Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 117 of 138
Found at i:17074748 original size:159 final size:157
Alignment explanation
Indices: 17074444--17074945 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 157
17074434 CCCAGTCTAA
** * * * * * * *
17074444 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATC-GA
1 GCATA-GGAGTTCATT-CCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACCAG-
** * * *
17074507 CAGCACGC--AGGGGGACCAAGCCGAACCCCGACTTACGCATTCTGCCTCTCTGGTCGACTAAGC
63 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGACTGAGT
*
17074570 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACG-CCGTTTCGTGGGTTGGCTTAG
*** * *
17074601 GCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCAGCA
1 GCATAG-GAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACCAGCA
* * * * * *
17074666 GCACGCAGAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGTGC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGACTGAGTGC
* *
17074731 CCCCACGTCCGTTTCGTGGGTTGGTTTAG
130 CCGCACG-CCGTTTCGTGGGTTGGCTTAG
* * * * * * ** *
17074760 GCATAGGGAGTTCATTCTATTTGTAAACCCCAGCCAAACCGAGGGTTGTGATAGCAGGACTGGTA
1 GCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACCAGCA
* * * * **
17074825 GCATGCAGAGGGGGACCGGGCTGATACCC-AGCTTATGCATTCTGTTTCTCTGGTCGACTGAGTG
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTACGCATTCTGCCTCTCTGGTCGACTGAGTG
* * *
17074889 CCCGCACGCTTGTTTCAT-GGTTAGCTTAG
129 CCCGCACGC-CGTTTCGTGGGTTGGCTTAG
*
17074918 GCATACGGAGTTCGTTCCATGTCTAAGC
1 GCATA-GGAGTTCATTCCATGTCTAAGC
17074946 ATACGGAGTT
Statistics
Matches: 275, Mismatches: 62, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
156 4 0.01
157 53 0.19
158 34 0.12
159 183 0.67
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCAAGGGTTGTGACAGCAGGACCAGCAG
CACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGACTGAGTGCC
CGCACGCCGTTTCGTGGGTTGGCTTAG
Found at i:17076243 original size:159 final size:158
Alignment explanation
Indices: 17075992--17076360 Score: 366
Period size: 158 Copynumber: 2.3 Consensus size: 158
17075982 GAGCGTCCGT
* * * * * ** **
17075992 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAGGCCCCA-ACTGGAC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAG-ATCAGACCAGAC
** * * * * * *
17076056 TGAGGGTTGTGGTAGTAGGACTAGTAGCATGCAAAGGGAGACCGGGTTAATCCCCGGCTTGCACA
65 CAAGGGTTGTGATAGCAGGACGAGTAGCACG-AAAGGGAGACCGGGCTAATCCCCGGCTTACACA
* * *
17076121 TTATGCCTTTTCGACTGGCTCAACACCCGC
129 TTATGCCTCTCCGACTAGCTCAACACCCGC
* * *
17076151 ACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCAGAC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCAT-GTCTAAGATCAGACCAGAC
* * * * * **
17076215 CAAGGGTTGTGATAGCAGGATCGA-TAGCACGTAGGGGGGACCGGGCTGATCCTCGGCTTATGCA
65 CAAGGGTTGTGATAGCAGGA-CGAGTAGCACGAAAGGGAGACCGGGCTAATCCCCGGCTTACACA
* * *
17076279 TTCTGCCTCTCCGACTAGCTGAGCACCCGC
129 TTATGCCTCTCCGACTAGCTCAACACCCGC
* *
17076309 ACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAG
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAG
17076361 CATACAGAGT
Statistics
Matches: 170, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 96 0.56
159 72 0.42
160 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (158 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGATCAGACCAGACC
AAGGGTTGTGATAGCAGGACGAGTAGCACGAAAGGGAGACCGGGCTAATCCCCGGCTTACACATT
ATGCCTCTCCGACTAGCTCAACACCCGC
Found at i:17077087 original size:26 final size:26
Alignment explanation
Indices: 17077057--17077193 Score: 127
Period size: 26 Copynumber: 5.0 Consensus size: 26
17077047 GTTGACTTAG
*
17077057 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
17077083 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
17077109 GCATACGGAGTTCATTCCATGGGT-TGGATTA
1 GCATACGGAGTTCA-TCCCT-AGTCT--A--A
*
17077140 GGCATACGGAGTTCATTCC-ATGTCTAA
1 -GCATACGGAGTTCATCCCTA-GTCTAA
17077167 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
17077193 G
1 G
17077194 ATCAGACTGG
Statistics
Matches: 92, Mismatches: 9, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
26 59 0.64
27 9 0.10
28 2 0.02
29 2 0.02
30 2 0.02
31 4 0.04
32 14 0.15
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17079429 original size:159 final size:157
Alignment explanation
Indices: 17079251--17079615 Score: 387
Period size: 158 Copynumber: 2.3 Consensus size: 157
17079241 CCTAAACACC
** * * *
17079251 CGTTTCATCAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAT-ATCGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-AC-TGACCGAGG
* * * * *** *
17079315 GTTGTGCCAGT-GGGTCCGACAGCACGCAGAGGGGGATTGGGTCGATCCTCAGCTTGCGCATTAT
64 GTTGCGCCAGTAGGAT-CGACAGCACACAG-GAGGGACCAGGTCGATCCCCAGCTTGCGCATTAT
* *
17079379 GCCTCTCCGACCGGCTT-AGCACCCGTACGTT
127 GCCTCTCCGACCGG-TTGAGCACCCGCACGGT
* * * ** *
17079410 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCA-GTCTAAGATCGAACTGGACCGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAACT-GACCGAGG
* * *
17079474 GTTGCGGCAGTAGGATCGATAGCACACAGGAGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGC
64 GTTGCGCCAGTAGGATCGACAGCACACAGGAGGGACCAGGTCGATCCCCAGCTTGCGCATTATGC
*
17079539 CTCTCCGACCGGTTGAGCGCCCGCACGGT
129 CTCTCCGACCGGTTGAGCACCCGCACGGT
* * *
17079568 CGTTTCATGGGTTGGCTTACGCATACGGAGTTTATTCCCTGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17079616 ATACGGAGTT
Statistics
Matches: 168, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.04
158 91 0.54
159 64 0.38
160 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGACCGAGGGT
TGCGCCAGTAGGATCGACAGCACACAGGAGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCT
CTCCGACCGGTTGAGCACCCGCACGGT
Found at i:17079617 original size:26 final size:26
Alignment explanation
Indices: 17079588--17079640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17079578 GTTGGCTTAC
* *
17079588 GCATACGGAGTTTATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17079614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17079640 G
1 G
17079641 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17080005 original size:26 final size:26
Alignment explanation
Indices: 17079969--17080020 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17079959 ATGACTTAGT
* *
17079969 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
*
17079995 CATACGAAGTTCATTCCCAATCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
17080021 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAG
Found at i:17081167 original size:26 final size:26
Alignment explanation
Indices: 17081137--17081186 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17081127 GGCTTAGGCA
17081137 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
17081163 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17081187 ATAGGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17081367 original size:26 final size:26
Alignment explanation
Indices: 17081330--17081382 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17081320 GTTGACTTAG
*
17081330 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
*
17081356 GCATAC-GAAGTTCATTCCAAGTCTAA
1 GCATACAG-AGTTCATCCCAAGTCTAA
17081382 G
1 G
17081383 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:17081370 original size:196 final size:196
Alignment explanation
Indices: 17081025--17081417 Score: 481
Period size: 196 Copynumber: 2.0 Consensus size: 196
17081015 CGAGGGTTAT
* * ** * * *
17081025 GACAGTAGGATTGATAGCACGTAGGGGGGATCGGGCCACTCCCCGGCTTGCACATTCTGCCTCTC
1 GACAGTAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTGCCTCTC
* * * * *
17081090 CGATCGACTGAATGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGACCGACTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATG
* * * * * *
17081155 TCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATAGGA-TCGAATCGAGGGTTACGGCAGCAGGA
131 TCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACT-GAATCGAGGGTTACGGCAACAGGA
17081219 TC
195 TC
* * *
17081221 GACAGTAGGATCGACAGCACACAGGGGGGACCAGGTCAATCCCCGGTTTGCCCATTCTGCCTCTC
1 GACAGTAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTGCCTCTC
* * *
17081286 C-AGCCGGCTG-A-GCTCCGGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC
66 CGA-CCGACTGAATGC-CC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CC
*
17081348 CA-GTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACTGGATCGAGGGTTACGGCAACA
127 CATGTCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACTGAATCGAGGGTTACGGCAACA
17081412 GGATC
192 GGATC
17081417 G
1 G
17081418 GTAGCACGTT
Statistics
Matches: 167, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
194 2 0.01
195 4 0.02
196 157 0.94
197 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
GACAGTAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCACATTCTGCCTCTC
CGACCGACTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATG
TCTAAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACTGAATCGAGGGTTACGGCAACAGGAT
C
Found at i:17082760 original size:366 final size:353
Alignment explanation
Indices: 17082202--17082920 Score: 752
Period size: 366 Copynumber: 2.0 Consensus size: 353
17082192 GAGGGTTGCA
* * * * *
17082202 ACAGCAGGATCGACAGCACGCAGGGGGGACCATGCCAGTCCTCGACTTGCACATTCTGCCTCTTC
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCACATTATGCCTATCC
* * * * * *
17082267 AGTCGACTGGGCACCCACACGCTCATTTTATGGGTTGGCTTCAGCATAAGGTGTTCATTCCATGT
66 AGCCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTCAGCATAAGGAGTTCATCCCATGT
* * * *
17082332 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGACC
131 CTAAGCATACAGACTTCATTCCAAGTCTAAGATCAGACCGAACTGAGGGTTGCGG--G-A-G--C
* * *
17082397 AATAGCAAGATTGGCAACACGCAGGGGGGATTAGGCCGATCCCCAGCTTGCGCA-TCTGCCTCTT
190 ---AG---GATCGGCAACACGCAGGGGGGA-TAGGCCGATACCCAGCTTGCGCATTCTGCCTCTC
* ** * * *
17082461 CGGTCGGTTGAGCACCTGCATG-CTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCAT
248 CGGCCGACTGAGCACCCGCATGCCT-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* *
17082525 GTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCAGGACCG
312 GTCTAAGCCCCAGTCAGAAC-GAGGGTTGTGGCAGCAGGACCG
* * * ** *
17082567 ACAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCTAATCCTCGGTTTGCGCATTATGCCTATC
1 ACAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCCAATCCTCGACTTGCACATTATGCCTATC
* * *
17082632 C-GACCGACTGAGCACCCGCATGCTCGTTTCATGGGTTGACTT-AGGCATACA-GAGTTCATCCC
65 CAG-CCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTCA-GCATA-AGGAGTTCAT-CC
* ** *
17082694 CA-GTGTAAGCATAC-GAACTTCATTCCAAGTCTAAGATTGGACCGAACTGAGGGTTGTGGGAGC
126 CATGTCTAAGCATACAG-ACTTCATTCCAAGTCTAAGATCAGACCGAACTGAGGGTTGCGGGAGC
* * * * *
17082757 AGGATCGGTAGCACGCAGGGGGGATGGGCCGATATCCGGCTTGCGCATTCTGCCTCTCCGGCCGA
190 AGGATCGGCAACACGCAGGGGGGATAGGCCGATACCCAGCTTGCGCATTCTGCCTCTCCGGCCGA
** **
17082822 CTGAGTGCCCGCATGCCTATTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGC
255 CTGAGCACCCGCATGCCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
17082887 CCTAGTCAGAACGAGGGTTGTGGCAGCAGGACCG
320 CCCAGTCAGAACGAGGGTTGTGGCAGCAGGACCG
17082921 GTAGCACGTA
Statistics
Matches: 296, Mismatches: 49, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
353 19 0.06
354 113 0.38
355 6 0.02
357 2 0.01
360 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
365 25 0.08
366 123 0.42
367 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (353 bp):
ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCGACTTGCACATTATGCCTATCC
AGCCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTCAGCATAAGGAGTTCATCCCATGT
CTAAGCATACAGACTTCATTCCAAGTCTAAGATCAGACCGAACTGAGGGTTGCGGGAGCAGGATC
GGCAACACGCAGGGGGGATAGGCCGATACCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
ACCCGCATGCCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
CAGAACGAGGGTTGTGGCAGCAGGACCG
Found at i:17083062 original size:159 final size:158
Alignment explanation
Indices: 17082702--17083690 Score: 728
Period size: 159 Copynumber: 6.2 Consensus size: 158
17082692 CCCAGTGTAA
* * * ** * * *
17082702 GCATACGAACTTCATTCCAAGTCTAAGATTGGACCGAACTGAGGGTTGTGGGAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * *
17082767 GCACGCAGGGGGGA-TGGGCCGATATCC-GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGC
66 GCACGTAGGGGGGACCGGACCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* * *
17082830 CCGCATGC-CTATTTCGTGGGTTGGCTTAG
130 CCGAATGCTC-GTTTCATGGGTTGGCTTAG
** ** * * * * *
17082859 GCATTGGGAGTTCATT-CCATGTCTAAGCCCTAGTCAGAAC-GAGGGTTGTGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
17082922 TAGCACGTAGAGGGGGACCGGGCCGATCCTTAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGT
64 TAGCACGTAG-GGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
* * * ** *
17082987 GCTCGAACGTTCGTTTCATGCATTGACTTAG
128 GCCCGAATGCTCGTTTCATGGGTTGGCTTAG
* *
17083018 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
17083083 GCACGCAGGGGGGGACTGGATCGATCCCT-GCATTGTGCATTCTGCCTCTTCGGCTGGCTGAGCG
66 GCACGTA-GGGGGGACCGGACCGATCCCTGGC-TTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
* * * * *
17083147 CCCGCACGCTCATTTCGTGAGTTGGCTTAG
129 CCCGAATGCTCGTTTCATGGGTTGGCTTAG
* *
17083177 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGATAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-T----T-GT--G----GCA
* * * * * *
17083242 GCAGGATCGGTAGCACGTAGGGGGGACCGAACCGGTCCCCGGCTTACGCATTCTGCCTCTCTGGC
54 GCAGGATCGATAGCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC
* * *
17083307 CGGATGAGCGTCC-ACATGCTCGTTTCATGGGTTGGCTTAG
119 TGGCTGAGCGCCCGA-ATGCTCGTTTCATGGGTTGGCTTAG
* * ** * ** * * *
17083347 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACTGGACCAATGGTTGTGGCAG-TGGAACTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATC-G
* * * * * * *
17083409 ACAGCACTTAGAGGGGGACCGGACCGGTCCCTGGCTTGCGCATTATACCTCTACGGCTGGCTCAG
63 ATAGCACGTAG-GGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAG
*
17083474 CGCCCGAATGCTCGTTT-AGTGGGTTGACTTAG
127 CGCCCGAATGCTCGTTTCA-TGGGTTGGCTTAG
* ** *
17083506 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGAT
** * *** * * * * * *
17083570 AGCACGTATAGCGGACTAAACCGAT-CCTCGGCTTGCGCATTCTACCTCTTCGACAGGTTGAGCA
65 AGCACGTAGGGGGGACCGGACCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
* *
17083634 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGAATGCTCGTTTCATGGGTTGGCTTAG
*
17083664 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17083691 CATAAAGAGT
Statistics
Matches: 651, Mismatches: 144, Indels: 73
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.00
157 59 0.09
158 121 0.19
159 325 0.50
160 14 0.02
162 1 0.00
164 3 0.00
165 3 0.00
167 1 0.00
169 4 0.01
170 96 0.15
171 22 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATA
GCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
CGAATGCTCGTTTCATGGGTTGGCTTAG
Found at i:17083503 original size:488 final size:486
Alignment explanation
Indices: 17082754--17083690 Score: 1152
Period size: 488 Copynumber: 1.9 Consensus size: 486
17082744 GGGTTGTGGG
* ** * *
17082754 AGCAGGATCGGTAGCACGCAGGGGGGATGGGCCGATATCCGGCTTGCGCATTCTGCCTCTCCGGC
1 AGCAGGATCGGTAGCACGCAGGGGGGACGAACCGATACCCGGCTTACGCATTCTGCCTCTCCGGC
* * * *
17082819 CGACTGAGTGCCCGCATGCCTATTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTA
66 CGACTGAGCGCCCACATGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * ** *
17082884 AGCCCTAGTCAGAACGAGGGTTGTGGCAGCAGGACCGGTAGCACGTAGAGGGGGACCGGGCCGAT
131 AGCCCAACTCAGAACAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGACCGAT
* * * * * *
17082949 CCTTAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGTGCTCGAACGTTCGTTTCATGCATTGAC
196 CCCTAGCTTGCGCATTATACCTCTACAGCTGGCTCAGCGCCCGAACGCTCGTTTCATGCATTGAC
* * **
17083014 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGTGGCAGCAGGAT
261 TTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCAGCAGCAGGAT
* * ** * * * * * *
17083078 CGACAGCACGCAGGGGGGGACTGGATCGATCC-CTGCATTGTGCATTCTGCCTCTTCGGCTGGCT
325 CGACAGCACGCA-GAGCGGACTAAACCGATCCTCGGC-TTGCGCATTCTACCTCTTCGACAGGCT
* * *
17083142 GAGCGCCCGCACGCTCATTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT
388 GAGCACCCGCACGCTCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGAT
17083206 TAGACCGGACCGAGGGTTACGATAGTAGGACCAGC
452 TAGACCGGACCGAGGGTTACGATAGTAGGACCAGC
* * * *
17083241 AGCAGGATCGGTAGCACGTAGGGGGGACCGAACCGGTCCCCGGCTTACGCATTCTGCCTCTCTGG
1 AGCAGGATCGGTAGCACGCAGGGGGGA-CGAACCGATACCCGGCTTACGCATTCTGCCTCTCCGG
* * *
17083306 CCGGA-TGAGCGTCCACATG-CTCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGT
65 CC-GACTGAGCGCCCACATGCCT-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * *
17083369 CTAAGCCCCAACT-GGACCAATGGTTGTGGCAG-TGGAACTGACAGCACTTAGAGGGGGACCGGA
128 CTAAG-CCCAACTCAGAACAAGGGTTGTGGCAGCAGG-ACCGACAGCACGTAGAGGGGGACCGGA
* * * * *
17083432 CCGGTCCCTGGCTTGCGCATTATACCTCTACGGCTGGCTCAGCGCCCGAATGCTCGTTT-AGTGG
191 CCGATCCCTAGCTTGCGCATTATACCTCTACAGCTGGCTCAGCGCCCGAACGCTCGTTTCA-TGC
* *
17083496 GTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGC
255 ATTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGC
* * *
17083561 AGGATCGATAGCACGTATAGCGGACTAAACCGATCCTCGGCTTGCGCATTCTACCTCTTCGACAG
320 AGGATCGACAGCACGCAGAGCGGACTAAACCGATCCTCGGCTTGCGCATTCTACCTCTTCGACAG
* * *
17083626 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
385 GCTGAGCACCCGCACGCTCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
17083691 CATAAAGAGT
Statistics
Matches: 377, Mismatches: 64, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
486 3 0.01
487 119 0.32
488 247 0.66
489 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (486 bp):
AGCAGGATCGGTAGCACGCAGGGGGGACGAACCGATACCCGGCTTACGCATTCTGCCTCTCCGGC
CGACTGAGCGCCCACATGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCAACTCAGAACAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGACCGAT
CCCTAGCTTGCGCATTATACCTCTACAGCTGGCTCAGCGCCCGAACGCTCGTTTCATGCATTGAC
TTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATC
GACAGCACGCAGAGCGGACTAAACCGATCCTCGGCTTGCGCATTCTACCTCTTCGACAGGCTGAG
CACCCGCACGCTCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGATTAGA
CCGGACCGAGGGTTACGATAGTAGGACCAGC
Found at i:17083715 original size:26 final size:26
Alignment explanation
Indices: 17083664--17083716 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17083654 GTTGGCTTAG
* *
17083664 GCATACAGAGTTCATTCCATGTCTAA
1 GCATAAAGAGTTCATTCCATGACTAA
17083690 GCATAAAGAGTTCATTCCCA-GACTAA
1 GCATAAAGAGTTCATT-CCATGACTAA
17083716 G
1 G
17083717 ATCAGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCATGACTAA
Found at i:17084073 original size:26 final size:26
Alignment explanation
Indices: 17084044--17084096 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17084034 GTTCACTTAG
17084044 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17084070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17084096 G
1 G
17084097 ATCGAACTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17085593 original size:26 final size:26
Alignment explanation
Indices: 17085557--17085609 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17085547 GTTGACTTAG
17085557 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
17085583 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17085609 G
1 G
17085610 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17085790 original size:26 final size:26
Alignment explanation
Indices: 17085740--17085792 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17085730 GTTGGCTTAG
* *
17085740 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
17085766 GCATACGGAGTTCATGCCCAT-TCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
17085792 G
1 G
17085793 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:17086473 original size:26 final size:26
Alignment explanation
Indices: 17086437--17086489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17086427 GTTGACTTAG
17086437 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17086463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17086489 G
1 G
17086490 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17086751 original size:159 final size:158
Alignment explanation
Indices: 17086504--17086807 Score: 430
Period size: 159 Copynumber: 1.9 Consensus size: 158
17086494 GACCGGACCA
* * ** *
17086504 AGGGTTGCGGCAGTAGGATCGGCAGCACACAAGGGGGACTGGGCCAATCCCCGCCTTGCGCATTC
1 AGGGTTGCGGCAGTAGGACCGACAGCACACAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTC
* * ** *
17086569 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTT
17086633 CATTCCATGTCTAAGCGCCAGCTGGATTG
130 CATTCCATGTCTAAGCGCCAGCTGGATTG
* * * * *
17086662 AGGGTTGTGGCAGTGGGACCGACAGCACATAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATT
1 AGGGTTGCGGCAGTAGGACCGACAGCACACA-AGGGGGACCAGGCCAATCCCCGACTTGCGCATT
* *
17086727 CTACCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
65 CTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
17086792 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
17086808 ATATGGAGTT
Statistics
Matches: 127, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 26 0.20
159 100 0.79
160 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (158 bp):
AGGGTTGCGGCAGTAGGACCGACAGCACACAAGGGGGACCAGGCCAATCCCCGACTTGCGCATTC
TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCGCCAGCTGGATTG
Found at i:17086810 original size:26 final size:26
Alignment explanation
Indices: 17086780--17086832 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17086770 GTTGGCTTAG
17086780 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17086806 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17086832 G
1 G
17086833 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17087531 original size:26 final size:26
Alignment explanation
Indices: 17087489--17087544 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17087479 TGGGTTGACT
* *
17087489 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAATTCATCCCCAATC
* *
17087515 TAAGCATATAGAATTCATTCCCAATC
1 TAAGCATACAGAATTCATCCCCAATC
17087541 TAAG
1 TAAG
17087545 ATCGCACAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAATTCATCCCCAATC
Found at i:17087885 original size:26 final size:26
Alignment explanation
Indices: 17087834--17087886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17087824 GTTGGCTTAG
*
17087834 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
17087860 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
17087886 G
1 G
17087887 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:17088904 original size:26 final size:26
Alignment explanation
Indices: 17088856--17088908 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17088846 GTTGACTTAG
* *
17088856 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCAAGTCTAA
**
17088882 GCATACGGAATTCATTTCAAGTCTAA
1 GCATACGGAATTCATCCCAAGTCTAA
17088908 G
1 G
17088909 ATCATAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCAAGTCTAA
Found at i:17089387 original size:26 final size:26
Alignment explanation
Indices: 17089357--17089409 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17089347 GTTGGCTTAG
17089357 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
17089383 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17089409 G
1 G
17089410 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17090758 original size:26 final size:26
Alignment explanation
Indices: 17090720--17090771 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17090710 GTTGGCTTAG
17090720 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17090746 GCATACAGG-GTTCGTTCCTAGTCTAA
1 GCATAC-GGAGTTCATTCCTAGTCTAA
17090772 AATTTGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17091127 original size:26 final size:26
Alignment explanation
Indices: 17091075--17091127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17091065 GTTGGCTTGG
*
17091075 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
17091101 GCATGCAGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
17091127 G
1 G
17091128 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:17091618 original size:26 final size:26
Alignment explanation
Indices: 17091581--17091634 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17091571 AAAGGAAAAA
*
17091581 AGTTTGCACATTTTGCCTCTTTGACC
1 AGTTTGCACATTCTGCCTCTTTGACC
*
17091607 AGTTTGCGCATTCTGCCTCTTTGACC
1 AGTTTGCACATTCTGCCTCTTTGACC
17091633 AG
1 AG
17091635 CTGAGTGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.39
Consensus pattern (26 bp):
AGTTTGCACATTCTGCCTCTTTGACC
Found at i:17092476 original size:159 final size:159
Alignment explanation
Indices: 17092081--17092574 Score: 410
Period size: 159 Copynumber: 3.1 Consensus size: 159
17092071 CCCAATCTAA
* * * *
17092081 GCATACGGAGTTCATTCCTAGTCTAGGATCAGA-CTGAACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGAC
* *
17092145 AGCACGTA-GGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCAGCTGAGTG
65 AGCACGTAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAGCTCAGTG
** * *
17092209 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
130 CCCACACGCCCATTTCATGGGTTGACTTAG
* * * ** * * * *
17092239 GCCTAGGGAGTTTATTCC-ATGTCTAAGCCCTAG-CCGGACCAAGGGTTGTGGCAGCCGGA-CCA
1 GCATACGGAGTTCATTCCTA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
17092301 GCAGCATGTAGAGGGGGACCGGG-CTGGTCCCCGAGTTACGCATTATGCCTTTTCGGCC-GACTC
64 -CAGCACGTAGGGGGGGACCGGGTC-GATCCCCGACTTACGCATTATGCCTCTCCAGCCAG-CTC
* * * * * *
17092364 ATTGCCCACACTCTCATTTTATGGTTTGACTTAT
126 AGTGCCCACACGCCCATTTCATGGGTTGACTTAG
* *
17092398 GCATACGGAGTTCATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * ** * * * *
17092463 GCACGTAGGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCT-
66 GCACGTAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAGCTCAG-TG
* * * * *
17092527 CCCGCACGCTCGTTTCATGGTTTGGCTTAG
130 CCCACACGCCCATTTCATGGGTTGACTTAG
*
17092557 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17092575 ATGTTTAAGC
Statistics
Matches: 258, Mismatches: 65, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 52 0.20
159 197 0.76
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCAGCCAGCTCAGTGC
CCACACGCCCATTTCATGGGTTGACTTAG
Found at i:17093140 original size:21 final size:21
Alignment explanation
Indices: 17093114--17093161 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
17093104 GCCCCAGCGA
*
17093114 GACCGAGGGTTATGGCAGTCG
1 GACCGAGGGTTATGGCAGCCG
17093135 GACCGAGGGTTATGGCAGCCG
1 GACCGAGGGTTATGGCAGCCG
17093156 GACCGA
1 GACCGA
17093162 CAGCACGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.42, T:0.15
Consensus pattern (21 bp):
GACCGAGGGTTATGGCAGCCG
Found at i:17093450 original size:26 final size:26
Alignment explanation
Indices: 17093414--17093466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17093404 GTTGGCTTAG
*
17093414 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCAGTCCCA-GTCTAA
17093440 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
17093466 G
1 G
17093467 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:17093584 original size:184 final size:182
Alignment explanation
Indices: 17093258--17093625 Score: 463
Period size: 184 Copynumber: 2.0 Consensus size: 182
17093248 GTTGACTTAT
* * * * *
17093258 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAACTGAGGGTTGCTACAGTAGGATCGACAG
1 GCATACAGAGTTCAGTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGACAGCAGGATCGACAG
* * *
17093323 CACGCAGGGGGACCAGGCTGATTCCCTACTTACGCATTCTGCCTCTCCGGTGGACTGAGCGCCCA
66 CACGCAGGGGGACCAGGCCGATTCCCTACTTACGCATTCTGCCTCTCCAGTGGACTAAGCGCCCA
*
17093388 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** * * *
17093440 GCATACGGAGTTCAGTCCCAGTCTAAGATCGGACTGGACCGATGGTTGGGACAGCAGGATCGGCA
1 GCATACAGAGTTCAGTCCCAGTCTAAGATCAGAC-CAACCGAGGGTTGCGACAGCAGGATCGACA
* * *
17093505 GCACGCAGGGGGGACCGGGCCGA-T-CCTCAGCTTACGCATTCTGCCTCTCTAGTCGG-TTAAGC
65 GCACGCA-GGGGGACCAGGCCGATTCCCT-A-CTTACGCATTCTGCCTCTCCAGT-GGACTAAGC
* * * *
17093567 GCTCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAA
126 GCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17093624 GC
1 GC
17093626 CCCAGCGAGA
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
182 33 0.21
183 31 0.20
184 92 0.58
185 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACAGAGTTCAGTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGACCAGGCCGATTCCCTACTTACGCATTCTGCCTCTCCAGTGGACTAAGCGCCCA
CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17093639 original size:520 final size:520
Alignment explanation
Indices: 17092977--17093988 Score: 1643
Period size: 520 Copynumber: 1.9 Consensus size: 520
17092967 CCAAGTCTAA
* * *
17092977 GATCGGCAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTTTAGCCGAC
1 GATCGGCAGCACGCAGGGGGGACCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTAGCCGAC
* *
17093042 TAAGAGCCCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TAAGAGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
*
17093107 CCAGCGAGACCGAGGGTTATGGCAGTCGGACCGAGGGTTATGGCAGCCGGACCGACAGCACGCAA
131 CCAGCGAGACCGAGGGTTATGGCAGTCAGACCGAGGGTTATGGCAGCCGGACCGACAGCACGCAA
* * * * *
17093172 AAAGGGACTGAGTCGATCCTCGGCTTGCGCATTATGCCTCTTTGG-CTGGCTCAGTGCCCGCATG
196 AAAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC-GGCTCAGCGCCCGCACG
*
17093236 CTCATTTTGTGGGTTGACTTATGCATAC-AGAGTTCATTCTCAGTCTAAGATCAGACCAACTGAG
260 CTCATTTCGTGGGTTGACTTATGCATACGA-AGTTCATTCTCAGTCTAAGATCAGACCAACTGAG
* * * *
17093300 GGTTGCTACAGTAGGATCGACAGCACGCAGGGGGACCAGGCTGATTCCCTACTTACGCATTCTGC
324 GGTTGCTACAGTAGGATCGACAGCACGCAGAGGGACCAGGCTGATCCCCGACTTACACATTCTGC
**
17093365 CTCTCCGGTGGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTT-AGGCATACGGAGTTCAT
389 CTCTCCGGTCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGG-TTGAGGCATACGGAGTTCAT
17093429 TCCATGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACTGGACCGATGGTTGGGACAG
453 TCCATGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACTGGACCGATGGTTGGGACAG
17093494 CAG
518 CAG
* * **
17093497 GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTAGTCGGT
1 GATCGGCAGCACGCAGGGGGGACCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTAGCCGAC
* * * *
17093562 TAAGCGCTCGCACGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TAAGAGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
17093627 CCAGCGAGACCGAGGGTTATGGCAGTCAGACCGAGGGTTATGGCAGCCGGACCGACAGCACGCAA
131 CCAGCGAGACCGAGGGTTATGGCAGTCAGACCGAGGGTTATGGCAGCCGGACCGACAGCACGCAA
* * *
17093692 AAAGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCGCGC
196 AAAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
**
17093757 TCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCTCAGTCTAAGATTGGACCAACTGAGGG
261 TCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAACTGAGGG
* * * *
17093822 TTGCTACAGTAGGATCGACAGCACGTAGAGGGACCAGGTTGATCCCCGGCTTGCACATTCTGCCT
326 TTGCTACAGTAGGATCGACAGCACGCAGAGGGACCAGGCTGATCCCCGACTTACACATTCTGCCT
17093887 CTCCGGTCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGTTGAGGCATACGGAGTTCATTCC
391 CTCCGGTCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGTTGAGGCATACGGAGTTCATTCC
* *
17093952 ATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
456 ATGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGAT
17093989 TTTGAGCCAT
Statistics
Matches: 452, Mismatches: 37, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
519 2 0.00
520 448 0.99
521 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (520 bp):
GATCGGCAGCACGCAGGGGGGACCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTAGCCGAC
TAAGAGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCGAGACCGAGGGTTATGGCAGTCAGACCGAGGGTTATGGCAGCCGGACCGACAGCACGCAA
AAAGGGACTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAACTGAGGG
TTGCTACAGTAGGATCGACAGCACGCAGAGGGACCAGGCTGATCCCCGACTTACACATTCTGCCT
CTCCGGTCAACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGTTGAGGCATACGGAGTTCATTCC
ATGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACTGGACCGATGGTTGGGACAGCAG
Found at i:17093659 original size:21 final size:21
Alignment explanation
Indices: 17093628--17093681 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
17093618 GTCTAAGCCC
*
17093628 CAGCGAGACCGAGGGTTATGG
1 CAGCCAGACCGAGGGTTATGG
*
17093649 CAGTCAGACCGAGGGTTATGG
1 CAGCCAGACCGAGGGTTATGG
*
17093670 CAGCCGGACCGA
1 CAGCCAGACCGA
17093682 CAGCACGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.39, T:0.13
Consensus pattern (21 bp):
CAGCCAGACCGAGGGTTATGG
Found at i:17093970 original size:26 final size:26
Alignment explanation
Indices: 17093934--17093986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17093924 GTTGGTTGAG
17093934 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17093960 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17093986 G
1 G
17093987 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17094714 original size:26 final size:26
Alignment explanation
Indices: 17094667--17094719 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17094657 GTTGCCTTAG
* * *
17094667 GCATATGGATTTCATCCTCAGTTTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
17094693 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
17094719 G
1 G
17094720 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:17094889 original size:26 final size:26
Alignment explanation
Indices: 17094853--17094902 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17094843 TGGCTTAGGT
*
17094853 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTACCA-GTCTAAGC
17094879 ATACGAAGTTCATTACCAGTCTAA
1 ATACGAAGTTCATTACCAGTCTAA
17094903 TATTTTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGAAGTTCATTACCAGTCTAAGC
Found at i:17095601 original size:26 final size:26
Alignment explanation
Indices: 17095571--17095621 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17095561 GTTGACTTAG
* *
17095571 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17095597 GCATATAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
17095622 TGATCAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17095958 original size:159 final size:158
Alignment explanation
Indices: 17095597--17095972 Score: 366
Period size: 159 Copynumber: 2.4 Consensus size: 158
17095587 CCCAGTCTAA
* * * * ** *
17095597 GCATATAGAGTTCATTCCCAATCTATGATCAGACCGGACCGAGGGTTAC-GGCAGCAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAGGGTT-CTGGCAGCAGGACCGAC
* * * * * * * *
17095661 AGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGACTGGCTGAGCGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTAGCGCATTATGCCTCTCCGACCGACTCAGCGC
* * *
17095726 CCGCACGCCCGTTTCATGGGTTGCCTTGG
130 CCGCACGCCCATTTCATGGGTTGACTTAG
* ** * *
17095755 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGA-TCAAGGGTTCTGGCAGCGGGACCG
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACT-AAGGGTTCTGGCAGCAGGACCG
* * * *
17095817 GCAGCACGTAGAGGGGGACTGGGCCGATCCCCGACTAGTC-CATTATGCCTCTTCGACCGACTCA
63 ACAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTAG-CGCATTATGCCTCTCCGACCGACTCA
* * * *
17095881 GTGCCCGCACGCTCATTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCCCATTTCATGGGTTGACTTAG
* *
17095914 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAGGGTTGTGGCAGTAGGA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAGGGTTCTGGCAGCAGGA
17095973 TCAACAACAT
Statistics
Matches: 171, Mismatches: 38, Indels: 17
0.76 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 51 0.30
159 111 0.65
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAGGGTTCTGGCAGCAGGACCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTAGCGCATTATGCCTCTCCGACCGACTCAGCGCC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:17096828 original size:26 final size:26
Alignment explanation
Indices: 17096794--17096844 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17096784 TTGACTTTGG
*
17096794 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAATCTAAT
* *
17096820 CATATGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
17096845 GATTTGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAT
Found at i:17097203 original size:159 final size:157
Alignment explanation
Indices: 17096820--17097320 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 157
17096810 CCAGTCTAAT
* ** ** * * * * * ** *
17096820 CATATGGAGTTCATTCCCA-ATCTAAGATTTGACCAGACCGAGGGTTGCGACAGTAGGATTGGCA
1 CATACGGAGTTCATTCCCATATCTAAGATCCGGTCGGACTGAGGGTTGGGGCAGCAGGACCGACA
* * *
17096884 GCACGCAGGGGGGATCGGATCGATCCCCGGCTTGCGCAGTCTGC-CTGTCTGATCGGCTGAGCCC
66 GCACGCAGGGGGGATCGGGTCGAT-CCCGGCTTGCGCATTCTGCTCT-TC-GATCGGCTGAGCGC
* *
17096948 CCGCACGCCCGTTTCATGGGTTGGCTTAGG
128 CCGCACGCTCGTTTTATGGGTTGGCTTAGG
* * * * * * *
17096978 CATAGGGAGTTCATT-TCATGTCTAAGCTCCTGTCGGACTGAGGGTTGTGGCAGCGGGACCGACA
1 CATACGGAGTTCATTCCCATATCTAAGATCCGGTCGGACTGAGGGTTGGGGCAGCAGGACCGACA
* * * *
17097042 GCATGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGTCTCTTCGATCGGCTTAGCGC
66 GCACGCAG-GGGGGATCGGGTCGATCC-CGGCTTGCGCATTCTG-CTCTTCGATCGGCTGAGCGC
* * * *
17097107 CTGCACGCTCATTTTATGGTTTGACTTAGG
128 CCGCACGCTCGTTTTATGGGTTGGCTTAGG
* * * **
17097137 CATACGAAGTTCATTCCCA-ATCTAAGAT-CGGATCGGA-TCGAGGGTTGGGGCGGCAGGATCTT
1 CATACGGAGTTCATTCCCATATCTAAGATCCGG-TCGGACT-GAGGGTTGGGGCAGCAGGACCGA
* *** * * *
17097199 CAGCACGCAGGGGGGACCGGGTCGATCCCTAATTTACGCATTCTGCCTCTCCGATCGACTGAGCG
64 CAGCACGCAGGGGGGATCGGGTCGATCCC-GGCTTGCGCATTCTG-CTCTTCGATCGGCTGAGCG
* * *
17097264 CCCGCATGTTCGTTTTATGGGTTGGCTTAGT
127 CCCGCACGCTCGTTTTATGGGTTGGCTTAGG
*
17097295 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCATATCTAAG
17097321 CATACAGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 141 0.52
159 115 0.43
160 5 0.02
161 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCATATCTAAGATCCGGTCGGACTGAGGGTTGGGGCAGCAGGACCGACA
GCACGCAGGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCTCTTCGATCGGCTGAGCGCCCG
CACGCTCGTTTTATGGGTTGGCTTAGG
Found at i:17097319 original size:158 final size:158
Alignment explanation
Indices: 17096882--17097320 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 158
17096872 GTAGGATTGG
* * * * * *
17096882 CAGCACGCAGGGGGGATCGGATCGATCCCCGGCTTGCGCAGTCTGCCTGTCTGATCGGCTGAGCC
1 CAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * * * *
17096947 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCTCCTGTC
66 CCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCGGTC
* *
17097012 GGACTGAGGGTTGTGGCAGCGGGACCGA
131 GGACTGAGGGTTGGGGCAGCAGGACCGA
* * * * * *
17097040 CAGCATGTAGAGGGGGATCGGGTCGAT-CCTCGGCTTGCGCATTATGTCTCTTCGATCGGCTTAG
1 CAGCACGCAG-GGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * * * * *
17097104 CGCCTGCACGCTCATTTTATGGTTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGAT-CG
64 CGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCCG
* * **
17097167 GATCGGA-TCGAGGGTTGGGGCGGCAGGATCTT
128 G-TCGGACT-GAGGGTTGGGGCAGCAGGACCGA
* *** * *
17097199 CAGCACGCAGGGGGGACCGGGTCGATCCCTAATTTACGCATTCTGCCTCTCCGATCGACTGAGCG
1 CAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
17097264 CCCGCATGTTCGTTTTATGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAG
66 CCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17097321 CATACAGAGT
Statistics
Matches: 223, Mismatches: 51, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 98 0.44
159 120 0.54
160 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCGGTC
GGACTGAGGGTTGGGGCAGCAGGACCGA
Found at i:17097331 original size:26 final size:26
Alignment explanation
Indices: 17097295--17097346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17097285 TTGGCTTAGT
*
17097295 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACAGAGTTCATTCCTA-GTCTAAG
17097321 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
17097347 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAG
Found at i:17097533 original size:26 final size:26
Alignment explanation
Indices: 17097503--17097555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17097493 GTTGACTTAG
*
17097503 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
17097529 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
17097555 G
1 G
17097556 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:17097996 original size:159 final size:158
Alignment explanation
Indices: 17097668--17098190 Score: 482
Period size: 159 Copynumber: 3.3 Consensus size: 158
17097658 CCGTACGCCC
* * *
17097668 GTTTCGTGAGTTGGCATAGGCATA-GGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
* * * * * * * * * * *
17097732 TTATGGCAGCAGGACCGGCAGTATGCAGAAGAGGATCAGGTCGATCCCTGGCTAGAGCATTATGC
65 TTATGGTAGCAGGACCGACAGCACGTAGAGGA-GACCGGGTCGATCCCTAGCTTGCGCATTATGC
* * *
17097797 CTCTCTGGTCGGCTGAGCACCTGCGCGCCT
129 CTCTCTGGTCGGCTGAGCGCCTGCACGCTT
* * * **
17097827 G-TTCTGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCAGACTGAGGG
1 GTTTC-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
* * * *
17097891 TTGTGGTAGCGGGACCGATAGCACGTAGAGGTAGACCGGGTCGATCCCTAGCTTGCGTATTATGC
65 TTATGGTAGCAGGACCGACAGCACGTAGAGG-AGACCGGGTCGATCCCTAGCTTGCGCATTATGC
* * *
17097956 CTCTCCGGTCGGCTCAGCGCCCGCACGCTT
129 CTCTCTGGTCGGCTGAGCGCCTGCACGCTT
* * * ** * *
17097986 GTTTCATGGGTTGACTTAGGCGTACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCAAGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGG
* * * * * *
17098049 GTTACGGTAGCAGGATCGACAGCACGTAG-GGGGCACCGGGTCGGTCCC-AGGCTTACGCATTCT
64 GTTATGGTAGCAGGACCGACAGCACGTAGAGGAG-ACCGGGTCGATCCCTA-GCTTGCGCATTAT
* * * * *
17098112 GCCTCTCTGGCCAGTTGAGCGCCTGCATGCTC
127 GCCTCTCTGGTCGGCTGAGCGCCTGCACGCTT
* * *
17098144 GTTTTACGGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17098191 ATACAGTGTT
Statistics
Matches: 292, Mismatches: 62, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 90 0.31
159 188 0.64
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGT
TATGGTAGCAGGACCGACAGCACGTAGAGGAGACCGGGTCGATCCCTAGCTTGCGCATTATGCCT
CTCTGGTCGGCTGAGCGCCTGCACGCTT
Found at i:17098580 original size:26 final size:26
Alignment explanation
Indices: 17098543--17098595 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
17098533 GTTGGCTTAC
17098543 GCATACAGAGTTC-CTCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
*
17098569 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCACTCCCAGTCTAA
17098595 G
1 G
17098596 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17099048 original size:158 final size:157
Alignment explanation
Indices: 17098569--17099070 Score: 415
Period size: 158 Copynumber: 3.2 Consensus size: 157
17098559 CCTAGTCTAA
* * * *
17098569 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGCGGCAG-TAGGATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGAACTGAGGGTTGCGGCAGCT-GGATCGAT
* * * *
17098633 AGCACACAGGGGGGACCGGGCC-AGTCCCC-AGCTTACACATTCTGCCTCTTCGGTCGGCTGAGT
65 AGCACGCAAGGGGGACCGGGCCGA-TCCCCGA-CTTACGCATTCTGCCTCTTC-GCCGGCTGAG-
* * * ** *
17098696 GA-CTGCACGC-CTGTTTCGTTTGTTGCCTTAG
126 CACCCGCACGCTC-GTTTCATGGGTTGACTTAG
* * * * * * *
17098727 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGCA-TCGAACTGAGGGTTGCGGCAGCTGGATCGA
* * * * * * *
17098790 TAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTGTTCGACCGGCTCAGC
64 TAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCG-CCGGCTGAGC
* * * * * * * *
17098855 GCTCGCACACTTGTTTCCTGGATTGATTTAT
127 ACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
17098886 GCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGAACTGAAGGTTGCGACAGCTGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGAACTGAGGGTTGCGGCAGCTGGATCGATA
* * *
17098951 GCATGCAAGGGGCACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGCTGAGCACC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTC-GCCGGCTGAGCACC
* * *
17099016 CGCATGCTCATTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGACTTAG
** **
17099044 GCATATAGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
17099071 CATACAGAGT
Statistics
Matches: 262, Mismatches: 70, Indels: 24
0.74 0.20 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.53
159 110 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGCATCGAACTGAGGGTTGCGGCAGCTGGATCGATA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGCCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:17099074 original size:26 final size:26
Alignment explanation
Indices: 17099044--17099096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17099034 GTTGGCTTAG
* **
17099044 GCATATAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17099070 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17099096 G
1 G
17099097 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17099292 original size:514 final size:514
Alignment explanation
Indices: 17098670--17099782 Score: 1294
Period size: 514 Copynumber: 2.2 Consensus size: 514
17098660 CCAGCTTACA
* * * ** *
17098670 CATTCTGCCTCTTCGGTCGGCTGAGTGACT-GCACGC-CTGTTTCGTTTGTTGCCTTAGGCATAG
1 CATTCTGCCTCTCCGATCGGCTGAGCG-CTCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAG
* * *
17098733 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGA-TCGATAGCACG
64 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACT-GACAGCACG
* * * * * *
17098797 CAGAGGGGGACCGGG-TCGATCCTCGGCTTGCGCATTATGCCTGTTCGACCGGCTCAGCGCTCGC
128 CAGAGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGC
* * * *
17098861 ACACTTGTTTCCTGGATTGATTTATGCATACGGAGTTCATTCCCAGTCTAAGATC-GCATC-GAA
192 ACACTCGTTTCCTGGATTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAG-A
* *
17098924 CTGAAGGTTGCGACAGCT-GGATCGACAGCATGCA-AGGGGCACCGGGCCGATCCCCGACTTACG
255 CCGAAGGTTGCGACAG-TAGGATCGACAGCACGCAGAGGGGCACCGGGCCGATCCCCGACTTACG
* * * *
17098987 CATTCTGCCTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATATAG
319 CATTCTACCTCTCCAGCCAGCTAAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAG
* * ***
17099052 AGTTCATTCCTTGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGAGCGTT
384 AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGCGTT
* * * * * *
17099117 GCGACAGTATGACTAGCAGCAAGATCGACAGGATAC-AAGAGG-GGATCGGGCTGATCCTTGGCC
449 ACGACAGTAGGACCAGCAGCAAGATCGACA-G-CACGAAGAGGAGGACCGGGCCGATCC-TGGCC
17099180 TGTC
511 TGTC
*
17099184 CATTCTGCCTCTCCGATTGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
* * * *
17099249 AGTTAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAG
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAG
* * * *
17099314 AGGGGGACTGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTTAACGCCCGCACGC
131 AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACAC
* * *
17099379 TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
196 TCGTTTCCTGGATTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAG
* * * * * * * ** *
17099444 GTTGCGGCTGTAGGATCGACAGTACGTAGGGGGGCATCGGGTCGATCCTTGATTTACGCATTCTA
261 GTTGCGACAGTAGGATCGACAGCACGCAGAGGGGCACCGGGCCGATCCCCGACTTACGCATTCTA
* * * * * * *
17099509 CCTCTTCGGTCAGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
326 CCTCTCCAGCCAGCTAAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
** ** * *
17099574 TCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAAACTGGATCGAGGGTTACGACAG
391 TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGCGTTACGACAG
* ** * * * *
17099639 TAGGACCAGCAGTAAGATCGGTAGCACGTAGGGGAGGACCGGGCCGATCCTGGCTTGTG
456 TAGGACCAGCAGCAAGATCGACAGCACGAAGAGGAGGACCGGGCCGATCCTGGCCTGTC
* * * * *
17099698 CATTCTGCCTCTCCGATCGACTAAGCACCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATATG
1 CATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAGG
*
17099762 GAGTTCACTCCATGTCTAAGC
65 GAGTTCATTCCATGTCTAAGC
17099783 ATACAGAGTT
Statistics
Matches: 502, Mismatches: 86, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
513 6 0.01
514 323 0.64
515 173 0.34
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (514 bp):
CATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAG
AGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACAC
TCGTTTCCTGGATTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAG
GTTGCGACAGTAGGATCGACAGCACGCAGAGGGGCACCGGGCCGATCCCCGACTTACGCATTCTA
CCTCTCCAGCCAGCTAAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGCGTTACGACAG
TAGGACCAGCAGCAAGATCGACAGCACGAAGAGGAGGACCGGGCCGATCCTGGCCTGTC
Found at i:17099446 original size:159 final size:159
Alignment explanation
Indices: 17099207--17099587 Score: 427
Period size: 159 Copynumber: 2.4 Consensus size: 159
17099197 CGATTGGCTG
* * * *
17099207 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * *
17099272 AGCCAGACCGAGGGTTGTGGCAGTGGGA-CTGGCAGCACGTAGAGGGGG-A-CTGGG-CTGATCC
66 AGCCAGACCGAGGGTTGCGGCAGTAGGATC-GACAGCACGTAG-GGGGGCATC-GGGTC-GAT-C
* * *
17099333 CCAG-CTTGCGCATTATGCCTCTCCGGCCGGCTTA
126 CCAGACTTACGCATTATACCTCTCCGGCCAGC-TA
** *
17099367 A-CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * **
17099429 CAGATCAGACCGAGGGTTGCGGCTGTAGGATCGACAGTACGTAGGGGGGCATCGGGTCGATCCTT
65 CAG-CCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGCATCGGGTCGATCCCA
* * * *
17099494 GATTTACGCATTCTACCTCTTCGGTCAGCTA
129 GACTTACGCATTATACCTCTCCGGCCAGCTA
*
17099525 AGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17099588 TATGGAGTTC
Statistics
Matches: 186, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
158 17 0.09
159 161 0.87
160 8 0.04
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGCCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGCATCGGGTCGATCCCAGA
CTTACGCATTATACCTCTCCGGCCAGCTA
Found at i:17099609 original size:26 final size:26
Alignment explanation
Indices: 17099559--17099611 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17099549 GTTGGCTTAG
*
17099559 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
17099585 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17099611 G
1 G
17099612 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17100510 original size:26 final size:26
Alignment explanation
Indices: 17100480--17100529 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17100470 GTTGACTTAG
17100480 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17100506 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
17100530 TAGATCGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17100861 original size:158 final size:158
Alignment explanation
Indices: 17100506--17100997 Score: 365
Period size: 158 Copynumber: 3.1 Consensus size: 158
17100496 CCCAGTCTAA
* * * * * * *
17100506 GCATACGAAGTTCATTCCCAGTCTTAGATCGGA-TCGAATCGAGGGTTACGACAGCAGGATC-AG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAG-ACCGAGGGTTACGACAGTAGGACCGA-
* * * ** * * * * * * * *
17100569 CAGCATGCAAGGGGGACCAAGTCGATCC-CTGGCTTGCGTATTCTGCCTCTTCGGTCGGCTGAGC
64 CAGCACGCATGAGGGACCGGGCCGATCCTC-GGCTTACGCATTATGCCTCTCCGATCGGCTCAAC
* * *
17100633 GCCCGCACGCCCATTTCC-TGGGTTGGCTTAG
128 GCCCGCACACTCA-TTCCGTGGGTTGACTTAG
* * * ** * ** *
17100664 GCATA-GAGAGTTCATT-CCATGTCTTAG-CCCCAGCCAGACCGAGGGTTGTG-CAGTGGGACCG
1 GCATACG-GAGTTCATTCCCA-ATCTAAGATCGGA-CTAGACCGAGGGTTACGACAGTAGGACCG
* *
17100725 ACAGCACGCA-GAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGA-CTGGCTC
63 ACAGCACGCATGA--GGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGATC-GGCTC
* *
17100788 AATGCCCGCACGCTCATTCCGTGGGTTGACTTAG
125 AACGCCCGCACACTCATTCCGTGGGTTGACTTAG
* * * *
17100822 GCATACGGAGTTCCTTCCCAATCTAAGATCGGACTAGACCGAGGGTTACGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTACGACAGTAGGACCGACA
* ** * * *
17100887 GCACGCATGAGGGATCGGGTTGATCCTTGGCTTACGCATTTTGCCTCTCCGATCGGCTGAACGCC
66 GCACGCATGAGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAACGCC
* * * * *
17100952 CTCATACTCGTTTCGTGGGTTGGCTTAG
131 CGCACACTCATTCCGTGGGTTGACTTAG
17100980 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17100998 ATGTCTAAGC
Statistics
Matches: 262, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 26 0.10
158 207 0.79
159 26 0.10
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTACGACAGTAGGACCGACA
GCACGCATGAGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAACGCC
CGCACACTCATTCCGTGGGTTGACTTAG
Found at i:17101005 original size:158 final size:157
Alignment explanation
Indices: 17100591--17101007 Score: 412
Period size: 158 Copynumber: 2.6 Consensus size: 157
17100581 GGGACCAAGT
* * * * * * * *
17100591 CGATCCCTGGCTTGCGTATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTTCCTGGGT
1 CGATCCTTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGGGT
* ** *
17100656 TGGCTTAGGCATA-GAGAGTTCATTCCATGTCTTAGCCCCAGCCAGACCGAGGGTTGTGCAGTGG
66 TGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTACGCAGTAG
17100720 GACCGACAGCACGCAGAGGGGGACCGGGC
130 GACCGACAGCACGCAGA-GGGGACCGGGC
* * * * *
17100749 CGATCCTCGGCTTGCGCATTATGCCTTTCCGA-CTGGCTCAATGCCCGCACGCTCATTCCGTGGG
1 CGATCCTTGGCTTGCGCATTATGCCTCTCCGATC-GGCTGAACGCCCGCACGCTCATTTCGTGGG
* * * ** * * *
17100813 TTGACTTAGGCATACGGAGTTCCTTCCCA-ATCTAAG-ATCGGACTAGACCGAGGGTTACGATAG
65 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTACG-CAG
* * * *
17100876 TAGGATCGATAGCACGCATGA-GGGATCGGGT
127 TAGGACCGACAGCACGCA-GAGGGGACCGGGC
* * * * ** *
17100907 TGATCCTTGGCTTACGCATTTTGCCTCTCCGATCGGCTGAACGCCCTCATACTCGTTTCGTGGGT
1 CGATCCTTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGGGT
17100972 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17101008 ATATAGAGTT
Statistics
Matches: 206, Mismatches: 44, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 176 0.85
159 22 0.11
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
CGATCCTTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTACGCAGTAGG
ACCGACAGCACGCAGAGGGGACCGGGC
Found at i:17101010 original size:26 final size:26
Alignment explanation
Indices: 17100980--17101032 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17100970 GTTGGCTTAG
*
17100980 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17101006 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17101032 G
1 G
17101033 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17108031 original size:26 final size:26
Alignment explanation
Indices: 17108002--17108052 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17107992 GTTGACTTAG
*
17108002 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
** *
17108028 GCATACGGAGTTCATTCCCAATCTA
1 GCATACAAAGTTCATCCCCAATCTA
17108053 TGATCGAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:17108344 original size:159 final size:158
Alignment explanation
Indices: 17108161--17108530 Score: 404
Period size: 158 Copynumber: 2.3 Consensus size: 158
17108151 GAGCACCCGT
* * * * * *
17108161 ACGCCCGTTTCATGGGTT-AGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCTAG-CTGGA
1 ACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCGAA
** ** * * *
17108224 CGGAGGGTTGTGGCAGTGGGACCGACAGCAAGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGC
64 CGGAGGGTTGCAGCAGCAGGACCGACAGCAAGCAGA-GGGGACCGGGCCGATCCCCGACTTACGC
* * *
17108289 ATTATGCCTCTCCGACCGGCTCAACGCCTGC
128 ATTATACCTCTCCCACCGACTCAACGCCTGC
**
17108320 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATCAGACCGAAC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCAGACCGAAC
* * ** * * * *
17108384 TGAGGGTTGCAGTAGCAGGATTGACAGCACGCTGAGGGGACCGGGCCGATCCCTGGCTTACGCAT
65 GGAGGGTTGCAGCAGCAGGACCGACAGCAAGCAGAGGGGACCGGGCCGATCCCCGACTTACGCAT
* * *
17108449 TCTACCTCTCCCACCGACTGAGCGCCTGC
130 TATACCTCTCCCACCGACTCAACGCCTGC
* *
17108478 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17108531 ATATGGAGCT
Statistics
Matches: 175, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 97 0.55
159 73 0.42
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGAACG
GAGGGTTGCAGCAGCAGGACCGACAGCAAGCAGAGGGGACCGGGCCGATCCCCGACTTACGCATT
ATACCTCTCCCACCGACTCAACGCCTGC
Found at i:17108825 original size:171 final size:170
Alignment explanation
Indices: 17108563--17109595 Score: 460
Period size: 171 Copynumber: 5.9 Consensus size: 170
17108553 AAGATCGGAC
* * ** ** * * * *
17108563 CGGACCGCGGGTTGCGGCACCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGATTGAACC
1 CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAGCT
* ** * * *
17108628 AATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTT
66 AATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTT
*
17108693 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGG
131 GGCTTAGGCATACGAAGTTCATTCCA-GTCTAAGCCCCAGG
* *
17108734 CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCT
1 CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAGCT
* * * * ** **
17108799 GATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTTAATGGGTT
66 AATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* * * **
17108864 GACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAG
131 GGCTTAGGCATACGAAGTTCAT-TCCAGTCTAAGC-CCCAG-G
*** * * * * * * * *
17108907 TTCATTCCCA--ATCTATGATCAGATCA-AACCGAGGGTTACGGTAGCAGGATTGACAGCACGTA
1 --CGGACCGAGGGT-TGTG-GCA-AT-AGGACC-A--G---CAGT-G--GGATCGACAGCACGCA
* * * * *
17108969 G-GGGGGATCGAGTTTATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACG
51 GAGGGGGATCGAGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATG
* * * **
17109033 CCCGTTTCGTGGGTTGGCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAAT
116 CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA-GTCTAAGCCCCAGG
* * * * * * * ***
17109089 CAGACCGAGGGTTGTGGTAGTGGGATCAACAGCATGCAGGGGGGATCGATCCGATCCCTGC-CTT
1 CGGACCGAGGGTTGTGGCAATAGG----AC--CA-GCA-GTGGGATCGA--C-AGCAC-GCAGAG
* * * * * *** * * ** ***
17109153 GCGCATTCTG-CCT-CTCCGGCCGGCTGAGCGCCCGCACG-CTCGTTTCGTG--GGTTG-GCTTA
54 GGGGA-TC-GAGCTAATCC--CCGGCT-TGCG-CATTATGCCTC--TCCG-GCCGACTGAGCGCC
* * * * * **** * * * * **
17109212 GGCATAC-GGAGTTCATTCCAT-GCCTAAGCATACGGAGCTCATTCCCAGTCTAAG-ATC-GG
110 CGCATGCTCG-TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGCCCCAGG
* * ** ** * * *
17109271 ACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGATTGAA
1 --CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAG
* * ** * * *
17109336 CCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGG
64 CTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGG
*
17109401 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGG
129 TTGGCTTAGGCATACGAAGTTCATTCCA-GTCTAAGCCCCAGG
* *
17109444 CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCT
1 CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAGCT
* * * * **
17109509 GATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTT-GATGGGT
66 AATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCG-TGGGT
*
17109573 TGACTTAGGCATACGAAGTTCAT
130 TGGCTTAGGCATACGAAGTTCAT
17109596 CCCCAATCTA
Statistics
Matches: 606, Mismatches: 196, Indels: 120
0.66 0.21 0.13
Matches are distributed among these distances:
167 1 0.00
168 1 0.00
169 6 0.01
170 21 0.03
171 289 0.48
172 11 0.02
173 13 0.02
174 4 0.01
175 6 0.01
176 13 0.02
177 5 0.01
178 8 0.01
179 2 0.00
180 11 0.02
181 7 0.01
182 11 0.02
183 13 0.02
184 140 0.23
185 36 0.06
186 4 0.01
187 3 0.00
188 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (170 bp):
CGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAGCT
AATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTT
GGCTTAGGCATACGAAGTTCATTCCAGTCTAAGCCCCAGG
Found at i:17108900 original size:26 final size:26
Alignment explanation
Indices: 17108871--17108921 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17108861 GTTGACTTAG
17108871 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
17108897 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
17108922 TGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17108975 original size:355 final size:356
Alignment explanation
Indices: 17108593--17109815 Score: 1472
Period size: 355 Copynumber: 3.4 Consensus size: 356
17108583 CAGGACCAGC
* *
17108593 AGCAGGATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTA
1 AGCAGGATCGACAGCACGCAGGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCCA
* ** * ** * * *
17108658 GTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATACGAAGTTCATTCCACGTC
* *
17108723 TAAGCCCCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
131 TAAGCCCCAAGCAGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
17108788 GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
196 GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
17108853 TTTAATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAA
261 TTTAATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAA
17108918 TCTATGATCAGATCAAACCGAGGGTTACGGT
326 TCTATGATCAGATCAAACCGAGGGTTACGGT
* * **** *
17108949 AGCAGGATTGACAGCACGTA-GGGGGGATCGAGTTTATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCCA
*
17109013 GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATATGAAGTTCATTCCACGTC
66 GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATACGAAGTTCATTCCACGTC
* * *
17109078 TAAGCCCCAATCAGACCGAGGGTTGTGG---T---------AGTGGGATCAACAGCATGCAG-GG
131 TAAGCCCCAAGCAGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
* ** * * * * * ** * ** *
17109130 GGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
196 GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
** * * * * *
17109195 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCC-ATGCCTAAGCATACGGAGCTCATTCCC
261 TTTAATGGGTTGACTTAGGCATACGAAGTTCATCCCCAAT--CTAAGCATACAGAGTTCATTCCC
* * * * ** * *
17109258 AGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGC
324 AATCTATGATCAGATCAAACCGAGGGTT-----A-C--G----GT
* *
17109303 AGCAGGATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTA
1 AGCAGGATCGACAGCACGCAGGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCCA
* ** * ** * * *
17109368 GTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATACGAAGTTCATTCCACGTC
* *
17109433 TAAGCCCCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
131 TAAGCCCCAAGCAGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
17109498 GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
196 GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
* *
17109563 TTTGATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACATACAGAGTTCATTCCCAA
261 TTTAATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAA
*
17109628 TCTATGATCAGATCAAACTGAGGGTTACGGT
326 TCTATGATCAGATCAAACCGAGGGTTACGGT
* * * **** * *
17109659 AGCAGGATTGACAGCACGTA-GGGGAGATCGAGTTTATCCCCAGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCCA
* *
17109723 GCCAACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAAGCATATGAAGTTCATTCCACGTC
66 GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATACGAAGTTCATTCCACGTC
*
17109788 TAAGCCCCAATCAGACCGAGGGTTGTGG
131 TAAGCCCCAAGCAGACCGAGGGTTGTGG
17109816 TAGTGGGATC
Statistics
Matches: 704, Mismatches: 133, Indels: 61
0.78 0.15 0.07
Matches are distributed among these distances:
340 2 0.00
341 2 0.00
342 124 0.18
343 19 0.03
347 1 0.00
348 1 0.00
350 1 0.00
352 1 0.00
354 19 0.03
355 348 0.49
356 37 0.05
358 1 0.00
360 1 0.00
362 1 0.00
363 1 0.00
367 19 0.03
368 122 0.17
369 2 0.00
370 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (356 bp):
AGCAGGATCGACAGCACGCAGGGGGGGATCGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCCA
GCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATACGAAGTTCATTCCACGTC
TAAGCCCCAAGCAGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGG
GGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCG
TTTAATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAA
TCTATGATCAGATCAAACCGAGGGTTACGGT
Found at i:17109633 original size:710 final size:710
Alignment explanation
Indices: 17108274--17109977 Score: 2928
Period size: 710 Copynumber: 2.4 Consensus size: 710
17108264 GACTGGGTCG
* * * ** * * * *
17108274 ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCTGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* * * * ** * * ** **
17108339 ACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAGA-CCGAACTGAGGGTTGCAGTAGCA
66 GCTTAAGCATATGAAGTTCATTC-CACGTCTAAGCCCCA-ATCAG-ACCGAGGGTTGTGGTAGTG
** * * * * ** * * * ** *
17108401 GGATTGACAGCACGCTGAGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCCACCGA
128 GGATCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGG
*
17108466 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
193 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
*
17108531 ATATGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGC
258 ATACGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGC
17108596 AGGATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTC
323 AGGATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTC
17108661 GGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
388 GGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17108726 GCCCCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGG
453 GCCCCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGG
17108791 ACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTT
518 ACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTT
*
17108856 AATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCT
583 AATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACATACAGAGTTCATTCCCAATCT
*
17108921 ATGATCAGATCAAACCGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGGGATCGAGTTT
648 ATGATCAGATCAAACCGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGAGATCGAGTTT
17108984 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
17109049 GCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGTGGGA
66 GCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGTGGGA
17109114 TCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTG
131 TCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTG
17109179 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATA
196 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATA
17109244 CGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGCAGG
261 CGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGCAGG
17109309 ATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGC
326 ATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGC
17109374 TGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
391 TGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
17109439 CCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGACC
456 CCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGACC
*
17109504 GGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTTGAT
521 GGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTTAAT
17109569 GGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACATACAGAGTTCATTCCCAATCTATG
586 GGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACATACAGAGTTCATTCCCAATCTATG
*
17109634 ATCAGATCAAACTGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGAGATCGAGTTT
651 ATCAGATCAAACCGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGAGATCGAGTTT
* *
17109694 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCACACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
17109759 GCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGTGGGA
66 GCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGTGGGA
17109824 TCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTG
131 TCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * *
17109889 AGCGCCCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
196 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATA
* *
17109954 CGGAGTTCATTCCCAATCTAAGAT
261 CGGAGCTCATTCCCAGTCTAAGAT
17109978 TTTGAGCCAC
Statistics
Matches: 943, Mismatches: 48, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
709 2 0.00
710 937 0.99
711 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (710 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
GCTTAAGCATATGAAGTTCATTCCACGTCTAAGCCCCAATCAGACCGAGGGTTGTGGTAGTGGGA
TCAACAGCATGCAGGGGGGATCGATCCGATCCCTGCCTTGCGCATTCTGCCTCTCCGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATA
CGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTGCGGCACCAGGACCAGCAGCAGG
ATCGACAGCACGCAGGGGGGGATTGAACCAATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGC
TGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGGCGGACCGAGGGTTGTGGCAATAGGACCAGCAGTGGGATCGACAGCACGCAGAGGGGGACC
GGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGATTGAGCTCCCATATGCTCGTTTAAT
GGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACATACAGAGTTCATTCCCAATCTATG
ATCAGATCAAACCGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGAGATCGAGTTT
Found at i:17109973 original size:26 final size:26
Alignment explanation
Indices: 17109923--17109975 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17109913 GTTGGCTTAG
*
17109923 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17109949 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17109975 G
1 G
17109976 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17111297 original size:184 final size:184
Alignment explanation
Indices: 17110983--17111352 Score: 470
Period size: 184 Copynumber: 2.0 Consensus size: 184
17110973 TGGGTTGACT
* * * * * *
17110983 TAGGCATGCAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCG
1 TAGGCATACAGAGTTCATTCCCAATCTAAAATCGAACCAGACCGAGGGTTACGACAGCAAGATCG
* * * * * * *
17111048 AGAGCACGTAGGGGGGATCGGGTCGATCCCCAACTTGCGCATTCTGCCTCTTCAACCGACTGAGC
66 ACAACACGCAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTCCCTCTCCAACCGACTGAGC
* *
17111113 ACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCACGTC
131 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCACGTC
* ** *
17111167 TAGGCATATAGAGTTCATTCCCAATCTAAAATCGAACCAGACCGAGGGTTACGGTAGCAGGATCG
1 TAGGCATACAGAGTTCATTCCCAATCTAAAATCGAACCAGACCGAGGGTTACGACAGCAAGATCG
* ** ** *
17111232 ACAACATGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGTCCGGCTGAGC
66 ACAACACGCAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTCCCTCTCCAACCGACTGAGC
* *** *
17111297 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
131 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCACGTC
17111351 TA
1 TA
17111353 AGCCCCAGTT
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 156 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
TAGGCATACAGAGTTCATTCCCAATCTAAAATCGAACCAGACCGAGGGTTACGACAGCAAGATCG
ACAACACGCAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTCCCTCTCCAACCGACTGAGC
ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCACGTC
Found at i:17111533 original size:501 final size:502
Alignment explanation
Indices: 17110623--17111884 Score: 1408
Period size: 501 Copynumber: 2.5 Consensus size: 502
17110613 CCTGCATGCC
* * * * *
17110623 CGTTTCATGGGTTAACTTAGGCATATGGAGTTCA-TCCCCAGTCTAAGCATACAAAGTTCATTCC
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAC-GTCTAGGCATACAGAGTTCATTCC
* * * *
17110687 CAGTCTAAGATCGAACCGGACCGAGGGTTACGGTAACAGGATCGACAGCACGCAGGAGGGATCCG
65 CAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCAG
** * * * * * *
17110752 GTTGATCCCC-ATCTTACGCATTCTGCCTCTTCGACTGGCTGAGCACCCTCACGCCCATTTCGTG
130 GCCGATCCCCGA-CTTACGCATTCTACCTCTCCGTCCGGCTGAGCACCCGCACGCCCGTTTCGTG
* * *
17110816 GGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAA-CCTCCCGTTGGACCAAGGGTTGTGGTA
194 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CCAGTTGGACCAAGGGTTGTGGCA
* * * * * * *
17110880 GCGGGACTGGCAGCACACAGAGGGGGACCAGGCCGATCCTCAGCTTGCACATTGTGCCTCTTCGG
258 GCGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCAGCTTACACATTATGCCTCTCCGA
* * ** * * * * *
17110945 TCGGCTCAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCT
323 CCGACTCAACACCCGCACGCTCGTTCCATAGGTTGAATTAGGCATACAGAGTTCATTCCCAATCT
** * * * *
17111010 AAGATTGGACCAGACCGAGGGTTGCGACAGCAAGATCGAGAGCACGTA-GGGGGGATCGGGTCGA
388 AAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGCAGGGGGGGATCGGGCCGA
* ** * *
17111074 TCCCCAACTTGCGCATTCTGCCTCT-TCAACCGACTGAGCACCCGTACGCT
453 TCCCCAACTTGCACATTCCACCTCTCT-AACCGACTGAACACCCGCACGCT
* ** *
17111124 CGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCACGTCTAGGCATATAGAGTTCATTCCC
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAGGCATACAGAGTTCATTCCC
* * * *
17111189 AATCTAAAATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGACAACATGCAGGGGGGATCAGG
66 AGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCAGG
* * *
17111254 CCGATCCCCGGCTTGCGCATTCTCCCTCTCCGTCCGGCTGAGCACCCGCACGCCCGTTTCGTGGG
131 CCGATCCCCGACTTACGCATTCTACCTCTCCGTCCGGCTGAGCACCCGCACGCCCGTTTCGTGGG
*
17111319 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGTG
196 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCG
* * * * *
17111384 GGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGGTTTATACATTATGCCTCTCCGACCG
261 GGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCG
* * * * * *
17111449 ACTGACCACTCGCACGCTCGTTCCGTAGGTTGAATTAGGCATACGGAGTTTATTCCCAATCTAAG
326 ACTCAACACCCGCACGCTCGTTCCATAGGTTGAATTAGGCATACAGAGTTCATTCCCAATCTAAG
* * * ** *
17111514 ATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAACACGCAGGGGGGGATCGGGCCGATCC
391 ATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGCAGGGGGGGATCGGGCCGATCC
* **** * **
17111579 CCAGCTTGCACATTCCACCTCTCTGGTTGGCTGAATGCCCGCACGCT
456 CCAACTTGCACATTCCACCTCTCTAACCGACTGAACACCCGCACGCT
* * * * *
17111626 CGTTTCGA-GGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCTAAGG-ATACGGGGTTCATTC
1 CGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCACGTCT-AGGCATACAGAGTTCATTC
* * * * * * *
17111689 CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAAGATCGACAGCACACAGGGGGGACCG
64 CCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCA
* * ** * *
17111754 GGCC-ACTCCCCGACTTACGCATTCTACCTCTTCGGT-CTGCTGAGTGCCCGTACGCTCGTTTCG
129 GGCCGA-TCCCCGACTTACGCATTCTACCTC-TCCGTCCGGCTGAGCACCCGCACGCCCGTTTCG
* * **** *
17111817 TGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGC
192 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGC
17111882 AGC
257 AGC
17111885 AGGATCGATA
Statistics
Matches: 633, Mismatches: 119, Indels: 17
0.82 0.15 0.02
Matches are distributed among these distances:
501 358 0.57
502 266 0.42
503 9 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (502 bp):
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCAGG
CCGATCCCCGACTTACGCATTCTACCTCTCCGTCCGGCTGAGCACCCGCACGCCCGTTTCGTGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCG
GGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCG
ACTCAACACCCGCACGCTCGTTCCATAGGTTGAATTAGGCATACAGAGTTCATTCCCAATCTAAG
ATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGCAGGGGGGGATCGGGCCGATCC
CCAACTTGCACATTCCACCTCTCTAACCGACTGAACACCCGCACGCT
Found at i:17111600 original size:159 final size:158
Alignment explanation
Indices: 17111167--17111663 Score: 446
Period size: 159 Copynumber: 3.1 Consensus size: 158
17111157 ATTCCACGTC
** * * * *
17111167 TAGGCATATAGAGTTCATTCCCAATCTAAAATC-GAACCAGACCGAGGGTTACGGTAGCAGGATC
1 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAG-ATCGGACCGAGGGTTGCGGTAGCAGGATC
* * *
17111231 GACAACATGCA-GGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTCCCTCTCCGTCCGGCTGA
65 GACAACACGCAGGGGGGGATCAGGCCGATCCCCGGCTTGCACATTC-CCCTCTCCGACCGGCTGA
* * * *
17111295 GCACCCGCACGCCCGTTTCGTGGGTTGGCT
129 ACACCCGCACGCTCGTTTCGTAGGTTGACT
* * ** * * * * ** *
17111325 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCAAGGGTTGTGGCAGTGGGAC
1 TAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGAT
* * * * * ** ** *
17111388 CGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGGTTTATACATTATGCCTCTCCGACCGACTG
64 CGACAACACGCAGGGGGGGATCAGGCCGATCCCCGGCTTGCACATT-CCCCTCTCCGACCGGCTG
* * * *
17111453 ACCACTCGCACGCTCGTTCCGTAGGTTGAAT
128 AACACCCGCACGCTCGTTTCGTAGGTTGACT
* *
17111484 TAGGCATACGGAGTTTATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * ***
17111549 ACAACACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCCACCTCTCTGGTTGGCTGAA
66 ACAACACGCAGGGGGGGATCAGGCCGATCCCCGGCTTGCACATTCC-CCTCTCCGACCGGCTGAA
** *
17111614 TGCCCGCACGCTCGTTTCG-AGGGTTGTCT
130 CACCCGCACGCTCGTTTCGTA-GGTTGACT
*
17111643 TAGGCATACGGAGTTTATTCC
1 TAGGCATACGGAGTTCATTCC
17111664 ATGTCTAAGG
Statistics
Matches: 258, Mismatches: 72, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 53 0.21
159 198 0.77
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCG
ACAACACGCAGGGGGGGATCAGGCCGATCCCCGGCTTGCACATTCCCCTCTCCGACCGGCTGAAC
ACCCGCACGCTCGTTTCGTAGGTTGACT
Found at i:17111678 original size:26 final size:28
Alignment explanation
Indices: 17111638--17111698 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 28
17111628 TTTCGAGGGT
* *
17111638 TGTCTTAGGCATACGGAGTTTATT-CCA
1 TGTCTAAGGCATACGGAGTTCATTCCCA
*
17111665 TGTCTAAGG-ATACGGGGTTCATTCCCA
1 TGTCTAAGGCATACGGAGTTCATTCCCA
17111692 -GTCTAAG
1 TGTCTAAG
17111699 ATCGGATCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (28 bp):
TGTCTAAGGCATACGGAGTTCATTCCCA
Found at i:17111854 original size:184 final size:185
Alignment explanation
Indices: 17111489--17111856 Score: 494
Period size: 184 Copynumber: 2.0 Consensus size: 185
17111479 TGAATTAGGC
* * * *
17111489 ATACGGAGTTTATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAAC
1 ATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAAGATCGACAAC
* * *
17111554 ACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCCACCTCTCTGGTTGGCTGAATGCCC
66 ACACAGGGGGGGACCGGGCCGATCCCCAGCTTACACATTCCACCTCTCTGGTTGGCTGAATGCCC
* * *
17111619 GCACGCTCGTTTCGAGGGTTGTCTTAGGCATACGGAGTTTATTCCATGTCTAAGG
131 GCACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGG
* * * *
17111674 ATACGGGGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAAGATCGACAGC
1 ATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAAGATCGACAAC
* * *
17111739 ACACA-GGGGGGACCGGGCC-ACTCCCC-GACTTACGCATTCTACCTCT-TCGGTCT-GCTGAGT
66 ACACAGGGGGGGACCGGGCCGA-TCCCCAG-CTTACACATTCCACCTCTCT-GGT-TGGCTGAAT
* *
17111799 GCCCGTACGCTCGTTTCGTGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
127 GCCCGCACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17111857 CCCCAACCAG
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
183 3 0.02
184 95 0.59
185 62 0.39
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
ATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAAGATCGACAAC
ACACAGGGGGGGACCGGGCCGATCCCCAGCTTACACATTCCACCTCTCTGGTTGGCTGAATGCCC
GCACGCTCGTTTCGAGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGG
Found at i:17112052 original size:26 final size:26
Alignment explanation
Indices: 17112015--17112064 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17112005 GTTGACTTAG
*
17112015 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17112041 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
17112065 GAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17112961 original size:26 final size:26
Alignment explanation
Indices: 17112923--17112975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17112913 GTTGACTTAG
17112923 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17112949 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17112975 G
1 G
17112976 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17113434 original size:26 final size:26
Alignment explanation
Indices: 17113404--17113454 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17113394 TTGGCTTAGG
17113404 CATACGAAGTTCA-TTCCATGTCTAAA
1 CATACGAAGTTCATTTCCA-GTCTAAA
*
17113430 CATACGGAGTTCATTTCCAGTCTAA
1 CATACGAAGTTCATTTCCAGTCTAA
17113455 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTTCCAGTCTAAA
Found at i:17113627 original size:25 final size:25
Alignment explanation
Indices: 17113599--17113646 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
17113589 GTTGACTTAG
*
17113599 GCATACAGAGTTTATCCCCAGTCAA
1 GCATACAGAGTTCATCCCCAGTCAA
* *
17113624 GCATACGGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATCCCCAGTC
17113647 TAAGATCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAGTCAA
Found at i:17114111 original size:158 final size:159
Alignment explanation
Indices: 17113624--17114116 Score: 466
Period size: 158 Copynumber: 3.1 Consensus size: 159
17113614 CCCCAGTCAA
* * *
17113624 GCATACGGAGTTCATTCCCAG-TCTAAGATCAGA-TCGAACCGAGGATTGC-AGCAGCAAGATCG
1 GCATACGGAGTTCATTCCCAGTTCTAAGATCAGACT-GGACCGAGGGTTGCGA-CAGCAGGATCG
* * *
17113686 GCAGCACGTAGGGGGGATCGGGCCGAT-CCTCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAG
64 ACAGCACGTAGGGGGGACCGGGCCGATCCCT-GGCTTACGTATTCTGCCTCTCCGGTCGGCTGAG
* *
17113750 CACCCGCACGCTCGTTTCGTGGGTTGGCTAAG
128 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * ** * * * * *
17113782 CCATAGGGAGTTCATT-CCA-TGTCTAAGCCCCCG-CCAGACCGAGGGCTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCAGT-TCTAAG-ATCAGACTGGACCGAGGGTTGCGACAGCAGGATCG
* * * * * ** *
17113844 ACAGTACGTAAGAGGGGACCGGGCCAATCCCTGGCTTACTTATTATGCCTCTTTGGTCGGCTCAG
64 ACAGCACGT-AGGGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGTCGGCTGAG
** * *
17113909 TGCCCGCACGCTCGTTTCAT-GGTCTGACTTAT
128 CACCCGCACGCTCGTTTCATGGGT-TGGCTTAG
* * * * *
17113941 ACATATGAAGTTCATTCCCAGTTC-AAGATCAGACTGGACCTAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
17114005 AGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCAG-CTGGCTGAGCA
66 AGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGTC-GGCTGAGCA
*
17114069 CCAGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
17114099 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
17114117 ATGTCTAAGC
Statistics
Matches: 255, Mismatches: 67, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 129 0.51
159 113 0.44
160 8 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGAC
AGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGGTCGGCTGAGCAC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17114129 original size:26 final size:26
Alignment explanation
Indices: 17114099--17114151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17114089 GTTGGCTTAG
17114099 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
17114125 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17114151 G
1 G
17114152 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17115340 original size:26 final size:26
Alignment explanation
Indices: 17115310--17115362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17115300 GTTGGCTTAG
17115310 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17115336 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17115362 G
1 G
17115363 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17116012 original size:158 final size:158
Alignment explanation
Indices: 17115745--17116213 Score: 463
Period size: 158 Copynumber: 3.0 Consensus size: 158
17115735 GGATTTGGAC
* * * *
17115745 CGAGGGTTGCGACAGCAGGATCGACAGCACGCATGGGGGACTGAGCCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGAC-GGGCCGATCCCCGGCTTGCGCAT
* * * * * * * * *
17115810 TCTGCCTCTCCGACCGGCTGAGCACCTGCATGCCCATTTCGTGGGTTGGCTTGGGCATAGGGAGT
65 TCTGCCTCTCCGGCTGGCTGAGCTCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGT
* *
17115875 TCATTCCATGTCTAAGCCGT-AG-CTGAA-
130 TCATTCCATGTCTAAG-CATCAGACCGAAT
* * *
17115902 CTGAGGGTTGTGGCAGC-GGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTGCGC
1 C-GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGC
* * * * * * **
17115966 ATTATGCCTTTTCGGCTAGCTCAGCTCCTGCACGCTCGTTTTGTGGGTTGACTTATACATACGGA
63 ATTCTGCCTCTCCGGCTGGCTGAGCTCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGA
*
17116031 GTTCATTAC-TAGTCTAAG-ATCAGACCGAAT
128 GTTCATTCCAT-GTCTAAGCATCAGACCGAAT
* * *
17116061 CGAGGGTTGTGGCAGCAGGATCAACAGCACGCAGGGAGGACCGGGCCAATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCAT
* ** *
17116126 TCTGCCTCTCCAG-TCGGCTGAG-TGCC-GCACATTCGTTTCT-TGGGTTGGCATAGGCATACGG
65 TCTGCCTCTCCGGCT-GGCTGAGCT-CCTGCACGCTCGTTT-TGTGGGTTGGCTTAGGCATACGG
17116187 AGTTCATTCCATGTCTAAGCATACAGA
127 AGTTCATTCCATGTCTAAGCAT-CAGA
17116214 GTTCATTCCC
Statistics
Matches: 251, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 64 0.25
158 165 0.66
159 21 0.08
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATT
CTGCCTCTCCGGCTGGCTGAGCTCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATCAGACCGAAT
Found at i:17116215 original size:26 final size:26
Alignment explanation
Indices: 17116179--17116231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17116169 GTTGGCATAG
*
17116179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17116205 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17116231 G
1 G
17116232 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17116936 original size:26 final size:26
Alignment explanation
Indices: 17116898--17116950 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17116888 GTTGACTTAG
17116898 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
* *
17116924 GCATACGACGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17116950 G
1 G
17116951 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17117284 original size:159 final size:158
Alignment explanation
Indices: 17116924--17117425 Score: 361
Period size: 158 Copynumber: 3.2 Consensus size: 158
17116914 CCTAGTCTAA
* * * * * *
17116924 GCATAC-GACGTTCATTCCCA-GTCTAAGATTGGATCGGATCGAGGGTTGTGACAGCAGGATCGG
1 GCATACAGA-GTTCATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGACCGA
* ** * ** * * * ** * * *
17116987 CAACACACAG-GAGGGATTGGGTCGATCCCTGGCTTGTACATTCTGCCTCTCCGGTCGGCTGACC
64 CAGCACACAGAG-GGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTCAAC
* * * * * *
17117051 GCCCGCATGCCCATTTCGTGGGTTGGCTTAG
128 GCTCGCACGCTCGTTTCATGGGTTGACTTAG
** * ** * * * * *
17117082 GCATAGGGAGCTT-ATTCCATGTCTAAG-CCCCAGCCAAATCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACAGAG-TTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGTGACAGCAGGACCGA
* * * * *
17117145 TAGCACACAGAAGGGGATCAGGCCGATCCCC-GACTTTCACATTATGCCTTTTCGATCGGCTCAA
64 CAGCACACAG-AGGGGATCAGGCCGATCCCCAG-CTTGCACATTATGCCTCTTCGACCGACTCAA
* *
17117209 CGCTCGTACGCTCGTTTCATGGGTTGACTTAT
127 CGCTCGCACGCTCGTTTCATGGGTTGACTTAG
* *
17117241 GCATACAGAGTTCATT-CATAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGACCGAC
* * * * * * * * * * *
17117305 AGCACGCAGAGGGGATCGGGTCGATCCTCAGCTTGCGCATTCTTCCTCTTCGGCCGATTGAGCGC
65 AGCACACAGAGGGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTCAACGC
*
17117370 TCGCACGCTCGTTTCATGGGTTGGCTTAG
130 TCGCACGCTCGTTTCATGGGTTGACTTAG
*
17117399 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
17117426 CATATGGAGT
Statistics
Matches: 267, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 142 0.53
159 118 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGACCGACA
GCACACAGAGGGGATCAGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTCAACGCT
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:17117450 original size:26 final size:26
Alignment explanation
Indices: 17117399--17117451 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17117389 GTTGGCTTAG
* *
17117399 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTCCATTCCATGACTAA
*
17117425 GCATATGGAGTCCATTCCCA-GACTAA
1 GCATACGGAGTCCATT-CCATGACTAA
17117451 G
1 G
17117452 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCATGACTAA
Found at i:17117887 original size:20 final size:20
Alignment explanation
Indices: 17117862--17117899 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
17117852 ACTAAGGGTT
17117862 GCACACAAGGGGGATCGGTA
1 GCACACAAGGGGGATCGGTA
17117882 GCACACAAGGGGGATCGG
1 GCACACAAGGGGGATCGG
17117900 GCCAATCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.42, T:0.08
Consensus pattern (20 bp):
GCACACAAGGGGGATCGGTA
Found at i:17118316 original size:159 final size:159
Alignment explanation
Indices: 17117945--17118316 Score: 411
Period size: 159 Copynumber: 2.4 Consensus size: 159
17117935 CGACTGAGCA
* * * *
17117945 CCCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGAGAG-T--TTCCATGTCTAAGCCCTAGCT
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCTAGCC
* * * *
17118007 GGATAGAGGGTTGTGGCAGCAGGACCGGTTGCACACAGAGGGGGATCAGGCCGATCCCTAGCTAG
66 GGATAGAGGGTTGCGGCAGCAGGACCGATAGCACACAGAGGGGGATCAGGCCGATCCCCAGCTAG
* *
17118072 CGTATTATGCCTCTCCGATTGGCTCAGTG
131 CGTATTATGCCTCTCCGACTAGCTCAGTG
* * * *
17118101 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GCCTAAGATC-AGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATT-CCATGTCTAAGACCTAG-
* * *
17118164 CCGGACT-GAGGGTTGCGGCAGCAGGATCGATAGCACGTAC-GA-GGGGATC-GAGCTGGTCCCC
64 CCGGA-TAGAGGGTTGCGGCAGCAGGACCGATAGCAC--ACAGAGGGGGATCAG-GCCGATCCCC
* * * *
17118225 GGCTTGCGTATTCTGCCTCTCCGACTAGCTGAGTG
125 AGCTAGCGTATTATGCCTCTCCGACTAGCTCAGTG
* * *
17118260 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAG
17118317 CATATGGAGT
Statistics
Matches: 179, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
156 36 0.20
157 1 0.01
158 6 0.03
159 128 0.72
160 6 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCTAGCC
GGATAGAGGGTTGCGGCAGCAGGACCGATAGCACACAGAGGGGGATCAGGCCGATCCCCAGCTAG
CGTATTATGCCTCTCCGACTAGCTCAGTG
Found at i:17118597 original size:891 final size:884
Alignment explanation
Indices: 17116861--17119036 Score: 2652
Period size: 891 Copynumber: 2.4 Consensus size: 884
17116851 CTCTGGTCGG
* * * * *
17116861 CTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACAAAGTTCATCCCTAGTCTAAGC
1 CTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
* ** * *
17116926 ATAC-GACGTTCATTCCCAGTCTAAGATTGGA-TCGGA-TCGAGGGTTGTGACAGCAGGATCGGC
66 GTACGGA-GTTCATTCCCAGTCTAAGATCAGACT-GGACT-GAGGGTTG-CACAGCAGGATCGGT
* * * * * * * * * *
17116988 AACACACAGGAGGGATTGGGTCGATCCCTGGCTTGTACATTCTGCCTCTCCGGTCGGCTGACCGC
127 AGCACACAGG-GGGATCGGGCCGATCCTTGGCTTATGCATTCTGCCTCTCCGATCGACTGAGCAC
* * *
17117053 CCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTTATTCCATGTCTAAGCCCCAGCCA
191 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAG--T-TTCCATGTCTAAGCCCCAGCCA
* * * *
17117118 AATCGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAAGGGGATCAGGCCGATCCC-CGACTTT
252 GATCGAGGGTTGTGGCAGCAGGACCGGTAGCACACAG-AGGGGATCAGGCCGATCCCTAG-CTTG
* * * * * * *
17117182 CACATTATGCCTTTTCGATCGGCTCAACGCTCGTACGCTCGTTTCATGGGTTGACTTATGCATAC
315 CACATTATGCCTCTCCGATTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * * *
17117247 AGAGTTCATTCATAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGTAGGATCGACAGCACGC
380 GGAGTTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
* * * * * * *
17117312 AGAGGGGATCGGGTCGATCCTCAGCTTGCGCATTCTTCCTCTTCGGCCGATTGAGCGCTCGCACG
445 AGAGGGGATCGGCTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACAGACTGAGCGCTCGCACG
**
17117377 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTCCATTC
510 CTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGAGTCCATTC
* * * ** *
17117442 CCAGACTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGTAGGATCGGCAGCACA
575 CCAGACTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAACATCGGCAGAACA
* * * ** * * * *
17117507 CAAGGGGGGACCGGGCTAATCCCGGCTTGTGCATTCTATCGCTAAGGCTGATTGAGGTCGGCTGA
640 CAAGAGGGGACCAGGCTAATCCCGCCTTACGCATTCTACCGCTAAGGCTAACTGAGGCCGGCTGA
*
17117572 GCACCCGCACGCTAGTTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA
705 GCACCCGCACGCTAGTTTCATGGGTTTGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCCCCA
* * * * *
17117637 GCCGGATCGAAGGTTGTGGTAGCAAGACTGGCAGCGAGATCGACAGCACGTAGAGGGGGATCGGG
770 GCCGGACCGAAGGTTGTGGCAGCAAGACCGGCAGCGAGATCGACAGCACGTAGAGAGGGATCAGG
*
17117702 CTGATCCCCGACTTGCATATTATGCCTCTCTGGCTGGCCTCTTCGGCCAA
835 CTGATCCCCGACTTGCATATTATGCCTCTCTGGCCGGCCTCTTCGGCCAA
* *
17117752 CTGAGCACCTGTACGCTCGTTTTGTGGGTTGACTTAGGCAAACAGAGTTCATCCCTAGTCTAAGC
1 CTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
*
17117817 GTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCACA-CAAGGGGGATCGGT
66 GTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCACAGC-A---GGATCGGT
* *
17117881 AGCACACAAGGGGGATCGGGCCAATCCTTGGCTTATGCATTCTGCCTCTCTGATCGACTGAGCAC
127 AGCACAC-AGGGGGATCGGGCCGATCCTTGGCTTATGCATTCTGCCTCTCCGATCGACTGAGCAC
* * **
17117946 CCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGAGAGTTTCCATGTCTAAGCCCTAGCTGGAT
191 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG-GAGTTTCCATGTCTAAGCCCCAGCCAGAT
* * * **
17118011 AGAGGGTTGTGGCAGCAGGACCGGTTGCACACAGAGGGGGATCAGGCCGATCCCTAGCTAGCGTA
255 CGAGGGTTGTGGCAGCAGGACCGGTAGCACACAGA-GGGGATCAGGCCGATCCCTAGCTTGCACA
* *
17118076 TTATGCCTCTCCGATTGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAG
319 TTATGCCTCTCCGATTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * * *
17118141 TTCATTCCCAGCCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGTACGA
384 TTCATTCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA-GA
* * * *
17118206 GGGGATCGAGCT-GGTCCCCGGCTTGCGTATTCTGCCTCTCCGACTAG-CTGAGTGC-CTGCACG
448 GGGGATCG-GCTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC-AGACTGAGCGCTC-GCACG
*
17118268 CTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
510 CTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGAGTCCATTC
* *
17118333 CCAGACTAAGAAT-GGATCGGACCGAGGGTTGCAGCAGCAGGACTAGTAGCAACATCGGCAGAAC
575 CCAGACTAAG-ATCGGATCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAACATCGGCAGAAC
* * * * * * **
17118397 GC-AGAGGGGATCAGGTTGATCCTTGCCTTACGCATTTTACCGCTCTGG-TCAACTGAGGCCGGC
639 ACAAGAGGGGACCAGGCTAATCC-CGCCTTACGCATTCTACCGCTAAGGCT-AACTGAGGCCGGC
* *
17118460 TGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCC
702 TGAGCACCCGCACGCTAGTTTCATGGGTTTGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCC
** *
17118525 TTAGCCGGACCGAAGGTTGTGGCAGCAAGACCGGTAGCGAGATCGACAGCACGTAGAGAGGGATC
767 CCAGCCGGACCGAAGGTTGTGGCAGCAAGACCGGCAGCGAGATCGACAGCACGTAGAGAGGGATC
* * **
17118590 AGGCTGATCCCTGACTTGCATATTATGCCTCTCTGGCCGGCCTCTTCGGTCGG
832 AGGCTGATCCCCGACTTGCATATTATGCCTCTCTGGCCGGCCTCTTCGGCCAA
* * * * *
17118643 CTGAGCGCCCGTACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
* * ** *
17118708 GTACGGAGTTCATTCCCTGTCTAAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGGTAG
66 GTACGGAGTTCATTCCCAGTCT-AAGATCAGACTGGACTGAGGGTTGC-ACAGCAGGATCGGTAG
* * * * ** *
17118773 CACATAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCCACCTCTCCGACCGACTGAGCACCCG
129 CACACAGGGGGATCGGGCCGATCCTTGGCTTATGCATTCTGCCTCTCCGATCGACTGAGCACCCG
17118838 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTTCCATGTCTAAGCCCCAGCCAGATCGAG
194 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTTCCATGTCTAAGCCCCAGCCAGATCGAG
* * * * * * * *
17118903 GGTTGCGACAGCAGGATCGATAGCACGTAC-GAGGAGATC-GAGTCGAT-CCTCGGCTTGTACAT
259 GGTTGTGGCAGCAGGACCGGTAGCAC--ACAGAGGGGATCAG-GCCGATCCCT-AGCTTGCACAT
* * * * *
17118965 TCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
320 TATGCCTCTCCGATTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
17119030 TCATTCC
385 TCATTCC
17119037 ATGTCTAAGC
Statistics
Matches: 1097, Mismatches: 163, Indels: 53
0.84 0.12 0.04
Matches are distributed among these distances:
887 4 0.00
888 132 0.12
889 87 0.08
890 217 0.20
891 530 0.48
892 33 0.03
893 91 0.08
894 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (884 bp):
CTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
GTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCACAGCAGGATCGGTAGCA
CACAGGGGGATCGGGCCGATCCTTGGCTTATGCATTCTGCCTCTCCGATCGACTGAGCACCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTTCCATGTCTAAGCCCCAGCCAGATCGAGGG
TTGTGGCAGCAGGACCGGTAGCACACAGAGGGGATCAGGCCGATCCCTAGCTTGCACATTATGCC
TCTCCGATTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGCCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGATCG
GCTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACAGACTGAGCGCTCGCACGCTCGTTTCATG
GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGAGTCCATTCCCAGACTAAGA
TCGGATCGGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAACATCGGCAGAACACAAGAGGGGAC
CAGGCTAATCCCGCCTTACGCATTCTACCGCTAAGGCTAACTGAGGCCGGCTGAGCACCCGCACG
CTAGTTTCATGGGTTTGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAA
GGTTGTGGCAGCAAGACCGGCAGCGAGATCGACAGCACGTAGAGAGGGATCAGGCTGATCCCCGA
CTTGCATATTATGCCTCTCTGGCCGGCCTCTTCGGCCAA
Found at i:17118974 original size:155 final size:156
Alignment explanation
Indices: 17118746--17119046 Score: 401
Period size: 155 Copynumber: 1.9 Consensus size: 156
17118736 CAGACTGGAC
** * * * *
17118746 CGAGGGTTGCGGTAGTAGGATCGGTAGCACATAGGGGGATCGAGCCGATCCTCGGCTTACGCATT
1 CGAGGGTTGCGACAGCAGGATCGATAGCACATAGGGAGATCGAGCCGATCCTCGGCTTACACATT
*
17118811 CCACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAG-T
66 CCACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
17118874 -TTCCATGTCTAAGCCCCAGCCAGAT
131 ATTCCATGTCTAAGCCCCAGCCAGAT
* * **
17118899 CGAGGGTTGCGACAGCAGGATCGATAGCACGTACGAGGAGATCGAGTCGATCCTCGGCTTGTACA
1 CGAGGGTTGCGACAGCAGGATCGATAGCACATA-G-GGAGATCGAGCCGATCCTCGGCTTACACA
** * * * *
17118964 TTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAG
64 TTCCACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAG
17119029 TTCATTCCATGTCTAAGC
129 TT-ATTCCATGTCTAAGC
17119047 ATATGTAGTT
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
153 28 0.22
154 1 0.01
155 77 0.62
156 4 0.03
157 1 0.01
159 14 0.11
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
CGAGGGTTGCGACAGCAGGATCGATAGCACATAGGGAGATCGAGCCGATCCTCGGCTTACACATT
CCACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
ATTCCATGTCTAAGCCCCAGCCAGAT
Found at i:17119735 original size:157 final size:158
Alignment explanation
Indices: 17119549--17119920 Score: 408
Period size: 159 Copynumber: 2.3 Consensus size: 158
17119539 CGACTGAGCA
* * * * *
17119549 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTCTAACCCCAG-CC-
1 CCCGAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTCTAACACCAGACCG
* * * * *
17119612 AGCCCGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGG-GGGACCGAGCAGATCCTCGGCTT
66 A-ACCAAGGGTTGCGGCAGCAGGACCGACAGCACGTAG-GGAGGGACCGAGCAGATCCTCGGCTT
*
17119676 GTGCATTATGCCACTTCGGTCGGCTCAGCG
129 GTGCATTATGCCACTCCGGTCGGCTCAGCG
* * * * * *
17119706 CCCGAACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCAGACC
1 CCCGAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATTCTAACACCAGACC
* * * * * * *
17119771 GAATCAAGGGTTGCGGCAGTAGGATCGACGGCACGTAGGGAGGGACTGGGCAGGTCCTCGGCTTG
65 GAACCAAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGAGGGACCGAGCAGATCCTCGGCTTG
* * *
17119836 TGCATTCTGCCTCTCCGGTCGGCTGAGCG
130 TGCATTATGCCACTCCGGTCGGCTCAGCG
* * * *
17119865 CCCGCACGCTCGTTTCATGGGTTGGTTTAGGCATACGAAGTTCATTCCATGTCTAA
1 CCCGAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-TCTAA
17119921 GCATACGGAG
Statistics
Matches: 175, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 38 0.22
158 18 0.10
159 118 0.67
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CCCGAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTCTAACACCAGACCG
AACCAAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGAGGGACCGAGCAGATCCTCGGCTTGT
GCATTATGCCACTCCGGTCGGCTCAGCG
Found at i:17119945 original size:26 final size:26
Alignment explanation
Indices: 17119895--17119947 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17119885 GTTGGTTTAG
*
17119895 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
17119921 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
17119947 G
1 G
17119948 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:17120123 original size:26 final size:26
Alignment explanation
Indices: 17120093--17120143 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17120083 TGACTTAGGC
17120093 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
17120119 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
17120144 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:17120126 original size:196 final size:197
Alignment explanation
Indices: 17119791--17120145 Score: 520
Period size: 196 Copynumber: 1.8 Consensus size: 197
17119781 TTGCGGCAGT
* * * * * *
17119791 AGGATCGACGGCACGTAGGGAGGGACTGGGCAGGTCCTCGGCTTGTGCATTCTGCCTCTCCGGTC
1 AGGATCGACAGCACGTAGGGAGGGACCGGGCAGGTCCTCGACTTATGCATTCTACCTCTCCGGCC
* * ** *
17119856 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGTTTAGGCATACGAAGTTCATTCCATGTCTAA
66 GGCTAAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
17119921 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGTTTACGACAGTAGGACCAACA
131 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGTTTACGACAGTAGGACCAACA
17119986 GC
196 GC
17119988 AGGATCGACAGCACGTAGGG-GGGACCGGGCCA-GTCC-CTGACTTATGCATTCTACCTCTCCGG
1 AGGATCGACAGCACGTAGGGAGGGACCGGG-CAGGTCCTC-GACTTATGCATTCTACCTCTCCGG
* *
17120050 CCGGCTAAGCGCCCGTACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
64 CCGGCTAAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTC
* *
17120114 TAAGTATACGGAGTTCATTCCCAGTCTAAGAT
128 TAAGCATACGGAGTTCATTCCCAATCTAAGAT
17120146 TGGACCAGAT
Statistics
Matches: 140, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
195 1 0.01
196 115 0.82
197 24 0.17
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
AGGATCGACAGCACGTAGGGAGGGACCGGGCAGGTCCTCGACTTATGCATTCTACCTCTCCGGCC
GGCTAAGCGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAA
GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGTTTACGACAGTAGGACCAACA
GC
Found at i:17121177 original size:26 final size:26
Alignment explanation
Indices: 17121140--17121192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17121130 GTTAACTTAG
*
17121140 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
17121166 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
17121192 G
1 G
17121193 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:17121676 original size:26 final size:25
Alignment explanation
Indices: 17121647--17121698 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17121637 GTTGGCTTAG
17121647 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
17121673 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17121698 G
1 G
17121699 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17122417 original size:26 final size:26
Alignment explanation
Indices: 17122388--17122440 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17122378 GTTGACTTAG
*
17122388 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
17122414 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17122440 G
1 G
17122441 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17122708 original size:158 final size:158
Alignment explanation
Indices: 17122414--17123093 Score: 659
Period size: 158 Copynumber: 4.3 Consensus size: 158
17122404 CCCAGTCTAA
* * * * ** * *
17122414 GCATATAGAGTTCATTCTCAGTCTAAGATCAAATCGGATCAAAGGTTACGATAACAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCAGGATCGGCA
* * * * * * *
17122479 GCACGCAGGGGGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGCT
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
17122544 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCGTTTCATGGGTTGGCTTAG
* * *
17122572 GCATACAGAGTTCATTCTCAGTTTAAGATCAGACCGGATTGAGGGTTACGATAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCAGGATCGGCA
* * * * *
17122637 GCACGTAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
17122702 CACACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCCCGTTTCATGGGTTGGCTTAG
** * * ** ** ** *
17122730 GCATAGGGAGTTCATTCCAAGTCAAAGCCCCAG-CCGGATTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCGGATTGAGGGTTACGATAGCAGGATC-GG
* * * * * *
17122793 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCTCTTC-GACTGGCTCAG
64 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTC-GGCTGAG
* * * * *
17122857 CGCCTGCACGCTCATTTCGTGGGTTGACTTAG
127 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * * * *
17122889 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGAGTTACGGTAGCAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCAGGATCGGCA
* * * * * * * * * **
17122954 GCACGCAGGGGGGATCGGGCCGAT-CCCGGCTTATGCATTCTGGCTCTTCGATCGACGGAGCATC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
17123018 CGCACGCTCGTTTTGA-GGGTTGGCTTAG
131 CGCACGCCCG-TTTCATGGGTTGGCTTAG
* * *
17123046 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTA
17123094 TGGCAGCAAG
Statistics
Matches: 430, Mismatches: 84, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
157 90 0.21
158 217 0.50
159 122 0.28
160 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGATAGCAGGATCGGCA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:17123045 original size:157 final size:156
Alignment explanation
Indices: 17122414--17123242 Score: 599
Period size: 158 Copynumber: 5.2 Consensus size: 156
17122404 CCCAGTCTAA
* * * * * * ** * * *
17122414 GCATATAGAGTTCATTCTCAGTCTAAGATCAAATCGGA-TCAAAGGTTACGATAACAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTACGGCAGCAAGATCGAC
* * ** * * ** * *
17122478 AGCACGCAGGGGGGACCAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGC
65 AGCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAG-CC
* * *
17122543 TCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
17122572 GCATACAGAGTTCATTCTCAGTTTAAGATCAGACCGGATTGAGGGTTACGATAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACA
* * * * * * *
17122637 GCACGTAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAG-CCC
* *
17122702 CACACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * ** * ** ** *
17122730 GCATAGGGAGTTCATTCCAAGTCAAAGCCCCAG-CCGGATTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTACGGCAGCAAGATC-GA
* * *
17122793 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCTCTTCGA-CTGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGCCGATCC-CGGCTTACGCATTCTGCCTCTTCGATC-GGCTGAG
* * *
17122857 CGCCTGCACGCTCATTTCGTGGGTTGACTTAG
126 C-CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17122889 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGAGTTACGGTAGCAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACA
* * * * * *
17122954 GCACGCAGGGGGGATCGGGCCGATCCCGGCTTATGCATTCTGGCTCTTCGATCGACGGAGCATCC
66 GCACGCAGGGGGGACCGGGCCGATCCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGC-CCC
* *
17123019 GCACGCTCGTTTTGAGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
17123046 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAAGATGAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGAT-----
* ** * *
17123111 GCAGGATTAATAGCACGCAGGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTACCTCTCCGA-
61 -C--G----ACAGCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTACGCATTCTGCCTCTTCGAT
* * * * * *
17123175 CTGGCTGAGTGCTCGCATGCTCATTTTGTGGGTTGGTTTAG
118 C-GGCTGAG-CCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17123216 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
17123243 CCACAGGCGG
Statistics
Matches: 546, Mismatches: 99, Indels: 40
0.80 0.14 0.06
Matches are distributed among these distances:
157 105 0.19
158 216 0.40
159 121 0.22
160 1 0.00
163 1 0.00
165 1 0.00
169 27 0.05
170 74 0.14
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAAGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17123436 original size:26 final size:26
Alignment explanation
Indices: 17123399--17123451 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123389 GTTGACTTAG
17123399 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* *
17123425 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTAATCCCCAGTCTAA
17123451 G
1 G
17123452 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:17123896 original size:26 final size:26
Alignment explanation
Indices: 17123867--17123919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123857 GTTAACTTAG
*
17123867 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
17123893 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17123919 G
1 G
17123920 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17124884 original size:26 final size:26
Alignment explanation
Indices: 17124848--17124900 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17124838 GTTGGCTTGG
*
17124848 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
17124874 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17124900 G
1 G
17124901 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17125905 original size:159 final size:158
Alignment explanation
Indices: 17125597--17126097 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 158
17125587 CACTATCTAC
* ** * **
17125597 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGATTATTGTGACAGCAGGATCGGCAG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCAACAG
* * * * *
17125662 CACGCAG-GGGGGATAGGGCCGATCTCTGACTT-TCGCATTCTGCCTCTCCGGTCGACTGAGTGC
66 CACGCAGAGGGGGATCGGGTCGATCCCTGACTTGT-GCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
17125725 CCGCACG-TCCGTTTTGTGGGTTGGCTTAG
130 CAGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** *
17125754 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACTGATGGTTGTGGCAGCAGGACCAAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATC-AGACCAGACTGATGGTTGTGGCAGCAGGATCAAC
* * * * * *
17125818 AGCACGCAGAGAGGAATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTCCAGTCGGCTCAGCG
64 AGCACGCAGAGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
17125883 CCTGCACGCTCATTTCGTGGGTTGACTTAG
129 CCAGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * ** * *
17125913 GCATACAAAGTTCATTTCCAGTCTAAGATCGGATCAAACTGAGGGTTGCAGTAGCAGGATCAACG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCAACA
* * * ** * *
17125978 GCACGCA-AGGGGGATCGGGTTGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGC
65 GCACGCAGAGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
17126042 CAGCACGCTTGTTTCGTGGGTTGGCTTAG
130 CAGCACGCTCGTTTCGTGGGTTGGCTTAG
17126071 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
17126098 CATACAGAGT
Statistics
Matches: 278, Mismatches: 58, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
157 23 0.08
158 130 0.47
159 118 0.42
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCAACAG
CACGCAGAGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
AGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17126070 original size:158 final size:158
Alignment explanation
Indices: 17125697--17126098 Score: 425
Period size: 159 Copynumber: 2.5 Consensus size: 158
17125687 CTGACTTTCG
* * * *
17125697 CATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGCATAGG
1 CATTCTGCCTCTCCGGTCG-CTGAGCGCCAGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACG
* * * **
17125761 GAGTTCATTCCATGTCTAAGCCCTAGCCAGACTGATGGTTGTGGCAGCAGGACCAACAGCACGCA
64 GAGTTCATTCCATGTCTAAGCCCGAGCCAAACTGAGGGTTGCAGCAGCAGGACCAACAGCACGCA
**
17125826 GAGAGGAATCGGGTCGATCCCCGACTTGTG
129 GAGAGGAATCGGGTCGATCCCCGACTTGCA
* * * * * * **
17125856 CATTATGCCTCTCCAGTCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAA
1 CATTCTGCCTCTCCGGTC-GCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * * *
17125921 AGTTCATTTCCA-GTCTAAGATCG-GATCAAACTGAGGGTTGCAGTAGCAGGATCAACGGCACGC
65 AGTTCA-TTCCATGTCTAAGCCCGAG-CCAAACTGAGGGTTGCAGCAGCAGGACCAACAGCACGC
* * * ** *
17125984 A-AGGGGGATCGGGTTGATCCTTGGCTTGCA
128 AGAGAGGAATCGGGTCGATCCCCGACTTGCA
* *
17126014 CATTCTGCCTCTCCGGCCAGCTGAGCGCCAGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGTC-GCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
17126079 AGTTCATTCCATGTCTAAGC
65 AGTTCATTCCATGTCTAAGC
17126099 ATACAGAGTT
Statistics
Matches: 196, Mismatches: 42, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.03
158 89 0.45
159 95 0.48
160 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
CATTCTGCCTCTCCGGTCGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCGAGCCAAACTGAGGGTTGCAGCAGCAGGACCAACAGCACGCAGA
GAGGAATCGGGTCGATCCCCGACTTGCA
Found at i:17126107 original size:26 final size:26
Alignment explanation
Indices: 17126071--17126123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17126061 GTTGGCTTAG
*
17126071 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17126097 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17126123 G
1 G
17126124 ATCAGACGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17127524 original size:26 final size:26
Alignment explanation
Indices: 17127494--17127546 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17127484 GTTGACTTAG
17127494 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
17127520 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17127546 G
1 G
17127547 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17134631 original size:26 final size:26
Alignment explanation
Indices: 17134595--17134645 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17134585 TTGACTTAGG
*
17134595 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGCCTAAA
*
17134621 CATACGGAGTTCATTCCCAGCCTAA
1 CATACGGAGTTCATCCCCAGCCTAA
17134646 GATTATATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGCCTAAA
Found at i:17135146 original size:26 final size:26
Alignment explanation
Indices: 17135096--17135148 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17135086 GTTGGCTTAG
* *
17135096 GCATACGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17135122 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17135148 G
1 G
17135149 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17135273 original size:184 final size:185
Alignment explanation
Indices: 17134937--17135306 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 185
17134927 GTTGACTTAG
* * *
17134937 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTACGGAAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGACTGAGGGTTACGGAAGCAGGATCGACA
* * * * * **
17135002 GCACACAGGGGTGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCACTTCGGTTGCCTGAGCGC
66 GCACACAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCACTCCGGCCGCCTGAGCGC
*
17135067 CTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
131 CTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * ** *
17135122 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-TCGGACTGAGGGTTGCGTCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACT-AGACTGAGGGTTACGGAAGCAGGATCGAC
* * * * *
17135186 AGCACGCAGGGG-GAACTAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
65 AGCACACAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCACTCCGGCCGCCTGAGCG
* *
17135250 CCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17135306 G
1 G
17135307 TCCCAATCGA
Statistics
Matches: 160, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
184 96 0.60
185 64 0.40
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGACTGAGGGTTACGGAAGCAGGATCGACA
GCACACAGGGGTGAACCAGGCCAATCCCCAGCTTGCGCATTCTGCCACTCCGGCCGCCTGAGCGC
CTGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17136224 original size:26 final size:26
Alignment explanation
Indices: 17136174--17136226 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136164 GTTGACTTAG
*
17136174 GCATACGAAGTTCATCACCAGTCTAA
1 GCATACGAAGTTCATCACCAATCTAA
*
17136200 GCATACGGAGTTCATTC-CCAATCTAA
1 GCATACGAAGTTCA-TCACCAATCTAA
17136226 G
1 G
17136227 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCACCAATCTAA
Found at i:17139163 original size:26 final size:26
Alignment explanation
Indices: 17139127--17139178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17139117 TTGACTTAGA
*
17139127 CATATGGAGTTCA-TCGCCAGTCTAAG
1 CATACGGAGTTCATTC-CCAGTCTAAG
17139153 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17139179 ATCGTCCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17140376 original size:26 final size:26
Alignment explanation
Indices: 17140347--17140399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17140337 GTTGACTTAG
17140347 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17140373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17140399 G
1 G
17140400 ATCGGTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17140667 original size:158 final size:157
Alignment explanation
Indices: 17140505--17141982 Score: 722
Period size: 158 Copynumber: 9.3 Consensus size: 157
17140495 TGAGTGCCCG
* ** *
17140505 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *
17140570 CAAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGAGGGATCGGGCCGATCCCTGACTTGCATA
66 CAAGGGTTGTGGCAGCGGGA-TGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGACTTGCATA
*
17140635 TTATGGCTCTCCGGCTAACTCAGCAACA
130 TTATGCCTCTCCGGCTAACTCAGCAACA
* * ** * * *
17140663 CACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TCGTCTAAGATCGAACAGGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCCCCAGCCGGA
* * * * * * * *
17140727 TCGAGGGTTGTGGCAGCAGGATCGACAGCACACA-A-ATGGGA-CTGGGTCGGT-CCTCGGCTTA
65 CCAAGGGTTGTGGCAGCGGGAT-GACAGCACGCAGAGA-GGGATC-GGGCCGATCCCT-GACTTG
** * * * * * *
17140788 CGCATTCTGCCTCTCCGACTGACTGAGTGC-TCG
126 CATATTATGCCTCTCCGGCTAACTCA--GCAACA
* * * * *
17140821 TACGCCCATTTTGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
1 CACGCTCGTTTCGTGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * *
17140885 CCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATCAGGCCGAT-CCTCAGCTTGCA
65 CCAAGGGTTGTGGCAGCGGGAT-GACAGCACGCAGAGAGGGATCGGGCCGATCCCTGA-CTTGCA
* * * * ** *
17140949 CAATATGCCTCTCCAG-TCAGCTCAGCTCCTG
128 TATTATGCCTCTCCGGCT-AACTCAGCAAC-A
* * * * * **
17140980 CACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAG-ATCAGACCGGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA
* *** * * * * * * * *
17141044 CCGAGGGTCACGGTAGCAGGATTGACAACATGCA-AGACGGACCGGGCTGATCCC-CAGCTTGC-
65 CCAAGGGTTGTGGCAGCGGGA-TGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGA-CTTGCA
* ** ** * **
17141106 TCATTCTGCCTCTCCAACTGGCTGAGTTCCCGCA
128 T-ATTATGCCTCTCCGGCTAACTCAG---CAACA
* * ** *
17141140 CAC-C-CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *
17141203 CAAGGGTTGTGGCAGCGGGACTTGGCAGCACGTAGAGAGGGATCGGGCCGATCCCTGACTTGCAT
66 CAAGGGTTGTGGCAGCGGGA--TGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGACTTGCAT
*
17141268 ATTATGGCTCTCCGGCTAACTCAGCAACA
129 ATTATGCCTCTCCGGCTAACTCAGCAACA
* * * ** * * * *
17141297 CACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-CGTCTAAGATCGAACAGGAT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * * * *
17141361 CGAGGGTTGTGGCAGCAGGATCGACAGCACACA-A-ATGGGA-CTGGGTCGGT-CCTCGGCTTAC
66 CAAGGGTTGTGGCAGCGGGAT-GACAGCACGCAGAGA-GGGATC-GGGCCGATCCCT-GACTTGC
** * * * * * *
17141422 GCATTCTGCCTCTCCGACTGACTGAGTGC-TCG
127 ATATTATGCCTCTCCGGCTAACTCA--GCAACA
* * * * *
17141454 TACGCCCATTTTGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
1 CACGCTCGTTTCGTGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * *
17141518 CCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATCAGGCCGAT-CCTCAGCTTGCA
65 CCAAGGGTTGTGGCAGCGGGAT-GACAGCACGCAGAGAGGGATCGGGCCGATCCCTGA-CTTGCA
* * * * ** *
17141582 CAATATGCCTCTCCAG-TCAGCTCAGCTCCTG
128 TATTATGCCTCTCCGGCT-AACTCAGCAAC-A
* * * * * **
17141613 CACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAG-ATCAGACCGGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA
* *** * * * * * * * *
17141677 CCGAGGGTCACGGTAGCAGGATTGACAACATGC--AGACGGACCGGGCTGATCCC-CAGCTTGC-
65 CCAAGGGTTGTGGCAGCGGGA-TGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGA-CTTGCA
* ** ** * **
17141738 TCATTCTGCCTCTCCAACTGGCTGAGTTCCCGCA
128 T-ATTATGCCTCTCCGGCTAACTCAG---CAACA
* * ** * * *
17141772 CAC-C-CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * * * * * * * * *
17141835 CGAGGGTTGTGACAGCGGGACCGGCAGCATGCAGAGGGGGATCGAGCTGACCCCCGACTTGTAAA
66 CAAGGGTTGTGGCAGCGGGA-TGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGACTTGCATA
* ** *
17141900 TTATGCCTCTCC-GATCGGCTCAGTGC-CCGA
130 TTATGCCTCTCCGGCT-AACTCA--GCAAC-A
*
17141930 -ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAAGTTCATTCCCA-GTCTAAG
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATT-CCATGTCTAAG
17141983 ATCAGACCGG
Statistics
Matches: 978, Mismatches: 273, Indels: 136
0.71 0.20 0.10
Matches are distributed among these distances:
155 5 0.01
156 41 0.04
157 194 0.20
158 343 0.35
159 321 0.33
160 66 0.07
161 8 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CAAGGGTTGTGGCAGCGGGATGACAGCACGCAGAGAGGGATCGGGCCGATCCCTGACTTGCATAT
TATGCCTCTCCGGCTAACTCAGCAACA
Found at i:17141492 original size:316 final size:315
Alignment explanation
Indices: 17140468--17142141 Score: 1778
Period size: 316 Copynumber: 5.3 Consensus size: 315
17140458 CAATCCCTGA
* * * * *
17140468 CTTACGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
*
17140533 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACT-GGCAG
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTCGGCAG
* * * * * * *
17140597 CACGTAGAGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCC-GGCTAACTCAGCAA
131 CACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCAGTC-AGCTCAGCAC
* * *
17140661 C-ACACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTCGTCTAAGATC-GAACA
195 CTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-CGTCTAAGATCAG-ACC
* ** * * *
17140724 GGATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGG
258 GGACCGAGGGTTACGGTAGCAGGATCGACAGCACACAAA-GGGACTGGG-CGATCCCCGG
* * *
17140784 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
* * *
17140849 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGA-TCGACAG
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTCGGCAG
* * * * *
17140913 CACGCCGAGGGGGATCAGGCCGAT-CCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTC
131 CACGCAGAGGGGGATCGGGCCGATCCCTGA-CTTGCACATTATGCCTCTCCAGTCAGCTCAGCAC
* * * * **
17140977 CTGCACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCG
195 CTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC-CCGTCTAAGATCAGACCG
* * * ** * * *
17141042 GACCGAGGGTCACGGTAGCAGGATTGACAACATGCAAGACGGACCGGGCTGATCCCCAG
259 GACCGAGGGTTACGGTAGCAGGATCGACAGCACACAA-AGGGACTGGGC-GATCCCCGG
* * * * * * *
17141101 CTTGCTCATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
* *
17141166 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTTGGCAG
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTCGGCAG
* * * * * * *
17141231 CACGTAGAGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCC-GGCTAACTCAGCAA
131 CACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCAGTC-AGCTCAGCAC
* * *
17141295 C-ACACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATC-GAACAG
195 CTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATCAG-ACCG
* ** * * *
17141358 GATCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGG
259 GACCGAGGGTTACGGTAGCAGGATCGACAGCACACAAA-GGGACTGGG-CGATCCCCGG
* * *
17141417 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
* * *
17141482 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGA-TCGACAG
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTCGGCAG
* * * * *
17141546 CACGCCGAGGGGGATCAGGCCGAT-CCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTC
131 CACGCAGAGGGGGATCGGGCCGATCCCTGA-CTTGCACATTATGCCTCTCCAGTCAGCTCAGCAC
* * * * **
17141610 CTGCACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCG
195 CTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC-CCGTCTAAGATCAGACCG
* * * ** * * * *
17141675 GACCGAGGGTCACGGTAGCAGGATTGACAACATGCAGACGGACCGGGCTGATCCCCAG
259 GACCGAGGGTTACGGTAGCAGGATCGACAGCACACAAAGGGACTGGGC-GATCCCCGG
* * * * * * *
17141733 CTTGCTCATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
* * * * *
17141798 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGATCGAGGGTTGTGACAGCGGGAC-CGGCA
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCAAGGGTTGTGGCAGCGGGACTCGGCA
* * * * * * * *
17141861 GCATGCAGAGGGGGATCGAGCTGACCCCCGACTTGTAAATTATGCCTCTCC-GATCGGCTCAGTG
130 GCACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCAG-TCAGCTCA--G
* *
17141925 C-CCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATCAG
192 CACCTACACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCC-GTCTAAGATCAG
* * * * ** *
17141988 ACCGGACTGATGGTTACAGTAGTAGGATCGACAGCACACAGGGGGGACTGGGCCGATCCCCGA
255 ACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACACA-AAGGGACTGGG-CGATCCCCGG
* * * * * * * * *
17142051 CTTGCACATTCTACCTCTCCGACCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGC
1 CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
* *
17142116 ATACGGAATTCATTCCAAGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
17142142 TTAAGGAGTT
Statistics
Matches: 1114, Mismatches: 214, Indels: 58
0.80 0.15 0.04
Matches are distributed among these distances:
314 4 0.00
315 59 0.05
316 557 0.50
317 342 0.31
318 147 0.13
319 5 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (315 bp):
CTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTCGGCAG
CACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCACATTATGCCTCTCCAGTCAGCTCAGCACC
TACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATCAGACCGGA
CCGAGGGTTACGGTAGCAGGATCGACAGCACACAAAGGGACTGGGCGATCCCCGG
Found at i:17141585 original size:633 final size:631
Alignment explanation
Indices: 17140474--17142141 Score: 2682
Period size: 633 Copynumber: 2.6 Consensus size: 631
17140464 CTGACTTACG
** * * * * * *
17140474 CATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
17140539 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGTAG
66 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGTAG
17140604 AGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCTAACTCAGCAACACACGCT
131 AGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCTAACTCAGCAACACACGCT
17140669 GGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTCGTCTAAGATCGAACAGGATCGAGGG
196 GGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-CGTCTAAGATCGAACAGGATCGAGGG
17140734 TTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGCATTCTGCC
260 TTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGCATTCTGCC
17140799 TCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTC
325 TCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTC
17140864 CATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATC
390 CATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATC
17140929 AGGCCGATCCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTCCTGCACGCTCATTTCGT
455 AGGCCGATCCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTCCTGCACGCTCATTTCGT
17140994 GGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCGGACCGAGGGTCACGGTA
520 GGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCGGACCGAGGGTCACGGTA
17141059 GCAGGATTGACAACATGCAAGACGGACCGGGCTGATCCCCAGCTTGCT
585 GCAGGATTGACAACATGC-AGACGGACCGGGCTGATCCCCAGCTTGCT
17141107 CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
17141172 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTTGGCAGCACGTA
66 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGAC-TGGCAGCACGTA
17141237 GAGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCTAACTCAGCAACACACGC
130 GAGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCTAACTCAGCAACACACGC
17141302 TGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATCGAACAGGATCGAGGG
195 TGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATCGAACAGGATCGAGGG
17141367 TTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGCATTCTGCC
260 TTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGCATTCTGCC
17141432 TCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTC
325 TCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTC
17141497 CATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATC
390 CATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATC
17141562 AGGCCGATCCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTCCTGCACGCTCATTTCGT
455 AGGCCGATCCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTCCTGCACGCTCATTTCGT
17141627 GGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCGGACCGAGGGTCACGGTA
520 GGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCGGACCGAGGGTCACGGTA
17141692 GCAGGATTGACAACATGCAGACGGACCGGGCTGATCCCCAGCTTGCT
585 GCAGGATTGACAACATGCAGACGGACCGGGCTGATCCCCAGCTTGCT
17141739 CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
* * * * * * *
17141804 AGTTCATTCCATGTCTAAGCCCCAGTC-AGATCGAGGGTTGTGACAGCGGGACCGGCAGCATGCA
66 AGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGTA
* * * * * * * * * ** *
17141868 GAGGGGGATCGAGCTGACCCCCGACTTGTAAATTATGCCTCTCC-GATCGGCTCAGTGC-CCGA-
130 GAGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCT-AACTCA--GCAAC-AC
* * * *
17141930 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAAGTTCATTCCCAGTCTAAGATC-AGACCGGA
191 ACGCTGGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCC-GTCTAAGATCGA-ACAGGA
* *** * * *** * * * * * *
17141994 -CTGATGGTTACAGTAGTAGGATCGACAGCACACAGGGGGGACTGGGCCGATCCCCGACTTGCAC
253 TC-GAGGGTTGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGC
* * * * * * * *
17142058 ATTCTACCTCTCCGACCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
317 ATTCTGCCTCTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGA
* *
17142123 ATTCATTCCAAGTCTAAGC
382 GTTCATTCCATGTCTAAGC
17142142 TTAAGGAGTT
Statistics
Matches: 969, Mismatches: 56, Indels: 19
0.93 0.05 0.02
Matches are distributed among these distances:
630 2 0.00
631 50 0.05
632 171 0.18
633 494 0.51
634 252 0.26
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (631 bp):
CATTCTGCCTCTCCAACTGGCTGAGTTCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGTAG
AGAGGGATCGGGCCGATCCCTGACTTGCATATTATGGCTCTCCGGCTAACTCAGCAACACACGCT
GGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCGTCTAAGATCGAACAGGATCGAGGGT
TGTGGCAGCAGGATCGACAGCACACAAATGGGACTGGGTCGGTCCTCGGCTTACGCATTCTGCCT
CTCCGACTGACTGAGTGCTCGTACGCCCATTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATCA
GGCCGATCCTCAGCTTGCACAATATGCCTCTCCAGTCAGCTCAGCTCCTGCACGCTCATTTCGTG
GATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAGATCAGACCGGACCGAGGGTCACGGTAG
CAGGATTGACAACATGCAGACGGACCGGGCTGATCCCCAGCTTGCT
Found at i:17141676 original size:159 final size:159
Alignment explanation
Indices: 17140504--17142141 Score: 899
Period size: 159 Copynumber: 10.3 Consensus size: 159
17140494 CTGAGTGCCC
* * ** * *
17140504 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCGGA
* ** *
17140569 CCAAGGGTTGTGGCAGCGGGA-CTGGCAGCACGTAGAGAGGGATCGGGCCGATCC-CTGACTTGC
66 CCAAGGGTTGTGGCAGCGGGATC-GACAGCACGCCGAGAGGGATCGGGCCGATCCTCAG-CTTGC
* * * * **
17140632 ATATTATGGCTCTCC-GGCTAACTCAGCAAC-
129 ACATTATGCCTCTCCAGAC-AGCTCAGCTCCT
* ** * * * *
17140662 ACACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TCGTCTAAG-ATCGAACAG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCA-CCAGCCG
* * * * * * * *
17140725 GATCGAGGGTTGTGGCAGCAGGATCGACAGCAC-AC-AAATGGGA-CTGGGTCGGTCCTCGGCTT
64 GACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGA-GGGATC-GGGCCGATCCTCAGCTT
* * * * * *
17140787 ACGCATTCTGCCTCTCC-GACTGACTGAG-TGCT
127 GCACATTATGCCTCTCCAGACAG-CTCAGCTCCT
* * * * *
17140819 CGTACGCCCATTTTGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
1 -GCACGCTCATTTCGTGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCG
* * *
17140883 GACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATCAGGCCGATCCTCAGCTTGC
64 GACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAGCTTGC
* *
17140948 ACAATATGCCTCTCCAGTCAGCTCAGCTCCT
129 ACATTATGCCTCTCCAGACAGCTCAGCTCCT
* * * * *
17140979 GCACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAG-ATCAGACCGG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAG-CCGG
* *** * * * * * * * * * * *
17141043 ACCGAGGGTCACGGTAGCAGGATTGACAACATG-CAAGACGGACCGGGCTGATCCCCAGCTTGCT
65 ACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAGCTTGCA
* * * * *
17141107 CATTCTGCCTCTCCA-ACTGGCTGAGTTCCC
130 CATTATGCCTCTCCAGAC-AGCTCAGCTCCT
* * * * * ** * *
17141137 GCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCGGA
* * ** *
17141202 CCAAGGGTTGTGGCAGCGGGACTTGGCAGCACGTAGAGAGGGATCGGGCCGATCC-CTGACTTGC
66 CCAAGGGTTGTGGCAGCGGGA-TCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAG-CTTGC
* * * * **
17141266 ATATTATGGCTCTCC-GGCTAACTCAGCAAC-
129 ACATTATGCCTCTCCAGAC-AGCTCAGCTCCT
* ** * * * * *
17141296 ACACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-CGTCTAAG-ATCGAACAGG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCA-CCAGCCGG
* * * * * * * * *
17141359 ATCGAGGGTTGTGGCAGCAGGATCGACAGCAC-AC-AAATGGGA-CTGGGTCGGTCCTCGGCTTA
65 ACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGA-GGGATC-GGGCCGATCCTCAGCTTG
* * * * *
17141421 CGCATTCTGCCTCTCC-GACTGACTGAG-TGCT
128 CACATTATGCCTCTCCAGACAG-CTCAGCTCCT
* * * * *
17141452 CGTACGCCCATTTTGTGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
1 -GCACGCTCATTTCGTGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCG
* * *
17141516 GACCAAAGGTTGTGGCAGCGGGATCGACAGCACGCCGAGGGGGATCAGGCCGATCCTCAGCTTGC
64 GACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAGCTTGC
* *
17141581 ACAATATGCCTCTCCAGTCAGCTCAGCTCCT
129 ACATTATGCCTCTCCAGACAGCTCAGCTCCT
* * * * *
17141612 GCACGCTCATTTCGTGGATTGAATTAGGCATACAGAGTTCATTCAAAGTCTAAG-ATCAGACCGG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAG-CCGG
* *** * * * * * * * * * *
17141676 ACCGAGGGTCACGGTAGCAGGATTGACAACATG-C-AGACGGACCGGGCTGATCCCCAGCTTGCT
65 ACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAGCTTGCA
* * * * *
17141739 CATTCTGCCTCTCCA-ACTGGCTGAGTTCCC
130 CATTATGCCTCTCCAGAC-AGCTCAGCTCCT
* * * * * ** * * *
17141769 GCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCGGA
* * * * * * * * * * * * *
17141834 TCGAGGGTTGTGACAGCGGGACCGGCAGCATGCAGAGGGGGATCGAGCTGA-CCCCCGACTTGTA
66 CCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAG-CTTGCA
* * *
17141898 AATTATGCCTCTCC-GATCGGCTCAG-TGCCC
130 CATTATGCCTCTCCAGA-CAGCTCAGCT-CCT
* * * *
17141928 GAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAAGTTCATTCCCA-GTCTAAG-ATCAGACC
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATT-CCATGTCTAAGCACCAG-CC
** * *** * ** * * * *
17141991 GGACTGATGGTTACAGTAGTAGGATCGACAGCACACAG-GGGGGA-CTGGGCCGATCC-CCGACT
63 GGACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATC-GGGCCGATCCTCAG-CT
* * * * *
17142053 TGCACATTCTACCTCTCC-GACCGGCTGAGC-GCT
126 TGCACATTATGCCTCTCCAGA-CAGCTCAGCTCCT
* * * *
17142086 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCAAGTCTAAGC
1 -GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
17142142 TTAAGGAGTT
Statistics
Matches: 1105, Mismatches: 316, Indels: 117
0.72 0.21 0.08
Matches are distributed among these distances:
155 4 0.00
156 39 0.04
157 194 0.18
158 361 0.33
159 405 0.37
160 99 0.09
161 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGCCGGA
CCAAGGGTTGTGGCAGCGGGATCGACAGCACGCCGAGAGGGATCGGGCCGATCCTCAGCTTGCAC
ATTATGCCTCTCCAGACAGCTCAGCTCCT
Found at i:17143686 original size:159 final size:158
Alignment explanation
Indices: 17143364--17143879 Score: 407
Period size: 158 Copynumber: 3.3 Consensus size: 158
17143354 TGCTACTTTC
* * ***** * * * * *
17143364 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGATTGGATCGGATCAAGGGTTACA
1 GTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCAAACCAGATCGAGGGTTGCG
* * * ** * * * * *
17143428 GCAGTAGGATCGACAGTACAAAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCC
65 GCAGCAGGATCGAGAGCACGCAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCC
** * * * * * * *
17143493 GGTCTACTGAGCGCCCGCACTCCTGTTTC
130 GACCGACTCAGCGCCCGTACGCTTATTTT
* * * * * * *
17143522 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGATCGAGGGTTGCGG
* *
17143587 CAGCGGGA-CTG-GCAGCACGTAGAGGGGGA-TCGAGCCGATCCCC-GACTTGCGCATTATGCCT
66 CAGCAGGATC-GAG-AGCACGCAG-GGGGGACT-GAGCCGATCCCCAG-CTTGCGCATTATGCCT
**
17143648 CTCCGACCGGTTCAGCGCCCGTACGCTTATTTT
126 CTCCGACCGACTCAGCGCCCGTACGCTTATTTT
* * * **
17143681 TTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GT-TAAGATCAAACCAGATCGAGGGTTGCG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGATCGAGGGTTGCG
* * * * * * *
17143744 GTAGCAGGATCGAGAGCATGCAGGGGGGACTGGGTCGGTCCTCAGCTTGCGCATTCTGCCTCTCC
65 GCAGCAGGATCGAGAGCACGCAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCC
* *
17143809 GACCGACTGAGTGCCCGTACGCTTATTTT
130 GACCGACTCAGCGCCCGTACGCTTATTTT
*
17143838 GTGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17143880 ATACGGAGTT
Statistics
Matches: 279, Mismatches: 66, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 89 0.32
158 102 0.37
159 83 0.30
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGATCGAGGGTTGCGG
CAGCAGGATCGAGAGCACGCAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCG
ACCGACTCAGCGCCCGTACGCTTATTTT
Found at i:17143902 original size:26 final size:26
Alignment explanation
Indices: 17143847--17143904 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
17143837 TGTGGGTTGG
*
17143847 CTAAGGCATACGGAGTTCATTCCATGT
1 CTAA-GCATACGGAGTTCATTCCATAT
17143874 CTAAGCATACGGAGTTCATTCCCA-AT
1 CTAAGCATACGGAGTTCATT-CCATAT
17143900 CTAAG
1 CTAAG
17143905 ATCAGACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCATAT
Found at i:17144029 original size:13 final size:13
Alignment explanation
Indices: 17143999--17144032 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
17143989 GTACATTCTG
*
17143999 CCTCTCCGATCGG
1 CCTCTCCGATCGA
*
17144012 TCTCTCCGATCGA
1 CCTCTCCGATCGA
17144025 CCTCTCCG
1 CCTCTCCG
17144033 GCCGACTGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.47, G:0.18, T:0.26
Consensus pattern (13 bp):
CCTCTCCGATCGA
Found at i:17144661 original size:165 final size:166
Alignment explanation
Indices: 17144424--17144732 Score: 381
Period size: 165 Copynumber: 1.9 Consensus size: 166
17144414 TAGGCATGCA
* ** * *
17144424 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAAGATCAAGAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTACGGCAGCAAGATCAACAGCACGCA
* * * * * *
17144489 GGGGGGACCGGGCCGATCC-CTGACTTGCACATTGTGCCTCTCCGGTCGGC-CAGCGCCTACACG
66 AGGGGGACCAGGCCGATCCTC-GACTTGCACATTCTACCTCTCCGGTCGACTCAGCGCCCACACG
17144552 CTCGTTTCGTGGGTTGAATCCCCAGTCTAAGCATACG
130 CTCGTTTCGTGGGTTGAATCCCCAGTCTAAGCATACG
* * * * **
17144589 GAGTTCATTCCCAGTCTAAGATCT-AACCAGGCTGAGGGTTACGGTAGCAGGATTGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCGAGGGTTACGGCAGCAAGATCAACAGCACGC
* * * * *
17144653 AAGGGGGACTAGGCTGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGACTGAGCGCCCGCACG
65 AAGGGGGACCAGGCCGATCCTCGACTTGCACATTCTACCTCTCCGGTCGACTCAGCGCCCACACG
17144718 CTCGTTTCGTGGGTT
130 CTCGTTTCGTGGGTT
17144733 AGCTTAGGCA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
165 92 0.77
166 27 0.23
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (166 bp):
GAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTACGGCAGCAAGATCAACAGCACGCA
AGGGGGACCAGGCCGATCCTCGACTTGCACATTCTACCTCTCCGGTCGACTCAGCGCCCACACGC
TCGTTTCGTGGGTTGAATCCCCAGTCTAAGCATACG
Found at i:17144789 original size:26 final size:26
Alignment explanation
Indices: 17144740--17144792 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17144730 GTTAGCTTAG
*
17144740 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAATTCATCCCATGTCTAA
*
17144766 GCATACGGAGTTCATCCTCA-GTCTAA
1 GCATACGGAATTCATCC-CATGTCTAA
17144792 G
1 G
17144793 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCATGTCTAA
Found at i:17145994 original size:158 final size:157
Alignment explanation
Indices: 17145549--17146042 Score: 423
Period size: 158 Copynumber: 3.1 Consensus size: 157
17145539 TAAGCATATG
* * * * * *
17145549 GAGTTCATTCCCT-GTCTAAGATCAGATCGAATCGAGGGTTGCAGCAGCAAGATCGA-AAGCACG
1 GAGTTCATT-CCTAGTCTAAGATCATACCGACT-GAGGGTTGCGGTAGCAGGATCGACAA-CACG
* * * * * *
17145612 CAGGGGCGACCGGACCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGA-TCGGTTGAGCACCCGC
63 CAGGGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTT-CGACT-GGCTGAGCGCCCGC
* **
17145675 ACGCTTGTTTCATGGGTTGGCTTAGGCATAGG
126 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACA
* * * * * * * *
17145707 GAGTTCATT-CGATGTCTAA-ACCCCTACCGGACCGAGGGTTGTGGTAGCTGGA-CTAGCAGCAC
1 GAGTTCATTCCTA-GTCTAAGA-TCATACC-GACTGAGGGTTGCGGTAGCAGGATCGA-CAACAC
* * * * * * * * *
17145769 GGAGAGAGGGAACGAGCCGGTCCCTGGTTTGCGCATTATGCCTC-TCTGTC-GGCTTAGCGCCCA
62 GCAG-GGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GACTGGCTGAGCGCCCG
* *
17145832 CACGCTTGTTTCGTGCGTTGACTTAGGCATACA
125 CACGCTTGTTTCGTGGGTTGGCTTAGGCATACA
17145865 GAGTTCATTCCTAGTCTAAGATCATACCAGACTGAGGGTTGCGGTAGCAGGATCGACAACACGCA
1 GAGTTCATTCCTAGTCTAAGATCATACC-GACTGAGGGTTGCGGTAGCAGGATCGACAACACGCA
* * * * *
17145930 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTTCGACTGACTGAGTGCCCGCACGC
65 GGGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGC
* * *
17145995 TCGTTTTGTGGGTTGGCTTAGGCATATA
130 TTGTTTCGTGGGTTGGCTTAGGCATACA
17146023 GAGTTCATTCCATA-TCTAAG
1 GAGTTCATTCC-TAGTCTAAG
17146043 CATACGGACT
Statistics
Matches: 258, Mismatches: 62, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
156 1 0.00
157 36 0.14
158 180 0.70
159 41 0.16
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCTAGTCTAAGATCATACCGACTGAGGGTTGCGGTAGCAGGATCGACAACACGCAG
GGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCT
TGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:17151488 original size:26 final size:26
Alignment explanation
Indices: 17151459--17151511 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
17151449 GTTGGCTTAG
17151459 GCATACGGA-GTTCATT-CCATGTCTAA
1 GCATACGGACG-TCATTCCCA-GTCTAA
*
17151485 GCATATGGACGTCATTCCCAGTCTAA
1 GCATACGGACGTCATTCCCAGTCTAA
17151511 G
1 G
17151512 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGACGTCATTCCCAGTCTAA
Found at i:17152190 original size:26 final size:26
Alignment explanation
Indices: 17152154--17152206 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17152144 GTTGGCTTAG
17152154 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17152180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17152206 G
1 G
17152207 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17159853 original size:26 final size:26
Alignment explanation
Indices: 17159817--17159869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17159807 GTTGACTTAG
17159817 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17159843 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17159869 G
1 G
17159870 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17160336 original size:26 final size:26
Alignment explanation
Indices: 17160306--17160358 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17160296 GTTGGCTTAG
*
17160306 GCATATAGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17160332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17160358 G
1 G
17160359 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17160691 original size:26 final size:26
Alignment explanation
Indices: 17160662--17160740 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17160652 GTTGGCTTAG
17160662 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
*
17160688 GCATACAGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
* *
17160714 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTTATTCCATGTCTAA
17160740 G
1 G
17160741 ATCGAACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCATGTCTAA
Found at i:17161085 original size:26 final size:26
Alignment explanation
Indices: 17161055--17161107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17161045 GTTGACTTAG
17161055 GCATACAAAGTTCAACCCCAGTCTAA
1 GCATACAAAGTTCAACCCCAGTCTAA
* *
17161081 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAAAGTTCAACCCCAGTCTAA
17161107 G
1 G
17161108 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (26 bp):
GCATACAAAGTTCAACCCCAGTCTAA
Found at i:17161282 original size:26 final size:26
Alignment explanation
Indices: 17161252--17161303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17161242 GTTGACTTAG
17161252 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
17161278 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17161304 TATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Done.