCCTGCTGCCACAACCCTCAGACTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCC
131 CTGAGCCCTGCTGCCACAACCCTCAGACTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCC
* * *
16918488 TAAGCCATCCCACGA-AAC-AGTCGTGCGGGTGCTCAGTCAGCCGGAGAGGCAAAATGCGCAAGC
196 TAAGCCAACCCAC-ATAACGA-ACGTGCGGGCGCTCAGTCAGCCGGAGAGGC-AAATGCGCAAGC
* *
16918551 CAAGGATCGGCCCGGT-CCCTCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCC
258 CAAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCC
16918615 G
323 G
* * ** *
16918616 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGT-ACGGGTGCTT
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGA-GGGCACTG
* * * ** * * *
16918680 AGCCGACCGGAGAGGCATAATTCGCAAGCCGAGGATTAGCCCGATCCCTCACTGCGTGCTGTCGA
65 AACCGACCGGAAAGGCATAATGCGCAAGAAGAGGATCAGCCCGATCCCTCACTACATGC-GTCG-
* * * * *
16918745 TCCCACTGTCAGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCT
128 --CCACTG--AGCCCTGCTGCCACAACCCTCAGACTGGCTGGGGCTTAGACATAGAATGAACTCC
* * *
16918810 GTATGCCTAAGCCAACCCACATAACGAACGTGCGGGCGCTCAGTCGGTCGGAGAGGCAAATGCGC
189 CTATGCCTAAGCCAACCCACATAACGAACGTGCGGGCGCTCAGTCAGCCGGAGAGGCAAATGCGC
* ** *
16918875 AAGTCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTTGATCCTGCT
254 AAGCCAAGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCT
16918922 ACGGTCCTGT
Statistics
Matches: 254, Mismatches: 36, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
316 1 0.00
317 102 0.40
319 1 0.00
320 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
328 25 0.10
329 120 0.47
330 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (323 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGAGGGCACTGA
ACCGACCGGAAAGGCATAATGCGCAAGAAGAGGATCAGCCCGATCCCTCACTACATGCGTCGCCA
CTGAGCCCTGCTGCCACAACCCTCAGACTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCC
TAAGCCAACCCACATAACGAACGTGCGGGCGCTCAGTCAGCCGGAGAGGCAAATGCGCAAGCCAA
GGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCCG
Found at i:16920341 original size:159 final size:158
Alignment explanation
Indices: 16920090--16920381 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 158
16920080 TCAGCCGGTC
* *
16920090 GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCCGCGTGCTATCAATCCTGCTAC
1 GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCCGAGTGCTATCAATCCCGCTAC
* * *** * * *
16920155 CACAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCTATTTGCCGAAGTCAACCCACG
66 CACAACCCTCGGTCTGAGCTGAGCTTAGACACGGAATGAACTCCATATGCCGAAGCCAACCCACG
16920220 AAATGAGAGTTCAGGCGCTGTGCCAGCT
131 AAATGAGAGTTCAGGCGCTGTGCCAGCT
* * * * * **
16920248 GGAGAGGCATAATGCGCAAGTC-GAGGATCGGCCCGGTCCCTCTCTGAGTGCTGTCGGTCCCGCT
1 GGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCC-CTCCGAGTGCTATCAATCCCGCT
* * * *
16920312 GCCACAACCCTCGGTCTG-GCTAGGGCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCC
64 ACCACAACCCTCGGTCTGAGCT-GAGCTTAGACACGGAATGAACTCCATATGCCGAAGCCAACCC
16920376 ACGAAA
128 ACGAAA
16920382 ACGGGCGTGC
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 37 0.34
159 72 0.65
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCCGAGTGCTATCAATCCCGCTAC
CACAACCCTCGGTCTGAGCTGAGCTTAGACACGGAATGAACTCCATATGCCGAAGCCAACCCACG
AAATGAGAGTTCAGGCGCTGTGCCAGCT
Found at i:16922138 original size:26 final size:26
Alignment explanation
Indices: 16922087--16922139 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922077 GGCTCAAACT
*
16922087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16922113 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16922139 C
1 C
16922140 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16922971 original size:26 final size:26
Alignment explanation
Indices: 16922942--16922994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922932 CCGATCCGAT
* *
16922942 CTTAGGCTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAACGAACTCCGCATG
* *
16922968 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGCATG
16922994 C
1 C
16922995 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGCATG
Found at i:16923373 original size:26 final size:26
Alignment explanation
Indices: 16923322--16923374 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16923312 CCGATCCGAT
*
16923322 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16923348 CTTAGACATA-GAATGAACTCCGTATG
1 CTTAGAC-TAGGAATGAACTCCATATG
16923374 C
1 C
16923375 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16923616 original size:159 final size:159
Alignment explanation
Indices: 16923452--16923839 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 159
16923442 GGACCGACCT
* * * *
16923452 AGTCCCCCCCTCCGTGCTATCGATCCTACTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGG
1 AGTCCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGG
* * *
16923517 GAATGAACT-CCGTATGCGTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTGAG-TCAACCGGA
66 GAATGAACTACC-TATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTGAGCT-AACCGGA
* *
16923580 GAGGCATAATGCCCAAG-TCGGGGATTA-GCCC
129 AAGGCAGAATGCCCAAGCT-GGGGA-TAGGCCC
* ** * * * * * * * * **
16923611 GGTCCCCTTCTGCGTGTTGTCGGTCTTGCTGCCACAACCCTCAGTCC-AACTGGGGCTTAGACAT
1 AGTCCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCT-GATCTTAGAC-T
* * * *
16923675 -GGAATGAACTACCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTTAGCTGACCGGA
64 GGGAATGAACTACCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTGAGCTAACCGGA
* *
16923739 AAGGCAGAATGCGCAAGCTGGGGATAGGCCT
129 AAGGCAGAATGCCCAAGCTGGGGATAGGCCC
* * *
16923770 AGT-CCCCCCTGCGTGCTATCGATCCTACTGTCGCAGCCCTCGGTCCGATCCGATCTTAGACTGG
1 AGTCCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGG
16923834 GAATGA
66 GAATGA
16923840 GCTTCTTATG
Statistics
Matches: 177, Mismatches: 44, Indels: 17
0.74 0.18 0.07
Matches are distributed among these distances:
157 1 0.01
158 51 0.29
159 120 0.68
160 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
AGTCCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGG
GAATGAACTACCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTGAGCTAACCGGAAA
GGCAGAATGCCCAAGCTGGGGATAGGCCC
Found at i:16924243 original size:26 final size:26
Alignment explanation
Indices: 16924192--16924244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924182 CCGGTCTGAT
*
16924192 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
*
16924218 CTTAGACATGGAATGAACTTCATATG
1 CTTAGACATGGAATGAACTCCATATG
16924244 C
1 C
16924245 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16924264 original size:870 final size:872
Alignment explanation
Indices: 16922389--16924421 Score: 2229
Period size: 870 Copynumber: 2.3 Consensus size: 872
16922379 CCCCCTTACG
* * * *
16922389 TGCTGCCGATCCTGCTACCGCAACCCTCGGTCCAGT-TAGATCTTAGACTGGGAATGAACTCTGT
1 TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCTGT
* * * ** *
16922453 ATGCTTAGA-TTGAGGATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGGT
65 ATGCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGAT
* * * *
16922517 CAGTCAGCTGGAGAGGTCAACAGGAGAGGCAGCAAGCGCAAGCC-GAGGACCGACCCGACCCCCC
129 CCGTCAGCCGGAGA-G---AC---A-A---A--AAGCGCAA-CCTGAGGACCGACCAGTCCCCCC
* * * * *
16922581 CTACGTTCTGTCGATCTTGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACT
180 CTACGTGCTGTCGATCCTGCTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
* *
16922646 CCGTATGCCTAAGTCAACCCACCAAACAAGCGTTCGGGTGCTGAGCCAACCGGAGAGGCATAATG
245 CCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCATAATG
** * * * * * **
16922711 CGGAATCTGAGGATCGACTCGGTCCCCCTCTGTGTGCTGTCGGTCCCGTTGCCACAACCGTTGGT
310 CCCAATCTGAGGATAGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGT
** *
16922776 TGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGG
375 CAACTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGG
* * * *
16922841 GCAGTCAACCGACAGGAGAGACAAAATGCGCAAGTCGGGGATCGGCTCGATCGCCCCTGCGTGCT
440 GCAGTCAACCGACAGGAAAGACAAAATGCGCAAGTCGGGGATAGGCTAGATCCCCCCTGCGTGCT
* * *
16922906 ACGATCCTGCTGTCGCAACCCTTAATCCGATCCGATCTTAGGCTGGGAATGAACTCCGCATGCTT
505 ACGATCCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTT
* * * * **
16922971 AGACTGGGGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTCGG
570 AGACTGGGGACGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTA-GGGAGC-CACTCAA
* *
16923036 CCGGAGAGGCCAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTG
633 CC-G-GA-GCCAG-C-GAGAGGCATAATGCGCAAGCTGAGGATCAGCCCAGTCCCCCTCTGCGTG
** * ** *
16923101 CTGCCAATCACGCTGTTGGTCCTACTGTCACAACCCTCGGTCGGCTGGGGCTTAGACATGGAATG
693 CTGCCAATCACGCTGCCGGTCCCACTACCACAACCCTCGGTCGACTGGGGCTTAGACATGGAATG
* * **
16923166 AACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAGCCGATCGGAGTTACAG
758 AACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGACAG
* ** * * * *
16923231 AATGCGTAAGCTGGGGATTGGCCCGGTCCCTCTCTGTGTGCTGCTGATCC
823 AATGCGCAAGCCAGGGATCGGCCCGATCCCTCTATGTGCGCTGCTGATCC
* * * * * * *
16923281 TGCTGCTGGTCCTGCTACTGTAACCTTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCTATA
1 TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTA
* * *
16923346 TGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCC
66 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCC
* * *
16923411 GTC-GACCGGAGAGACAAAAACCGCAACCTGAGGACCGACCTAGTCCCCCCCTCCGTGCTATCGA
131 GTCAG-CCGGAGAGACAAAAAGCGCAACCTGAGGACCGACC-AGTCCCCCCCTACGTGCTGTCGA
* *
16923475 TCCTACTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGT
194 TCCTGCTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
16923540 CAACCCATGAAACAAGCGTGCGGGTGCTGAGTCAACCGGAGAGGCATAATGCCCAAGTC-GGGGA
259 CAACCCACGAAACAAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCATAATGCCCAA-TCTGAGGA
* * **
16923604 TTAG-CCCGGTCCCCTTCTGCGTGTTGTCGGTCTTGCTGCCACAACCCTCAGTCCAACTGGGGCT
323 -TAGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGT-CAACTGGGGCT
* * *
16923668 TAGACATGGAATGAACTACCTATGCCTAAGCCAACCCATGAAATA-G-GCGTGCGGGC-GCTTAG
386 TAGACATGGAATGAACTACCTATGCCTAAGCCAACCCA-CAAA-ACGAGCGTGCGGGCAG-TCAA
* * * *
16923730 CTGACCGGAAAGGCAGAATGCGCAAG-CTGGGGATAGGCCTAG-TCCCCCCTGCGTGCTATCGAT
448 CCGACAGGAAAGACAAAATGCGCAAGTC-GGGGATAGG-CTAGATCCCCCCTGCGTGCTA-CGAT
* ** * * **
16923793 CCTACTGTCGCAGCCCTCGGTCCGATCCGATCTTAGACTGGGAATGAGCTTCTTATGCTTAGACT
510 CCTACTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACT
** * *
16923858 GGGGGTGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGT-GTGAG-CACTCAACC-GA-T
575 GGGGACGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTAGGGAGCCACTCAACCGGAGC
* * * * * **
16923919 C-G-GATAGGCATAATGCGTAAG-TCGAGGATCAGCCCAGTCCCCCTCTTCGTGCTGTCGATCTT
640 CAGCGAGAGGCATAATGCGCAAGCT-GAGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAATCAC
* * *
16923981 GCTGCCGGTCCCGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTTTGTAT
704 GCTGCCGGTCCCACTACCACAACCCTCGGT-CGACTGGGGCTTAGACATGGAATGAACTTCGTAT
* * * ** * *
16924046 GCCTAAGCTAACCCACGAAACGAGCGTGCG-GTCGTTCAGTTGGCCGGAGAGGCAGAATGCGCAA
768 GCCTAAGCCAACCCACAAAACGAGCGTGCGAG-CGCTCAGCCGACCGGAGAGACAGAATGCGCAA
* *
16924110 GCCAGGGATCGGCCCGATCCCTTTATGTGCGTTG-TCGATCC
832 GCCAGGGATCGGCCCGATCCCTCTATGTGCGCTGCT-GATCC
*
16924151 TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC-ATGGAATGAACTCCGT
1 TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTA-GGAATGAACTCTGT
*
16924215 ATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATC
65 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATC
*** * * * * * * * * * * *
16924280 AACCAGCCGGAGAGGCAAAAAGCACAA-GTCAGGGATCGGGCCGGTCCCTCTCTGCGTGCTGCCG
130 CGTCAGCCGGAGAGACAAAAAGCGCAACCTGA-GGA-CCGACCAGTCCCCCCCTACGTGCTGTCG
* ** * *
16924344 ATCCTGCTGTCGTAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
193 ATCCTGCTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*
16924409 CCAACCCACGAAA
258 TCAACCCACGAAA
16924422 TGGGTGTGCG
Statistics
Matches: 958, Mismatches: 161, Indels: 66
0.81 0.14 0.06
Matches are distributed among these distances:
868 1 0.00
869 77 0.08
870 335 0.35
871 5 0.01
872 1 0.00
873 1 0.00
875 2 0.00
878 8 0.01
879 18 0.02
880 174 0.18
881 107 0.11
882 106 0.11
883 1 0.00
884 1 0.00
885 1 0.00
888 2 0.00
891 2 0.00
892 115 0.12
893 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (872 bp):
TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTA
TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCC
GTCAGCCGGAGAGACAAAAAGCGCAACCTGAGGACCGACCAGTCCCCCCCTACGTGCTGTCGATC
CTGCTGTTGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCATAATGCCCAATCTGAGGATAG
ACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCAACTGGGGCTTAGAC
ATGGAATGAACTACCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCAGTCAACCGACAGG
AAAGACAAAATGCGCAAGTCGGGGATAGGCTAGATCCCCCCTGCGTGCTACGATCCTACTGTCGC
AACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGACGAACT
CCGTATGCCTAAGTCAACACACGAAACGAGCGTAGGGAGCCACTCAACCGGAGCCAGCGAGAGGC
ATAATGCGCAAGCTGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAATCACGCTGCCGGTCCC
ACTACCACAACCCTCGGTCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
CACAAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGACAGAATGCGCAAGCCAGGGATCGGCC
CGATCCCTCTATGTGCGCTGCTGATCC
Found at i:16924570 original size:26 final size:26
Alignment explanation
Indices: 16924534--16924586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924524 CTAGTCTGAT
*
16924534 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
16924560 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16924586 C
1 C
16924587 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16924760 original size:26 final size:26
Alignment explanation
Indices: 16924731--16924783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924721 CCAATTTGAT
16924731 CTTAGACAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTTTGTATG
* *
16924757 CTTAGACATGGATTGAACTTTGTATG
1 CTTAGACAGGGAATGAACTTTGTATG
16924783 C
1 C
16924784 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTTTGTATG
Found at i:16925176 original size:697 final size:686
Alignment explanation
Indices: 16924218--16926725 Score: 2265
Period size: 697 Copynumber: 3.6 Consensus size: 686
16924208 ACTCCGTATG
* * * * **
16924218 CTTAGACAT-GGAATGAACT-TCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGATCA
1 CTTAGAC-TGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGC-ATTG
* * * * ** * * *
16924281 ACCAG-CCGGAGAGGCAAAAAGCACAAGTCAGGGATCGGGCCGGTCCCTCTCTGCGTGCTGCC-G
63 AGCAGACCGGAGAGGCATAATGCACAAG-CGGGGATCGACCCGATCCCCCTCTGCGTGCTACCAG
** * ** * * ** *
16924344 ATCCTGCTGTCGTAACCCTTGGTCTGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTA
127 -TCCCACTGCCACAACCC-TCGTC-CGTCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
* * * ** * * *
16924407 AGCCAACCCACGAAATGGGTGTGCGGGTGCTTAGCTGGCTGGAGAGGTAGAATGCGCAAGCTAGG
188 AGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGG
* * *
16924472 TATCGG-CCTGGTCCCCCTTACGTGCTGTCGATCCTGCTGCCTAACCCTCGGTCTAGTCTGATCT
253 GATCGGCCCTGGTCCCCC-TACGTGCTATCGATCCTGCTGCCTAACCCTCGGTCTAGTCCGATCT
**
16924536 TAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCA
317 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCA
* ** *
16924600 CGAAACGAGCATGCAGGCGTTCAACCGGTCGAAGAGGCAGAATGCGCAAG-TCGGGGATCGACTC
381 CGAAACGAGCATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACTC
*
16924664 GATGCCACCCTGCGTGCTGCCAATCCAGCTGCAGGTCCTGCTGCCACAAACCTCGGTCCAATTTG
445 GAT-CC-CCCTGCGTGCTGCCGATCCAGCTGC-GGTCCTGCTGCCACAAACCTC-GT-C-A-TTG
* *
16924729 ATCTTAGACAGGGAATGAACTTTGTATGCTTAGACATGGATTGAACTTTGTATGCCTAAGCCAAC
503 ATCTTAGAC-GGGAATGAACTTAGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAAC
* * * *
16924794 CCACGAAATGAGCGTGCGGGCTCTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGGGGACCGGT
567 CCAC-AAATGAGCGTGCGAGCTCTCAGCTGGCTGGAGAGGCAGAATGCACAAGCCGGGGACCGGC
* ** * * * * *
16924859 TCAATCCCCCCTGCATCCTGTTGATCCTTCTA-CTGCAACCCTCGGTTCGATCTGAT
631 CCGGTCCCCCCTGCATGCTGTCGATCCTTCTATC-GCAACACTCGGTCCGGTCTGAT
* * * * *
16924915 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCAGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGC
* * *
16924980 AGACCGGAGAGGCATAATGCGCAAGTCGGGGATC-AGCTCGATCCCCCTCTGCGTGGTACCAGTC
66 AGACCGGAGAGGCATAATGCACAAG-CGGGGATCGA-CCCGATCCCCCTCTGCGTGCTACCAGTC
16925044 CCACTGCCACAACCCTCAGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCACTGCCACAACCCTC-GTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * *
16925109 ACCCACAAAACGGGTGTGCGGGGGCTCAACCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCG
193 ACCCACGAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
* * * * * * * * * *
16925174 GCCCAGTTGCCCCTGCGTGCTATCGATCCTGTTGCCGCAACCTTTGGTCTGGTCTGATCTTAGAC
258 GCCCTGGTCCCCCTACGTGCTATCGATCCTGCTGCC-TAACCCTCGGTCTAGTCCGATCTTAGAC
* * * * *
16925239 TGGGAATGAGCTCCGTATGCTTAAACTGGCGATGAACTCTGTATGCCTAAGTCAACCCACAAAAT
322 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
** * * * *
16925304 GAGCATGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATTCG-CCCGCTCCC
387 GAGCATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGA-TCGACTCGATCCC
* * * * * * * *
16925368 CCATACGTGCTACCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTCTGATCTTAG
451 CC-TGCGTGCTGCCGATCCAGCTGC-GGTCCTGCTGCCACAAACCTC-G-TC-AT-TGATCTTAG
* * *
16925433 ACTGGGAATGAACTCCA-TATGCCTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAA
510 AC-GGGAATGAACT-TAGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAA
* * * * *
16925497 GACGAGCGTGCAAGCGT-T-ATGTTGG-TCGGAGAGGCAGAATGCATAAGCCGGGGACCAGCCCG
573 -ATGAGCGTGCGAGC-TCTCA-GCTGGCT-GGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCG
* * * * *
16925559 GTCCACCCTGCATGCTATCGATACTAT-TGTCGCAACACTAGGTCCGGT-TCGAT
634 GTCCCCCCTGCATGCTGTCGATCCT-TCTATCGCAACACTCGGTCCGGTCT-GAT
* * * **
16925612 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCATGAAATGAGCGTTCGGGCACAGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGC
* *
16925677 CGACCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGGTCC
66 AGACCGGAGAGGCATAATGCACAAG-CGGGGATCGACCCGATCCCCCTCTGCGTGCTACCAGTCC
* * * *
16925742 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAATCCAA
130 CACTGCCACAACCCTCG-TCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
*** * *
16925807 CCCACGAAATGGGCGTGCGGGCGCTCAGCCAATTGGAGAGGCAGAATGTGCAAGCCGGGGATCGG
194 CCCACGAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * * * * *
16925872 TCC-GGTCCACCCTACGTGCTACCGATCCTGCTG-TTGCAACCCTCGATCCAATCCGATCTTAGA
259 CCCTGGTCC-CCCTACGTGCTATCGATCCTGCTGCCT--AACCCTCGGTCTAGTCCGATCTTAGA
* * * *
16925935 CTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACACATGAAA
321 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * ** * * * * *
16926000 TGAACGGGTGGGCACTCAGCCAGTCGAAGAGGCAGAATGCGTAAACTGGGGATC-AGCTCGGTCC
386 CGAGCATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGA-CTCGAT-C
*
16926064 CCCTCTGCGTGCTGCCGATCCCA-CTGTCGGTCCTGCTGCCA-TAACC-C-TCA--G-TC-----
449 CCC-CTGCGTGCTGCCGAT-CCAGCTG-CGGTCCTGCTGCCACAAACCTCGTCATTGATCTTAGA
* * * *
16926117 C--G---G--C-TAG--GGCTTGGACATGGAATGATCTTCGTATGCCTAAGCCAACCCACCAAAT
511 CGGGAATGAACTTAGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCA-CAAAT
* * * * * * *
16926172 GAGCGTGCGAGCGCTCAGCTGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC
575 GAGCGTGCGAGCTCTCAGCTGGCTGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCC
* * * * * *
16926237 CCTACGTGCTGTCGATCCTGCGATCGCAACACTCAGTCCGGTCCGAT
640 CCTGCATGCTGTCGATCCTTCTATCGCAACACTCGGTCCGGTCTGAT
* *
16926284 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTATTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAG-
* ** * *
16926349 CAG-TCGGAGAGGCATAATGCACAAGCCAGGATCGGACCCGAT-CCCTTCTGCGTGCTA-CTGTC
65 CAGACCGGAGAGGCATAATGCACAAGCGGGGATC-GACCCGATCCCCCTCTGCGTGCTACCAGTC
* *
16926411 CTATCT-CCACAACCCTCGGTACAGT-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
129 CCA-CTGCCACAACCCTC-GT-CCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
16926474 CAACCCACGAAATAGGCATGCGGGCGCTCAGCCAGCCGGATAGGCAAAATGCGTAAGCCAAGGAT
191 CAACCCACGAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGAT
** * ** * * * *
16926539 CGGTTC-AGTCCCCCCCGCGTGCTGTTGATCCTGCTGTCGC-AACCCTCGGTCTGGTCCAATCTT
256 CGGCCCTGGT-CCCCCTACGTGCTATCGATCCTGCTG-C-CTAACCCTCGGTCTAGTCCGATCTT
* * * * *
16926602 AGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCATG
318 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACG
* ** * * * * *
16926667 AAACGAGCGTGCGAACGCTCAGCC-GACTAGAGAGACAGGATGCGCAAGCTGGGGATCGA
383 AAACGAGCATGCGGGCACTCAGCCGGTCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGA
16926726 ACGGGTGGTA
Statistics
Matches: 1476, Mismatches: 282, Indels: 132
0.78 0.15 0.07
Matches are distributed among these distances:
669 3 0.00
670 249 0.17
671 28 0.02
672 207 0.14
673 7 0.00
675 1 0.00
677 1 0.00
680 1 0.00
683 1 0.00
688 2 0.00
689 1 0.00
693 2 0.00
696 27 0.02
697 767 0.52
698 170 0.12
699 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (686 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGC
AGACCGGAGAGGCATAATGCACAAGCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCAGTCCC
ACTGCCACAACCCTCGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
CTGGTCCCCCTACGTGCTATCGATCCTGCTGCCTAACCCTCGGTCTAGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
ATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCTGC
GTGCTGCCGATCCAGCTGCGGTCCTGCTGCCACAAACCTCGTCATTGATCTTAGACGGGAATGAA
CTTAGTATGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAATGAGCGTGCGAG
CTCTCAGCTGGCTGGAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGGTCCCCCCTGCATGCTG
TCGATCCTTCTATCGCAACACTCGGTCCGGTCTGAT
Found at i:16925808 original size:159 final size:158
Alignment explanation
Indices: 16925612--16925920 Score: 361
Period size: 159 Copynumber: 1.9 Consensus size: 158
16925602 CCGGTTCGAT
* * * * *
16925612 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCATGAAATGAGCGTTCGGGCACAGAGC
1 CTTAGACTGGGAATGAAATCCCTATGCCTAAATCAACCCACGAAATGAGCGTGCGGGCACACAGC
* * * * *
16925677 CGACCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGGTCC
66 CAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACC-CTACGTGCTACCGATCC
16925742 CGCTGCCACAACCCTCGATCCGGCTGGGG
130 CGCTGCCACAACCCTCGATCCGGCTGGGG
* * *
16925771 CTTAGACAT-GGAATGAAATCCCTATGCCT-AATCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAAATCCCTATGCCTAAAT-CAACCCACGAAATGAGCGTGCGGGCACACA
** ** ** *
16925834 GCCAATTGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCACCCTACGTGCTACCGATC
64 GCCAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTACGTGCTACCGATC
* ***
16925899 CTGCTGTTGCAACCCTCGATCC
129 CCGCTGCCACAACCCTCGATCC
16925921 AATCCGATCT
Statistics
Matches: 124, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 35 0.28
159 88 0.71
160 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAAATCCCTATGCCTAAATCAACCCACGAAATGAGCGTGCGGGCACACAGC
CAACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCTACGTGCTACCGATCCC
GCTGCCACAACCCTCGATCCGGCTGGGG
Found at i:16925970 original size:26 final size:26
Alignment explanation
Indices: 16925929--16925981 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16925919 CCAATCCGAT
16925929 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16925955 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
16925981 C
1 C
16925982 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16927519 original size:26 final size:26
Alignment explanation
Indices: 16927490--16927542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16927480 CCGGTTTGAT
16927490 CTTAGACTCAGAATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
** *
16927516 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTCAGAATGAACTCCGTATG
16927542 C
1 C
16927543 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTCAGAATGAACTCCGTATG
Found at i:16934227 original size:26 final size:26
Alignment explanation
Indices: 16934198--16934250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16934188 CCGGTCTGAT
16934198 CTTAGACT-GGGATTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCTGTATG
*
16934224 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
16934250 C
1 C
16934251 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:16934956 original size:26 final size:26
Alignment explanation
Indices: 16934918--16934970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16934908 GGCTCAAAAT
*
16934918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16934944 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16934970 C
1 C
16934971 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16935383 original size:159 final size:158
Alignment explanation
Indices: 16934943--16935383 Score: 438
Period size: 158 Copynumber: 2.8 Consensus size: 158
16934933 AACTCCGTAT
* * * *
16934943 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAACGAGCGTGCAGGCGCCCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCAG
** *
16935008 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATTAATCT
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTTAATCT
* * ** **
16935073 TGTTGTCGTAACCCTCAGTCTGGTCTGA
131 CGCTACCACAACCCTCAGTCTGGTCTGA
* ** * * * * * * * *
16935101 TCTTAGAC-TGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAACGAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCA
* * * * ** *
16935165 GTCGGCCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTTAGT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTTAAT
* *
16935230 CTCGCTACCACAACCCTCAAT-TCGG-CTGGG
129 CTCGCTACCACAACCCTCAGTCT-GGTCT-GA
* * *
16935260 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAAGAAACGGGGCGTGCTGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAAC-GAGCGTGCAGGCGCTCA
* * ** * *
16935325 GCCGGCCGGAGAGGCAGAATTCGTAAGCCAGGGATTGGCCCGATCCCTCCTGCGTGCTG
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTG
16935384 CAGATCCTAC
Statistics
Matches: 221, Mismatches: 56, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 92 0.42
159 79 0.36
160 49 0.22
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTTAATCT
CGCTACCACAACCCTCAGTCTGGTCTGA
Found at i:16935893 original size:356 final size:356
Alignment explanation
Indices: 16935237--16935893 Score: 856
Period size: 356 Copynumber: 1.8 Consensus size: 356
16935227 AGTCTCGCTA
* * *
16935237 CCACAACCCTCAATTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAA
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAA
* * ** * * * *
16935302 GAAACGGGGCGTGCTGGCGCTCAGCCGGCCGGAGAGGCAGAATTCGTAAGCCAGGGATTGGCCCG
66 GAAACGGAGCGTGCAGGCGCTCAGCAAGCCGAAGAGGCAGAATTCGGAAGCCAGGGATCGACCCG
* * * * * ** *
16935367 ATCCCTCCTGCGTGCTGCAGATCCTACTGCCGTAAGCCTCGGTCCGGTTTGATCTTAGACTAGGA
131 ATCCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAAACTAGGA
* * * * **
16935432 ATGAACTCTGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG
196 ATGAACTCTGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
** * * *
16935497 TGCGGGCACTCAGCCGACCGGAGAGGCATAATGTGTAAGCCTGGGATCAGCCCGATCCCCTTCTG
261 AACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCTGGGATCAGCCCGATCCCCTTCTG
16935562 CCTGCTGCCTATCCCGCTACCGGTCCTGCTG
326 CCTGCTGCCTATCCCGCTACCGGTCCTGCTG
* * *
16935593 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAA
*
16935658 GAAAC-GAGCGTGCAGGCGCTCAGCAAGCCGAAGAGGCAGAATGT-GGAAGCCAGGTATCGACCC
66 GAAACGGAGCGTGCAGGCGCTCAGCAAGCCGAAGAGGCAGAAT-TCGGAAGCCAGGGATCGACCC
* * *
16935721 GATCCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTC-GTCCGATCCGATCTTAAACTT
130 GAT-CCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCC-TCGGTCCGATCCGATCTTAAACTA
*
16935785 GGAATGAACT-TCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCGCAAAAC
193 GGAATGAACTCT-GTATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
* * * *
16935848 GAGCGAACGGGCGCTTAGCCGGCCAGAGAGGTAGAATGCGTAAGCC
256 GAGCGAACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCC
16935894 GAGGACCGAC
Statistics
Matches: 254, Mismatches: 42, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
355 51 0.20
356 200 0.79
357 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (356 bp):
CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAA
GAAACGGAGCGTGCAGGCGCTCAGCAAGCCGAAGAGGCAGAATTCGGAAGCCAGGGATCGACCCG
ATCCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAAACTAGGA
ATGAACTCTGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
AACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCTGGGATCAGCCCGATCCCCTTCTG
CCTGCTGCCTATCCCGCTACCGGTCCTGCTG
Found at i:16935932 original size:185 final size:185
Alignment explanation
Indices: 16935616--16935986 Score: 480
Period size: 185 Copynumber: 2.0 Consensus size: 185
16935606 TCCGACTGGG
* * **
16935616 GCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAACAGGCGCTCAG
* * * *
16935681 CAAGCCGAAGAGGCAGAATGTGGAAGCCAGGTATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
66 CAAGCCGAAGAGGCAGAATGCGGAAGCCAGGTACCGACCCAATCCCCCCCTGCATGCTGCCGATC
* * *
16935746 CTGCTACCGCAACCCTTCG-TCCGATCCGATCTTAAACTTGGAATGAACTTCGTAT
131 CTGCTACCACAACCC-TCGATCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
* * *
16935801 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGCAAAACGAGCGAACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAACAGGCGCTCAG
** * * *
16935866 CCGGCC-AGAGAGGTAGAATGCGTAAGCCGAGG-ACCGACCCTAAT-CCCCCCTGCATGCTGTCG
66 CAAGCCGA-AGAGGCAGAATGCGGAAGCC-AGGTACCGACCC-AATCCCCCCCTGCATGCTGCCG
* * *
16935928 ATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
128 ATCCTGCTACCACAACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
16935986 G
1 G
16935987 ACTAAGTCAA
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 4 0.03
185 151 0.94
186 5 0.03
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGAACAGGCGCTCAG
CAAGCCGAAGAGGCAGAATGCGGAAGCCAGGTACCGACCCAATCCCCCCCTGCATGCTGCCGATC
CTGCTACCACAACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
Found at i:16936329 original size:26 final size:26
Alignment explanation
Indices: 16936279--16936330 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936269 CGGTATGATC
* *
16936279 TTAGACTAGGAATGAACTTCGTATGG
1 TTAGACTAGGAATGAACTCCATATGG
* *
16936305 TTAGACTGGGGATGAACTCCATATGG
1 TTAGACTAGGAATGAACTCCATATGG
16936331 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:16937497 original size:158 final size:157
Alignment explanation
Indices: 16937017--16937510 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 157
16937007 ACTCCACATG
* * * * * *
16937017 CTTAGACTTGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * *
16937082 CAGTCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGATCCCCCCCTGCTTGCT-TCGATCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGT-CCCCCCTGCATGCTGTCGATCC
* * * *
16937146 TACTGCCGCAACCCTCGGTCCAGTCTAAT
130 TGCTGCCACAACCCTCGGTCCGGTC-GAT
* *
16937175 CTTAGACTGGGAATGAACTCCATAT-CCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCATATGCC-TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * * * * *
16937239 CCGGCCGAATAGGCATAATGTGCAAGC-CGAGATCTG-CCCGGTCCCCCTCTGCGTGGTGTCGGT
65 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATC-GACCCGGTCCCCC-CTGCATGCTGTCGAT
* * **
16937302 CCTGCTGGCACAACCCTCGGTCCGGCTGGGG
128 CCTGCTGCCACAACCCTCGGTCCGG-TCGAT
* * * * *
16937333 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTAAA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* *
16937397 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
* * ** * *
16937462 CGCTACCACAAATCTCAGTCTGGTTCGAT
130 TGCTGCCACAACCCTCGGTCCGG-TCGAT
*
16937491 CATAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
16937511 GTATGCTTAG
Statistics
Matches: 268, Mismatches: 58, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.02
157 20 0.07
158 223 0.83
159 20 0.07
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCGAT
Found at i:16937531 original size:25 final size:26
Alignment explanation
Indices: 16937493--16937542 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
16937483 GGTTCGATCA
16937493 TAGACTGGGAATGAACT-CGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
16937518 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16937543 GTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:16938039 original size:158 final size:157
Alignment explanation
Indices: 16937654--16938148 Score: 502
Period size: 158 Copynumber: 3.1 Consensus size: 157
16937644 CCGCTATCAG
*
16937654 TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * * * * * ** *
16937719 CAACCCATGAAATGAGCATGCGGGTGATCAA-CTGGTCAGAGACACAGAATGCGTAAGCCGGGGA
66 CAACCCATGAAATGAGCGTGCGGGCGCT-AAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA
**
16937783 T-CGACCTGGTCCCCCCTGCGTGCTGTCGA
130 TCCG-CCTGGT-CCCCCTGCGTGCTACCGA
* * * ** * *
16937812 TCCTGCTGCCGA-AA-CCTCGATTCGGTCT-GATCTTAGAC-TGGGAATGAATTCTGTATGCATA
1 TCCTGCTGCC-ACAACCCTCG-GTCCGACTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCTA
* * * * * * *
16937873 AGTCAACCCACGAAATGAGTGTGCTGGCGCTAAGCCGATCGGAGAGGCATAATGCGGATG-CGGG
63 AGCCAACCCATGAAATGAGCGTGCGGGCGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGG
*
16937937 GATCCGCCTGGTCCCCCTTTGCGTGCTACCGG
128 GATCCGCCTGGTCCCCC--TGCGTGCTACCGA
* **
16937969 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * *
16938034 CAACCCATGAAATGGGCGTGCGGGCGCTCAGCC-AGTCGGAGAGGTAGAATGCGCAAGCCGGGGA
66 CAACCCATGAAATGAGCGTGCGGGCGCTAAGCCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * *
16938098 TCGGCCCGGTCGCCCCTGCGTGCTACCAA
130 TCCGCCTGGTC-CCCCTGCGTGCTACCGA
* *
16938127 TCATGCTGTCACAACCCTCGGT
1 TCCTGCTGCCACAACCCTCGGT
16938149 TCGATCCGAT
Statistics
Matches: 271, Mismatches: 52, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
155 5 0.02
156 17 0.06
157 103 0.38
158 125 0.46
159 17 0.06
160 4 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGGGCGCTAAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CCGCCTGGTCCCCCTGCGTGCTACCGA
Found at i:16938900 original size:26 final size:26
Alignment explanation
Indices: 16938863--16938914 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16938853 GCTCAAAATG
*
16938863 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16938889 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16938915 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16939687 original size:26 final size:26
Alignment explanation
Indices: 16939658--16939710 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939648 CTGGTCCAAT
*
16939658 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* * *
16939684 CTTAGAGTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
16939710 C
1 C
16939711 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:16940064 original size:170 final size:169
Alignment explanation
Indices: 16939699--16940474 Score: 518
Period size: 170 Copynumber: 4.7 Consensus size: 169
16939689 AGTGGGGATC
* * * ** * *
16939699 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAAAGGCAT
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAG
* * * * * * *
16939764 AATGCGCAAGCCGGGGATCAATCGGGTCCCTCTCTGCGTGCTATCGATCCCGCTGCCAGTCCTGC
66 AATGCGCAAGCC-GGGATCGACCTGGTCCC-CCCTACGTGCTATCGATCCTGCTGCCAGTCCTAC
* * * ****
16939829 TGCCACAACCTTCGGTCCTGTTGGGGCTTAGACATAGAATG
129 TACCACAACCCTCGGTCCGGTCCAAGCTTAGACATAGAATG
* * * *
16939870 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCTTGCGAGCCCTCAGCCGACTGGAGAGGCAG
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAG
** **
16939935 AATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTACGTGCTATCGATCCTTTTGCTGGTCCTACT
66 AATGCGCAAGCC-GGGATCGACCTGGTCCCCCCTACGTGCTATCGATCCTGCTGCCAGTCCTACT
** *
16940000 ACCGTAACCCTCGGTCCGGTCCAATCTTAGAC-TAGGAATG
130 ACCACAACCCTCGGTCCGGTCCAAGCTTAGACATA-GAATG
* * *
16940040 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCC-AATCGGAGAGGTA
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACT-GGAGAGGCA
* * * *
16940104 GAATGAGCAAGCCGGAGACCG-GCTCGATCCCCCCTACGTGCTATCGATCCTGCT----G-----
65 GAATGCGCAAGCCGG-GATCGACCT-GGTCCCCCCTACGTGCTATCGATCCTGCTGCCAGTCCTA
* ** * * *
16940159 ---CC-CAACCCTTGGT-CGGTCTGATCTTACAC-TGTGAATG
128 CTACCACAACCCTCGGTCCGGTCCAAGCTTAGACAT-AGAATG
* * * * * * * * *
16940196 AACTCTGTATGACTAAGTCAACCCACGAAACGAGCATGCGGACGCTGAGCCGACCGAAAAGGCAT
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAG
* * * * *
16940261 AATGTGCCAGCCAGGGATGGGCCTGGTCCCCCTCTGCGTGCTATCG-----G-T-CCAG-----C
66 AATGCGCAAGCC-GGGATCGACCTGGTCCCCC-CTACGTGCTATCGATCCTGCTGCCAGTCCTAC
* ** *** *
16940314 TGCCACAACCCTCGGTCC-AACTGGGGCTTAGACATGGAATG
129 TACCACAACCCTCGGTCCGGTC-CAAGCTTAGACATAGAATG
* * * * * *
16940355 AACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTGCGGGCGCTCAGCCAACCGGAGAGGCA
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGA-GCATGCGGGCGCTCAGCCGACTGGAGAGGCA
* * * * * *
16940419 GAATGCGCAAGCGGGGATCGGCCCGGGCCCCCCTGCGTGCTATCGATCCTACTGCC
65 GAATGCGCAAGCCGGGATCGACCTGGTCCCCCCTACGTGCTATCGATCCTGCTGCC
16940475 GCAACCCTCA
Statistics
Matches: 482, Mismatches: 96, Indels: 61
0.75 0.15 0.10
Matches are distributed among these distances:
151 1 0.00
152 1 0.00
154 1 0.00
156 92 0.19
157 41 0.09
158 30 0.06
159 72 0.15
160 1 0.00
163 1 0.00
164 2 0.00
166 1 0.00
169 8 0.02
170 150 0.31
171 81 0.17
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (169 bp):
AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAG
AATGCGCAAGCCGGGATCGACCTGGTCCCCCCTACGTGCTATCGATCCTGCTGCCAGTCCTACTA
CCACAACCCTCGGTCCGGTCCAAGCTTAGACATAGAATG
Found at i:16940502 original size:157 final size:157
Alignment explanation
Indices: 16940005--16940522 Score: 546
Period size: 156 Copynumber: 3.3 Consensus size: 157
16939995 CTACTACCGT
** **
16940005 AACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
16940070 CGAGCATGCGGGCGCTCAGCCAATCGGAGAGGTAGAATGAGCAAGCCGGAGACCGGCTCGATCCC
66 CGAGCATGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCC
* *
16940135 CCCTACGTGCTATCGATCCTGCTGCCC
131 CCCTGCGTGCTATCGATCCTACTGCCC
* ** * * *
16940162 AACCCTTGGT-CGGTCTGATCTTACACT-GTGAATGAACTCTGTATGACTAAGTCAACCCACGAA
1 AACCCTCGGTCCAATCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * * * * * *
16940225 ACGAGCATGCGGACGCTGAGCCGACCGAAAAGGCATAATGTGCCAGCCAGGGATGGGCCTGGTCC
65 ACGAGCATGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCC
*
16940290 CCCTCTGCGTGCTATCGGTCC-AGCTGCCAC
130 CCC-CTGCGTGCTATCGATCCTA-CTGCC-C
** * * *
16940320 AACCCTCGGTCCAA-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCGGTCCAATCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
16940383 AA-TAGGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGG
64 AACGA-GCATGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGT
16940446 CCCCCCTGCGTGCTATCGATCCTACTGCCGC
128 CCCCCCTGCGTGCTATCGATCCTACTGCC-C
* *
16940477 AACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATG
1 AACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTATG
16940523 GTTAGACTGG
Statistics
Matches: 291, Mismatches: 58, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
155 1 0.00
156 97 0.33
157 88 0.30
158 33 0.11
159 71 0.24
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
AACCCTCGGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCATGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCC
CCCTGCGTGCTATCGATCCTACTGCCC
Found at i:16940534 original size:26 final size:26
Alignment explanation
Indices: 16940498--16940548 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16940488 CAATCTGATC
16940498 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
16940524 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16940549 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16941268 original size:26 final size:26
Alignment explanation
Indices: 16941230--16941282 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941220 GGCTCAAACT
*
16941230 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16941256 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16941282 C
1 C
16941283 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16942673 original size:26 final size:26
Alignment explanation
Indices: 16942637--16942689 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16942627 CCAGTTTGAT
16942637 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16942663 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16942689 C
1 C
16942690 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16942970 original size:196 final size:197
Alignment explanation
Indices: 16942631--16942994 Score: 477
Period size: 196 Copynumber: 1.9 Consensus size: 197
16942621 CTCAGTCCAG
* *
16942631 TTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGT
1 TTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
16942696 CAACCCACGAAACGAGCGTGTGGGTGCTCAGTCAGTCGGAGAGGCAAAATGCGTAAGTCAGGGAT
66 CAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCGAAGAGCCAAAATGCGCAAGTCAGGGAC
16942761 CGGCACAGTCCCCCC-TACGTGCAAACGATCCTACTGCTAGTCTTGCTACCGCAAGCCTCGGTCT
131 CGGCACAGTCCCCCCTTACGTGCAAACGATCCTACTGCTAGTCTTGCTACCGCAAGCCTCGGTCT
16942825 GA
196 GA
* * *
16942827 TTTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAG
1 TTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* *
16942891 CCAACCCACGAAACAAGCGTGCGGGTGCTCAGCC-GACCGAAGAGCCAGAATGCGCAAGT-TGAG
65 CCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAG-CCGAAGAGCCAAAATGCGCAAGTCAG-G
* * * * *
16942954 GACCGATC-CGGTCCCCCCTTACGTGCTATCGATCCTGCTGC
128 GACCG-GCACAGTCCCCCCTTACGTGCAAACGATCCTACTGC
16942995 CTGCAACCCT
Statistics
Matches: 143, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
195 2 0.01
196 120 0.84
197 21 0.15
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (197 bp):
TTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCGAAGAGCCAAAATGCGCAAGTCAGGGAC
CGGCACAGTCCCCCCTTACGTGCAAACGATCCTACTGCTAGTCTTGCTACCGCAAGCCTCGGTCT
GA
Found at i:16943384 original size:26 final size:26
Alignment explanation
Indices: 16943334--16943386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943324 CTAGTCTGAT
**
16943334 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16943360 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16943386 C
1 C
16943387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16943730 original size:26 final size:26
Alignment explanation
Indices: 16943701--16943753 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943691 CCGGTTCGAT
* *
16943701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
**
16943727 CTTAAACTGGGGGTGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
16943753 C
1 C
16943754 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16944467 original size:26 final size:26
Alignment explanation
Indices: 16944429--16944481 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16944419 TCGATCTGAT
16944429 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16944455 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
16944481 C
1 C
16944482 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16944691 original size:525 final size:513
Alignment explanation
Indices: 16943835--16944892 Score: 1238
Period size: 525 Copynumber: 2.0 Consensus size: 513
16943825 TAAGGATCGA
* * * * *
16943835 CCCGGTCCCCCCTGCGTGCTGTTGATCCTGTCACTGGTCCTGCTACTGCAACCCTCGATCTGGTT
1 CCCGATCCCCCCTGCGTGCTGTTGATCCTCTCACTGGTCCTGCTACCGCAACCCTCGATCTCGAT
* * *
16943900 CAATCTTTGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
66 CAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
* * ** *
16943965 ACCCACGAAACGAACGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGACCG
131 ACCCACGAAACGAACGTGCGGGCACTCAGCCGATCGGAAAGGCAGAATGCCCAAGTCGGGAACCG
* * * * *
16944030 ACTCGATCCCCCATGCGTGCTGTCGATCCTGCTACCATAACCCTCAATCTGGTCCGATCTTAGAG
196 ACTCGATCCCCCATACGTGCTGTCGATCCTGCTACCACAACCCTCAATCCGATCCGATCTTAGAC
* * * *
16944095 TGGGAATGAATTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCTGACCAG
261 TAGGAATGAATTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCAGACCAG
* **
16944160 AGAGGCATAATGCCCAAGTCGGGGATCAGCCT-GGTCCCCCTCTACGTGCTGTCGATCCCACTGC
326 AGAGGCATAATGACCAAGTCGGGGATC-GCCTCAAT-CCCC-CT-C-TGC-GT-G---CCA-T--
* * * * * *
16944224 CGGTCCTGCTGCCACAACCCTCGGTTC-GACTGGGGCTTAGGCATGGAATTAACTCCGTATGCCT
378 CGGTCCCGCTGCCACAACCCTCGATCCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * ** * *
16944288 GAGCCAACCCATGAAACGAGCATGCGAGCGCTCAACC-GATTGAAGAGGTAGAATGCACAAGTCG
442 AAGCCAACCCACGAAACGAACATGCGAGCGCTCAACCAG-TCAAAGAGGCAGAATGCACAAGCCG
16944352 GGGATCAG
506 GGGATCAG
* * *
16944360 CCCGATCCCCCCTGCGTGCTGTTGATCCTACT-ATTGGTCCTGCTACCGCAACCCTTGGT-TCGA
1 CCCGATCCCCCCTGCGTGCTGTTGATCCT-CTCACTGGTCCTGCTACCGCAACCCTCGATCTCGA
* *
16944423 TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
65 TC-AATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGC
* *
16944488 CAACCCATGAAACGAGCGTGCGGG-AGCTCAGCCGATCGGAAAGGCAGAATGCCCAAGTCGGGAA
129 CAACCCACGAAACGAACGTGCGGGCA-CTCAGCCGATCGGAAAGGCAGAATGCCCAAGTCGGGAA
* * * **
16944552 CCGGC-CTGATCTTCCC-TACGTGCTGTCGATCCTGCTACTACAACCCTCGGTCCGATCCGATCT
193 CCGACTC-GATC-CCCCATACGTGCTGTCGATCCTGCTACCACAACCCTCAATCCGATCCGATCT
* * * *
16944615 TAGACTAGGAATGAACTT-TGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTGAGTC
256 TAGACTAGGAATGAA-TTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAG-C
** * *
16944679 AG-CC-GAAGAGGCATAATGAGTAAGTCGGGGATCGGCTCAATCCCCCTCTGCGTGCTATCGGTC
319 AGACCAG-AGAGGCATAATGACCAAGTCGGGGATCGCCTCAATCCCCCTCTGCGTGCCATCGGTC
16944742 CCGCTGCCACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
383 CCGCTGCCACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
16944807 ACCCACGAAACGAACGTGCGGGTGCTCAACCAGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCG
448 ACCCACGAAACGAACATGCGAGCGCTCAACCAGTCAAAGAGGCAGAATGCACAAGCCGGGGATCA
16944872 G
513 G
* * *
16944873 CCTGATCCCTCCTGCATGCT
1 CCCGATCCCCCCTGCGTGCT
16944893 ATGGATGCTA
Statistics
Matches: 456, Mismatches: 66, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
513 130 0.29
514 3 0.01
515 1 0.00
516 2 0.00
519 1 0.00
520 2 0.00
521 3 0.01
522 1 0.00
523 2 0.00
524 14 0.03
525 289 0.63
526 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (513 bp):
CCCGATCCCCCCTGCGTGCTGTTGATCCTCTCACTGGTCCTGCTACCGCAACCCTCGATCTCGAT
CAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
ACCCACGAAACGAACGTGCGGGCACTCAGCCGATCGGAAAGGCAGAATGCCCAAGTCGGGAACCG
ACTCGATCCCCCATACGTGCTGTCGATCCTGCTACCACAACCCTCAATCCGATCCGATCTTAGAC
TAGGAATGAATTCCGTACGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCAGACCAG
AGAGGCATAATGACCAAGTCGGGGATCGCCTCAATCCCCCTCTGCGTGCCATCGGTCCCGCTGCC
ACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGAACATGCGAGCGCTCAACCAGTCAAAGAGGCAGAATGCACAAGCCGGGGATCAG
Found at i:16944802 original size:159 final size:158
Alignment explanation
Indices: 16944454--16944948 Score: 462
Period size: 159 Copynumber: 3.1 Consensus size: 158
16944444 AACTCCATAT
*
16944454 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * ** *
16944519 CCGATCGGAA-AGGCAGAATGCCCAAGTCGGGAACCGGCCTGATCTTCCCTACGTGCTGTCGATC
66 CC-AGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAATCCCCCCTACGTGCTATCGATC
* * *
16944583 CTGCTACTACAACCCTCGGTCCGATCCGA
130 CCGCTACCACAACCCTCGATCCGATCCGA
* ** * * * *
16944612 TCTTAGAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * *
16944676 GTCAGCCGAAGAGGCATAATGAGTAAGTCGGGGATCGG-CTCAATCCCCCTCTGCGTGCTATCGG
65 GCCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCT-AATCCCCC-CTACGTGCTATCGA
* * *
16944740 TCCCGCTGCCACAACCCTCGATCCGGAT-GGG
128 TCCCGCTACCACAACCCTCGATCC-GATCCGA
* * * *
16944771 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
16944836 CCAGTCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCTCCTGCATGCTATGGATGC
66 CCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAATCCCCCCTACGTGCTATCGATCC
** * * *
16944901 TACTA-CGCAACCCTCGATCCGGTTCGA
131 CGCTACCACAACCCTCGATCCGATCCGA
*
16944928 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
16944949 TGAATGCTTA
Statistics
Matches: 267, Mismatches: 61, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 41 0.15
158 97 0.36
159 120 0.45
160 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAATCCCCCCTACGTGCTATCGATCC
CGCTACCACAACCCTCGATCCGATCCGA
Found at i:16944970 original size:26 final size:26
Alignment explanation
Indices: 16944929--16944981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16944919 CCGGTTCGAT
16944929 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCTGAATG
*
16944955 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGAATG
16944981 C
1 C
16944982 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:16945631 original size:26 final size:26
Alignment explanation
Indices: 16945593--16945645 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16945583 GGCTCAAACT
*
16945593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
16945619 CTTAGACAT-GGAATCAACTCTGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
16945645 C
1 C
16945646 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16946476 original size:158 final size:156
Alignment explanation
Indices: 16945984--16946476 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 156
16945974 GCTTGGACAT
* * * * *
16945984 GGAATGAACTTCGTATGCCTAAGGCAACCTATGAAATGAGCGTGCGAGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCG-GCACTCAGTCGATCGGAG
* * * *
16946049 AGGTAGAATGCGTAAGTCGGGGACCAGCCCATTCCCCCCTATGTGCTGTCGATCCTGCTGCCGCA
65 AGGCAGAATGCGTAAGTCGGGGATCAGCCCGTT-CCCCCTATGTGCTGTCGATCCTGCTGCCACA
* * * *
16946114 ACCCTTGGTCTGGTTCGATCTTAGACTG
129 ACCCTTGGTCCGATCCGATCTTAGACTA
* ** * * * *
16946142 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAGCCCACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGCACTCAGTCGATCGGAG
* * * ** * * ** *
16946207 AGGCATAATGCGTAAGCCAGGGATTGGCCCGATCCCCCTTTGCGTGCTACCGGTCCTGCTGCCAC
65 AGGCAGAATGCGTAAGTCGGGGATCAGCCCGTTCCCCCTAT--GTGCTGTCGATCCTGCTGCCAC
* * **
16946272 AACCCTTGATCCGA-CTGGGGCTTAGAC-A
128 AACCCTTGGTCCGATC-CGATCTTAGACTA
* * *
16946300 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGTCACTCAGTCGATCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGG-CACTCAGTCGATCGGA
** * * *
16946365 GAGGCAGAATGCACAAGTCGGGGATCAGCCTGGTTCCCCCTATGTGCTGTCGATCCCGCTGCCAT
64 GAGGCAGAATGCGTAAGTCGGGGATCAGCC-CGTTCCCCCTATGTGCTGTCGATCCTGCTGCCAC
* *
16946430 AACCCTCGGTCCGATCCAATCTTAGACTA
128 AACCCTTGGTCCGATCCGATCTTAGACTA
16946459 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16946477 TTAGACTGGT
Statistics
Matches: 261, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 7 0.03
158 131 0.50
159 114 0.44
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGCACTCAGTCGATCGGAGA
GGCAGAATGCGTAAGTCGGGGATCAGCCCGTTCCCCCTATGTGCTGTCGATCCTGCTGCCACAAC
CCTTGGTCCGATCCGATCTTAGACTA
Found at i:16946479 original size:26 final size:26
Alignment explanation
Indices: 16946450--16946502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946440 CCGATCCAAT
*
16946450 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCATATG
*
16946476 CTTAGACTGGTGATGAACTCCATATG
1 CTTAGACTGGTAATGAACTCCATATG
16946502 C
1 C
16946503 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCATATG
Found at i:16946687 original size:26 final size:26
Alignment explanation
Indices: 16946658--16946710 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946648 CCAGTCCGAT
*
16946658 CTTAGAC-TAAGAATTAACTCCGTATG
1 CTTAGACAT-AGAATGAACTCCGTATG
*
16946684 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
16946710 C
1 C
16946711 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:16947543 original size:26 final size:26
Alignment explanation
Indices: 16947514--16947563 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16947504 CTGGTCCGAT
16947514 CTTAGAC-TGGGAATGAACTCCGTACA
1 CTTAGACAT-GGAATGAACTCCGTACA
16947540 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
16947564 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACA
Found at i:16948900 original size:159 final size:159
Alignment explanation
Indices: 16948577--16948922 Score: 410
Period size: 159 Copynumber: 2.2 Consensus size: 159
16948567 AACTCCGTAT
* * * *
16948577 GCTTAGACATGCAATGAACTT-CGTATGCGTAAGCCAACCCATGGAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAA-TTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * *
16948641 GCCAGTTAGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCTCTGCGTGCTACCGGT
65 GCCAGTCAGAAAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGAT
** * * * *
16948706 CCCGTTGCCACATCCCTCAGTCTGGCTTGG
130 CCCACTGCCACAACCCTCAGTCCGACTTGA
* * *
16948736 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
16948801 CCGGTCAGAAAGGTAAAATGC-CTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACTGAT
66 CCAGTCAGAAAGGCAAAATGCGC-AAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGAT
* * *
16948865 CCTACTGCCGCAACCCTCAGTCCGATTTGA
130 CCCACTGCCACAACCCTCAGTCCGACTTGA
* *
16948895 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAATTCCGTATGC
16948923 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 4 0.03
159 153 0.97
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGTCAGAAAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
CCACTGCCACAACCCTCAGTCCGACTTGA
Found at i:16948925 original size:26 final size:26
Alignment explanation
Indices: 16948896--16948948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16948886 CCGATTTGAT
*
16948896 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16948922 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16948948 C
1 C
16948949 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16949121 original size:26 final size:26
Alignment explanation
Indices: 16949092--16949144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16949082 CCGGTTCGAT
*
16949092 CTTAGAC-TAAGAATGAACTTCGTATG
1 CTTAGACAT-AGAATGAACTCCGTATG
*
16949118 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
16949144 C
1 C
16949145 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:16950158 original size:26 final size:26
Alignment explanation
Indices: 16950129--16950181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16950119 CCGGTTCGAT
*
16950129 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16950155 CTTAGACTGGGCATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16950181 C
1 C
16950182 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16950443 original size:343 final size:343
Alignment explanation
Indices: 16949812--16950574 Score: 1058
Period size: 343 Copynumber: 2.2 Consensus size: 343
16949802 GGCTCAAACT
* * * * *
16949812 CTTAGACTAGGAATGAACTCTGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
** * * * *
16949877 CGACCGAAGAGGCAGAACGCACAAGCCGGGGATCGACCTGGTCCCCCTCTACGTACTGTCGATCC
66 CGGTCGGAGAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTGTCGATCC
16949942 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** *** *
16950007 CACATGAAATGGGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG
196 CACACGAAACAGGCGTACGGGCACTCAGCCAACCCGAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * * *
16950072 CTTGGTCCCTCCTGTGTGCTATCGATCTTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGATT
261 CTTGGTCCCCCCTGCGTGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACT
*
16950137 GGGAATGAACTCCGTATG
326 GGAAATGAACTCCGTATG
* * * *
16950155 CTTAGACTGGGCATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
16950220 CGGTCGGAGAGGCAGAATACACAGGCTGGGGATCGACCCGATCCCCCTCTACGTGCTGTTGGTCC
66 CGGTCGGAGAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTGTCGATCC
* * *
16950285 CGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAA
131 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
16950350 CACACGAAACAGGCGTGCGGGCACTCAGCCAACCCGAGAGGTAGAATGTGTAAGCCGGGGATCGG
196 CACACGAAACAGGCGTACGGGCACTCAGCCAACCCGAGAGGCAGAATGCGCAAGCCAGGGATCGG
* *
16950415 TTTGGTCCCCCCTGCGTGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACT
261 CTTGGTCCCCCCTGCGTGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACT
16950480 GGAAATGAACTCCGTATG
326 GGAAATGAACTCCGTATG
* * * ** * * * *
16950498 CTTTGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATGCGGTCGCTCTGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
16950563 CGGTCGGAGAGG
66 CGGTCGGAGAGG
16950575 TCGGCTAGAG
Statistics
Matches: 365, Mismatches: 55, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
343 365 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAACACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTGTCGATCC
CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CACACGAAACAGGCGTACGGGCACTCAGCCAACCCGAGAGGCAGAATGCGCAAGCCAGGGATCGG
CTTGGTCCCCCCTGCGTGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACT
GGAAATGAACTCCGTATG
Found at i:16950987 original size:26 final size:26
Alignment explanation
Indices: 16950958--16951010 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16950948 CCGGTCTGAT
16950958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16950984 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16951010 C
1 C
16951011 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16951525 original size:159 final size:158
Alignment explanation
Indices: 16951160--16951528 Score: 420
Period size: 158 Copynumber: 2.3 Consensus size: 158
16951150 CCCTCAGTCT
***
16951160 GACTAGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
1 GACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
* * *
16951225 CACTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGACTGGCCTGATCCCCCCTGCGTGCTA
66 CACTCAACCGACCGGAGAGGCAGAATACACAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTA
* * ** *
16951290 TCGATTCTGCTGCCATAACCCTCGGTCC
131 TCGATCCCGCAACCATAACCCTCGATCC
* * ** *
16951318 G-GTCCGATCTTAGAC-TGAGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCG
1 GACT-AGGGCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCG
** * * * * * ** *
16951381 GGTGCTGAGCCGGCCGGAGAGGCATAATACGCAAGCTGGGGATTGGCCCGATCCCCCTCTACGTG
64 GGCACTCAACCGACCGGAGAGGCAGAATACACAAGCCAGGGACTGGCCCGATCCCCC-CTACGTG
16951446 CTATCTG-TCCCGCAACCATAACCCTCGATCC
128 CTATC-GATCCCGCAACCATAACCCTCGATCC
* * *
16951477 GACTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAA
1 GACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
16951529 CGGATGGTAG
Statistics
Matches: 172, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 95 0.55
159 70 0.41
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
CACTCAACCGACCGGAGAGGCAGAATACACAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTA
TCGATCCCGCAACCATAACCCTCGATCC
Found at i:16952085 original size:25 final size:26
Alignment explanation
Indices: 16952056--16952107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952046 CCAGTCCGAT
16952056 CTTAGACT-GAAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
* *
16952081 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
16952107 C
1 C
16952108 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:16952302 original size:26 final size:26
Alignment explanation
Indices: 16952264--16952316 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952254 TCGGTTCGAT
*
16952264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
16952290 CTTAGACAT-GGAATCAACTCGGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
16952316 C
1 C
16952317 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16952985 original size:26 final size:26
Alignment explanation
Indices: 16952949--16952999 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952939 CCGATCCAAT
* *
16952949 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16952975 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16953000 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16953104 original size:184 final size:184
Alignment explanation
Indices: 16952681--16953218 Score: 429
Period size: 184 Copynumber: 2.9 Consensus size: 184
16952671 CTGACCGAAG
* * *** * *** **
16952681 AGGCAGAATACGCAAGTTGGGGATCGGTCCGATCCCCCCTATGTGCTACAAATCCTGCTACCGCA
1 AGGCAGAATGCGCAAGCTGGGGATCAACCCAATCCCCCCTGCATGCTACCGATCCTGCTACCGCA
* *
16952746 ACCCTCGGTCCGGTCCAGTCTTAGACTGGGAATGCACTCTGTATGCTTAGACTGGGGATGAACTC
66 ACCCTCGGTCCGATCCAATCTTAGACTGGGAATGCACTCTGTATGCTTAGACTGGGGATGAACTC
* * * * * * * * * *
16952811 TGTCTGAGTATGTCAACACATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGAAG
131 CGTATGACTAAGTCAACACATAAAACGAGCGTGCGGGCACCCAGCCGGTCAAAA
* *** ** ** * ** *
16952865 AGGTAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCTTCTGCGTGCTGTCGATCCTGCTGCCGCA
1 AGGCAGAATGCGCAAGCTGGGGATCAACCCAATCCCCCCTGCATGCTACCGATCCTGCTACCGCA
* *
16952930 TCCCTCGGTCCGATCCAATCTTAGACTGGGAATG-AGCT-TCGTATGCTTAGATTGGGGATGAAC
66 ACCCTCGGTCCGATCCAATCTTAGACTGGGAATGCA-CTCT-GTATGCTTAGACTGGGGATGAAC
*
16952993 TCCGTAT-ACCTAAGTCAACCCATAAAACGAGCGTGCGGGCACCCAGCCGGTCAAAA
129 TCCGTATGA-CTAAGTCAACACATAAAACGAGCGTGCGGGCACCCAGCCGGTCAAAA
* *
16953049 AGGCAGAATGCGTAAG-TCGGGGATCAACCCAATCCCCCCTTCATGCTACCGATCCTACTGTCGG
1 AGGCAGAATGCGCAAGCT-GGGGATCAACCCAATCCCCCCTGCATGCTACCGAT-C--C--T--G
* * ** * *
16953113 TCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC
58 -----CTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGCACTCTGTATGCTTAGAC
* * * * *
16953178 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
118 -TGGGGATGAACTCCGTATGACTAAGTCAACACATAAAACGA
16953219 ACGCGAAAGT
Statistics
Matches: 279, Mismatches: 55, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
183 4 0.01
184 186 0.67
185 1 0.00
187 1 0.00
189 1 0.00
191 1 0.00
196 82 0.29
197 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
AGGCAGAATGCGCAAGCTGGGGATCAACCCAATCCCCCCTGCATGCTACCGATCCTGCTACCGCA
ACCCTCGGTCCGATCCAATCTTAGACTGGGAATGCACTCTGTATGCTTAGACTGGGGATGAACTC
CGTATGACTAAGTCAACACATAAAACGAGCGTGCGGGCACCCAGCCGGTCAAAA
Found at i:16953174 original size:26 final size:26
Alignment explanation
Indices: 16953145--16953197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953135 CTGGTCTGAT
*
16953145 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16953171 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16953197 C
1 C
16953198 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16953832 original size:157 final size:157
Alignment explanation
Indices: 16953295--16953894 Score: 536
Period size: 158 Copynumber: 3.8 Consensus size: 157
16953285 CCGATCCAAT
* * * * *
16953295 CTTAGACTGGGAATGAACT--TTATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCGCTGA-C
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
** * * * * * * *
16953357 TCGGCCGGAGAGGCCTAATG-AGTAAGTCGGGGATTGGCCCAGTCCCCCTCTGCGTGCTGCTGGT
66 -CGGCCGGAGAGGCAGAATGCA-CAAGCCGGGGATCGGCCCGGT-CCCCTCTACGTGCTACTGAT
* ** *
16953421 CCCGCTGTCACAACCCTCTTTCTGGTTGGG
128 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
* * * * *
16953451 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGTTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
16953515 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGCGATCAGCCCGGTCCCCCCTACGTGCT-TTCAATC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTACT-GATC
* * * * **
16953579 CTGCTGCTACAACCCTCGGTCCGGTCCGAT
129 CCGCTGCCACAACCCTCGGTCTGG-CTGGG
* * * * *
16953609 CTTAGACTGGGAATGAACTTCGC-ATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTGAG
1 CTTAGACTGGGAATGAAC-TCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * * *
16953673 CCGATCGGAGAGGCATAATGCACAAGTCGGGGATCGGCACGGTCCCCTCTACGTGCTACTGATCC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTACTGATCC
* *
16953738 CGCTACCACAACCCTCGGTCTAGCTGGG
130 CGCTGCCACAACCCTCGGTCTGGCTGGG
*
16953766 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCA
* * * * * * *
16953829 GCCGGTCGGAAAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCACC-CTGCGTGCTACCGAT
64 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCC-CCTCTACGTGCTACTGAT
16953893 CC
128 CC
16953895 TACTGTTGCA
Statistics
Matches: 352, Mismatches: 78, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
156 22 0.06
157 139 0.39
158 186 0.53
159 5 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTACTGATCCC
GCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:16953833 original size:315 final size:315
Alignment explanation
Indices: 16953231--16953944 Score: 873
Period size: 315 Copynumber: 2.3 Consensus size: 315
16953221 GCGAAAGTTG
* * * * * * * * * *
16953231 GGGATCGGCTCGGTCC-CCCTGCATGCTGCCGATCCTGCTACTACAACCCTCAGTCCGATCCAAT
1 GGGATCAGCCCGGTCCACCCTACGTGCTACCAATCCTGCTGCTACAACCCTCGGTCCGGTCCGAT
* *
16953295 CTTAGACTGGGAATGAACTT-TATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCGCTGACTC
66 CTTAGACTGGGAATGAACTTCCATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTGACTC
* * * * * * * *
16953359 GGCCGGAGAGGCCTAATGAGTAAGTCGGGGATTGGCCCAGTCCCCCTCTGCGTGCTGCTGGTCCC
131 GACCGGAGAGGCATAATGAGCAAGTCGGGGATCGGCACAGTCCCCCTCTACGTGCTACTGATCCC
** ** * * *
16953424 GCTGTCACAACCCTCTTTCTGGTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
196 GCTACCACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
16953489 CACGAAACGGGCGTGCGGGTGTTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-
261 CACGAAACAGGCGTGCGGGCGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCA
* **
16953543 GGCGATCAGCCCGGTCCCCCCTACGTGCTTTCAATCCTGCTGCTACAACCCTCGGTCCGGTCCGA
1 GG-GATCAGCCCGGTCCACCCTACGTGCTACCAATCCTGCTGCTACAACCCTCGGTCCGGTCCGA
* * *
16953608 TCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTGAG
65 TCTTAGACTGGGAATGAACTTC-CATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTGA-
* *
16953673 C-CGATCGGAGAGGCATAATGCA-CAAGTCGGGGATCGGCACGGT-CCCCTCTACGTGCTACTGA
128 CTCGACCGGAGAGGCATAATG-AGCAAGTCGGGGATCGGCACAGTCCCCCTCTACGTGCTACTGA
16953735 TCCCGCTACCACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
192 TCCCGCTACCACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * *
16953800 AACCCACGAAACAGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGTAGAATGCACAAGCCA
257 AACCCACGAAACAGGCGTGCGGGCGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCA
* * * * * * * *
16953859 GGGATCGGCTCGGTCCACCCTGCGTGCTACCGATCCTACTGTTGCAAACCTCGGTCCGGTCCGAT
1 GGGATCAGCCCGGTCCACCCTACGTGCTACCAATCCTGCTGCTACAACCCTCGGTCCGGTCCGAT
* *
16953924 CTTGGACTAGGAATGAACTTC
66 CTTAGACTGGGAATGAACTTC
16953945 ATATGCTTAG
Statistics
Matches: 341, Mismatches: 54, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
312 2 0.01
313 12 0.04
314 59 0.17
315 195 0.57
316 71 0.21
317 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (315 bp):
GGGATCAGCCCGGTCCACCCTACGTGCTACCAATCCTGCTGCTACAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTTCCATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTGACTC
GACCGGAGAGGCATAATGAGCAAGTCGGGGATCGGCACAGTCCCCCTCTACGTGCTACTGATCCC
GCTACCACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACAGGCGTGCGGGCGCTCAGCCGGCCAGAAAGGCAGAATGCACAAGCCA
Found at i:16953911 original size:157 final size:155
Alignment explanation
Indices: 16953447--16953915 Score: 494
Period size: 157 Copynumber: 3.0 Consensus size: 155
16953437 TCTTTCTGGT
* *
16953447 TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGTT
1 TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGTT
* * * * * ** *
16953512 CAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGCGATCAGCCCGGTCCCCCCTACGTGCTTTCAA
65 CAGCCGGTCGGAGAGGCAGAATGCACAAGCCGG-GATCGGCACGGT-CCCCCTACGTGCTACCGA
*
16953577 TCCTGCTGCTACAACCCTCGGTCCGGTC
128 TCCTGCTGCTACAACCCTCGGTCCAGTC
* ** * * * *
16953605 CGATCTTAGAC-TGGGAATGAACTTCGC-ATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCG
1 TGGGCTTAGACAT-GGAATGAAC-TCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCG
* * * * *
16953668 TTGAGCCGATCGGAGAGGCATAATGCACAAGTCGGGGATCGGCACGGTCCCCTCTACGTGCTACT
63 TTCAGCCGGTCGGAGAGGCAGAATGCACAAG-CCGGGATCGGCACGGTCCCC-CTACGTGCTACC
* * * *
16953733 GATCCCGCTACCACAACCCTCGGTCTAG-C
126 GATCCTGCTGCTACAACCCTCGGTCCAGTC
*
16953762 TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCT
1 TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGTT
* * * *
16953827 CAGCCGGTCGGAAAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCACCCTGCGTGCTACCGA
65 CAGCCGGTCGGAGAGGCAGAATGCACAAGCC-GGGATCGGCACGGTCC-CCCTACGTGCTACCGA
* * * *
16953892 TCCTACTGTTGCAAACCTCGGTCC
128 TCCTGCTGCTACAACCCTCGGTCC
16953916 GGTCCGATCT
Statistics
Matches: 249, Mismatches: 52, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 123 0.49
158 116 0.47
159 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGTTC
AGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGATCGGCACGGTCCCCCTACGTGCTACCGATCC
TGCTGCTACAACCCTCGGTCCAGTC
Found at i:16953977 original size:26 final size:26
Alignment explanation
Indices: 16953928--16953979 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953918 TCCGATCTTG
*
16953928 GACTAGGAATGAACTTCATATGCTTA
1 GACTAGGAATGAACTCCATATGCTTA
* * *
16953954 GACTAGGGATGAACTCCGTGTGCTTA
1 GACTAGGAATGAACTCCATATGCTTA
16953980 AGTCGACCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
GACTAGGAATGAACTCCATATGCTTA
Found at i:16954685 original size:26 final size:26
Alignment explanation
Indices: 16954647--16954699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16954637 GGCTCAAAAT
*
16954647 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16954673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16954699 C
1 C
16954700 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16955175 original size:158 final size:158
Alignment explanation
Indices: 16954673--16955168 Score: 581
Period size: 159 Copynumber: 3.1 Consensus size: 158
16954663 ACTCTGTATG
*
16954673 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16954738 CGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCCTCCGTGCTGTCGATCT
66 CGGC-GGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGATCC
* * * * **
16954803 TACTACTGCAACCCTTGGTCTGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCCAGTCTGAT
* * * *
16954832 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCC-ACCCACGAAATGAGCGTGTGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
16954895 GCCGGCCGGAGAGGCATAATGCGCAAGTCAGTGATCGGCCCGATCCCTCTCTACGTGCTGTCGGT
64 GCCGG-CGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGAT
* * * **
16954960 CCCGCTGCCTCAACCCTCGGTCCA-ACTGGGG
128 CCTGCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * *
16954991 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
16955056 CGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGT-CCTCCCTGCGTGCTGTCGATCC
66 CGG-CGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGATCC
16955120 TGCTGCCGCAACCCTCGGTCCAGTCCT-AT
130 TGCTGCCGCAACCCTCGGTCCAGT-CTGAT
16955149 CTTAGAC-TGGAAATGAACTC
1 CTTAGACATGG-AATGAACTC
16955169 TTTATGCTTA
Statistics
Matches: 278, Mismatches: 50, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 60 0.22
159 209 0.75
160 6 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGTCTGAT
Found at i:16961929 original size:26 final size:26
Alignment explanation
Indices: 16961888--16961940 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16961878 CTGGTCTAAT
16961888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16961914 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16961940 C
1 C
16961941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16962297 original size:26 final size:26
Alignment explanation
Indices: 16962268--16962319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16962258 CCGATACGAT
*
16962268 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
16962294 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16962320 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16963527 original size:26 final size:26
Alignment explanation
Indices: 16963489--16963539 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16963479 GGCTCAAATT
16963489 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
16963515 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16963540 GCCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:16964009 original size:158 final size:159
Alignment explanation
Indices: 16963515--16964017 Score: 412
Period size: 160 Copynumber: 3.2 Consensus size: 159
16963505 ACTCCGTATC
* * * * ** * *
16963515 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAGGGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAG
* * *** ** * * *
16963579 CC-AAC-AGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCC-CT-TATGTGCTGTCG
65 CCGATCGA-AGAGGCAGAATGCACAAGCCAAAGATTGGCCCGATCCCCCTCTGCA--TGCTGTCG
* * *
16963640 ATCCTGCTACCACAATCCTCGGTTCGATCTGAT
127 ATCCTGCTGCCACAACCCTCGGTCCGATCTGAT
* * * *
16963673 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAGC
* ** * * * *
16963738 CGATCGAAGAGGCATAATGCGTAAGTCAAAGATTGGCCCGATCCCCCTCTGCGTGCT-ACTGGTC
66 CGATCGAAGAGGCAGAATGCACAAGCCAAAGATTGGCCCGATCCCCCTCTGCATGCTGTC-GAT-
* * * **
16963802 CCCGCTGCCACAACCCTTGGTCC-AACTGGGG
129 CCTGCTGCCACAACCCTCGGTCCGATCT-GAT
* * * *
16963833 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
16963897 CCGGTCGGAGAGGTAGAATGCACAAGCCGAGGATTGGCCCTATCCCTC-CTGCATGCTGTCGATC
65 CCGATCGAAGAGGCAGAATGCACAAGCCAAAGATTGGCCCGATCCCCCTCTGCATGCTGTCGATC
* * *
16963961 CTGCTGTCGCAACCCTCGATCCGATCTGAT
130 CTGCTGCCACAACCCTCGGTCCGATCTGAT
16963991 CTTAGACTGGGAATGAACTCCCTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
16964018 TTAGACTTGG
Statistics
Matches: 272, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 101 0.37
159 54 0.20
160 114 0.42
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAGC
CGATCGAAGAGGCAGAATGCACAAGCCAAAGATTGGCCCGATCCCCCTCTGCATGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGATCTGAT
Found at i:16964032 original size:26 final size:26
Alignment explanation
Indices: 16963991--16964043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16963981 CCGATCTGAT
16963991 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
16964017 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
16964043 C
1 C
16964044 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:16964867 original size:26 final size:26
Alignment explanation
Indices: 16964838--16964890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16964828 TCGATCTGAT
*
16964838 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16964864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16964890 C
1 C
16964891 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16965782 original size:26 final size:26
Alignment explanation
Indices: 16965744--16965796 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16965734 CTGATCCAAT
16965744 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
16965770 CTTAGACAT-GGAATTAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16965796 C
1 C
16965797 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16966024 original size:158 final size:159
Alignment explanation
Indices: 16965770--16966056 Score: 330
Period size: 158 Copynumber: 1.8 Consensus size: 159
16965760 ACTCTGTATG
* * * * *
16965770 CTTAGACATGGAATTAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCACTGAAC
* * *
16965835 TGGCCGAAGAGGCAGAATGCACAAGCTGGGGACCGACCCGGTCCCCCT-TGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCCCTCTGCGTGCTGTCGATCC
16965899 TACTACTGCAACCCTTGGTCTGGTCCGAT
131 TACTACTGCAACCCTTGGTCTGGTCCGAT
* *
16965928 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAATGAGCGTGCAGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAATGAGCGTACAGGCACTGA
* * * * ** * * * * *
16965991 GCCGATCGGAGAGGCATAATGCGTAAG-TCGGGGATCGGCCCGATCTCCCTCTGTGTGCTGTTGA
64 ACCGACCGAAGAGGCAGAATGCACAAGCT-GGGGACCGACCCGATCCCCCTCTGCGTGCTGTCGA
16966055 TC
128 TC
16966057 TCTTTCCCAC
Statistics
Matches: 104, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.02
158 88 0.85
159 14 0.13
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCACTGAAC
CGACCGAAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCCCTCTGCGTGCTGTCGATCC
TACTACTGCAACCCTTGGTCTGGTCCGAT
Found at i:16967253 original size:159 final size:158
Alignment explanation
Indices: 16966887--16967279 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 158
16966877 TGCGAGCTAC
* * * *
16966887 CGATCCCGCAGCCACAACACTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCTGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCAA
* *
16966952 AGCCAACCCACGAAACGAGCGTACGGGTGCTTAGTCAGCCGGAGAGGCAGAATGCACAAGCCGGG
65 AGCCAACCCAAGAAACGAGCGTACGGGTGCTTAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGG
* *
16967017 GATCAGCTCGATTCCACCCTACATGCTAT
130 GATCAGCTCGAATCCACCCTACATCCTAT
* ** * * * ** * * *
16967046 CGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGA-TTGGGAATGAGCTTCGTATGCCA
1 CGATCCCGCTGCCACAACCCTCGGTCTGG-CTGGGCTTAGACAT-GGAATGAACTCCGTATGCCA
* * ** * **
16967110 AAGTCAACCCAAGAAATGAGCGT-TTGG-GCATTGAGCC-GACCGGAGAGGCATAATGCGTAAGC
64 AAGCCAACCCAAGAAACGAGCGTACGGGTGC-TT-AGCCAG-CCGGAGAGGCAGAATGCACAAGC
* *
16967172 CGGGGATC-GACTC-AATCC-CCTTCTGCATCCTGT
126 CGGGGATCAG-CTCGAATCCACC--CTACATCCTAT
*
16967205 CGATCCCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCG-ATGCCT
1 CGATCCCGCTGCCACAACCCTCGGTCTGGCT-GGGCTTAGACATGGAATGAACT-CCGTATGCCA
16967269 AAGCCAACCCA
64 AAGCCAACCCA
16967280 CAAAACAGGC
Statistics
Matches: 182, Mismatches: 41, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 13 0.07
159 160 0.88
160 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CGATCCCGCTGCCACAACCCTCGGTCTGGCTGGGCTTAGACATGGAATGAACTCCGTATGCCAAA
GCCAACCCAAGAAACGAGCGTACGGGTGCTTAGCCAGCCGGAGAGGCAGAATGCACAAGCCGGGG
ATCAGCTCGAATCCACCCTACATCCTAT
Found at i:16968263 original size:26 final size:26
Alignment explanation
Indices: 16968227--16968279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16968217 CCAATCCGAT
*
16968227 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
16968253 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
16968279 C
1 C
16968280 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16969018 original size:26 final size:26
Alignment explanation
Indices: 16968982--16969034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16968972 CTGGTTCAAT
16968982 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16969008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16969034 C
1 C
16969035 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16970204 original size:26 final size:26
Alignment explanation
Indices: 16970163--16970215 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16970153 CTGATCCGAT
*
16970163 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* **
16970189 CTTAGACTAGGCATGAACTTCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
16970215 C
1 C
16970216 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:16970582 original size:26 final size:26
Alignment explanation
Indices: 16970530--16970582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16970520 CCAGTCTGAT
*
16970530 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16970556 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16970582 C
1 C
16970583 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16971061 original size:26 final size:26
Alignment explanation
Indices: 16971032--16971084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16971022 CCAGTCCGAT
16971032 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16971058 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16971084 C
1 C
16971085 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16971791 original size:26 final size:26
Alignment explanation
Indices: 16971753--16971805 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16971743 GGCTCAAAAT
16971753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16971779 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16971805 C
1 C
16971806 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16972818 original size:157 final size:157
Alignment explanation
Indices: 16972466--16972964 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 157
16972456 CTCCATATGA
* *
16972466 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCTGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * * * ** * * *
16972531 AGTCAGAGAGGCAGAATACGTAAGCCCGGGGATTAGCCTGGTCCCCCCTGCATGCTGTCTATCCT
66 AGTCAGAAAGGCAGAATGCGCAAG-CCGAGGATCGGCCCGGTCCCCCCTG-ATGCTGTCGATCCC
* * *
16972596 GCTACCGCAACCCTCAATCCGGTCTGATC
129 GCTACCACAACCCTCAATCCGGACTGAGC
* * *
16972625 TTAGAC-TGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 TTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
* * * *
16972689 CAGTCGGAAAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTG-TGCTGTCGGTCCC
65 CAGTCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGATGCTGTCGATCCC
* ** * *
16972753 GCTGCCACAACCCTCGGT-CTGACTGGGGC
129 GCTACCACAACCCTCAATCCGGACT-GAGC
* * * *
16972782 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
* * * *
16972847 GGCCA-AAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCCCTGCGTGCCGTCGATC
66 AGTCAGAA-AGGCAGAATGCGCAAGCCGA-GGATCGGCCCGGT-CCCCCCTG-ATGCTGTCGATC
* * * * * * *
16972910 CTGCTACCGCAACCCTCAGTCCAGTCCGATC
127 CCGCTACCACAACCCTCAATCCGGACTGAGC
*
16972941 TTAGAC-TGGGAATGAACTCTGTAT
1 TTAGACAT-GGAATGAACTCCGTAT
16972965 CCTTAAACTG
Statistics
Matches: 278, Mismatches: 51, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 7 0.03
157 114 0.41
158 29 0.10
159 125 0.45
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
AGTCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGATGCTGTCGATCCCGC
TACCACAACCCTCAATCCGGACTGAGC
Found at i:16972976 original size:26 final size:26
Alignment explanation
Indices: 16972940--16972990 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16972930 CCAGTCCGAT
* *
16972940 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAAACTGGGAATGAACTCCGTATC
*
16972966 CTTAAACTGGGGATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
16972991 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATC
Found at i:16974042 original size:26 final size:26
Alignment explanation
Indices: 16974006--16974058 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16973996 CTGGTCTGAT
16974006 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16974032 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16974058 C
1 C
16974059 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.