Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 116 of 138
Found at i:16974914 original size:158 final size:158
Alignment explanation
Indices: 16974412--16974914 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
16974402 ACTCCGTATG
* *
16974412 CTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16974477 CGACCGGAGAGGCAAAATGCACAAGCCAGGTATCAACTCGATCCTCCCTACATGCTATCGATCCT
66 CGACCGAAGAGGCAAAATGCACAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * **
16974542 GCTGCTGCAACCCACTATCCGATCCGAC
131 GCTGCCGCAACCCTCGGTCCGATCCGAC
* * * *
16974570 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16974634 CCGGCC-AAGGAGGCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCCTTTGTGTGC-GCCCG
65 CCGACCGAA-GAGGCAAAATGCACAAGCCAGGGATCAACCCGATCCCCCC--TGCGTGCTG-TCG
* * * * * * **
16974697 GTCCCGCTGCCACGACCCTCGGTCCG-GCTGGGG
126 ATCCTGCTGCCGCAACCCTCGGTCCGATC-CGAC
* * * * * *
16974730 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** ***
16974795 TGATCGAAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAAAATGCACAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCT
*
16974860 GCTGCCGCAACCCTCGGTCCGATCCGAT
131 GCTGCCGCAACCCTCGGTCCGATCCGAC
16974888 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
16974915 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 149 0.55
159 3 0.01
160 112 0.41
161 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAAAATGCACAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGATCCGAC
Found at i:16974933 original size:25 final size:26
Alignment explanation
Indices: 16974888--16974939 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16974878 CCGATCCGAT
16974888 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16974914 CTTAGACTG-GGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16974939 C
1 C
16974940 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16979828 original size:26 final size:26
Alignment explanation
Indices: 16979790--16979842 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16979780 TCGGTCCTAT
16979790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16979816 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16979842 C
1 C
16979843 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16980212 original size:159 final size:159
Alignment explanation
Indices: 16979815--16980219 Score: 379
Period size: 159 Copynumber: 2.5 Consensus size: 159
16979805 AACTCCGTAT
* * * *
16979815 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAACGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
16979880 CCGACCGGAGAGGTAGAATGCGTAAGCCAAAGATCAGCCCGGTCCCCTCCTACGTGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGTAAGCCAAAGATCAGCCCGGTCCCCTCCTACGTGCTGCCGATC
** * *
16979945 CTGCTACCGCAATCCACAGCCCGGTCCAA
131 CCACTACCACAACCCACAGCCCGGTCCAA
* * * * * ** ** *
16979974 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAAGCTTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * ** * * *
16980038 -TCCGGTCGGAAAGGCATAATGCTTAAGCCAGGGATCGGCTCGGTTCCCCT-CTGCGTGCTGCC-
65 GT-CGACCGGAGAGGCAGAATGCGTAAGCCAAAGATCAGCCCGG-TCCCCTCCTACGTGCTGCCG
* * * * * *
16980100 AGTCCCACTGCCACAACCCTCGGTCCGG-CTAGG
128 A-TCCCACTACCACAACCCACAGCCCGGTCCA-A
* *
16980133 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
16980198 TCGACCGGAGAGGCAGAATGCG
66 TCGACCGGAGAGGCAGAATGCG
16980220 CAAGTTGGGG
Statistics
Matches: 185, Mismatches: 54, Indels: 14
0.73 0.21 0.06
Matches are distributed among these distances:
158 4 0.02
159 173 0.94
160 8 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGTAAGCCAAAGATCAGCCCGGTCCCCTCCTACGTGCTGCCGATC
CCACTACCACAACCCACAGCCCGGTCCAA
Found at i:16980588 original size:514 final size:512
Alignment explanation
Indices: 16979603--16980876 Score: 1453
Period size: 514 Copynumber: 2.5 Consensus size: 512
16979593 TACTGGCAAA
* * * * * * *
16979603 CCTCGATCCGACTGGGGTTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCTACGAAACGA
1 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * * * * *
16979668 GTGTGTGGGTGCTCAACCGATCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCTGGTCCCTCC
66 GAGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CC
* * * * * * * *
16979733 TGTGTGCTATCGATCCTGCTGCTGGTCCTACTGTTGCAACCATCAG-CTCGGTCCTATCTTAGAC
130 CGCGTGCTATTGATCCT-CTGCTGGTCCTGCTGTCGCAACCCTCGGTC-CGGTCCTATCTTAGAT
*
16979797 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAAC
193 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * * * * ** *
16979862 GAACGTGTGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCCAAAGATCAGCCCGGTCCCC
258 GAACATGCGGGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAAAGATCAGCCCAGTCCCC
* * * *
16979927 TCCTACGTGCTGTCGATCCTGCTACCGCAATCCACAGCCCGGTCCAATCTTAGACTGGGAATGAA
323 TCCTACGTGCTATCGATCCTGCTACCGCAACCCACAGCCCGATCCAATCTTAGACTGGGAATAAA
* ** * **
16979992 CTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAAGCTTTGATCCGGTCGGAAAGGCATAA
388 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACAAGCACTGATCCGGTCGGAAAGGCATAA
** * *
16980057 TGCTTAAGCCAGGGATCGGCTCGGTTCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAAC
453 TGCGCAAGCCAGGGATCGGCGCGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAAC
*
16980117 CCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
1 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * ** *
16980182 GCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATTGGCCTGGTCCCCCC
66 GAGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCC
* * * *
16980247 AGCGTACTATTGATCCTACTGTTGGTCCTGCTGTCGCAACCCTTGGTCCGGTCCAATCTTAGATT
131 -GCGTGCTATTGATCCT-CTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCCTATCTTAGATT
* *
16980312 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATG
194 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * * * * *** * *
16980377 AGCATGCGGGAGCTTAGCCGATCGGAGAGGCAAAATGTACAAGTCGGGGATC-GACCTAGTTCCC
259 AACATGCGGGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAAAGATCAG-CCCAGTCCCC
* * * * * * * *
16980441 TCCTGCGTGCTATCGATCTTGCTGCCGTAACCCTC-GATCCGATCCGATCTTAGACTGGTAATAA
323 TCCTACGTGCTATCGATCCTGCTACCGCAACCCACAG-CCCGATCCAATCTTAGACTGGGAATAA
* * ** *
16980505 ACTCCGTATGCCTAAGTCAAGCCACGAAACAAGCGTACGGGCACTGAGT-CGGTCGGAGAGGCAT
387 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACAAGCACTGA-TCCGGTCGGAAAGGCAT
* *
16980569 AATGCGCAAGCCAGGGATCGGCGCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCCACAAC
451 AATGCGCAAGCCAGGGATCGGCGCGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAAC
* * *
16980631 CCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGG
1 CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * * ** *
16980696 GAGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCCAGCCGAGGATCGATCTAGT-CCCCC
66 GAGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCC
* * *
16980760 -C-TGC-A-TG-----CTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTTATCTTAGATTGG
131 GCGTGCTATTGATCCTCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCCTATCTTAGATTGG
* * * * * *
16980816 GAATCAACTCTGTATGCTTAGAC-TGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAAC
196 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
16980877 AAGTGTGCGG
Statistics
Matches: 641, Mismatches: 114, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
501 33 0.05
502 64 0.10
508 2 0.00
509 1 0.00
510 2 0.00
511 1 0.00
513 9 0.01
514 527 0.82
515 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (512 bp):
CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GAGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCC
GCGTGCTATTGATCCTCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCCTATCTTAGATTGG
GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA
CATGCGGGAGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAAAGATCAGCCCAGTCCCCTCC
TACGTGCTATCGATCCTGCTACCGCAACCCACAGCCCGATCCAATCTTAGACTGGGAATAAACTC
CGTATGCCTAAGTCAACCCACGAAACAAGCATACAAGCACTGATCCGGTCGGAAAGGCATAATGC
GCAAGCCAGGGATCGGCGCGGTCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAAC
Found at i:16980757 original size:159 final size:159
Alignment explanation
Indices: 16980329--16980798 Score: 425
Period size: 159 Copynumber: 3.0 Consensus size: 159
16980319 AACTCCGTAT
* * * * *
16980329 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCA-TGCGGGAGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGAGTGCGGGCGCTCA
* ** * * * *
16980393 GCCGATCGGAGAGGCAAAATGTACAAGTCGGGGATCGACCTAGT-TCCCTCCTGCGTGCTATCGA
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCTAGTCCCCCT-CTGCGTGCTGTCGA
* * *
16980457 TCTTGCTGCCGTAACCCTCGATCCGATCCGA
129 TCCTGCTGCCGCAACCCTCGGTCCGATCCGA
* * * * ** * * * *
16980488 TCTTAGAC-TGGTAATAAACTCCGTATGCCTAAGTCAAGCCACGAAACAAGCGTACGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCA
* * * *
16980552 GTCGGTCGGAGAGGCATAATGCGCAAGCC-AGGGATCGGCGC-GGTCCCCCTCTGCGTGCTGTC-
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGA-GGATCGAC-CTAGTCCCCCTCTGCGTGCTGTCG
* * * * * *
16980614 AGTCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
128 A-TCCTGCTGCCGCAACCCTCGGTCCGATC-CGA
* * *
16980647 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGAGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAG
* * * * *
16980712 CCGGTCGGAGAGGCAGAATGCGCCAGCCGAGGATCGATCTAGTCCCCC-CTGCATGCTGCCGATC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCTAGTCCCCCTCTGCGTGCTGTCGATC
*
16980776 CTGCTGTCGCAACCCTCGGTCCG
131 CTGCTGCCGCAACCCTCGGTCCG
16980799 GTCTTATCTT
Statistics
Matches: 242, Mismatches: 58, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
158 37 0.15
159 196 0.81
160 9 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCTAGTCCCCCTCTGCGTGCTGTCGATC
CTGCTGCCGCAACCCTCGGTCCGATCCGA
Found at i:16980855 original size:25 final size:26
Alignment explanation
Indices: 16980806--16980857 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
16980796 CCGGTCTTAT
* * *
16980806 CTTAGATTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16980832 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16980857 C
1 C
16980858 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16981662 original size:25 final size:26
Alignment explanation
Indices: 16981628--16981679 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16981618 CTGGTCTGAT
16981628 CTTAGACTGGGAATGAAC-TCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
16981653 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16981679 C
1 C
16981680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16981952 original size:171 final size:171
Alignment explanation
Indices: 16981652--16982107 Score: 416
Period size: 171 Copynumber: 2.7 Consensus size: 171
16981642 GAACTCGTAT
* * * * * * *
16981652 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGTGTACGGGCGCTCTG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
16981717 CCAGTCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCTTCTGCGTGCAGTCGATC
66 CCAGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCCTGCATGCAGTCGATC
* * * **
16981782 CCATTGCCGGTCCTGCTACCA-CAACCCTCAG-TCCGG-CTGGG
131 CCACTACCGGTCCTACT-CCAGCAACCCT-AGATCCGGTCT-AA
* *
16981823 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * * *
16981887 ACCAGTTGGAGAGGCAGAATTTGCAAGTCATGGATCGGTCTGGTCCCCCCCTGCATGCTGTCGAT
65 GCCAGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCCTGCATGCAGTCGAT
* * * * **
16981952 CCTACTACTGGTCCTACTGCAGCAACCCTTGATTTGGTCTAA
130 CCCACTACCGGTCCTACTCCAGCAACCCTAGATCCGGTCTAA
* * * *
16981994 TCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
16982059 CCAGTTAGAGAGGTAGAACGTGCAAGCCAAGGATTGGCTCGATCCCCCC
66 CCAGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCC
16982108 TACGTGCTAT
Statistics
Matches: 227, Mismatches: 53, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
170 4 0.02
171 220 0.97
172 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAG
CCAGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCCTGCATGCAGTCGATC
CCACTACCGGTCCTACTCCAGCAACCCTAGATCCGGTCTAA
Found at i:16983222 original size:26 final size:26
Alignment explanation
Indices: 16983171--16983223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16983161 GGCTCACAAT
* *
16983171 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16983197 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
16983223 C
1 C
16983224 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16983390 original size:26 final size:26
Alignment explanation
Indices: 16983354--16983406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16983344 TTGATCTGAT
*
16983354 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16983380 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16983406 C
1 C
16983407 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16985071 original size:26 final size:26
Alignment explanation
Indices: 16985035--16985087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16985025 CCAGTCTAAT
16985035 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16985061 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16985087 C
1 C
16985088 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16986186 original size:159 final size:158
Alignment explanation
Indices: 16985828--16986276 Score: 352
Period size: 159 Copynumber: 2.8 Consensus size: 158
16985818 GATCTGACTA
* *
16985828 GGGCTTAGACATGGAATGAACTCCGC-ATGGCTAAGCCAACCCACGAAACGAGCATGCAGGTGCT
1 GGGCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCT
* * * * * * * * *
16985892 CAGCCGATCGGAGAGGTAGAATGCACAGGTCGAAGATCGGCTCGATCCCCTCTGCGTGCTGTCGA
65 CACCCAACCGAAGAGGTAGAATGCACAAGCCGAAGATCAGCTCGATCCCCTCTACGTGCTGTAGA
** * * **
16985957 TCTTGCTATCGCAACCCTCGGTCTGGTCT
130 TCCCGCTACCACAACCCTCGGTCCAGTCT
** * * * * *
16985986 GATCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGTGCT
1 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCT
* * * *
16986050 GACCCAACCGAAGAGGT-GTAATGCGCAAGCCGAAGATCAGCTTGGTCCCCCTCTACGTGCTGCT
65 CACCCAACCGAAGAGGTAG-AATGCACAAGCCGAAGATCAGCTCGAT-CCCCTCTACGTGCTG-T
*
16986114 AG-TCCCGCTGCCACAACCCTCGGTCCAGT-T
127 AGATCCCGCTACCACAACCCTCGGTCCAGTCT
* * * * * * *
16986144 GGGGCTTAGACATGGAACGAACTCCCTATGCCTTAGCCAACCCATGAATCGGGCTTGC-GAGTGC
1 -GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAG-GTGC
* ** * ** ** ** * * *
16986208 TCAACCGGCCGGAGAGGTAGAATGCGTAAGTTGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCG
64 TCACCCAACCGAAGAGGTAGAATGCACAAGCCGAAGATCAGCTCGATCCCCTCTACGTGCTGTAG
16986273 ATCC
129 ATCC
16986277 TACTGACGAA
Statistics
Matches: 224, Mismatches: 57, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 104 0.46
159 112 0.50
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACAGGTGCTC
ACCCAACCGAAGAGGTAGAATGCACAAGCCGAAGATCAGCTCGATCCCCTCTACGTGCTGTAGAT
CCCGCTACCACAACCCTCGGTCCAGTCT
Found at i:16987591 original size:26 final size:26
Alignment explanation
Indices: 16987562--16987617 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16987552 CCGGTCTGAT
*
16987562 CTTACAC-TGGGAATGAACTCTGTATG
1 CTTACACAT-GGAATGAACTCCGTATG
* *
16987588 CTTAGACATGGAATGAATTCCGTATG
1 CTTACACATGGAATGAACTCCGTATG
16987614 CTTA
1 CTTA
16987618 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTACACATGGAATGAACTCCGTATG
Found at i:16987889 original size:159 final size:159
Alignment explanation
Indices: 16987726--16988017 Score: 345
Period size: 159 Copynumber: 1.8 Consensus size: 159
16987716 CCTACTGCTG
* * ** *
16987726 CAACCCTCAAT-TCGATCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCCAAGTCAACCCACG
1 CAACCCTCAATCTCGAT-CGAGCTTACACAT-GGAATGAACTCCCTATGCCCAAGCCAACCCACG
* * * * *
16987789 AAACGAGCGTGCGGGTGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGT
64 AAACGAGCATCCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGT
16987854 CCCCCTCTGGGTGCTGCTGGTCCAGCTACCA
129 CCCCCTCTGGGTGCTGCTGGTCCAGCTACCA
** * * * * * * *
16987885 CAACCCTCGGTCTGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGA
1 CAACCCTCAATCTCGATCGAGCTTACACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAA
* * * *
16987950 ACGGGCATCCGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGGTCC
66 ACGAGCATCCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCC
16988015 CCC
131 CCC
16988018 CTACGTACTG
Statistics
Matches: 108, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
159 104 0.96
160 4 0.04
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.16
Consensus pattern (159 bp):
CAACCCTCAATCTCGATCGAGCTTACACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAA
ACGAGCATCCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCC
CCCTCTGGGTGCTGCTGGTCCAGCTACCA
Found at i:16988093 original size:26 final size:26
Alignment explanation
Indices: 16988064--16988116 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16988054 CCGATCCAAT
16988064 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16988090 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16988116 C
1 C
16988117 CTAAGTCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16988835 original size:26 final size:26
Alignment explanation
Indices: 16988797--16988849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16988787 GGCTCAAAAT
16988797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16988823 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
16988849 C
1 C
16988850 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16990164 original size:158 final size:156
Alignment explanation
Indices: 16989587--16990151 Score: 484
Period size: 159 Copynumber: 3.6 Consensus size: 156
16989577 CCAACTTCTG
* * * * * * ** * **
16989587 AAACGAGCGTACGGGCGCTCAGCCGGCCGAAAAGGCAGAATGCACAAGTTGGTGATCGACCCGGC
1 AAACGAGCATGCGGGCGCTCAGCAGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT
* * * ** * ** *
16989652 CCCCCTGCGTGCTGTCAATCCTACTGCTGCAGCCCTCGGTCTGA-TCCAATCTTAGAC-TGGGAA
66 CCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGACT-GGAGCTTAGACAT-GGAA
* * *
16989715 TGAACTCCATATGCATAAGTCAACGCACA
129 TGAACTCCCTATGC-TAAGCCAACCCACA
* * * * * * * *
16989744 AAACGAGCATGCGGGCGCTGAGCCGG-TCGAAGAGGCATAATGCACAAGCCAGGGATAGGCCCGG
1 AAACGAGCATGCGGGCGCTCAGCAGGCT-GGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGA
* * * *
16989808 TCCCCCTCTGCGTGCTGCCGGTCCTGCTACCACAACCCTCAGCCT-AGCTGG-GACTTAGACATG
65 T-CCCC-CTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGA-CTGGAG-CTTAGACATG
**
16989871 GAATGAACTCCCTATGCCTAAGCCAACCCATG
126 GAATGAACTCCCTATG-CTAAGCCAACCCACA
* * *
16989903 AAACGTA-CGTGCGGGTGCTCAGCCAGTC-GGAGAGGCAGAATGCGA-AAGCCGGGGATCGACCC
1 AAACG-AGCATGCGGGCGCTCAG-CAGGCTGGAGAGGCAGAATGC-ACAAGCCGGGGATCGACCC
* *
16989965 GATCCCCCTTGTGTGCTG-CTGATCCCGCTACCACAACCCTCGGTCTGACTGGAGCTTAGACATG
63 GATCCCCC-TGCGTGCTGTC-GATCCTGCTACCACAACCCTCGGTCTGACTGGAGCTTAGACATG
16990029 GAATGAACTCCCTATGACTAAGCCAACCCACA
126 GAATGAACTCCCTATG-CTAAGCCAACCCACA
* * * *
16990061 AAACTG-GCATGCAGGGCGTTCAGCAGGCTGGAGAGGCAGAATACACAAGCTGGGGATCGGCCCG
1 AAAC-GAGCATGC-GGGCGCTCAGCAGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCG
*
16990125 ATCCCCCTGCGTGCCGTCGATCCTGCT
64 ATCCCCCTGCGTGCTGTCGATCCTGCT
16990152 GCTGCAACCC
Statistics
Matches: 326, Mismatches: 60, Indels: 43
0.76 0.14 0.10
Matches are distributed among these distances:
157 53 0.16
158 110 0.34
159 156 0.48
160 7 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (156 bp):
AAACGAGCATGCGGGCGCTCAGCAGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT
CCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGACTGGAGCTTAGACATGGAATG
AACTCCCTATGCTAAGCCAACCCACA
Found at i:16990595 original size:26 final size:26
Alignment explanation
Indices: 16990557--16990609 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990547 ACAGTCCAAT
16990557 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16990583 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16990609 C
1 C
16990610 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16991088 original size:26 final size:26
Alignment explanation
Indices: 16991059--16991111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16991049 CTGGTCCGAT
16991059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16991085 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16991111 C
1 C
16991112 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16997819 original size:159 final size:156
Alignment explanation
Indices: 16997525--16998064 Score: 494
Period size: 159 Copynumber: 3.4 Consensus size: 156
16997515 ACTCCATATG
* ** * * * *
16997525 CTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * ** * *
16997589 CTGGCTGGCGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTGTCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGAT-CCCCCCTGTGTGCTGTCGGTC
16997654 -CTGCTGCCGCAACCCTCGGTCCGATCCGAT
128 TC-GCTGCCGCAACCCTCGGTCCG-TCCGAT
** * * *
16997684 CTTAGACTGGGAATTTACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCACTGAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
16997749 TGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCACCCTCTGTATGCTGTCGGTCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATC-CCCCCTGTGTGCTGTCGGTCT
* * * * **
16997814 CGCTGCCACAACCCTCGGTCTGGCTGGGG
129 CGCTGCCGCAACCCTCGGTCCGTC-CGAT
* * * * * *
16997843 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
16997907 CCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCGTGCT-ACGGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGATCCCCCCTGTGTGCTGTCGG-TC
* * ** *
16997971 TTGCTACCGCAACCCTCTATCCCGTCTGAT
128 TCGCTGCCGCAACCCTCGGT-CCGTCCGAT
* *
16998001 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
16998065 TCAGTCGTAG
Statistics
Matches: 303, Mismatches: 69, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 86 0.28
159 211 0.70
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGATCCCCCCTGTGTGCTGTCGGTCTCG
CTGCCGCAACCCTCGGTCCGTCCGAT
Found at i:16998148 original size:78 final size:78
Alignment explanation
Indices: 16998037--16998195 Score: 318
Period size: 78 Copynumber: 2.0 Consensus size: 78
16998027 CCTAAGTCAA
16998037 CCCATGAAACGAGCGTGTGGGCGCTCAGTCAGTCGTAGAGGCTGATCGGAGAGGCATATTGCACA
1 CCCATGAAACGAGCGTGTGGGCGCTCAGTCAGTCGTAGAGGCTGATCGGAGAGGCATATTGCACA
16998102 AGTCGGGGATCAG
66 AGTCGGGGATCAG
16998115 CCCATGAAACGAGCGTGTGGGCGCTCAGTCAGTCGTAGAGGCTGATCGGAGAGGCATATTGCACA
1 CCCATGAAACGAGCGTGTGGGCGCTCAGTCAGTCGTAGAGGCTGATCGGAGAGGCATATTGCACA
16998180 AGTCGGGGATCAG
66 AGTCGGGGATCAG
16998193 CCC
1 CCC
16998196 GGTCCCCTTC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (78 bp):
CCCATGAAACGAGCGTGTGGGCGCTCAGTCAGTCGTAGAGGCTGATCGGAGAGGCATATTGCACA
AGTCGGGGATCAG
Found at i:16998483 original size:26 final size:26
Alignment explanation
Indices: 16998432--16998484 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16998422 TCGGTCCGAT
*
16998432 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
16998458 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACATATG
16998484 C
1 C
16998485 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:16999671 original size:26 final size:26
Alignment explanation
Indices: 16999628--16999680 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16999618 TCGGTCCAAT
* *
16999628 CTTAGACTGGTAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
16999654 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
16999680 C
1 C
16999681 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17000768 original size:159 final size:156
Alignment explanation
Indices: 17000375--17000877 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 156
17000365 AACTCCGTAT
* * * *
17000375 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
17000440 CCGGCCGGAGAGGCAAAATGCGCAAGTCAGAGATAGGCCCGATCCCCCCTGTGTGCTGCCGATCT
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* *
17000505 TGCTGCCACAACCCTCGGTCTGATCTGA
130 TGCTGCCACAACCCTCGGTCCG-GCTGA
* * ** ** *
17000533 TCTTACAC-TGGAATGAACTCCATATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCATATGC-TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
17000597 CCGGCCGAAGAGGCATAATGCGCAAGGCGGGGATCGGCCTGGTCCCCCTCTACGTACTGTCGGTC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
* *
17000662 CCGCTGCCACAACCCTCGGTCCGGCTGGG
129 CTGCTGCCACAACCCTCGGTCCGGCT-GA
* * *
17000691 GCTTAGACATGGAATGAACTCCCTATGTCTAAGGCAACCCACGAAAC-AGGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATG-CTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCA
* * *
17000755 ACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
** * * *
17000820 CTGCTATCGCAACCCTTGGTCCGGTCCGA
129 CTGCTGCCACAACCCTCGGTCCGG-CTGA
* * *
17000849 TCTTAGAC-TGGGAATGAATTCCGTATGCT
1 GCTTAGACAT-GGAATGAACTCCATATGCT
17000878 TAGACTACGG
Statistics
Matches: 279, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 90 0.32
158 100 0.36
159 87 0.31
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGCTGA
Found at i:17001706 original size:26 final size:26
Alignment explanation
Indices: 17001677--17001729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17001667 CCGATTCGAT
* *
17001677 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
17001703 CTTAGACGGGGTATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17001729 C
1 C
17001730 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17003225 original size:159 final size:159
Alignment explanation
Indices: 17002923--17003286 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 159
17002913 AACTCCGTAT
* * * * *
17002923 GCTTAGACATTGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGAGCACTCAG
* * * *
17002988 CCGGCCAGAGAGGTAGAATGCGTAAGCTGGGGACCGGCCCGATCCCCCCCAGCATGTTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCCAGCATGCTGTCGATC
* ** * *** *
17003053 CTGCTGCTGCAACCCTCGGTTTGATTCGA
131 CTACTGCCACAACCATCGGTCCAACTCGA
* * * * * * *
17003082 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTG-GAGCGCTG
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGC-ATGCGAGCACTC
* ** * * * **
17003145 AGCCGGCCGGAGAGGCCTAATGCGCAAG-TCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCG
64 AGCCGGCCAGAGAGGCAGAATGCGCAAGCT-GGGGACCGACCCGATCCCCCCCAGCATGCTGTCG
* * *
17003209 ATTCTACTGCCACAACCATCGGTCCAACTGGG
128 ATCCTACTGCCACAACCATCGGTCCAACTCGA
*
17003241 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
17003287 TGGGCGTGCA
Statistics
Matches: 164, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 2 0.01
159 159 0.97
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGAGCACTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCCAGCATGCTGTCGATC
CTACTGCCACAACCATCGGTCCAACTCGA
Found at i:17004128 original size:159 final size:157
Alignment explanation
Indices: 17003780--17004281 Score: 553
Period size: 158 Copynumber: 3.2 Consensus size: 157
17003770 AACTTTGTAT
* **
17003780 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
17003845 CCGACCGGAGAGGCAGAATGAGCAAGCCGAGGACCGGCCCTGTCCCCC-CTGCATGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCTCTGCATGCTGCCGATC
* *
17003909 CTGCTGCCACAACCCTCGGTCTGGTCTGA
130 CTGCTGCCACAACCCTCGGTC-CGACTGA
* * * * *
17003938 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
17004002 ACCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTTGCGTGCTGCCAAT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCTCTGCATGCTGCCGAT
17004067 CCTGCTGCCACAACCCTCGGTCCGACTGA
129 CCTGCTGCCACAACCCTCGGTCCGACTGA
* * * * * *
17004096 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTTA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
17004161 GCCAACCGGAGAGGCAAAATGCGAAAGCTGGGGATCGACTCGGT-CCCCTCTGCATGCGGCCGAT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC-CCGTCCCCCTCTGCATGCTGCCGAT
* * * *
17004225 CTTGCTGCCGCAACCCTTGGTCCGGTCTGA
129 CCTGCTGCCACAACCCTCGGTCC-GACTGA
* *
17004255 TCTTAGAC-TGGGAATAAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
17004282 TTTAGACTGG
Statistics
Matches: 287, Mismatches: 49, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 158 0.55
159 123 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGTCCCCCTCTGCATGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGACTGA
Found at i:17004286 original size:26 final size:26
Alignment explanation
Indices: 17004257--17004307 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17004247 CGGTCTGATC
17004257 TTAGACTGGGAATAAACTCCGTATGT
1 TTAGACTGGGAATAAACTCCGTATGT
* *
17004283 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
17004308 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGT
Found at i:17005018 original size:26 final size:26
Alignment explanation
Indices: 17004980--17005032 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17004970 GGCTCAAACT
17004980 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17005006 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17005032 C
1 C
17005033 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17005193 original size:26 final size:26
Alignment explanation
Indices: 17005164--17005216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17005154 CCAATCTGAT
17005164 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17005190 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17005216 C
1 C
17005217 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17013955 original size:26 final size:26
Alignment explanation
Indices: 17013919--17013971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17013909 GTTAACTTAG
17013919 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17013945 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17013971 G
1 G
17013972 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17014419 original size:159 final size:158
Alignment explanation
Indices: 17014083--17014424 Score: 364
Period size: 159 Copynumber: 2.1 Consensus size: 158
17014073 CCCTACGCCT
* * *
17014083 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
1 GTTTCAT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGT
** * * *
17014148 TGTGCCAGCGGGACCGACAGCATGCAGAGGGGGATCGAACCGATCCCCAACTTGCGCATTATGCC
65 TGTGCCAGCAAGACCGACAGCACGCAGAGGGGGATCGAACCGATCCCCAACTTACGAATTATGCC
*
17014213 TCTCCGACCAGCTCAGCGCCCGAATGCTC
130 TCTCCGACCAGCTCAGCGCCCGAAGGCTC
** * * * * *
17014242 GTTTTGTGGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCAGACTGAGGG
1 GTTTCATGG-TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGGG
** * * ** * *
17014306 TTGTGGTAGCAAGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTACTAATTATGC
64 TTGTGCCAGCAAGACCGACAGCACGCAGAGGGGGATCGAACCGATCCCCAACTTACGAATTATGC
* * * * *
17014371 CTCTTCGACC-GACTGAGCGCCTGCAGGTTC
129 CTCTCCGACCAG-CTCAGCGCCCGAAGGCTC
17014401 GTTTCATAGGTTGGCTTAGGCATA
1 GTTTCAT-GGTTGGCTTAGGCATA
17014425 TCATTCCATG
Statistics
Matches: 147, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 3 0.02
159 139 0.95
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GTTTCATGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTT
GTGCCAGCAAGACCGACAGCACGCAGAGGGGGATCGAACCGATCCCCAACTTACGAATTATGCCT
CTCCGACCAGCTCAGCGCCCGAAGGCTC
Found at i:17014560 original size:58 final size:58
Alignment explanation
Indices: 17014474--17014624 Score: 275
Period size: 58 Copynumber: 2.6 Consensus size: 58
17014464 AAGATCGGAC
* *
17014474 TGGATTGAGGGTTGCGGCAGCAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGAT
1 TGGATTGAGGGTTGTGGCAGTAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGAT
*
17014532 TGGATTGGGGGTTGTGGCAGTAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGAT
1 TGGATTGAGGGTTGTGGCAGTAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGAT
17014590 TGGATTGAGGGTTGTGGCAGTAGGACTAGCAGCAG
1 TGGATTGAGGGTTGTGGCAGTAGGACTAGCAGCAG
17014625 ATCAGGACGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 89 1.00
ACGTcount: A:0.23, C:0.16, G:0.44, T:0.17
Consensus pattern (58 bp):
TGGATTGAGGGTTGTGGCAGTAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGGAT
Found at i:17014736 original size:26 final size:26
Alignment explanation
Indices: 17014706--17014756 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17014696 GTTGACTTAG
17014706 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17014732 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
17014757 TGATTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17015661 original size:26 final size:26
Alignment explanation
Indices: 17015613--17015665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17015603 GTTGACTTAG
*
17015613 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
17015639 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
17015665 G
1 G
17015666 ATTAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:17017336 original size:299 final size:299
Alignment explanation
Indices: 17016809--17017350 Score: 748
Period size: 299 Copynumber: 1.8 Consensus size: 299
17016799 GGCTTGCGCA
* *
17016809 TTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAA
1 TTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTCGCTTAGGCATAGGGAA
* * * * *
17016874 TTCATTCCATGTCTAAGCCCCAGCCGGATTGAGAGTTCTGGTAGCGGGACTTGCAGCACGCAGAG
66 TTCATTCCATGTCTAAGCCCCAGCCAGATCGAGAGTTCTAGCAGCGGGACTCGCAGCACGCAGAG
* * * ** * ** *
17016939 GGGGACCAGGTCGATCCCTGGCTTGTGGATTATGCCTCTCCGATTGGCTCAGCGTCTGCACGCTC
131 GGGGACCAGGTCGATCCCTGGCTTGCGCATGATGCCTCTCCGACCGACTCAGCACCCGCACGCTC
* * * *
17017004 CTTTCGTGGGTTGACTTAGGCTTACGAAGTTCATTTCC-AGTCTAAGATCGGACCGGACCAAAGG
196 ATTTCGTGGGTTGACTTAGACATACGAAGTTCA-TTCCTAATCTAAGATCGGACCGGACCAAAGG
17017068 TTGCACACATGGGGGACCGGGCCGATCCCTAGCTTACGTG
260 TTGCACACATGGGGGACCGGGCCGATCCCTAGCTTACGTG
* *
17017108 TTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCCCATTTCATGGGTTCGCTTAGGCATAGGGAG
1 TTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTCGCTTAGGCATAGGGAA
* * * *
17017173 TTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTAGCAGCGGGAC-CGATAGCACGCAGA
66 TTCATTCCATGTCTAAGCCCCAGCCAGATCGAGAGTTCTAGCAGCGGGACTCG-CAGCACGCAGA
* * * *
17017237 GGGGGACC-GGGCTGATCCCTGGCTTGCGCATGATGCCTCTTCGGCCGACTCAGCACCCGTACGC
130 GGGGGACCAGGTC-GATCCCTGGCTTGCGCATGATGCCTCTCCGACCGACTCAGCACCCGCACGC
* *
17017301 TCATTTCGTGGGTTGACTTATACATACGGAGTTCATTCCTAATCTAAGAT
194 TCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCTAATCTAAGAT
17017351 TGAACCAGAC
Statistics
Matches: 208, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
298 8 0.04
299 200 0.96
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (299 bp):
TTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTTCGCTTAGGCATAGGGAA
TTCATTCCATGTCTAAGCCCCAGCCAGATCGAGAGTTCTAGCAGCGGGACTCGCAGCACGCAGAG
GGGGACCAGGTCGATCCCTGGCTTGCGCATGATGCCTCTCCGACCGACTCAGCACCCGCACGCTC
ATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCTAATCTAAGATCGGACCGGACCAAAGGT
TGCACACATGGGGGACCGGGCCGATCCCTAGCTTACGTG
Found at i:17018234 original size:26 final size:26
Alignment explanation
Indices: 17018204--17018255 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17018194 GTTGACTTAG
17018204 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17018230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17018256 TATTGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17019094 original size:26 final size:27
Alignment explanation
Indices: 17019055--17019108 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
17019045 GTTGACTTAG
17019055 GCATACGGAAGTTCA-TCCTTAGTCTAA
1 GCATACGGAAGTTCATTCC-TAGTCTAA
17019082 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACGGAAGTTCATTCCTAGTCTAA
17019108 G
1 G
17019109 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (27 bp):
GCATACGGAAGTTCATTCCTAGTCTAA
Found at i:17019434 original size:157 final size:156
Alignment explanation
Indices: 17019082--17019434 Score: 365
Period size: 157 Copynumber: 2.2 Consensus size: 156
17019072 CTTAGTCTAA
* * *
17019082 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGACCAGCA
* * * * *
17019147 GCACGTAGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAACGCTC
65 GCACGCAGGAGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCC
* * **
17019212 GCACACTCGTTTCATGGGTTGGGTTAG
130 ACACACTCGTTTCAGGGGTTGACTTAG
* ** *
17019239 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGGGCAGC-G-A-GACCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCAAGGGTT--GCAGCAGTAGGACCA
* ** * * * *
17019300 GCAGCACGCAGGGGGGACCGGGCTGATCCCC-GACTTGCGCATTATGCCTTTTCGACCAGCTCAG
62 GCAGCACGCA-GGAGGACCGGGCCAATCCCCAG-CTTGCACATTATGCCTCTCCGACCAGCTCAA
* * *
17019364 CGCCCACACGCTCGTTTCGGGGGTTGACTTAT
125 CGCCCACACACTCGTTTCAGGGGTTGACTTAG
17019396 GCATACGGAGTTCATTCCGAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGAC
17019435 TGAGGTTTGC
Statistics
Matches: 158, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
156 17 0.11
157 131 0.83
158 5 0.03
159 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGACCAGCAG
CACGCAGGAGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTCCGACCAGCTCAACGCCCA
CACACTCGTTTCAGGGGTTGACTTAG
Found at i:17019590 original size:26 final size:26
Alignment explanation
Indices: 17019554--17019606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17019544 GTTGACTTAG
17019554 GCATACGGAGTCCATCCCTAGTCTAA
1 GCATACGGAGTCCATCCCTAGTCTAA
* * *
17019580 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTCCATCCCTAGTCTAA
17019606 G
1 G
17019607 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCTAGTCTAA
Found at i:17020048 original size:501 final size:498
Alignment explanation
Indices: 17019024--17020139 Score: 1271
Period size: 501 Copynumber: 2.2 Consensus size: 498
17019014 CCGGCTTAGC
* *
17019024 CCCT-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAAGTTCATCCTTAGTCTAAGCATAC
1 CCCTCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGG-AGTTCATCCCTAGTCTAAGCATAC
* * * *
17019088 GAAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGC-AGCAGTAGGATCGGCAGCACG
65 GGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGTAGGATCGACAGCACA
* *
17019152 TAGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAACGCTCGCACA
129 TAGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAACGCCCGCACA
* * * *
17019217 CTCGTTTCATGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAG
194 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAG
* * *
17019282 GGTTGGGCAGCGAGACCAGCAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGC
259 GGTTGGGCAGCGAGACCAGCAGCACGCAGAGGGGACCGAGCTGATCCCCGACTTACGCATTATGC
** * * * * *
17019347 CTTTTCGACCAGCTCAGCGCCCACACGCTCGTTTCGGGGGTTGACTTATGCATACGGAGTTCATT
324 CACTCCGACCAGCTCAACACCCACACGCTCGTTTCGGAGGTTGACTTAGGCATACGGAGTTCATT
* * * * * *
17019412 CCGAGTCTAAGATCAGACCGGACTGAGGTTTGCAGTAGCAGGATTAACAGCACCTATGGGGGATC
389 CCCAGTCTAAGATCAAACCGGACTGAGGGTTGCAGTAGCAAGATCAACAGCACCTATGGGGGACC
***
17019477 GAGCTGATCCCTGGCTTGGGCAATCTGCCTCTCCCGCCGACTGAG
454 GAGCTGATCCCCAACTTGGGCAATCTGCCTCTCCCGCCGACTGAG
* *
17019522 CCCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTCCATCCCTAGTCTAAGCATACG
1 CCCTCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACG
* * * *
17019587 GAGTTCATTCCTATTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGATAGTACATA
66 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACAT-
* * * * ** * * * ** *
17019652 AGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCTGATC-GATCGAGTGCCCGCACG
130 AGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCT-GAACGCCCGCACA
* * *
17019716 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-GACCGTACCGA
194 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAA
* * ** * * * *
17019780 GGGTTGTGGTAGCGGGACTGGCAGCACGCAGAAGGGGATCGAGCTGATCCCTGGCTTACGTATTA
258 GGGTTG-GGCAGCGAGACCAGCAGCACGCAG-AGGGGACCGAGCTGATCCCCGACTTACGCATTA
** * * **
17019845 TGCCACTCCGGTCTGTTCAACACCCACACGCTCGTTTCTTAGGTTGACTTAGGCATACGGAGTTC
321 TGCCACTCCGACCAGCTCAACACCCACACGCTCGTTTCGGAGGTTGACTTAGGCATACGGAGTTC
* * *
17019910 ATTCCCAGTCTAAGATCAAACCGGA-TCGAGGGTTGCGGTAGCAAGATCGACAGCACGTA-GAGG
386 ATTCCCAGTCTAAGATCAAACCGGACT-GAGGGTTGCAGTAGCAAGATCAACAGCACCTATG-GG
* * * * * **
17019973 GGACCGAG-TCGGTCCCCAACTTGTGCATTCTGCCTCTCCTGTCGGTTGAG
449 GGACCGAGCT-GATCCCCAACTTGGGCAATCTGCCTCTCCCGCCGACTGAG
* * ** * *
17020023 CACC-GGCAAGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCATA
1 C-CCTCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTA-GTCTAAGCATA
* ** *
17020086 CGGAGTTCATTCCCAGTCT-AGCATTGGACCGGACTGAGGGTTGCGACAGTAGGA
64 CGGAGTTCATTCCTAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGTAGGA
17020140 CCAGCAACAG
Statistics
Matches: 517, Mismatches: 88, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
498 84 0.16
499 144 0.28
500 26 0.05
501 261 0.50
502 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (498 bp):
CCCTCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACG
GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACATA
GGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAACGCCCGCACACC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGG
TTGGGCAGCGAGACCAGCAGCACGCAGAGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCA
CTCCGACCAGCTCAACACCCACACGCTCGTTTCGGAGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAAACCGGACTGAGGGTTGCAGTAGCAAGATCAACAGCACCTATGGGGGACCGA
GCTGATCCCCAACTTGGGCAATCTGCCTCTCCCGCCGACTGAG
Found at i:17020104 original size:26 final size:25
Alignment explanation
Indices: 17020055--17020109 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
17020045 GTTGGCTTAG
17020055 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCT-A
17020081 GCATACGGAGTTCATTCCCA-GTCTA
1 GCATACGGAGTTCATT-CCATGTCTA
17020106 GCAT
1 GCAT
17020110 TGGACCGGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 5 0.18
26 20 0.71
27 3 0.11
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCATGTCTA
Found at i:17020948 original size:26 final size:26
Alignment explanation
Indices: 17020897--17020949 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17020887 GTTGGCTTAG
*
17020897 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
17020923 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
17020949 G
1 G
17020950 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:17021648 original size:26 final size:26
Alignment explanation
Indices: 17021618--17021670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17021608 GTTGACTTAG
17021618 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17021644 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17021670 G
1 G
17021671 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17022134 original size:26 final size:26
Alignment explanation
Indices: 17022105--17022157 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17022095 GTTGGATTAG
*
17022105 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17022131 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17022157 G
1 G
17022158 ATCTGACCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17022511 original size:26 final size:26
Alignment explanation
Indices: 17022462--17022512 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17022452 TTGGCTTAAG
* *
17022462 CATACGGAGTTCATTCCATGTCTAAT
1 CATACGAAGTTCATTCCATATCTAAT
17022488 CATACGAAGTTCATTCCCA-ATCTAA
1 CATACGAAGTTCATT-CCATATCTAA
17022513 GATCGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCATATCTAAT
Found at i:17022716 original size:356 final size:361
Alignment explanation
Indices: 17021876--17022856 Score: 911
Period size: 356 Copynumber: 2.7 Consensus size: 361
17021866 AGGACCAGGT
* * * * * * * * *
17021876 CAATCCTCGACTTGCGCATTATGCCTCTCCGGTCGGCTCACCGCTCGCACGCTCGTTTCATGGGT
1 CAATCCTCAACTTGCGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCACACGCTCGTTTCATAGGT
* * * * * *
17021941 TGTCTTAGGCATACGGAGTTGATTCTCAGTCTAAGA-TAGACCAGACCGAGGGTTG-GAGTAGCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGAACGAGGGTTGCG-GCAGCA
* * * * * *
17022004 GGATC-GACA--GA---ACA-C-AG-GGGGATC-AGGCC-AGT-CCCTGCTTTGCGCATTCTACC
130 GGA-CAGACAGCGATCGGCAGCGAGAGGGGACCGA-GCCGA-TCCCCAGC-TTACGCATTATGCC
* * * * ** * *
17022057 TCTCCGGTCAATTAAGCACCCGTACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTC
191 TCTCCGGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTC
* * * *
17022122 CATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCTGACCACACCGAGGGTTGCGACAGTC
256 CATGTCTAAGCATAGAGAGTTCATTCCCAATCTAAGATCGGACCACACCGAGGGTTGCGACAGTA
* *
17022187 GGACCAGTAGCAGGATCGACAGTGCACAAGGGGAGATCGGGC
321 GGACCAGTAGCAGGATCGACAG-ACACAAGGGGAGATCGAGC
* *** * * * *
17022229 TAATCCTTGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTGCCCACACGCTCGTTTCATGGGT
1 CAATCCTCAACTTGCGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCACACGCTCGTTTCATAGGT
* * * *
17022294 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGATGGTTGCGGCAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGAACGAGGGTTGCGGCAGCAG
* * * **
17022359 GATAGACAGC-A-CGG-AG-G-G-GGGGACCGAGCCGATCCTCAGCTTGCGCATTATGCCT-TTT
131 GACAGACAGCGATCGGCAGCGAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCC
*
17022417 GGACCAACTGAGCGCCCACACGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
196 GG-CCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
* *
17022482 TCTAATCATACGA-AGTTCATTCCCAATCTAAGATCGGACCACACCGAGGGTTGCGGCAGTAGGA
260 TCTAAGCATA-GAGAGTTCATTCCCAATCTAAGATCGGACCACACCGAGGGTTGCGACAGTAGGA
* *
17022546 CCAGTAGCAGGGTC-AGCA-ACACACAGGAGGGGATCGAGC
324 CCAGTAGCAGGATCGA-CAGACACA-AGG-GGAGATCGAGC
* * * * *
17022585 CGATCCTCAACTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCGCTCGCACGCTCGTTTCGTAGGT
1 CAATCCTCAACTTGCGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCACACGCTCGTTTCATAGGT
* * * *
17022650 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCTAG-TCA-AACAGAGGGTTGTGGTAG
66 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT-TAGATCAGAAC-GAGGGTTGCGGCAG
* * *
17022712 CAGGACCGACAGCGGGATCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCAGCTTACGCATTA
128 CAGGACAGACAGC--GATCGGCAG--CG-AG-AGGGGACCGAGCCGATCCCCAGCTTACGCATTA
* * * **
17022777 TGCCTCTCCGGTCGACTGAGCTCCTGCACGCTCGTTTCGTGGGTTGGCTT-AGTCATACGGAGTT
187 TGCCTCTCCGGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAAG-CATACGGAGTT
17022841 CATTCCATGTCTAAGC
251 CATTCCATGTCTAAGC
17022857 CCCAGTCGGA
Statistics
Matches: 510, Mismatches: 84, Indels: 53
0.79 0.13 0.08
Matches are distributed among these distances:
353 86 0.17
354 31 0.06
355 14 0.03
356 265 0.52
357 9 0.02
359 1 0.00
360 3 0.01
361 2 0.00
364 1 0.00
366 1 0.00
367 2 0.00
368 92 0.18
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (361 bp):
CAATCCTCAACTTGCGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCACACGCTCGTTTCATAGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGAACGAGGGTTGCGGCAGCAG
GACAGACAGCGATCGGCAGCGAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCC
GGCCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGT
CTAAGCATAGAGAGTTCATTCCCAATCTAAGATCGGACCACACCGAGGGTTGCGACAGTAGGACC
AGTAGCAGGATCGACAGACACAAGGGGAGATCGAGC
Found at i:17022824 original size:171 final size:171
Alignment explanation
Indices: 17022600--17022955 Score: 484
Period size: 171 Copynumber: 2.1 Consensus size: 171
17022590 CTCAACTTGT
* * *
17022600 GCATTCTGCCTCTTCGGTCAGCTGAGCGCTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGGTCAGCTGAGCCCTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACG
* * * *
17022665 GAGTTCATTCCATGTCTAAGCTCTAGTC-AAACAGAGGGTTGTGGTAGCAGGACCGACAGCGGGA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGAAACA-AGGGTTGTGGTAGCAAGACCGACAACGGGA
*
17022729 TCGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCAGCTTAC
130 TCGGCAGCACGCAGAAGGGGACCAGGCTGATCCCCAGCTTAC
* *
17022771 GCATTATGCCTCTCCGGTC-GACTGAGCTCCT-GCACGCTCGTTTCGTGGGTTGGCTTAGTCATA
1 GCATTATGCCTCTCCGGTCAG-CTGAGC-CCTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATA
* * * *
17022834 CGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGTAGCAAGATCGGCAACGGG
64 CGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAACAAGGGTTGTGGTAGCAAGACCGACAACGGG
* * * * **
17022899 ATCGGCAGCATGCAGAGGGGGACTAGGCTGATCCCCGGCTTGT
129 ATCGGCAGCACGCAGAAGGGGACCAGGCTGATCCCCAGCTTAC
17022942 GCATTATGCCTCTC
1 GCATTATGCCTCTC
17022956 TGGTTGGCCT
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
170 1 0.01
171 156 0.96
172 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (171 bp):
GCATTATGCCTCTCCGGTCAGCTGAGCCCTCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCGAAACAAGGGTTGTGGTAGCAAGACCGACAACGGGAT
CGGCAGCACGCAGAAGGGGACCAGGCTGATCCCCAGCTTAC
Found at i:17023043 original size:26 final size:26
Alignment explanation
Indices: 17023013--17023065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17023003 GTTGACTTAG
17023013 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17023039 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17023065 G
1 G
17023066 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17025164 original size:26 final size:26
Alignment explanation
Indices: 17025134--17025186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17025124 GTTGACTTAG
17025134 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
17025160 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
17025186 G
1 G
17025187 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:17025664 original size:26 final size:26
Alignment explanation
Indices: 17025634--17025686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17025624 GTTAGCTTAG
*
17025634 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17025660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17025686 G
1 G
17025687 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17026043 original size:26 final size:26
Alignment explanation
Indices: 17026014--17026066 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026004 GTTGACTTAG
17026014 GCATAAAGAGTTCATCCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
** * *
17026040 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATAAAGAGTTCATCCCCAGTCTAA
17026066 G
1 G
17026067 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAAGAGTTCATCCCCAGTCTAA
Found at i:17026354 original size:159 final size:159
Alignment explanation
Indices: 17026180--17026538 Score: 390
Period size: 159 Copynumber: 2.3 Consensus size: 159
17026170 GCCTGTTTAA
* * **
17026180 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACGG
* * *
17026244 CAG-CAAGATCGACAGCGCGCAA-AGGGGGACCGGG-TCGAT-CCTCGGCTTGCGCATTATGCCT
66 CAGTC-AGATCGACACCACG-AAGAGGGGGACCGGGCT-GATCCCT-GGCTTGCGCATTAT-ACT
* *
17026305 TTCCGGCCTGCTCAGCACCCGAACGCTCGTTTCG
126 CTCCGGCCAGCTCAGCACCCGAACGCTCGTTTCG
* * *** *
17026339 TGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACCGAGGGTTACG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTACG
* * * * *
17026402 GCAGTCGGATCGATACCACGAAGGGGGGGACCGGGCTGGTCCCTGGCTTGCGCATTCTACTCTCC
65 GCAGTCAGATCGACACCACGAAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATACTCTCC
* * *
17026467 GGCCAGCTGAGCACCCGCACGCTCTTTTCG
130 GGCCAGCTCAGCACCCGAACGCTCGTTTCG
* *
17026497 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17026539 TACAGAGTTC
Statistics
Matches: 165, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.02
158 66 0.40
159 88 0.53
160 8 0.05
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACGG
CAGTCAGATCGACACCACGAAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATACTCTCCG
GCCAGCTCAGCACCCGAACGCTCGTTTCG
Found at i:17026380 original size:875 final size:871
Alignment explanation
Indices: 17024734--17026721 Score: 2235
Period size: 875 Copynumber: 2.3 Consensus size: 871
17024724 TGAGCGTCTG
* ** * *
17024734 CACGCTCATTTT-ATGGGTTGACTTAGGAATACAAAGTTCACTCCA-GTCTAAGCATATAGAGTT
1 CACGCTC-TTTTCATGGGTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
* * * *
17024797 CGTTCCTAGTATAAGATCGGATCGGATCGAGGGTTGCGGTAGCATGACCAGCAGCAAGATCGGCA
64 CATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAAGATCGACA
* * *** * ** * *
17024862 GCACGCAGGGGGGACCGGGTCGATCCTTGGTTTGTGCATTCTACGTCTCCGATCGGCTGAGCACC
129 GCACGCAGGAGGGACCGGGCCGATCCACAGCTTCCGCATTCTACCTCTCCGACCGGCTGAGCACC
* * * *
17024927 CGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAG
194 CCCACGATCGTATCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * ** ** *
17024992 ATCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCAGCAGCATGCAGAAAGGGATCGGGCCCAG
259 ACCGAGGGTTGTGGCAGCAAGACCGACAGCAAGATCAGCAGCACGCAGAAAGGGATCGGGCCCAG
* ** *
17025057 GCTTACGCATTATGCCTCTCCAGCTGGCCTATCTGACCGGCTGACCGCTCACATGCTCATTTCAT
324 GCTTACGCATTATGCCTCTCCAGCTGGCCTATCCGACAAGCTGACCGCCCACATGCTCATTTCAT
** *
17025122 GGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAG
389 GGGTTGACTTAGGCATAAAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCT-A-
* *
17025187 ATCAGATCGGACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACTGAGCCGATCCC
452 A-CAGATCGGACCGAGGGTTACAGCAACAGGATCGACAGCACGCAGGGGGGACTGAACCGATCCC
* * *
17025252 CAGCTTGTGCATTCTGCCTCTTCGACTGACTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTA
516 CAGCTTGTGCATTCTGCCTCTGCGACAGACTGAGCGCCCGCATGCCCGTTTAATGGGTTGGCTTA
* * **
17025317 GGCATAGGGAGTTCATTCCGTGTCTAAGCCCCAGCCAGACCGATGGTTGTGGCAACGGGACCGAC
581 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGACCGAC
* * * * * *
17025382 AGCACGTAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATTATGCCTTTCCGGCTGGTTTAGCG
646 AGCACGCAAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGGCTGGCTCAGCA
* * *
17025447 CCTGAACGCTCGTTTCATGGGTTGACTTATACATATGAAGTTCATTTCACATCTAAGATCAGACC
711 CCCGAACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATTTCACATCTAAGATCAGACC
* * * * * *
17025512 AAAATAAGGGTTGCAGTAG-CAGGATTGACAGCACGCAA-GGGGGATCGAGCCGGTCCCCGGCTT
776 AAAACAAGGGTTACAGCAGTC-GGATCGACACCACG-AAGGGGGGACCGAGCCGGTCCCCGGCTT
* * *
17025575 ATGCATTTTACCCTCCAGCCAACTGAGCGCCCA
839 ACGCATTCTACCCTCCAGCCAACTGAGCACCCA
17025608 CACGCT-TCTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
1 CACGCTCT-TTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTT
* * * *
17025672 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGACCCA-CAGCAGGATCGAT
64 CATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGA-CCAGCAGCAAGATCGAC
* * * * * * * *
17025736 AGCATGTAGGAGGGACTGGGCCGATCCACAGCTTCCGTATTCTGCCTCTTCGGCCGGTTGAGCAC
128 AGCACGCAGGAGGGACCGGGCCGATCCACAGCTTCCGCATTCTACCTCTCCGACCGGCTGAGCAC
* * * *
17025801 CCCCACGCTCGTATCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCAGCCG
193 CCCCACGATCGTATCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
17025866 GACCGAGGGTTGTGGTAGCAAGACCGACAGCAAGATCGGCGGCACGCAGAAGGGGATCGGGCTGA
258 GACCGAGGGTTGTGGCAGCAAGACCGACAGCAAGATCAGCAGCACGCAGAAAGGGATC-GG--G-
* * * * * * * *
17025931 ACCCCGGCTTGCGTATTATGCCTCTCC-GATCGGCCTCTCCGATAAGCTGAGCGCCCGCATGCTC
319 -CCCAGGCTTACGCATTATGCCTCTCCAGCT-GGCCTATCCGACAAGCTGACCGCCCACATGCTC
* * *
17025995 ATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCA
382 ATTTCATGGGTTGACTTAGGCATAAAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
* * *
17026060 GTCT-A-AGATCGGATCGAGGGTTACGGCAACAGGATCGGCAGCACGCAGGGGGGACTGAACCGA
447 GTCTAACAGATCGGACCGAGGGTTACAGCAACAGGATCGACAGCACGCAGGGGGGACTGAACCGA
* * ** *
17026123 TCCCTAGCTTGTGCATTCTGTCTCTGC-AGCAGGTTGAGCGCCCGCATGCCTGTTTAATGGGTTG
512 TCCCCAGCTTGTGCATTCTGCCTCTGCGA-CAGACTGAGCGCCCGCATGCCCGTTTAATGGGTTG
* *
17026187 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGA
576 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGA
* * * *
17026252 TCGACAGCGCGCAAAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCT-GC
641 CCGACAGCACGCAAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGG-CTGGC
* * *
17026316 TCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TTCCCAGTCTAAGA
705 TCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATTTCACA-TCTAAGA
** * ** * * * * * *
17026380 TTGGATCGGACCGAGGGTTACGGCAGTCGGATCGATACCACGAAGGGGGGGACCGGGCTGGTCCC
769 TCAGACCAAAACAAGGGTTACAGCAGTCGGATCGACACCACGAA-GGGGGGACCGAGCCGGTCCC
* * * * * *
17026445 TGGCTTGCGCATTCTACTCTCCGGCCAGCTGAGCACCCG
833 CGGCTTACGCATTCTACCCTCCAGCCAACTGAGCACCCA
* * *
17026484 CACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGCATACAGAGTTC
1 CACGCTCTTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
** * *
17026549 ATTCCTAGTCTAAGATCAAATCGGATCAAGGG-T----T-GC--GA-CAGTAG---GATCGACAG
65 ATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAAGATCGACAG
* * * * * * * * *
17026602 TACGCAGGGGGGACCGAGCCAATCC-CTGGCTTACGCATTCTACCTCTCTGACTGGCTGAGCGCC
130 CACGCAGGAGGGACCGGGCCGATCCAC-AGCTTCCGCATTCTACCTCTCCGACCGGCTGAGCACC
** ** * * *
17026666 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
194 CCCACGATCGTATCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
17026722 ATACGGAGTT
Statistics
Matches: 929, Mismatches: 165, Indels: 50
0.81 0.14 0.04
Matches are distributed among these distances:
863 1 0.00
864 101 0.11
866 2 0.00
867 2 0.00
868 2 0.00
870 2 0.00
871 1 0.00
872 1 0.00
873 3 0.00
874 41 0.04
875 517 0.56
876 140 0.15
877 2 0.00
878 1 0.00
879 2 0.00
880 111 0.12
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (871 bp):
CACGCTCTTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA
TTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAAGATCGACAGC
ACGCAGGAGGGACCGGGCCGATCCACAGCTTCCGCATTCTACCTCTCCGACCGGCTGAGCACCCC
CACGATCGTATCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
CGAGGGTTGTGGCAGCAAGACCGACAGCAAGATCAGCAGCACGCAGAAAGGGATCGGGCCCAGGC
TTACGCATTATGCCTCTCCAGCTGGCCTATCCGACAAGCTGACCGCCCACATGCTCATTTCATGG
GTTGACTTAGGCATAAAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAACAG
ATCGGACCGAGGGTTACAGCAACAGGATCGACAGCACGCAGGGGGGACTGAACCGATCCCCAGCT
TGTGCATTCTGCCTCTGCGACAGACTGAGCGCCCGCATGCCCGTTTAATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACAAGACCGACAGCAC
GCAAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGGCTGGCTCAGCACCCGA
ACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATTTCACATCTAAGATCAGACCAAAAC
AAGGGTTACAGCAGTCGGATCGACACCACGAAGGGGGGACCGAGCCGGTCCCCGGCTTACGCATT
CTACCCTCCAGCCAACTGAGCACCCA
Found at i:17026562 original size:26 final size:26
Alignment explanation
Indices: 17026510--17026562 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026500 GTTGGCTTAG
* * *
17026510 GCATACGGAGTTTATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17026536 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
17026562 G
1 G
17026563 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17026687 original size:184 final size:183
Alignment explanation
Indices: 17026352--17026747 Score: 470
Period size: 184 Copynumber: 2.1 Consensus size: 183
17026342 GTTGACTTAG
*** * * * *
17026352 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGCAGTCGGATCGATA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTACGACAGTAGGATCGACA
* *** * *
17026417 CCACGAAGGGGGGGACCGGGCTGGTCCCTGGCTTGCGCATTCTACTCTCCGGCCAGCTGAGCACC
65 CCACGAAGGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTACTCTCCGACCAGCTGAGCACC
* * * ** * *
17026482 CGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAA
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
* * *
17026536 GCATACAGAGTTCATTCCTAGTCTAAGATCAAATCGGATCAAGGGTTGCGACAGTAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTACGACAGTAGGATCGACA
** * * ** *
17026601 GTACGCA-GGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTACCTCTCTGACTGGCTGAGCGC
65 CCACGAAGGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTA-CTCTCCGACCAGCTGAGCAC
*
17026665 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
129 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
17026720 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATAC-GAGTTCATTCCCAGTCTAAGA
17026748 GTTTGAGCCA
Statistics
Matches: 177, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 31 0.18
184 145 0.82
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTACGACAGTAGGATCGACAC
CACGAAGGGGGGGACCGAGCCAATCCCTGGCTTACGCATTCTACTCTCCGACCAGCTGAGCACCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
Found at i:17026724 original size:26 final size:26
Alignment explanation
Indices: 17026694--17026746 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026684 GTTGGCTTAG
17026694 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
17026720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17026746 G
1 G
17026747 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17028559 original size:367 final size:356
Alignment explanation
Indices: 17027804--17028660 Score: 928
Period size: 367 Copynumber: 2.4 Consensus size: 356
17027794 GTTGTGGTAG
* * * * * * ** *
17027804 CAGGATTGATAGCACGCAGGAGGGATCGGGCCGGTCCCTGACTTTTGCATTCTGCCTCTCTGACT
1 CAGGATCGACAGCACACAGGAGGGATCGAGCTGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCT
* * * * * * * *
17027869 GACTGAGCTCCCGCACGCTCATTTCGTGGGTTTGCTTAGGCATACGAAGTTCATTCCGTGTCTAA
66 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * ** * ** **
17027934 ACCCCAGTCGGACTGAAGGTTGTGGCAACAGGACTGGCAGCGGGATCGGTAGCATGCAGAGGGGG
131 GCCCCAGTCGCACTGAAGGTTGTGGCAACAGGACCAGCAGCGAGATCGACAGCACACAGAGGGGG
* * ** *
17027999 ATCGGGCTGATCCCCGGCTTGCTGCATTATGCCTTTTCAGTTGGCTGAGCGCCCACACGCTCGTT
196 ACCGGGCTGATCCCCAGCTTGAAGCATTATGCCTTTACAGTTGGCTGAGCGCCCACACGCTCGTT
* * *
17028064 TCATGGGTTGACTTAGGCATACGGAGTTCATCCACAGTTTAAGCATACGGAGTTCATTTCCAGTC
261 TCATGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGGAGTTCATTTCCAGTC
*** * * *
17028129 TAAGATCAGATCGGGTCGAAGGTTGTGATAG
326 TAAGATCAGATCGAACCGAAGGTTGCGACAA
* * * *
17028160 CAGGATCGACAGCACGCAGGGGGGATCGAGCTGGTCCCCGACCTGCGCATTCTGCCTCTCCGGCT
1 CAGGATCGACAGCACACAGGAGGGATCGAGCTGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCT
* * *
17028225 GGCTGAGCGCCCACATGCCCGTTTCGTGGGTTGGCTTAGGCGTAAGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * * *
17028290 GCCCCAGTCGCACTGAGGGTTGTGGTAGCAGGACCAGCAGCGAGATCGACAGGACACAGAGGGGG
131 GCCCCAGTCGCACTGAAGGTTGTGGCAACAGGACCAGCAGCGAGATCGACAGCACACAGAGGGGG
*
17028355 ACCGGGCTGATCCCCAGCTT-AAGCATTATGCCTCTCCTACTGGCCTCTGCGACCGCTGAGCGCC
196 ACCGGGCTGATCCCCAGCTTGAAGCATTATGCCT-T--TAC-AG--T-T--G---GCTGAGCGCC
** * * * *
17028419 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTTATCCCCAATCTAAGCATACGGAGT
249 CACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGGAGT
* *
17028484 TC-TTTCCCAGTCTAAGATCAG-TCTGAACCGAGGGTTGCGGCAA
314 TCATTT-CCAGTCTAAGATCAGATC-GAACCGAAGGTTGCGACAA
* * * * * * * *
17028527 TAGGATCGGCAGCATATAGGAGGGATCGAGCTGATCTCCGACTTGCGCATTCTACCTCTCTGGCC
1 CAGGATCGACAGCACACAGGAGGGATCGAGCTGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCT
* * *
17028592 GGTTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
17028657 GCCC
131 GCCC
17028661 TAGCCGGACC
Statistics
Matches: 411, Mismatches: 76, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
355 11 0.03
356 179 0.44
358 2 0.00
359 1 0.00
361 1 0.00
362 1 0.00
364 1 0.00
366 5 0.01
367 210 0.51
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (356 bp):
CAGGATCGACAGCACACAGGAGGGATCGAGCTGGTCCCCGACTTGCGCATTCTGCCTCTCTGGCT
GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
GCCCCAGTCGCACTGAAGGTTGTGGCAACAGGACCAGCAGCGAGATCGACAGCACACAGAGGGGG
ACCGGGCTGATCCCCAGCTTGAAGCATTATGCCTTTACAGTTGGCTGAGCGCCCACACGCTCGTT
TCATGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGGAGTTCATTTCCAGTC
TAAGATCAGATCGAACCGAAGGTTGCGACAA
Found at i:17029309 original size:26 final size:26
Alignment explanation
Indices: 17029241--17029349 Score: 130
Period size: 26 Copynumber: 4.0 Consensus size: 26
17029231 GTTGGCTGAG
* *
17029241 GCATACGGATTTCATGTTCCATGTCTAA
1 GCATACGGAGTTCAT-TCCCA-GTCTAA
17029269 GGCGATACGGAGTTCATT-CCATGTCTAA
1 -GC-ATACGGAGTTCATTCCCA-GTCTAA
17029297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17029323 GTATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17029349 G
1 G
17029350 ATTGGACCGG
Statistics
Matches: 75, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 45 0.60
27 5 0.07
28 10 0.13
29 3 0.04
30 12 0.16
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17029533 original size:26 final size:26
Alignment explanation
Indices: 17029497--17029548 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17029487 TGGCTTAGGC
*
17029497 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGAAGTTCATTCCCA-GTCTAAGA
17029523 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
17029549 TTTTGAGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:17030264 original size:26 final size:26
Alignment explanation
Indices: 17030228--17030280 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17030218 GTTGACTTAG
17030228 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17030254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17030280 G
1 G
17030281 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17030541 original size:158 final size:158
Alignment explanation
Indices: 17030308--17030900 Score: 563
Period size: 157 Copynumber: 3.8 Consensus size: 158
17030298 GTTACGGCAA
* * ** * * ** * *
17030308 CAGGATCGGACAGCACGTA-AGGGGGATCGGGCCAATCCTCGACTTACGCATTCTGCCTATCTGA
1 CAGGATC-GACAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGA
* * * * * *
17030372 CCGGCTGAGCGCCTGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA-TTCATTCCATGTCT
65 CCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
* *
17030436 AACCCCCAGTCAGATTGAGGGTTGTGGTAG
130 AA-CCCCAGTCGGACTGAGGGTTGTGGTAG
* * * * *
17030466 CGGGATCGATAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGC
1 CAGGATCGACAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGAC
* * *
17030531 CGACTCAGCGCC-GCACGCTCATTTCATGGGCTGACTTAGGCATA-GCGAGTTCATTCC-TAGTA
66 CGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACG-GAGTTCATTCCAT-GTC
*** * * ** *
17030593 TAAGATCGGACTGGACTGAGGGTTACGATAG
129 TAACCCCAGTC-GGACTGAGGGTTGTGGTAG
* * ** *
17030624 CAGGATCGACAGCACGTAG-GGGGGACCGGGCTAATCCATGGCTTATGCATT-TGCCTCTCTGAC
1 CAGGATCGACAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGAC
** * * * *
17030687 CGGTTGAGCTCTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
* *
17030752 AGCCCCAGTCGGACCGAGGGTTGTGGCAG
131 A-CCCCAGTCGGACTGAGGGTTGTGGTAG
* * * * *
17030781 CAGGATCGACAGCAC-ATAGAGAGGGAGCGGGCTGATCCCCGACTTGAGCATCATGCCTCTCTGA
1 CAGGATCGACAGCACGA-AGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGA
* ** *
17030845 CCGACTGAGTGCCCCCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
65 CCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
17030901 CCCCAGTCTA
Statistics
Matches: 343, Mismatches: 80, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
156 18 0.05
157 145 0.42
158 123 0.36
159 57 0.17
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGGATCGACAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTGAC
CGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
ACCCCAGTCGGACTGAGGGTTGTGGTAG
Found at i:17030839 original size:315 final size:317
Alignment explanation
Indices: 17030254--17030912 Score: 853
Period size: 315 Copynumber: 2.1 Consensus size: 317
17030244 CCCAGTCTAA
* *
17030254 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAACAGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGGAC
*
17030319 AGCACGTAAGGGGGATCGGGCCAATCCTCGACTTACGCATTCTGCCTATCTGACCGGCTGAGCGC
66 AGCACGTAAGGGGGACCGGGCCAATCCTCGACTTACGCATTCTGCCTATCTGACCGGCTGAGCGC
* * *
17030384 CTGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTCATTCCATGTCTAACCCCCAGTCAG
131 CTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGATTCATTCCATGTCTAACCCCCAGTCAG
** * * * * * *
17030449 ATTGAGGGTTGTGGTAGCGGGATCGATAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGTG
196 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGAGGGACCGGGCCGATCCCCGACTTGAG
* * *
17030514 CATTATGCCTCTCCGGCCGACTCAGCG-CCGCACGCTCATTTCATGGGCTGACTTAG
261 CATCATGCCTCTCCGACCGACTCAGCGCCCCCACGCTCATTTCATGGGCTGACTTAG
* * * * *
17030570 GCATA-GCGAGTTCATTCCTAGTATAAGATCGGACTGGACTGAGGGTTACGATAGCAGGATC-GA
1 GCATACG-GAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGGA
* * * * * *
17030633 CAGCACGTAGGGGGGACCGGGCTAATCCAT-GGCTTATGCATT-TGCCTCTCTGACCGGTTGAGC
65 CAGCACGTAAGGGGGACCGGGCCAATCC-TCGACTTACGCATTCTGCCTATCTGACCGGCTGAGC
* * * * *
17030696 TCTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
129 GCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGA-TTCATTCCATGTCTAACCCCCAGT
* * *
17030761 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC-ATAGAGAGGGAGCGGGCTGATCCCCGACT
193 CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGA-AGAGAGGGACCGGGCCGATCCCCGACT
* * * * *
17030825 TGAGCATCATGCCTCTCTGACCGACTGAGTGCCCCCACGCTCGTTTCATGGGTTGACTTAG
257 TGAGCATCATGCCTCTCCGACCGACTCAGCGCCCCCACGCTCATTTCATGGGCTGACTTAG
* *
17030886 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTATAAG
17030913 CATACAGAGT
Statistics
Matches: 293, Mismatches: 44, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
314 53 0.18
315 138 0.47
316 101 0.34
317 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGACAACAGGATCGGAC
AGCACGTAAGGGGGACCGGGCCAATCCTCGACTTACGCATTCTGCCTATCTGACCGGCTGAGCGC
CTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGATTCATTCCATGTCTAACCCCCAGTCAG
ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGAGGGACCGGGCCGATCCCCGACTTGAG
CATCATGCCTCTCCGACCGACTCAGCGCCCCCACGCTCATTTCATGGGCTGACTTAG
Found at i:17030916 original size:26 final size:26
Alignment explanation
Indices: 17030886--17030938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17030876 GTTGACTTAG
*
17030886 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17030912 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17030938 G
1 G
17030939 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17031550 original size:26 final size:26
Alignment explanation
Indices: 17031520--17031572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17031510 GTTGACTTAG
17031520 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17031546 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17031572 G
1 G
17031573 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17032749 original size:26 final size:26
Alignment explanation
Indices: 17032713--17032764 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17032703 TTGACTTAGA
* *
17032713 CATACGGAGTTCATCTCCAGTCTAAG
1 CATACGAAGTTCATCTCCAATCTAAG
*
17032739 CATACGAAGTTCATTTCCAATCTAAG
1 CATACGAAGTTCATCTCCAATCTAAG
17032765 ACTGGATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATCTCCAATCTAAG
Found at i:17032969 original size:184 final size:193
Alignment explanation
Indices: 17032673--17033120 Score: 470
Period size: 184 Copynumber: 2.3 Consensus size: 193
17032663 CTCTCTGGTC
* * * * * * *
17032673 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCTCCA-GTCTA
1 GGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTA
* * *
17032737 AGCATACGAAGTTCATTTCCAATCTAAGACTGGATAGGACAGAGGGTTG-CG-A-TA-G-C-A-G
65 AGCATACGAAGTTCATTCCCAATCTAAGACTAGACAGGACAGAGGGTTGTCGCAGTAGGACGACG
* * * * * *
17032795 -GATCTG-CACCATGTAGAGGTGACCGGGCTGATCCCTGGCTTA-CGCATTATGCCTCTTCGGCA
130 AGATC-GACACCATGCAGAGGGGACCGGGCTGATCCCTGACGTAGCGCATTATACCTCTCCGGCA
*
17032857 GGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
17032922 GCATGCGGAGTTCATTCCCAATCTAAGA-TCAGACCGGACCGAGGGTTGTGGCAGTAGGACCGAC
66 GCATACGAAGTTCATTCCCAATCTAAGACT-AGACAGGACAGAGGGTTGTCGCAGTAGGA-CGA-
* * * * *
17032986 GGCGAGATCGATAGCATGCAGAGGGGATCGGGCTGATCCCTGACGTAGTGCATTCTACCTCTCCG
128 --CGAGATCGACACCATGCAGAGGGGACCGGGCTGATCCCTGACGTAGCGCATTATACCTCTCCG
*
17033051 GCC
191 GCA
* * *
17033054 GGCTGAGCACCCACATGCCCATTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
17033119 GC
66 GC
17033121 CCCAATCGGA
Statistics
Matches: 216, Mismatches: 32, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
183 5 0.02
184 91 0.42
185 1 0.00
186 1 0.00
187 2 0.01
188 1 0.00
190 1 0.00
191 1 0.00
195 2 0.01
196 33 0.15
197 78 0.36
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (193 bp):
GGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCATACGAAGTTCATTCCCAATCTAAGACTAGACAGGACAGAGGGTTGTCGCAGTAGGACGACGA
GATCGACACCATGCAGAGGGGACCGGGCTGATCCCTGACGTAGCGCATTATACCTCTCCGGCA
Found at i:17033163 original size:11 final size:11
Alignment explanation
Indices: 17033147--17033172 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17033137 GTTGGGGCAC
17033147 CATCATCGGAG
1 CATCATCGGAG
17033158 CATCATCGGAG
1 CATCATCGGAG
17033169 CATC
1 CATC
17033173 GTCAGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:17036171 original size:35 final size:35
Alignment explanation
Indices: 17036125--17036198 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
17036115 AAGCATAGGA
*
17036125 GTTCATTCCCAGTCTAAGATCAGACCATATCAAGG
1 GTTCATTCCCAGTCTAAGATCAGACCAGATCAAGG
17036160 GTTCATTCCCAGTCTAAGATCAGACCAGATCAAGG
1 GTTCATTCCCAGTCTAAGATCAGACCAGATCAAGG
17036195 GTTC
1 GTTC
17036199 CGACAGTAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (35 bp):
GTTCATTCCCAGTCTAAGATCAGACCAGATCAAGG
Found at i:17036497 original size:26 final size:26
Alignment explanation
Indices: 17036467--17036519 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17036457 GTTGGCTTAG
17036467 GCATAC-ATAGTTCATTCC-ATGTCTAA
1 GCATACGA-AGTTCATTCCTA-GTCTAA
17036493 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
17036519 G
1 G
17036520 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:17037029 original size:159 final size:157
Alignment explanation
Indices: 17036556--17037166 Score: 512
Period size: 159 Copynumber: 3.9 Consensus size: 157
17036546 AGTAAGACCA
* * *
17036556 GCAGCAGGATCGATAGCACACAG-GGGGGATCGAACCGATCCCCAGCTTGCGCATTCTGCCTCTC
1 GCAGC-GGGTCGACAGCACACAGAGGGGGATCG-AGCGATCCCCAGCTTGCGCATTCTGCCTCTC
* * * * *
17036620 CGACCTGCTGAGCGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 CGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
*
17036685 TCTAAGCCCCAGCCGGATGGAGGGTTGTG
129 TCTAAGCCCCAGCCGGATCGAGGGTTGTG
* * * * * * * * * * ** *
17036714 GCAACGAGACTGGCAGCACGCAAAGGGGGACCGGGCCATTCCCCGGCTTATGCATTCTACCTCTC
1 GCAGCGGGTC-GACAGCACACAGAGGGGGATCGAGCGA-TCCCCAGCTTGCGCATTCTGCCTCTC
* ** *
17036779 CGGTCGGCTGAGCGCCCGCACGCCCATTTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATT
64 CGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* *
17036844 TCTAAGCCCCAGTCGGATCGAAGGTTGTG
129 TCTAAGCCCCAGCCGGATCGAGGGTTGTG
*
17036873 GCAGCGGGGTCGACAGCACACAGAGGGGGATCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTC
1 GCAGC-GGGTCGACAGCACACAGAGGGGGATCGAGC-GATCCCCAGCTTGCGCATTCTGCCTCTC
* * * * * * * *
17036938 CGGCCGGCTCAGCACCCACACGCTCATTTCGTCGATTGACTTAGGCATACGGAGTTCATTCTCA-
64 CGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC-CAT
** * *
17037002 GTCTAAG-ATCAGACCGGACCGAGGGTTGCG
128 GTCTAAGCCCCAG-CCGGATCGAGGGTTGTG
* * * * ** * * * * * *
17037032 GTAGCAAGATTGGTAGCATACAG-GGGGGAT-GGGCCGGTCTCCAGCTTGCACATTCTACCTCTC
1 GCAGC-GGGTCGACAGCACACAGAGGGGGATCGAG-CGATCCCCAGCTTGCGCATTCTGCCTCTC
** * * * * * * * * **
17037095 CAACCGACTGAGCACCCGCACGCTCGTTCCATGGGTTGGATTAGGCATACGGAGTTCATTCCACA
64 CGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
17037160 TCTAAGC
129 TCTAAGC
17037167 ATACAGAGTT
Statistics
Matches: 356, Mismatches: 87, Indels: 20
0.77 0.19 0.04
Matches are distributed among these distances:
156 2 0.01
157 82 0.23
158 25 0.07
159 241 0.68
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GCAGCGGGTCGACAGCACACAGAGGGGGATCGAGCGATCCCCAGCTTGCGCATTCTGCCTCTCCG
GCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCCGGATCGAGGGTTGTG
Found at i:17037168 original size:26 final size:26
Alignment explanation
Indices: 17037139--17037191 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17037129 GTTGGATTAG
*
17037139 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
17037165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17037191 G
1 G
17037192 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17037544 original size:25 final size:27
Alignment explanation
Indices: 17037509--17037561 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
17037499 GTTGACTTAG
17037509 GCATAACGGAGTTCA-TCCCAGTCTAA
1 GCATAACGGAGTTCATTCCCAGTCTAA
17037535 GCAT-ACGGAGTTCATTCCCAGTCTAA
1 GCATAACGGAGTTCATTCCCAGTCTAA
17037561 G
1 G
17037562 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (27 bp):
GCATAACGGAGTTCATTCCCAGTCTAA
Found at i:17037729 original size:26 final size:26
Alignment explanation
Indices: 17037693--17037745 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17037683 GTTGGCTTAG
17037693 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17037719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17037745 G
1 G
17037746 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17037936 original size:26 final size:26
Alignment explanation
Indices: 17037902--17037954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17037892 GTTGACTTAG
* *
17037902 GCATCCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
17037928 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
17037954 G
1 G
17037955 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:17038201 original size:160 final size:156
Alignment explanation
Indices: 17038014--17038432 Score: 430
Period size: 158 Copynumber: 2.6 Consensus size: 156
17038004 GGGACCGGGT
* * * *
17038014 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCGTTTTCGTGGC
1 CGATCCC-GGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCG-TTTCATGG-
*
17038079 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGC-
63 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-CCGAACCGAGGGTTGTGGCAGCA
** * *
17038143 GAGACTGGTAGCACGCTGAGG-GTGATCAGAC
127 G-GACTGACAGCACGC-AAGGAGGGATCAGAC
* * * * *
17038174 CGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTTGTTTCATGGGT
1 CGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCAT-GGT
* * ** * * *
17038239 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGACTGGACCGAGGGTTGTGGCAGCAG
64 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCACCGAACCGAGGGTTGTGGCAGCAG
* ** *
17038303 GATTGACAGCACGCAAGGAGGGATTGGGC
128 GACTGACAGCACGCAAGGAGGGATCAGAC
* * * * * *
17038332 CGGTCCCCGGCTTACCCATTCTGCCTCTCTGATCGGTTGAGCGCCCGTACGCTCATTTCATTGGT
1 CGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCA-TGGT
*
17038397 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17038433 ATACGGAGTT
Statistics
Matches: 211, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.03
158 114 0.54
159 40 0.19
160 50 0.24
161 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.25
Consensus pattern (156 bp):
CGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCGAACCGAGGGTTGTGGCAGCAGGAC
TGACAGCACGCAAGGAGGGATCAGAC
Found at i:17038440 original size:26 final size:26
Alignment explanation
Indices: 17038405--17038457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17038395 GTTGGCTTAG
* *
17038405 GCATATGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
17038431 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17038457 G
1 G
17038458 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17038932 original size:171 final size:170
Alignment explanation
Indices: 17038532--17038969 Score: 483
Period size: 171 Copynumber: 2.6 Consensus size: 170
17038522 ACTGGGTCGG
* * * * * * ** * *
17038532 TCCCCAGCTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCACCCGTACGCTCATTTCCTGGGTTGG
1 TCCCCAGCTTGCGCATTATGCCTCTCCGGACGGCTAAGCACCCACACGCTCGTTTCATGGGTTGG
*
17038597 CTTAGGCATACAGAGTTCATT-CATGTCTAAGCCCCAACCGAACCGAAGGTTGCGGCAGCAAGAC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGCGGCAGCAAGAC
* *
17038661 CCGCAGCAGGATCGACAGCACGCAGGGGAGACCAGGCCGA
131 CCGCAACAGGAACGACAGCACGCAGGGGAGACCAGGCCGA
* *
17038701 TCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCACCCACACGCTCGTTTCATGGGTTGG
1 TCCCCAGCTTGCGCATTATGCCTCTCCGGACGGCTAAGCACCCACACGCTCGTTTCATGGGTTGG
* * *
17038766 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGCAAGA
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA-ACCGAAGGTTGCGGCAGCAAGA
* ** * * **
17038830 -CCGCCAACGGGAACGGTAGCATGCAGAGGGTGACC-GGTTGGA
130 CCCG-CAACAGGAACGACAGCACGCAG-GGGAGACCAGG-CCGA
* * ** * *
17038872 TCACC-GACTTGTGCATTATGCCTCTCCGGACGGCTAAGTGCCCACAGGCTTGTTTCATGGGTTG
1 TCCCCAG-CTTGCGCATTATGCCTCTCCGGACGGCTAAGCACCCACACGCTCGTTTCATGGGTTG
* *
17038936 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
65 GCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
17038970 ATACGGAGTT
Statistics
Matches: 231, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
169 81 0.35
170 56 0.24
171 91 0.39
172 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (170 bp):
TCCCCAGCTTGCGCATTATGCCTCTCCGGACGGCTAAGCACCCACACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAAGGTTGCGGCAGCAAGAC
CCGCAACAGGAACGACAGCACGCAGGGGAGACCAGGCCGA
Found at i:17038972 original size:26 final size:26
Alignment explanation
Indices: 17038942--17038992 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17038932 GTTGACTTAG
17038942 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17038968 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
17038993 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17039360 original size:158 final size:158
Alignment explanation
Indices: 17038968--17039464 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 158
17038958 CCCAGTCTAA
* * **
17038968 GCATACGGAGTTCATTCCCAGTC-TACGATCGGACCAGACCGAGGGTTGCAATAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTTA-GATCAGACCAGACCGAGGGTTGCGATAGCAAGATCGAC
* * * * * *
17039032 AGCACGCA-GGGGGACCAGATCGATCCTCGGTTTGTGCATTCTACCTCTCC-AGCCGGCTAAGCG
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGAGCATTCTACCTCTCCGA-CCGGCTAAGCG
* * *
17039095 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** *** * * * ** **
17039125 GCATA-GTGAGTTCA-T-CCATGTCTAAGCCCCAGTTGA-ATCGAGTGTTGTGGCAGCGGGA-CT
1 GCATACG-GAGTTCATTCCCA-GTCTTAG-ATCAGACCAGACCGAGGGTTGCGATAGCAAGATC-
* * * * ** * * * *
17039185 GACAGCGCTCAGAGGGGGATCGGGCCGATCCCCAGCTTGAAAATTATGCCTCTCCGATCGGCTCA
62 GACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCTAA
*
17039250 GCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
17039283 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATCGACA
* * * * *
17039348 GCACGCAGGGGGGATCGAGTCGATCCCTGGCTT-ACGCATTCTACCTCTTCGACCGGTTAAGCAC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGA-GCATTCTACCTCTCCGACCGGCTAAGCGC
* *
17039412 CCGTACGCTTGTTTCGTGGGTTGTCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* *
17039441 GCATACGAAGTTCATCCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
17039465 AAGCATACAA
Statistics
Matches: 256, Mismatches: 70, Indels: 27
0.73 0.20 0.08
Matches are distributed among these distances:
155 4 0.02
156 27 0.11
157 17 0.07
158 170 0.66
159 34 0.13
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGATAGCAAGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGAGCATTCTACCTCTCCGACCGGCTAAGCGCC
CGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17039812 original size:26 final size:26
Alignment explanation
Indices: 17039783--17039835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17039773 GTTGGCTTAG
17039783 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17039809 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17039835 G
1 G
17039836 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17040547 original size:26 final size:26
Alignment explanation
Indices: 17040518--17040570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17040508 GTTGACTTAG
17040518 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17040544 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17040570 G
1 G
17040571 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17041071 original size:26 final size:26
Alignment explanation
Indices: 17041019--17041071 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17041009 GTTGGCTTAG
* *
17041019 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
17041045 GCATGCGGAGTTCATTCC-TAGTATAA
1 GCATACGGAGTTCATTCCAT-GTATAA
17041071 G
1 G
17041072 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:17041252 original size:26 final size:26
Alignment explanation
Indices: 17041215--17041267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17041205 GTTGACTTAG
17041215 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
17041241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17041267 G
1 G
17041268 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17041425 original size:184 final size:183
Alignment explanation
Indices: 17040863--17041426 Score: 517
Period size: 184 Copynumber: 3.0 Consensus size: 183
17040853 TGACTTAGGT
* * * * * * * *
17040863 ATACGGAGTTCATTTCTAGTCTAAGAT-TGGACCAGACCGAGGGTTGTGATAGCAAGATTGACAG
1 ATACGGAGTTCATTCCTAGTCTAAGATCT-AACCAGACTGACGGTTGCGACAGCAGGATCGACAG
* * * * * * *
17040927 CACACAGGGGGGATCGGGTCGGTCCCTAGCTTGTGCATTCTACCTTTCCGGCTGGCTGAGCACCC
65 CACACAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGTC-GGCTGAGCGCCC
*
17040992 GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT-TATTCCATGTCTAAGC
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCT-TTCCATGTCTAAGC
* * * * *
17041047 ATGCGGAGTTCATTCCTAGTATAAGATC-AGACCGAAACGAGGTTTACGGTAGTAGGACCAACAG
1 ATACGGAGTTCATTCCTAGTCTAAGATCTA-ACC---A-GA--CTGACGGT--T--G--CGACAG
* *** * * *
17041111 CAGGATCGACAGCATACAGCAAGGATTGGGCCGATCCCCAGCTTATGCATTCTGCCTCTCTGGTC
53 CAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTC-CGTC
* * * * * *
17041176 GGTTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC-ATCCCTAGTCTA
117 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCAT-GTCTA
17041240 AGC
181 AGC
* *
17041243 ATACGGAGTTCATTCCCAGTCTAAGATCTAACCAGACTGACGGTTGCGACAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCTAGTCTAAGATCTAACCAGACTGACGGTTGCGACAGCAGGATCGACAGC
* * *
17041308 ACGCAGGGGGGATCGGGCCGATCCCC-GACTTGCGCATTCTGCCTCTCCAGTCAGCTGAGCGCCC
66 ACACAGGGGGGATCGGGCCGATCCCCAG-CTTGTGCATTCTGCCTCTCC-GTCGGCTGAGCGCCC
* * * * *
17041372 ACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGC
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGC
17041427 CCCAGCCAAA
Statistics
Matches: 297, Mismatches: 62, Indels: 42
0.74 0.15 0.10
Matches are distributed among these distances:
183 1 0.00
184 134 0.45
185 4 0.01
186 1 0.00
187 1 0.00
188 3 0.01
190 10 0.03
192 3 0.01
193 1 0.00
194 1 0.00
195 4 0.01
196 131 0.44
197 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
ATACGGAGTTCATTCCTAGTCTAAGATCTAACCAGACTGACGGTTGCGACAGCAGGATCGACAGC
ACACAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGC
Found at i:17042316 original size:26 final size:26
Alignment explanation
Indices: 17042279--17042331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17042269 GTTGACTTAG
17042279 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17042305 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
17042331 G
1 G
17042332 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17042778 original size:26 final size:26
Alignment explanation
Indices: 17042749--17042801 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17042739 GTTGACTTAG
17042749 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17042775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17042801 G
1 G
17042802 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17043192 original size:26 final size:26
Alignment explanation
Indices: 17043162--17043214 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17043152 GTTGGGTTAT
*
17043162 GCATATGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
17043188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
17043214 G
1 G
17043215 ATTGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:17046917 original size:26 final size:26
Alignment explanation
Indices: 17046888--17046940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17046878 GTTGACTTAG
*
17046888 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17046914 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17046940 G
1 G
17046941 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17047445 original size:26 final size:26
Alignment explanation
Indices: 17047415--17047467 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17047405 GTTGACTTAG
17047415 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCAGT-CCCAGTCTAA
17047441 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
17047467 G
1 G
17047468 TTCCAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:17048372 original size:26 final size:26
Alignment explanation
Indices: 17048338--17048387 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17048328 GGCTTAGGCA
17048338 TACGAAGTTCATT-CCATGTCTAAGCT
1 TACGAAGTTCATTCCCA-GTCTAAGCT
*
17048364 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17048388 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:17052062 original size:141 final size:141
Alignment explanation
Indices: 17051808--17052089 Score: 528
Period size: 141 Copynumber: 2.0 Consensus size: 141
17051798 GTGGGATGGG
*
17051808 GTACTTGTTCTTGATGGTCAGCTTGTTCAAAGCCTGGTAGTCTATGCACAGCCGCAACAACCCAT
1 GTACTTGTTCTTGATGGTCAGCTTGTTCAAAGCCTGGTAGTCTATGCACAGCCACAACAACCCAT
* *
17051873 CATGCTTGCGCTGAAATAGAATCGGTGCACCATAGGGTGCCTTCGATGGCCTGATGAAGCCAGCA
66 CATGCTTGCACTGAAATAGAACCGGTGCACCATAGGGTGCCTTCGATGGCCTGATGAAGCCAGCA
17051938 TCAACTAACTC
131 TCAACTAACTC
*
17051949 GTACTTGTTCTTGATGGTCAGCTTGTTCAAAGCCTGGTAGTCTATGTACAGCCACAACAACCCAT
1 GTACTTGTTCTTGATGGTCAGCTTGTTCAAAGCCTGGTAGTCTATGCACAGCCACAACAACCCAT
17052014 CATGCTTGCACTGAAATAGAACCGGTGCACCATAGGGTGCCTTCGATGGCCTGATGAAGCCAGCA
66 CATGCTTGCACTGAAATAGAACCGGTGCACCATAGGGTGCCTTCGATGGCCTGATGAAGCCAGCA
17052079 TCAACTAACTC
131 TCAACTAACTC
17052090 TTTGAGCTGC
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (141 bp):
GTACTTGTTCTTGATGGTCAGCTTGTTCAAAGCCTGGTAGTCTATGCACAGCCACAACAACCCAT
CATGCTTGCACTGAAATAGAACCGGTGCACCATAGGGTGCCTTCGATGGCCTGATGAAGCCAGCA
TCAACTAACTC
Found at i:17052426 original size:13 final size:13
Alignment explanation
Indices: 17052408--17052439 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
17052398 CTCTTCTCAA
17052408 TGGCACTAGGCAT
1 TGGCACTAGGCAT
17052421 TGGCACTAGGCAT
1 TGGCACTAGGCAT
17052434 TGGCAC
1 TGGCAC
17052440 CGTACATCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (13 bp):
TGGCACTAGGCAT
Found at i:17054072 original size:116 final size:116
Alignment explanation
Indices: 17053930--17054161 Score: 410
Period size: 116 Copynumber: 2.0 Consensus size: 116
17053920 TCTAGAACTG
17053930 GCTTTCCTCCCTCTTCCATGCCCATGCTTCTAGGCCTCTGGTTGTTGGTTAGCAGCATCACTTTG
1 GCTTTCCTCCCTCTTCCATGCCCATGCTTCTAGGCCTCTGGTTGTTGGTTAGCAGCATCACTTTG
* *
17053995 GGATGCCATCTCCTCTAACCTACACAACACAAACATGTAGAATCGAACTTA
66 GGATGCCATCTCCTCTAACCTACACAACACAAACACGCAGAATCGAACTTA
* * *
17054046 GCTTTCCTCCCTTTTCCATGCCCATGCTTCTGGGCCTCTGGTTGTTGGTTAGCAGCGTCACTTTG
1 GCTTTCCTCCCTCTTCCATGCCCATGCTTCTAGGCCTCTGGTTGTTGGTTAGCAGCATCACTTTG
*
17054111 GGATGCCATCTCCTCTAACCTGCACAACACAAACACGCAGAATCGAACTTA
66 GGATGCCATCTCCTCTAACCTACACAACACAAACACGCAGAATCGAACTTA
17054162 CTCTGACACC
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 110 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (116 bp):
GCTTTCCTCCCTCTTCCATGCCCATGCTTCTAGGCCTCTGGTTGTTGGTTAGCAGCATCACTTTG
GGATGCCATCTCCTCTAACCTACACAACACAAACACGCAGAATCGAACTTA
Found at i:17055330 original size:26 final size:26
Alignment explanation
Indices: 17055294--17055346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17055284 GTTGACTTAG
*
17055294 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17055320 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17055346 G
1 G
17055347 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17055681 original size:159 final size:157
Alignment explanation
Indices: 17055320--17055822 Score: 347
Period size: 159 Copynumber: 3.2 Consensus size: 157
17055310 CCCAGTCTAA
* * * *
17055320 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAG-ACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* **
17055385 GCACGCAAGGGGGAGAAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCCGAGTGCC
65 GCACGCAAGGGGGAGAAGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCCGAGCACC
* ** *
17055450 CGCACGCTCGTTTGGTGGGTTGGCTCAG
130 CGCACGCTCATTTCATGGGTTGACTCAG
* ** ** * * **
17055478 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATTGGACCGAGGGTTGTGGCAGTGGGA-CGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATAGACCGGATCGAGGGTTGCGGCAGCAGGATC-G
* *** * * * *
17055540 GCAGCATGCAGAGGGGGATCGGGCCGATCCTC-AGCTTGCGTATTATGCCTCTCTGATCGGCTC-
62 GCAGCACGCA-AGGGGGAGAAGGCCAATCCTCGA-CTTGCGCATTATGCCTCTCCGACCGGC-CG
*
17055603 AGCACCCGCACGCTCATTTCATGGGTTGACTTAG
124 AGCACCCGCACGCTCATTTCATGGGTTGACTCAG
* *** * **
17055637 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * * * * *
17055702 GCACGCATGGAGGGATCG-A-GCCGATCCCCGGCTTACACATTCTACCTCTCTGACAGGCTGAGC
65 GCACGCAAGG-GGGA--GAAGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCCGAGC
* * * ** * *
17055765 GCCTGAACGCTCATTTTGTGGGTTGGCTTAG
127 ACCCGCACGCTCATTTCATGGGTTGACTCAG
17055796 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17055823 CATACGGAGT
Statistics
Matches: 265, Mismatches: 63, Indels: 33
0.73 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 199 0.75
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAAGGGGGAGAAGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCCGAGCACCC
GCACGCTCATTTCATGGGTTGACTCAG
Found at i:17055832 original size:26 final size:26
Alignment explanation
Indices: 17055796--17055848 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17055786 GTTGGCTTAG
17055796 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17055822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17055848 G
1 G
17055849 GTCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17056118 original size:13 final size:13
Alignment explanation
Indices: 17056100--17056126 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17056090 TGTGCATTAT
17056100 GCCTCTCCGACTG
1 GCCTCTCCGACTG
17056113 GCCTCTCCGACTG
1 GCCTCTCCGACTG
17056126 G
1 G
17056127 TTGAGTGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGACTG
Found at i:17056954 original size:159 final size:159
Alignment explanation
Indices: 17056534--17056984 Score: 500
Period size: 158 Copynumber: 2.8 Consensus size: 159
17056524 GGGACCGGCA
*** *
17056534 GGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCTTAGCTTGCGCATTATGCCTCTTCGACT
1 GGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCT
* *
17056599 GGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
66 GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
* *
17056664 G-ATCTGATCGGACCAAAGGTTGCGGCAGT
130 GCATCAGATCGGACCAAAGGTTGCGGCAGC
* * * * * * * *
17056693 TGAATCGACAGCACGCA-AGGGGGA-TCGACCTGATCCCCGGCTTGCGCATTCTACCTC-TCTGG
1 GGGACCGGCAGCACGCAGAGGGGGACTGGGCC-GATCCCCGGCTTGCGCATTATGCCTCTTC-GG
* * * * *
17056755 TTGGCTGAGCACCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTCT
64 CTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCT
* * *
17056820 AAGCCA-CAG-TCGGACCGAGGGTTGTGGCAGC
128 AAG-CATCAGATCGGACCAAAGGTTGCGGCAGC
* * *
17056851 GGGACCGGTAGCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCC
1 GGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCT
* ** * * * *
17056916 AGCTCAATGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
66 GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
17056981 GCAT
130 GCAT
17056985 ATCGAGTTCA
Statistics
Matches: 235, Mismatches: 47, Indels: 20
0.78 0.16 0.07
Matches are distributed among these distances:
157 9 0.04
158 117 0.50
159 101 0.43
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGACCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCT
GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAG
CATCAGATCGGACCAAAGGTTGCGGCAGC
Found at i:17063278 original size:26 final size:26
Alignment explanation
Indices: 17063242--17063294 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17063232 GTTGACTTAG
*
17063242 GCATACTGAGTTCATCCCTAGGCTAA
1 GCATACAGAGTTCATCCCTAGGCTAA
* * *
17063268 GCATACAGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGGCTAA
17063294 G
1 G
17063295 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGGCTAA
Found at i:17063663 original size:159 final size:158
Alignment explanation
Indices: 17063268--17063802 Score: 422
Period size: 159 Copynumber: 3.4 Consensus size: 158
17063258 CCTAGGCTAA
* * * * * *
17063268 GCATACAGAGTTCTTTCCTAGTCTAAGATCAAATCAGACCGAGGGTTGCGACAGCAGGATC-AGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGA-T
* * * * * * * *
17063332 AGGACGCAGG-GGGGACC-GAGCCGATCCCCGGCTTACGCATTCTACCTTTCCGACCAGCTGAGC
65 AGCACGCAGGAGGGGACCGGA-CCGATCCCTGGCTTGCGCATTCTGCCTCTCAG-TCGGCTGAGC
* * * * *
17063395 GCCCGCACGCCCATTTGGTGGGTTGGTTTAG
128 ACCCGTACGCTCATTTCGTGGGTTGGCTTAG
** ** * *
17063426 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-G
** * * * * *
17063488 GCAGCACGTAGAAGGGGACCGGACCGATCCCTGACTTGCGCATTATGCCTCCTCAGTCGGCTCAG
63 ATAGCACGCAGGAGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCT-CTCAGTCGGCTGAG
* * *
17063553 CACCCGTATGCTCATTTCATGGGTTGAG-TTAT
127 CACCCGTACGCTCATTTCGTGGGTTG-GCTTAG
*
17063585 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
17063650 GCACACAGGAGGGGACCAGG-TCGGT-CCTCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGC
66 GCACGCAGGAGGGGACC-GGACCGATCCCT-GGCTTGCGCATTCTGCCTCT-CAGTCGGCTGAGC
* * *
17063713 ACCTGTACGCTCGTTTTGTGGGTTGGCTTAG
128 ACCCGTACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * ** * *
17063744 GCATACGGAGCTCATTCCAAGTCTAAGCCCCGGCCGGACCCAGGGTTGTGGTAGCAGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGA
17063803 CCGGCAGTGG
Statistics
Matches: 292, Mismatches: 70, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 57 0.20
159 220 0.75
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGAGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCAGTCGGCTGAGCACC
CGTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:17063957 original size:26 final size:26
Alignment explanation
Indices: 17063928--17063980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17063918 GTTGACTTAG
17063928 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17063954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17063980 G
1 G
17063981 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17064149 original size:26 final size:26
Alignment explanation
Indices: 17064113--17064165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17064103 GTTGGCTTAG
17064113 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17064139 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17064165 G
1 G
17064166 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17065553 original size:26 final size:26
Alignment explanation
Indices: 17065517--17065569 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17065507 GTTGACTTAG
*
17065517 GCATACAGAGTTCA-TCCCCAGTGTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
*
17065543 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
17065569 G
1 G
17065570 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17066238 original size:26 final size:26
Alignment explanation
Indices: 17066202--17066253 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17066192 GTTGACTTAG
17066202 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
17066228 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17066254 CATCATACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17067123 original size:26 final size:26
Alignment explanation
Indices: 17067086--17067138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17067076 GTTGACTTAG
17067086 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
17067112 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17067138 G
1 G
17067139 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17067604 original size:26 final size:26
Alignment explanation
Indices: 17067574--17067626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17067564 GTTGGGTTAG
17067574 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
17067600 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
17067626 G
1 G
17067627 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:17068835 original size:26 final size:26
Alignment explanation
Indices: 17068799--17068851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17068789 GTTGACTTAG
17068799 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
17068825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17068851 G
1 G
17068852 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17069466 original size:26 final size:26
Alignment explanation
Indices: 17069429--17069481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17069419 GTTGACTTAG
*
17069429 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17069455 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17069481 G
1 G
17069482 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17070171 original size:26 final size:26
Alignment explanation
Indices: 17070140--17070192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17070130 GTTGGCTTAG
*
17070140 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17070166 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17070192 G
1 G
17070193 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17070523 original size:26 final size:26
Alignment explanation
Indices: 17070487--17070536 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17070477 TAATTTAGTT
17070487 ATACAGAGTTCA-TCACCAATCTAACC
1 ATACAGAGTTCATTC-CCAATCTAACC
*
17070513 ATACGGAGTTCATTCCCAATCTAA
1 ATACAGAGTTCATTCCCAATCTAA
17070537 GATTGGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAACC
Found at i:17070863 original size:26 final size:25
Alignment explanation
Indices: 17070827--17070878 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17070817 TTTGGCTTAG
17070827 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
17070853 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
17070878 G
1 G
17070879 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:17071857 original size:26 final size:26
Alignment explanation
Indices: 17071827--17071877 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17071817 GTTGACTTAA
*
17071827 GCATACATAGTTCA-TCCCTAGTCTAC
1 GCATACAGAGTTCATTCCC-AGTCTAC
*
17071853 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
17071878 AGATCGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAC
Found at i:17072537 original size:159 final size:156
Alignment explanation
Indices: 17072173--17072670 Score: 464
Period size: 159 Copynumber: 3.1 Consensus size: 156
17072163 CCCAGTCTAA
* ** * *
17072173 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * * * * * * *
17072238 GCACACAGGGGGGATCGAGCCGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACC
66 GCACAGA-GGGGGATTGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCC
* * * *
17072303 CGTACACCCGATTCGTGGGTTGGCTTAG
129 TGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
17072331 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGTAGCGGGATCAA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAA
* *
17072394 CAGCACGTAGAGAGGGATTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACC-AGCTCAG
64 CAGCAC--AGAGGGGGATTGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGA-CTCAG
* *
17072458 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
125 CGCCTGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17072490 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAACAGGATCCACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAACA
* * * * *
17072555 TCACAGAGGGGAGGAATAGGCC-AGTCCCTGACTTGCGCATTCTGCCTCTCCGATCGACTGAACA
66 GCACAGA-GGG-GGATTGGGCCGA-TCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACT---CA
* *
17072619 CCCGCATGTACGCTCGTTTCGTGGGTTGGCTTAG
124 -GCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAG
*
17072653 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
17072671 ATTTCGAAGC
Statistics
Matches: 273, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.02
158 60 0.22
159 153 0.56
160 6 0.02
162 2 0.01
163 46 0.17
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCAACA
GCACAGAGGGGGATTGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCTG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17073347 original size:159 final size:159
Alignment explanation
Indices: 17073136--17073540 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 159
17073126 CCTCGGCTTA
* * *
17073136 CGCATTCTACCTCTCCGATTGGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAG
* * * * * * * *
17073201 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGCGGTAGCGGGACC-AGTAGCAC
66 GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGATACCAGGACCGA-CAACAC
* * **
17073264 GTAAAGGGGGA-CTGGGTCGATCCTTGACTTG
130 AT-AAGGGGGATC-GAGTCGATCCCCGACTTG
* * * * * * *
17073295 CGCATTATGCCTCTTCGATTGGCTCAGCGCCCGCACGCTCATTTCGTCGGTTGACTTATGCAT-G
1 CGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAG
* * *
17073359 CGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCGAGGGTTGTGATACCAGGATCGACAACA
66 -GGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGCGATACCAGGACCGACAACA
* *
17073422 CATAGGGGGGATCGAGTCGATCCCCGGCTTG
129 CATAAGGGGGATCGAGTCGATCCCCGACTTG
* * * * * *
17073453 TGCATTCTGCCTCTCCGACTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAG
*
17073518 GGAGTTCAATCCATGTCTAAGCA
66 GGAGTTCATTCCATGTCTAAGCA
17073541 TACGGAGTTC
Statistics
Matches: 198, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 96 0.48
159 101 0.51
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCGATACCAGGACCGACAACACA
TAAGGGGGATCGAGTCGATCCCCGACTTG
Found at i:17073562 original size:26 final size:26
Alignment explanation
Indices: 17073512--17073564 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17073502 GTTGGCTTAG
*
17073512 GCATACGGAGTTCAATCCATGTCTAA
1 GCATACGGAGTTCAATCCATATCTAA
*
17073538 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCAAT-CCATATCTAA
17073564 G
1 G
17073565 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATATCTAA
Found at i:17074264 original size:26 final size:26
Alignment explanation
Indices: 17074235--17074287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17074225 GTTGACCTAG
*
17074235 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAATTCATCCCCAATCTAA
* *
17074261 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAATCTAA
17074287 G
1 G
17074288 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAATCTAA
Found at i:17074454 original size:26 final size:26
Alignment explanation
Indices: 17074418--17074470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17074408 GTTGGCTTAG
17074418 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17074444 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17074470 G
1 G
17074471 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17074469 original size:183 final size:183
Alignment explanation
Indices: 17074161--17074628 Score: 643
Period size: 183 Copynumber: 2.6 Consensus size: 183
17074151 TACCACCCGT
* * * * *
17074161 TCGATCCCTGGCTTGTGCATCCTGCCTCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGG
* * * *
17074226 TTGACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAATTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATC
* * * *
17074291 -AGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGGGGGACCAGG
131 GA-ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCAAG
* * ** * * *
17074344 TCGATCCCCGGCTTGCGCATTCTCCCTCTCCGACCGGCTCAGCGCCCGCACACTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGG
*
17074409 TTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATC
17074474 GAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCAAG
131 GAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCAAG
* * * * * *
17074527 CCGAACCCCGACTTACGCATTCTGCCTCTCTGGTCGACTAAGCACCCGCACGCCCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGG
* *
17074592 TTGGCTTAGGCATAGAGAGTTCAT-TCCATGTCTAAGC
66 TTGGCTTAGGCATACAGAGTTCATCCCCA-GTCTAAGC
17074629 CCCAGCTGGA
Statistics
Matches: 248, Mismatches: 35, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
182 3 0.01
183 244 0.98
184 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (183 bp):
TCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATC
GAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGACCAAG
Done.