Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 118 of 138
Found at i:17161377 original size:197 final size:197
Alignment explanation
Indices: 17161012--17161389 Score: 524
Period size: 197 Copynumber: 1.9 Consensus size: 197
17161002 ATGCCTCTTC
* * * * *
17161012 GGCCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCAACCCCAGT
1 GGCCGACTGAGCGCCCGCACGCACATTTCATAGGTTGACTTAGGCATACAAAGTTCAACCCCAGT
* * * *
17161077 CTAAGCATACAGAGTTCAATCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGTAGGACC
66 CTAAGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACC
* *
17161142 AGCAGCACGCAAGAGGGATCGAGTCGATCCTCGGCTTGTGCATTCTGCCTCCCCAGCTGACCTCT
131 AGCAGCACGCAAGAGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCCCCAGCTGACCTCT
17161207 CT
196 CT
* *
17161209 GGCCGACTGAGCGCCCGCACGCACATTTCATAGGTTGACTTAGGCATACGAAGTTCATCCCCAGT
1 GGCCGACTGAGCGCCCGCACGCACATTTCATAGGTTGACTTAGGCATACAAAGTTCAACCCCAGT
* * * *
17161274 CTAAGCATACAGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
66 CTAAGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACC
* * * * * * *
17161339 GGTAGCATGCAGGGGGGACCGGGCCGATCC-CTGGCTTGTGCATTTTGCCTC
131 AGCAGCACGCAAGAGGGACCGAGCCGATCCTC-GGCTTGTGCATTCTGCCTC
17161390 TCCGATCGGC
Statistics
Matches: 156, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
196 1 0.01
197 155 0.99
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (197 bp):
GGCCGACTGAGCGCCCGCACGCACATTTCATAGGTTGACTTAGGCATACAAAGTTCAACCCCAGT
CTAAGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGACC
AGCAGCACGCAAGAGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCCCCAGCTGACCTCT
CT
Found at i:17161579 original size:159 final size:158
Alignment explanation
Indices: 17161280--17161621 Score: 384
Period size: 159 Copynumber: 2.2 Consensus size: 158
17161270 CAGTCTAAGC
* * *** * *
17161280 ATACAGAGTTCATTCCCAGTCTAA-TATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAG
1 ATACAGAGTTAATTCTCAGTCTAAGCCCCAG-CCAGACAGAGGGTTGCGGCAACAGGATCGGTAG
* * * * * * *
17161344 CATGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGATCGGCTGAGCGCTC
65 CACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGCGCCC
* * *
17161409 ACACGCCCGTTTCGTGTGTTGGCTTAGGA
130 ACACGCCCGTTTCATGGGTTGACTTAGGA
** * *
17161438 ATAGGGAGTTCATTC-CATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAAC-GAGATCGGTA
1 ATACAGAGTTAATTCTCA-GTCTAAGCCCCAGCCAGACAGAGGGTTGCGGCAACAG-GATCGGTA
* *
17161501 GCACGCAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGTTCAGCGC
64 GCACGCAG-GGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGCGC
** * *
17161566 CCGTACGCTCGTTTCATGGGTTGACTTAGGC
128 CCACACGCCCGTTTCATGGGTTGACTTAGGA
17161597 ATACAGAGTTAATTCTCAGTCTAAG
1 ATACAGAGTTAATTCTCAGTCTAAG
17161622 ATTAGGTCGG
Statistics
Matches: 152, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 53 0.35
159 94 0.62
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACAGAGTTAATTCTCAGTCTAAGCCCCAGCCAGACAGAGGGTTGCGGCAACAGGATCGGTAGC
ACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGCGCCCA
CACGCCCGTTTCATGGGTTGACTTAGGA
Found at i:17161640 original size:159 final size:156
Alignment explanation
Indices: 17161278--17161779 Score: 411
Period size: 158 Copynumber: 3.2 Consensus size: 156
17161268 CCCAGTCTAA
* * *
17161278 GCATACAGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGGCCAGA-CGAGGGTTGCGGCAACAGGATCGGTA
* * * * * * *
17161343 GCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGATCGGCTGAGCGCT
64 GCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGCGCC
* * *
17161408 CACACGCCCGTTTCGTGTGTTGGCTTAG
129 CACACGCCCGTTTCATGGGTTGACTTAG
* ** ** *
17161436 GAATAGGGAGTTCATTCCATGTCTAAGCCCCA-GCCAGACAGAGGGTTGTGGCAAC-GAGATCGG
1 GCATACAGAGTTCATTCCA-GTCTAAG-ATCAGGCCAGAC-GAGGGTTGCGGCAACAG-GATCGG
* *
17161499 TAGCACGCAGAGGGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGTTCAGC
62 TAGCACGCAG-GGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGC
** *
17161564 GCCCGTACGCTCGTTTCATGGGTTGACTTAG
126 GCCCACACGCCCGTTTCATGGGTTGACTTAG
* * * * * ** * **
17161595 GCATACAGAGTTAATTCTCAGTCTAAGATTAGGTCGGATCGAGGGTTACTACAGCAGGATCGACA
1 GCATACAGAGTTCATTC-CAGTCTAAGATCAGGCCAGA-CGAGGGTTGCGGCAACAGGATCGGTA
** * * * * * * * *
17161660 GCACGCAGGGAGGGACC-GATCGAT-CCTCAGCTTGCTCATTCTACCTCT-CTGACCGACTGAGC
64 GCACGCAGGG-GGGACCGGGCCAATCCCT-GGCTTGCGCATTATGCCTCTAC-GATCGGCTCAGC
* * * *
17161722 GCCCACACGCGCATTTCGTGGGTTGGCTTAG
126 GCCCACACGCCCGTTTCATGGGTTGACTTAG
*
17161753 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
17161780 CATACAGAGT
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 11 0.04
158 130 0.48
159 126 0.46
160 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGGCCAGACGAGGGTTGCGGCAACAGGATCGGTAGC
ACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTACGATCGGCTCAGCGCCCA
CACGCCCGTTTCATGGGTTGACTTAG
Found at i:17161789 original size:26 final size:26
Alignment explanation
Indices: 17161753--17161805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17161743 GTTGGCTTAG
*
17161753 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17161779 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17161805 G
1 G
17161806 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17162346 original size:26 final size:26
Alignment explanation
Indices: 17162317--17162369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17162307 GTTGGCTTTG
17162317 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17162343 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17162369 G
1 G
17162370 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17163100 original size:26 final size:26
Alignment explanation
Indices: 17163064--17163116 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17163054 GTTGACTTAG
17163064 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17163090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17163116 G
1 G
17163117 ATCAGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17163497 original size:159 final size:157
Alignment explanation
Indices: 17163089--17163591 Score: 452
Period size: 159 Copynumber: 3.2 Consensus size: 157
17163079 CCCCAGTCTA
** * * *
17163089 AGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATGGGACTGAGGGTTGCGGCAGCAGGATCCG
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGAT-CG
*** * * * * * *
17163153 -CAGCACGCAG-GGGGGATCGGGCTGATCCCTGGCTTGTGCATTTTGCCTCTCCGATCGGTTGAG
64 ACAGCATAAAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCT-AA
17163216 CGCCCGCACG-TCCGTTTCGTGGGTTGGCTT
128 CGCCCGCACGCT-CGTTTCGTGGGTTGGCTT
* * * ** * *
17163246 AGCATAGGGAGTTAATTCCATGTGTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGT-GAGACCG
1 AGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGTAG-GATCG
* ** *
17163309 ACAACATGCAAA-A-GGGGATCAAGCCGAT-CCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCT
64 ACAGCAT--AAAGAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGGTCGGCT
* *
17163371 CAACGCCCGCACGCTCGTTTCATGGGTTGACTT
126 -AACGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * *
17163404 ATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTACGATAGTAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCG
* * * * *
17163468 ACAGCATAAAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCAGCTAAG
64 ACAGCATAAAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTAA-
* *
17163533 CGCCCGTACGCTCG-TTCTGTGGGTTGGCTA
128 CGCCCGCACGCTCGTTTC-GTGGGTTGGCTT
*
17163563 AGGCATACAGAGTTCATTCCATGTCTAAG
1 A-GCATACGGAGTTCATTCCATGTCTAAG
17163592 CATATGAAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
156 6 0.02
157 50 0.18
158 78 0.28
159 133 0.49
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
AGCATAAAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTAACGC
CCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:17169006 original size:26 final size:26
Alignment explanation
Indices: 17168970--17169022 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168960 GTTGGCTTAG
17168970 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17168996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17169022 G
1 G
17169023 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17169682 original size:158 final size:157
Alignment explanation
Indices: 17169298--17169686 Score: 405
Period size: 158 Copynumber: 2.5 Consensus size: 157
17169288 TCGACCGACT
* ** *
17169298 TCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
1 TCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-
* * * * * *
17169363 CCA-GTCAAAGATCTGACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGACCG
65 CCATGTCTAACACCAGACCAGATCGAGGGTTACGACAACAGGATCGACAGCACGTAGGGGGACCA
* ** * *
17169427 GGTCGATCACCGGCTTGTGCTTTCTGCC
130 GATCGATCACCGGCTTAAGCATTATGCC
* * * * * *
17169455 TCTTCGGTCGACTGAGTGCCTGCACGCCTGTTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATTT
1 TCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TT
* * ** ** *
17169519 GCATGTCTAACCCCAG-CCAGA-CTGAGGGTTGTGGTAACGGGATC-AGCAGCACGTAGAGGGGG
65 CCATGTCTAACACCAGACCAGATC-GAGGGTTACGACAACAGGATCGA-CAGCACGT--AGGGGG
17169581 ACCAGATCGATC-CTC-GCTTAAGCGATTATGCC
126 ACCAGATCGATCAC-CGGCTTAAGC-ATTATGCC
17169613 TCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
1 TCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
17169678 CATGTCTAA
66 CATGTCTAA
17169687 GCATACGGAG
Statistics
Matches: 188, Mismatches: 35, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
155 2 0.01
156 54 0.29
157 43 0.23
158 65 0.35
159 24 0.13
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
TCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAACACCAGACCAGATCGAGGGTTACGACAACAGGATCGACAGCACGTAGGGGGACCAG
ATCGATCACCGGCTTAAGCATTATGCC
Found at i:17169697 original size:26 final size:27
Alignment explanation
Indices: 17169661--17169714 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
17169651 GTTGGCTTAG
17169661 GCATACGGAG-TTCATT-CCATGTCTAA
1 GCATACGGAGTTTCATTCCCA-GTCTAA
17169687 GCATACGGAGTTTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATTCCCAGTCTAA
17169714 G
1 G
17169715 ATTTTTGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 10 0.38
27 13 0.50
28 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGTCTAA
Found at i:17170414 original size:26 final size:26
Alignment explanation
Indices: 17170385--17170437 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17170375 GTTGACTTAG
* *
17170385 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
17170411 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
17170437 G
1 G
17170438 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:17179236 original size:159 final size:157
Alignment explanation
Indices: 17179060--17179739 Score: 565
Period size: 159 Copynumber: 4.3 Consensus size: 157
17179050 AGCACGTCCG
* *
17179060 TTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGT
* * *
17179124 TGTGGCAGCGGGA-CTGACAGCACGCAGTGGGGGACCAGGCTGATCCTCGACTTGCGCATTATGC
65 TGTGACAGCAGGATC-GACAGCACGTAG-GGGGGACC-GGCTGATCCTCGACTTGCGCATTATGC
* * * *
17179188 CTCTCCAACCGGCTCAACGCCCGTACGCTCA
127 CTCTCCGACCGACTCAGCGCCCGCACGCTCA
* ** * * * * *
17179219 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCAAAGATCAGATCGAACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCGAGGGT
* * * * * * *
17179283 TGCGATAGCAGGATCGACAGCACATAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCT
65 TGTGACAGCAGGATCGACAGCACGTAGGGGGGACCG-GCTGATCCTCGACTTGCGCATTATGCCT
* * * * * *
17179348 CTCCGATCGACTGAGTGCCCACACACTCG
129 CTCCGACCGACTCAGCGCCCGCACGCTCA
* * * * * *
17179377 TTTCATGGGTTGGCTTTGGCATAGTGAGTTCATTCCATGTATAAGTCCCA-ACTGGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGT
* * **
17179441 TGTGGCAGCAGGA-CTGACAGCACGTACAGGGGGACCGGGCTGAT-CTCCTG-CTTGCAAATTAT
65 TGTGACAGCAGGATC-GACAGCACGTA-GGGGGGACC-GGCTGATCCT-C-GACTTGCGCATTAT
* * * * * *
17179503 GCCTCTTCGGCCGGCTCAGCACCCGTATGCTCA
125 GCCTCTCCGACCGACTCAGCGCCCGCACGCTCA
* * * * *
17179536 TTTCGTGGGTTGACTTATGCATACG-GAGTTCATTCC-TAGTCTAAGATCAGACTGGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATA-GTGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCGAGGG
* *
17179599 TTGCT-ACAGCAGGATCGACAGCACGTAGGGGGGACCGGTCTGATCC-CCAGCTTGCAGCATTCT
64 TTG-TGACAGCAGGATCGACAGCACGTAGGGGGGACCGG-CTGATCCTCGA-CTTGC-GCATTAT
* * * * * *
17179662 GCCTCTCCGATCTACTGAGTGCCCGCAAGCTCG
125 GCCTCTCCGACCGACTCAGCGCCCGCACGCTCA
*
17179695 TTTCGTGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATAG-TGAGTTCATTCCATGTCTAAG
17179740 CATACGGTGT
Statistics
Matches: 404, Mismatches: 93, Indels: 48
0.74 0.17 0.09
Matches are distributed among these distances:
157 6 0.01
158 141 0.35
159 250 0.62
160 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTT
GTGACAGCAGGATCGACAGCACGTAGGGGGGACCGGCTGATCCTCGACTTGCGCATTATGCCTCT
CCGACCGACTCAGCGCCCGCACGCTCA
Found at i:17179504 original size:317 final size:317
Alignment explanation
Indices: 17178957--17179740 Score: 953
Period size: 317 Copynumber: 2.5 Consensus size: 317
17178947 ATTGGACCAG
* * * * * * ** *
17178957 ACCAAGGGTTGCGGCAGCAGGATCGATAGCATGA-AAGGAGGACCGGGCC-ATTCCCTGGCTTAC
1 ACCAAGGGTTGCGACAGCAGGATCGACAGCA-CATAGGGGGGACCGGTCCGA-TCCCCAGCTTGC
* * *
17179020 GCATTCTGCCTCTCCGGTCGGCTGA--GCACCAGCAC-GTCCGTTTCGTGGGTTGGCTTAGGCAT
64 GCATTCTGCCTCTCCGATCGACTGAGTGC-CCA-CACACT-CGTTTCGTGGGTTGGCTTAGGCAT
*
17179082 AGTGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACTGACAGCAC
126 AGTGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCAC
** ** *
17179147 GCAGTGGGGGACCAGGCTGATCCTCGACTTGCGCATTATGCCTCTCCAACCGGCTCAACGCCCGT
191 GCACAGGGGGACCAGGCTGATCCTCGACTTGCAAATTATGCCTCTCCAACCGGCTCAACACCCGT
17179212 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCAAAGATCAGA-TCGA
256 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCAAAGATCAGACT-GA
* *
17179274 ACCAAGGGTTGCGATAGCAGGATCGACAGCACATAGGGGGGATCGAG-CCGATCCCC-GACTTGC
1 ACCAAGGGTTGCGACAGCAGGATCGACAGCACATAGGGGGGACCG-GTCCGATCCCCAG-CTTGC
* *
17179337 GCATTCTGCCTCTCCGATCGACTGAGTGCCCACACACTCGTTTCATGGGTTGGCTTTGGCATAGT
64 GCATTCTGCCTCTCCGATCGACTGAGTGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAGT
* * ** * *
17179402 GAGTTCATTCCATGTATAAGTCCCAACTGGACTGAGGGTTGTGGCAGCAGGACTGACAGCACGTA
129 GAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACGCA
* * ** *
17179467 CAGGGGGACCGGGCTGAT-CTCCTG-CTTGCAAATTATGCCTCTTCGGCCGGCTCAGCACCCGTA
194 CAGGGGGACCAGGCTGATCCT-C-GACTTGCAAATTATGCCTCTCCAACCGGCTCAACACCCGTA
* * * * *
17179530 TGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGG
257 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCAAAGATCAGACTGA
** * * *
17179591 ACTGAGGGTTGCTACAGCAGGATCGACAGCACGTAGGGGGGACCGGTCTGATCCCCAGCTTGCAG
1 ACCAAGGGTTGCGACAGCAGGATCGACAGCACATAGGGGGGACCGGTCCGATCCCCAGCTTGC-G
* *
17179656 CATTCTGCCTCTCCGATCTACTGAGTGCCCGCA-AGCTCGTTTCGTGGGTTGGCTTAGGCAT-GC
65 CATTCTGCCTCTCCGATCGACTGAGTGCCCACACA-CTCGTTTCGTGGGTTGGCTTAGGCATAG-
*
17179719 GGAGTTCATTCCATGTCTAAGC
128 TGAGTTCATTCCATGTCTAAGC
17179741 ATACGGTGTT
Statistics
Matches: 402, Mismatches: 50, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
316 5 0.01
317 311 0.77
318 84 0.21
319 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
ACCAAGGGTTGCGACAGCAGGATCGACAGCACATAGGGGGGACCGGTCCGATCCCCAGCTTGCGC
ATTCTGCCTCTCCGATCGACTGAGTGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAGTGA
GTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCACGCACA
GGGGGACCAGGCTGATCCTCGACTTGCAAATTATGCCTCTCCAACCGGCTCAACACCCGTACGCT
CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCAAAGATCAGACTGA
Found at i:17180470 original size:25 final size:25
Alignment explanation
Indices: 17180436--17180487 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
17180426 TGACTTAGGC
17180436 ATATGGAGTTCATCCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
*
17180461 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
17180486 AT
1 AT
17180488 CAGACCGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
ATATGGAGTTCATCCCCAGTCTAAG
Found at i:17180923 original size:158 final size:157
Alignment explanation
Indices: 17180465--17180959 Score: 504
Period size: 159 Copynumber: 3.1 Consensus size: 157
17180455 TCTAAGATAT
* * *
17180465 GGAGTTCATTCCCA-GTCTAAGATCAGACCGAATCGA-GGTTTGCAGCAGCAGGATCGATAGCAC
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTGCA-CAGCAGGATCGACAGCAC
* * * * * *
17180528 GTA-AGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTA
64 GTAGGGGGGATCGGGCTGATCCCT-ACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCA
* *
17180592 CGC-CTGTTTCATGGGTTGGCTTAGGCATAG
128 CGCTC-GTTTCGTGGGTTGGCTTAGGCATAC
** * ** * * * ** * * *
17180622 GGAGTTCATTCCATGTCTAAGCCCTGGTCAGACTGAGGGTTGGGGCAGCGGGA-CTGGCAGAACG
1 GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTTGCACAGCAGGATC-GACAGCACG
* ** *
17180686 TAGAGGGGGA-CTGGG-TCGATCCTCTACTTGCGCATTATGCCTCTCCGATCGGCTCGA-CGCCC
65 TAG-GGGGGATC-GGGCT-GATCC-CTACTTGCGCATTCTGCCTCTCCGGCCGG-TTGAGCGCCC
* *
17180748 GCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
125 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
17180781 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTTGCACAGCAGGATCGACAGCACT
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTGCACAGCAGGATCGACAGCACG
* *
17180845 TAGGGGGGATCGGGCTGATCCCTAACTTACGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGCAC
65 TAGGGGGGATCGGGCTGATCCCT-ACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCAC
*
17180910 TCTCGTTTCGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
17180939 GGAGTTTATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
17180960 CATACGGAGT
Statistics
Matches: 267, Mismatches: 54, Indels: 33
0.75 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 46 0.17
158 93 0.35
159 115 0.43
160 9 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTTGCACAGCAGGATCGACAGCACGT
AGGGGGGATCGGGCTGATCCCTACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:17180962 original size:26 final size:26
Alignment explanation
Indices: 17180933--17180985 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17180923 GTTGGCTTAG
*
17180933 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17180959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17180985 G
1 G
17180986 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17181482 original size:26 final size:26
Alignment explanation
Indices: 17181448--17181499 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17181438 TGGCTTAGGC
17181448 ATATAGAGTTCATT-CCATGTCTAAGA
1 ATATAGAGTTCATTCCCA-GTCTAAGA
*
17181474 ATATGGAGTTCATTCCCAGTCTAAGA
1 ATATAGAGTTCATTCCCAGTCTAAGA
17181500 TTTTGAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (26 bp):
ATATAGAGTTCATTCCCAGTCTAAGA
Found at i:17182182 original size:26 final size:25
Alignment explanation
Indices: 17182146--17182197 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
17182136 GTTGGCTTAG
17182146 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
17182172 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17182197 G
1 G
17182198 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17183390 original size:26 final size:26
Alignment explanation
Indices: 17183360--17183412 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17183350 GTTGGCTTAG
17183360 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17183386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17183412 G
1 G
17183413 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17183511 original size:159 final size:158
Alignment explanation
Indices: 17183307--17183611 Score: 443
Period size: 159 Copynumber: 1.9 Consensus size: 158
17183297 CTTGCGCATT
* * *
17183307 CTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTT
1 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTT
* *
17183372 CATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGC
66 CA-TCCATAGCCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACCAAGGGTTGC
* * *
17183435 GGCCGTAGGATCGGCAGCACACCGAGGGGAC
128 GACAGTAGGATCGACAGCACACCGAGGGGAC
** * *
17183466 CTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTTATTTCATGGGTTGACTTAGGCATATGGAGTT
1 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTT
* *
17183531 CATCCCTAGCCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGAC
66 CATCCATAGCCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGAC
17183596 AGTAGGATCGACAGCA
131 AGTAGGATCGACAGCA
17183612 TGCAGGGGGA
Statistics
Matches: 130, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
158 59 0.45
159 71 0.55
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTT
CATCCATAGCCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGAC
AGTAGGATCGACAGCACACCGAGGGGAC
Found at i:17183562 original size:26 final size:25
Alignment explanation
Indices: 17183519--17183570 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
17183509 GTTGACTTAG
17183519 GCATATGGAGTTCATCCCTAGCCTAA
1 GCATATGGAGTTCATCCC-AGCCTAA
*
17183545 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCA-TCCCAGCCTAA
17183570 G
1 G
17183571 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGCCTAA
Found at i:17183851 original size:159 final size:159
Alignment explanation
Indices: 17183683--17184046 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
17183673 CGCATGCCCA
* * * * *
17183683 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCTGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACTGAGGCT
** ** * * *
17183747 TGTGGCAGCAGGACC-AGCAGCAC-TCAGAGGGGGACCGGG-CAGATCCCTGGCTCGCGTACTAT
66 TACGGCAGCAGGACCGA-CAAAACGT-AG-GGGGGACCGGGTC-GATCCCCGACTCGCGCACTAT
* ** *
17183809 GCCTCTTCGGTCGACTCAGTGCCCGCACGCTCG
127 GCCTCTCCGACCGACTCAGTACCCGCACGCTCG
* * * * * *
17183842 TTTCGTGGGTTGACCTATGCATACGAAGTTCATTCCCA-GTCAAAG-ATCAGATCAGACTGAGGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACTGAGGC
* * * * *
17183905 TTACGGTAGCAGGATCGACAAAACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCC
65 TTACGGCAGCAGGACCGACAAAACGTAGGGGGGACCGGGTCGATCCCCGACTCGCGCACTATGCC
*
17183970 TCTCCGACCGACTGAGTACCCGCACGCTCG
130 TCTCCGACCGACTCAGTACCCGCACGCTCG
*
17184000 TTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17184047 TACGGAGTAC
Statistics
Matches: 164, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 92 0.56
159 64 0.39
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACTGAGGCT
TACGGCAGCAGGACCGACAAAACGTAGGGGGGACCGGGTCGATCCCCGACTCGCGCACTATGCCT
CTCCGACCGACTCAGTACCCGCACGCTCG
Found at i:17184054 original size:26 final size:26
Alignment explanation
Indices: 17184018--17184070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184008 GTTGGCTTAG
*
17184018 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
17184044 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
17184070 G
1 G
17184071 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:17185045 original size:159 final size:159
Alignment explanation
Indices: 17184868--17185247 Score: 435
Period size: 159 Copynumber: 2.4 Consensus size: 159
17184858 CGATCGGTTG
* * * * *
17184868 AGCGTCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCC
1 AGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
** * * *
17184933 AG-TCAGACCGAGGGTTGTGTCAGTGGGATCGACAGCA-CACAGAGGGGGACCGAGCCGATCCCT
66 AGATCAGACCGAGGGTTACGGCAGTAGGATCGACAGCAGCA-AG-GGGGGACCGAGCCGATCCCC
* ** *
17184996 GGCTTGTGCATTATCCCTCTCCGGTTGGCTC
129 AGCTTGTGCATTATCCCTCTCCGGCCGACTC
* * * *
17185027 AGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * *
17185090 CAGATCGGACTGAGGGTTACGGCAGTAGGATCGACAGCATGCAAGGGGGGACCGGGTCGGTCCCC
65 CAGATCAGACCGAGGGTTACGGCAGTAGGATCGACAGCA-GCAAGGGGGGACCGAGCCGATCCCC
* * * *
17185155 AGCTTGTGCATTCTGCCTCTTCGGCCGACTG
129 AGCTTGTGCATTATCCCTCTCCGGCCGACTC
* *
17185186 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 AGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17185248 GTACGGAGTT
Statistics
Matches: 184, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 6 0.03
159 171 0.93
160 5 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGATCAGACCGAGGGTTACGGCAGTAGGATCGACAGCAGCAAGGGGGGACCGAGCCGATCCCCAG
CTTGTGCATTATCCCTCTCCGGCCGACTC
Found at i:17186632 original size:26 final size:26
Alignment explanation
Indices: 17186596--17186645 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17186586 TTGATTTAGG
*
17186596 CATACGGAGTTCATCCCCAATCTATA
1 CATACGAAGTTCATCCCCAATCTATA
* *
17186622 CATACGAAGTTCATTCCCAGTCTA
1 CATACGAAGTTCATCCCCAATCTA
17186646 AGGTCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTATA
Found at i:17186771 original size:343 final size:342
Alignment explanation
Indices: 17186227--17186944 Score: 897
Period size: 343 Copynumber: 2.1 Consensus size: 342
17186217 TGAGCACCCA
* * * *
17186227 CACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGGTCATCCCTAGTCTAAGCATACGGAGTTT
1 CACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGGTCATCCCCAATCTAAGCATACGAAGTTC
** * * *
17186292 ATTTTCAGTCTAAGATGGACCGGACCGAAGGTTACGACTGTAGGATCGACAGCACGCAGGGGGGA
66 ATTCCCAGTCTAAGATAGACCAGACCGAAGGTTACGACAGTAGGATCGACAGCACGCAGGGGGGA
* * * * * * *
17186357 TCGAGTCGATCCCCGGCTTATGCATTCTGCCTCTCCCATCTGCTGAGTGCCCGCACGTCTGTTTT
131 TCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCATCGGCTGAGTCCCCGCACGTCCGTTTC
* * * *
17186422 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGA-ATAGGAGTTGTG
196 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCTAGCCAGACAGAGG-GTTGTG
* * ** * * *
17186486 GCAGCGGGACCGATAGCATGCAGAGGGGGATTGGGCTGATCCCCGGCTTACGTATTATGCCTCTT
260 GCAGCGGCACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTC
17186551 CGACCGACTCAGCGCCCG
325 CGACCGACTCAGCGCCCG
* * * *
17186569 CACGCTCATTTCGTGGGTTGATTTAGGCATACGGAGTTCATCCCCAATCTATA-CATACGAAGTT
1 CACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGGTCATCCCCAATCTA-AGCATACGAAGTT
* * *
17186633 CATTCCCAGTCTAAGGTCAGACCAGATC-AAGGGTTAC-AGCAGTAGGATCGGCAGCACGCAGGG
65 CATTCCCAGTCTAAGAT-AGACCAGACCGAA-GGTTACGA-CAGTAGGATCGACAGCACGCAGGG
* * * **
17186696 GGGATCGGGCCTATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAG-CCCCAGCACGTCC
127 GGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCATCGGCTGAGTCCCC-GCACGTCC
* *
17186760 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGGCCTAGCCAGACCGAGGGT
191 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCTAGCCAGACAGAGGGT
* * *
17186825 TGTGGCAGCGGCACCGATAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCC
256 TGTGGCAGCGGCACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCC
* * * * *
17186890 TCTCCGGCTGGCTCAGTGCCTG
321 TCTCCGACCGACTCAGCGCCCG
*
17186912 TACGCTCGTTCCGTGGGTTGACTTAGGCATACG
1 CACGCTCGTTCCGTGGGTTGACTTAGGCATACG
17186945 ATTTTCATTC
Statistics
Matches: 317, Mismatches: 53, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
342 74 0.23
343 240 0.76
344 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
CACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGGTCATCCCCAATCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATAGACCAGACCGAAGGTTACGACAGTAGGATCGACAGCACGCAGGGGGGA
TCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCCATCGGCTGAGTCCCCGCACGTCCGTTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCTAGCCAGACAGAGGGTTGTGG
CAGCGGCACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCC
GACCGACTCAGCGCCCG
Found at i:17186929 original size:159 final size:157
Alignment explanation
Indices: 17186685--17187118 Score: 394
Period size: 159 Copynumber: 2.7 Consensus size: 157
17186675 TAGGATCGGC
* * * * * * * * *
17186685 AGCACGCAGGGGGGATCGGGCCTATCCCTGACTTACGCATTCTGCCTCTCCG-GTCGGCTGAGC-
1 AGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACT-GGCTCAGCA
* * *
17186748 CCCAGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGGCCTAG
65 CCC-GTACGCT-CGTTCCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCGAAGACC-AG
* *
17186812 -CCAGACCGAGGGTTGTGGCAGC-GGCACCGAT
126 ACCAGACCGAGGGTTGCGGCAGCAAG-ACCGAT
* * * * * **
17186843 AGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTG
1 AGCACGCAGA-GGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCA
* * * * * * *
17186908 CCTGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGATTTTCATTCCCA-GTCTAAGATCAGAC
65 CCCGTACGCTCGTTCCATGGGTTGGCTTAGGCATAGGA-GTTCATT-CCATGTCGAAGACCAGAC
* * * *
17186972 CGGACTGAGGGTTGCGGTAGCAAGATCGAT
128 CAGACCGAGGGTTGCGGCAGCAAGACCGAT
* * * * *
17187002 AGCATGCAGAGGGGATCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCAC
1 AGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCAC
*
17187067 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 CCGTACGCTCGTTCCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTC
17187119 TAAGCATATG
Statistics
Matches: 220, Mismatches: 46, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 96 0.44
159 113 0.51
160 8 0.04
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
AGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCAC
CCGTACGCTCGTTCCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCGAAGACCAGACCAG
ACCGAGGGTTGCGGCAGCAAGACCGAT
Found at i:17187087 original size:158 final size:155
Alignment explanation
Indices: 17186622--17187122 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 155
17186612 CCAATCTATA
* * * * **
17186622 CATACGAAGTTCATTCCCAGTCTAAGGTCAGACCAGA-TCAAGGGTTACAGCAGTAGGATCGGCA
1 CATACG-AGTTCATTCCCAGTCTAAGGTCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGATA
* * * * *
17186686 GCACGCAGGGGGGATCGGGCCTATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCCCC
64 GCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGCT-GGCTGAGCCCC
*
17186751 AGCACG-TCCGTTTCATGGGTTGGCTTAGG
128 -GTACGCT-CGTTTCATGGGTTGGCTTAGG
* * * * * *
17186780 CATAGGGAGTTCATT-CCATGTCGAAGGCCTAG-CCAGACCGAGGGTTGTGGCAGC-GGCACCGA
1 CATA-CGAGTTCATTCCCA-GTCTAAGGTC-AGACCAGACTGAGGGTTGCGGCAGCAGG-ATCGA
* * * * * *
17186842 TAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGT
62 TAGCACGCAGA-GGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-GCTGGCTGAG-
* * * * *
17186907 GCCTGTACGCTCGTTCCGTGGGTTGACTTAGG
124 CCCCGTACGCTCGTTTCATGGGTTGGCTTAGG
* * * * *
17186939 CATACGATTTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGATAG
1 CATACGA-GTTCATTCCCAGTCTAAGGTCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGATAG
* * *
17187004 CATGCAGAGGGGATCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCC
65 CACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-CTGGCTGAGC-CCC
17187069 GTACGCTCGTTTCATGGGTTGGCTTAGG
128 GTACGCTCGTTTCATGGGTTGGCTTAGG
17187097 CATACGGAGTTCATT-CCATGTCTAAG
1 CATAC-GAGTTCATTCCCA-GTCTAAG
17187123 CATATGGAGT
Statistics
Matches: 271, Mismatches: 55, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
157 9 0.03
158 138 0.51
159 115 0.42
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
CATACGAGTTCATTCCCAGTCTAAGGTCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGATAGC
ACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGCTGGCTGAGCCCCGTA
CGCTCGTTTCATGGGTTGGCTTAGG
Found at i:17188170 original size:26 final size:26
Alignment explanation
Indices: 17188141--17188193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17188131 GTTGACTTAT
17188141 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* * *
17188167 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
17188193 G
1 G
17188194 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:17188449 original size:343 final size:343
Alignment explanation
Indices: 17187785--17188509 Score: 945
Period size: 343 Copynumber: 2.1 Consensus size: 343
17187775 CCCGCTCGCT
* * *
17187785 TGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17187850 GATTAGACTGGATCGAGGGTTGTGACAGCAGGATCGGTAGCACGTAAGGGGGACCGGACCGATCC
66 GATCAGACTGAATCGAGGGTTGCGACAGCAGGATCGGCAACACGTAAGGGGGACCGGACCGAGCC
* * * **
17187915 CCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACGTCCGTTTCATGGGTTGGCTT
131 CCGACTTGCAAATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTT
* *
17187980 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCGGGACCAG
196 AGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCAG
* * ** * * **
17188045 CAGCACGCAGAGAGGGGCCGGGTCGATCCTCGTCTTGCTTATTATACCTCTTCGGCCGGCTCAAC
261 CAGCACGCAGAGAGGGGCCGGGTCGACCCTCGACTTGCACATTACACATCTTCAACCGGCTCAAC
* *
17188110 ACCCGTACGTTCATTTCA
326 ACCCGCACGCTCATTTCA
* *
17188128 TGGGTTGACTTATGCATACGGAGATCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
17188193 GATCAGATTGAA-CTGAGGGTTGCGGTAGCAGGATCTGCAACACGTAGGGGGGACCGGGCCGAGC
66 GATCAGACTGAATC-GAGGGTTGCGACAGCAGGATCGGCAACACGTAAGGGGGACCGGACCGAGC
** * *
17188257 CTTGACTTGCAAATTCTGCCTCTTCGATCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCT
130 CCCGACTTGCAAATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCT
*
17188322 TAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCGGGACT
195 TAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTGTGGCAGCGGGACC
* * * *
17188386 GGCAGCATGCAGAG-GGGGATCGGG-CTGACCCTCGACTTGCACATTACGCATCTTCAACCGGCT
259 AGCAGCACGCAGAGAGGGG-CCGGGTC-GACCCTCGACTTGCACATTACACATCTTCAACCGGCT
*** *
17188449 CAGTGCCCGCACGCTCGTTTCA
322 CAACACCCGCACGCTCATTTCA
* *
17188471 TGGGTTGACTTATGCATACGGAGTTCATTCCCTGTCTAA
1 TGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAA
17188510 TATCAGACTG
Statistics
Matches: 328, Mismatches: 50, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
342 7 0.02
343 321 0.98
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
TGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACTGAATCGAGGGTTGCGACAGCAGGATCGGCAACACGTAAGGGGGACCGGACCGAGCC
CCGACTTGCAAATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTT
AGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCAG
CAGCACGCAGAGAGGGGCCGGGTCGACCCTCGACTTGCACATTACACATCTTCAACCGGCTCAAC
ACCCGCACGCTCATTTCA
Found at i:17190866 original size:159 final size:158
Alignment explanation
Indices: 17190636--17191066 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 158
17190626 GGTAGCTCGT
* * * * * * * *
17190636 AGGGGG-GACCGAGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAGTGCTCGCAC
1 AGGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCAC
* * * * * *
17190700 GCCCGTTTCGTTGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGA
66 GCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGATCAA
* * **
17190765 GGGTTGTGGCAACGGGACCGGTAACA-AG
130 GGGTTATGGCAACAGGACCGACAACACAG
* * ** *
17190793 CAGAGGGG-GACCGGG-CTGATCCCCGGCTTGCGTATTATGCCTCTTCGGTCGGCTCAGCGCCCG
1 -AG-GGGGAGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCG
* * * * ** *
17190856 CACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCGGATCAGA
63 CACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGA
* * ** * *
17190920 TCAAGGGTTATGGTAGCAGGATTGACAGCACAT
126 TCAAGGGTTATGGCAACAGGACCGACAACACAG
* *
17190953 AGGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCAC
1 AGGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCAC
*
17191018 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
66 GCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
17191067 CCATACGAAG
Statistics
Matches: 217, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
158 11 0.05
159 200 0.92
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCAC
GCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGATCAAG
GGTTATGGCAACAGGACCGACAACACAG
Found at i:17191071 original size:26 final size:26
Alignment explanation
Indices: 17191042--17191092 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17191032 TTGGCTTAGG
* *
17191042 CATACGGAGTTTATT-CCATGTCTAAC
1 CATACGAAGTTCATTCCCA-GTCTAAC
17191068 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
17191093 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:17192023 original size:184 final size:183
Alignment explanation
Indices: 17191690--17192146 Score: 546
Period size: 184 Copynumber: 2.5 Consensus size: 183
17191680 TACCACCCAT
*
17191690 TCGATCCCCAGCTTGCGCA-TCTTGCCTC-TCTGGTCGGCTGAGTGCCCGCACGCTAGTTTCGTG
1 TCGATCCCCAGCTTGCGCATTC-TGCCTCTTC-GGTCGGCTGAGTGCCCGCACTCT-GTTTCGTG
* ** *
17191753 GGTTGACCTAGGCATACGGAGTTCATCCGCCATCTAAGCATATGAAGTTCATTCCCAGTCTAAGA
63 GGTTGACATAGGCATACGGAGTTCATCCGCCATCTAAGCATACAAAGTTCATTCCAAGTCTAAGA
** * * * *
17191818 TTGGACCGGACCCAAGGTTGCGACAGCAGGATCGGCAGCATGCAGGGGGGACTGGG
128 TCAGACCGGACCCAAGGTTGCGACAGCAGGATAGGCAGCACGCAAGGGGGACCGGG
* **
17191874 TCGAT-CCCAGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACTCTCGTTTCGTGG
1 TCGATCCCCA-GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACTCT-GTTTCGTGG
* ** * *
17191938 GTTGACATAGGCATACGGAGTTCATCC-CCAGTCTAATCATACAAAGTTTTTTCCAAGTTTTAGA
64 GTTGACATAGGCATACGGAGTTCATCCGCCA-TCTAAGCATACAAAGTTCATTCCAAGTCTAAGA
* * * *
17192002 TCAGACTGGACCGAGGGTTGCGACAGCAGGATAGGTAGCACGCAAGGGGGACCGGG
128 TCAGACCGGACCCAAGGTTGCGACAGCAGGATAGGCAGCACGCAAGGGGGACCGGG
* * *
17192058 -CTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGGACGTCTGTTTCGTGG
1 TC-GATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCAC-TCTGTTTCGTGG
* * *
17192122 GTTGGCTTAGGCATAGGGAGTTCAT
64 GTTGACATAGGCATACGGAGTTCAT
17192147 TCCATGTCTA
Statistics
Matches: 233, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
183 8 0.03
184 214 0.92
185 11 0.05
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (183 bp):
TCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACTCTGTTTCGTGGGT
TGACATAGGCATACGGAGTTCATCCGCCATCTAAGCATACAAAGTTCATTCCAAGTCTAAGATCA
GACCGGACCCAAGGTTGCGACAGCAGGATAGGCAGCACGCAAGGGGGACCGGG
Found at i:17192280 original size:158 final size:156
Alignment explanation
Indices: 17192010--17192476 Score: 419
Period size: 158 Copynumber: 2.9 Consensus size: 156
17192000 GATCAGACTG
* * ** *
17192010 GACCGAGGGTTGCGACAG-CAGGATAGGTAGCACGCA-AGGGGGACCGGG-CTGATCCCCAGCTT
1 GACCGAGGGTTGCGGCAGCCA-GATCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCC-GCTT
* * *
17192072 GCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGGACGTCTGTTTCGTGGGTTGGCTTAGGCATA
63 GCGCATTCTGCCTCT-TGGTCGGCTGAGTGCCCGCACGTC-GTTTCGTGGGTTGGCTTAGGCATA
* **
17192137 GGGAGTTCATTCCATGTCTAAGCCCTAG-CTG
126 CGGAGTTCATTCCATGTCTAAGCCC-AGACCA
* * ** *
17192168 GATCGAGGGTTGTGGCA-CGGGATCGACAGCCCGCAGAGGGGGATCGGGTCGATCCCCGCCTTGC
1 GACCGAGGGTTGCGGCAGCCAGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCG-CTTGC
* * * * *
17192232 GCATTATGCCTCTTAGG-CTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAT
65 GCATTCTGCCTCTT-GGTC-GGCTGAGTGCCCGCACG-TCGTTTCGTGGGTTGGCTTAGGCATAC
* **
17192296 GGAGTTCATTCCCA-GTGTAAGATCAGACCA
127 GGAGTTCATT-CCATGTCTAAGCCCAGACCA
* * ** *
17192326 GACCGAGGGTTGCGGTAGCCAGATCGACAGCACGCAG-GGGATGATCGGGTCGATCCTTGACTTA
1 GACCGAGGGTTGCGGCAGCCAGATCGACAGCACGCAGAGGG-GGATCGGGTCGATCCCCG-CTTG
* * * * * *
17192390 CGCATTCTACCTCTTCGATCGACTGAGCGCCCGCACATTTGTTTCGTGGGTTGGCTTAGGCATAC
64 CGCATTCTGCCTCTT-GGTCGGCTGAGTGCCCGCAC-GTCGTTTCGTGGGTTGGCTTAGGCATAC
*
17192455 AGAGTTCATTCCATGTCTAAGC
127 GGAGTTCATTCCATGTCTAAGC
17192477 AAACAGAGTT
Statistics
Matches: 246, Mismatches: 49, Indels: 27
0.76 0.15 0.08
Matches are distributed among these distances:
157 15 0.06
158 125 0.51
159 105 0.43
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GACCGAGGGTTGCGGCAGCCAGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGCTTGCG
CATTCTGCCTCTTGGTCGGCTGAGTGCCCGCACGTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCAGACCA
Found at i:17192587 original size:11 final size:11
Alignment explanation
Indices: 17192571--17192603 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
17192561 CCTGAGGCAC
17192571 CATCGTCGGAG
1 CATCGTCGGAG
17192582 CATCGTCGGAG
1 CATCGTCGGAG
17192593 CATCGTCGGAG
1 CATCGTCGGAG
17192604 AGCCTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17198364 original size:155 final size:154
Alignment explanation
Indices: 17197876--17198366 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 154
17197866 AAGGATATAA
* * * * * *
17197876 AGTTCATTCCCAGTCTAACATCAGACCAGATCAAGGGTTACGGTAGCAGGATCGGTAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCA-ATCAGATCAAGGGTTATGGCAGCAGGATCGATAGCACGTA-
* * * *
17197941 GGGGGACCGAG-CTGATCCCCGGCTTGCGCATTCTGCATCTTCGGTCGGTTGAGCGCTCGCACAC
64 GGGGGACCGAGTC-GAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCG-ACGC
* * *
17198005 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
126 TCGTTTCATGGGTTGGCTTAGGCATACGG
* ** * ** * *
17198034 AGTTCATT-CCATGTCAAAGCCCCAGTTGGACCGAGGGTTATGGCAGC-GAGA-CTGATAGCACG
1 AGTTCATTCCCA-GTCTAAG-ATCAATCAGATCAAGGGTTATGGCAGCAG-GATC-GATAGCACG
* * * * * *
17198096 TAGAGGGGGACC-AGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCTGCTCAACGCTCGA
62 T--AGGGGGACCGA-GTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGA
* *
17198160 TTGCTCGTTTCATGGGTTGACTTAGGCATACGG
123 -CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
*
17198193 AGTTCATTCCCAGTCTAAGATCGAATCAGATCAAGGGTTGTGGCAGCAGGATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATC-AATCAGATCAAGGGTTATGGCAGCAGGATCGATAGCACGTAG
* *
17198258 GGGGACCGAGTCGATACTCGGC-TGCGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGTACGCTC
65 GGGGACCGAGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCG-ACGCTC
17198322 G-TTCATGGGTTGGCTTAGGCATACGG
128 GTTTCATGGGTTGGCTTAGGCATACGG
17198348 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
17198367 CATACGAAGT
Statistics
Matches: 267, Mismatches: 48, Indels: 39
0.75 0.14 0.11
Matches are distributed among these distances:
154 3 0.01
155 39 0.15
156 34 0.13
157 23 0.09
158 47 0.18
159 114 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
AGTTCATTCCCAGTCTAAGATCAATCAGATCAAGGGTTATGGCAGCAGGATCGATAGCACGTAGG
GGGACCGAGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGACGCTCGTT
TCATGGGTTGGCTTAGGCATACGG
Found at i:17198371 original size:26 final size:26
Alignment explanation
Indices: 17198340--17198392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17198330 GTTGGCTTAG
*
17198340 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17198366 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17198392 G
1 G
17198393 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17199085 original size:26 final size:26
Alignment explanation
Indices: 17199051--17199101 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17199041 TGGCTTAGGC
*
17199051 ATACTGAGTTCATTCC-ATGTCTAAGA
1 ATACGGAGTTCATTCCTA-GTCTAAGA
17199077 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
17199102 GTCAGATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGA
Found at i:17199934 original size:26 final size:26
Alignment explanation
Indices: 17199885--17199937 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17199875 GTTGGCTTAG
* * **
17199885 GCATACAGAGTTCATTTCTTGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
17199911 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
17199937 G
1 G
17199938 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:17200296 original size:26 final size:26
Alignment explanation
Indices: 17200266--17200318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17200256 GTTGACTTAG
17200266 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17200292 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17200318 G
1 G
17200319 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17200758 original size:157 final size:157
Alignment explanation
Indices: 17200358--17200791 Score: 462
Period size: 157 Copynumber: 2.8 Consensus size: 157
17200348 GGATCGATAG
** *
17200358 CACGCAGGGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTTGGCTAAGCGT--
1 CACGCAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTTGGCTAAGC-TCC
* * *
17200421 CGCATGC-CTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGCTG
64 CGCATGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACTG
** * * *
17200485 GACTGAGCGTTGTGGTAGCAGGACCAGCAG
128 GACTGAGCGTTGTGACAGCAAGACCAACAA
* * * *** * *
17200515 CACGCAGAGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
1 CACGCAG-GGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCTCC
** * * ***
17200580 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATTGAACTGG
64 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACTGG
* *
17200644 ACTGAGGGTTGTGACAGCAAGATCAACAA
129 ACTGAGCGTTGTGACAGCAAGACCAACAA
** * * * *
17200673 CACGTTGGGGGGATCGGGCCGGTCCCCAGCTTGCACATTCTGCCTCTTCGGTTGGCTGAGCTCCC
1 CACGCAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCTCCC
* *
17200738 ACATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17200792 CATATGGAGT
Statistics
Matches: 223, Mismatches: 47, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
157 93 0.42
158 89 0.40
159 40 0.18
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CACGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTTGGCTAAGCTCCCG
CATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACTGGAC
TGAGCGTTGTGACAGCAAGACCAACAA
Found at i:17200795 original size:26 final size:26
Alignment explanation
Indices: 17200765--17200817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17200755 GTTGGCTTAG
17200765 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17200791 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17200817 G
1 G
17200818 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17202026 original size:26 final size:26
Alignment explanation
Indices: 17201974--17202026 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17201964 GTTGGCTTAG
* *
17201974 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATATCTAA
17202000 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17202026 G
1 G
17202027 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17202373 original size:25 final size:26
Alignment explanation
Indices: 17202342--17202393 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17202332 GTGGACTTAG
17202342 GCATATGGAGTTCATCCT-AGTCTAA
1 GCATATGGAGTTCATCCTCAGTCTAA
*
17202367 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATCCTCAGTCTAA
17202393 G
1 G
17202394 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATCCTCAGTCTAA
Found at i:17203594 original size:26 final size:26
Alignment explanation
Indices: 17203565--17203615 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17203555 GTTGACGTAG
* *
17203565 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGACTTTATCCCCAATCTAA
* *
17203591 GCATACGGACTTTATTCCCAATCTA
1 GCATACAGACTTTATCCCCAATCTA
17203616 TGATAAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATACAGACTTTATCCCCAATCTAA
Found at i:17203947 original size:159 final size:158
Alignment explanation
Indices: 17203784--17204081 Score: 373
Period size: 159 Copynumber: 1.9 Consensus size: 158
17203774 AGCCCCAGCC
* * * * **
17203784 GGACCGAGGGTTGTGGCAGTAGGACCGACAGCACACACAGGAGGACCGGGCCGATCCTGA-CATG
1 GGACCGAGGGTTGCGACAGCAGGACCGACAGCACACACAGG-GGACCAGGCCGATCCCCAGCATG
* * * * *
17203848 CGCATTATGCTTCTCTGATCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGGTTGACTTAGGCATA
65 CGCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGT-GGGTTGACTTAGGCATA
17203913 CGGAGTTCATTACTAGTCTAAGATTGGATT
129 CGGAGTTCATTACTAGTCTAAGATTGGATT
* * * * * *
17203943 GGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGC
1 GGACCGAGGGTTGCGACAGCAGGACCGACAGCACACACAGGGGACCAGGCCGATCCCCAGCATGC
* * * * *
17204008 GCATTTTACCTCTCCGACCGGCTGAGCTCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
66 GCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
17204073 GAGTTCATT
131 GAGTTCATT
17204082 CCATGTCTAA
Statistics
Matches: 116, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 41 0.35
159 75 0.65
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGCGACAGCAGGACCGACAGCACACACAGGGGACCAGGCCGATCCCCAGCATGC
GCATTATACCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTACTAGTCTAAGATTGGATT
Found at i:17204095 original size:26 final size:26
Alignment explanation
Indices: 17204066--17204118 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17204056 GTTGGCTTAG
17204066 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17204092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17204118 G
1 G
17204119 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17204217 original size:184 final size:185
Alignment explanation
Indices: 17203908--17204278 Score: 530
Period size: 184 Copynumber: 2.0 Consensus size: 185
17203898 GTTGACTTAG
* ** *** *
17203908 GCATACGGAGTTCATTACTAGTCTAAGATTGGATTGGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* *
17203973 GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTTTACCTCTCCGACCGGCTGAGCTCC
66 GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
*
17204038 CGCATG-CTCGTTTCGTGGGTTGGCTTAGGCAT-ACGGAGTTCATTCCATGTCTAA
131 CCCATGTC-CGTTTCGTGGGTTGGCTTAGGCATAACGGAGTTCATTCCATGTCTAA
* *
17204092 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
17204157 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
* * *
17204222 CCCATGTCCTTTTCGTGGGTTGGCTTGGGCATAAGGGAGTTCATTCCATGTCTAA
131 CCCATGTCCGTTTCGTGGGTTGGCTTAGGCATAACGGAGTTCATTCCATGTCTAA
17204277 GC
1 GC
17204279 CCTAGCCAGA
Statistics
Matches: 164, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
184 140 0.85
185 24 0.15
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
CCCATGTCCGTTTCGTGGGTTGGCTTAGGCATAACGGAGTTCATTCCATGTCTAA
Found at i:17204594 original size:159 final size:155
Alignment explanation
Indices: 17204092--17204595 Score: 435
Period size: 159 Copynumber: 3.2 Consensus size: 155
17204082 CCATGTCTAA
* *
17204092 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGCT-GAGGGTTGCGGCAGCAGGATCGAC
*
17204156 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
64 AGCACGCAGAGGGGGATCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG-A
* * * *
17204220 CCCCCATGTCCTTTTCGTGGGTTGGCTTGG
127 CCCACACGTCATTTT-GTGGGTTGGCTTAG
* ** * * * * * *
17204250 GCATAAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTA
1 GCAT-ACGGAGTTCATTCCCA-GTCTAAGATC-AGACAGGCTGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
17204313 GCAGCACGTAGAGGGGGATCGGG-CTGATCCCTGGCTTGTGCATTATGCCTTTTCGGTTGGATCA
63 -CAGCACGCAGAGGGGGATCGGGTC-GATCCC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * *
17204377 GAGCTCGCACGCTCATTTCGTGGGTTGACTTAG
125 GA-CCCACACG-TCATTTTGTGGGTTGGCTTAG
* * * ** *
17204410 GCATACAGAGTTAATTCCCAATCTAAGATCAGATTGGGCTGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGCTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
17204475 GCACACAGAGGGGGACCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCAGCTGAGTAC
65 GCACGCAGAGGGGGATCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG-AC
17204540 CCACACGTTCATTTTGTGGGTTGGCTTAG
128 CCACACG-TCATTTTGTGGGTTGGCTTAG
17204569 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17204596 CATACGGAGT
Statistics
Matches: 263, Mismatches: 66, Indels: 33
0.73 0.18 0.09
Matches are distributed among these distances:
158 14 0.05
159 174 0.66
160 70 0.27
161 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGCTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGACCCA
CACGTCATTTTGTGGGTTGGCTTAG
Found at i:17204598 original size:503 final size:500
Alignment explanation
Indices: 17203547--17204830 Score: 1425
Period size: 503 Copynumber: 2.5 Consensus size: 500
17203537 TGCACACTCG
* * * * * * *
17203547 TTTCGTGGGTTGACGTAGGCATACAGAGTTTATCCCCA-GTCTAAGCATACGGACTTTATTCCCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * ** * **
17203611 ATCTATGATAAGACCGGAGCAAGGGTTGCGGCAGCAGGATCGGTAGCACACAGGGGGGACTGGAC
65 GTCTAAGAT-AGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGT
* * ** *
17203676 CGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCAGCTGAGTACCCGCACGTCCGTTTCACT-GG
129 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGTCCGTTTC-GTGGG
* *
17203740 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTA
193 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCA
*
17203805 GGAC-CGACAGCACACACAGGAGGACCGGGCCGATCCTGACATGCGCATTATGCTTCTCTGATCG
258 GGACTAG-CAGCACACACAGGAGGACCGGGCCGATCCTGACATGCGCATTATGCTTCTCTGATCG
* * ** * * * *
17203869 GCTCAGCGCCCGCACGCTTGTTTCGTGGGGTTGACTTAGGCATACGGAGTTCATTACTAGTCTAA
322 GATCAGAGCCCGCACGCTCATTTCGTGGGGTTGACTTAGGCATACAGAGTTAATTACCAATCTAA
** * * *
17203934 GATTGGATTGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGACCAGGTCGATCC
387 GATCAGATTGGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGACCAGGTCGATCC
* * * * * *
17203999 CCAGCTTGCGCATTTTACCTCTCCGACCGGCTGAGCTCCCGCATGCTCG
452 CCAGCTTACGCATTCTACCTCTCCGACCAGCTGAGCTCCCACACGCTCA
17204048 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
17204113 TCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA-TCGGGT
66 TCTAAGAT-AGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACT-GGGT
* * * *
17204177 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCCCATGTCCTTTTCGTGGGT
129 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGTCCGTTTCGTGGGT
* * *
17204242 TGGCTTGGGCATAAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCG
194 TGGCTTAGGCAT-AGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCA
** * * * * * * * * * *
17204307 GGACTAGCAGCACGTAGAGGGGGATCGGGCTGATCCCTGGCTTGTGCATTATGCCTTTTC-GGTT
258 GGACTAGCAGCACACACAGGAGGACCGGGCCGAT-CCTGACATGCGCATTATG-CTTCTCTGATC
* *
17204371 GGATCAGAGCTCGCACGCTCATTTCGT-GGGTTGACTTAGGCATACAGAGTTAATTCCCAATCTA
321 GGATCAGAGCCCGCACGCTCATTTCGTGGGGTTGACTTAGGCATACAGAGTTAATTACCAATCTA
* * * *
17204435 AGATCAGATTGGGCTGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGTCGAT
386 AGATCAGATTGGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGA-GGGGACCAGGTCGAT
* * *
17204500 CCTC-GACTTACGCATTCTGCCTCTCCGACCAGCTGAG-TACCCACACGTTCA
450 CCCCAG-CTTACGCATTCTACCTCTCCGACCAGCTGAGCT-CCCACACGCTCA
*
17204551 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * *
17204616 TCTAAGATAGGATCAGATTGAAGGTTGCGATAGTAGGACCAGCAGCAGGATTGGTAGCATGTAAG
66 TCTAAGATA-GACCAGATCGAGGGTTGCGACAGCAGGATC-G-A-CAGCA-----CGCA-G---G
* * * * *
17204681 GGGGACTGGGTCGATCCCTGGCTCGCGCATTTTGCCTCTCCAATCAGTTGAGCGCCCGCACG-CT
118 GGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGTC-
* * * * *
17204745 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTGTAAGCCCTAGTCGGACCAAGGG
182 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGG
* *
17204810 TTGTGCCAGCAGGACTGGCAG
247 TTGTGGCAGCAGGACTAGCAG
17204831 TGGGGTCTGC
Statistics
Matches: 656, Mismatches: 102, Indels: 37
0.83 0.13 0.05
Matches are distributed among these distances:
500 5 0.01
501 169 0.26
502 149 0.23
503 188 0.29
504 6 0.01
505 1 0.00
506 4 0.01
511 3 0.00
512 1 0.00
514 54 0.08
515 75 0.11
516 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (500 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGTCG
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGTCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGA
CTAGCAGCACACACAGGAGGACCGGGCCGATCCTGACATGCGCATTATGCTTCTCTGATCGGATC
AGAGCCCGCACGCTCATTTCGTGGGGTTGACTTAGGCATACAGAGTTAATTACCAATCTAAGATC
AGATTGGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGACCAGGTCGATCCCCAG
CTTACGCATTCTACCTCTCCGACCAGCTGAGCTCCCACACGCTCA
Found at i:17204605 original size:26 final size:26
Alignment explanation
Indices: 17204569--17204621 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17204559 GTTGGCTTAG
17204569 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17204595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17204621 G
1 G
17204622 ATAGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17204986 original size:26 final size:26
Alignment explanation
Indices: 17204949--17205001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17204939 GTTGACTTAG
*
17204949 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
17204975 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17205001 G
1 G
17205002 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17205324 original size:159 final size:158
Alignment explanation
Indices: 17205026--17205465 Score: 490
Period size: 159 Copynumber: 2.8 Consensus size: 158
17205016 CAGGATCGGT
* * * * * * *
17205026 AGCACGTATGGGGGACCGGGTCGAT-CCCTAGCTTGTGCATTCTGCCACTCTGGTCGACTGAGTG
1 AGCACGCAGGGGGGATCGGGCCGATCCCCT-GCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCG
* * * *
17205090 CCCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCACCAGCT
65 CCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAT
* * *
17205155 AGACCGAGGGTTGTGGCAGCGGGACCGAC
130 AGACCGAGGGTTGCGGCAGCAGGACCAAC
* * * * *
17205184 AGCACGCAGAGGGGGATCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTTTGGTTGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCCTGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCG
* * * * ***
17205249 CCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGA
65 CCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* *
17205312 TCAGACCGAGGGTTGCGGTAGCAGGATCAAC
129 T-AGACCGAGGGTTGCGGCAGCAGGACCAAC
* * * * * * *
17205343 AGTACGCAGGGAGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCAC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCTGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGC
**
17205408 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17205466 TACGGAGTTC
Statistics
Matches: 230, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 120 0.52
160 6 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCTGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGC
CCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATA
GACCGAGGGTTGCGGCAGCAGGACCAAC
Found at i:17205487 original size:26 final size:26
Alignment explanation
Indices: 17205437--17205489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17205427 GTTGGCTTAG
*
17205437 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17205463 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17205489 G
1 G
17205490 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17212122 original size:26 final size:26
Alignment explanation
Indices: 17212086--17212138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212076 GTTGACTTAG
17212086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17212112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17212138 G
1 G
17212139 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17212422 original size:153 final size:151
Alignment explanation
Indices: 17212112--17212584 Score: 530
Period size: 150 Copynumber: 3.2 Consensus size: 151
17212102 CCCAGTCTAA
* *
17212112 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-G--GACCGAGGGTTGCACAGCAGGATCGACAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACGACCGAGGGTTGCACAGCAGGACCGACAG
* * * * *
17212172 CACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCGGCCGGTTGAGGCCCGC
65 CAC-AAAGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCT-GGTCGGCTGAGGCCCGC
17212237 A--C-CGTTTCGTGGGTTGGCTTAG
127 ACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
17212259 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCG-TA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGAC-GACCGAGGGTTG-CACAGCAGGACCGACA
* *
17212323 GCACAAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTCTGGTCGGCTCAGTGCCCGCA
64 GCACAAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTGGTCGGCTGAG-GCCCGCA
*
17212388 CGCTCGTTTCGTGGGTTGACTTAG
128 CGCTCGTTTCGTGGGTTGGCTTAG
* * *
17212412 GCATACGGAGTTCATTCCA-GTCTAAG-ATCGGACGACCGAGGGTTGCACAGCAGGATCGACAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGACCGAGGGTTGCACAGCAGGACCGACAGC
** * * *
17212475 ACGCAGGGGGATCGGGCGAT-CCCGGCTTGCGCATTCTGCCTCT-CTCGGCTGAGCGCCCG-ACG
66 ACAAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTGGTCGGCTGAG-GCCCGCACG
17212537 CT--TTT-GTGGGTTGGCTTAG
130 CTCGTTTCGTGGGTTGGCTTAG
17212556 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
17212585 TACGGAGTTC
Statistics
Matches: 277, Mismatches: 35, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
144 32 0.12
145 10 0.04
146 4 0.01
147 27 0.10
148 14 0.05
149 40 0.14
150 67 0.24
151 12 0.04
152 25 0.09
153 46 0.17
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.21
Consensus pattern (151 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGACCGAGGGTTGCACAGCAGGACCGACAGC
ACAAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTGGTCGGCTGAGGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAG
Found at i:17212592 original size:26 final size:26
Alignment explanation
Indices: 17212556--17212608 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212546 GTTGGCTTAG
17212556 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17212582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17212608 G
1 G
17212609 ATCGGACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17212948 original size:26 final size:26
Alignment explanation
Indices: 17212918--17212970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17212908 GTTGACTTAG
17212918 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17212944 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17212970 G
1 G
17212971 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17213276 original size:26 final size:26
Alignment explanation
Indices: 17213240--17213292 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17213230 GTTGGCTTAG
*
17213240 GCATATGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
17213266 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
17213292 G
1 G
17213293 ATCCCCAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:17213562 original size:26 final size:26
Alignment explanation
Indices: 17213526--17213578 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17213516 GTTGGCTTAG
*
17213526 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17213552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17213578 G
1 G
17213579 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17214400 original size:26 final size:26
Alignment explanation
Indices: 17214371--17214423 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17214361 GTTGGCTTAG
*
17214371 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
17214397 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17214423 G
1 G
17214424 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17215324 original size:355 final size:355
Alignment explanation
Indices: 17214473--17215331 Score: 996
Period size: 355 Copynumber: 2.4 Consensus size: 355
17214463 CAGGATCGAT
** * * * * *
17214473 AGCACGCAGGGTGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTG
1 AGCACGCAGGG-GGGACTAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCG
* * * *
17214538 CCCGCACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAATCCCCA-AC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGAC
* * * * * * *
17214602 CAGATCGAGGGTTGTGGCAGCAGGATCGACAACGGGATCAGCAGCATGTAGAGAGGGACCGGGCT
130 GA-ACCGAGGGTTGTGGCAGCAGGACCGACAACGAGATCAGCAACATGCAAAGAGGGACCGGGCT
* * * *
17214667 GATCCCTGGCTTACGCATTATGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTT
194 GATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCACCCGCACACTCGATTCATGGGTT
17214732 GACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGA
259 GACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGA
* * * *
17214797 TCCAGACTGAGGGCTGTGGCAGCAAGATCGAC
324 TCCAGACTAAGGGCTGCGACAGCAAGATAGAC
* * * * *
17214829 AGCACGTAGGGGGGACTAGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCAGCTGAGCGT
1 AGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGC
* * * *
17214894 CCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGCCG
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGACG
* * * *
17214959 GACTGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATC-GACAACATGCAAAG-GAGGACCGGGCT
131 AACCGAGGGTTGTGGCAGCAGGACCGACAACGAGATCAG-CAACATGCAAAGAG-GGACCGGGCT
* *** * *
17215022 GATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCTGAGCGCTCGCACACTCGATTCATGGGTT
194 GATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCACCCGCACACTCGATTCATGGGTT
* * * * *
17215087 GACTTAGGCGTAC-GAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
259 GACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCGAAGATC-G
* * ** *
17215151 A-CCGGA-TCAAGGGTTGCGATGGCAGGATTAG-C
323 ATCCAGACT-AAGGGCTGCGACAGCAAGA-TAGAC
* * *
17215183 AGCATGCAGGGGGGA-TCAGGGCTAGTCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGC
1 AGCACGCAGGGGGGACT-AGGCCGA-TCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGC
* * * * * *
17215247 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGT
64 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGA
*
17215312 CGAACCGAGGGTTATGGCAG
129 CGAACCGAGGGTTGTGGCAG
17215332 TGGGACCTGC
Statistics
Matches: 420, Mismatches: 75, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
353 2 0.00
354 82 0.20
355 325 0.77
356 11 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (355 bp):
AGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGACG
AACCGAGGGTTGTGGCAGCAGGACCGACAACGAGATCAGCAACATGCAAAGAGGGACCGGGCTGA
TCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCACCCGCACACTCGATTCATGGGTTGA
CTTAGGCATACAAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGATC
CAGACTAAGGGCTGCGACAGCAAGATAGAC
Found at i:17215623 original size:26 final size:26
Alignment explanation
Indices: 17215594--17215646 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17215584 GTTGGCTTAG
17215594 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
**
17215620 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17215646 G
1 G
17215647 ATCGGGTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17216171 original size:868 final size:861
Alignment explanation
Indices: 17214656--17217050 Score: 2509
Period size: 868 Copynumber: 2.8 Consensus size: 861
17214646 CATGTAGAGA
* * * *
17214656 GGGACCGGGCTGATCCCTGGCTT-ACGCATTATGCCTCTCCGGCCAGCTGAGCACCCGCACGCTC
1 GGGACCGGGCTGATCCCTAGCTTGA-GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTC
* * * * * *
17214720 GTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCC
65 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATT-CC
* * * *
17214784 AGTCGAAGATCGATCCAGACTGA-GG--GC-T-GT-GG--CAGC-A-A-GATCGACAGCACGTAG
128 AGTCTAAGATCGAT-C-GAATGAGGGTTGCGTAGTAGGACCAGCAACAGGATCGGCAGCACGCAG
* * * * ** *
17214838 GGGGGACTAGGCCGATCCCCGACTTGCGCATTTTGCCTCTCC-GACCAGCTGAGCGTCCGCACGT
191 GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGA-CTGAGCACCCGCACGC
* *
17214902 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGCCGGACTGAGG
255 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGG
* * * * * *
17214967 GTTGTGGCAGCAGGACCGGCAGCGAGATCGACAACATGCAAAGGAGGACCGGGCTGATCCCCGAC
320 GTTGTGGCAGCAGGA-CGGCAGCGGGATCGACAGCATGCAGAGGGGGACTGGGCTGATCCCCAAC
* * * * *
17215032 TTGCGCATTATGCCTCTCCGGTTGGCTGAGCGCTCGCACACTCGA-TTCATGGGTTGACTTAGGC
384 TTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC-ATTTTATGGGTTGACTTAGGC
* * * *
17215096 -GTACG-AGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGAT
448 AG-ACGAAGTTCAT-CCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCCAGAC
* * **
17215158 CAAGGGTTGCGA-TGGCAGGATTA-GCAGCATGCAGGGGGGATCAGGGCT-AGTCCCCGGCTTGC
510 CAAGGGTTGCGACT-GCAGGA-TAGGCAGCATGCA-GGGGGA-CCGGGCTGA-TCCTCGGCTTTT
* * * * *
17215220 GCATTTTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCGTAGG
570 GCATTCTGCCTCTCCGGCTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* ***
17215285 GAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTATGGCAGTGGGACCTG-CAGCACA
635 GAGTTCATTCCATGTCTAAGCCCCAGCT-GAACCAAGGGTTATGGCAGCAAGACC-GACAGCACA
* *
17215348 CAAAGGGGGATC-GAGTCGAT-CCTCGACTTACGCATTATGCCTCTTCGATCGGCTCAG-TGCCT
698 CAAAGGGGGACCTG-GCCGATCCCT-GACTTACGCATTATGCCTCTTCGATCGGCTCAGCT-CCT
* * * * * * *
17215410 GCACGCTCGTTTCGTGGGTTGACTTATGTATACGGAGTTCATTCCC-AAGTAAGATCGGATCGGG
760 GCACACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCTAACTAAGATCGGACCAGA
* * *
17215474 CCGAAGGTGGC-GGCAGCAGGATTGACAGCACGTAGGG
825 CCGAAGGT-GCTGACAGCAGGATTGACAGCACGCAAGG
* * * *
17215511 GGGACCGAGCCGATCCCTAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCATCCGCATGCTCG
1 GGGACCGGGCTGATCCCTAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCG
17215576 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAG
66 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCC-AG
* * * **
17215641 TCTAAGATCGGGTCGAATAAAGGGTTGCAGTAGTAGGACCAGCAACAGGATCGGTAGCACGGGGG
130 TCTAAGATC-GATCGAAT-GAGGGTTGC-GTAGTAGGACCAGCAACAGGATCGGCAGCAC-GCAG
* *
17215706 GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACGGAGCACCCGTACGCT
191 GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCT
**
17215771 CGTTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGG
256 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGG
* * * * * *
17215836 TTGTGGCAGCAGGATCGGTAGCGGGATCGACAGCACGTAGAGGGGGACTGGACGGCTCCCCAACT
321 TTGTGGCAGCAGGA-CGGCAGCGGGATCGACAGCATGCAGAGGGGGACTGGGCTGATCCCCAACT
17215901 TGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCAG
385 TGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCAG
17215966 ACGAAGTTCATCGCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCAGACCAAG
450 ACGAAGTTCATC-CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCAGACCAAG
* * * **
17216031 GGTTGCGACTGCAGGATAGGTAGCACGTAGGAGTCACCGGGCTGATCCTCGGCTTTTGCATTCTG
514 GGTTGCGACTGCAGGATAGGCAGCATGCAGG-GGGACCGGGCTGATCCTCGGCTTTTGCATTCTG
* * * * *
17216096 CCTCTCTGACTGGTTGAGCGCCCACACGCCCGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCAT
578 CCTCTCCGGCTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * *** *
17216161 TCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAAGACCGACAGCATGTAGAGGGGGA
643 TCCATGTCTAAGCCCCAGCTGAACCAAGGGTTATGGCAGCAAGACCGACAGCACACAAAGGGGGA
* ** * *
17216226 CCTGGCCGATCCCTGTCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCTCCTGTACACTCATTTC
708 CCTGGCCGATCCCTGACTTACGCATTATGCCTCTTCGATCGGCTCAGCTCCTGCACACTCATTTC
* * * * *
17216291 GTGGGTTGACTTATGCATACGGAGTTCATTCCCTATCTAAGATTGGGCCAGACCGAGGGTTCTGA
773 GTGGGTTGACTTATGCATACGGAGTTCATTCCCTAACTAAGATCGGACCAGACCGAAGGTGCTGA
* * * *
17216356 TAGTAGGATTGATAGCATGCAAGG
838 CAGCAGGATTGACAGCACGCAAGG
* * * * *
17216380 GGGACCGGGCTAATCCC-CGACTTGTGCATTCTGTCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
1 GGGACCGGGCTGATCCCTAG-CTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTC
* * *
17216444 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATATGGAGTTCATTTCCA
65 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCA-TTCCA
* * * * * * *
17216509 GTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAGGAAAC-GCAGCACGCA
129 GTCTAAGATC-GATCGAAT-GAGGGTTGCG-TAGTAGGACCAGCAACAGG-ATCGGCAGCACGCA
* * * * * ** * * * **
17216573 GGAGGGACCGGGCCAATCCCTGGCTTATGCATTCTACCTCTTCGATCGGTTGAGCACCCGCACGC
190 GGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGC
* * * *
17216638 TCGTTTCTTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA-G
255 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGG
* * **
17216702 GTTGTGGTAGCAGGACTGACAGCGGGATCGGTAGCATGCAGAGGGGGA-TCGGGCTGATCCCCAG
320 GTTGTGGCAGCAGGAC-GGCAGCGGGATCGACAGCATGCAGAGGGGGACT-GGGCTGATCCCCA-
* * * * * * * *
17216766 TTTGCGTATTATGCCTTTCCAATCGGCCTCTCCGATCGGTTGAGCGCCTGTACGCTCGTTTTATG
382 ---AC---TTGTG-CATT---AT--GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTTATG
* * *
17216831 GGTTGACTTAGGCATACAAAGCTCATCCCAAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
435 GGTTGACTTAGGCAGACGAAGTTCATCCC-AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
17216896 TCG-TTCAGACCGAGGGTTACGACAGTAGGATCGACAGCATGCAGGGGGACCGAGCCGATCCTCG
499 TCGATCCAGACCAAGGGTTGCGACTGCAGGATAGGCAGCATGCAGGGGGACCGGGCTGATCCTCG
* ** * *
17216960 ACTTTTGCATTCTGCCTCTCCGGCTGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTATG
564 GCTTTTGCATTCTGCCTCTCCGGCTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
**
17217025 CATATAGAGTTCATTCCCA-GTCTAAG
629 CATAGGGAGTTCATT-CCATGTCTAAG
17217051 ATCTAACCGG
Statistics
Matches: 1280, Mismatches: 204, Indels: 89
0.81 0.13 0.06
Matches are distributed among these distances:
854 8 0.01
855 117 0.09
856 5 0.00
858 2 0.00
860 1 0.00
861 2 0.00
862 2 0.00
864 4 0.00
865 1 0.00
866 3 0.00
867 62 0.05
868 555 0.43
869 277 0.22
870 7 0.01
871 1 0.00
874 4 0.00
875 3 0.00
878 92 0.07
879 37 0.03
880 97 0.08
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (861 bp):
GGGACCGGGCTGATCCCTAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCAGT
CTAAGATCGATCGAATGAGGGTTGCGTAGTAGGACCAGCAACAGGATCGGCAGCACGCAGGGGGG
ACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTT
CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTG
GCAGCAGGACGGCAGCGGGATCGACAGCATGCAGAGGGGGACTGGGCTGATCCCCAACTTGTGCA
TTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCAGACGAAG
TTCATCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCAGACCAAGGGTTGCG
ACTGCAGGATAGGCAGCATGCAGGGGGACCGGGCTGATCCTCGGCTTTTGCATTCTGCCTCTCCG
GCTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCTGAACCAAGGGTTATGGCAGCAAGACCGACAGCACACAAAGGGGGACCTGGCCG
ATCCCTGACTTACGCATTATGCCTCTTCGATCGGCTCAGCTCCTGCACACTCATTTCGTGGGTTG
ACTTATGCATACGGAGTTCATTCCCTAACTAAGATCGGACCAGACCGAAGGTGCTGACAGCAGGA
TTGACAGCACGCAAGG
Found at i:17216499 original size:26 final size:26
Alignment explanation
Indices: 17216463--17216515 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17216453 GTTGGCTTAG
*
17216463 GCATACGGAGTTTA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
17216489 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
17216515 G
1 G
17216516 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:17217154 original size:158 final size:156
Alignment explanation
Indices: 17216868--17217208 Score: 377
Period size: 158 Copynumber: 2.2 Consensus size: 156
17216858 CCAAATCTAA
* *
17216868 GCATACGGAGTTCATTCCCAGTCTAAGATCGTTCAGACCGAGGGTTACGACAGTAGGATCGACAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGTCCAGACCGAGGGTTACGACAGTAGGATCGACAG
* ** * *
17216933 CATGCAGGGGGACCGAGCCGATCCTCGACTTTTGCATTCTGCCTCTCCGGCTGGTTGAGCGCCCG
66 CACGCAGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCG
* * *
17216998 CACGTTCGTTTCGTGGGTT-GACTTAT
131 CACGCTCGTTTCGTAGGTTAG-CTTAG
* * * ** ** *
17217024 GCATATAGAGTTCATTCCCAGTCTAAGATC-TAACCGGACTGAGGGTTGTGGTAGTAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGT--CCAGACCGAGGGTTACGACAGTAGGATCGAC
* * * *
17217088 AGCACGCATGGGGGACCGGGCTGATACC-CGGCTTGCGCATTCTACCTCTCTGG-TCGGCTGAGC
64 AGCACGCA-GGGGGACCGAGCCGAT-CCTCGACTTGCGCATTCTACCTCTCCGGCT-GGCTGAGC
17217151 GCCCGCACGCTCGTTTCGTAGGTTAGCTTAG
126 GCCCGCACGCTCGTTTCGTAGGTTAGCTTAG
*
17217182 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
17217209 CATACGGAGT
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
155 1 0.01
156 28 0.18
157 34 0.22
158 88 0.57
159 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGTCCAGACCGAGGGTTACGACAGTAGGATCGACAG
CACGCAGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCG
CACGCTCGTTTCGTAGGTTAGCTTAG
Found at i:17217218 original size:26 final size:26
Alignment explanation
Indices: 17217182--17217234 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217172 GTTAGCTTAG
17217182 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
17217208 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17217234 G
1 G
17217235 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17217933 original size:26 final size:26
Alignment explanation
Indices: 17217904--17217956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17217894 GTTGACTTAG
17217904 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17217930 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17217956 G
1 G
17217957 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17220448 original size:26 final size:26
Alignment explanation
Indices: 17220412--17220461 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17220402 TACTTAGGCA
17220412 TACGGAGTTCA-TCCCTAGTCTAAGCC
1 TACGGAGTTCATTCCC-AGTCTAAGCC
17220438 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17220462 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:17220745 original size:159 final size:158
Alignment explanation
Indices: 17220575--17221156 Score: 421
Period size: 159 Copynumber: 3.7 Consensus size: 158
17220565 CACAAGCCCG
*
17220575 TTTCGTGGGTTGGCTTAGGCATCAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATCAGGAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTT
** * * *
17220640 GTGCCAGCGGGATCGATAGCATGCAGAGG-GGGACCGAGCTGAT-CCTCGGCTTGTGCATTATGC
65 GTGCCAGCAAGATCGACAGCACGCAG-GGTGGGACCGAGCCGATCCCT-GGCTTGTGCATTATGC
* * * *** * *
17220703 CTCTCTAGTCGGCTCAGTGCCCGAATGGTCA
128 CCCTCCAGTCGACTCACCACCCGAACGCTCA
* * ** * * *
17220734 TTTCATGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAAGG
1 TTTCGTGGGTTGGCTTAGGCAT-CAGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAGGG
* * * * *
17220797 TTGCGGCAGCAAGATCGACAGCACGTAGGGTGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGC
63 TTGTGCCAGCAAGATCGACAGCACGCAGGGTGGGACCGAGCCGATCCCTGGCTTGTGCATTATGC
* * *
17220862 CCCTCCAGTCGACTGACCACCCGCACGCTCG
128 CCCTCCAGTCGACTCACCACCCGAACGCTCA
*
17220893 TTTCGTGGGTTGGCTTAGGCAT-ATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGTGT
1 TTTCGTGGGTTGGCTTAGGCATCA-GGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGT
* * * * * ** * * * * *
17220957 TGTGGCTGTAGGATCGATAGTTCACAGAGG-GGGATCGGGTCGATCCCTGGCTTGCGCATTATGC
64 TGTGCCAGCAAGATCGACAGCACGCAG-GGTGGGACCGAGCCGATCCCTGGCTTGTGCATTATGC
* * * * * * * * *
17221021 CACTTCGGTTGGCTCAGCGCCCGCACACTCA
128 CCCTCCAGTCGACTCACCACCCGAACGCTCA
* * * ** * *
17221052 GTTT-GTGGGTTGACTTAGGGAT-ACGCAGTTCATTCC-TAGTCTAAGATCAGACCGGACTGATG
1 -TTTCGTGGGTTGGCTTAGGCATCA-GGAGTTCATTCCAT-GTCTAAGCCCAG-CCGGACCGAGG
* *
17221114 GTTGCAG-CAGCAGGATCGACAGCACGCAGGG-GGGACCGAGCCG
62 GTTG-TGCCAGCAAGATCGACAGCACGCAGGGTGGGACCGAGCCG
17221157 GTCCTCAGCT
Statistics
Matches: 328, Mismatches: 81, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 22 0.07
159 288 0.88
160 17 0.05
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATCAGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTG
TGCCAGCAAGATCGACAGCACGCAGGGTGGGACCGAGCCGATCCCTGGCTTGTGCATTATGCCCC
TCCAGTCGACTCACCACCCGAACGCTCA
Found at i:17221018 original size:318 final size:313
Alignment explanation
Indices: 17220442--17221255 Score: 928
Period size: 318 Copynumber: 2.6 Consensus size: 313
17220432 TAAGCCTACG
* * **
17220442 GAGTTCATTCCCAGTCTAAGATCAGATCGGATGGAGGGTTGCGGCAGCAGGATCGGTAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGTA
* * *
17220507 GGGGGGACC-AGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGAC-GAAGCGCCCACAA
66 GGGGGGACCGA-GCCGGTCCCTAGCTTGCGCATTCTGCCTCTCCG-TCGACTG-AGCGCCCGCAC
* *
17220570 GCCCGTTTCGTGGGTTGGCTTAGGCATCAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGA
128 GCTCGTTTCGTGGGTTGGCTTAGGCAT-AGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* *
17220635 GGGTTGTGCCAGCGGGATCGATAGCATGCAGAGGGGGACCGAGCTGATCCTCGGCTTGTGCATTA
192 GGGTTGTGCCAGCAGGATCGATAGCA-GCAGAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTA
* * ***
17220700 TGCCTC-TCTAGTCGGCTCAGTGCCCGAATGGTCA-TTTCATGGGTTGACTTAGGCATAC
256 TGCCACTTC-AGTCGGCTCAGCGCCCGAACACTCAGTTT-ATGGGTTGACTTAGGCATAC
*
17220758 AGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCGGCAGCAAGATCGACAGCACGT
1 -GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGT
* * * * *
17220823 AGGGTGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTGCCCCTCCAGTCGACTGACCACCCGCAC
65 AGGG-GGGACCGAGCCGGTCCCTAGCTTGCGCATTCTGCCTCTCC-GTCGACTGAGCGCCCGCAC
*
17220888 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
128 GCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * * * * *
17220953 GTGTTGTGGCTGTAGGATCGATAGTTCA-CAGAGGGGGATCG-GGTCGATCC-CTGGCTTGCGCA
192 GGGTTGTGCCAGCAGGATCGATAG--CAGCAGAGGGGGACCGAGCT-GATCCTC-GGCTTGCGCA
* * * * *
17221015 TTATGCCACTTCGGTTGGCTCAGCGCCCGCACACTCAGTTTGTGGGTTGACTTAGGGATAC
253 TTATGCCACTTCAGTCGGCTCAGCGCCCGAACACTCAGTTTATGGGTTGACTTAGGCATAC
* * * *
17221076 GCAGTTCATTCCTAGTCTAAGATCAGACCGGA-CTGATGGTTGCAGCAGCAGGATCGACAGCACG
1 G-AGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAAGGTTGCGGCAGCAGGATCGACAGCACG
* * * * ** * *
17221140 CAGGGGGGACCGAGCCGGT-CCTCAGCTTACGCATTATGCCTCTCTGGTCGGTTGAGTGCCTGCA
64 TAGGGGGGACCGAGCCGGTCCCT-AGCTTGCGCATTCTGCCTCTC-CGTCGACTGAGCGCCCGCA
* * *
17221204 CGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCAT-TCCATGTCTAAGC
17221256 ATACAGAGTT
Statistics
Matches: 425, Mismatches: 56, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
316 3 0.01
317 155 0.36
318 257 0.60
319 8 0.02
320 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (313 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCGGCAGCAGGATCGACAGCACGTA
GGGGGGACCGAGCCGGTCCCTAGCTTGCGCATTCTGCCTCTCCGTCGACTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGCCAGCAGGATCGATAGCAGCAGAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTATGCCA
CTTCAGTCGGCTCAGCGCCCGAACACTCAGTTTATGGGTTGACTTAGGCATAC
Found at i:17221264 original size:26 final size:26
Alignment explanation
Indices: 17221228--17221280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17221218 GTTGACTTAG
*
17221228 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17221254 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17221280 G
1 G
17221281 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17221405 original size:184 final size:184
Alignment explanation
Indices: 17221078--17221426 Score: 425
Period size: 184 Copynumber: 1.9 Consensus size: 184
17221068 AGGGATACGC
* * *
17221078 AGTTCATTCCTAGTCTAAGATCAGACCGGACTGATGGTTGCAGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACAGGACTGATGGTTGCAGCAGCAGGATCGACAGCACGCAA
* * ** * * * ** * *
17221143 GGGGGACCGAGCCGGTCCTCAGCTTACGCATTATGCCTCTCTGGTCGGTTGAGTGCCTGCACGCT
66 GGGGGACCGAGACGATCCTCAGCTTACGCATTATGCCTCTCCAGCCAGCTGAAAGCCCGCACGCC
*
17221208 CTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
131 CTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
** * *
17221262 AGTTCATTCCCAGTCTAAGATTGGACAGGATTGAAT-GTTGC-GATAGCAGGATCGACAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGACAGGACTG-ATGGTTGCAG-CAGCAGGATCGACAGCACGC
* * * *
17221325 AAGGGGGACCGGGACGATCC-CTGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAAAGCCCGCAC
64 AAGGGGGACCGAGACGATCCTC-AGCTTACGCATTATGCCTCTCCAGCCAGCTGAAAGCCCGCAC
* *
17221389 GCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
128 GCCCTTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
17221427 TCCATGTCTA
Statistics
Matches: 137, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 133 0.97
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACAGGACTGATGGTTGCAGCAGCAGGATCGACAGCACGCAA
GGGGGACCGAGACGATCCTCAGCTTACGCATTATGCCTCTCCAGCCAGCTGAAAGCCCGCACGCC
CTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
Found at i:17221737 original size:26 final size:26
Alignment explanation
Indices: 17221698--17221753 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17221688 TGGGTTGGCT
17221698 TAAGCATACAGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
**
17221724 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17221750 TAAG
1 TAAG
17221754 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17222371 original size:157 final size:154
Alignment explanation
Indices: 17221789--17222429 Score: 495
Period size: 158 Copynumber: 4.1 Consensus size: 154
17221779 AGCAGGACCA
* ** * * * * *
17221789 GCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCTCTGACTTGCGT-ATTCTGCCTC-T
1 GCAGCAGGATCGACAGCATGCA-GGGGGAATGGGCCGATCCCTGGCTTGC-TCATTCTACCTCTT
* * * * * * *
17221852 CCGATCGGCTGAGCGCCCGCGCGATCGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCCTA
64 CAG-CCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
17221917 TTCTCAGATCGACCCAGATCGAGGGTTGTG
127 GTCTAAGATCGA--CAGATCGAGGGTTGTG
* ** * * *
17221947 GCAGTAGGATCGACAGCATGCAGGGGGAACCAGGCTGAT-CGTCGGCTTG-TGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCATGCAGGGGGAA-TGGGCCGATCCCT-GGCTTGCT-CATTCTACCTCT
* * * *
17222010 TCAGCCGGCTGAGCGACCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCA
63 TCAGCCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
** * *
17222074 TGTCTAAGCCCCAGCCGGATCGAGGGTTGTG
127 -GTCTAAG-ATC-GACAGATCGAGGGTTGTG
* * * * * * * * * * *
17222105 GCAGCGGGATC-AGTAGCACGCAAAGAGGG-ATCGTGCCGATCCCTAGCTTACGCATTATTCCTT
1 GCAGCAGGATCGA-CAGCATGC--AGGGGGAAT-GGGCCGATCCCTGGCTTGCTCATTCTACCTC
* * * * *
17222168 TTCGGTCGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
62 TTCAGCCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
17222233 AGTCTAAGATCGGACAGATTGAGGGTTGCG
126 AGTCTAAGATC-GACAGATCGAGGGTTGTG
* *
17222263 ACAGCAGGATCGACAGCATGCAGGGGGGAATGGGCCGGTCCCTGGCTTGCTCATTCTACCTCTTC
1 GCAGCAGGATCGACAGCATGCA-GGGGGAATGGGCCGATCCCTGGCTTGCTCATTCTACCTCTTC
* * * *
17222328 AGCCGACTGAGTGCTCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGT
65 AGCCGGCTGAGCGC-CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
17222393 CTAAGATCAGATCGGACCGAGGGTTGCG
129 CTAAGATC-GA-CAGATCGAGGGTTGTG
*
17222421 GCAGTAGGA
1 GCAGCAGGA
17222430 CTAGGAGCAG
Statistics
Matches: 374, Mismatches: 89, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 104 0.28
158 174 0.47
159 82 0.22
160 11 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (154 bp):
GCAGCAGGATCGACAGCATGCAGGGGGAATGGGCCGATCCCTGGCTTGCTCATTCTACCTCTTCA
GCCGGCTGAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCGACAGATCGAGGGTTGTG
Found at i:17223404 original size:26 final size:26
Alignment explanation
Indices: 17223375--17223427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17223365 GTTTACTTAG
17223375 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
17223401 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17223427 G
1 G
17223428 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17223899 original size:26 final size:26
Alignment explanation
Indices: 17223869--17223921 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17223859 GTTGGTTTAG
17223869 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
17223895 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17223921 G
1 G
17223922 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17225000 original size:26 final size:26
Alignment explanation
Indices: 17224970--17225022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17224960 GTTGACTTAG
*
17224970 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17224996 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17225022 G
1 G
17225023 ATTGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17225506 original size:26 final size:26
Alignment explanation
Indices: 17225470--17225522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17225460 GTTGGCTGAG
17225470 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
17225496 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17225522 G
1 G
17225523 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17225690 original size:26 final size:26
Alignment explanation
Indices: 17225654--17225706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17225644 GTTGACTTAG
17225654 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
17225680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
17225706 G
1 G
17225707 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:17225771 original size:184 final size:184
Alignment explanation
Indices: 17225313--17225771 Score: 503
Period size: 184 Copynumber: 2.5 Consensus size: 184
17225303 GTTGACTTAG
* * * * * *
17225313 GCATACAGAGTTCATT-CCAATCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCAGGATCAATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * ** * * ** ** *
17225377 GCATGCAGGGGGGACCGGGCCGGTCCCCAGCTTGCGTATTTTGGCTCTTCGACCGGTTGAGCACC
66 GCACGTAGGGGGGACTAGGCCGATCCCCAGCTTGCGTATTTTGCCTCCCCGACAAGCTGAGCACC
* * *
17225442 CGCACGCTCATTTCGTGAGTTGGCTGAGGCATACAGAGTTCATTCCATGTCTAA
131 CGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAA
* * * * *
17225496 GCATATAGAGTTCATTCCCAGTCTAAGATTAGACCGGA-TCGAGGCTTGCGCCAGCAGGATCGTC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCAGGATCGAC
* * * * *
17225560 TGCACGTAAGGGGGA-TCGAGTCGATCCCCAGCTTGCGTATTTTGCCTCCCCTACAAGCTGAGCA
65 AGCACGTAGGGGGGACTAG-GCCGATCCCCAGCTTGCGTATTTTGCCTCCCCGACAAGCTGAGCA
* * * * *
17225624 CCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCA-GTCTAA
129 CCCGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * * *
17225680 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGATAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
17225745 GCACGTAGGGGGGACTAGGCCGATCCC
66 GCACGTAGGGGGGACTAGGCCGATCCC
17225772 TGGTTTGCTC
Statistics
Matches: 224, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
183 17 0.08
184 201 0.90
185 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGGACTAGGCCGATCCCCAGCTTGCGTATTTTGCCTCCCCGACAAGCTGAGCACC
CGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:17226027 original size:26 final size:26
Alignment explanation
Indices: 17225997--17226049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17225987 GTTGGCTTAG
*
17225997 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17226023 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17226049 G
1 G
17226050 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17226727 original size:26 final size:26
Alignment explanation
Indices: 17226697--17226749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17226687 GTCGACTTAG
*
17226697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17226723 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17226749 G
1 G
17226750 ATGGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17227811 original size:26 final size:26
Alignment explanation
Indices: 17227774--17227826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17227764 GTTAACTTAG
17227774 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
17227800 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTATAA
17227826 G
1 G
17227827 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:17228093 original size:158 final size:157
Alignment explanation
Indices: 17227872--17228986 Score: 550
Period size: 158 Copynumber: 6.7 Consensus size: 157
17227862 GTAACACGCG
* *
17227872 GGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG-
1 GGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
* *
17227936 TCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
66 TC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAG
* *
17228001 GTTGTGGTAGCGGGACCGGTAGCACGCA
130 GTTGTGGTAGCAGGACCGGTAGCACACA
* * * * * * *
17228029 GATGGGGACCGGGTCGATCCCCGG-TTG-GCACATTATGCCTCTCCGGCCGACTCAACGTCTGCA
1 G-GGGGGACCGGGTCGATCCCCGGCTTGTG--CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCA
* * * ** *
17228092 CGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATT-CATAGTCTAAG-ATCAGACCGGGC
63 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGA-CGGAC
** * * ** *
17228155 CGAGGGTTGTGACAGTAGGATCGACAGCACATA
126 CGA-GGTTGTGGTAGCAGGACCGGTAGCACACA
* * * *
17228188 GGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGACTGAGCGCCCGTACGC
1 GGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
*
17228253 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTA-ACAGGACCGAA
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGAC-GGACCG-A
17228317 GGTTGTGGTAGCAGGACCGGTAGCGGGATCGACA
129 GGTTGTGGTAGCAGGACCGGTAGC---A-C-ACA
* * * * * * *
17228351 GCACACAGAGAGGGACCCGGTTGATTCCTGACTTGTGCATTATGCCTCTCAGACCGACCTCTCTG
1 G------G-G-GGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT----CCG----GTC-G
* * *
17228416 ACCAACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
49 ----ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
** * * * * *
17228480 CTAAGCATACGGA-GTTCATTCCTA-GTCTAAGATTGG-A-CCGGACCGAGGGTTGCAGCAGCA
109 CTAAGC-CCCAGACG--GA--CCGAGGT-T--G--TGGTAGCAGGACC---GGTAGCA-CA-CA
* * * * **
17228540 GGATCGGCAGCACGCAGGGGGAACCCTGCTTATCCCCCGCTTGCGCATTCTGCCTCTCCGACCGA
1 GG---GG--GGAC-C---GGG-----T-C-GATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGA
* * *
17228605 CTGAGCGCCCGCACGCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
50 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * ** **
17228670 CCCAGCCGAATCGAGGGTTGTTGCAGTGGGACCGACAGCACACA
115 CCCAGACGGACCGA-GGTTGTGGTAGCAGGACCGGTAGCACACA
* * * * ** * *
17228714 GAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGG-CTGGTTTAGC-CCTCGAA
1 G-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTC-GACTGAGCGCC-CGCA
* * * * ** * *
17228777 CGCTCGTTTCGCGGGTTGACATAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGAC
63 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGA-CGGAC
* ** * * *** *
17228840 CGAGGGTTGCGACAGCAAGATCAACAGCACGCA
126 CGA-GGTTGTGGTAGCAGGACCGGTAGCACACA
* * * * * * *
17228873 GGGGGGATCAGGCCGGTCCCCGGCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGCCCGCACGC
1 GGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
* * *
17228938 TCGTTTCATGCGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17228987 ATACGGAGTT
Statistics
Matches: 722, Mismatches: 151, Indels: 168
0.69 0.15 0.16
Matches are distributed among these distances:
156 1 0.00
157 14 0.02
158 298 0.41
159 135 0.19
160 5 0.01
161 1 0.00
162 1 0.00
163 3 0.00
166 3 0.00
169 2 0.00
170 4 0.01
171 32 0.04
172 2 0.00
174 3 0.00
175 5 0.01
176 4 0.01
177 2 0.00
178 1 0.00
179 8 0.01
180 3 0.00
181 1 0.00
182 3 0.00
183 6 0.01
184 119 0.16
185 4 0.01
186 7 0.01
187 3 0.00
188 4 0.01
189 13 0.02
190 3 0.00
191 3 0.00
192 5 0.01
193 3 0.00
195 1 0.00
197 20 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGG
TTGTGGTAGCAGGACCGGTAGCACACA
Found at i:17228487 original size:26 final size:26
Alignment explanation
Indices: 17228458--17228510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17228448 GTTGACTTAG
17228458 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17228484 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17228510 G
1 G
17228511 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17229191 original size:26 final size:26
Alignment explanation
Indices: 17229155--17229207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17229145 GTTGGCTTAG
17229155 GCATACGGAGTTAATTCC-ATGTCTAA
1 GCATACGGAGTTAATTCCTA-GTCTAA
*
17229181 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
17229207 G
1 G
17229208 ATTGTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:17230168 original size:158 final size:156
Alignment explanation
Indices: 17229875--17230414 Score: 410
Period size: 158 Copynumber: 3.4 Consensus size: 156
17229865 CCCAATCAAA
* ** * * **
17229875 GCATATGGAGTTCATTCCCA-GTCTAAG-GTCAGACCAGACCGAGGGTTGCGATAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * * * * * ***
17229938 TAGCACGTAGGGGCGATCGAGCCAATCCCCGGCTTGCGCATTCTGCCTTTCTGGCTGGCTGAGCG
64 TAGCACGCAGGGGGGACCAAGTCGAT-CCCTGCATGCGCATTATGCCTCTCCGGCCAACTGAGCG
*
17230003 CCCGCACGGCCGTTTTGTGGGTTGGCTTAG
128 CCAGCAC-GCCGTTTTGTGGGTTGGCTTAG
* * * * *
17230033 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGTT
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
* ** * * * *
17230098 GCACGTAGAGGGGGACCGGGTGGATCCCCT-CATGCGCATTATGCCTCTCCGGTCAGCTTAGCGC
66 GCACGCAG-GGGGGACCAAGTCGAT-CCCTGCATGCGCATTATGCCTCTCCGGCCAACTGAGCGC
* * * *
17230162 CAGCACGCTCATTTCGTGGGTTGACTTAT
129 CAGCACGC-CGTTTTGTGGGTTGGCTTAG
** * *
17230191 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGA-GGTT-TCGGTAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGT-GGCAGCAGGATCG
** * * * * * *
17230252 ACAGCACGCAGGGGGGACCAAGTCGATCCTTGGCTTGTGCATTCTGCGTCTCCGGCCAACTGATC
63 GTAGCACGCAGGGGGGACCAAGTCGATCCCT-GCATGCGCATTATGCCTCTCCGGCCAACTGAGC
* **
17230317 GCCTGCACTATCGTTTTGTGGGTTGGCTTAG
127 GCCAGCAC-GCCGTTTTGTGGGTTGGCTTAG
* * * *
17230348 GCATACAGAGTTTATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGAGCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
17230413 GC
66 GC
17230415 GCGGGATCAG
Statistics
Matches: 296, Mismatches: 72, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
155 3 0.01
156 17 0.06
157 106 0.36
158 149 0.50
159 21 0.07
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACGCAGGGGGGACCAAGTCGATCCCTGCATGCGCATTATGCCTCTCCGGCCAACTGAGCGCCA
GCACGCCGTTTTGTGGGTTGGCTTAG
Found at i:17230384 original size:157 final size:157
Alignment explanation
Indices: 17229996--17230406 Score: 398
Period size: 157 Copynumber: 2.6 Consensus size: 157
17229986 TTCTGGCTGG
* ** * *
17229996 CTGAGCGCCCGCACGGCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGC
1 CTGAGCGCCAGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
** * *** * ** *
17230061 CCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGTTGCACGTAGAGGGGGACCGGGTGGATCCC
66 CCCAACCGGACCGA-GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAAGTCGATCCC
* *
17230126 CTCATGCGCATTATGCCTCTCCGGTCAG
130 CTCATGCGCATTATGCCTCTCCGGCCAA
* * * * * *
17230154 CTTAGCGCCAGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
1 CTGAGCGCCAGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
** ** *
17230218 ATCGGACCGGACCGAGGTT-TCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCAAGTCGAT-C
65 CCCCAACCGGACCGAGGTTGT-GGCAGCAGGATCGACAGCACGCAGAGGGGGACCAAGTCGATCC
* * * * *
17230280 CTTGGCTTGTGCATTCTGCGTCTCCGGCCAA
129 CCT--CATGCGCATTATGCCTCTCCGGCCAA
* * * * *
17230311 CTGATCGCCTGCACTATCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGC
1 CTGAGCGCCAGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
17230376 CCCAACCGGACCGAGGGTTGTGGCAGCAGGA
66 CCCAACCGGACCGA-GGTTGTGGCAGCAGGA
17230407 GCGGTAGCGC
Statistics
Matches: 198, Mismatches: 48, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
155 3 0.02
156 17 0.09
157 102 0.52
158 72 0.36
159 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
CTGAGCGCCAGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAACCGGACCGAGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAAGTCGATCCCC
TCATGCGCATTATGCCTCTCCGGCCAA
Found at i:17231055 original size:26 final size:26
Alignment explanation
Indices: 17231019--17231071 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17231009 GTTGGCCTAG
17231019 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17231045 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17231071 G
1 G
17231072 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17231785 original size:26 final size:26
Alignment explanation
Indices: 17231749--17231801 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17231739 GTTGACTTAG
17231749 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17231775 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17231801 G
1 G
17231802 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17232170 original size:159 final size:158
Alignment explanation
Indices: 17231775--17232263 Score: 500
Period size: 158 Copynumber: 3.1 Consensus size: 158
17231765 CCCAGTCTAA
* * * **
17231775 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGATTTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * *
17231840 GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACTGGCTGAGCAC
66 GCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAGCGC
** *
17231904 CCATACGCCCGTTTCATGGGTTGGCTTAG
130 CTGTACGCTCGTTTCATGGGTTGGCTTAG
* *** * * * * * *
17231933 GCATAGGGAGTTCATT-CCATGTCTAATCCCCAG-TCGGATCGAGGGTTGTGACAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
17231996 TAGCATGCAGAGGGGAACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGACTCAGC
64 CAGCATGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGC
*
17232061 GCCTGTACGCTCGTTTCATGGGTTGACTTAG
128 GCCTGTACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
17232092 TCATCCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
17232157 GCACGCAGGGGGGA-CTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
66 GCATGCAGGGGGGACCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* * *
17232221 CTGTTCGCTCGTTTCGTGGGTTGGCCTAG
130 CTGTACGCTCGTTTCATGGGTTGGCTTAG
17232250 GCATACGGAGTTCA
1 GCATACGGAGTTCA
17232264 CTCATTGTCT
Statistics
Matches: 258, Mismatches: 66, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 4 0.02
158 131 0.51
159 118 0.46
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
TGTACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17232299 original size:26 final size:26
Alignment explanation
Indices: 17232251--17232301 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17232241 TTGGCCTAGG
**
17232251 CATACGGAGTTCACTCATTGTCTAAA
1 CATACGGAGTTCACTCACAGTCTAAA
* *
17232277 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCACTCACAGTCTAA
17232302 GATTGGATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCACTCACAGTCTAAA
Found at i:17232416 original size:184 final size:184
Alignment explanation
Indices: 17232097--17232444 Score: 446
Period size: 184 Copynumber: 1.9 Consensus size: 184
17232087 CTTAGTCATC
*
17232097 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACG
1 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACG
* * * * * ***
17232162 CAGGGGGGACTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGTTC
66 AAGGGGGGACTAGGTCGATACCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCTACAC
*
17232227 GCTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCACTCATTGTCTAAACATA
131 GCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCACTCATTGTCTAAACATA
* * ** * ***
17232281 CGGAGTTCATTCCCAGTCTAAGATTGGATCAGACGGAGGTTTGCGGTAGCAGGATCGGTGGCACG
1 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACG
* * * ** * *
17232346 TAAGGGGGGTC-GGGTCGATACCCGGCTTTTACATTCTGCCTTTCCGGCCTGCTGAGCACCTACA
66 -AAGGGGGGACTAGGTCGATACCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCTACA
*
17232410 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
130 CGCTCGTTTCATGGGTTGGCCTAGGCATACGGAGT
17232445 ATTCATTCCA
Statistics
Matches: 137, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 129 0.94
185 8 0.06
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (184 bp):
CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACG
AAGGGGGGACTAGGTCGATACCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCACCTACAC
GCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCACTCATTGTCTAAACATA
Found at i:17232659 original size:26 final size:26
Alignment explanation
Indices: 17232619--17232671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17232609 GTTGACTTAG
*
17232619 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
* *
17232645 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
17232671 G
1 G
17232672 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:17234243 original size:159 final size:157
Alignment explanation
Indices: 17233889--17234275 Score: 377
Period size: 159 Copynumber: 2.5 Consensus size: 157
17233879 TAAGCGTACG
* ** ** *
17233889 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATTGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCA
* * * *
17233954 GGGGGGCCAGGCCGATCCTCGGCTTGCACATTCTGCCTTTTTGACCGACTAAGTGCCCGCACGCC
66 GGGGGGCCAGGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGACTAAGTGCCCGCACGCC
* * **
17234019 CGTTTCGTGGGTTGGCTTAGGCATAGG
131 CGTTTCATGGGTTGACTTAGGCATACA
*** * **
17234046 GAGTTCATT-CCATGTCTAATCCCCAGTC-GGACCGAGGGTT-CTGACAGC-GAGACCGGTAGCA
1 GAGTTCATTCCCA-GTCTAA-GATCAGACTGGACCGAGGGTTGC-GACAGCAG-GACCGACAGCA
* * * ** *
17234107 TGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGACTCAGTGCCCG
62 CGCAG-GGGGG-CCAGGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGACTAAGTGCCCG
* * * *
17234172 CATGCTCGTTTCATGGGTTGACTTAGTCATCCA
125 CACGCCCGTTTCATGGGTTGACTTAGGCATACA
* ** * *
17234205 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCA
17234270 GGGGGG
66 GGGGGG
17234276 ACTGGGTCGG
Statistics
Matches: 180, Mismatches: 40, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.02
157 41 0.23
158 18 0.10
159 112 0.62
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCA
GGGGGGCCAGGCCGATCCTCGACTTGCACATTATGCCTCTTCGACCGACTAAGTGCCCGCACGCC
CGTTTCATGGGTTGACTTAGGCATACA
Found at i:17234522 original size:184 final size:184
Alignment explanation
Indices: 17234205--17234565 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 184
17234195 TAGTCATCCA
* * *
17234205 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * **
17234270 GGGGGGACTGGGTCGGTCCCCAGCTTACGAATTCTGCCTCTCTGGCCGGCTGAGCACCCGTTCGC
66 GGGGGGACTGGGTCGATACCCAGCTTACGAATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
17234335 TCGTTTCGTGGGTTGGCCTAGGCATACAGAGTTCATT-CATTGTCTAAACATATG
131 TCGTTTCGTGGGTTGGCCTAGGCATACAGAGTTCATTCCA-TGTCTAAACATATG
** ** * * *
17234389 GAGTTCATTCCCAGTCTAAGATTGGA-TCAGACGGAGGTTTGCGGCAGCAGGATCGGCAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * *
17234453 AGGGGGGA-TCGGGTCGATACCCGGCTT-CTACATTCTGCTTCTCCGACCTGCTGAGCGCCCGCA
65 AGGGGGGACT-GGGTCGATACCCAGCTTACGA-ATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
* *
17234516 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CGCTCGTTTCGTGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAA
17234566 GCCCCAGTCG
Statistics
Matches: 150, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 144 0.96
185 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGGACTGGGTCGATACCCAGCTTACGAATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAACATATG
Found at i:17235048 original size:159 final size:159
Alignment explanation
Indices: 17234793--17235081 Score: 357
Period size: 160 Copynumber: 1.8 Consensus size: 159
17234783 TACGACAGCA
* * * * * *
17234793 GGATCTGCAGCACGCAAAGGGGATCGGGCCGATCCCTAGCTTGCGAATTCTGCCTCTTGGACCGG
1 GGATCGGCAGCACGCAAAGGGGATCGGGCCGATCCCCAACTTACGAATTATGCCTCTTCGACCGG
* * * * * *
17234858 CTGAGCGCTAGCACACCCCATTTCTTAGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
66 CTCAGCGCCAGCACACCCCATTTCGTAGGTTGACTTAGGCAAACGGAGTTCATTCCCA-GTCTAA
17234922 GCCCCAGTCGAACTGAGGGTTGTGGCAACG
130 GCCCCAGTCGAACTGAGGGTTGTGGCAACG
* * *
17234952 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCAACTTACGCATTATGCCTCTTCGACCG
1 GGATCGGCAGCACGCA-AAGGGGATCGGGCCGATCCCCAACTTACGAATTATGCCTCTTCGACCG
* * * * * *
17235017 GCTCAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTATGCAAACGGAGTTCATTCCCAGTCTAA
65 GCTCAGCGCCAGCACACCCCATTTCGTAGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
17235081 G
130 G
17235082 ATTGGACCAA
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
159 52 0.49
160 55 0.51
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGATCGGCAGCACGCAAAGGGGATCGGGCCGATCCCCAACTTACGAATTATGCCTCTTCGACCGG
CTCAGCGCCAGCACACCCCATTTCGTAGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAG
CCCCAGTCGAACTGAGGGTTGTGGCAACG
Found at i:17235066 original size:344 final size:348
Alignment explanation
Indices: 17234286--17235081 Score: 910
Period size: 355 Copynumber: 2.3 Consensus size: 348
17234276 ACTGGGTCGG
* * * ** *
17234286 TCCCCAGCTTACGAATTCTGCCTCTCTGGCCGGCTGAGCACCCGTTCGCTCGTTTCGTGGGTTGG
1 TCCCCAGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * ** * * * *
17234351 CCTAGGCATACAGAGTTCATTCA-TTGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATTGGA
66 CTTAGGCATACGGAGTTCATTCACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * * * * ** * *
17234415 TCAGACGGAGGTTTGCGGCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATACCCGGCTT
131 CCAAACGGAGGGTTACGACAGCAGGATCGGCAGCACGCAAAGGGGATCGGGCCGATACCCAGCTT
* * * * * * * *
17234480 CTACATTCTGCTTCTCCGACCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
196 CGACATTCTGCCTCTCCGACCGGCTGAGCGCCAGCACCCCCATTTCGTAGGTTGGCTTAGGCATA
*
17234545 CGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGATGGTTGTGGCAGCAGGACCAGCAGCGGG
261 CGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGT----G--GGA-CA-CAGCGGG
*
17234610 ATAGGCAGCACGTAGAAAGGGATCGGGCTGA
318 ATAGGCAGCACGCAGAAAGGGATCGGGCTGA
* * ** * *
17234641 TCCCCGGCTTACGCATTATGCCTCTCTGGCCGACTGAATGCCCTCACGCTCATTTCGTGGGTTGA
1 TCCCCAGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
17234706 CTTAGGCATACGGAGTTCA-TCACCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAA
66 CTTAGGCATACGGAGTTCATTCACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* *
17234770 CCAAACTGAGGGTTACGACAGCAGGATCTGCAGCACGCAAAGGGGATCGGGCCGAT-CCCTAGCT
131 CCAAACGGAGGGTTACGACAGCAGGATCGGCAGCACGCAAAGGGGATCGGGCCGATACCC-AGCT
** * *
17234834 TGCGA-ATTCTGCCTCTTGGACCGGCTGAGCGCTAGCACACCCCATTTCTTAGGTTGGCTTAGGC
195 T-CGACATTCTGCCTCTCCGACCGGCTGAGCGCCAGCAC-CCCCATTTCGTAGGTTGGCTTAGGC
* *
17234898 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGT-GG-CA-A-CGGGATCGG
258 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGGACACAGCGGGATAGG
**
17234959 CAGCACGCAGAGGGGGATCGGGCTGA
323 CAGCACGCAGAAAGGGATCGGGCTGA
* * *
17234985 TCCCCAACTTACGCATTATGCCTCT-TCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 TCCCCAGCTTACGCATTATGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
17235049 ACTTATGCAAACGGAGTTCATTC-CCAGTCTAAG
65 ACTTAGGCATACGGAGTTCATTCACCAGTCTAAG
17235082 ATTGGACCAA
Statistics
Matches: 373, Mismatches: 62, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
343 1 0.00
344 112 0.30
345 3 0.01
347 2 0.01
349 2 0.01
354 6 0.02
355 180 0.48
356 67 0.18
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (348 bp):
TCCCCAGCTTACGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
CCAAACGGAGGGTTACGACAGCAGGATCGGCAGCACGCAAAGGGGATCGGGCCGATACCCAGCTT
CGACATTCTGCCTCTCCGACCGGCTGAGCGCCAGCACCCCCATTTCGTAGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGGACACAGCGGGATAGGCAG
CACGCAGAAAGGGATCGGGCTGA
Found at i:17235116 original size:159 final size:158
Alignment explanation
Indices: 17234737--17235239 Score: 442
Period size: 159 Copynumber: 3.2 Consensus size: 158
17234727 ACCAGTCTAA
* * *
17234737 GCATACGGAGTTCATTCCCA-GTGTAAGATCGAACCAAACTGAGGGTTACGACAGCAGGATCTGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAAACTGAGGGTTGCGACAGCAGGATCGGC
* * * * * *
17234801 AGCACGCA-AAGGGGATCGGGCCGATCCCTAGCTTGCGAATTCTGCCTCTTGGACCGGCTGAGCG
65 AGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGGCT-AGCG
* * * * * * *
17234865 CTAGCACACCCCATTTCTTAGGTTGGCTTAG
129 CCAGCAC-GCTCGTTTCGTGGGTTGGCTTAT
* ** * ** * * * * *
17234896 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGCAACGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAAACTGAGGGTTGCGACAGCAGGATCGGCA
* *
17234961 GCACGCAGAGGGGGATCGGGCTGATCCCCAACTTACGCATTATGCCTCTTCGACCGGCTCAGCGC
66 GCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGGCT-AGCGC
* *
17235026 CCGCACGCTCGTTTCGTGGGTTGACTTAT
130 CAGCACGCTCGTTTCGTGGGTTGGCTTAT
* * * * * **
17235055 GCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACTGAGGGTTGCGATAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAAACTGAGGGTTGCGACAGCAGGATCGGC
* * * * * * * ** *
17235119 AGCACACAG-GGGGGACCAGGCTGATCCTCGGTTTACGCATTCTACCTC-TCTGGTCGGCTAGGT
65 AGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTC-GACCGGCTA-GC
* *
17235182 GCCTGCACGCTTGTTTCGTGGGTTGGCTT-T
128 GCCAGCACGCTCGTTTCGTGGGTTGGCTTAT
17235212 GGCATACGGAGTTCATTCCATGTCTAAG
1 -GCATACGGAGTTCATTCCATGTCTAAG
17235240 CATACGGAGT
Statistics
Matches: 271, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 7 0.03
158 89 0.33
159 120 0.44
160 55 0.20
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAAACTGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGGCTAGCGCC
AGCACGCTCGTTTCGTGGGTTGGCTTAT
Found at i:17235249 original size:26 final size:26
Alignment explanation
Indices: 17235213--17235265 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17235203 GTTGGCTTTG
17235213 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
17235239 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
17235265 G
1 G
17235266 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:17235956 original size:26 final size:26
Alignment explanation
Indices: 17235926--17235976 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17235916 TGACTTAGGC
17235926 ATACAGAGTTC-ATCCCCAGCCTAAGT
1 ATACAGAGTTCAAT-CCCAGCCTAAGT
*
17235952 ATACAGAGTTCAATCCCAGTCTAAG
1 ATACAGAGTTCAATCCCAGCCTAAG
17235977 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (26 bp):
ATACAGAGTTCAATCCCAGCCTAAGT
Found at i:17236295 original size:26 final size:26
Alignment explanation
Indices: 17236266--17236318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17236256 GTTGACTTAG
17236266 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17236292 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17236318 G
1 G
17236319 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17238095 original size:27 final size:28
Alignment explanation
Indices: 17238065--17238137 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 28
17238055 CGAAAGAAGC
17238065 AGTCCAAAGGGA-AG-GACCGTGACCAGG
1 AGTCCAAA-GGATAGAGACCGTGACCAGG
* *
17238092 AGT-CTAAGGATGGAGACCGTGACCAGG
1 AGTCCAAAGGATAGAGACCGTGACCAGG
* *
17238119 AGT-CTAAGGATGGAGACCG
1 AGTCCAAAGGATAGAGACCG
17238138 AGATCGTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.07
26 4 0.10
27 35 0.83
ACGTcount: A:0.32, C:0.19, G:0.37, T:0.12
Consensus pattern (28 bp):
AGTCCAAAGGATAGAGACCGTGACCAGG
Found at i:17238136 original size:21 final size:24
Alignment explanation
Indices: 17238085--17238135 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 24
17238075 GAAGGACCGT
17238085 GACCAGGAGTCTAAGGATGGAGACC
1 GACCAGGAGTCTAAGGATGGAGA-C
17238110 GTGACCAGGAGTCTAAGGATGGAGAC
1 --GACCAGGAGTCTAAGGATGGAGAC
17238136 CGAGATCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.31, C:0.18, G:0.37, T:0.14
Consensus pattern (24 bp):
GACCAGGAGTCTAAGGATGGAGAC
Found at i:17242854 original size:159 final size:159
Alignment explanation
Indices: 17242639--17243224 Score: 469
Period size: 164 Copynumber: 3.6 Consensus size: 159
17242629 CCAATCCCCA
* * * * * * *
17242639 GCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * *
17242704 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGACAGCAGGACCGACAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* * * *
17242769 TACATAGACAAGGACCGGGTCGATTCTCG
131 CACACAGACAAGGACCGAGTCGATCCTCG
** * * * * * * *
17242798 GCTTGTGCATTATGCCTCTTCGATCGGCTCAGTACCCGTACGCTTGTTTCATGGGTTGACTTATG
1 GCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* ** * * * * *
17242863 CATACGGAGTTCATTCC-TAGTCCAAGATCAAATCAGACCAGACAAAGGGTTATGGCAGCAGGAT
66 CATACGGAGTTCATTCCAT-GTCTAAGCCCCAGTCGGACC-G----AGGGTTGTGGCAGCAGGAC
* * ****
17242927 CAACAGCACGCAGGGGGGGACCGAGTCGATCCTCG
125 CGACAGCACACAGACAAGGACCGAGTCGATCCTCG
* * * *
17242962 GCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
17243027 CATACGGAGTTCATTCCATGTCTAAGCCCCGGTCGAACCGAGGGTTGTGGCAGCAGGACCGACAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* * *
17243092 CAGGATCGATAGCACACAAAGGGGGATCG-GGCTGATCCTCG
131 C---A-C---A-CAGAC-AA---GGACCGAGTC-GATCCTCG
* * * ** * *
17243133 GCTTACGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCATGCTTATTTTC-TGGGTTGACATAG
1 GCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGC-TCGTTTCATGGGTTGGCTTAG
*
17243197 GCATACGGAGTTCATACCCA-GTCTAAGC
65 GCATACGGAGTTCAT-TCCATGTCTAAGC
17243225 ATATAGAGTT
Statistics
Matches: 326, Mismatches: 79, Indels: 32
0.75 0.18 0.07
Matches are distributed among these distances:
158 1 0.00
159 101 0.31
160 1 0.00
162 1 0.00
163 2 0.01
164 122 0.37
165 1 0.00
167 2 0.01
170 2 0.01
171 85 0.26
172 8 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
CACACAGACAAGGACCGAGTCGATCCTCG
Found at i:17243226 original size:26 final size:26
Alignment explanation
Indices: 17243197--17243249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17243187 GTTGACATAG
*
17243197 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
17243223 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
17243249 G
1 G
17243250 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:17243910 original size:26 final size:27
Alignment explanation
Indices: 17243881--17243934 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
17243871 GTTGACTTAG
* *
17243881 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTCCCCAGTCTAA
17243907 GCATACAGAGTTCATTCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCCAGTCTAA
17243934 G
1 G
17243935 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCCAGTCTAA
Found at i:17244298 original size:159 final size:159
Alignment explanation
Indices: 17243974--17244338 Score: 468
Period size: 159 Copynumber: 2.3 Consensus size: 159
17243964 GGATCGATAG
* * *
17243974 CACGCAGA-GGGGATCGAGCCGATCCCTGGCTTG-TGCATTCTGCCTCTCCGGTCGGTTGAGCGT
1 CACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCT-CATTCTGCCTCTCCGATCGGTTGAGCGC
** * **
17244037 CCACACGCCCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTACGCCCCAGTCG
65 CCACACGCCCGTTTCATACGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * *
17244102 GACCGAGGGTTGTGGCAGCGAAACCTATAG
130 GACCGAGCGTTGTGGCAGCGAAACCTACAA
* * *
17244132 CAAGCAGAGGGGGACCGGGCCAATCCCTGGCTTGCTCATTCTGCCTC-CCTGATCGGTTGAGCGC
1 CACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCTCC-GATCGGTTGAGCGC
* *
17244196 CCACACGCCCGTTTGATACGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
65 CCACACGCCCGTTTCATACGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
**
17244261 GACCGAGCGTTGTGGCAGCGGGACC-AGCAA
130 GACCGAGCGTTGTGGCAGCGAAACCTA-CAA
* * * * *
17244291 CACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTTTGCCTCT
1 CACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCT
17244339 TCGACGGGCT
Statistics
Matches: 176, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
158 10 0.06
159 165 0.94
160 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (159 bp):
CACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCTCATTCTGCCTCTCCGATCGGTTGAGCGCC
CACACGCCCGTTTCATACGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGCGTTGTGGCAGCGAAACCTACAA
Found at i:17244713 original size:26 final size:26
Alignment explanation
Indices: 17244677--17244729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17244667 GTTAACGTAG
*
17244677 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
17244703 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
17244729 G
1 G
17244730 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:17245316 original size:304 final size:304
Alignment explanation
Indices: 17244767--17245342 Score: 730
Period size: 304 Copynumber: 1.9 Consensus size: 304
17244757 TAGGATCGAT
* * **
17244767 AGCACGCAGGGGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATTGGTTGAGCAC
1 AGCACGCAGGGGGAATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCAC
*
17244832 CCATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCATACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * ** * *
17244897 GATTGAGGGTTGTGGTAGTGGGACCGGCAGCACGTAGAGGGGGATCGCATCGATCCCCGACTTGA
131 GATCGAGGGTTGTGGCAGTGGGACCGGCAGCACACAGAGGGGGATAGCATCAATCCCCGACTTGA
** ** * ** ** *
17244962 GCATTATGCCTCTTCGGTCGGCTTAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
196 GCATTATGCCTCTTCGACCAACTGAGCACCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACA
17245027 GAGTTCATTCCAGTGTAAGATCGAACCGGTCCGAAGGTTACGGC
261 GAGTTCATTCCAGTGTAAGATCGAACCGGTCCGAAGGTTACGGC
* * *
17245071 AGCACGCAAGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-TCGGTCGACTGAGC
1 AGCACGC-AGGGGGAATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GATCGACTGAGC
* * *
17245134 ACCCATACGTCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-
64 ACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
*** * * *
17245198 CAGGATCGAGGGTTGTGGCAGTGGTTTCGGCAGCACACAGAGGGGGAATAG-GTCAATCCCGGGC
129 C-GGATCGAGGGTTGTGGCAGTGGGACCGGCAGCACACAGAGGGGG-ATAGCATCAATCCCCGAC
* * * * *
17245262 TTGCGCATTCTGCCTC-TCTGACCAACTGAGCACCTAAACGCTCGTTTCGTGGGTTGTCTTAGGC
192 TTGAGCATTATGCCTCTTC-GACCAACTGAGCACCCAAACGCTCATTTCGTGGGTTGACTTAGGC
17245326 ATACAGAGTTCATTCCA
256 ATACAGAGTTCATTCCA
17245343 TGTCTAAGCA
Statistics
Matches: 229, Mismatches: 38, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
303 4 0.02
304 214 0.93
305 11 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (304 bp):
AGCACGCAGGGGGAATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGATCGACTGAGCAC
CCATACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
GATCGAGGGTTGTGGCAGTGGGACCGGCAGCACACAGAGGGGGATAGCATCAATCCCCGACTTGA
GCATTATGCCTCTTCGACCAACTGAGCACCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACA
GAGTTCATTCCAGTGTAAGATCGAACCGGTCCGAAGGTTACGGC
Found at i:17245375 original size:26 final size:26
Alignment explanation
Indices: 17245324--17245376 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17245314 GTTGTCTTAG
*
17245324 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
17245350 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
17245376 G
1 G
17245377 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:17246534 original size:26 final size:26
Alignment explanation
Indices: 17246498--17246550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17246488 GTTGACTTAG
*
17246498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
17246524 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
17246550 G
1 G
17246551 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:17247201 original size:26 final size:26
Alignment explanation
Indices: 17247170--17247222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17247160 GTTGACTTAT
*
17247170 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17247196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17247222 G
1 G
17247223 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17247506 original size:159 final size:158
Alignment explanation
Indices: 17247196--17247534 Score: 387
Period size: 159 Copynumber: 2.1 Consensus size: 158
17247186 CCTAGTCTAA
* ** * * *
17247196 GCATACGGAGTTCATTCCCA-GTCTAAGATCTAACTGGACCGAGGGTTGTGGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACAGGACCGAC
** * * *
17247260 AGCATGCAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTACGCCTCTCCAGCTGGCTGAGCGC
65 AGCACACAGGAGGGACCGAGCCGATCACCAGCTTGCACATTACGCCTCTCCAGCTGACTGAGCGC
*
17247325 CCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGAACGCCCATTTCGTGGGTTGGCTTAG
* ***
17247354 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACAGGACCGACA
* * * * * *
17247419 GCACACAGAGGGGGACTGAGCCGATCATCTGCTTGCACATT-CTGCCTCTCC-GGTCGATTGAGC
66 GCACACAG-GAGGGACCGAGCCGATCACCAGCTTGCACATTAC-GCCTCTCCAGCT-GACTGAGC
* * * *
17247482 GCCCGAATGCTCGTTTCGTTGGTTGGCTTAG
128 GCCCGAACGCCCATTTCGTGGGTTGGCTTAG
17247513 GCATACGGAGTTCATTCCATGT
1 GCATACGGAGTTCATTCCATGT
17247535 CCAAGCATAC
Statistics
Matches: 150, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 60 0.40
159 87 0.58
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTTTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACAGGACCGACA
GCACACAGGAGGGACCGAGCCGATCACCAGCTTGCACATTACGCCTCTCCAGCTGACTGAGCGCC
CGAACGCCCATTTCGTGGGTTGGCTTAG
Found at i:17248617 original size:160 final size:158
Alignment explanation
Indices: 17248265--17248762 Score: 483
Period size: 157 Copynumber: 3.2 Consensus size: 158
17248255 AACCTAAGCG
* * * * * **
17248265 TACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGATAGTAGGATCGGTAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCA
* * * *
17248330 CGCAGGGAGGATCTGGCCGATCCCCGAG-TTG-ACATTCTGCCTCTCC-AGTCGACTGAGCGCCC
66 CGCAGGGGGGATCCGGCCGATCCCCG-GCTTGCACATTCTGCCTCTCCGACTAG-CTGAGCGCCC
* *
17248392 GCACGCCCGTTTTGTGGGTTAGCTTAGGCA
129 GCACGCTCGTTTCGTGGGTTAGCTTAGGCA
* * ** ** ** * *
17248422 TAGGGAGTTCATT-CCATGTGTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACTCGACAA
1 TACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGA-TCGACAG
* * * * *
17248486 CACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCATCTCCGACTAGCTCAGCGCC
64 CACGCAG-GGGGGATCCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACTAGCTGAGCGCC
*
17248551 CGCACGCTCGTTTCATGGGTT-GACTTAGGCA
128 CGCACGCTCGTTTCGTGGGTTAG-CTTAGGCA
* * * *
17248582 TACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGCCA-CAGGATCGACAGT
1 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGG-TAGCAGGATCGACAGC
* * * * *
17248646 ACGTAGGGGGGA-CCGGTCGGTCCCCGGCTTGCACATTCTGCCTCTCCG-TTCGGCTGAGCAG-C
65 ACGCAGGGGGGATCCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACT-AGCTGAGC-GCC
*
17248708 CGCACGCTCATTTCGTGGGTTAGCTTAGGCA
128 CGCACGCTCGTTTCGTGGGTTAGCTTAGGCA
**
17248739 TACGGAGTTCATTCTAAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17248763 CCCCAGTTGG
Statistics
Matches: 273, Mismatches: 56, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 124 0.45
158 20 0.07
159 34 0.12
160 84 0.31
161 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCA
CGCAGGGGGGATCCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACTAGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTAGCTTAGGCA
Found at i:17248814 original size:12 final size:12
Alignment explanation
Indices: 17248794--17248826 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
17248784 TGGCAGTATT
*
17248794 ATCGACAGCGGG
1 ATCGGCAGCGGG
17248806 ATCGGCAGCGGG
1 ATCGGCAGCGGG
17248818 ATCGGCAGC
1 ATCGGCAGC
17248827 ACACAGAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.42, T:0.09
Consensus pattern (12 bp):
ATCGGCAGCGGG
Found at i:17249289 original size:26 final size:26
Alignment explanation
Indices: 17249259--17249311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17249249 GTTGGCTTAG
17249259 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
*
17249285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
17249311 G
1 G
17249312 ATTGGTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:17249486 original size:26 final size:26
Alignment explanation
Indices: 17249456--17249505 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17249446 GTTGACTTAG
17249456 GCATACAGAGTTCA-TCCCTAGTCTGA
1 GCATACAGAGTTCATTCCC-AGTCTGA
*
17249482 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
17249506 AAGATCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:17249487 original size:197 final size:197
Alignment explanation
Indices: 17249152--17249510 Score: 549
Period size: 197 Copynumber: 1.8 Consensus size: 197
17249142 GGGTTACGGT
* * *
17249152 AGCAGGATCGACAGCATGCAGGGGGGGATTGGGTCGATCCACGGCTTGCGCAATCTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGGACTGGGCCGATCCACGGCTTGCGCAATCTACCTCTCCG
* * * * *
17249217 ATAGGTTGAACGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTC
66 ACAGGATGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATCCCATGTC
17249282 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGTTTGGATTGAGGGTTGCGACAATAGGACCA
131 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGTTTGGATTGAGGGTTGCGACAATAGGACCA
17249347 GC
196 GC
* * *
17249349 AGCAGGATCGACAGCACGCAGGGGGGGACTGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGGACTGGGCCGATCCACGGCTTGCGCAATCTACCTCTCCG
* ** * *
17249414 ACCGGATGTGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-TAGT
66 ACAGGATGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATCCCAT-GT
*
17249478 CTGAGCATACGGAGTTCATTCCCAGTCTAAGAT
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
17249511 CTAATCGGAC
Statistics
Matches: 144, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
196 1 0.01
197 143 0.99
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (197 bp):
AGCAGGATCGACAGCACGCAGGGGGGGACTGGGCCGATCCACGGCTTGCGCAATCTACCTCTCCG
ACAGGATGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATCCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGTTTGGATTGAGGGTTGCGACAATAGGACCA
GC
Done.