Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 119 of 138
Found at i:17249988 original size:26 final size:26
Alignment explanation
Indices: 17249958--17250010 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17249948 GTTGGCTTTG
17249958 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17249984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17250010 G
1 G
17250011 ATCATACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17250111 original size:185 final size:185
Alignment explanation
Indices: 17249799--17250170 Score: 500
Period size: 185 Copynumber: 2.0 Consensus size: 185
17249789 GTTGACATAG
* * * * *
17249799 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCCAGGGTTGCGGCACCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCCAGGGTTGCGACACCAAGATGGACA
* * * *
17249864 GCACGCAGGGGGGGATAGGGCCAGTCCCCAGCTTATGCATTCTGCCTCTCCGGCCGGCTAAGCGC
66 GCACACAGAGGGGGACAGGGCCAGTCCCCAGCTTATGCATTCTACCTCTCCGGCCGGCTAAGC-C
* * *
17249929 C-CGCATGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAA
130 CTCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
17249984 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCAAACCGAGGGTTGCGACACCAAGATCGGA-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCCAGGGTTGCGACACCAAGAT-GGAC
* * * * *
17250048 AGCACACAGAGGGGGACCGGGTC-GATCCTC-GACTTGTGCATTCTACCTCTTCGGCCGGCTAAG
65 AGCACACAGAGGGGGACAGGGCCAG-TCCCCAG-CTTATGCATTCTACCTCTCCGGCCGGCTAAG
*
17250111 CCCTCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CCCTCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
17250169 GC
1 GC
17250171 CCCAGCCAAA
Statistics
Matches: 163, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
184 4 0.02
185 157 0.96
186 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCCAGGGTTGCGACACCAAGATGGACA
GCACACAGAGGGGGACAGGGCCAGTCCCCAGCTTATGCATTCTACCTCTCCGGCCGGCTAAGCCC
TCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:17250369 original size:356 final size:355
Alignment explanation
Indices: 17249894--17250702 Score: 839
Period size: 356 Copynumber: 2.3 Consensus size: 355
17249884 CCAGTCCCCA
* * * * * * *
17249894 GCTTATGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTTGG
1 GCTTACGCATTATGCCTCTACGGCCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
* * *
17249959 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAAACC
66 CATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
* * *
17250024 GAGGGTTGCGACACCAAGATCGGA-AGCACACAGAGGGGGACCGGGTCGATCCTC-GACTTGTGC
131 AAGGGTTGCGACACCAAGATC-GACAGCACACAG-GGGGGACCAGGTCGATCCTCAG-CTTGCGC
* * *
17250087 ATTCTACCTCTTCGGCCGGCTAAGC-CCTCGCACGCTCGTTTCGTGGGTTAGCTT-AGGCATACG
193 ATTCTACCTCTTCGGCCGGCTAAGCGCC-CGCACGCCCATTTCATGGGTTAGCTTAAGG-ATACG
17250150 GAGTTCATTCCATGTCTA-AGCCCCAGCCAAAACGAGGGTTATGGCAGCAAGACTGACAGCGAGA
256 GAGTTCATTCCATGTCTACA-CCCCAGCCAAAACGAGGGTTATGGCAGCAAGACTGACAGCGAGA
17250214 TTGATAGCATACAGAGGGTGATTGGGCTGATCCCTG
320 TTGATAGCATACAGAGGGTGATTGGGCTGATCCCTG
* * * * *
17250250 GCTTACGCATTATGCCTCTATGGTCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTACGCATTATGCCTCTACGGCCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
* * * **
17250315 CATATGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGAAC
66 CATACGGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAAC
* * ** * ***
17250379 CAAGGGTTGTGGCAGTAGGATCGACAGCATGTAGGGGGGACCAGGTCGATCCTCAGCTTGCGCAT
130 CAAGGGTTGCGACACCAAGATCGACAGCACACAGGGGGGACCAGGTCGATCCTCAGCTTGCGCAT
* * * * * * *
17250444 TCTTCCTCTTCGGTCGGTTGAGCGCCCGGACGCCCATTTCATGGGTTGGCTTAAGGATAGGGAGT
195 TCTACCTCTTCGGCCGGCTAAGCGCCCGCACGCCCATTTCATGGGTTAGCTTAAGGATACGGAGT
* * ** * *
17250509 TCATTCCATGTCTACACCCCAGCCAGACCGAGGGTTATGGCAGCGGGACT-AGCAGCACACAGAG
260 TCATTCCATGTCTACACCCCAGCCAAAACGAGGGTTATGGCAGCAAGACTGA-CAG--C-GAGAT
* * ** * *
17250573 GGACTAGCA-ACACGCAGAGTGGGACCGAG-TCGATCCCCG
321 TGA-TAGCATACA-G-AG-G-GTGATTGGGCT-GATCCCTG
* ** * *
17250612 GCTTACGCATTATGCCTCTTCGATCGGCTCAGCG-CCAGAACGCTCGTTTCATGGGTTGACTTAG
1 GCTTACGCATTATGCCTCTACGGCCGGCTAAGCGCCCA-CACGCTCGTTTCATGGGTTGACTTAG
*
17250676 GCATACAGAGTTCATTCCCA-GTCTAAG
65 GCATACGGAGTTCA-TCCCATGTCTAAG
17250703 ATCGAATTGG
Statistics
Matches: 373, Mismatches: 62, Indels: 30
0.80 0.13 0.06
Matches are distributed among these distances:
354 1 0.00
355 124 0.33
356 134 0.36
357 4 0.01
358 8 0.02
359 6 0.02
360 2 0.01
361 5 0.01
362 88 0.24
363 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (355 bp):
GCTTACGCATTATGCCTCTACGGCCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACC
AAGGGTTGCGACACCAAGATCGACAGCACACAGGGGGGACCAGGTCGATCCTCAGCTTGCGCATT
CTACCTCTTCGGCCGGCTAAGCGCCCGCACGCCCATTTCATGGGTTAGCTTAAGGATACGGAGTT
CATTCCATGTCTACACCCCAGCCAAAACGAGGGTTATGGCAGCAAGACTGACAGCGAGATTGATA
GCATACAGAGGGTGATTGGGCTGATCCCTG
Found at i:17250577 original size:19 final size:19
Alignment explanation
Indices: 17250553--17250591 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
17250543 TTATGGCAGC
*
17250553 GGGACTAGCAGCACACAGA
1 GGGACTAGCAACACACAGA
*
17250572 GGGACTAGCAACACGCAGA
1 GGGACTAGCAACACACAGA
17250591 G
1 G
17250592 TGGGACCGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.33, T:0.05
Consensus pattern (19 bp):
GGGACTAGCAACACACAGA
Found at i:17250884 original size:26 final size:26
Alignment explanation
Indices: 17250834--17250886 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17250824 GTTGCCTTAG
* *
17250834 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17250860 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17250886 G
1 G
17250887 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17251074 original size:26 final size:26
Alignment explanation
Indices: 17251044--17251096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17251034 GTTAACTTAG
*
17251044 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
* *
17251070 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATCCCCAGTCTAA
17251096 G
1 G
17251097 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGATCATCCCCAGTCTAA
Found at i:17251497 original size:11 final size:11
Alignment explanation
Indices: 17251483--17251512 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
17251473 ATCGAGGCAC
17251483 CATCGTCGGAG
1 CATCGTCGGAG
*
17251494 CATCATCGGAG
1 CATCGTCGGAG
17251505 CATCGTCG
1 CATCGTCG
17251513 AAGAGCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17252602 original size:26 final size:26
Alignment explanation
Indices: 17252566--17252621 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
17252556 TCGGTTGGCT
17252566 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATATGGAGTTCATTCCCA-GTC
17252592 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
17252618 TAAG
1 TAAG
17252622 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:17253324 original size:26 final size:26
Alignment explanation
Indices: 17253287--17253339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17253277 GTTGACATAG
17253287 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
17253313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17253339 G
1 G
17253340 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17253603 original size:159 final size:158
Alignment explanation
Indices: 17253313--17253814 Score: 566
Period size: 158 Copynumber: 3.2 Consensus size: 158
17253303 CCCAGTCTAA
* *
17253313 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGGC
* * ** * * *
17253377 AGCACGTATGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGC
66 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGACCG-CTAAGTGC
* *
17253442 CCGCACGCACGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
17253471 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCATGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGG
* * *
17253534 CAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGACCAGCTCAGT
65 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGACC-GCTAAGT
* * *
17253599 GCCCGCACGCTTGTTTTGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
17253630 GCATACGAAGTTCATTCCCAT-TCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * * * *
17253694 AGCATGCAGGGGGTATCAAGTCGGA-CCCCGACTTACGCATTCTGCCTTTTTGACCGGCTAAGCG
66 AGCACGCAGGGGGGATC-GGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGACC-GCTAAGTG
*
17253758 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17253788 GCATACGGAGTTAATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCATGTCTAAG
17253815 CATATGGAGT
Statistics
Matches: 286, Mismatches: 50, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.02
158 144 0.50
159 130 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGGC
AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGCTAAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17253824 original size:26 final size:26
Alignment explanation
Indices: 17253788--17253840 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17253778 GTTGGCTTAG
17253788 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
17253814 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17253840 G
1 G
17253841 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17254060 original size:513 final size:501
Alignment explanation
Indices: 17253247--17254210 Score: 1279
Period size: 513 Copynumber: 1.9 Consensus size: 501
17253237 CCTCTTTGGT
* * *
17253247 CGGCTGAGCGTCCACACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGCTAAGCGCCCACACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTAATCCCCAGTCTA
* * *
17253312 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGC
* * *
17253377 AGCACGTATGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGC
131 AGCACGTATGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCCAGCCGACTGAGTGC
*
17253442 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCG
196 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCG
17253507 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTAC
261 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTAC
* * * * * * *
17253572 GCATTATGCCTCTTCGACCAGCTCAGTGCCCGCACGCTT-GTTTTGTGGGTTGACTTAGGCATAC
326 ACATTATGCCTCTCCGACCAGCTCAGCGCCCGCAC-ATTCATTTTATGGGTTAACTTAGGCATAC
* * * * *
17253636 -GAAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATTGACAGCATG
390 AGAA-TTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATG
17253700 CAGGGGGTATCAAGTCGGACCCCGACTTACGCATTCTGCCTTTTTGAC
454 CAGGGGGTATCAAGTCGGACCCCGACTTACGCATTCTGCCTTTTTGAC
* * * * *
17253748 CGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTAAT-TCCATGTCT
1 CGGCTAAGCGCCCACACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTAATCCCCA-GTCT
* * *
17253812 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGACCAG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACC-G
* *
17253877 CAGCAGCATCGGCTGCACATCTGAGGGGACCGGGCTGATCCCCGACTTGTGCATTCT-ACTCTCT
129 --GCAGCA-C-G-T----A--TG-GGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCC
* * *
17253941 AGCCGGCTGAGTGCCCGCTCGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
182 AGCCGACTGAGTGCCCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * *
17254006 CTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGATCGGCAGCACACAGAGGGGGATCGGGTC
247 CTAAGACCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCC
* ** * * * *
17254071 GATCCCGGGGTTGCACATTATGCCTCTCCGACTAGCTCAGCGCCTGCACATTCATTTTATGTGTT
312 GATCCCCGACTTACACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACATTCATTTTATGGGTT
* * ***
17254136 AACTTAGGCATACAGAATTCAATGCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCAGG
377 AACTTAGGCATACAGAATTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
17254201 ATCGACAGCA
442 ATCGACAGCA
17254211 CATAGCGGCA
Statistics
Matches: 394, Mismatches: 53, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
500 3 0.01
501 110 0.28
502 1 0.00
504 5 0.01
505 1 0.00
506 1 0.00
507 1 0.00
511 1 0.00
512 2 0.01
513 235 0.60
514 34 0.09
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (501 bp):
CGGCTAAGCGCCCACACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTAATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGC
AGCACGTATGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCCAGCCGACTGAGTGC
CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCG
GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTAC
ACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACATTCATTTTATGGGTTAACTTAGGCATACA
GAATTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCA
GGGGGTATCAAGTCGGACCCCGACTTACGCATTCTGCCTTTTTGAC
Found at i:17254249 original size:513 final size:500
Alignment explanation
Indices: 17253247--17254326 Score: 1270
Period size: 513 Copynumber: 2.1 Consensus size: 500
17253237 CCTCTTTGGT
* * * * * *
17253247 CGGCTGAGCGTCCACACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGCTGAGCGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTA
* * *
17253312 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGGT
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGC
* * *
17253377 AGCACGTATGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGC
130 AGCACGTATGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCCAGCCGACTGAGTGC
*
17253442 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCG
195 CCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCG
17253507 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTAC
260 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTAC
* * * * * * *
17253572 GCATTATGCCTCTTCGACCAGCTCAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACG
325 ACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGATTATTTTATGGGTTAACTTAGGCATACG
* * * * * **
17253637 AAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATTGACAGCATGCA
390 AAGTTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* ** * * * * * *
17253702 GGGGGTATCAAGTCGGACCCCGACTTACGCATTCTGCCTTTTTGAC
455 GCGGCAATCAAGGCCGACCACGACTTACGCATTCTACCTCTTCGAC
* * *
17253748 CGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTA
1 CGGCTGAGCGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTA
* * *
17253813 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGACCAGC
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACC-G-
* *
17253878 AGCAGCATCGGCTGCACATCTGAGGGGACCGGGCTGATCCCCGACTTGTGCATTCT-ACTCTCTA
128 -GCAGCA-C-G-T----A--TG-GGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCCA
* * *
17253942 GCCGGCTGAGTGCCCGCTCGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
182 GCCGACTGAGTGCCCGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * * *
17254007 TAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGATCGGCAGCACACAGAGGGGGATCGGGTCG
247 TAAGACCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCG
* ** * * * *
17254072 ATCCCGGGGTTGCACATTATGCCTCTCCGACTAGCTCAGCGCCTGCAC-ATTCATTTTATGTGTT
312 ATCCCCGACTTACACATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGATT-ATTTTATGGGTT
* * ***
17254136 AACTTAGGCATACAGAA-TTCAATGCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCAG
376 AACTTAGGCATAC-GAAGTTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAG
* * * ** *
17254200 GATCGACAGCACATAGCGGCAATC-GGGCCGATCCATGACTTGTGCATTCTACCTCTTCGAT
440 GATCGACAGCACACAGCGGCAATCAAGGCCGA-CCACGACTTACGCATTCTACCTCTTCGAC
* * * **
17254261 CGGTTGAGC-ACGGCACGCTCGTTTCGTGCATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGGCTGAGCGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTA
17254325 AG
65 AG
17254327 ATCAGATCGG
Statistics
Matches: 483, Mismatches: 78, Indels: 25
0.82 0.13 0.04
Matches are distributed among these distances:
500 3 0.01
501 110 0.23
502 1 0.00
504 5 0.01
505 1 0.00
506 1 0.00
507 1 0.00
511 1 0.00
512 53 0.11
513 273 0.57
514 34 0.07
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (500 bp):
CGGCTGAGCGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCGGCA
GCACGTATGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGACTCTCCAGCCGACTGAGTGCC
CGCACGCACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCGG
ACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCCGACTTACA
CATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGATTATTTTATGGGTTAACTTAGGCATACGA
AGTTCAATCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAG
CGGCAATCAAGGCCGACCACGACTTACGCATTCTACCTCTTCGAC
Found at i:17254619 original size:26 final size:26
Alignment explanation
Indices: 17254589--17254641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254579 GTTGGCTTAG
* **
17254589 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17254615 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17254641 G
1 G
17254642 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17254868 original size:26 final size:26
Alignment explanation
Indices: 17254838--17254890 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17254828 GTTGGCTTAG
17254838 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
17254864 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17254890 G
1 G
17254891 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17255077 original size:26 final size:26
Alignment explanation
Indices: 17255048--17255100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17255038 GTTGACTTAG
17255048 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
17255074 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17255100 G
1 G
17255101 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17255418 original size:26 final size:26
Alignment explanation
Indices: 17255389--17255441 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17255379 GTTGGCTTAG
*
17255389 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17255415 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17255441 G
1 G
17255442 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17256138 original size:26 final size:26
Alignment explanation
Indices: 17256109--17256187 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
17256099 GTTGACTTAG
*
17256109 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
17256135 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
17256161 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
17256187 G
1 G
17256188 AACGGATCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 45 0.92
27 4 0.08
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:17256667 original size:26 final size:26
Alignment explanation
Indices: 17256637--17256689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17256627 GTTGGCTTAG
17256637 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
17256663 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17256689 G
1 G
17256690 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17257054 original size:26 final size:26
Alignment explanation
Indices: 17257004--17257056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17256994 GTTGGCTTAG
*
17257004 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
17257030 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
17257056 G
1 G
17257057 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:17257322 original size:364 final size:365
Alignment explanation
Indices: 17256597--17257322 Score: 809
Period size: 364 Copynumber: 2.0 Consensus size: 365
17256587 GCTCTACAAC
* * * *
17256597 CGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * * * * *
17256662 AGCATACGGAGTTTATTCCTAGTCTAAGATCAGACCGGATCGAGGTTTACGACAATAAGACCAGC
66 AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTA-GACAATAAGA-CAGC
* * * * * * ** *
17256727 AGTAGGATCGGTAGCATGCGGGGGGGATCGGGTCTGTCCCTGGTTTGCGCATTCTACCTCTCCGG
129 AGCAAGATCGATAGCATGCAGGGGGGACCGGGTCCGTCCCCAGCTTGCGCATTCTACCTCTCCGG
* * *
17256792 CTAATTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCT
194 CTAACTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCT
* * * * *
17256857 GAGCCCCAGCCGAACCTAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCAGCAACACGTAGAGGG
259 AAGCCCCAGCCGAACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCAGCAACACGCAGAAGA
* * * * *
17256922 GGATCGGGCTGATCTTCGACTTGCACGTTCTGCCTCTCCGAT
324 GGACCAGGCTGATCTCCGACTTGCACATTATGCCTCTCCGAT
17256964 CGGCTGAGCACCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
** * **
17257029 AGCATACAGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGGGTT-GACGGTAGCAGA-AGC
66 AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAGACAATA--AGACAGC
* *** * *
17257092 AGCAAGATCGATAGCATGTAGGGGGGACCGGG-CCGATCCCCAGCTTGTTTATTCTGCCTCTCCA
129 AGCAAGATCGATAGCATGCAGGGGGGACCGGGTCCG-TCCCCAGCTTGCGCATTCTACCTCTCCG
** * * * *
17257156 G-TCGGCTGAGTGCCCACACGCTCGTTT-GTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGT
193 GCT-AACTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGT
* * * * * **
17257219 CTAAGCCCCAGCCGGACCGATGGTTGTGGTAGCAGGACCGGTAGTGGGATC-GACAGTACGCAGA
257 CTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCAG-CAACACGCAGA
**
17257283 AGAGGACCAGGCTGATCCTCCG-CTTGTGCATTATGCCTCT
321 AGAGGACCAGGCTGAT-CTCCGACTTGCACATTATGCCTCT
17257323 TCGGTCAGCC
Statistics
Matches: 295, Mismatches: 58, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
363 1 0.00
364 115 0.39
365 76 0.26
367 103 0.35
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (365 bp):
CGGCTGAGCACCCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAGACAATAAGACAGCAG
CAAGATCGATAGCATGCAGGGGGGACCGGGTCCGTCCCCAGCTTGCGCATTCTACCTCTCCGGCT
AACTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
GCCCCAGCCGAACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCAGCAACACGCAGAAGAGG
ACCAGGCTGATCTCCGACTTGCACATTATGCCTCTCCGAT
Found at i:17258258 original size:26 final size:26
Alignment explanation
Indices: 17258222--17258274 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17258212 GTTGACTTAT
17258222 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17258248 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17258274 G
1 G
17258275 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17258603 original size:158 final size:158
Alignment explanation
Indices: 17258377--17258678 Score: 340
Period size: 158 Copynumber: 1.9 Consensus size: 158
17258367 ACTGAGCGAC
* * * * * *
17258377 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTAATCGG
1 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCTAATCAG
* ** * * * * *
17258442 ACCGGGGGTTGTGGCAGCGGGATCGACAGCACGCAAAGGGGGA-CAGGTCGATCCTCGACTGGCG
66 ACCGAGGGTTGCAGCAGCAGGACCAACAGCACGC-AAGGGGGACCAGGCCGATCCCCGACTGGCG
17258506 CATTATGCCTCTCCGCCCGGGTCAGCGCT
130 CATTATGCCTCTCCGCCCGGGTCAGCGCT
** * *
17258535 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTGATTCC-TAGTCTAAGATC-AGATC
1 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAGACCTA-ATC
* * * **
17258598 AGACCGAGGGTTGCAGCAGTAGGACCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTTC
64 AGACCGAGGGTTGCAGCAGCAGGACCAACAGCACGCAAGGGGGACCAGGCCGATCCCCGACTGGC
*
17258663 GCATTCTGCCTCTCCG
129 GCATTATGCCTCTCCG
17258679 ATCGATTGAG
Statistics
Matches: 117, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 9 0.08
158 108 0.92
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCTAATCAG
ACCGAGGGTTGCAGCAGCAGGACCAACAGCACGCAAGGGGGACCAGGCCGATCCCCGACTGGCGC
ATTATGCCTCTCCGCCCGGGTCAGCGCT
Found at i:17259678 original size:159 final size:158
Alignment explanation
Indices: 17259473--17259876 Score: 398
Period size: 159 Copynumber: 2.5 Consensus size: 158
17259463 CTCGGCTTAT
* * * ** * * *
17259473 GCATTCTACCTCTCCGGCCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
1 GCATTATACCTCTCCGGCCAGCTCAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
* * ** *
17259538 GAGTTCATTCCATGTCAAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAAGATCGACAGCATGCA
66 GAGTTCATTCCATGTC-AAGCCCCAACCGGACCGAGGGTTGCAGTAGCAAGATCGACAACATGCA
*
17259603 GAGGGGGACCGGATTGAT-CCTCAGCTTGC
130 GAGGGGGACCGGATCGATGCC-CAGCTTGC
* * * * * * ** *
17259632 GCATTATGCCTCTCCGGCTAGTTCAACGCCCGTAGGCTCATTTCATGGGTTAACTTAGGCATATG
1 GCATTATACCTCTCCGGCCAGCTCAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
** * * *
17259697 GAGTTCATTCCCAGTGT-AAGATCGAATCGGACCGAGGGTTGCAGTAGCAGGATCGACAACATGC
66 GAGTTCATT-CCA-TGTCAAGCCCCAACCGGACCGAGGGTTGCAGTAGCAAGATCGACAACATGC
* * *
17259761 AGAGGGGGATCGGATCGGTGCCCGGCTTGC
129 AGAGGGGGACCGGATCGATGCCCAGCTTGC
* * * * * * * *
17259791 GTATTCTACCTCTCCGGCCAGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGACATACG
1 GCATTATACCTCTCCGGCCAGCTCAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
17259856 GAGTTCATTCCATGTCTAAGC
66 GAGTTCATTCCATGTC-AAGC
17259877 ATACGGAGTT
Statistics
Matches: 192, Mismatches: 48, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 3 0.02
159 178 0.93
160 5 0.03
161 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATTATACCTCTCCGGCCAGCTCAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCAAGCCCCAACCGGACCGAGGGTTGCAGTAGCAAGATCGACAACATGCAG
AGGGGGACCGGATCGATGCCCAGCTTGC
Found at i:17259886 original size:26 final size:26
Alignment explanation
Indices: 17259850--17259901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17259840 TTGGCTTAGA
17259850 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
17259876 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17259902 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17260048 original size:184 final size:185
Alignment explanation
Indices: 17259690--17260060 Score: 426
Period size: 184 Copynumber: 2.0 Consensus size: 185
17259680 GTTAACTTAG
* * * *
17259690 GCATATGGAGTTCATTCCCAGTGTAAGATCGAATCGGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGATTGCAGTAGCAGGATCGACA
* * * * * * * *
17259755 ACATGCAGAGGGGGATCGGATCGGTGCCCGGCTTGCGTATTCTACCTCTCCGGCCAGCTGAGCAC
66 ACACGCAGAGAGGGACCGGATCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCAC
* *
17259820 CTGCACGCTCGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
131 CTGCACACTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
* * * **
17259875 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCAAGGATTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATC-GGACCAAGGATTGCAGTAGCAGGATCGAC
* * * ** *
17259939 AGCACGCAGA-AGGGACCAGG-TCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGT
65 AACACGCAGAGAGGGACC-GGATCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAGC
* * * *
17260002 GCCTGCACATTCGTTTCATGGGTTGGCTTAGGCATA-GGTTGTTCATTCCATGTCTAA
129 ACCTGCACACTCGTTTCATGGGTTGGCTTAGACATACGG-AGTTCATTCCATGTCTAA
17260059 GC
1 GC
17260061 CCCAGCCGGA
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 89 0.58
185 63 0.41
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGATTGCAGTAGCAGGATCGACA
ACACGCAGAGAGGGACCGGATCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCAC
CTGCACACTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAA
Found at i:17260228 original size:158 final size:158
Alignment explanation
Indices: 17259875--17260237 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 158
17259865 CCATGTCTAA
* * * * * * * *
17259875 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAGGATTGCGGTAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAAGACCGGCA
* * * * *
17259940 GCACGCAGAAGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGTGCC
66 GCACGCAGAAGGGACCAGGACGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAATGCC
* * *
17260005 TGCACATTCGTTTCATGGGTTGGCTTAG
131 TGCACACTCATTTCATGGGTTGACTTAG
* ** * ** *
17260033 GCATAGGTTGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCAAGGGTTGCGGCAGCAAGACCGG
* * **
17260096 CAGCATGCAGACGGAGACC-GGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTTGGCTCAA
64 CAGCACGCAGAAGG-GACCAGGAC-GATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAA
**
17260160 TGCC-GCATGCTCATTTCATGGGTTGACTTAG
127 TGCCTGCACACTCATTTCATGGGTTGACTTAG
* * *
17260191 GCATACGAAATTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
17260238 ACGACAGTAG
Statistics
Matches: 162, Mismatches: 37, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
157 5 0.03
158 111 0.69
159 46 0.28
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAAGACCGGCA
GCACGCAGAAGGGACCAGGACGATCCCCGGCTTACGCATTATGCCTCTCCGACTGGCTCAATGCC
TGCACACTCATTTCATGGGTTGACTTAG
Found at i:17260387 original size:26 final size:26
Alignment explanation
Indices: 17260350--17260402 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17260340 GTTGACTTTG
*
17260350 GCATACGGAGTTCAGCCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
**
17260376 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
17260402 G
1 G
17260403 ATCAAACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGCCCCAGTCTAA
Found at i:17260431 original size:501 final size:497
Alignment explanation
Indices: 17259276--17260854 Score: 1813
Period size: 501 Copynumber: 3.2 Consensus size: 497
17259266 CACCCGTTCG
* * * * *
17259276 ATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
**
17259341 ACTTAGGCATAAAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACGGAGTTCA-CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * *
17259406 CCGGACCGAGGGTTGCGGCAGCAGGATTGGTAGCATGTAGGGGGGATCGAGCCGATCCTCGGCTT
130 CTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGAAGGAGGGACCG-GCCGATCCCCGGCTT
* * * * * *
17259471 ATGCATTCTACCTCTCCGGCCGGCTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
194 ACGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
* * * * *
17259536 GGGAGTTCATTCCATGTCAAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCAAGATCGACAGCATG
259 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCATG
* * * * * * * *
17259601 CAGAGGGGGACCGGATTGATCCTCAGCTTGCGCATTATGCCTCTCCGGCTAGTTCAACGCCCGTA
324 CAGA-GGAGACCGGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGGATGGCTCAACGCCCGCA
* * * * * * *
17259666 GGCTCATTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCGAATCGGACCG
388 TGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCG
* * * * * *
17259731 AGGGTTGC-AGTAGCAGGATCGACAACATGCAGAGGGGGATCGGATCG
453 AGGGTTGCGA-CAGTAGGATCGACAGCACGCAG-GGGGGATCGG-GCC
* * * * * *
17259778 GTGCCCGGCTTGCGTATTCTACCTCTCCGGCCAGCTGAGCACCTGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * ** *
17259843 GCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACGGAGTTCACCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
17259908 CTGGA-TCAAGGATTGCGGTAGCAGGATCGGTAGCACGCAGAAGGGACCAGGTCGATCCCCGGCT
130 CTGGACT-GAGGGTTGCGGTAGCAGGATCGGTAGCACGAAGGAGGGACC-GGCCGATCCCCGGCT
* * **
17259972 TACGCATTCTGCCTCTTCGACTGGCTGAGTGCCTGCACATTCGTTTCATGGGTTGGCTTAGGCAT
193 TACGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCAT
** *
17260037 AGGTTGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCGGCAGCAT
258 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCAT
* * *
17260102 GCAGACGGAGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTTGGCTCAATG-CCGC
323 GCAGA-GGAGACCGGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGGATGGCTCAACGCCCGC
* *
17260166 ATGCTCATTTCATGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGATTGGACCGGACC
387 ATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC
* *
17260231 GAGGGTTACGACAGTAGGATCGATAGCACGCAGGGGGTGATCGGGCC
452 GAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGG-GATCGGGCC
* * * *
17260278 ATTCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGTTAAGCACCCGCACGCTCATTTCGTGGGTT
1 A-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* **
17260343 GACTTTGGCATACGGAGTTCAGCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
65 GACTTAGGCATACGGAGTTCA-CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGG
** ** ** * *
17260408 ACTAAACTGAGGGTTAAGGTAGCAGGATCGACAGCACGAAGGAGGAACCGGGCCGATCCCCGACT
129 ACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGAAGGAGGGACC-GGCCGATCCCCGGCT
* * * * *
17260473 TGCACATTTTGCCTCTCCGA-TCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCA
193 TACGCATTCTGCCTCTCCGACT-GGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCA
* ** *
17260537 TAGGGGGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCA
257 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCA
* * * * * * *
17260602 TGCA-AAGATGGACCGG-GTCGATCTCTGGCTTGCGCATTATGCCTCTACGGACGGCTCAGCGCC
322 TGCAGAGGA--GACCGGACT-GATCCCCGGCTTGCGCATTATGCCTCTCCGGATGGCTCAACGCC
* * **
17260665 CGCATGCTCATTTCGTGGGTTGATTTAATCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
384 CGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
* * *
17260730 ACCGAGGGTTGCGACAGTAAGATCGACAGCACGCATGGGGGA-CAGGGTCG
449 ACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGATC-GGG-CC
* ** * * *
17260780 ATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTTGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* *
17260845 GCTGAGGCAT
66 ACTTAGGCAT
17260855 GTAGAGTTCA
Statistics
Matches: 904, Mismatches: 158, Indels: 31
0.83 0.14 0.03
Matches are distributed among these distances:
499 2 0.00
500 9 0.01
501 471 0.52
502 421 0.47
503 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (497 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCACCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
TGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGAAGGAGGGACCGGCCGATCCCCGGCTTAC
GCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGCATGCA
GAGGAGACCGGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGGATGGCTCAACGCCCGCATGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
GTTGCGACAGTAGGATCGACAGCACGCAGGGGGGATCGGGCC
Found at i:17260862 original size:158 final size:164
Alignment explanation
Indices: 17260700--17261024 Score: 378
Period size: 170 Copynumber: 2.0 Consensus size: 164
17260690 TAATCATACG
* * *
17260700 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCG-A-G-GGTTGC-GA-CAG-TAAGATCGACAG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTGGTAGCAGACCAGACAAGATCGACAG
* * * *
17260759 CACGCATGGGGGA-CAGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCAC
66 CACACAGGGGGGATC-GGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCG-GCAGACTGAGCAC
** *
17260822 CCGCACGCTTGTTTCATGGGTTGGCTGAGGCATGTA
129 CCGCACGCTCATTTCATGGGTTGGCTAAGGCATGTA
* * *
17260858 GAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAAGGTTACGGTAGCAGGACCAGCAACAAGAT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGG-T--GGTAGCA-GACCAG--ACAAGAT
*
17260923 CGACAGCACACAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGGCAGACTGA
60 CGACAGCACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCAGACTGA
* *
17260988 GCGCCCGTACGCTCATTTCATGGGTTGGCTAAGGCAT
125 GCACCCGCACGCTCATTTCATGGGTTGGCTAAGGCAT
17261025 ACGGAGTTTA
Statistics
Matches: 137, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
158 30 0.22
159 1 0.01
160 1 0.01
164 5 0.04
166 2 0.01
167 3 0.02
169 1 0.01
170 93 0.68
171 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (164 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTGGTAGCAGACCAGACAAGATCGACAG
CACACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCAGACTGAGCACCC
GCACGCTCATTTCATGGGTTGGCTAAGGCATGTA
Found at i:17261076 original size:170 final size:170
Alignment explanation
Indices: 17260748--17261080 Score: 404
Period size: 170 Copynumber: 2.0 Consensus size: 170
17260738 TTGCGACAGT
* * * *
17260748 AAGATCGACAGCACGCATGGGGGACAGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCG
1 AAGATCGACAGCACACAGGGGGGACAGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGAGCG
** * **
17260813 ACTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTGAGGCATGTAGAGTTCATTCCTAGTCTAAG
66 ACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTAAGGCATACAGAGTTCATTCCTAGTCTAAG
* * * *
17260878 ATCGGATCGGATCGAAGGTTACGGTAGCAGGACCAGCAAC
131 ACCAGATCGAACCGAAGGTTACGGTAGCAGGACCAGCAAC
*
17260918 AAGATCGACAGCACACAGGGGGGATC-GGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCG-GC
1 AAGATCGACAGCACACAGGGGGGA-CAGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGAGC
* * * *
17260981 AGACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTAAGGCATACGGAGTTTATTCC-ATGTCT
65 -GACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTAAGGCATACAGAGTTCATTCCTA-GTCT
* * **
17261045 AAGCCCCAG-TCGAACCGAGGGTTGTGGTAGCAGGAC
128 AAG-ACCAGATCGAACCGAAGGTTACGGTAGCAGGAC
17261081 TGGTAGCGGG
Statistics
Matches: 137, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
169 2 0.01
170 132 0.96
171 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (170 bp):
AAGATCGACAGCACACAGGGGGGACAGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGAGCG
ACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTAAGGCATACAGAGTTCATTCCTAGTCTAAG
ACCAGATCGAACCGAAGGTTACGGTAGCAGGACCAGCAAC
Found at i:17261228 original size:26 final size:26
Alignment explanation
Indices: 17261192--17261244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17261182 GTTGACTTAG
17261192 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17261218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17261244 G
1 G
17261245 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17261404 original size:26 final size:25
Alignment explanation
Indices: 17261375--17261426 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17261365 TTTGGCTTAG
*
17261375 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCACTCCA-GTCTAA
17261401 GCATACGGAGTTCACTCCAGTCTAA
1 GCATACGGAGTTCACTCCAGTCTAA
17261426 G
1 G
17261427 TTTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCACTCCAGTCTAA
Found at i:17262483 original size:159 final size:159
Alignment explanation
Indices: 17262129--17262507 Score: 346
Period size: 159 Copynumber: 2.4 Consensus size: 159
17262119 TAAGCGTACA
* * * *
17262129 GAGTTCATTCCTAGT-TCAAGATTGAACCAGACTGAGGGTT-TCGACAGCTGGATCGGCAGCACG
1 GAGTTCATTCCTAGTCT-AAGATCGAACCGGACTGAGGGTTGTCGACAGCGGGATCGGCAGCACA
* ** * * * *
17262192 CAAGGGGGACCGAGCTAATCTCTGGCTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGACCGCAC
65 CAAGGGGGACCGAGCTAATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGACCGCAC
* *
17262257 GCCTGTTTCGTGGGTTGGCTTAGGCATAGG
130 GCCTGTTTCGTGGGTTGACTTAGGCATACG
* ** * ** *
17262287 GAGTTCAATCC-ATGTCTAAGCCCCAGTCGGA-TCGAGGGTTGT-GGCAGCGGGA-CTGGCAGCA
1 GAGTTCATTCCTA-GTCTAAGATCGAACCGGACT-GAGGGTTGTCGACAGCGGGATC-GGCAGCA
* * * * * *
17262348 CACAGAGGGGGACCGGGTTGATCCCCAGCTTGTGCATTATGCCTCTTCGATCGACTCAGC-ACCT
63 CACA-AGGGGGACCGAGCTAATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGACC-
*
17262412 GCACG-CTCGTTTCGTGGGTTGACTTATGCATACG
126 GCACGCCT-GTTTCGTGGGTTGACTTAGGCATACG
* * *
17262446 GAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTG-CGATAGCAGGG-TCGACAGCAC
1 GAGTTCATTCCTAGTCTAAGATCGAACCGGACTGAGGGTTGTCGACAGC-GGGATCGGCAGCAC
17262508 GTAGGGGGGA
Statistics
Matches: 171, Mismatches: 37, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
157 3 0.02
158 49 0.29
159 113 0.66
160 6 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCTAGTCTAAGATCGAACCGGACTGAGGGTTGTCGACAGCGGGATCGGCAGCACAC
AAGGGGGACCGAGCTAATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGACCGCACG
CCTGTTTCGTGGGTTGACTTAGGCATACG
Found at i:17262966 original size:500 final size:501
Alignment explanation
Indices: 17262022--17262988 Score: 1259
Period size: 500 Copynumber: 1.9 Consensus size: 501
17262012 TACCACCCGT
*
17262022 TCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGAG
1 TCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGAG
* * * *
17262087 TTGACTTAGGAATACAGAGTTCATCCCCAGTCTAAGCGTACAGAGTTCATTCCTAGTTCAAGATT
66 TTGACTTAGGAATACAGAGTTCATCCCCAGTCTAAGCATACAGAATTCATTCCCAGTTCAAGATC
* * * **
17262152 GAACCAGACTGAGGGTTTCGACAGCTGGATCGGCAGCACGCAAGGGGGACCGAGCTAATCTCTGG
131 GAACCAGACTGAAGGTTACGACAGCAGGATCGGCAGCACGCAAGGGGGACCGAGCTAATCTCCCG
* * * *
17262217 CTTATGCATTCTGCCTCTCCGGCCGGCTGAGCGACCGCACGCCTGTTTCGTGGGTTGGCTTAGGC
196 CTTATGCATTCTGCCTCTCCGACCGGCTAAGCGACCGCACGCCCGTTTCGTGAGTTGGCTTAGGC
* * * * *
17262282 ATAGGGAGTTCAATCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACTGGCAGC
261 ATAGGGAGTTCAATCCATGTCTAAGCCCCAGTCCGAACGAGGGTTGTGGCAACGGGACCGACAGC
* * * * *
17262347 ACACAGAGGGGGACCGGGTTGATCCCCAGCTTGTGCATTATGCCTCTTCGATCGACTCAGCACCT
326 ACACAGAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGCACCC
* * * * * * *
17262412 GCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA
391 GCACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGA
17262477 CTGAGGGTTGCGATAGCAGGGTCGACAGCACGTAGGGGGGACCAGG
456 CTGAGGGTTGCGATAGCAGGGTCGACAGCACGTAGGGGGGACCAGG
* * * * *
17262523 TCGATCCCCGGCTTACGCATCCTGCCTTTCTGGTCGGTTGAGTGCCCGTACGCTCGTTTCATCG-
1 TCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCAT-GA
** *
17262587 GTTGACTTAGGCAA-ATGGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAG-TCTAAG
65 GTTGACTTAGG-AATACAGAGTTCATCCCCAGTCTAAGCATACAGAATTCATTCCCAGTTC-AAG
* * * * * * * *
17262650 ATCGGACCGGATTGAAGGTTACGGCAGCAGGATTGGCAGCACGCAGGGGGGACCG-GGTCGATC-
128 ATCGAACCAGACTGAAGGTTACGACAGCAGGATCGGCAGCACGCAAGGGGGACCGAGCT-AATCT
* * *
17262713 CCCGCTTATGCATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGCCCGTTTCGTGAGTTGGCTT
192 CCCGCTTATGCATTCTGCCTCTCCGACCGGCTAAGCGACCGCACGCCCGTTTCGTGAGTTGGCTT
* *
17262778 AGGCATAGGGAGTTCATTTCATGTCTACA-CCCCA-TCCGAACTGAGGGTTGTGGCAACGGGACC
257 AGGCATAGGGAGTTCAATCCATGTCTA-AGCCCCAGTCCGAAC-GAGGGTTGTGGCAACGGGACC
* ** *
17262841 GACAGCACGCAGAGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCC-AGTC-AGTT
320 GACAGCACACAGAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGA-TCGA-CT
* * *
17262904 CAGCGCCCGCACACCCGTTTCGTTGGTTGAGTTAGGCATACGAAGTTCATTCCCAATCTAAGATC
383 CAGCACCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATC
*
17262969 GAATCGGACTGAGGGTTGCG
448 GAACCGGACTGAGGGTTGCG
17262989 GCAACAGGAT
Statistics
Matches: 398, Mismatches: 60, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
499 7 0.02
500 232 0.58
501 156 0.39
502 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (501 bp):
TCGATCCCCGACTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGAG
TTGACTTAGGAATACAGAGTTCATCCCCAGTCTAAGCATACAGAATTCATTCCCAGTTCAAGATC
GAACCAGACTGAAGGTTACGACAGCAGGATCGGCAGCACGCAAGGGGGACCGAGCTAATCTCCCG
CTTATGCATTCTGCCTCTCCGACCGGCTAAGCGACCGCACGCCCGTTTCGTGAGTTGGCTTAGGC
ATAGGGAGTTCAATCCATGTCTAAGCCCCAGTCCGAACGAGGGTTGTGGCAACGGGACCGACAGC
ACACAGAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTCAGCACCC
GCACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGA
CTGAGGGTTGCGATAGCAGGGTCGACAGCACGTAGGGGGGACCAGG
Found at i:17263007 original size:159 final size:157
Alignment explanation
Indices: 17262623--17263007 Score: 368
Period size: 159 Copynumber: 2.4 Consensus size: 157
17262613 CCCAGTCTAA
* * * * * * * *
17262623 GCATACGGAA-TTCATTCCCAGTCTAAGATCGGACCGGATTGAAGGTTACGGCAGCAGGATTGGC
1 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAACAGGATAGAC
* * * * *
17262687 AGCACGCAGGGGGGACCGGGTCGATCCCCGCTTATGCATTCTGCCTCTCCGATCGGCTAAGTGCC
65 AGCACGCAGGGGGGACCGAGTCGATCCCCGCTTACGCATTATGCCTCTCCGATCAGCTAAGCGCC
*
17262752 CGCACGCCCGTTTCGTGAGTTGGCTTAG
130 CGCACACCCGTTTCGTGAGTTGGCTTAG
* * * * * ** * * * **
17262780 GCATAGGGAGTTCATT-TCATGTCT-ACACCCCATCCGAACTGAGGGTTGTGGCAACGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAAT-CGGACTGAGGGTTGCGGCAACAGGATAGA
* * * *
17262843 CAGCACGCAGAGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTCC-AGTCAGTTCAG
64 CAGCACGCAG-GGGGGACCGAGTCGATCCC-CGCTTACGCATTATGCCTCTCCGA-TCAGCTAAG
17262907 CGCCCGCACACCCGTTTCGTTG-GTTGAG-TTAG
126 CGCCCGCACACCCGTTTCG-TGAGTTG-GCTTAG
* *
17262939 GCATACGAAGTTCATTCCCAATCTAAGATCGAATCGGACTGAGGGTTGCGGCAACAGGATAGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAACAGGATAGACA
17263004 GCAC
66 GCAC
17263008 ACAAGTGGGG
Statistics
Matches: 176, Mismatches: 42, Indels: 18
0.75 0.18 0.08
Matches are distributed among these distances:
156 8 0.05
157 44 0.25
158 19 0.11
159 95 0.54
160 10 0.06
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGGCAACAGGATAGACA
GCACGCAGGGGGGACCGAGTCGATCCCCGCTTACGCATTATGCCTCTCCGATCAGCTAAGCGCCC
GCACACCCGTTTCGTGAGTTGGCTTAG
Found at i:17263128 original size:26 final size:26
Alignment explanation
Indices: 17263098--17263150 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263088 GTTGGCTCAG
* *
17263098 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17263124 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17263150 G
1 G
17263151 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17263500 original size:26 final size:26
Alignment explanation
Indices: 17263464--17263516 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263454 GTTGACCTAG
17263464 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
17263490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17263516 G
1 G
17263517 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17264017 original size:26 final size:26
Alignment explanation
Indices: 17263967--17264019 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17263957 GTTGGCTTAG
*
17263967 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17263993 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17264019 G
1 G
17264020 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17265245 original size:26 final size:26
Alignment explanation
Indices: 17265193--17265245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17265183 GTTGGCTTAG
*
17265193 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
17265219 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
17265245 G
1 G
17265246 ATAGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:17265355 original size:184 final size:184
Alignment explanation
Indices: 17265134--17265587 Score: 531
Period size: 183 Copynumber: 2.5 Consensus size: 184
17265124 CCCTAACTTA
* *
17265134 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCCTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCCTTTCATGGGTTGACTTAGGCATAC
*
17265199 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGAT-AGGACCAAACTGAGG
66 GGAGTTCATTCCA-GTCTAAGCATACGGAGTTCATTCCCAATATAAGATCA-GACCAAACTGAGG
* * * * * *
17265263 GTTGCGGTAGCAGCATCGGCCA-CACACAG-GGGGGATCAGGTCGAT-CCCTAGATTG
129 GTTGCGGCAGCAGCATCAG-CAGCACACAGAAGGGGACCAGGCCAATACCC-AGATTG
* * * * *
17265318 CGCATTCTGCCTCTTCGGCCGACTAAGCGCCCGCACGCT-CGTTCGTGGGTTGACTTAGGCATAT
1 CGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCCTTTCATGGGTTGACTTAGGCATAC
* * * * *
17265382 GGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACTGAGGG
66 GGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATTCCCAATATAAGATCAGACCAAACTGAGGG
* * * * * *
17265447 TTGTGGCAGCGGGATCAGCAGCACGCAGAAGGGGACCAGGCCAATACCCGGCTTG
130 TTGCGGCAGCAGCATCAGCAGCACACAGAAGGGGACCAGGCCAATACCCAGATTG
* * * * * * *
17265502 CGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGTACGCTCGTTTCATTGGTTGTCTTAGGCATAC
1 CGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCCTTTCATGGGTTGACTTAGGCATAC
17265567 GGAGTTCATTCCCAGTCTAAG
66 GGAGTTCATT-CCAGTCTAAG
17265588 ATTGGACAGA
Statistics
Matches: 224, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
182 2 0.01
183 93 0.42
184 89 0.40
185 40 0.18
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
CGCATTCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCCTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCAATATAAGATCAGACCAAACTGAGGGT
TGCGGCAGCAGCATCAGCAGCACACAGAAGGGGACCAGGCCAATACCCAGATTG
Found at i:17265406 original size:26 final size:26
Alignment explanation
Indices: 17265377--17265427 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17265367 TTGACTTAGG
* *
17265377 CATATGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
*
17265403 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
17265428 GATCAGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:17265634 original size:342 final size:342
Alignment explanation
Indices: 17265219--17265929 Score: 798
Period size: 342 Copynumber: 2.1 Consensus size: 342
17265209 CCATGTCTAA
* * * **
17265219 GCATACGGAGTTCATTCCCAGTATAAGATAGGACCAAACTGAGGGTTGCGGTAGCAGCATCGGCC
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAAACCGAGGGTTGCGGCAGCAGCATCGAAC
* * * * * *
17265284 ACACACAGGG-GGGA-TCAGGTCGATCCCTAGA-TTGCGCATTCTGCCTCTTCGGCCGACTAAGC
66 ACACACAGGGAGGGACT-AAGACGATCCCCA-ACTTACACATTCTGCCTCTCCGGCCGACTAAGC
* * * *
17265346 GCCCGCACGCTC-GTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATACGG
129 ACCCGCACGCTCAGTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAACCATA-GG
* * *
17265410 AGTTCATTCCCAATCTAAGATC-AGATCAGA-CTGAGGGTTGTGGCAGCGGGATCAG-CAGCACG
193 AGTTCATTCCCAATCTAAGATCGA-ACCAGATC-GAGGGTTGCGGCAGCAGGAT-AGACAGCACG
* * * *
17265472 CAGAAGGGGACCAGGCCAATACCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGTA
255 CA-AAGGGGACCAGGCCAATACCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCA
* * * *
17265537 C-GCTCGTTTCATTGGTTGTCTTAG
319 CACCT-ATTTCATGGGTTGGCTTAG
* *
17265561 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CAGAACCGAGGGTTGCGGCAGCAAG-AT-TA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCA-AACCGAGGGTTGCGGCAGC-AGCATCGA
* * * * *
17265623 ACAGGACACAGGGAGGGACTAAGACGGTCCCCAACTTACACATTCTGCCTCTCCGGTCGATTGAG
64 ACA-CACACAGGGAGGGACTAAGACGATCCCCAACTTACACATTCTGCCTCTCCGGCCGACTAAG
* * *
17265688 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATATG
128 CACCCGCACGCTCAGTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAACCATAGG
* * *
17265753 AGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGGTAGTAGGATAGACAGCACGCAA
193 AGTTCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAA
* * * * * * *
17265818 GGGGGACCAGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCTGATCGACTGAGCACCCGCACACC
258 AGGGGACCAGGCCAATACCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACC
*
17265883 TATTTCGTGGGTTGGCTTAG
323 TATTTCATGGGTTGGCTTAG
*
17265903 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
17265930 CCCCAGCCAA
Statistics
Matches: 309, Mismatches: 48, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
341 7 0.02
342 150 0.49
343 105 0.34
344 47 0.15
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (342 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAAACCGAGGGTTGCGGCAGCAGCATCGAAC
ACACACAGGGAGGGACTAAGACGATCCCCAACTTACACATTCTGCCTCTCCGGCCGACTAAGCAC
CCGCACGCTCAGTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAACCATAGGAGT
TCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAAAGG
GGACCAGGCCAATACCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACACCTAT
TTCATGGGTTGGCTTAG
Found at i:17265892 original size:527 final size:527
Alignment explanation
Indices: 17264915--17265917 Score: 1415
Period size: 527 Copynumber: 1.9 Consensus size: 527
17264905 CAGCCGGACC
* * * * *
17264915 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCTAATACCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCGGGACAGACAGCACGCAGAAGGGGACCAGGCCAATACCCGGCTTGCGCAT
*
17264980 TATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGT
66 TATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGT
* * * * * **
17265045 TCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTACGATAGCAGGATTAACAGGACGTAGGGA
131 TCATTCCCAGTCTAAGATTAGACAGAACCGAGGGTTACGACAGCAAGATTAACAGGACACAGGGA
* * * * *
17265110 GGGACTGAGACGGTCCCTAACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCC
196 GGGACTAAGACGGTCCCCAACTTACACATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCTCA
* * * *
17265175 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
261 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
17265240 TATAAGATAGGACCAAACTGAGGGTTGCGGTAGCAGCATCGGCCACACACAGGGGGGATCAGGTC
326 TATAAGATAGAACCAAACTGAGGGTTGCGGTAGCAGCATCAGACACACACAAGGGGGACCAGGCC
* * * * *
17265305 GATCCCTAGATTGCGCATTCTGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCGTTCGTGGGTTG
391 GATCCCCAGATTGCGCATTCTGCCTCTTCGACCGACTAAGCACCCGCACCCTAGTTCGTGGGTTG
*
17265370 ACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGA
456 ACTTAGGCATAGGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGA
17265435 TCAGACT
521 TCAGACT
17265442 GAGGGTTGTGGCAGCGGGATCAG-CAGCACGCAGAAGGGGACCAGGCCAATACCCGGCTTGCGCA
1 GAGGGTTGTGGCAGCGGGA-CAGACAGCACGCAGAAGGGGACCAGGCCAATACCCGGCTTGCGCA
* *
17265506 TTATGCCTCTCCGGTCGGCTCAGCGCCCGTACGCTCGTTTCATTGGTTGTCTTAGGCATACGGAG
65 TTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAG
* * *
17265571 TTCATTCCCAGTCTAAGATTGGACAGAACCGAGGGTTGCGGCAGCAAGATTAACAGGACACAGGG
130 TTCATTCCCAGTCTAAGATTAGACAGAACCGAGGGTTACGACAGCAAGATTAACAGGACACAGGG
*
17265636 AGGGACTAAGACGGTCCCCAACTTACACATTCTGCCTCTCCGGTCGATTGAGCACCCGCACGCTC
195 AGGGACTAAGACGGTCCCCAACTTACACATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCTC
* *
17265701 ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTAAGCATA-TGAGTTCATTCCC
260 ATTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCTAAGCATACGGAGTTCATTCCC
* * * * * *
17265764 AGTCTAAGATCGAACCAGA-TCGAGGGTTGCGGTAGTAGGAT-AGACAGCACGCAAGGGGGACCA
324 AGTATAAGATAGAACCAAACT-GAGGGTTGCGGTAGCAGCATCAGACA-CACACAAGGGGGACCA
* * * * * *
17265827 GGCCGATCCCCGGCTTGCTCATTCTGCCTC-TCTGATCGACTGAGCACCCGCACACCTATTTCGT
387 GGCCGATCCCCAGATTGCGCATTCTGCCTCTTC-GACCGACTAAGCACCCGCAC-CCTAGTTCGT
*
17265891 GGGTTGGCTTAGGCATAGGGAGTTCAT
450 GGGTTGACTTAGGCATAGGGAGTTCAT
17265918 TCCATGTCTA
Statistics
Matches: 415, Mismatches: 55, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
525 6 0.01
526 99 0.24
527 305 0.73
528 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (527 bp):
GAGGGTTGTGGCAGCGGGACAGACAGCACGCAGAAGGGGACCAGGCCAATACCCGGCTTGCGCAT
TATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATTAGACAGAACCGAGGGTTACGACAGCAAGATTAACAGGACACAGGGA
GGGACTAAGACGGTCCCCAACTTACACATTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCTCA
TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAG
TATAAGATAGAACCAAACTGAGGGTTGCGGTAGCAGCATCAGACACACACAAGGGGGACCAGGCC
GATCCCCAGATTGCGCATTCTGCCTCTTCGACCGACTAAGCACCCGCACCCTAGTTCGTGGGTTG
ACTTAGGCATAGGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCAGA
TCAGACT
Found at i:17266250 original size:26 final size:26
Alignment explanation
Indices: 17266220--17266272 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17266210 GTTGGCCTAC
*
17266220 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
17266246 GCATACATAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
17266272 G
1 G
17266273 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:17268638 original size:26 final size:26
Alignment explanation
Indices: 17268602--17268654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17268592 CCGTTCCAAT
17268602 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
* *
17268628 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
17268654 C
1 C
17268655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:17268705 original size:183 final size:183
Alignment explanation
Indices: 17268378--17268728 Score: 447
Period size: 183 Copynumber: 1.9 Consensus size: 183
17268368 CTATCGATCC
* * * * ** *
17268378 TGCTGTTGGTCCTGCTGTCGCAACCCTCGGTCTGGTCTGATCTGAGACTGGGAATGAACTCTGCA
1 TGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGGTCCAATCTGAGACTGGGAATGAACACTGCA
* *
17268443 TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCGACCCACGAAACGAGCATGCGGCCACTCA
66 TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATACGGCCACTCA
* *
17268508 GTCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCTACG
131 GTCGATCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCTACG
* * *
17268561 TGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGTTCCAATCTTAGACTGGGAATGAACACTGTA
1 TGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGGTCCAATCTGAGACTGGGAATGAACACTGCA
* ** * * * *
17268626 TGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTC
66 TGCTTAGACAT-GGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATACGGCCACTC
* *
17268690 A-TCCGA-CAAGAGAGGCAGGATACGCAAGTCAGGGATCGA
130 AGT-CGATC-AGAGAGGCAGAATACGCAAGCCAGGGATCGA
17268729 ACGGGTGGTA
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
182 3 0.02
183 139 0.98
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (183 bp):
TGCTGTCGATCCTACTGTCGCAACCCTCGGTCCGGTCCAATCTGAGACTGGGAATGAACACTGCA
TGCTTAGACATGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATACGGCCACTCA
GTCGATCAGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCTACG
Found at i:17269364 original size:26 final size:26
Alignment explanation
Indices: 17269347--17269424 Score: 156
Period size: 26 Copynumber: 3.0 Consensus size: 26
17269337 AATGCAATTT
17269347 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
17269373 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
17269399 GTATGCTTAGACATGGAATGAACTCC
1 GTATGCTTAGACATGGAATGAACTCC
17269425 ATCTGCCTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
GTATGCTTAGACATGGAATGAACTCC
Found at i:17269782 original size:26 final size:26
Alignment explanation
Indices: 17269746--17269798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17269736 CTGGTCTGAT
17269746 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17269772 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17269798 C
1 C
17269799 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17269849 original size:184 final size:184
Alignment explanation
Indices: 17269378--17269864 Score: 627
Period size: 184 Copynumber: 2.6 Consensus size: 184
17269368 ACTCCGTATG
* * * * *
17269378 CTTAGACAT-GGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATCTGCCTAAGCCAAC
1 CTTAGAC-TGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
17269441 CCACGAAATGTGCGTGCGGCCACTTAGTCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGC
64 CCATGAAATGAGCGTGCGGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGC
** ** ** *
17269506 CCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCTGGTCCGAT
129 CCGGTCCCCCCTGCATGCTACCGATCCTGCTACCACAACCCTCAATCTGGTCCGAT
*
17269562 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* ** * * * *
17269627 ATGAAATGAGCGTACGGGCACTCAACCAACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGTCC
66 ATGAAATGAGCGTGCGGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC
* * * *
17269692 GGTCCCCCCTGCATGCTACCGATCCTGTTACCGCAACCGTCAATCTGGTCTGAT
131 GGTCCCCCCTGCATGCTACCGATCCTGCTACCACAACCCTCAATCTGGTCCGAT
17269746 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
17269811 ATGAAACGAGCGTGCGGGCGCTCGGTCGACCAAAGAGGCAGGATGCGCAAGCCG
66 ATGAAATGAGCGTGCGGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCG
17269865 GGCATCGAAC
Statistics
Matches: 259, Mismatches: 42, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
183 2 0.01
184 257 0.99
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ATGAAATGAGCGTGCGGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC
GGTCCCCCCTGCATGCTACCGATCCTGCTACCACAACCCTCAATCTGGTCCGAT
Found at i:17270497 original size:26 final size:26
Alignment explanation
Indices: 17270468--17270520 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17270458 CACTCAAAAT
17270468 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17270494 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17270520 C
1 C
17270521 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17271661 original size:158 final size:158
Alignment explanation
Indices: 17271360--17271661 Score: 417
Period size: 158 Copynumber: 1.9 Consensus size: 158
17271350 AACTCCATAT
* * * *
17271360 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGAAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
17271425 CAAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCATGCTGTCGATCC
66 CAAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCC
**
17271490 TACTGCCGTAACCCCTGTTCTGACTGGG
131 TACTGCCACAACCCCTGTTCTGACTGGG
* * * * *
17271518 GCTTAGACATGAAATGAACTACCTATGCCTAAGCCAACCGACGAAACGGGTGTGCGGGTGCTCAT
1 GCTTAGACATGAAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA-
* *
17271583 AC-AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGCCGATC
65 ACAAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATC
* * *
17271647 TTGCTGTCACAACCC
130 CTACTGCCACAACCC
17271662 TCGATCTGGT
Statistics
Matches: 124, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 122 0.98
159 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGAAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CAAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCC
TACTGCCACAACCCCTGTTCTGACTGGG
Found at i:17271681 original size:158 final size:157
Alignment explanation
Indices: 17271360--17271706 Score: 403
Period size: 158 Copynumber: 2.2 Consensus size: 157
17271350 AACTCCATAT
* *
17271360 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
17271425 CAAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCATGCTGTCGATCC
65 CAAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCC
** * * *
17271490 TACTGCCGTAACCCCTGTTCTGACTGGG
130 TACTGCCACAACCCCTGATCTGACTCGA
* * * * * *
17271518 GCTTAGACATGAAATGAACTACCTATGCCTAAGCCAACCGACGAAACGGGTGTGCGGGTGCTCAT
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA-
* *
17271583 AC-AGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGCCGATC
64 ACAAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATC
* * * **
17271647 TTGCTGTCACAA-CCCTCGATCTGGTTCGA
129 CTACTGCCACAACCCCT-GATCTGACTCGA
*
17271676 TCTTAGAC-TGGGAATGAACTCCATATGCCTA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTA
17271707 GACTGGGGAT
Statistics
Matches: 159, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 8 0.05
158 149 0.94
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
AAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCCT
ACTGCCACAACCCCTGATCTGACTCGA
Found at i:17271718 original size:26 final size:26
Alignment explanation
Indices: 17271679--17271732 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17271669 GGTTCGATCT
17271679 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
17271705 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
17271731 TA
1 TA
17271733 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:17271780 original size:342 final size:338
Alignment explanation
Indices: 17270651--17271802 Score: 1022
Period size: 342 Copynumber: 3.3 Consensus size: 338
17270641 ACGGTTCAAT
* * * * *
17270651 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACTGAGCGTGCGGCCATTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTACGGGCACTCAG
*** * * * * * *
17270716 CCGGCCGAAGAGGCATAATGCGTAGGCTGGGGATC-GCCCGATCCCCCTCTGCATGCTGTCGGTC
65 CTAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGATC
** * * * * *
17270780 CCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAGTGAACTCCCTATGGCTAAGCCA
129 CCGCTGCCGTAACCC-CTGTTCTGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCA
* * * ** * * * * * * *
17270845 ACCCATGAAATGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGAACA
192 ACCCACGAAACGGGTGTGCGGGTGCTCA-ACAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * * * *
17270910 GCCCGGCCCCCTTACGTGCTGTCAATCCTGCTGTCGCAACCCTCGATCTGATCTAATCTTAGACT
256 GCCCGGTCCCCTTGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACT
17270975 GGGAATGAACTCCATATG
321 GGGAATGAACTCCATATG
* * * *
17270993 CTTCA-ACTGGGGATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTACGGGCACTTAG
1 CTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
*** * * * * * * *
17271057 -TCGGTCGGAGAGGCATAATACGCAAGCCGGGGATCAGCCCGGTCCCCTTCTACGTGCTGTCGAT
65 CT-AACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCATGCTGTCGAT
* * *
17271121 CCCGCTGCCGGTCCTACTGCCACAACACTCGGTCTGGCTGGGGCTTAGAGATGGAATGAACTCCG
128 CCCGCTGCC-G---TA-----AC--CCCT-GTTCT-GCTGGGGCTTAGACATGGAATGAACTCC-
* * * * * * *
17271186 TATGCCTAAGCCAACCCACGAAACGAGTGTGAGGGTGCTCAGCCGACCGAAGAGGTAAAATGCGC
179 TATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAACAG-CCGGAGAGGCAGAATGCGC
* * * * *
17271251 AAGTCGGGCATCGACCCGGTCTACCCTTGCGTGCTGTCGAGCCTGTTGCTGGTCCTTCTGTCGCA
243 AAGCCGGGGATCGGCCCGGTC--CCCTTGCGTGC--T---GCC-GAT-C---T--TGCTGTCGCA
* *
17271316 ACCCTCGGTCCT-ATCTGATCTTAGATTGGGAATGAACTCCATATG
294 ACCCTCGAT-CTGATCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
17271361 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* *
17271425 C-AAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTGCATGCTGTCGATC
65 CTAA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC
** *
17271489 CTACTGCCGTAACCCCTGTTCTGACTGGGGCTTAGACATGAAATGAACTACCTATGCCTAAGCCA
129 CCGCTGCCGTAACCCCTGTTCTG-CTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCA
*
17271554 ACCGACGAAACGGGTGTGCGGGTGCTCATACAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
192 ACCCACGAAACGGGTGTGCGGGTGCTCA-ACAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * *
17271619 GCCCGATCCCCTCTGCGTGCTGCCGATCTTGCTGTCACAACCCTCGATCTGGT-TCGATCTTAGA
256 GCCCGGTCCCCT-TGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGATCTGATCT-GATCTTAGA
17271683 CTGGGAATGAACTCCATATG
319 CTGGGAATGAACTCCATATG
* * * *
17271703 CCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * **
17271768 TAACCAGAGAGGCAGGATGCATAAGCCGGGGATCG
66 TAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
17271803 AATGGGTGGT
Statistics
Matches: 647, Mismatches: 117, Indels: 92
0.76 0.14 0.11
Matches are distributed among these distances:
341 45 0.07
342 199 0.31
343 3 0.00
344 1 0.00
346 1 0.00
347 1 0.00
348 2 0.00
349 3 0.00
351 2 0.00
352 2 0.00
353 11 0.02
354 93 0.14
355 98 0.15
356 17 0.03
358 3 0.00
361 2 0.00
362 1 0.00
363 3 0.00
366 1 0.00
367 21 0.03
368 135 0.21
369 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (338 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
TAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCC
GCTGCCGTAACCCCTGTTCTGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCC
ACGAAACGGGTGTGCGGGTGCTCAACAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCTTGCGTGCTGCCGATCTTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAA
TGAACTCCATATG
Found at i:17272838 original size:159 final size:157
Alignment explanation
Indices: 17272427--17272840 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 157
17272417 TCCGTATGCA
* * * * *
17272427 TAGACATGGAATGAACTCCATATGCCTAAGCCAA-CCTACGAAACGAGCATACGGGGGCACAGCC
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCT-CGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
17272491 GGCTGGAGAGGCAGAATGCATAAGCCGAGGATC-AGCCCAGTCCCCCTGCGTCTTGTCGATCCTG
65 GGCCGGAGAGGCAGAATGCGTAAG-CGAGGATCGAGCCCAGTCCCCCTACGTCTTGTCGATCCCG
* *
17272555 CTACTACAACCCTCACTCCGGTCAGATCT
129 CTACCACAACCCTCACTCCGGTCAGAGCT
** * * * *
17272584 TAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCAT-GAAATGAGTGTGCGGGTGCTCAGC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCC-TCGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
17272647 AGGCCGAAGAGGCAGAATACGCAAGCTGAGGATCGA-CCCGGTCCCCCTCTACGTGC-TGTCGGT
64 CGGCCGGAGAGGCAGAATGCGTAAGC-GAGGATCGAGCCCAGT-CCCC-CTACGT-CTTGTCGAT
* * ** *
17272710 CCCGCTACCACAACCCTCAGTTCGGTTGGGGCT
125 CCCGCTACCACAACCCTCACTCCGGTCAGAGCT
* * * * *
17272743 TAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCTCAAAATGGGCGTGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCTCGAAATGAGCGTGCGGGCGCTCAGCCG
* *
17272808 ACCGGAGAGGCAGAATGCGTAAGTCAAGGATCG
66 GCCGGAGAGGCAGAATGCGTAAG-CGAGGATCG
17272841 GCTCGATCCC
Statistics
Matches: 203, Mismatches: 43, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 77 0.38
158 8 0.04
159 113 0.56
160 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCTCGAAATGAGCGTGCGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGTAAGCGAGGATCGAGCCCAGTCCCCCTACGTCTTGTCGATCCCGCT
ACCACAACCCTCACTCCGGTCAGAGCT
Found at i:17273317 original size:26 final size:26
Alignment explanation
Indices: 17273279--17273331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17273269 CCGGTCTGAT
17273279 CTTAGACTAGGAATGAACCCCATATG
1 CTTAGACTAGGAATGAACCCCATATG
* *
17273305 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACCCCATATG
17273331 C
1 C
17273332 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCATATG
Found at i:17273720 original size:159 final size:158
Alignment explanation
Indices: 17273304--17273721 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 158
17273294 AACCCCATAT
*
17273304 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGG-GTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATG-GGCGTGCGGGCGCTCA
* * * * * *
17273368 GCCGATCGGAGAGGTAAAATGCGCTAGTTGGGGATCAAACCGATCCCCCTTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATCGAACCGATCCCCCTTACATGCTGCCGATC
* *
17273433 CTGCTGTCACAACCCTCGGTCTGGCCTGA
130 CCGCTGCCACAACCCTCGGTCTGGCCTGA
* * * * * * * * * *
17273462 TCTTAGAC-TGGGAATAAACTTCGTATGCATAAGTCAACGCATGAAATGAGCGTGCAGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* * * * * * * * * *
17273526 GCCGGCCGAAAAGGCATAATACGCAAGAC-GGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGG
65 GCCGGTCGGAGAGGTAAAATGCGCAAG-CTGGGGATCGAACCGATCCCCCT-TACATGCTGCCGA
* *
17273590 TCCCGCTGCCACAACCCTTGGTCTGG-CTAGG
128 TCCCGCTGCCACAACCCTCGGTCTGGCCT-GA
* ** *
17273621 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* *
17273686 CCGGTCGGAGAGGTAGAATGCGCAAGCTAGGGATCG
66 CCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATCG
17273722 GCTTGATCCC
Statistics
Matches: 202, Mismatches: 51, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 90 0.45
159 109 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATCGAACCGATCCCCCTTACATGCTGCCGATCC
CGCTGCCACAACCCTCGGTCTGGCCTGA
Found at i:17273732 original size:159 final size:157
Alignment explanation
Indices: 17273304--17273769 Score: 427
Period size: 158 Copynumber: 2.9 Consensus size: 157
17273294 AACCCCATAT
*
17273304 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGG-GTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATG-GGCGTGCGGGCGCTCA
* * * * * *
17273368 GCCGATCGGAGAGGTAAAATGCGCTAGTTGGGGATCAAACCGATCCCCCTTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATC-GACCGATCCCCCTTACATGCTGCCGATC
* *
17273433 CTGCTGTCACAACCCTCGGTCTGGCCTGA
129 CCGCTGCCACAACCCTCGGTCTGGCCTGA
* * * * * * * * * *
17273462 TCTTAGAC-TGGGAATAAACTTCGTATGCATAAGTCAACGCATGAAATGAGCGTGCAGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
* * * * * * * * *
17273526 GCCGGCCGAAAAGGCATAATACGCAAGAC-GGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGG
65 GCCGGTCGGAGAGGTAAAATGCGCAAG-CTGGGGATCGA-CCGATCCCCCT-TACATGCTGCCGA
* *
17273590 TCCCGCTGCCACAACCCTTGGTCTGG-CTAGG
127 TCCCGCTGCCACAACCCTCGGTCTGGCCT-GA
* ** *
17273621 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * * * * * *
17273686 CCGGTCGGAGAGGTAGAATGCGCAAGCTAGGGATCGGCTTGATCCCCCCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATCGAC-CGATCCCCCTTACATGCTGCCGATCC
* * **
17273751 TGCTGTCGTAACCCTCGGT
130 CGCTGCCACAACCCTCGGT
17273770 TCGAACCAAT
Statistics
Matches: 236, Mismatches: 63, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 116 0.49
159 116 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAAAATGCGCAAGCTGGGGATCGACCGATCCCCCTTACATGCTGCCGATCCC
GCTGCCACAACCCTCGGTCTGGCCTGA
Found at i:17274198 original size:26 final size:26
Alignment explanation
Indices: 17274160--17274212 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17274150 TCGGTTTGAT
* *
17274160 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17274186 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17274212 C
1 C
17274213 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17274260 original size:881 final size:877
Alignment explanation
Indices: 17272397--17276977 Score: 4906
Period size: 881 Copynumber: 5.2 Consensus size: 877
17272387 GTGGCTCAAA
*
17272397 ATCTTAGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * * *
17272462 CTACGAAACGAGCATACGGGGGCACAGCCGG-CTGGAGAGGCAGAATGCATAAGCCGAGGATCAG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* ** * *
17272526 CCC-AGT-CCCCCTGCGT-CTTGTCGATCCTGCTACTACAACCCTCACTCCGGTCAGATCTTAGA
130 CCCGA-TCCCCCCTACGTGC-TGTCGATCCTGCTAC-ACAACCCTCGGTCTGGTCTGATCTTAGA
* * * * *
17272588 CTGGGAATGAAC-TCTGTATGCATAAGTCAACCCATGAAATGAGTGTGC-GGGTGCTCAGCAGGC
192 CTGGGAATGAACTTC-GTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCT-CTGAGCCGGC
* * * * *
17272651 CGAAGAGGCAGAATACGCAAG-CTGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGTCCCGC
255 CGAAGAGGCATAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGC
* * * * *
17272715 TACCACAACCCTCAGTTCGGTTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCC
319 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * *
17272780 TCAAAATGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGTCAAGGATCGGCTC
384 ACGAAATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTC
* * * * *
17272845 GATCCCTCTTGCGTGCTGTCGATCCTACTGCCGTAGCCCTCGATTTGGACTGATCTTAGACTGGG
449 GATCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGACCGATCTTAGACTGGG
* * * * *
17272910 AATGAACTCCGTATGCTTATATTTGGGATGAACTTTGTATGCCTAAGTTAACTCATGAAACGAGC
514 AATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * ** * * * *
17272975 GTGCGGACGCTCAATCGACCGAAGAGGCCGGTC-AGAGAGGCATAATACGTAAGCCGAGGATCAG
579 ATGCGGGCGCTC-AGCGGTCG-AGAGGCCGGCCGA-AGAGGCATAATGCGCAAGCCGGGGATCAG
* * * * * * * * * *
17273039 CCTGATCCCCCTCTGTGTGCTGTCGAACCCGTTATCGGTCTTGCTGCCACAACCCTTGGTCTGGC
641 CCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCT-CTGCCACAACCCTCGGTCCGAC
* * * *
17273104 TGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC-AAAAGCAACGTGCAGGCA
705 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCA
* **** * * * * **
17273168 CTCAGCCAATTGAAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCCTGCGTGCTACC
769 CTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTC
* * * * *
17273233 TATCCTACTACT-GGT-CTGACTACTGCAACCCTCGGTCCGGTCTG
834 AATCCTGCT-GTGGGTCCT-ACTACCGCAACCCTCGGTTCGGTCTG
* * * *
17273277 ATCTTAGACTAGGAATGAACCCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * * ** **
17273342 CCATGAAATGAGGGTGCGGGCGCTTAGCCGATCGGAGAGGTAAAATGCGCT-AGTTGGGGATCAA
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCG-TAAGCCGGGGATCGG
* * * *
17273406 ACCGATCCCCCTTACGTGCTGTCGATCCTGCTGTCACAACCCTCGGTCTGGCCTGATCTTAGACT
130 CCCGATCCCCCCTACGTGCTGTCGATCCTGCT-ACACAACCCTCGGTCTGGTCTGATCTTAGACT
* * *
17273471 GGGAATAAACTTCGTATGCATAAGTCAACGCATGAAATGAGCGTGCAGGCTCTGAGCCGGCCGAA
194 GGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCTCTGAGCCGGCCGAA
* * * * * *
17273536 AAGGCATAATACGCAAGACGGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCA
259 GAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
* * * *
17273601 CAACCCTTGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
324 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * *
17273666 ATGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCTAGGGATCGGCTTGATCC
389 ATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGATCC
* * * * * * *
17273731 CCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTTCGAACCAATCTTACACTGGGAATGA
454 CCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGACCGATCTTAGACTGGGAATGA
* *
17273796 ACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCTTTCG
519 ACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCG
* * * *
17273861 GGTGCTCAGTCGGTCGGAGAGGCCGGCCGAAGAGGCATAATGCGTAAACCGGGGATCAGCTCGGT
584 GGCGCTCAG-CGGTC-GAGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGT
* * * * *
17273926 CCCCTTCTACGTGCTGTCGATGCCGCTACCAGTCCTACTGTCACAACCCTCGGTCCGACTGGGGC
647 CCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCT-CTGCCACAACCCTCGGTCCGACTGGGGC
*
17273991 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCACTCAACC
711 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* * * *
17274056 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCTG
776 GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCTG
*
17274121 CTGTGGGTCCTACTACCGCAACCCTCGGTTCGGTTTG
841 CTGTGGGTCCTACTACCGCAACCCTCGGTTCGGTCTG
*
17274158 ATCTTAGACTGGGAATTAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * *
17274223 CCATGAAACGAGCATGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAAG-CGGAGGATTGG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGG-GGATCGG
* * * * * * *
17274287 CCCGGTCCCCCTTGCGTG-TAGTCGATCCTGCTGTCGCAACCCTCGGT-TCGATCTGATCTTAGT
130 CCCGATCCCCCCTACGTGCT-GTCGATCCTGCT-ACACAACCCTCGGTCT-GGTCTGATCTTAGA
* * *
17274350 TTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGAGCGCTC--CGTCGGC
192 CTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGC-AG-GCTCTGAGCCGGC
* * * *
17274413 CGAAGAGGCATAATGCGCAAGTTGGGGATCGGCCCGATCCACCTCT--GTGCTGTAGGTCCCGCT
255 CGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCT
* * *
17274476 GCCACAACCCTCGATCCGGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCA
320 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
17274541 CGAAACGGGCGTGTGGGCGCTCAGCCAATCGGAGAGGCAGAATGCGCAAGCCAAGGG-CCGGC-C
385 CGAAATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCC-AGGGATCGGCTC
* * * * *
17274604 TAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGA-TCCGATCCGATCTTAGACTG
449 GA-TCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGA-CCGATCTTAGACTG
* * * *
17274668 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTATGACTAAGTCAACACATGAAACGA
512 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA
* * *
17274733 GCGTGCGGGCGCTCA---GTC--GA--CC-G--G-AGAGGCATAATTCGCAAGCTGGGGAAT-AG
577 GCATGCGGGCGCTCAGCGGTCGAGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGG-ATCAG
* * * * * * ** *
17274786 CCCGATCCCCCTCTGCATGCTGCCGATCCTGCTACCGGTTCTGCTACCACAACCCTCTATCCGAT
641 CCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCT-CTGCCACAACCCTCGGTCCGAC
* * **
17274851 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAACGAGCGTGCGGGTGC
705 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
** * * * * *
17274916 TCAACTAGCCGGAGAGGTAGAATACGCAAGCCAGGGATCGGCCC-AGTCCCCCTTTACGTGCTAT
770 TCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCC-CTGCGTGCTGT
* * * * *
17274980 CGATCCTGCTGCTGGGGTCTTGCTACCGCAACCCTCGG-TCTGATTTG
833 CAATCCTGCTG-T-GGGTCCTACTACCGCAACCCTCGGTTC-GGTCTG
* *
17275027 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGGACTCGATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * ** *
17275092 CCACGAAACAAGCGTGCGGACGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATTGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
* * * ** ** *
17275157 CTGGTCCCCCCTACGTGCTGTCGATCTTGCTACTGTAACCCTCGGTCCAGTCCGATCTTAGACTG
131 CCGATCCCCCCTACGTGCTGTCGATCCTGCTAC-ACAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * * * ** * *
17275222 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGGACTGAGCCAGCCGGAG
195 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCTCTGAGCCGGCCGAAG
* * * * *
17275287 GGGCATAATGCGTAAGCCGGGG-TCGGCCTGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCAC
260 AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
17275351 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
325 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * *
17275416 CGGGCGTGTGGGCACTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCTCGGTCCC
390 TGGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGATCCC
** ** * * *
17275481 CCCTGCACGCTACCGATCCTACTGTCGCAACCCTCGATTCGGACTGATCTTAGACTGGGAATGAA
455 CCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGACCGATCTTAGACTGGGAATGAA
* * * * *
17275546 CTCTGTATGCTTAGATTGGGGATGAAATTCGTATGCCTGAGTCAACCCGTGAAACGAGCATGGGG
520 CTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGG
* * * * * * * * *
17275611 GTGCTCAGCCGGCCGAAAAGGTCGGTCGGAGAGGCATAATGCACAAGCCGGTGAGT-AGCCCAGT
585 GCGCTCAG-CGGTCG-AGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGA-TCAGCCCGGT
*
17275675 CCCCCTCTGCGTGCTGTCGATCCCGCTACCGAT-C-CTGCCACAACCCTCGGTCCGACTGGGGCT
647 CCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCTCTGCCACAACCCTCGGTCCGACTGGGGCT
* *
17275738 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCAACCG
712 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCG
* * * * * *
17275803 GCCGAAGAGGCAGAATGTGCAAGCTGGGGATCAGCCCGACCTCCCCCTGCGTGCTGTCGATCCTA
777 GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATC-CCCCCTGCGTGCTGTC-A----A
* * ** * * *
17275868 CTGCTGGTCCTGCTGCCGGTCCTGCTGTCGCAACCCTCGGTCCAGTCCG
836 -TCCT-G--CTG-TG--GGTCCTACTACCGCAACCCTCGGTTCGGTCTG
* * *
17275917 ATCTTTGACTGGGAATTAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * *
17275982 CCACAAAACGAGCGTGCGGGCGCTCAGCCGG-CTGGAGAGGCAGAATACGCAAGCCAGGGATCGG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGG
*
17276046 CCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGTCT
130 CCCGATCCCCCCTACGTGCTGTCGATCCTGCTA-CACAACCCTCGGTCTGGTCTGATCTTAGACT
* * * * * * *
17276111 GGGAATGAACTCCGTATGAACAAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGCCGACCGAA
194 GGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCTCTGAGCCGGCCGAA
* * * * * * *
17276176 AAGGCATAATGCACAAGTCGGGGAT-GGTCCGATCCCTCTCTGCGTGTTG-CAGGTTCCGCTGCC
259 GAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-GGTCCCGCTGCC
* * *
17276239 ACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGA
323 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * *
17276304 AATGGGTGTGCCGGCGCTCAATCGACCGGAGAGGTAGAATGCGTAAGCCAGGGA-CTGGCCCGGT
388 AATGGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATC-GGCTCGAT
* * * * * *
17276368 CCCCCATGCGTGTTGTCGATCCTACTGCCTGTAACCCTCGATCCGGTCCGATCCTAGGCTGGGAA
452 CCCCCCTGCGTGCTGTCGATCCTACTGCC-GTAACCCTCGATTCGGACCGATCTTAGACTGGGAA
* * * *
17276433 TGAACTCCTTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCAT
516 TGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCAT
* *
17276498 GC-GG-G--C-GC--TC-A-A--CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGG
581 GCGGGCGCTCAGCGGTCGAGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGG
* * * * * * * **
17276552 TCCACTTCTGCATGCTATCGATCCCGCTGCCGGTCCTGTAGCCATAACCCTCGGTCCGGTTGGGG
646 TCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTCCTCT-GCCACAACCCTCGGTCCGACTGGGG
* * * *
17276617 CTTAGACATGGCATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCTCTCAGC
710 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * * * *
17276682 CGGCCGGAGAGGTAGAATGCGCGAGCCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCT
775 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
*
17276747 GC--T--G--------CCGCAACCCTCGG-TCTGATCTG
840 GCTGTGGGTCCTACTACCGCAACCCTCGGTTC-GGTCTG
* *
17276773 ATCTTAGACTGGGAATGAATTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * *
17276838 CCTCGAAGCGGGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
* * * * *
17276903 CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTG
131 CCGATCCCCCCTACGTGCTGTCGATCCTGCTA-CACAACCCTCGGTCTGGTCTGATCTTAGACTG
17276968 GGAATGAACT
195 GGAATGAACT
17276978 CTGTTTGCTT
Statistics
Matches: 3123, Mismatches: 497, Indels: 186
0.82 0.13 0.05
Matches are distributed among these distances:
855 1 0.00
856 198 0.06
857 1 0.00
864 1 0.00
865 1 0.00
866 174 0.06
867 24 0.01
868 21 0.01
869 264 0.08
870 250 0.08
871 6 0.00
872 2 0.00
873 1 0.00
874 5 0.00
875 4 0.00
877 2 0.00
878 66 0.02
879 244 0.08
880 259 0.08
881 980 0.31
882 21 0.01
883 61 0.02
885 2 0.00
886 4 0.00
887 2 0.00
888 1 0.00
889 9 0.00
890 429 0.14
891 90 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (877 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
CCGATCCCCCCTACGTGCTGTCGATCCTGCTACACAACCCTCGGTCTGGTCTGATCTTAGACTGG
GAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCTCTGAGCCGGCCGAAGA
GGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
GGGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGATCCCC
CCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGACCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGG
CGCTCAGCGGTCGAGAGGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCC
CTCTGCGTGCTGTCGATCCCGCTACCGGTCCTCTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCG
GAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGTG
GGTCCTACTACCGCAACCCTCGGTTCGGTCTG
Found at i:17275555 original size:158 final size:156
Alignment explanation
Indices: 17275055--17275555 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 156
17275045 ACTCCGTATG
* * * * *
17275055 CTTAGACATGGAATGGACT-CGATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAG
1 CTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
* * * *
17275119 CCGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATTGGCCTGGTCCCCCCTACGTGCTGTCGATCT
65 CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC-
* *
17275184 TGCTACTGT--AACCCTCGGTCCAGTCCGAT
129 --CTACTGTCCAACCCTCGGTCC-GGCTGAT
* * * * *
17275213 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAT-TCGGGGACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTCA
* * * * * *
17275276 GCC-AGCCGGAGGGGCATAATGCGTAAGCC-GGGGTCGGCCTGGTCCCCCTCTGTGTGCTGTCGG
64 GCCGA-TCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGA
** * **
17275339 TCCCGCTGCCACAACCCTCGGTCCGGCTGGGG
127 TCCTACTGTC-CAACCCTCGGTCCGGCT-GAT
* *
17275371 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGC
* * * ** **
17275436 CGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCAG-CTCGGTCCCCCCTGCACGCTACCGATCC
66 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCT-GGTCCCCCCTGCGTGCTGTCGATCC
* *
17275500 TACTGTCGCAACCCTCGATTCGGACTGAT
130 TACTGTC-CAACCCTCGGTCCGG-CTGAT
*
17275529 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17275556 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
155 4 0.01
157 20 0.07
158 225 0.83
159 21 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCCAACCCTCGGTCCGGCTGAT
Found at i:17276241 original size:158 final size:158
Alignment explanation
Indices: 17275954--17276445 Score: 359
Period size: 158 Copynumber: 3.1 Consensus size: 158
17275944 GCTTAGACAT
* * * * * *
17275954 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAG
1 GGAATGAACTCCGTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCCCTCAGCCGACCGAAA
*
17276019 AGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACA
66 AGGCAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACA
17276084 ACCCTCGGTCTGGTCTGATCTTAGTCTG
131 ACCCTCGGTCTGGTCTGATCTTAGTCTG
* * *
17276112 GGAATGAACTCCGTATGAAC-AAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGCCGACCGAA
1 GGAATGAACTCCGTATG-ACTAAGCCAACCCACAAAACGAGCGTGCGGGCCCTCAGCCGACCGAA
* * * * * * * * * *
17276176 AAGGCATAATGCACAAGTCGGGGAT-GGTCCGATCCCTCTCTGCGTGTTG-CAGGTTCC-GCTGC
65 AAGGCAGAATACACAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTGTC--GATCCTGCTAC
* * ** *
17276238 CACAACCCTCGATCCGG-CTAGGGCTTAGACAT-
127 CACAACCCTCGGTCTGGTCT-GATCTTAGTC-TG
* * * * * * * * * ** * *
17276270 GGAATGAACTCCCTACGCCTAAGCCAACCCACGAAATGGGTGTGCCGGCGCTCAATCGACCGGAG
1 GGAATGAACTCCGTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCCCTCAGCCGACCGAAA
* * ** * * * * * * *
17276335 AGGTAGAATGCGTAAGCCAGGGA-CTGGCCCGGTCCCCCATGCGTGTTGTCGATCCTACTGCCTG
66 AGGCAGAATACACAAGCCAGGGATC-GGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACC-A
* * * * * *
17276399 TAACCCTCGATCCGGTCCGATCCTAGGCTG
129 CAACCCTCGGTCTGGTCTGATCTTAGTCTG
*
17276429 GGAATGAACTCCTTATG
1 GGAATGAACTCCGTATG
17276446 CTTAGACTGG
Statistics
Matches: 260, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 18 0.07
158 190 0.73
159 51 0.20
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCCCTCAGCCGACCGAAA
AGGCAGAATACACAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACA
ACCCTCGGTCTGGTCTGATCTTAGTCTG
Found at i:17276813 original size:26 final size:26
Alignment explanation
Indices: 17276775--17276827 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17276765 CTGATCTGAT
* *
17276775 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
17276801 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
17276827 C
1 C
17276828 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:17276930 original size:184 final size:184
Alignment explanation
Indices: 17276616--17277084 Score: 602
Period size: 184 Copynumber: 2.5 Consensus size: 184
17276606 TCCGGTTGGG
* *
17276616 GCTTAGACATGGCATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCT-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-TGCTCA
* * *
17276680 GCCGGCCGGAGAGGTAGAATGCGCGAGCCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
* * * *
17276745 CTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAATTCCGTAT
130 CTGCTACCGCAACCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17276800 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTCGAAGCGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * ** *
17276865 CTGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
* * *
17276930 TGCTACCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTTT
131 TGCTACCGCAACCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17276984 GCTTAGA-TTGGGGAA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTC
1 GCTTAGACAT--GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * *
17277047 AACCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCG
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
17277085 AACGGGTGGT
Statistics
Matches: 244, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
183 2 0.01
184 238 0.98
185 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGATCTGATCTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:17278060 original size:26 final size:26
Alignment explanation
Indices: 17278024--17278076 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17278014 CCGATCCGAT
17278024 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
17278050 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17278076 C
1 C
17278077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17278433 original size:26 final size:26
Alignment explanation
Indices: 17278404--17278456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17278394 CCAGTCCGAT
17278404 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
17278430 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
17278456 C
1 C
17278457 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:17278775 original size:159 final size:157
Alignment explanation
Indices: 17278429--17278869 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 157
17278419 AACTCCATAT
* * *
17278429 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
17278494 CCGGCCAGAGAGGCAGAATGCGTAAGCTAGGGATCGACCC-AGTCCCCCCTGCGTGCTGTCGATA
66 CCGACCAG-GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGA-TCCCCCCTGCGTGCTGCCGATA
*
17278558 CTGCTACTGCAACCCTCAGTCCGATTCGA
129 CTGCTACAGCAACCCTCAGTCCGATTCGA
* * * * * *
17278587 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
17278651 GCCAACCAAGGAGGCATAATGCGCAAGCTGGGGACCGGCCCGATCCCCCTTTGCGTGCTGCCGGT
65 GCCGACC-AGGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* ** * *
17278716 -CT-C-ACAGCCACAACCTTCAGTTTGATTGGG
128 ACTGCTACAG---CAACCCTCAGTCCGATTCGA
* * *
17278746 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * *
17278811 CCGACC-GGAAAGGCAGAATGCACAAGTTGGGGATTGGCCCGATCCCCCCTGCGTGCTGC
66 CCGACCAGG--AGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGC
17278870 TGATCCTGTC
Statistics
Matches: 232, Mismatches: 41, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 4 0.02
158 102 0.44
159 122 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCAGGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATACT
GCTACAGCAACCCTCAGTCCGATTCGA
Found at i:17285727 original size:26 final size:26
Alignment explanation
Indices: 17285698--17285750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17285688 GTTGACTTAG
* *
17285698 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17285724 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17285750 G
1 G
17285751 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17286068 original size:26 final size:26
Alignment explanation
Indices: 17286034--17286086 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17286024 GTTGGCTTAG
*
17286034 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17286060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17286086 G
1 G
17286087 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17286172 original size:11 final size:11
Alignment explanation
Indices: 17286156--17286181 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17286146 CCTAGGGTAC
17286156 CATCGTCGGAG
1 CATCGTCGGAG
17286167 CATCGTCGGAG
1 CATCGTCGGAG
17286178 CATC
1 CATC
17286182 ACTGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17287317 original size:316 final size:317
Alignment explanation
Indices: 17286728--17287585 Score: 1025
Period size: 316 Copynumber: 2.7 Consensus size: 317
17286718 CTCTCTGGTT
* * * * **
17286728 GGCTGAGTGTCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAA
1 GGCTCAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
17286793 GATCGGATCGGA-TCGAGGGTTACGGCAC-CAGGATCTGCAGCACGCAAGGGGGACCAGGCCGAT
66 GATCGGACCGAACTCAAGGGTTGCAGCACGCAGGATCGGCAGCACGCAGGGGGGACGA-GCCGAT
* * ** * * * * *
17286856 CCCCGGCTT-CTGCATTCTGCCTCTCCGACTGGTTGAGCGCCTGCACACCCGTTTCATGGGTTGG
130 CCCCGGCTTGC-GCATTCTGCCTCTTCGGCTGACTGAGCACCCGCACGCCCATTTCATGGATTGG
* *
17286920 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACGAGGGTTGTGGCAGTGAGACC
194 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGAGGGTTGTGGCAGCGAGACC
* * * * *
17286985 GACAACATGTAGAGGGGGACTGGGCCGATCTCCGGCTTGCACATTATGCCTCTAC-AGCC
259 GACAACATGCAGAGGGGGACTGAGCCGATCCCCAGCTTACACATTATGCCTCTACGA-CC
* *
17287044 GGCAT-AGTGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 GGC-TCAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
17287108 AGATCAGACCGAACT-AAGGGTTGC-G-ACGCAGGATCGGTAGGACGCAGGGGGGATCGAGCCGA
65 AGATCGGACCGAACTCAAGGGTTGCAGCACGCAGGATCGGCAGCACGCAGGGGGGA-CGAGCCGA
* *
17287170 TCCTCGGCTTGCGCATTCTGCCTCTTCGGCAGACTGAGCACCCGCACGCCCATTTCATGGATTGG
129 TCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGACTGAGCACCCGCACGCCCATTTCATGGATTGG
17287235 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGAGAC
194 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA-CGAGGGTTGTGGCAGCGAGAC
* * * * *
17287300 CGGCAGCATGCAGAGGGGGACTGAGCTGATCCCCAGCTTACGCATTATGCCTCTTCGACC
258 CGACAACATGCAGAGGGGGACTGAGCCGATCCCCAGCTTACACATTATGCCTCTACGACC
* * * * *
17287360 GGCTCTGCGCCCGCACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTCAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17287425 GATCGGACCGAACTGAAGGGTTGCAGTA-GCAGGATCGACAGCATGCAGGGGGGACCGAGCCAAT
66 GATCGGACCGAACTCAAGGGTTGCAGCACGCAGGATCGGCAGCACGCAGGGGGGA-CGAGCCGAT
* * * ** *
17287489 CCCCGGCTTGCACATTTTGCCTC-TCTGGCTGACTGAGCACCCGCACGCTCATTTTGTGGTTTGG
130 CCCCGGCTTGCGCATTCTGCCTCTTC-GGCTGACTGAGCACCCGCACGCCCATTTCATGGATTGG
***
17287553 CTTAGGCATACAAAGTTCATTCCATGTCTAAGC
194 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17287586 ATACGGAGTT
Statistics
Matches: 465, Mismatches: 65, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
314 2 0.00
315 122 0.26
316 212 0.46
317 14 0.03
318 114 0.25
319 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
GGCTCAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGAACTCAAGGGTTGCAGCACGCAGGATCGGCAGCACGCAGGGGGGACGAGCCGATC
CCCGGCTTGCGCATTCTGCCTCTTCGGCTGACTGAGCACCCGCACGCCCATTTCATGGATTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGAGGGTTGTGGCAGCGAGACCGA
CAACATGCAGAGGGGGACTGAGCCGATCCCCAGCTTACACATTATGCCTCTACGACC
Found at i:17287403 original size:159 final size:157
Alignment explanation
Indices: 17286741--17287585 Score: 579
Period size: 159 Copynumber: 5.3 Consensus size: 157
17286731 TGAGTGTCCA
* * ** ** ** *
17286741 CACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAACCGGA-
** * * * * *
17286806 CGAGGGTTACGGCA-CCAGGATCTGCAGCACGCA-AGGGGGAC-CAGGCCGATCCCCGGCTT-CT
65 CGAGGGTTGTGGCAGCGA-GACCGGCAGCATGCAGAGGGGGACTGA-GCCGATCCCCGGCTTGC-
* * * * *
17286867 GCATTCTGCCTCTCCGACTGGTTGAGCGCCTG
127 GCATTATGCCTCTTCGACCGGCT-AGCGCCCG
* * * * * *
17286899 CACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAATCGGA
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAACCGGA
* * * * * * *
17286963 CGAGGGTTGTGGCAGTGAGACCGACAACATGTAGAGGGGGACTGGGCCGATCTCCGGCTTGCACA
65 CGAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGACTGAGCCGATCCCCGGCTTGCGCA
* * *
17287028 TTATGCCTCTAC-AGCCGGCATAGTGCCCA
130 TTATGCCTCTTCGA-CCGGC-TAGCGCCCG
* * ** *
17287057 AACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAA
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCA-ACCGGA
* * * * * * * *
17287121 CTAAGGGTTGCGAC-GC-AGGATCGGTAGGACGCAG-GGGGGA-TCGAGCCGATCCTCGGCTTGC
65 C-GAGGGTTGTGGCAGCGA-GACCGGCAGCATGCAGAGGGGGACT-GAGCCGATCCCCGGCTTGC
* * * * *
17287182 GCATTCTGCCTCTTCGGCAGACTGAGCACCCG
127 GCATTATGCCTCTTCGACCGGCT-AGCGCCCG
* * * *
17287214 CACGCCCATTTCATGGATTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGA
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAACCGGA
* * *
17287278 TCGAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGACTGAGCTGATCCCCAGCTTACGC
65 -CGAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGACTGAGCCGATCCCCGGCTTGCGC
*
17287343 ATTATGCCTCTTCGACCGGCTCTGCGCCCG
129 ATTATGCCTCTTCGACCGGCT-AGCGCCCG
* * ** ** *
17287373 CACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAACCGGAC
** * * * * * *
17287438 TGAAGGGTTGCAGTAGC-AGGATCGACAGCATGCAG-GGGGGACCGAGCCAATCCCCGGCTTGCA
66 -G-AGGGTTGTGGCAGCGA-GACCGGCAGCATGCAGAGGGGGACTGAGCCGATCCCCGGCTTGCG
* * * * *
17287501 CATTTTGCCTC-TCTGGCTGACTGAGCACCCG
128 CATTATGCCTCTTC-GACCGGCT-AGCGCCCG
** * * **
17287532 CACGCTCATTTTGTGGTTTGGCTTAGGCATACAAAGTTCATT-CCATGTCTAAGC
1 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGC
17287586 ATACGGAGTT
Statistics
Matches: 532, Mismatches: 128, Indels: 53
0.75 0.18 0.07
Matches are distributed among these distances:
156 5 0.01
157 127 0.24
158 174 0.33
159 197 0.37
160 29 0.05
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAACCGGAC
GAGGGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGACTGAGCCGATCCCCGGCTTGCGCAT
TATGCCTCTTCGACCGGCTAGCGCCCG
Found at i:17288333 original size:26 final size:26
Alignment explanation
Indices: 17288281--17288333 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17288271 GTTGACTTAG
**
17288281 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
17288307 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
17288333 G
1 G
17288334 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:17288615 original size:159 final size:158
Alignment explanation
Indices: 17288342--17288651 Score: 422
Period size: 159 Copynumber: 2.0 Consensus size: 158
17288332 AGATTGGACC
* * *
17288342 GGACCGAGGGTTGTGACAGCAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGC
1 GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTAC
* * ** * * * *
17288407 GCATTTTACCTCTCCGGCTTGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGG
17288472 GAGTTCATTCCATGTCTAAGCCCCAGCT
131 GAGTTCATTCCATGTCTAAGCCCCAGCT
* * * *
17288500 GGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTA
1 GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCA-AGGGGGATCGGGTCGATCCCCGACTTA
* * * * * *
17288565 CGCATTATGCCTCTCCGACCGGCTTAGCACCGGTACACTCGTTTCATGGGTTGACTTAGGCATAT
65 CGCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAG
17288630 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
17288652 ATACGGAGTT
Statistics
Matches: 130, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
158 32 0.25
159 98 0.75
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTAC
GCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCT
Found at i:17288654 original size:26 final size:26
Alignment explanation
Indices: 17288624--17288676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17288614 GTTGACTTAG
*
17288624 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17288650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17288676 G
1 G
17288677 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17289410 original size:26 final size:26
Alignment explanation
Indices: 17289358--17289410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289348 GTTGACTTAG
**
17289358 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
17289384 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
17289410 G
1 G
17289411 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:17289700 original size:159 final size:158
Alignment explanation
Indices: 17289419--17289728 Score: 431
Period size: 159 Copynumber: 2.0 Consensus size: 158
17289409 AGATTGGACC
* * *
17289419 GGACCGAGGGTTGTGACAGCAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGC
1 GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTAC
* * ** * * * *
17289484 GCATTTTACCTCTCCGGCTTGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGG
17289549 GAGTTCATTCCATGTCTAAGCCCCAGCT
131 GAGTTCATTCCATGTCTAAGCCCCAGCT
* * *
17289577 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTA
1 GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCA-AGGGGGATCGGGTCGATCCCCGACTTA
* * * * * *
17289642 CGCATTATGCCTCTCCGACCGGCTTAGCACCGGTACACTCGTTTCATGGGTTGACTTAGGCATAT
65 CGCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAG
17289707 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
17289729 ATACGGAGTT
Statistics
Matches: 131, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
158 33 0.25
159 98 0.75
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTAC
GCATTATACCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCT
Found at i:17289731 original size:26 final size:26
Alignment explanation
Indices: 17289701--17289753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17289691 GTTGACTTAG
*
17289701 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17289727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17289753 G
1 G
17289754 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17290039 original size:171 final size:171
Alignment explanation
Indices: 17289727--17290095 Score: 422
Period size: 171 Copynumber: 2.2 Consensus size: 171
17289717 CCATGTCTAA
* *
17289727 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
* * * *
17289792 GTAGGATCAACAGCACGCAGGGGGGGACCAGGTCGATCTCCGACTTACGCATTCTACCTCTCTGG
66 GTAGGATCAACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCATTATACCTCTCCGG
* *
17289857 CCGACTGAGCGCCCGCATGCTCATTTCGTGGCTTGGCTTAG
131 CCGACTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTTAG
* * * *
17289898 GCATACGGAGTTCATT-CCATGTCTAAGCTCTAG-CCAGACCGAGGGTTGTGGTAGCATGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGCAGGACCAG
* ** * * * * *
17289961 CAGTGGGATCGGCTA-CACGCAGAGGGGGATC-GGGCTGATCCCCGACTTGCGTATTATGCCTCT
64 CAGTAGGATCAAC-AGCACGCAGAGGGGGACCAGGTC-GATCCCCGACTTACGCATTATACCTCT
* ** * * *
17290024 CCGGCTGGGTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
127 CCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTTAG
* *
17290069 GCATACGGAGTTCATCCCCAATCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
17290096 CATACGAGTT
Statistics
Matches: 165, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
170 6 0.04
171 153 0.93
172 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCA
GTAGGATCAACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCATTATACCTCTCCGG
CCGACTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTTAG
Found at i:17290107 original size:25 final size:26
Alignment explanation
Indices: 17290069--17290120 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17290059 GTTGACTTAG
17290069 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
17290095 GCATAC-GAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17290120 G
1 G
17290121 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17291307 original size:26 final size:26
Alignment explanation
Indices: 17291277--17291355 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17291267 GTTGACTTAG
*
17291277 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17291303 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17291329 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17291355 G
1 G
17291356 ATCGGATCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17297993 original size:26 final size:26
Alignment explanation
Indices: 17297957--17298007 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17297947 TGACTTAGGC
17297957 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
* *
17297983 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
17298008 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:17298676 original size:26 final size:26
Alignment explanation
Indices: 17298640--17298692 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17298630 GTTGACTTAG
17298640 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
17298666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17298692 G
1 G
17298693 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17299166 original size:684 final size:685
Alignment explanation
Indices: 17297745--17299167 Score: 1657
Period size: 685 Copynumber: 2.1 Consensus size: 685
17297735 GTGACACCTG
* * *
17297745 CACGCTCGTTTCGT-GGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGGCCCCAGCTGAA
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA-GCCCAAGCAGAA
*
17297809 CCGAGAGTTATGGCAGCAGGACCGATAACGGGATCGGTAGCACGCAGAGAGGGATCGGGCTGATC
65 CCGAGAGTTATGGCAGCAGGACCGATAACGAGATCGGTAGCACGCAGAGAGGGATCGGGCTGATC
* * * * * * * * * * **
17297874 CTCGACTTGCGCATTATACCTCTCCGGTTGGCCTCTCCGATCGGCTGTGTGCTCGTACACTCGTT
130 CTCAACTTGCACATTATACCTCTCCGATCGGCCTCTACGACCGACTGAGCGCCCACACACTCGTT
* *
17297939 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATACGGAGTTCATTCCTAGTC
195 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * *
17298004 TAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGAAACTGGGCCGA
260 TAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGAGGAAACCGGGCCGA
* * *
17298069 TCCCTGGCTTACGCATTCTGCCTCTCCCACCGGCTGAGTGCCCGCACACTCGTTCTGTGGGTTGG
325 TCCCCGGCTTACGCATTCTGCCTCTCCCACCAGCTGAGTGCCCGCACACCCGTTCTGTGGGTTGG
* * * *
17298134 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTCGCAGCGGAAC
390 CTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTCGCAGCGGAAC
*** * *
17298199 TGGCAGAATGTAGAGGGGGACCAGGCCAATACCCAGTTTGTGCATTATGCCTCTTCGGTCGGCTC
455 TGGCAGAACACAGAGGGGGACCAGGCCAATACCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTC
* * * * * *
17298264 AATCCCCGTATGCTCGTTTCATGGGTTGACTTATGCATATGAAGTTCATTCCCAGTCTAAGATCA
520 AAGCCCCGAACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * * ** * * * * *
17298329 GACCGAACTGAGGGTTATGATTGTAGGATCGACAGCACGCACGATAGACCGGGCTGATCCTTGGC
585 GACCAAACCGAGGGTTACGACAGTAAGATCGACAGCACGAACGAGAGACCGGGCAGATCCTCGGC
* *
17298394 TTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCA
650 TTGCGCATTCTACCTCTCCGATCGGTAGAGCGCCCA
* *
17298430 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCGTTACATGTCTAAGCCCAAGTCAG-
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCAAG-CAGA
* * * * * * * * *
17298493 ACCTAGGGTTGTGGTAGCAGGACCGGTAGCGAGATCGGTAGCACGTATAGGGGGATCGGGCTGAT
64 ACCGAGAGTTATGGCAGCAGGACCGATAACGAGATCGGTAGCACGCAGAGAGGGATCGGGCTGAT
* * * *
17298558 CC-CAAGCTTGCACATTATGCCTCTTCGATCGGCCTCTACGGCCGACTGAGCGCCCACACGCTCG
129 CCTCAA-CTTGCACATTATACCTCTCCGATCGGCCTCTACGACCGACTGAGCGCCCACACACTCG
* *
17298622 TTTCGTTGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
193 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * * *
17298687 TCTAAGATCAGACCAGACCGAGGGTTGCATTAGCAGAATCGACAGCACGTAGGGGGAACCGGGCC
258 TCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGAGGAAACCGGGCC
* ** ** * *
17298752 GATCCCCGTCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCCCGCCCGTT-TCGTGGG-
323 GATCCCCGGCTTACGCATTCTGCCTCTCCCACCAGCTGAGTGCCCGCACACCCGTTCT-GTGGGT
* * * * *
17298815 TGGCTTAGGCATAGGGAGTTCATTCCATCTCTCAGCCCAAGCCGGATAGAGGGTTGTGGCAGTGG
387 TGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTCGCAGCGG
* * * * * * * *
17298880 GA-TCGGTAGCACACAGAGGGTGACCGGGTCGAT-CCTC-GACTTGCGCATTATGCCTCTTTGGT
452 AACT-GGCAGAACACAGAGGGGGACCAGGCCAATACC-CAG-CTTGCGCATTATGCCTCTTCGGT
* * *
17298942 CGGCTC-AGCGTCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCT
514 CGGCTCAAGC-CCCGAACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * * * *
17299006 AAGATCGGATCAAACCGAGGGTTACGGCAGTAAGATCGACAGTATGTAAGGGGA-ACCGGGCCAG
578 AAGATCAGACCAAACCGAGGGTTACGACAGTAAGATCGACAGCACG-AACGAGAGACCGGG-CAG
* *
17299070 -TCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCTAG-GCGGCCG
641 ATCCTCGGCTTGCGCATTCTACCTCTCCGATCGG-TAGAGCGCCCA
* *
17299114 TACGCTCGTTCCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
17299168 ATACGAAATT
Statistics
Matches: 613, Mismatches: 112, Indels: 27
0.82 0.15 0.04
Matches are distributed among these distances:
683 6 0.01
684 278 0.45
685 295 0.48
686 34 0.06
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (685 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAAGCAGAAC
CGAGAGTTATGGCAGCAGGACCGATAACGAGATCGGTAGCACGCAGAGAGGGATCGGGCTGATCC
TCAACTTGCACATTATACCTCTCCGATCGGCCTCTACGACCGACTGAGCGCCCACACACTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTGCAGCAGCAGAATCGACAGCACGCAGAGGAAACCGGGCCGAT
CCCCGGCTTACGCATTCTGCCTCTCCCACCAGCTGAGTGCCCGCACACCCGTTCTGTGGGTTGGC
TTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTCGCAGCGGAACT
GGCAGAACACAGAGGGGGACCAGGCCAATACCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCA
AGCCCCGAACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
ACCAAACCGAGGGTTACGACAGTAAGATCGACAGCACGAACGAGAGACCGGGCAGATCCTCGGCT
TGCGCATTCTACCTCTCCGATCGGTAGAGCGCCCA
Found at i:17300590 original size:26 final size:26
Alignment explanation
Indices: 17300554--17300606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17300544 GTTGGCTTAG
17300554 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17300580 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17300606 G
1 G
17300607 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17300909 original size:171 final size:170
Alignment explanation
Indices: 17300616--17300927 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 170
17300606 GATCAGACCA
* * * *
17300616 GACCGAGGGGTTGCGCAGCAGGACCAGCTATAGGATGGACAGCACGTAGGGGGGACCGGGCCAAT
1 GACCGAGGGGTTGCGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGACCGGGCCAAT
** * * * ** * ** *
17300681 CCCCGGCTTGTGCATTCTGCCTCTCTGGTCAACTGAGTGCCCGTACACTGGTTTCATGGGTTGGC
66 CCCCGGCTTGCACATTATGCCTCTCCGGCCAACTGAGCCCCCGCACACTCATTTCATGGGTTGAC
*
17300746 TTAGGCATACGAAGTCCATTCCATGTCTATGCCCCAGTCG
131 TCAGGCATACGAAGTCCATTCCATGTCTATGCCCCAGTCG
* * * **
17300786 GACCGA-GGGTTGTGGCAGCAGGACCAGCAACGGGATCGATAGCACGCAGAGGGGGACCGGGCTG
1 GACCGAGGGGTTG-CGCAGCAGGACCAGCAACAGGATCGACAGCACGCAG-GGGGGACCGGGCCA
** **
17300850 ATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGCCCCCGCATGCTCATTTCATGGGTTG
64 ATCCCCGGCTTGCACATTATGCCTCTCCGGCCAACTGAGCCCCCGCACACTCATTTCATGGGTTG
17300915 ACTCAGGCATACG
129 ACTCAGGCATACG
17300928 TAGTTCATCC
Statistics
Matches: 115, Mismatches: 25, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
169 6 0.05
170 35 0.30
171 74 0.64
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (170 bp):
GACCGAGGGGTTGCGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGGGGGGACCGGGCCAAT
CCCCGGCTTGCACATTATGCCTCTCCGGCCAACTGAGCCCCCGCACACTCATTTCATGGGTTGAC
TCAGGCATACGAAGTCCATTCCATGTCTATGCCCCAGTCG
Found at i:17302459 original size:159 final size:159
Alignment explanation
Indices: 17302242--17302675 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 159
17302232 GCACGTAGGG
* * ** * * ** * * *
17302242 GGGATCGGGTCGATTCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCGACCGCACGCCCG
1 GGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCG
* * * **
17302307 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGT
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGT
* * * * *
17302371 TGTGGCAGTGGGACCGGCAGCGCGCAGAGGT
131 TGCGACAGTAGGACC-G-AGAGCACAGAGGT
** * *
17302402 -GGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTTAGCTCAGTGCCCGCACGCTCG
1 GGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCG
* * * *
17302466 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCAAACCGAGGG
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGG
* * *
17302529 TTGCGACAGTAGGATCGATAGCACATAGGT
130 TTGCGACAGTAGGACCGAGAGCACAGAGGT
* * * * *
17302559 GGGGACTGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCGCACGTAC
1 -GGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACG--C
* **
17302624 GCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCA
63 -C-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
17302676 TACAGAGTTC
Statistics
Matches: 220, Mismatches: 44, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 9 0.04
158 3 0.01
159 162 0.74
160 3 0.01
161 1 0.00
162 3 0.01
163 38 0.17
164 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGCACGCCCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGT
TGCGACAGTAGGACCGAGAGCACAGAGGT
Found at i:17303139 original size:158 final size:158
Alignment explanation
Indices: 17302805--17304360 Score: 829
Period size: 159 Copynumber: 9.6 Consensus size: 158
17302795 GTGCGCTCGT
* ** *
17302805 ACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCTTTCCATGTCTAAGCCCCAG--CCAG
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCA-GTCTAAG-ATCAGATCGA-
* * * *
17302867 ACCGAGGGTTGTGGCAGCTGGACC-AGCAGCACACAGAGGGGGACC-GACCTAATCCCC-AGCTT
62 ACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCAGGCC-GATCCCCGA-CTT
* * * * *
17302929 GCACATTATGCCTCTTCGGCCGGCTCAGTGCCCGT
124 GCGCATTATGCCTCTCCGGCCGGCTGACTGCCCGC
* * *
17302964 AC-CCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCACTCTAAGATCAGATCGAAC
1 ACGCC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGAAC
* * * *
17303028 CGAGGGTTGTGACAGCAGGACCGACGGCACGCAG-GGGGGATCAGGCCGGTCCCCGACTTGCGCA
64 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCA
* *
17303092 TTCTGCCTCTCCAGCCGGCTGACTGCCCGC
129 TTATGCCTCTCCGGCCGGCTGACTGCCCGC
* * ** * *
17303122 ACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGAAC
* * *
17303186 CGAGGGTTGTGGCAGCAGGACC-AGCAGCATGCAGAGGGGGACCAGGCCAATCCCCGGCTTGCGC
64 CGAGGGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGC
* *
17303250 ATTCTGCCTCTCCGGTCGGCTGAGC-GCCCGC
128 ATTATGCCTCTCCGGCCGGCTGA-CTGCCCGC
* * **
17303281 ACGCCCGTTTTGTGGGTTGGCTTAGGCATA-GGCAATTCATTCCATGTCTAAGCCCTAGA-C-AG
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCA-GTCTAAGATC-AGATCGA-
* * * *
17303343 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCC-AGCTTGC
62 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGA-CTTGC
* * * * * * *
17303407 ACATTATTCCTTTTC-GCCTAGCTCAGTGCCCGC
126 GCATTATGCCTCTCCGGCC-GGCTGACTGCCCGC
* * * * * * *
17303440 ACACTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGATCGGA-CTGGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATC-GAAC
* * * * * * * * * * * *
17303504 CGAGGGTTGCGGTAGTAGGATCGACAGCACGCAG-GAGGGATCGGGTCGGTCCTCGGCTTGTGCA
64 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCA
* * * *
17303568 TTATGCCTCTCTGGTCGGTTGAAC-GCCCGT
129 TTATGCCTCTCCGGCCGGCTG-ACTGCCCGC
* *
17303598 ACGCTCGTTTCGTGGGTTGGCTTAGGCCATACAGAGTTCATTCCAGTCTAAGATCAGATC-AGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGG-CATACGGAGTTCATTCCAGTCTAAGATCAGATCGA-AC
* * * * *
17303662 CGAAGGTTGCAATAGCAGGACTAGCAACAGGATCGACAGCACGCAG-GAGGGACCGGGCTGATCC
64 CGAGGGTTG---T----GG-C-AG---CAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCC
* * * * *
17303726 CCGGCTTGCGCA-TATTACCTCTCCAGCCGACTAAGC-GCCCGC
117 CCGACTTGCGCATTA-TGCCTCTCCGGCCGGCTGA-CTGCCCGC
**
17303768 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGAT-ATGGAGTTC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA-GATCA--GA--TC
* * ** * * * *
17303832 -ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCAGTGGCACGCAGGAGG
60 GA-ACCGAGGGT-TG-T-GG--C--AGC-A-GG--ACCG-A-CA-G--CA--CGCA-G-AGG-GG
* * * * * * * * * * * *
17303896 GATCGGGCTGATCCCCGGCTTGTGCATTCTGCCGCTTCAGTCAGCTGAGC-CCCCGC
103 GACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGA-CTGCCCGC
* * ** *
17303952 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAAAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGAAC
* * * * * * ** *
17304016 TGAGGGTTCTGGCAACCA-GACTGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGTTTACGC
64 CGAGGGTTGTGGC-AGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGC
* ** * *
17304080 ATTATGCCTCTTCGGCTAGCTTAGTGCCCGC
128 ATTATGCCTCTCCGGCCGGCTGACTGCCCGC
* * * * * * *
17304111 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCGA-CCAAAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGAACC
** * * ** * * * *
17304175 GAGGGTTACGGTAGCAGGATCGATGGCAGGCA-AGGGGGGATCAGGTCGATCCCCGGCTTGCGCA
65 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGA-GGGGGACCAGGCCGATCCCCGACTTGCGCA
* **
17304239 TTCTGCCTCTCCGATCGGCTGAAC-GCCCGC
129 TTATGCCTCTCCGGCCGGCTG-ACTGCCCGC
* * * * ** *
17304269 ACGCTCATTTCGTGGGTTGGCTTAGGTATACGGTGTTCATTCCATGTCTAAGCCCCAG--CCAGA
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGA-A
*
17304332 CCGAGGGTTGTGGCAGCAAGACCGACAGC
63 CCGAGGGTTGTGGCAGCAGGACCGACAGC
17304361 GCGATTGGTA
Statistics
Matches: 1091, Mismatches: 223, Indels: 166
0.74 0.15 0.11
Matches are distributed among these distances:
157 9 0.01
158 332 0.30
159 455 0.42
160 18 0.02
161 1 0.00
162 2 0.00
164 2 0.00
165 2 0.00
166 1 0.00
167 4 0.00
168 1 0.00
169 24 0.02
170 94 0.09
171 7 0.01
172 3 0.00
173 5 0.00
174 11 0.01
175 4 0.00
176 1 0.00
177 2 0.00
178 3 0.00
180 9 0.01
181 2 0.00
183 3 0.00
184 94 0.09
185 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGATCGAACCG
AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATT
ATGCCTCTCCGGCCGGCTGACTGCCCGC
Found at i:17303349 original size:317 final size:315
Alignment explanation
Indices: 17302745--17303819 Score: 980
Period size: 317 Copynumber: 3.4 Consensus size: 315
17302735 GTAGCAAATA
* * * * * * *
17302745 GGGGGACTGGGCTGATCCTC-AGCTTGCGTATTCTGCCTCTCCTGCTGGCTG--TGCGCTCGTAC
1 GGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCAGCCGGCTGACTGC-C-CGCAC
* **
17302807 GCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCTTTCCATGTCTAAGCCCCAGCCAGACCG
63 GCCCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAGCTGGACCG
* * * * *
17302871 AGGGTTGTGGCAGCTGGACCAGCAGCACACAGAGGGGGACCGACCTAATCCCCAGCTTGCACATT
127 AGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACCGGCC-AATCCCCGGCTTGCGCATT
* * * * * * *
17302936 ATGCCTCTTCGGCCGGCTCAGTGCCCGTAC-CCTCGTTTCGTGGGTTGACTTATGCATACGG-AG
191 ATGCCTCTCCGGTCGGCTGAGCGCCCGTACGCC-CGTTTCGTGGGTTGGCTTAGGCATA-GGCAA
* *
17302999 TTCATTCCCACTCTAAGATCAGATC-GAACCGAGGGTTGTGACAGCAGGACCGACGGCACGCAG
254 TTCATT-CCAGTCTAAGATCAGATCAG-ACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAG
* * *
17303062 GGGGGATCAGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGACTGCCCGCACGCC
1 GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGACTGCCCGCACGCC
* *
17303127 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
* *
17303192 TTGTGGCAGCAGGACCAGCAGCATGCAGAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGC
131 TTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACC-GGCCAATCCCCGGCTTGCGCATTATGC
* *
17303257 CTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGCAATTCATT
195 CTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAATTCATT
** * * *
17303322 CCATGTCTAAGCCCTAGA-CAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG
260 CCA-GTCTAAGATC-AGATCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAG
* * * * * * * * *
17303379 AGGGGGACCGGGTCGATCCCC-AGCTTGCACATTATTCCTTTTC-GCCTAGCTCAGTGCCCGCAC
1 -GGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCAGCC-GGCTGACTGCCCGCAC
* * * * * ** *
17303442 ACTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCA-GTCTAAG-ATCGGACTGGACC
63 GCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACC
* * * * * * * ** * *
17303505 GAGGGTTGCGGTAGTAGGATC-GACAGCACGCAG-GAGGGATCGGGTCGGTCCTCGGCTTGTGCA
126 GAGGGTTGTGGCAGCAGGACCAG-CAGCACGCAGAGGGGGA-CCGGCCAATCCCCGGCTTGCGCA
* * * *
17303568 TTATGCCTCTCTGGTCGGTTGAACGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCCATA--CA
189 TTATGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGG-CATAGGCA
* *
17303631 GAGTTCATTCCAGTCTAAGATCAGATCAGACCGAAGGTTGCAATAGCAGGACTAGCAACAGGATC
253 -A-TTCATTCCAGTCTAAGATCAGATCAGACCGAGGGTTG---T-----GAC-AG---CAGGACC
17303696 GACAGCACGCAG
304 GACAGCACGCAG
* * * * * *
17303708 GAGGGACCGGGCTGATCCCCGGCTTGCGCATAT-TACCTCTCCAGCCGACTAAGC-GCCCGCACG
1 GGGGGACCGGGCCGATCCCCGACTTGCGCAT-TCTGCCTCTCCAGCCGGCTGA-CTGCCCGCACG
**
17303771 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
64 CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17303820 GATATGGAGT
Statistics
Matches: 618, Mismatches: 102, Indels: 65
0.79 0.13 0.08
Matches are distributed among these distances:
316 10 0.02
317 348 0.56
318 143 0.23
319 6 0.01
320 1 0.00
325 2 0.00
326 2 0.00
327 3 0.00
328 83 0.13
329 20 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (315 bp):
GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGACTGCCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
TTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGACCGGCCAATCCCCGGCTTGCGCATTATGCC
TCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAATTCATTC
CAGTCTAAGATCAGATCAGACCGAGGGTTGTGACAGCAGGACCGACAGCACGCAG
Found at i:17303649 original size:476 final size:476
Alignment explanation
Indices: 17302766--17303819 Score: 1230
Period size: 476 Copynumber: 2.2 Consensus size: 476
17302756 CTGATCCTCA
* * * * *
17302766 GCTTGCGTATTCTGCCTCTCCTGCTGGCTGTGCGCTCGTACGCCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* * *
17302831 CATAGGAAGTTCTTTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCTGGACCAGCAG
66 CATAGGAAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCGGGACCAGCAG
*
17302896 CACACAGAGGGGGACCGACCTAATCCCCAGCTTGCACATTATGCCTCTTCGGCCGGCTCAGTGCC
131 CACACAGAGGGGGACCGACCTAATCCCCAGCTTGCACATTATGCCTCTTCGGCCAGCTCAGTGCC
* * * *
17302961 CGTACCCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCACTCTAAGATCAGATCGA
196 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGATCGA
* * *
17303026 ACCGAGGGTTGTGACAGCAGGACCGACGGCACGCAGGGGGGATCAGGCCGGTCCCCGACTTGCGC
261 ACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGAGGGATCAGGCCGGTCCCCGACTTGCGC
* * **
17303091 ATTCTGCCTCTCCAGCCGGCTGACTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGA
326 ATTATGCCTCTCCAGCCGGCTGACTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGA
17303156 GTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGA
391 GTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGA
17303221 GGGGGACCAGGCCAATCCCCG
456 GGGGGACCAGGCCAATCCCCG
*
17303242 GCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* *
17303306 GCATAGGCAA-TTCATTCCATGTCTAAGCCCTAGACAGACCGAGGGTTGTGGCAGCGGGACCGGC
65 GCATAGG-AAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCGGGACCAGC
* ** * * *
17303370 AGCACGCAGAGGGGGACCG-GGTCGATCCCCAGCTTGCACATTATTCCTTTTC-GCCTAGCTCAG
129 AGCACACAGAGGGGGACCGACCT-AATCCCCAGCTTGCACATTATGCCTCTTCGGCC-AGCTCAG
* * *
17303433 TGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGATCGGA
192 TGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGA
* ** * * * * * *
17303498 -CTGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGAGGGATCGGGTCGGTCCTCGGCT
257 TC-GAACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGAGGGATCAGGCCGGTCCCCGACT
* ** * * * *
17303562 TGTGCATTATGCCTCTCTGGTCGGTTGAAC-GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCC
321 TGCGCATTATGCCTCTCCAGCCGGCTG-ACTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG-C
** * * * * * *
17303626 ATACAGAGTTCATTCCA-GTCTAAG-ATCAGATCAGACCGAAGGTTGCAATAGCAGGACTAGCAA
384 ATACAGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTG---TGGCA-G-C-AGGAC
* * **
17303689 CAGGATCGACA-GCACGCAGGAGGGACCGGGCTGATCCCCG
442 CAGCA--G-CATGCA-G-AGG-GGGACCAGGCCAATCCCCG
* * * * * **
17303729 GCTTGCGCATAT-TACCTCTCCAGCCGACTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCAT-TCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
17303793 GCATACGG-AGTTCATTCCATGTCTAAG
65 GCATA-GGAAGTTCATTCCATGTCTAAG
17303820 GATATGGAGT
Statistics
Matches: 486, Mismatches: 68, Indels: 37
0.82 0.12 0.06
Matches are distributed among these distances:
475 10 0.02
476 338 0.70
477 20 0.04
479 4 0.01
480 1 0.00
481 1 0.00
482 7 0.01
484 4 0.01
485 3 0.01
486 4 0.01
487 91 0.19
488 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (476 bp):
GCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
CATAGGAAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCGGGACCAGCAG
CACACAGAGGGGGACCGACCTAATCCCCAGCTTGCACATTATGCCTCTTCGGCCAGCTCAGTGCC
CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGATCGA
ACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGAGGGATCAGGCCGGTCCCCGACTTGCGC
ATTATGCCTCTCCAGCCGGCTGACTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCATGCAGA
GGGGGACCAGGCCAATCCCCG
Found at i:17304687 original size:684 final size:672
Alignment explanation
Indices: 17303147--17305007 Score: 2142
Period size: 671 Copynumber: 2.8 Consensus size: 672
17303137 GTTGGCTTAG
* * ** * * * *
17303147 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAGGATCAGCA
* *
17303212 GCATGCAGAGGGGGACC-AGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
66 GCACGCAG-GGGGGACCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * * *
17303276 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGCAATTCATTCCATGTCTAAGCCCTAGAC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
* * *
17303341 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTG
194 AGACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
* * * *
17303406 CACATTATTCCTTTTCGCCTAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
259 CGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
* * * * * *
17303471 GGATTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGC
324 GGAGTTCATTCCAAGTCTAAGATCGGAC-CGAACGAGGGTTGCGGTAGCAGGATCGATAGCACGC
* * * * * * * * * *
17303536 -AGGAGGGATCGGGTCGGTCCTCGGCTTGTGCATTATGCCTCTCTGGTCGGTTGAACGCCCGTAC
388 AAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCAC
* *
17303600 GCTCGTTTCGTGGGTTGGCTTAGGCCATACAGAGTTCATTCCA-GTCTAAG-ATCAGATCAGACC
453 GCTCGTTTCGTGGGTTGGCTTAGG-CATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACC
* * * * *
17303663 GAAGGTTGCAATAGCAGGACTAGCAACAGGATCGACAGCACGCAGGAGGGACCGGGCTGATCCCC
517 GAAGGTTGCAACAGCAAGACGAGCAACAGGATCGACAGCACGCAGGAGGGACCAGACTGATCCCC
* * * *
17303728 GGCTTGCGCATATTACCTCTCCAGCCGACTAAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
582 GGCTTGCACATATTACCTCTCCAGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
17303793 GCATACGGAGTTCATTCCATGTCTAA
647 GCATACGAAGGTCATCCCATGTCTAA
* * * * * * **
17303819 GGATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCAGTG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * * * * * * * *
17303884 GCACGCAGGAGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCGCTTCAGTCAGCTGAGCCCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
17303949 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAG
* * * * * * * * * * *
17304014 ACTGAGGGTTCTGGCAACCAGACTGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGTTTACG
196 ACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCG
* * *
17304079 CATTATGCCTCTTCGGCTAGCTTAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGG
261 CATTATGCCTCTTCGGCTAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
17304144 AGTTCATTCCAAGTCTAAGATCCGACCAAACGAGGGTTACGGTAGCAGGATCGATGGCAGGCAAG
326 AGTTCATTCCAAGTCTAAGATCGGACCGAACGAGGGTTGCGGTAGCAGGATCGATAGCACGCAAG
17304209 GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCACGCT
391 GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCACGCT
* * * * * *
17304274 CATTTCGTGGGTTGGCTTAGGTATACGGTGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGG
456 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAG
*** * * ** * * *
17304338 GTTGTGGCAGCAAGACCGA-CAGC-GCGATTGGTAGCATGCAGAGGGGGACCAGACTGAT-CCTG
521 GTTGCAACAGCAAGA-CGAGCAACAG-GATCGACAGCACGCAG-GAGGGACCAGACTGATCCCCG
** * *
17304400 GCTTGCACATTATGCCTCTCCGATCGGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
583 GCTTGCACA-TA----T-T---A----CCTCTCCAGCCGACTAAGCGCCCGCACGCTCGTTTCAT
*
17304465 GGGTTGACTTAGGCATATGAAGGTCATCCCCA-GTCTAA
635 GGGTTGACTTAGGCATACGAAGGTCAT-CCCATGTCTAA
* * * *
17304503 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGATCAAGGGTTGCAGCAGTAGGATC-GAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAGGATCAG-C
*
17304567 AGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CTGGCTGAGCG
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCG
* * *
17304631 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
17304696 AGACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
194 AGACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
* * ** * *
17304761 CGCATTATGCCTCTTCAGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATAC
259 CGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
** * ** * *
17304826 GGAGTTCATTCTGAGTTTAAGATCGGACCGGATTGAGGGTTGCGGCAGCAGGATGGATAGCACGC
324 GGAGTTCATTCCAAGTCTAAGATCGGACC-GAACGAGGGTTGCGGTAGCAGGATCGATAGCACGC
* * * * * * *
17304891 ACGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCGCAC
388 AAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCAC
* * *
17304956 GCTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCA
453 GCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
17305008 TATGGAGTTC
Statistics
Matches: 980, Mismatches: 185, Indels: 35
0.82 0.15 0.03
Matches are distributed among these distances:
670 44 0.04
671 364 0.37
672 77 0.08
676 1 0.00
677 1 0.00
680 1 0.00
683 2 0.00
684 358 0.37
685 132 0.13
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (672 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAGGATCAGCA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAG
ACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCG
CATTATGCCTCTTCGGCTAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCAAGTCTAAGATCGGACCGAACGAGGGTTGCGGTAGCAGGATCGATAGCACGCAAG
GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAAG
GTTGCAACAGCAAGACGAGCAACAGGATCGACAGCACGCAGGAGGGACCAGACTGATCCCCGGCT
TGCACATATTACCTCTCCAGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGAAGGTCATCCCATGTCTAA
Found at i:17304797 original size:159 final size:159
Alignment explanation
Indices: 17304544--17305007 Score: 510
Period size: 159 Copynumber: 2.9 Consensus size: 159
17304534 AACTGGATCA
* * * * *
17304544 AGGGTTGCAGCAGTAGGATC-GACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATT
1 AGGGTTGCGGCAGCAGGA-CGGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATT
* * * * *
17304608 CTGCCTCTCCGGCTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTTCAGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
*
17304673 CATTCCATGTCTAAGCCCCAG-CCAGACTG
130 CATTCCATGTCTAAGCACCAGACCAGACTG
*
17304702 AGGGTTGTGGCAGC-GAGACCGG-CAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCA
1 AGGGTTGCGGCAGCAG-GA-CGGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * * *
17304765 TTATGCCTCTTCAGCTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAG
63 TTCTGCCTCTTCAGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * * * *
17304830 TTCATTCTGA-GTTTAAG-ATCGGACCGGATTG
128 TTCATTC-CATGTCTAAGCACCAGACCAGACTG
* * * * *
17304861 AGGGTTGCGGCAGCAGGATGGATAGCACGCACGGGGGGATCAGGTCGATCCCCGGCTTGCACATT
1 AGGGTTGCGGCAGCAGGACGGACAGCACGCA-GGGGGGACCGGGTCGATCCCCGGCTTGCGCATT
* * * * * *
17304926 CTACCTC-TCCGACCGACTGAGCACCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACAGAGT
65 CTGCCTCTTCAG-CTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
17304990 TTATTCCATGTCTAAGCA
129 TCATTCCATGTCTAAGCA
17305008 TATGGAGTTC
Statistics
Matches: 253, Mismatches: 42, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
157 1 0.00
158 32 0.13
159 216 0.85
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGTTGCGGCAGCAGGACGGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTC
TGCCTCTTCAGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCAGACTG
Found at i:17305008 original size:26 final size:26
Alignment explanation
Indices: 17304979--17305031 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17304969 GTTGGCTTAG
*
17304979 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
17305005 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17305031 G
1 G
17305032 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17305719 original size:26 final size:26
Alignment explanation
Indices: 17305683--17305734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17305673 TGGCTGAGGC
*
17305683 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGAAGTTCATTCCCA-GTCTAAGA
17305709 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
17305735 TTAGACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:17306077 original size:26 final size:26
Alignment explanation
Indices: 17306048--17306100 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17306038 GTTGACTTAG
* *
17306048 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17306074 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17306100 G
1 G
17306101 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17306527 original size:158 final size:155
Alignment explanation
Indices: 17306076--17306571 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 155
17306066 CAGTCTAAGC
* * *
17306076 ATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAAGGTTGTGGCAGCCGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCA-ACCAGACC-AAGGTTGTGGCAGCAGGATCGACAG
* * * * *
17306140 CACGCA-GGGAGGACCGGGCCGATCCCTGTCTTGTGCATTCTACCTCTCCGATCGACTGAACGCC
63 CACGCAGGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCC
* * *
17306204 CCCACG-TCCTTTTCGTGGGTTCGC-T-TC
128 CGCACGCTCGTTTT-GTGGGTT-GCTTATG
* * ** * * *
17306231 ATAGGGAGTTCATTCCATGTGTAAGCCCCAGCCAGACCGAGGTTGTGGCAGCAGGACCGACAGCA
1 ATACGGAGTTCATTCCATGTCTAAG-ATCAACCAGACCAAGGTTGTGGCAGCAGGATCGACAGCA
* * * * * * * *
17306296 CGCTGAGGGGGACCGGGCCGATCCCCGACTTGTGGATTATGCCTTTTCGGTCGACTCAGCGCCCG
65 CGCAGGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCG
* * *
17306361 TACACTCGTTTTGTTGGTTGACTTATG
130 CACGCTCGTTTTGTGGGTTG-CTTATG
* * *
17306388 ATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCAAGGGTTGCGGTAGCAGGATCGACAA
1 ATACGGAGTTCATT-CCATGTCTAAGATC-AACCAGACCAA-GGTTGTGGCAGCAGGATCGACAG
* * * * * *
17306452 CACGCAGGGGGGGACTGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGA-CCAGCTGAGCGG
63 CACGCAGGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGA-CTGAGCGC
* *
17306516 CCGCACGCTCGTTTCGTGGGTTGGCTTAGG
127 CCGCACGCTCGTTTTGTGGGTT-GCTTATG
17306546 CATACGGAGTTCATTCCATGTCTAAG
1 -ATACGGAGTTCATTCCATGTCTAAG
17306572 CATATGGAGT
Statistics
Matches: 269, Mismatches: 58, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
154 31 0.12
155 80 0.30
156 10 0.04
157 31 0.12
158 95 0.35
159 22 0.08
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAACCAGACCAAGGTTGTGGCAGCAGGATCGACAGCAC
GCAGGGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGC
ACGCTCGTTTTGTGGGTTGCTTATG
Found at i:17306581 original size:26 final size:26
Alignment explanation
Indices: 17306545--17306597 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17306535 GTTGGCTTAG
17306545 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17306571 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17306597 G
1 G
17306598 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17306687 original size:11 final size:11
Alignment explanation
Indices: 17306668--17306699 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
17306658 CTGGGGCACT
17306668 ATCATCGGAGC
1 ATCATCGGAGC
*
17306679 ATCACCGGAGC
1 ATCATCGGAGC
17306690 ATCATCGGAG
1 ATCATCGGAG
17306700 AGCCTAACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (11 bp):
ATCATCGGAGC
Found at i:17314401 original size:159 final size:158
Alignment explanation
Indices: 17313900--17314402 Score: 450
Period size: 159 Copynumber: 3.2 Consensus size: 158
17313890 ACCAGTCTAA
* *
17313900 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGAT-AGAGGGTTGCGGCAGCAGGATCGA
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACCGGATCA-AGGGTTGCGGTAGCAGGATCGA
* ** * * *
17313963 TAGCAC--ACAGGGGGGATCGACCCGATCCCTAGCTTGCGCATTCTGCCTCTCTGGTCAGCTGAG
64 CAGCACGTA-AGGGGGGATCG-GGCGATCCCCAGCTTACGCATTCTGCCTCTCTGCTCAGCTGAG
* *
17314026 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
17314058 GCATAGGGTGTTGATTCCATTTCTAAG-TGCCAG-CCAGA-CTGAGGGTTGTGGTAGCGGGACCG
1 GCATATGGAGTTCATTCCATGTCTAAGAT--CAGACCGGATC-AAGGGTTGCGGTAGCAGGATCG
* * * *
17314120 ACAGCACGT-AGAGGGCGATCGGGCAGATCCCCAGCTTACACATTATGCCTCTCCAGC-CAGCTC
63 ACAGCACGTAAG-GGGGGATCGGGC-GATCCCCAGCTTACGCATTCTGCCTCT-CTGCTCAGCT-
** * * * * *
17314183 GA-CGCCCATATGGTCATTTCATGGGTTGACTTAG
124 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
17314217 GCATATAGAGTTCATTCCAAATCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGGATCGACA
1 GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGATCGACA
* * * *
17314282 GCACGTAAGGGGGGATAGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGCTCGGCTGAGTGC
66 GCACGTAAGGGGGGATCGGG-CGATCCCCAGCTTACGCATTCTGCCTCTCTGCTCAGCTGAGCGC
* *
17314347 CCGCACACTCGTTTCGTGGATTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17314376 GCAAATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
17314403 CATACGGAGT
Statistics
Matches: 264, Mismatches: 63, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 195 0.74
160 9 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGATCGACA
GCACGTAAGGGGGGATCGGGCGATCCCCAGCTTACGCATTCTGCCTCTCTGCTCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17314773 original size:26 final size:26
Alignment explanation
Indices: 17314743--17314795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17314733 GTTGACTTAG
*
17314743 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17314769 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17314795 G
1 G
17314796 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17316425 original size:159 final size:159
Alignment explanation
Indices: 17316262--17316617 Score: 396
Period size: 159 Copynumber: 2.2 Consensus size: 159
17316252 CGTACGCCCG
*
17316262 TTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGACCTAG-CCAGACTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGA-CTAGACCAGACTGAGGGT
** * * * * * *
17316326 TGTGGCAACGGGA-CTAGCAGCACA-TAGAGGGGGATCAGGTTGATCCCTGGCTTGCGCATTATG
65 TGCAGCAACAGGATC-AACAGCACACAAG-GGGGGATCAGGCTGATCCCCGGCTTGCACATTATG
** *
17316389 CCTCTCCGGTAGGCTCAGCGCCCACACGCTCA
128 CCTCTCCGACAGGCTAAGCGCCCACACGCTCA
* * * * *
17316421 TTTCATGGGTTGACTTAGGCATACAGAGTTTATTCTCA-GTCTAAGATTGGACCAGTCTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTC-CATGTCTAAGACTAGACCAGACTGAGGGT
* ** * *
17316485 TGCAGTAGTAGGATCAACAGCACACAAGGGGGGATCAGGCTGATCCCCGGTTTGCACATTCTGCC
65 TGCAGCAACAGGATCAACAGCACACAAGGGGGGATCAGGCTGATCCCCGGCTTGCACATTATGCC
* * *
17316550 TCTCCGACCGGCTAAGCGCCCGCACGCTCG
130 TCTCCGACAGGCTAAGCGCCCACACGCTCA
** *
17316580 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCAT
17316618 ATCTTAGCAT
Statistics
Matches: 162, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 4 0.02
159 153 0.94
160 5 0.03
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGACTAGACCAGACTGAGGGTT
GCAGCAACAGGATCAACAGCACACAAGGGGGGATCAGGCTGATCCCCGGCTTGCACATTATGCCT
CTCCGACAGGCTAAGCGCCCACACGCTCA
Found at i:17317297 original size:157 final size:159
Alignment explanation
Indices: 17317048--17317348 Score: 398
Period size: 159 Copynumber: 1.9 Consensus size: 159
17317038 CCGGATCGAA
* * * *
17317048 GGTTGCGGCAGTAGGATCGGTAGCATGCAAGAGGGATCGGGCCGATCCCCGACTTGCACATCTGC
1 GGTTGCGGCAGTAGGACCGGCAGCATGCAAGAGGGACCGGGCCGATCCCCGACTTGCACATATGC
* * *
17317113 CTCTCCGGATGGCTGAGCGCCCGCACAC-CT-GTTTCG-AGGGTTGGCTTAGGCATAGGGAGTTC
66 CTCTCCGGACGGCTAAGCGCCCGCACACGCTCGTTTCGTA-GGTTGGCTTAGGCATACGGAGTTC
17317175 ATTCCATGTCTAAGCCCCAGTCAGACCGAG
130 ATTCCATGTCTAAGCCCCAGTCAGACCGAG
* * * **
17317205 GGTTGTGGCAGTAGGACCGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCGTCTTGTGCATTAT
1 GGTTGCGGCAGTAGGACCGGCAGCATGCA-AGAGGGACCGGGCCGATCCCCGACTTGCACA-TAT
* *
17317270 GCCTCTCC-GACCGGCTAAGCG-CC-CACACGCTCGTTTTGTAGGTTGGCTTAGGCATACTGAGT
64 GCCTCTCCGGA-CGGCTAAGCGCCCGCACACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGT
17317332 TCATTCCATGTCTAAGC
128 TCATTCCATGTCTAAGC
17317349 ATATAGAGTT
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
157 31 0.25
158 32 0.26
159 60 0.48
160 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GGTTGCGGCAGTAGGACCGGCAGCATGCAAGAGGGACCGGGCCGATCCCCGACTTGCACATATGC
CTCTCCGGACGGCTAAGCGCCCGCACACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAGTCAGACCGAG
Found at i:17318360 original size:159 final size:158
Alignment explanation
Indices: 17318017--17318384 Score: 438
Period size: 159 Copynumber: 2.3 Consensus size: 158
17318007 GAACGCCCGT
* * *
17318017 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATC
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATC
* * *
17318082 GAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATT
66 GAGGGTTGCGGTAGCAGGACCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATT
* * *
17318147 CTACCTCTCCGATCGGCTGAGTGCTCGC
131 ATACCTCTCCGATCGGCTCAGCGCTCGC
* * * *
17318175 ACGC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGA
1 ACGCTC-GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCGGA
* * * *
17318238 -CTGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
64 TC-GAGGGTTGCGGTAGCAGGACCGGCAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCG
* ** *
17318302 CGTTATGGCTCTTCGATCGGCTCAGCGC-CTGC
127 CATTATACCTCTCCGATCGGCTCAGCGCTC-GC
* * * *
17318334 ATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
17318385 TATTTTGAGC
Statistics
Matches: 176, Mismatches: 27, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
157 5 0.03
158 79 0.45
159 88 0.50
160 4 0.02
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATC
GAGGGTTGCGGTAGCAGGACCGGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATT
ATACCTCTCCGATCGGCTCAGCGCTCGC
Found at i:17319085 original size:26 final size:26
Alignment explanation
Indices: 17319056--17319108 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17319046 GTTGACTTAG
*
17319056 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
17319082 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17319108 G
1 G
17319109 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17319613 original size:26 final size:26
Alignment explanation
Indices: 17319583--17319635 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17319573 GTTGACTTAG
*
17319583 GCATACAAAGTTCATCCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
17319609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
17319635 G
1 G
17319636 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:17319969 original size:158 final size:158
Alignment explanation
Indices: 17319682--17319977 Score: 339
Period size: 158 Copynumber: 1.9 Consensus size: 158
17319672 CAACACGCAT
* * * * * *
17319682 GGGGGATCGAGCTGATCCCTGGCTTGTGCATTCTACCTCTCTGGCCGACCGAGCGCTCGCACGCC
1 GGGGGACCGAGCTGATCCCTGGCTTGTGCATTATACCTCTCTGACCGACCGAGCACCCGCACACC
* * * * * * *
17319747 CGTTTCGTGGGGTGGCTTAGCCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGAACTGAGGG
66 CGTTTCATGGGGTGACTTAGCCATAGGGAGTTCATTCCTAGTCTAAGCACCAGACCAACCGAGGG
*
17319812 TTGTGGCAGCGGGACCGACAGACGTAGA
131 TTGCGGCAGCGGGACCGACAGACGTAGA
* *
17319840 GGGGGACCGAGCTGATCCCTGGCTTGTGCATTATGCCTCT-TCGATCGACTC-AGCACCCGCACA
1 GGGGGACCGAGCTGATCCCTGGCTTGTGCATTATACCTCTCT-GACCGAC-CGAGCACCCGCACA
* * * * *
17319903 CTCGTTTCATGGGTTGACTTATG-CATATGGAGTTCATTCCTAGTCTAAG-ATCGGACCAGACCG
64 CCCGTTTCATGGGGTGACTTA-GCCATAGGGAGTTCATTCCTAGTCTAAGCACCAGACCA-ACCG
17319966 AGGGTTGCGGCA
127 AGGGTTGCGGCA
17319978 CCAGGATTGA
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
157 5 0.04
158 106 0.94
159 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGGACCGAGCTGATCCCTGGCTTGTGCATTATACCTCTCTGACCGACCGAGCACCCGCACACC
CGTTTCATGGGGTGACTTAGCCATAGGGAGTTCATTCCTAGTCTAAGCACCAGACCAACCGAGGG
TTGCGGCAGCGGGACCGACAGACGTAGA
Found at i:17320133 original size:26 final size:26
Alignment explanation
Indices: 17320084--17320136 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17320074 GTTGGCTTGG
***
17320084 GCATACGGAGTTCATTCTGTGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17320110 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
17320136 G
1 G
17320137 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:17321576 original size:158 final size:156
Alignment explanation
Indices: 17321102--17321995 Score: 604
Period size: 158 Copynumber: 5.6 Consensus size: 156
17321092 CCCAGTCTAA
* ** ** *
17321102 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA-ACCGGATCGAGGGTTGCGGCAGCAGGATCGGTA
* * *
17321167 GCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCTCGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGC-CC
*
17321232 C-GCACGCCCGTTTTATGGGTTGGCTTAG
129 CTGCACGCCCGTTTCATGGGTT-GCTTAG
** * * * * * *
17321260 GCATAGGGAGTCCATT-CCATGTCTAAGCCTCAGCCGGACCGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAACCGGATCGAGGGTTGCGGCAGCAG-GATCGG
* * * * * * * * * *
17321323 TAGGACACAGAAGGGGATCGGGCCGATCCCTGGCCTGCGCATTATACCTCTCCGACCGACTCAGC
63 TAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGC
* * * *
17321388 ACCTGTACGCTCGTTTCGTGGGTTGACTTAG
127 CCCTGCACGCCCGTTTCATGGGTTG-CTTAG
* * * *
17321419 GCATACATAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-AACCGGATCGAGGGTTGCGGCAGCAGGATCGGTA
** * * * *
17321484 GCACGCAGGGGGGA-CTGGGCTAATCCCCGGCTTACGCATTCTGCCTCTTCGGTTGGCTGAGCCC
65 GCACGCAGGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCCC
17321548 CTGCACGCCCGTTTCATGGGTTAGCTTAG
129 CTGCACGCCCGTTTCATGGGTT-GCTTAG
** * * * * * * * * * *
17321577 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGAACCGTGGGTTGTGGTAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGA--TCAACCGGATCGAGGGTTGCGGCAGCAGGATCGG
* ** * * * * * *
17321640 CAGCACATAGAGGGGGATCGGGTCGATCTCCAGCTTGCGCATTATGCCTCTCCGGCCT-GCTCAA
63 TAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGG-CTGGCT-GA
* ** *
17321704 TG-TCC-GCACGCTCATTTTCGTGGGTTGACTTAG
125 -GCCCCTGCACGC-CCGTTTCATGGGTTG-CTTAG
* ** * **
17321737 GCATACAGAGTTCATTCCCACTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAACCGGATCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * ** * * * * *
17321802 GCA--CATCGAGGGATCGGGTCGGTCTTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
65 GCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCCC
* * *
17321865 CTGCACGCTCATTTCGTGGGTTGGCTTAG
129 CTGCACGCCCGTTTCATGGGTT-GCTTAG
* * * * * * *
17321894 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAACGAGGGTTGTGGTAGTAGGATTGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCA-ACCGG-ATCGAGGGTTGCGGCAGCAGGATCGGT
* * *
17321959 AACACGTAGAGGGGGATCGGGCCGATCCCTGGCTTGC
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGC
17321996 ATGTTCTGCC
Statistics
Matches: 559, Mismatches: 144, Indels: 64
0.73 0.19 0.08
Matches are distributed among these distances:
156 2 0.00
157 57 0.10
158 239 0.43
159 163 0.29
160 93 0.17
161 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCCCCT
GCACGCCCGTTTCATGGGTTGCTTAG
Found at i:17321841 original size:317 final size:315
Alignment explanation
Indices: 17321102--17321919 Score: 934
Period size: 317 Copynumber: 2.6 Consensus size: 315
17321092 CCCAGTCTAA
* ** * * ** *
17321102 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
17321167 GCACGCAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCTCGCTGAGCGCC
66 GCAC-CAGGGGGGATCGG-GCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGC-CC
* * * *
17321232 C-GCACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCTCAGCCG
128 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
* ** * *
17321296 GACCGAGGGTTGTGGCAGCGAGACCGGTAGGACACAGAAGGGGATCGGGCCGATCCCTGGCCTGC
193 AACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGATCGGGCCGATCCCTAGCCTGC
*
17321361 GCATTATACCTCTCCGACCGACTCAGCACCTGTACGCTCGTTTCGTGGGTTGACTTAG
258 GCATTATACCTCTCCGACCGACTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
17321419 GCATACATAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
* * *
17321484 GCACGCAGGGGGGA-CTGGGCTAATCCCCGGCTTACGCATTCTGCCTCTTCGGTTGGCTGAGCCC
66 GCAC-CAGGGGGGATC-GGGC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCCC
*
17321548 CTGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
128 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
* * * * * * *
17321613 AACCGTGGGTTGTGGTAGCGGGACCGACAGCACATAGAGGGGGATCGGGTCGATCTCC-AGCTTG
193 AACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGATCGGGCCGATC-CCTAGCCTG
* * * *
17321677 CGCATTATGCCTCTCCGGCCTG-CTCAATG-TCC-GCACGCTCATTTTCGTGGGTTGACTTAG
257 CGCATTATACCTCTCCGACC-GACTC-A-GCACCTGCACGCTC-GTTTCGTGGGTTGACTTAG
* *
17321737 GCATACAGAGTTCATTCCCACTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * *
17321802 GCA-CATCGAGGGATCGGGTCGGTCTTCGGCTTGCGCATTCTGCCTC-TCTGACCGGCTGAGCAC
66 GCACCA-GGGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCTGGCTGAGCCC
* * * *
17321865 CTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
128 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
17321920 GATCAGACCG
Statistics
Matches: 424, Mismatches: 64, Indels: 26
0.82 0.12 0.05
Matches are distributed among these distances:
316 9 0.02
317 323 0.76
318 91 0.21
319 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACCAGGGGGGATCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCCCCTG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGAAC
CGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAAGGGGATCGGGCCGATCCCTAGCCTGCGCA
TTATACCTCTCCGACCGACTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17322460 original size:26 final size:26
Alignment explanation
Indices: 17322409--17322461 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17322399 GTTGGCTTAG
*
17322409 GCGTACAGAGTTCATTCCATGTCTAA
1 GCGTACAGAGTTCATTCCATGCCTAA
*
17322435 GCGTACGGAGTTCATTTCCA-GCCTAA
1 GCGTACAGAGTTCA-TTCCATGCCTAA
17322461 G
1 G
17322462 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCGTACAGAGTTCATTCCATGCCTAA
Found at i:17323651 original size:26 final size:26
Alignment explanation
Indices: 17323621--17323676 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17323611 TGGTTTGACT
*
17323621 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
17323647 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
17323673 TAAG
1 TAAG
17323677 ATCGAATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:17324172 original size:26 final size:26
Alignment explanation
Indices: 17324134--17324186 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324124 GGCTCAAAAT
17324134 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
17324160 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
17324186 C
1 C
17324187 CTCATCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17324462 original size:159 final size:159
Alignment explanation
Indices: 17324159--17324517 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
17324149 AACTCTGTAT
* * *
17324159 GCTTAGACATGGAATGAACTTCGTATGCCTCA-TCCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAATGAGCGTGCGGGCACTCA
* * *
17324223 ACCGGTCGAAGAGGCAGATTGCGAAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATC
65 ACCGGTCGAAGAGGCAGAATGCGAAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATC
* * ** * *
17324288 CTTGCTGTCGTAGCCCTCGATCCGGTCT-GA
130 CTTACTGCCACAGCCCTCGAT-CAGACTGGA
* * *
17324318 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCA
* * * * * * *
17324382 GCCGG-CTGGAGAGGCATAATGCGCAAGTCAGGGATCGA-TCGAGTCCCCCTCTACGTGCTGTCG
65 ACCGGTC-GAAGAGGCAGAATGCGAAAGCCAGGGATCGACCCG-GTCCCCC-CTACATGCTGTCG
* * * *
17324445 GTCC-TACTGCCACAGCCCTTGGTCAGACTGGG
127 ATCCTTACTGCCACAGCCCTCGATCAGACTGGA
* *
17324477 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA
17324518 CAAAACAGGC
Statistics
Matches: 164, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 8 0.05
159 140 0.85
160 16 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAA
CCGGTCGAAGAGGCAGAATGCGAAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
TTACTGCCACAGCCCTCGATCAGACTGGA
Found at i:17325842 original size:159 final size:159
Alignment explanation
Indices: 17325382--17325885 Score: 525
Period size: 159 Copynumber: 3.2 Consensus size: 159
17325372 AACTCCGTAT
* *
17325382 GCTTAGACATGAAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
17325447 CCGGCCGGAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGT-CCCCCCTGCGTGCTATCGATC
66 ACGGACGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCCTGCGTGCTGCCGATC
* * **
17325511 CTACTACTGCAGCCCTCAATCCGGTCTGA
131 CTACTACCGCAACCCTCGGTCCGGTCTGA
* * * * *
17325540 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * *
17325604 -ACCGACCAGAGAGGCATAATGCGCAAGCCGAGGATCGGCTGGGTCCCCCTTTGCGTGTTGCCGG
65 GACGGA-CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCCTGCGTGCTGCCGA
* * * * *
17325668 TCCTGC-AGCCACAACCCTTGGTCTGG-CTGGG
129 TCCTACTA-CCGCAACCCTCGGTCCGGTCT-GA
* * * **
17325699 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17325764 TCGGACGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTTGATCCCCCCCTGCGTGCTGCCGATC
66 ACGGACGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCCTGCGTGCTGCCGATC
*
17325829 CTACTACCGCAACCCTCGGTCCGGTCCGA
131 CTACTACCGCAACCCTCGGTCCGGTCTGA
* *
17325858 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17325886 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 91 0.33
159 173 0.63
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
ACGGACGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCCTGCGTGCTGCCGATC
CTACTACCGCAACCCTCGGTCCGGTCTGA
Found at i:17325895 original size:26 final size:26
Alignment explanation
Indices: 17325859--17325911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17325849 CCGGTCCGAT
*
17325859 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17325885 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17325911 C
1 C
17325912 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17326622 original size:26 final size:26
Alignment explanation
Indices: 17326580--17326632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17326570 GGCTTAAAAT
* *
17326580 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17326606 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17326632 C
1 C
17326633 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17326967 original size:159 final size:157
Alignment explanation
Indices: 17326605--17327107 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 157
17326595 AACTCTGTAT
* *
17326605 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * *
17326670 CCGATCGGAAAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCC
65 CCGATCCGAAAGGCAGAATGCGAAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCC
**
17326735 TGCTGCCACAACCCTCGATCTGGTCTAA
130 CACTGCCACAACCCTCGATCTGGTCTAA
* * * * * * *
17326763 TCTTATACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACTAGCGTACGGGCACTGAG
1 GCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * ** ** * *
17326828 CCGA-CCGAAGAGGCATAATGCGAAAGTCGTGGATCGGCTTGGTCCCCCTCTGCGTGCTGCCGGT
65 CCGATCCGAA-AGGCAGAATGCGAAAGCCAAGGATCGGCCCGATCCCCCT-TGCGTGCTGCCGAT
**
17326892 CCCACTGCCACAACCCTCGATCTGG-CTGGG
128 CCCACTGCCACAACCCTCGATCTGGTCT-AA
* * * * **
17326922 GCTTAGAGATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACG-GACGTGCAGGTGCTCA
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCACTCA
* * * * * ** * * * *
17326986 ACCGAT-CGAAGAGACAAAATGTGTAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGCCAAT
64 GCCGATCCGAA-AGGCAGAATGCGAAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGAT
** * * * *
17327050 CCTGCTACCATAACCCTCGGTCTAGTCTAA
128 CCCACTGCCACAACCCTCGATCTGGTCTAA
* * *
17327080 TCTTAGACTGGGAATGAACTTCGTATGC
1 GCTTAGAAT-GGAATGAACTCCGTATGC
17327108 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 144 0.53
159 122 0.45
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
CGATCCGAAAGGCAGAATGCGAAAGCCAAGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCCC
ACTGCCACAACCCTCGATCTGGTCTAA
Found at i:17327117 original size:26 final size:26
Alignment explanation
Indices: 17327081--17327132 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17327071 CTAGTCTAAT
*
17327081 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17327107 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17327133 TCGAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17327491 original size:26 final size:26
Alignment explanation
Indices: 17327462--17327512 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17327452 CCGATCTGAT
*
17327462 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
17327488 CTTAGACATGGATTGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
17327513 CCCTAAGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.