Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 120 of 138
Found at i:17327999 original size:26 final size:26
Alignment explanation
Indices: 17327963--17328015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17327953 TCGATCTGAT
*
17327963 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17327989 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17328015 C
1 C
17328016 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17328662 original size:26 final size:26
Alignment explanation
Indices: 17328626--17328695 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
17328616 GCCCCACCGG
17328626 TTAGACTGGGAATGAACTCCATAAGC
1 TTAGACTGGGAATGAACTCCATAAGC
17328652 TTAGACTGGGAATGAACTCCATAAGC
1 TTAGACTGGGAATGAACTCCATAAGC
*
17328678 TTAGACTGGGGATGAACT
1 TTAGACTGGGAATGAACT
17328696 TCGTATGCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATAAGC
Found at i:17329495 original size:25 final size:26
Alignment explanation
Indices: 17329451--17329502 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17329441 CCAGTCTGAT
*
17329451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17329477 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17329502 C
1 C
17329503 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17330221 original size:26 final size:26
Alignment explanation
Indices: 17330183--17330235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17330173 GGCTCAAACT
* *
17330183 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17330209 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17330235 C
1 C
17330236 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17338149 original size:26 final size:26
Alignment explanation
Indices: 17338111--17338163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17338101 GGCTCAAAAT
17338111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17338137 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17338163 C
1 C
17338164 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17338626 original size:158 final size:156
Alignment explanation
Indices: 17338137--17338628 Score: 449
Period size: 158 Copynumber: 3.1 Consensus size: 156
17338127 ACTCCGTATG
* * * *
17338137 CTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAGCGAGCGTGCAGGCACTCAAC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCAGC
* * * * *
17338202 CGGTCGGAG-GACAGAATGCGCAAGCCGGGGATCAG-CTCGGTCCCCTCTGTGTGCTGTCTATCC
65 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCT-GGTCCCCCCTGCGTGCTGTCGATCC
* **
17338265 TACTGTCGCAACCATCGGTCCAGTCCAAT
129 TACTGTCGCAACCCTCGGTCC-GTCTGAT
* * * * * *
17338294 CTTAGAC-TGGGAATGAACTC-CTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTG-CGGCGCTCAG
* * * * * * * *
17338357 CCGGTCGAAGAGG-AATAATGCGCAAGCTGGGGATCAACCCGATCCCCCTCTGCATGCTGTTGGT
64 CCGGTCGGAGAGGCAA-AATGCGCAAGCCGGGGATCAGCCTGGTCCCCC-CTGCGTGCTGTCGAT
* * * **
17338421 CCCACTGCCACAACCCTCGGTCC-TACTGGGG
127 CCTACTGTCGCAACCCTCGGTCCGT-CT-GAT
* * * *
17338452 CTTACACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG-CGCTCAGC
* * * * *
17338517 CGGTCGGAGAGGCAAAATTCGTAAGCCAGAGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
* *
17338582 GCTGTCGCAGCCCTCGGTCCGGTCTGAT
130 ACTGTCGCAACCCTCGGTCC-GTCTGAT
17338610 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
17338629 TCATATGGTT
Statistics
Matches: 258, Mismatches: 62, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 44 0.17
157 46 0.18
158 96 0.37
159 69 0.27
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCTCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCGCTCAGCC
GGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGTCGCAACCCTCGGTCCGTCTGAT
Found at i:17339152 original size:183 final size:184
Alignment explanation
Indices: 17338806--17339166 Score: 465
Period size: 183 Copynumber: 2.0 Consensus size: 184
17338796 TCCGATTGGG
* * * * *
17338806 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTCAA
* * * * ** * * * **
17338871 CCAGCCGAAGAGGTAGAATGTGCAAGCTGGGGATCGGTTCTATCCCTCCTGCGTGCTGTTGATCC
66 CCAGCCGAAGAGGTAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTGTCAATCC
* * * *
17338936 TGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGATTAGGAATGAACTCTATAT
131 TGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCTATAT
* * *
17338990 GCTTGGACATGGATTGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGAACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTCAA
*
17339055 CCGGCC--AGAAGGTAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTGTCAATC
66 CCAGCCGAAG-AGGTAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTGTCAATC
**
17339118 CTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACT
130 CTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACT
17339167 TTGTATGCCT
Statistics
Matches: 150, Mismatches: 26, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
182 2 0.01
183 86 0.57
184 62 0.41
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTCAA
CCAGCCGAAGAGGTAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTGTCAATCC
TGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCTATAT
Found at i:17340221 original size:26 final size:26
Alignment explanation
Indices: 17340183--17340235 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17340173 GGTGCAAAAT
17340183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17340209 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17340235 C
1 C
17340236 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17340578 original size:26 final size:25
Alignment explanation
Indices: 17340527--17340578 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
17340517 CTGGTCTGAT
* * *
17340527 CTTAGATTGGGAATGAACTTGTATG
1 CTTAGACTGGGAATGAACTAGAATG
*
17340552 CTTAGACTGGGGATGAACTCAGAATG
1 CTTAGACTGGGAATGAACT-AGAATG
17340578 C
1 C
17340579 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTAGAATG
Found at i:17341282 original size:159 final size:156
Alignment explanation
Indices: 17340919--17341335 Score: 393
Period size: 159 Copynumber: 2.6 Consensus size: 156
17340909 AACTCCGTAT
*
17340919 GCTTAGACATGGAATGAACTCCC-ATTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTA-TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
17340983 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGA-CAGGTCCGGTTCCCCCTACGTGCTATCGAT
65 GCTGGCCGGAGAGGCAGAATGCGCAAGC--GGGATC-GGTCCAGTTCCCCCTACGTGCTAGCCAT
* * *
17341047 CCTGCTATCGCAACCCTCGATCCGATCTGA
127 CCCGCTACCACAACCCTCGATCCGATCTGA
* * * * * * *
17341077 TCTTAGAC-TGGGAATGAACTCCGTATGACTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *
17341141 GCTGGCCGGAGAGGCATAATGCGCAAGTCGAGGATCGG-CTCAG-TCCCCCTTTGCGTGCT-GCC
65 GCTGGCCGGAGAGGCAGAATGCGCAAG-CG-GGATCGGTC-CAGTTCCCCC--TACGTGCTAGCC
* * * *
17341203 ACTCCCGCTACCATAACCTTCGGTCC-AGT-TGGG
125 A-TCCCGCTACCACAACCCTCGATCCGA-TCT-GA
* * *
17341236 GCTTAGACATGGAATGAACTCCCTATGCCTACGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
17341301 -TCGGCTGGAGAGGCAGAATGCGTAAGCCGGGATCG
66 CT-GGCCGGAGAGGCAGAATGCGCAAG-CGGGATCG
17341336 ACCCGATCCC
Statistics
Matches: 210, Mismatches: 36, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
157 9 0.04
158 94 0.45
159 106 0.50
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCGGGATCGGTCCAGTTCCCCCTACGTGCTAGCCATCCCG
CTACCACAACCCTCGATCCGATCTGA
Found at i:17342153 original size:26 final size:26
Alignment explanation
Indices: 17342115--17342167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17342105 GGCTCAAAAT
*
17342115 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17342141 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
17342167 C
1 C
17342168 CTACGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17342645 original size:26 final size:26
Alignment explanation
Indices: 17342616--17342717 Score: 125
Period size: 26 Copynumber: 3.9 Consensus size: 26
17342606 TGATCCGATT
17342616 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
17342642 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* * ** *
17342668 CTAAACTGGGAATGAACTTTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGC
*
17342694 TTAGCCAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
17342718 ACCTAAGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
26 62 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17342709 original size:52 final size:52
Alignment explanation
Indices: 17342620--17342723 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
17342610 CCGATTTTAG
* *
17342620 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAA
** * *
17342672 ACTGGGAATGAACTTTGTATGTTTAGCCAT-GGAATGAACTCCGTATACCTAA
1 ACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATACCTAA
17342724 GCCAACCCAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 44 0.98
53 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (52 bp):
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAA
Found at i:17343743 original size:26 final size:26
Alignment explanation
Indices: 17343705--17343757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17343695 GGCTCAAAAT
*
17343705 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17343731 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17343757 C
1 C
17343758 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17344356 original size:159 final size:157
Alignment explanation
Indices: 17344026--17344336 Score: 457
Period size: 159 Copynumber: 2.0 Consensus size: 157
17344016 GATCCTGCAA
* *
17344026 CCACAACCCTCGGTCTGGCTGGGGTTAGGCATGGAATGAACTCCCTATACCTAAGCCAACCCATG
1 CCACAACCCTCGGTCTGGCTGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATG
* * * *
17344091 AAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGAT
66 AAACGGGCATGAGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGAT
*
17344156 CCTCCCGACGTGCTGCCGATCCCACTG
131 CCCCCCGACGTGCTGCCGATCCCACTG
17344183 CCACAACCCTCGGTCTGGCTGTGGCTTAGACATGGAATGAACTCCCTATGA-CTAAGCCAACCCA
1 CCACAACCCTCGGTCTGGCTG-GGCTTAGACATGGAATGAACTCCCTAT-ACCTAAGCCAACCCA
* * * *
17344247 TGAAACGGGCATGTAGGGCACTCAGTCGGCCGGAGA-GCTAGAATGCGTAAGCTGAGGATCTGCC
64 TGAAACGGGCATG-AGGGCACTCAGCCGGCCGGAGAGGC-AGAATGCGCAAGCCGAGGATCAGCC
17344311 CGATCCCCCCTG-CGTGCTGCCGATCC
127 CGATCCCCCC-GACGTGCTGCCGATCC
17344337 TGCTGTCGTA
Statistics
Matches: 138, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
157 21 0.15
158 52 0.38
159 64 0.46
160 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (157 bp):
CCACAACCCTCGGTCTGGCTGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATG
AAACGGGCATGAGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGAT
CCCCCCGACGTGCTGCCGATCCCACTG
Found at i:17344371 original size:159 final size:157
Alignment explanation
Indices: 17343729--17344359 Score: 436
Period size: 158 Copynumber: 4.0 Consensus size: 157
17343719 GAACTTCGTA
* * * * * *
17343729 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGCACG-GGTG--C
1 TGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACG-G-GCATGAGG-GCAC
* * * * * * * * *
17343791 TCAGTCGGCCAGAGAGGCAAAATGTC-CAAGCCGGGGATCGGCCCGGGATCTCCCCTATGTGCTA
63 TCAGCCGGCCGGAGAGGCAGAATG-CGCAAGCCGAGGATCAGCCC--GATCCCCCCGACGTGCTG
** * * **
17343855 TTGATCCTACTGCCACAACCCTCGATCCGATTCG
125 CCGATCCCACTGCCACAACCCTCGGTCCGGCT-G
* * * * * * * * * **
17343889 AT-CTTAGAC-TAAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
1 -TGCTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGAGGGCACT
* * ** * * * * * * * **
17343952 GAGCCGGTCAAAGAGGTATAATGCGCAAGCCGAGGATCGGCCTAGTTCCCCTCTG-CATGCTATC
64 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCC-CGATCCCC-CCGACGTGCTGCC
** ** *
17344016 GATCCTGCAACCACAACCCTCGGTCTGGCTG
127 GATCCCACTGCCACAACCCTCGGTCCGGCTG
* * * * *
17344047 GGGTTAGGCATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 TGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGAGGGCACTCA
* * *
17344112 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCTCCCGACGTGCTGCCGATC
66 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGACGTGCTGCCGATC
*
17344177 CCACTGCCACAACCCTCGGTCTGGCTG
131 CCACTGCCACAACCCTCGGTCCGGCTG
17344204 TGGCTTAGACATGGAATGAACTCCCTATGA-CTAAGCCAACCCATGAAACGGGCATGTAGGGCAC
1 T-GCTTAGACATGGAATGAACTCCCTAT-ACCTAAGCCAACCCATGAAACGGGCATG-AGGGCAC
* * * *
17344268 TCAGTCGGCCGGAGA-GCTAGAATGCGTAAGCTGAGGATCTGCCCGATCCCCCCTG-CGTGCTGC
63 TCAGCCGGCCGGAGAGGC-AGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC-GACGTGCTGC
** * **
17344331 CGATCCTGCTGTCGTAACCCTCGGTCCGG
126 CGATCCCACTGCCACAACCCTCGGTCCGG
17344360 TCTGATCTTA
Statistics
Matches: 376, Mismatches: 79, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 38 0.10
158 139 0.37
159 120 0.32
160 76 0.20
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGAGGGCACTCA
GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGACGTGCTGCCGATC
CCACTGCCACAACCCTCGGTCCGGCTG
Found at i:17344380 original size:159 final size:158
Alignment explanation
Indices: 17343729--17344391 Score: 429
Period size: 159 Copynumber: 4.2 Consensus size: 158
17343719 GAACTTCGTA
* * * * * *
17343729 TGCTTAGACATGGAATGAACTCCGTATG-CCTAAGCTAACCTACGAAACGAGCGCACG-GGTG--
1 TGCTTAGACATAGAATGAACTCCCTATGACCTAAGCCAACCCATGAAACG-G-GCATGAGG-GCA
* * * * * * * *
17343790 CTCAGTCGGCCAGAGAGGCAAAATGTC-CAAGCCGGGGATCGGCCCGGGATCTCCCCTATGTGCT
63 CTCAGCCGGCCGGAGAGGCAGAATG-CGCAAGCCGAGGATCAGCCC--GATCCCCCCGACGTGCT
*** * * **
17343854 ATTGATCCTACTGCCACAACCCTCGATCCGATTCG
125 GCCGATCCCACTGCCACAACCCTCGGTCCGGCT-G
* * * * * * * **
17343889 AT-CTTAGAC-TAAGAATGAACTCCGTATG-CATAAGTCAACCCACGAAACGAGCGTGCGGGCGT
1 -TGCTTAGACAT-AGAATGAACTCCCTATGACCTAAGCCAACCCATGAAACGGGCATGAGGGCAC
* * ** * * * * * * * **
17343951 TGAGCCGGTCAAAGAGGTATAATGCGCAAGCCGAGGATCGGCCTAGTTCCCCTCTG-CATGCTAT
64 TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCC-CGATCCCC-CCGACGTGCTGC
** ** *
17344015 CGATCCTGCAACCACAACCCTCGGTCTGGCTG
127 CGATCCCACTGCCACAACCCTCGGTCCGGCTG
* * * * * *
17344047 GGGTTAGGCATGGAATGAACTCCCTAT-ACCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTC
1 TGCTTAGACATAGAATGAACTCCCTATGACCTAAGCCAACCCATGAAACGGGCATGAGGGCACTC
* * *
17344111 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCTCCCGACGTGCTGCCGAT
66 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGACGTGCTGCCGAT
*
17344176 CCCACTGCCACAACCCTCGGTCTGGCTG
131 CCCACTGCCACAACCCTCGGTCCGGCTG
*
17344204 TGGCTTAGACATGGAATGAACTCCCTATGA-CTAAGCCAACCCATGAAACGGGCATGTAGGGCAC
1 T-GCTTAGACATAGAATGAACTCCCTATGACCTAAGCCAACCCATGAAACGGGCATG-AGGGCAC
* * * *
17344268 TCAGTCGGCCGGAGA-GCTAGAATGCGTAAGCTGAGGATCTGCCCGATCCCCCCTG-CGTGCTGC
64 TCAGCCGGCCGGAGAGGC-AGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC-GACGTGCTGC
** * **
17344331 CGATCCTGCTGTCGTAACCCTCGGTCCGGTCTG
127 CGATCCCACTGCCACAACCCTCGGTCCGG-CTG
* *
17344364 AT-CTTAGA-TTAAGAATGAACTCCGTATG
1 -TGCTTAGACAT-AGAATGAACTCCCTATG
17344392 CTTAGATTGG
Statistics
Matches: 402, Mismatches: 81, Indels: 40
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.00
157 38 0.09
158 140 0.35
159 141 0.35
160 79 0.20
161 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TGCTTAGACATAGAATGAACTCCCTATGACCTAAGCCAACCCATGAAACGGGCATGAGGGCACTC
AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGACGTGCTGCCGAT
CCCACTGCCACAACCCTCGGTCCGGCTG
Found at i:17344395 original size:26 final size:26
Alignment explanation
Indices: 17344366--17344418 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17344356 CCGGTCTGAT
17344366 CTTAGATTAAGAATGAACTCCGTATG
1 CTTAGATTAAGAATGAACTCCGTATG
** * *
17344392 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTAAGAATGAACTCCGTATG
17344418 C
1 C
17344419 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTAAGAATGAACTCCGTATG
Found at i:17344845 original size:367 final size:364
Alignment explanation
Indices: 17344376--17345062 Score: 793
Period size: 367 Copynumber: 1.9 Consensus size: 364
17344366 CTTAGATTAA
* * * * * *
17344376 GAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCGAAGTCAACTCACGAAACGAG
1 GAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCGAAGCCAACTCACAAAACAAG
* * *
17344441 CATGCGGGCCCTCAGTCAGTCGGAGAGGCATAATGCACAAATCGGGGATCAGCTCGATCCCC-CT
66 CATGCGGGCCCTCAGTCAGTCGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGATCCCCTC-
* * *
17344505 CTGCTTGCTGCCGATCCCGC--CATCGGTCCTACTGCCACAACCC-T-C-AGTCCGACTAGGGCT
130 CTGCATGCTACCGATCCCGCTGC-T-GGTCCTACTGCAACAACCCTTCCTAGTCCGA-T----CT
* * * *
17344565 TAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAATGAACGTGCAGGCGCTCAGTC
188 TAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAACGTGCAGGCGCCCAG-C
* * * *
17344629 -GACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCTTACGTGCTGTCAATCCT
251 AGACCAGAGAGGCAGAATGCGCAAGTCAGAGATCGACCCGATCCCCC-TACGTGCTGTCAATCCT
17344693 GCTGCTGGTCCTTCTACCACAACCCTCGATCTAATCTGATCTTATACTGG
315 GCTGCTGGTCCTTCTACCACAACCCTCGATCTAATCTGATCTTATACTGG
* *
17344743 GAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC-CAACAAAACA
1 GAATGAACTCCGTATGCTTAGA-ATGGGAATGAACTCCGTATGCCGAAGCCAACTC-ACAAAACA
** * * * * * *
17344806 AGCATGCGGGTGCTTAG-CTGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCC
64 AGCATGCGGGCCCTCAGTC-AGTCGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGATCCCC
* *
17344870 TCCTGCATGCTACTGATCCTGCTGCTGGTCCTACTGCAACAACCCTTGCCTAGTCCGATCTTAGA
128 TCCTGCATGCTACCGATCCCGCTGCTGGTCCTACTGCAACAACCCTT-CCTAGTCCGATCTTAGA
* * ** * * * *
17344935 CTAGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGTGTGCGGGTGCCCAGCAGGCCG
192 CTAGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAACGTGCAGGCGCCCAGCAGACCA
*
17345000 GAGAGGCAGAATGCGCAAGTCAGAGATCGGCCCGATCCCCCTACGTGCTGTCAATCCTGCTGC
257 GAGAGGCAGAATGCGCAAGTCAGAGATCGACCCGATCCCCCTACGTGCTGTCAATCCTGCTGC
17345063 AGCAACCCTC
Statistics
Matches: 267, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
365 23 0.09
366 93 0.35
367 137 0.51
368 4 0.01
369 1 0.00
370 2 0.01
371 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (364 bp):
GAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCGAAGCCAACTCACAAAACAAG
CATGCGGGCCCTCAGTCAGTCGGAGAGGCAGAATGCACAAACCGGGGATCAGCCCGATCCCCTCC
TGCATGCTACCGATCCCGCTGCTGGTCCTACTGCAACAACCCTTCCTAGTCCGATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAACGTGCAGGCGCCCAGCAGACCAGAGA
GGCAGAATGCGCAAGTCAGAGATCGACCCGATCCCCCTACGTGCTGTCAATCCTGCTGCTGGTCC
TTCTACCACAACCCTCGATCTAATCTGATCTTATACTGG
Found at i:17344932 original size:196 final size:196
Alignment explanation
Indices: 17344562--17344955 Score: 447
Period size: 196 Copynumber: 2.0 Consensus size: 196
17344552 TCCGACTAGG
** *
17344562 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAATGAACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAACAACATGCAGGCGCTCAG
** * * * *
17344627 TCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCTTACGTGCTGTCAATCC
66 TCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTCTCAATCC
* * * * * * *
17344692 TGCTGCTGGTCCTTCTACCACAACCCTCGATCTAATCTGATCTTATACTGGGAATGAACTCTGTA
131 TGCTGCTGGTCCTACTACAACAACCCTCGACCTAATCCGATCTTAGACTAGGAATGAACTCCGTA
17344757 T
196 T
* * *
17344758 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCA-AC-AAAACAAGCATGCGGGTGCTT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CAGACGAAAACAA-CATGCAGGCGCTC
** * * * *
17344821 AG-CTGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCCTGCATGCTACT-
64 AGTC-GACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCC-CCTACATGCT-CTC
* * * *
17344884 GATCCTGCTGCTGGTCCTACTGCAACAACCCTTG-CCTAGTCCGATCTTAGACTAGGAATGAACT
126 AATCCTGCTGCTGGTCCTACTACAACAACCCTCGACCTAATCCGATCTTAGACTAGGAATGAACT
17344948 CCGTAT
191 CCGTAT
17344954 GC
1 GC
17344956 CTAAGCTAAC
Statistics
Matches: 164, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
195 6 0.04
196 119 0.73
197 38 0.23
198 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAAACAACATGCAGGCGCTCAG
TCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTCTCAATCC
TGCTGCTGGTCCTACTACAACAACCCTCGACCTAATCCGATCTTAGACTAGGAATGAACTCCGTA
T
Found at i:17345274 original size:159 final size:157
Alignment explanation
Indices: 17344929--17345429 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 157
17344919 CTAGTCCGAT
* * * * * **
17344929 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGTG--TGCGGGTGC-CC
1 CTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AG-GCATGCGGGCGCTTG
* ** * * *
17344991 AGCAGGCCGGAGAGGCAGAATGCGCAAGTCAGAGATCGGCCCGATCCCCCTACGTGCTGTCAATC
64 A-CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGCCAATC
* *
17345056 CTGCTGCAGCAACCCTCAGTCCGATCTGAT
128 CTGCTGCAGCAACCCTCAGTCCGAGCTGAG
* * * * *
17345086 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-TGAGCATGCGGGCGC-TGA
1 CTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAG-GCATGCGGGCGCTTG-
* * * * * *
17345149 ATCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCAGTGTGCTGCCAGT
64 ACCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT-A-CGTGCTGCCAAT
* * *
17345214 CCTGCTGCCA-CAACCCTCGGTCTG-GCTGGGG
127 CCTGCTG-CAGCAACCCTCAGTCCGAGCT-GAG
* *
17345245 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGTGCTTGG
1 CTTAGA-ATGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTTGA
* * * * * * ** * *
17345309 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCCTTCCTGTGTGCTGTCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCCTACGTGCTGCCAATCC
* * * ** *
17345374 TACTGCCGCAACCCTCAGTTC-AGTCCAAT
129 TGCTGCAGCAACCCTCAGTCCGAG-CTGAG
* *
17345403 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCCTATGC
17345430 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
155 2 0.01
157 90 0.33
158 53 0.19
159 118 0.43
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGGCGCTTGAC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGCCAATCCTG
CTGCAGCAACCCTCAGTCCGAGCTGAG
Found at i:17345432 original size:26 final size:26
Alignment explanation
Indices: 17345403--17345455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17345393 TCAGTCCAAT
17345403 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17345429 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17345455 C
1 C
17345456 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17346652 original size:26 final size:26
Alignment explanation
Indices: 17346623--17346675 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17346613 CCAGTCCGAT
17346623 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
* *
17346649 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
17346675 C
1 C
17346676 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:17347405 original size:159 final size:159
Alignment explanation
Indices: 17346816--17347406 Score: 540
Period size: 159 Copynumber: 3.7 Consensus size: 159
17346806 GCTTAGAAAT
* * * * ** *
17346816 GGAATGAAATCTGTATGCCTAAGCCAACCCACGAAATGAACGTACGGTTGCTCAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCAGCCGGAG
* * *
17346881 AGGCAAAATGCGCAAGCC-AGGGATCGGCCTGATTCCCCCTAT--GTGCTGTCGATCTTGCTGCC
66 AGGCATAATGCGCAAGCCGA-GGATCGGCCTGA-TCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* * *
17346943 ACAACCGTCGGTCCGGTCCGATCTTAGACTG
129 ACAACCCTCGGTCCGATTCGATCTTAGACTG
** * * * * * * *
17346974 GGAATGAACTCCGTATGCCTTTGTCAACCCACAAAATGAGCGTGCGGGTGCTAGGTCGGCCTGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCAGCCGGAG
*
17347039 AGGCATAATGCGCAAGCCTG-GGATCGG-CTCGATCCCCCTCTGTGTGCTG-CTGATCC--CATC
66 AGGCATAATGCGCAAGCC-GAGGATCGGCCT-GATCCCCCTCTGCGTGCTGTC-GATCCTGC-T-
* * * *
17347099 GCCACAACCCTCGGTCCAACTGGGTCTTAGACAT-
126 GCCACAACCCTCGGTCCGATTCGATCTTAGAC-TG
* * * * * * * *
17347133 GGAATGAACTCCCTACGCCTCAA-CCAACCCATGAAATGGGCGTGCGGGCACTCAGTC-GACTGG
1 GGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCAG-CCGG
* * * * * *
17347196 AGAGGTAGAATGCGTAAGCCGAAGATCGGCCTGGTCCACCCT-TACGTGCTGTCGATCCTGCTGC
64 AGAGGCATAATGCGCAAGCCGAGGATCGGCCTGATCC-CCCTCTGCGTGCTGTCGATCCTGCTGC
*
17347260 CGCAACCCTCGGTCCGATTCGATCTTAGACTG
128 CACAACCCTCGGTCCGATTCGATCTTAGACTG
* * * * *
17347292 GGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGCCAGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCAGCCGGAG
* * * *
17347357 AGGCATAATGCGTAAGCCGAGGATCGACCTGATCCCTCTCTGCATGCTGT
66 AGGCATAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGT
17347407 GGCTGCTGCC
Statistics
Matches: 341, Mismatches: 71, Indels: 41
0.75 0.16 0.09
Matches are distributed among these distances:
157 11 0.03
158 87 0.26
159 232 0.68
160 10 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGCCAGCCGGAG
AGGCATAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCGATTCGATCTTAGACTG
Found at i:17348783 original size:26 final size:26
Alignment explanation
Indices: 17348745--17348795 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17348735 GGCTCAAAAT
*
17348745 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
17348771 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
17348796 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:17349076 original size:185 final size:185
Alignment explanation
Indices: 17348743--17349085 Score: 411
Period size: 185 Copynumber: 1.9 Consensus size: 185
17348733 GTGGCTCAAA
* * *
17348743 ATCTTAGACTGGGAATGAACTCTGTATCCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTAGGAATGAACTCTGTATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * *
17348808 CCACGAAACGAGCGTGTGGGCACTTAACCTATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGC
66 CCACGAAACGAGCATGTGGACACTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGC
*
17348873 CCGGTCCCCCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCAGTCTG
131 CCGATCCCCCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCAGTCTG
* * *
17348928 ATCTTAAACTAGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 ATCTTAAACTAGGAATGAACTCTGTATCCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * ** * * * * *
17348992 CCCATGAAACGAGCAT-TCGGACGCTCAGTCGACCGGAGAGGCATAATGTGCAAGTCGGGGTTCA
65 CCCACGAAACGAGCATGT-GGACACTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCA
* * ***
17349056 GCTCGATCCTCTTTTGCGTGCTGTCGATCC
129 GCCCGATCCCCCCATGCGTGCTGTCGATCC
17349086 CGCTACTGGT
Statistics
Matches: 129, Mismatches: 27, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
184 2 0.02
185 127 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (185 bp):
ATCTTAAACTAGGAATGAACTCTGTATCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCATGTGGACACTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGC
CCGATCCCCCCATGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCAGTCTG
Found at i:17349447 original size:367 final size:356
Alignment explanation
Indices: 17348771--17349452 Score: 771
Period size: 367 Copynumber: 1.9 Consensus size: 356
17348761 ACTCTGTATC
* * *
17348771 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
* * * * * * * * *
17348836 CTATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCATGCGTGCTGTCGATCC
66 CGATCAGAAAGGCAAAATACGAAAGCCGAGGATCGACCCGATCCCCCCATGCGTGCTATCAATCC
17348901 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGG
131 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGG
* * * * * *
17348966 GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATTCGGACGCTCAGTCGACCGGAGA
196 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACCAGAGA
* * ** * ** *
17349031 GGCATAATGTGCAAGTCGGGGTTCAGCTCGATCCTCTTTTGCGTGCTGTCGATCCCGCTACTGGT
261 GGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCTCTCCTGCATGCTGTCGATCCCGCTACTGGT
17349096 CTTGCTACCATAACCCTCAGTCCGACTGGGG
326 CTTGCTACCATAACCCTCAGTCCGACTGGGG
* * * * *
17349127 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGACATAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
* *
17349192 CGGTCAGAAAGGCAAAATATGAAAGCCGAGGATCGACCCGATCCCCCC-TGCGTGCTATCAATCC
66 CGATCAGAAAGGCAAAATACGAAAGCCGAGGATCGACCCGATCCCCCCATGCGTGCTATCAA---
* * * * * *
17349256 TGCTGCTGGTCTTGCAGTCGCAACCCTCGGTTCGGTCTGATCTTAGAGTGGGAATGAACTCTGTA
128 T-C--CT-G-C-TGC---CGCAACCCTCGATCCAGTCTGATCTTAAACTAGGAATGAACTCTGTA
* * * *
17349321 TGCTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGG-GGCT
184 TGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGC-GGACGCT
* * *
17349384 CAGCC-AGTCAGAGAGGCAGAATGCGTAAGTCGGGGACCGGCCCGATCC-CTCCCTGCATGCTGT
247 CAGCCGA-CCAGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCTCT-CCTGCATGCTGT
17349447 CGATCC
310 CGATCC
17349453 TACTGCCGTA
Statistics
Matches: 264, Mismatches: 46, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
355 11 0.04
356 96 0.36
358 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
363 1 0.00
364 3 0.01
366 3 0.01
367 142 0.54
368 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (356 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
CGATCAGAAAGGCAAAATACGAAAGCCGAGGATCGACCCGATCCCCCCATGCGTGCTATCAATCC
TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGG
GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGACCAGAGA
GGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCTCTCCTGCATGCTGTCGATCCCGCTACTGGT
CTTGCTACCATAACCCTCAGTCCGACTGGGG
Found at i:17349625 original size:159 final size:159
Alignment explanation
Indices: 17349332--17349824 Score: 357
Period size: 159 Copynumber: 3.1 Consensus size: 159
17349322 GCTTAGACAT
* * * * *
17349332 GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGGGCTCAGCCAGTCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGGACTCAACCAGACAGAG
* * * * **
17349397 AGGCAGAATGCGTAAGTCGGGGACCGGCCCGATCCCTCCCTGCATGCTGTCGATCCTACTGCCGT
66 AGGCAGAATGCGTAAGCCAGGGACCGACCCGATCCCTCCCTGCATGCTGTCGATCCCACTGCCAC
17349462 AACCCTCGGTCCGGTCCAATCTTACACTG
131 AACCCTCGGTCCGGTCCAATCTTACACTG
* * * *
17349491 GGAATTAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GGGCACTGAACC-GACAGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGG-ACTCAACCAGACA-G
* * * * *
17349554 AGAGGCATAATGCGTAAGCCAGGGATCGACCCGGTCCC-CCTCTGCGTGCTGTC-AGTCCCGCTG
64 AGAGGCAGAATGCGTAAGCCAGGGACCGACCCGATCCCTCC-CTGCATGCTGTCGA-TCCCACTG
* * * **** *
17349617 CCACAACCCTCTGT-CTGACTGGGGCTTAGACAT-
127 CCACAACCCTCGGTCCGGTC-CAATCTTACAC-TG
* * * ***
17349650 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGAGCG-CTC-AGTTGACCA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTAC-AGGGACTCAACCAGA-CA
* * * * * * **
17349712 GAGAGGCAGAATGCATAAGCC-GAGGATCG-GCCTAGT-CC-CCCTGCGTGCTG-CTGGTCTTAC
63 GAGAGGCAGAATGCGTAAGCCAG-GGACCGACCCGA-TCCCTCCCTGCATGCTGTC-GATCCCAC
* * * * *
17349772 TACCGCAACCCTCGGTCCGATCCGATCTTAGACTG
125 TGCCACAACCCTCGGTCCGGTCCAATCTTACACTG
17349807 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
17349825 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 56, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
156 2 0.01
157 51 0.20
158 23 0.09
159 180 0.69
160 3 0.01
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGGACTCAACCAGACAGAG
AGGCAGAATGCGTAAGCCAGGGACCGACCCGATCCCTCCCTGCATGCTGTCGATCCCACTGCCAC
AACCCTCGGTCCGGTCCAATCTTACACTG
Found at i:17349827 original size:26 final size:25
Alignment explanation
Indices: 17349798--17349876 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
17349788 CCGATCCGAT
17349798 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
17349824 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCCGTATG
17349850 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
17349876 C
1 C
17349877 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:17350165 original size:12 final size:12
Alignment explanation
Indices: 17350150--17350181 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
17350140 CTACCGATCC
17350150 TGCTACTGGTCT
1 TGCTACTGGTCT
17350162 TGCTACTGGTCT
1 TGCTACTGGTCT
17350174 TGCTACTG
1 TGCTACTG
17350182 CAACCCTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.25, G:0.25, T:0.41
Consensus pattern (12 bp):
TGCTACTGGTCT
Found at i:17350530 original size:159 final size:159
Alignment explanation
Indices: 17350230--17350604 Score: 359
Period size: 159 Copynumber: 2.4 Consensus size: 159
17350220 CTCCGTTTGT
** * * * *
17350230 TTAGACATGGAATGAACTCTGTATGCTTAAGCCAACCCACGAACCAT--GCGTGCGGGTGCTCAG
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA--ATGAGCATGTGGGTGCTGAG
* ** * * * * *
17350293 TCGGCCGGAGAGCCAAAATGTGCAAGTCGGGGATCGGCTCGATCCCTGCCTACATGCTGTCGATC
64 CCAACTGGAGAGCCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCTCCCTACATGCTGTCGATC
* * * *
17350358 CTGCTACCGCAACCCTCAGTCTAGG-T-CGATC
129 CCGCCACCACAACCATCAGTC-AGGCTACGA-C
*
17350389 TTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGTGGGTGCTGAGC
* * *
17350453 CAACTGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCC-CCTCTACGA-GCTGTCGGT
65 CAACTGGAGAGCCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCTCC-CTAC-ATGCTGTCGAT
* ** * *
17350516 CCCGCCGCCACAACCATTGGTCCGGCTAGGAC
128 CCCGCCACCACAACCATCAGTCAGGCTACGAC
* * * *
17350548 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGT
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGTGGGT
17350605 ACTCAATTGA
Statistics
Matches: 176, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 4 0.02
159 166 0.94
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGTGGGTGCTGAGCC
AACTGGAGAGCCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCTCCCTACATGCTGTCGATCCC
GCCACCACAACCATCAGTCAGGCTACGAC
Found at i:17351011 original size:514 final size:514
Alignment explanation
Indices: 17349997--17351193 Score: 1267
Period size: 514 Copynumber: 2.3 Consensus size: 514
17349987 GGTCCTGCTG
* * * * * *
17349997 CCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCAC
1 CCACAACCATCGGTCCGGCTAGGACTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
* * *** * * * ** * *
17350062 GAAACGAG-CGTGCGGGCGCTCAACCGACTGGAGAGGTAGAATGCGTAAG-CTGAGGATCGGCTC
66 GAAACG-GTCGTGTGGGCACTCAACCGACCAAAAAAGCAGAATGCACAAGCCAG-GGATCGGCCC
* * ** * *
17350125 GGTCCCCCCTACGTGCTACCGATCCTGCTACTGGTCTTGCTACTGGTCTTGCTACTGCAACCCTC
129 GATCCCCCCTACATGCTGTCGATCCTACTGCTGGTC---CTA-----C-TGC--C-GCAACCCTC
* * * **
17350190 GATCCGATCCAATCTTAGACTGGGAATGAACTCCGTTTGTTTAGACATGGAATGAACTCTGTATG
182 GATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATG
* * * * *
17350255 CTTAAGCCAACCCACGAACCATGCGTGCGGGTGCTCAGTCGGCCGGAGAGCCAAAATGTGCAAGT
247 CCTAAGCCAACCAACGAAACAAGCGTGCGGGTGCTCAGTCGGCCGGAGAGCCAAAATGCGCAAGT
* * * * * * *
17350320 CGGGGATCGGCTCGATCCCTGCCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCTAGGTC
312 CAGGGACCGACCCGATCCCTCCCTACATGCTGTCAATCCTGCTACCACAACCCTCAGTCTAGGTC
* * * * * **
17350385 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTG
377 GATCTTAGACTAGGAATAAACTCCATATACCTAAGTCAACCCACAAAACGAGCATGCGGGCACTG
* **
17350450 AGCCAACTGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGAGCTGTCGG
442 AACCAACTAAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGAGCTGTCGG
* *
17350515 TCCCGCCG
507 CCCCGCCA
* * * * *
17350523 CCACAACCATTGGTCCGGCTAGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCATCGGTCCGGCTAGGACTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
* * ** **
17350588 GAAATGAG-CGTGTGGGTACTCAATTGACCAAAAAAGCAGAATGCGTAAGCCAGGGATCGGCCCG
66 GAAACG-GTCGTGTGGGCACTCAACCGACCAAAAAAGCAGAATGCACAAGCCAGGGATCGGCCCG
* * ***
17350652 ATCCCCTCCTGCATGCTGTCGATCTTACTGCTGGTCCTACTGCCGCAACCCTCGATCCGATGTGA
130 ATCCCC-CCTACATGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATCCGATCCAA
17350717 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACC
194 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACC
* * *
17350782 AATGAAACAAGCGTGCGGGTGCTCAGTCGGTCGGAGATG-CAGAATGCGCAAGAT-AGGGACCGA
259 AACGAAACAAGCGTGCGGGTGCTCAGTCGGCCGGAGA-GCCAAAATGCGCAAG-TCAGGGACCGA
* * * * *
17350845 CCCGGTCCC-CCCTGCATGCTGTCAATCCTGCTGCTACAACCCTCAGTC-CGGTCCGATCTTAGA
322 CCCGATCCCTCCCTACATGCTGTCAATCCTGCTACCACAACCCTCAGTCTAGGT-CGATCTTAGA
** * * * *
17350908 CTAGGAATAAACTCTGTATACCTTAGTTAACCCACAAAACGAGCGTGCGGGCACTGAACCGA-TC
386 CTAGGAATAAACTCCATATACCTAAGTCAACCCACAAAACGAGCATGCGGGCACTGAACCAACT-
* * * *
17350972 AAAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGGCCCCGCTA
450 AAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGAGCTGTCGGCCCCGCCA
* * *
17351037 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
1 CCACAACCATCGGTCCGGCTAGGACTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
* * ** * * * *
17351102 GAAACGGTCGTGTGGGCACTTAGCCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGGCTCGA
66 GAAACGGTCGTGTGGGCACTCAACCGACCAAAAAAGCAGAATGCACAAGCCAGGGATCGGCCCGA
*
17351167 TCCCCCCTACGTGCTGTCGATCCTACT
131 TCCCCCCTACATGCTGTCGATCCTACT
17351194 ACCGTAACCC
Statistics
Matches: 560, Mismatches: 104, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
513 24 0.04
514 259 0.46
515 133 0.24
516 3 0.01
518 3 0.01
519 1 0.00
524 3 0.01
526 110 0.20
527 24 0.04
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (514 bp):
CCACAACCATCGGTCCGGCTAGGACTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCAT
GAAACGGTCGTGTGGGCACTCAACCGACCAAAAAAGCAGAATGCACAAGCCAGGGATCGGCCCGA
TCCCCCCTACATGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATCCGATCCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCAA
CGAAACAAGCGTGCGGGTGCTCAGTCGGCCGGAGAGCCAAAATGCGCAAGTCAGGGACCGACCCG
ATCCCTCCCTACATGCTGTCAATCCTGCTACCACAACCCTCAGTCTAGGTCGATCTTAGACTAGG
AATAAACTCCATATACCTAAGTCAACCCACAAAACGAGCATGCGGGCACTGAACCAACTAAAGAG
GCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGAGCTGTCGGCCCCGCCA
Found at i:17351074 original size:159 final size:158
Alignment explanation
Indices: 17350902--17351239 Score: 367
Period size: 159 Copynumber: 2.1 Consensus size: 158
17350892 CCGGTCCGAT
** * ** *
17350902 CTTAGACTAGGAATAAACTCTGTATACCTTAGTTAACCCACAAAACGAG-CGTGCGGGCACTGAA
1 CTTAGACTAGGAATAAACTCCCTATACCTAAGCCAAACCACAAAACG-GTCGTGCGGGCACTGAA
* * * * *
17350966 CCGATCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGGCC
65 CCGACCAAAGAGGCAGAATGCACAAGTCAGGGATCGGCTCGATCCCCC-CTACGTGCTGTCGACC
*
17351031 CCGCTACCACAACCCTCGGTCCGGCTGGGG
129 CCACTACCACAACCCTCGGTCCGGCTGGGG
* ** * * *
17351061 CTTAGAC-ATGGAATGAACTCCCTATACCTAAGCCAAACCATGAAACGGTCGTGTGGGCACTTAG
1 CTTAGACTA-GGAATAAACTCCCTATACCTAAGCCAAACCACAAAACGGTCGTGCGGGCACTGAA
** *
17351125 CCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCC
65 CCGACCAAAGAGGCAGAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGACCC
* ** * **
17351190 TACTACCGTAACCCTCGGTCCGG-TCCGAT
130 CACTACCACAACCCTCGGTCCGGCT-GGGG
*
17351219 CTTAGACTAGGAATGAACTCC
1 CTTAGACTAGGAATAAACTCC
17351240 GTATGCTTAG
Statistics
Matches: 148, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 56 0.38
159 91 0.61
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATAAACTCCCTATACCTAAGCCAAACCACAAAACGGTCGTGCGGGCACTGAAC
CGACCAAAGAGGCAGAATGCACAAGTCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGACCCC
ACTACCACAACCCTCGGTCCGGCTGGGG
Found at i:17351248 original size:26 final size:26
Alignment explanation
Indices: 17351219--17351271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17351209 CCGGTCCGAT
* *
17351219 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATAAACTCCGTATG
*
17351245 CTTAGACCAGGGATAAACTCCGTATG
1 CTTAGACCAGGAATAAACTCCGTATG
17351271 C
1 C
17351272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATAAACTCCGTATG
Found at i:17351970 original size:26 final size:26
Alignment explanation
Indices: 17351931--17351983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17351921 GGCTCAAACT
17351931 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
17351957 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
17351983 C
1 C
17351984 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:17352362 original size:26 final size:26
Alignment explanation
Indices: 17352310--17352362 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17352300 CCGGTCTGAT
*
17352310 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
17352336 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
17352362 C
1 C
17352363 CTAACCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17353361 original size:26 final size:26
Alignment explanation
Indices: 17353332--17353384 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17353322 CCGATTCGAT
*
17353332 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
17353358 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
17353384 C
1 C
17353385 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:17354109 original size:26 final size:25
Alignment explanation
Indices: 17354066--17354117 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17354056 GGCTCAAACT
17354066 CTTAGACTGGAATAAACTCCGTATG
1 CTTAGACTGGAATAAACTCCGTATG
*
17354091 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATAAACTCCGTATG
17354117 C
1 C
17354118 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGTATG
Found at i:17354444 original size:26 final size:26
Alignment explanation
Indices: 17354408--17354460 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17354398 TCGATTTGAT
17354408 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17354434 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17354460 C
1 C
17354461 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17354647 original size:26 final size:26
Alignment explanation
Indices: 17354618--17354670 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17354608 GCGATCCGAT
*
17354618 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCCTATG
*
17354644 CTTAGACGTGGAATGAATTCCCTATG
1 CTTAGACGTGGAATGAACTCCCTATG
17354670 C
1 C
17354671 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCCTATG
Found at i:17354838 original size:26 final size:26
Alignment explanation
Indices: 17354802--17354854 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17354792 CCAGTTTGAT
17354802 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17354828 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17354854 C
1 C
17354855 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17354997 original size:394 final size:392
Alignment explanation
Indices: 17354249--17355220 Score: 1304
Period size: 394 Copynumber: 2.5 Consensus size: 392
17354239 TCCGGTTGGG
* * * *
17354249 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGACCGCTCAG
1 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGACCACTCAG
*
17354314 CCAGCCAAAGAGGCAGAATGCGCAAGCCGAATATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCAG-CAAAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
*
17354379 TGCTATCGCAACCCTCGATTCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
130 TGCTATCGCAACCCTCG-TCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
* * * *
17354444 GGATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCCTACAGGCGTTCAGCTGGTCGGAGA
194 GGATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCATACAGGCGCTCAACCGGTCGGAGA
* * *
17354509 GGCCAATCGAAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCAACGTGCCGTCAA
259 GGCCAATCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCAACGTACCATCAA
* * *
17354574 CCCTGCTGCTGGTCCTGCTGCCATAACCCTTGGTGCGATCCGATCTTAGACTGGGAATGAACTCC
324 CCCTGCTACTGGTCCTACTGCCATAACCCTCGGTGCGATCCGATCTTAGACTGGGAATGAACTCC
17354639 GTAT
389 GTAT
* * *
17354643 GCTTAGACGTGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGATCTCTCAG
1 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGACCACTCAG
* * *
17354708 CCAAGCAAAGAGGTAGAATACGCAAGCCGACGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CC-AGCAAAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCCCCCTGCGTGCTATCGATCC
* *
17354773 TGC-AGCCGTAACCCTCTGTCC-AGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
130 TGCTA-TCGCAACCCTC-GTCCGA-TTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * *
17354836 AGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTATGCAGGCGCTCAACCGGTCGGA
192 AGGGATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCATACAGGCGCTCAACCGGTCGGA
* * * * ** * *
17354901 GAGGCCGATCGAAGAGGTAGAATGCACAAGCTGGGGATCAATCCGGTCCCCCCTTATGTACTATC
257 GAGGCCAATCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCAACGTACCATC
* * * * * * *
17354966 GATCCTGCTACTGGTCTTACTGTCGTAACCCTCGGTTCGATCCGATCTTAGATTGGGAATGAACT
322 AACCCTGCTACTGGTCCTACTGCCATAACCCTCGGTGCGATCCGATCTTAGACTGGGAATGAACT
17355031 CCGTAT
387 CCGTAT
* ** **
17355037 GCTTAGACATGGAATGAACTT-CGTATGCCTAAGCCAACCCACG-AACGAACGTGCGGGCACTCA
1 GCTTAGACATGGAATGAA-TTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGACCACTCA
* ** ** * * * *
17355100 GCCGACCGGAGAGGCAGAATGCTTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
65 GCC-AGCAAAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCCCCCTGCGTGCTATCGATC
* * *
17355165 CTGCTATCGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
129 CTGCTATCGCAACCCTC-GTCCGATTTGATCTTAGACTAGGAATGAACTCCGTATG
17355221 ACTAAGTCAA
Statistics
Matches: 505, Mismatches: 66, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
393 116 0.23
394 384 0.76
395 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (392 bp):
GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGACCACTCAG
CCAGCAAAGAGGCAGAATGCGCAAGCCGAAGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCT
GCTATCGCAACCCTCGTCCGATTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGG
ATGAACTCCGTATGCCTAAATCAACCCATGAAACGAGCATACAGGCGCTCAACCGGTCGGAGAGG
CCAATCGAAGAGGTAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCAACGTACCATCAACC
CTGCTACTGGTCCTACTGCCATAACCCTCGGTGCGATCCGATCTTAGACTGGGAATGAACTCCGT
AT
Found at i:17356606 original size:12 final size:12
Alignment explanation
Indices: 17356589--17356621 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
17356579 ATTAGGCATA
17356589 AAGGGCCAATAT
1 AAGGGCCAATAT
17356601 AAGGGCCAATAT
1 AAGGGCCAATAT
17356613 AAGGGCCAA
1 AAGGGCCAA
17356622 GTACCAGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.12
Consensus pattern (12 bp):
AAGGGCCAATAT
Found at i:17357818 original size:26 final size:26
Alignment explanation
Indices: 17357767--17357819 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17357757 CCGATCTGAT
**
17357767 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATTGGGGATGAACTCCATATG
17357793 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGATTGGGGATGAACTCCATATG
17357819 C
1 C
17357820 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTCCATATG
Found at i:17358523 original size:26 final size:26
Alignment explanation
Indices: 17358485--17358537 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17358475 GGCTCAAAGT
** *
17358485 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
17358511 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
17358537 C
1 C
17358538 CAAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:17363815 original size:26 final size:26
Alignment explanation
Indices: 17363786--17363838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363776 CTGATTCGAT
*
17363786 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
* *
17363812 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
17363838 C
1 C
17363839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCGTATG
Found at i:17365016 original size:196 final size:193
Alignment explanation
Indices: 17364663--17365197 Score: 624
Period size: 196 Copynumber: 2.7 Consensus size: 193
17364653 TCTGGTTGGG
* * * * *
17364663 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCAAAAAATGAGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACT-CGTATGCCCAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAG
* ***
17364728 CCGATTGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCCCATGCGCATTGTCGATCC
65 TCGATTGGAGAGGCAGAATGCG-AAGCCGAGGATCAACCCGATCCCCC-TGCGTGCTGTCGATCC
* * * * * *
17364793 TACTGTTAGTCCTGCTACCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCAT
128 TGCTGCTGGTCCTACTACCGCAACCCTCGA-TCCGATCCAATCTTAGACTGGGAATGAACTCCAT
17364857 AT
192 AT
* * * *
17364859 GCTTAGACATGGAATAAACTCTGTATGCCCAAGCCAACCCATGAAACGAGAGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTC-GTATGCCCAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAG
** * *
17364924 TCGACCGGAGAGGCAGAATGCGTAAGCCGGGGACCAACCCGATCCACCCTGCGTGCTGTCGATCC
65 TCGATTGGAGAGGCAGAATGCG-AAGCCGAGGATCAACCCGATCC-CCCTGCGTGCTGTCGATCC
* * * * * **
17364989 TGCTGCTGGTCCTACTATCGTAACCCTCGATCTGATCTAATCTTAGACTGGGAGTGAACTCTGTA
128 TGCTGCTGGTCCTACTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATA
17365054 T
193 T
* *
17365055 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACT-CGTATGCCCAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAG
* * * * *
17365120 TCGATTGGAGACGTAGAACATGC-AAGTCGAGGATCAACCCGGTACCCCCTGCGTGCTGTCAATC
65 TCGATTGGAGAGGCAG-A-ATGCGAAGCCGAGGATCAACCCGAT-CCCCCTGCGTGCTGTCGATC
17365184 CTGCTGCTGGTCCT
127 CTGCTGCTGGTCCT
17365198 GCTGTCGATC
Statistics
Matches: 287, Mismatches: 45, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
195 1 0.00
196 274 0.95
197 8 0.03
198 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCGTATGCCCAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAGT
CGATTGGAGAGGCAGAATGCGAAGCCGAGGATCAACCCGATCCCCCTGCGTGCTGTCGATCCTGC
TGCTGGTCCTACTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:17365059 original size:26 final size:26
Alignment explanation
Indices: 17365030--17365082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17365020 CTGATCTAAT
* *
17365030 CTTAGAC-TGGGAGTGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17365056 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17365082 C
1 C
17365083 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17365200 original size:24 final size:24
Alignment explanation
Indices: 17365173--17365224 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
17365163 ACCCCCTGCG
*
17365173 TGCTGTCAATCCTGCTGCTGGTCC
1 TGCTGTCAATCCTACTGCTGGTCC
* *
17365197 TGCTGTCGATCTTACTGCTGGTCC
1 TGCTGTCAATCCTACTGCTGGTCC
17365221 TGCT
1 TGCT
17365225 ACCGTAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.31, G:0.25, T:0.37
Consensus pattern (24 bp):
TGCTGTCAATCCTACTGCTGGTCC
Found at i:17365419 original size:220 final size:220
Alignment explanation
Indices: 17364977--17365420 Score: 489
Period size: 219 Copynumber: 2.0 Consensus size: 220
17364967 CCACCCTGCG
* * *
17364977 TGCTGTCGATCCTGCTGCTGGTCCTACTATCGTAACCCTCGATCTGATCTAATCTTAGACTGGGA
1 TGCTGTCGATCCTACTGCTGGTCCTACTACCGTAACCCTCGATCAGATCTAATCTTAGACTGGGA
* ** * *
17365042 GTGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCG
66 ATGAACTCCATATGCTTAGAAATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCA
* * * * ** * * * * **
17365107 TGCGGGTGCTTAGTCGATTGGAGACGTAGAACATGCAAGTCGAGGATCAACCCGGTACCCCCTGC
131 TACGGGCGCTCAGACGACCGAAGACGCAGAACATGCAAGTCGAGGACCAACCCGATACCCCCAAC
*
17365172 GTGCTGTCAATCCTGCTGCTGGTCC
196 GTGCTATCAATCCTGCTGCTGGTCC
* * * * *
17365197 TGCTGTCGATCTTACTGCTGGTCCTGCTACCGTAACCCTCGGTCCAG-TTTGATCTTAGACT-GG
1 TGCTGTCGATCCTACTGCTGGTCCTACTACCGTAACCCTCGAT-CAGATCTAATCTTAGACTGGG
* *
17365260 AATGAACTCCATATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
65 AATGAACTCCATATGCTTAGAAATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGC
* * ** * ** *
17365325 ATACGGGCGCTCA-ACAGGCCGAAGAGGCAGAATGTGCAAGTCGGGGACCGGCCCGATCCCCCCC
130 ATACGGGCGCTCAGAC-GACCGAAGACGCAGAACATGCAAGTCGAGGACCAACCCGAT-ACCCCC
* * *
17365389 AATGTGCTATCGATCCTGCTGTTGGTCC
193 AACGTGCTATCAATCCTGCTGCTGGTCC
17365417 TGCT
1 TGCT
17365421 ACCACAACCC
Statistics
Matches: 182, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
218 1 0.01
219 98 0.54
220 81 0.45
221 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (220 bp):
TGCTGTCGATCCTACTGCTGGTCCTACTACCGTAACCCTCGATCAGATCTAATCTTAGACTGGGA
ATGAACTCCATATGCTTAGAAATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCA
TACGGGCGCTCAGACGACCGAAGACGCAGAACATGCAAGTCGAGGACCAACCCGATACCCCCAAC
GTGCTATCAATCCTGCTGCTGGTCC
Found at i:17365484 original size:26 final size:26
Alignment explanation
Indices: 17365446--17365498 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17365436 CTGGTCCAAT
17365446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17365472 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17365498 C
1 C
17365499 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17365634 original size:42 final size:42
Alignment explanation
Indices: 17365575--17365660 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
17365565 GGGATTGACC
*
17365575 CGATCCCCCTCTGTGTGCTGCAGGTCTCGCTGCCACAACCCT
1 CGATCCCCCTCTGTGTGCTGCAGGTCCCGCTGCCACAACCCT
17365617 CGATCCCCCTCTGTGTGCTGCAGGTCCCGCTGCCACAACCCT
1 CGATCCCCCTCTGTGTGCTGCAGGTCCCGCTGCCACAACCCT
17365659 CG
1 CG
17365661 GTCCGATTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.12, C:0.44, G:0.22, T:0.22
Consensus pattern (42 bp):
CGATCCCCCTCTGTGTGCTGCAGGTCCCGCTGCCACAACCCT
Found at i:17366559 original size:26 final size:26
Alignment explanation
Indices: 17366521--17366571 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366511 GGCTCAATCT
17366521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17366547 CTTAGACAT-GGAATGGACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
17366572 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17366749 original size:26 final size:26
Alignment explanation
Indices: 17366705--17366757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366695 TCGGTTTGAT
*
17366705 CTTAGACTTGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* * *
17366731 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17366757 C
1 C
17366758 CTAAGTCCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17367033 original size:171 final size:171
Alignment explanation
Indices: 17366856--17367184 Score: 446
Period size: 171 Copynumber: 1.9 Consensus size: 171
17366846 GCATGCTGCT
* * * * * * *
17366856 GATCCCGTTGTTGGTCCTGTTACGACAACCCTCG-GTCTGGTTGGGGCTTAGACTTGGAATGAAC
1 GATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATGAAC
* * * *
17366920 T-TCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCTGGCACTCAATTGATCGAAGAGGCAGAA
65 TCT-GTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAATCGATCGAAGAGGCAGAA
*
17366984 TGCGTAAGCCGGGGATCGACCAGATCCCCCTCTGTATGCTACC
129 TGCGCAAGCCGGGGATCGACCAGATCCCCCTCTGTATGCTACC
* *
17367027 GATCCCGCTGTCGGTCTTGCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACT
1 GATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACT
* * * *
17367092 CTGTATGCCTAAGCCAACCCACAAAATGAGCGTACAGGCGCTCAGTCGATCGGAGAGGCAGAATG
66 CTGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAATCGATCGAAGAGGCAGAATG
* *
17367157 TGCAAGCCGGGGATCGACCCGATCCCCC
131 CGCAAGCCGGGGATCGACCAGATCCCCC
17367185 CTTGCGTGCT
Statistics
Matches: 136, Mismatches: 20, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
171 133 0.98
172 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACT
CTGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAATCGATCGAAGAGGCAGAATG
CGCAAGCCGGGGATCGACCAGATCCCCCTCTGTATGCTACC
Found at i:17367728 original size:158 final size:160
Alignment explanation
Indices: 17367268--17367770 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 160
17367258 AACTTTGTAT
* **
17367268 GCTTAGCCATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCATTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAGAGCGTGCGGGCGCTCA
* * * ** *
17367332 GTC-GATCGGAGAGGCAGAATGCACAAGCCGAGGATTGGCCCGATCCCCCCCTGTGTGCTGTCGA
66 GTCGGCT-GGAGAGGCAGAATGCCCAAGCCGGGGATCAGCCCGAT-CCCCCCTGCGTGCTGTCGA
* *
17367396 TCCTGCT-ACTGCAACCCTCAGT-CGAGTTCAA
129 TCCTGCTGAC-GCAACCCTCGGTCCGAGCTCAA
* ** * *
17367427 TCTTAGACGGGGAATGAACTAC-GTATGCCTAAGTCAACCCAT-AAA-ATGAGCGTACGGGCGCT
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACA-GAGCGTGCGGGCGCT
* * * * * * *
17367489 GAGCCGACCGGAGAGGCATAATG-CGAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCG
64 CAGTCGGCTGGAGAGGCAGAATGCCCAAGCCGGGGATCAGCCCGATCCC-CCCTGCGTGCTGTCG
* * ** ***
17367553 ATCCCGCTGCCATAACCCTCGGTCCGA-CTGGG
128 ATCCTGCTGACGCAACCCTCGGTCCGAGCTCAA
*
17367585 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAGAGCGTGCGGGCGCTCA
* * ** * *
17367649 TTCGGCTGGAGAGGCAGATTGCCCAAGTTGGGGATCAGCTCGATCCCCCCTACGTGCTGTCGATC
66 GTCGGCTGGAGAGGCAGAATGCCCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
** * *
17367714 CTATTGTCGCAACCCTCGGTCCGATC-CAA
131 CTGCTGACGCAACCCTCGGTCCGAGCTCAA
* *
17367743 TCTTACAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
17367771 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 170 0.63
159 93 0.34
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAGAGCGTGCGGGCGCTCA
GTCGGCTGGAGAGGCAGAATGCCCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
CTGCTGACGCAACCCTCGGTCCGAGCTCAA
Found at i:17367979 original size:26 final size:26
Alignment explanation
Indices: 17367941--17367993 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17367931 CTGGTTCGAT
*
17367941 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
*
17367967 CTTAGACAT-GGAATGAAATCCCTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
17367993 C
1 C
17367994 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:17369154 original size:159 final size:159
Alignment explanation
Indices: 17368858--17369360 Score: 374
Period size: 159 Copynumber: 3.2 Consensus size: 159
17368848 GTGGCTCAAA
* * * *
17368858 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTACATTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
* * * *
17368923 GCCGACTGGAGACACAGAATGCTCAAGCCGGGGAACGGCCCGGTCCCCCCCTACGTGCTGTCGAT
66 GCCGACCGAAGACACAGAATGCTCAAGCCGAGGAACGACCCGGTCCCCCCCTACGTGCTGTCGAT
** *
17368988 CTTGCTACCGCAACCCTCGGTCTGATCTG
131 CCCGCTACCACAACCCTCGGTCTGATCTG
* ** * * *
17369017 ATCTTACATTGGGAATGAACTCTGTATGCATAAGTTAACCCAGGAAACGAGCATGCGAGTGCTGA
1 ATCTTACATTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
* ** * * ** * * *
17369082 GCCGGCCGAAGAGGCATAATGCGT-AAGCCGAGGATCGACCCGGTCCCCCTTTGCGTGGTGTCGG
66 GCCGACCGAAGACACAGAATGC-TCAAGCCGAGGAACGACCCGGTCCCCCCCTACGTGCTGTCGA
*
17369146 TCCCGCTACCACAACCCTCGGTCTG-GCTGG
130 TCCCGCTACCACAACCCTCGGTCTGATCT-G
** * * * * * *
17369176 GGCTTCGACA-T-GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCTTGCG-GGGCT
1 ATCTT--ACATTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGAGCGCT
* * * ** * * * * * * * * *
17369238 CAACCGACTGGAGAGGCAAAATACGCAAGCCGGGGATCGACCTGGT-CCCTCCTGCGTGCTATCG
64 CAGCCGACCGAAGACACAGAATGCTCAAGCCGAGGAACGACCCGGTCCCCCCCTACGTGCTGTCG
* * * * * *
17369302 ATCCTGCTATCGCAACCCTCAGTCCGGT-TCG
129 ATCCCGCTACCACAACCCTCGGTCTGATCT-G
* * *
17369333 ATCTTAGACTGGGAATAAACT-CGTATGC
1 ATCTTACATTGGGAATGAACTCCGTATGC
17369361 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 68, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
155 2 0.01
156 7 0.03
157 47 0.18
158 41 0.15
159 166 0.62
160 2 0.01
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
ATCTTACATTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
GCCGACCGAAGACACAGAATGCTCAAGCCGAGGAACGACCCGGTCCCCCCCTACGTGCTGTCGAT
CCCGCTACCACAACCCTCGGTCTGATCTG
Found at i:17369385 original size:26 final size:25
Alignment explanation
Indices: 17369335--17369386 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
17369325 CCGGTTCGAT
*
17369335 CTTAGACTGGGAATAAACTCGTATG
1 CTTAGACTGGGAATAAACTCATATG
* *
17369360 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACT-CATATG
17369386 C
1 C
17369387 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATAAACTCATATG
Found at i:17369729 original size:26 final size:26
Alignment explanation
Indices: 17369700--17369752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17369690 CTGGTCTAAT
*
17369700 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17369726 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17369752 C
1 C
17369753 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17370230 original size:26 final size:26
Alignment explanation
Indices: 17370201--17370253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17370191 CCGATTCGAT
17370201 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
17370227 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17370253 C
1 C
17370254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17370933 original size:26 final size:26
Alignment explanation
Indices: 17370897--17370949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17370887 CCGGTCTGAC
17370897 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17370923 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17370949 C
1 C
17370950 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17371216 original size:195 final size:197
Alignment explanation
Indices: 17370851--17371249 Score: 509
Period size: 195 Copynumber: 2.0 Consensus size: 197
17370841 ACGCTCCGAT
* * ** *
17370851 GATCCTGCTGCTGGTCTCGCTACCGCAATCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACT
1 GATCCTGCTGCTGGTCCCGCTACCGCAACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACC
* * * * * *
17370916 CCATATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGT
66 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC
* * * * * *
17370981 GCTCAGCCAGTCGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCAATCCAC-CCCTGC-TGCT
131 GCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCAATCC-CTCCCTGCGTGCT
17371044 ATC
195 ATC
* * *
17371047 GATCCTGCTGCTGGTCCCGCTACTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACC
1 GATCCTGCTGCTGGTCCCGCTACCGCAACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACC
* *
17371112 CCATATGCTTA-ACAT-GGAATGAACTCCGTGTGCCTAAGCCAACCCACAGAACGAGCGTGCGGG
66 CCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG
* * **
17371175 CGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCTGGGGATCAGCCCGGTCCCTCCCTGCGTGCT
130 CGCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCAATCCCTCCCTGCGTGCT
*
17371240 GTC
195 ATC
17371243 GATCCTG
1 GATCCTG
17371250 TTGCCGTAAC
Statistics
Matches: 173, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
194 1 0.01
195 90 0.52
196 82 0.47
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (197 bp):
GATCCTGCTGCTGGTCCCGCTACCGCAACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACC
CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC
GCTCAGCCAGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCAATCCCTCCCTGCGTGCTA
TC
Found at i:17371527 original size:159 final size:159
Alignment explanation
Indices: 17371118--17371527 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 159
17371108 AACCCCATAT
* * *
17371118 GCTTA-ACATGGAATGAACTCCGTGTGCCTAAGCCAACCCACAGAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACA-AACGAGCGTGCGGGCACTCAG
* * * *
17371182 CCGGCCGAAGAGGCAGAATGCATAAG-CTGGGGATCAGCCCGGTCCCTCCCTGCGTGCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGCATAAGTCTGGGGATCAGCCCGATCCCTCCATGCATGCTGTCGAT
* * ** ** *
17371246 CCTGTTGCCGTAACCCTGAGTTTGATTCGA
130 CCCGCTGCCACAACCCTGAGTCCGACTCGA
* * * *
17371276 TCATAGAC-TAGGAATGAACTTCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAC-AAACGAGCGTGCGGGCACTCA
* * * ** * *
17371340 GTCGGTCGGAGAGGCATAATGCGCAAGTC-GGGTATC-GACCTGATCCC-CCTATGCATGCTGTC
64 GCCGGCCGGAGAGGCAGAATGCATAAGTCTGGGGATCAG-CCCGATCCCTCC-ATGCATGCTGTC
* *
17371402 GATCCCGCTGCCACAACCCTCG-GTCCGACTGGG
127 GATCCCGCTGCCACAACCCT-GAGTCCGACTCGA
* * *
17371435 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC-AAACGAGCGTGCGGGCACTCAG
*
17371500 CCGGCCGGAGAGGTAGAATGCATAAGTC
65 CCGGCCGGAGAGGCAGAATGCATAAGTC
17371528 AACCCAGGAA
Statistics
Matches: 203, Mismatches: 41, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
158 7 0.03
159 192 0.95
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCATAAGTCTGGGGATCAGCCCGATCCCTCCATGCATGCTGTCGATC
CCGCTGCCACAACCCTGAGTCCGACTCGA
Found at i:17371570 original size:58 final size:58
Alignment explanation
Indices: 17371459--17371587 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 58
17371449 TGAACTCCCT
* * * * *
17371459 ATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGA
1 ATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGAAGAGGTAGA
* * * * * * *
17371517 ATGCATAAGTCAACCCAGGAAATGAGTGTGCGGGCACTGAACCGACTGAAGAGGCATA
1 ATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGAAGAGGTAGA
*
17371575 ATGCGTAAGCCAA
1 ATGCATAAGCCAA
17371588 GGATCCTTGT
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.31, T:0.13
Consensus pattern (58 bp):
ATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGACCGAAGAGGTAGA
Found at i:17372592 original size:26 final size:26
Alignment explanation
Indices: 17372563--17372615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17372553 CCGGTTTGAT
17372563 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17372589 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17372615 C
1 C
17372616 CAAGGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17372713 original size:184 final size:188
Alignment explanation
Indices: 17372404--17372847 Score: 497
Period size: 184 Copynumber: 2.3 Consensus size: 188
17372394 TCTGGCTGGG
* * * *
17372404 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGC-CAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
17372469 CCGACCGGAGAGGTAGAATACGCAAACCAGGGATCGGCCTGATCCCCCCTGCATGCTGTCGA-T-
65 CCGACCAGAAAGGCAGAATACGCAAACCAGGGATCGGCCCGATCCCCCCTGCATGCTGTCGACTG
** *
17372532 C-C-TACTAC-CACAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCCGTAT
130 CGCGTACTACTCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAT
* * *
17372588 GCTTAGAC-TGGGGATGAACTCCGTATGCCAAGGCCAACCCACGAAACGAGCGTGTGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCAA-GCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
17372652 TCCGATCAGAAAGGCAGAATGCGTAAGCCAGGGATCGGCCCGA-CTCGCCCTGCATGCTGTCGAT
64 GCCGACCAGAAAGGCAGAATACGCAAACCAGGGATCGGCCCGATC-CCCCCTGCATGCTGTCGA-
** * *
17372716 CCTGCTGCTGGTACTACTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCA
127 -CTGC-GC--GTACTAC--TCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCA
17372781 TAT
186 TAT
* *
17372784 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCC-AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
17372848 ATTGGCCGGA
Statistics
Matches: 214, Mismatches: 29, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
183 4 0.02
184 103 0.48
187 1 0.00
188 1 0.00
190 1 0.00
193 6 0.03
196 95 0.44
197 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (188 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAAAGGCAGAATACGCAAACCAGGGATCGGCCCGATCCCCCCTGCATGCTGTCGACTGC
GCGTACTACTCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:17372797 original size:26 final size:26
Alignment explanation
Indices: 17372759--17372811 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17372749 CTGGTCCGAT
17372759 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17372785 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17372811 C
1 C
17372812 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17373290 original size:26 final size:26
Alignment explanation
Indices: 17373260--17373312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17373250 CCGGTCTGAT
17373260 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17373286 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17373312 C
1 C
17373313 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17374033 original size:26 final size:26
Alignment explanation
Indices: 17373982--17374034 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17373972 GGCTCAAACT
*
17373982 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17374008 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17374034 C
1 C
17374035 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17374353 original size:26 final size:26
Alignment explanation
Indices: 17374324--17374376 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17374314 CTGGTCTGAT
* *
17374324 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* *
17374350 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
17374376 C
1 C
17374377 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:17374573 original size:26 final size:26
Alignment explanation
Indices: 17374534--17374589 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17374524 CCGGTTTGAT
*
17374534 CTTAGACTGTGAATGAACTCTATATG
1 CTTAGACTGTGAATGAACTCCATATG
*
17374560 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCATATG
17374586 CTTA
1 CTTA
17374590 AGCTAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCATATG
Found at i:17375064 original size:26 final size:26
Alignment explanation
Indices: 17375035--17375087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17375025 CCGATTCGAT
17375035 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
17375061 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17375087 C
1 C
17375088 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17375737 original size:196 final size:195
Alignment explanation
Indices: 17375371--17375754 Score: 440
Period size: 196 Copynumber: 2.0 Consensus size: 195
17375361 GTGTCGCTGA
* *
17375371 TCCTGCTGTCGCAACACTCGATCCAGTCCGATTATAGACTGGGAATGAACTCTGTATGCTTAGTC
1 TCCTGCTGCCGCAACACTCGATCCAGTCCGATTATAGACTGGGAATGAACTCTGTATGCTTAGAC
*
17375436 TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGATCGA
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGATCGA
* *
17375501 AGAGGCAGAATGCACGAATCGGGTATCGACCTGGTCCCCCCTA-CGTGCTATCGATCCTACTATT
131 AGAGGCAGAATG-ACGAATCGGGGACCGACCTGGTCCCCCC-AGCGTGCTATCGATCCTACTATT
17375565 GG
194 GG
* * * *
17375567 TCCTGCTGCCGCAACCCTCGATCCGGTCTGATCT-TAGGCTGGGAATGAACTGC-GTATGCTTAG
1 TCCTGCTGCCGCAACACTCGATCCAGTCCGAT-TATAGACTGGGAATGAACT-CTGTATGCTTAG
* * * * *** * *
17375630 ACAT-GGAATGAAGTCCTTATGCCTAAGGCAACCCATGAAATGAGCGTGCGGGTGTTC-AGTCGG
64 AC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACT-GA
* * * *
17375693 TCGGAGAGGCAGAATG-CGTAAGTCGGGGACCAGTCC-GTTCCCCCCAGCGTGCTGTCGATCCT
127 TCGAAGAGGCAGAATGACG-AA-TCGGGGACC-GACCTGGTCCCCCCAGCGTGCTATCGATCCT
17375755 GCTGCCGTAA
Statistics
Matches: 158, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
194 2 0.01
195 5 0.03
196 145 0.92
197 6 0.04
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
TCCTGCTGCCGCAACACTCGATCCAGTCCGATTATAGACTGGGAATGAACTCTGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGATCGA
AGAGGCAGAATGACGAATCGGGGACCGACCTGGTCCCCCCAGCGTGCTATCGATCCTACTATTGG
Found at i:17376177 original size:26 final size:26
Alignment explanation
Indices: 17376112--17376178 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
17376102 TAGACATGGA
* * *
17376112 ATGAACTCCGTATACTTAGATTGGGT
1 ATGAACTCTGTATGCTTAGACTGGGT
*
17376138 ATGAACTCTATATGCTTAGACTGGGT
1 ATGAACTCTGTATGCTTAGACTGGGT
*
17376164 ATGAACTTTGTATGC
1 ATGAACTCTGTATGC
17376179 CTAAGTCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (26 bp):
ATGAACTCTGTATGCTTAGACTGGGT
Found at i:17377959 original size:26 final size:26
Alignment explanation
Indices: 17377930--17377982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17377920 CTGGTCCAAT
17377930 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17377956 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17377982 C
1 C
17377983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17378610 original size:26 final size:26
Alignment explanation
Indices: 17378581--17378632 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17378571 TGATCCGATA
*
17378581 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACACCGTATGC
* * *
17378607 TTAGACTGGGGATGAACACTGTATGC
1 TTAGACTGAGAATGAACACCGTATGC
17378633 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACACCGTATGC
Found at i:17378802 original size:209 final size:209
Alignment explanation
Indices: 17378396--17378869 Score: 585
Period size: 209 Copynumber: 2.3 Consensus size: 209
17378386 TCTGACTGGG
* * * * * * *
17378396 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTCTGCGTG--CTT
1 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGC--ATGCGAGCACTT
* * *
17378459 AGCCAACTGAAAAGGCTGACCAGAGAGGTAGAATGCGCAAGTTAGGGATCAGCCCAATCCCCCCT
64 AGCCAACCGAAAAGGCCGACCAGAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCAATCCCCCCT
* * ** *
17378524 TCGTGCTGCCGATCCTGCTGCTGGTTCTACTATCGCAACCCTCGGTCTGATCCGATATTAGACTG
129 TCGTGCTGCCGATCCTGCTACTGGTTCTACTATCGCAACCCTCGATCCAATCCAATATTAGACTG
17378589 AGAATGAACTCCGTAT
194 AGAATGAACTCCGTAT
* * *
17378605 GCTTAGAC-TGGGGATGAACACTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCACTTA
1 GCTTAGACAT-GGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTTA
* * * **
17378669 GCCAACCGAAAAGGCCGACCAGAGAGGCAGAATGTGCAAGTTAGGGATCATCTCGGTCCCCCCTT
65 GCCAACCGAAAAGGCCGACCAGAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCAATCCCCCCTT
* * * * * * * *
17378734 CGTGCTGTCGATCCTGTTACTGGTTCTGCTGTCGTAACCCTCGATCCAATCTAATCTTAGATTGA
130 CGTGCTGCCGATCCTGCTACTGGTTCTACTATCGCAACCCTCGATCCAATCCAATATTAGACTGA
*
17378799 GAATGAATTCCGTAT
195 GAATGAACTCCGTAT
* * *
17378814 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCG
1 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCATGCG
17378870 GGTGTTCAGC
Statistics
Matches: 223, Mismatches: 38, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
207 5 0.02
208 1 0.00
209 216 0.97
210 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (209 bp):
GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCACTTAG
CCAACCGAAAAGGCCGACCAGAGAGGCAGAATGCGCAAGTTAGGGATCAGCCCAATCCCCCCTTC
GTGCTGCCGATCCTGCTACTGGTTCTACTATCGCAACCCTCGATCCAATCCAATATTAGACTGAG
AATGAACTCCGTAT
Found at i:17379158 original size:159 final size:156
Alignment explanation
Indices: 17378814--17379311 Score: 454
Period size: 159 Copynumber: 3.2 Consensus size: 156
17378804 AATTCCGTAT
* *
17378814 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CTATGAAACGAGCGTGCGGGTGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAC-ATGAAACGAGCGTGCGGGCGCTCA
* * * *
17378878 GCCGATCGGAGAGGTAGAATGCAGAAGCCGGGGATCGACCCGATCCCCTGCGTGCTATCGATCCT
65 GCCGACCGAAGAGGCAGAATGCAGAAGCCAGGGATCGACCCGATCCCCTGCGTGCTATCGATCCT
** * *
17378943 GCTGTCACAACCCTCAGTCTGATCCGA
130 GCTACCACAACCCTCAGTCGGATCAGA
* * ** * *
17378970 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAGTGAGCGTACGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTCA
* *
17379034 GCCGACCGAAGAGGCATAATGC-GCAAGCCAGGGATC-AGCCCGATCCCCCTCTGCGTGCTGTCG
65 GCCGACCGAAGAGGCAGAATGCAG-AAGCCAGGGATCGA-CCCGAT--CCC-CTGCGTGCTATCG
* * *
17379097 GTCCTGCTACCACAACCCTCAGTCGG-GCTAGG
125 ATCCTGCTACCACAACCCTCAGTCGGATC-AGA
* * * * *
17379129 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCACATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
17379194 TCGACCGAAGAGGTAGAATAC-GTAAGTCAGGAATCGTCCCGGTCTCCCCTTCATGCTATCGATC
66 CCGACCGAAGAGGCAGAATGCAG-AAGCCAGGGATCGACCC-G-ATCCCCTGCGTGCTATCGATC
* ** *
17379258 TTGCTACCGTAACCCTCAGTTCGG-TCTGA
128 CTGCTACCACAACCCTCAG-TCGGATCAGA
* *
17379287 TCTTAGAC-TAGGAATGAACTTCGTA
1 GCTTAGACAT-GGAATGAACTCCGTA
17379312 CGATTAGACT
Statistics
Matches: 274, Mismatches: 54, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
155 3 0.01
156 87 0.32
157 2 0.01
158 53 0.19
159 126 0.46
160 2 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCAGAAGCCAGGGATCGACCCGATCCCCTGCGTGCTATCGATCCTG
CTACCACAACCCTCAGTCGGATCAGA
Found at i:17380384 original size:26 final size:26
Alignment explanation
Indices: 17380343--17380392 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17380333 CCAGTCTGAT
*
17380343 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
17380369 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
17380393 TGCCTAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:17381543 original size:26 final size:26
Alignment explanation
Indices: 17381505--17381557 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17381495 GGCTCAAAAT
17381505 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17381531 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17381557 C
1 C
17381558 CTAAGTTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17382034 original size:26 final size:26
Alignment explanation
Indices: 17382005--17382057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17381995 CCGGTTCGAT
*
17382005 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17382031 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17382057 C
1 C
17382058 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17382973 original size:26 final size:25
Alignment explanation
Indices: 17382944--17383000 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
17382934 GACGACCCAT
** *
17382944 TTTTTATTTTTCATGATTTTTGAAA
1 TTTTTATGGTTCAGGATTTTTGAAA
* *
17382969 CTTTTTGTGGTTCAGGATTTTTTAAA
1 -TTTTTATGGTTCAGGATTTTTGAAA
17382995 TTTTTA
1 TTTTTA
17383001 GAAAGAGTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.21, C:0.05, G:0.12, T:0.61
Consensus pattern (25 bp):
TTTTTATGGTTCAGGATTTTTGAAA
Found at i:17383449 original size:26 final size:26
Alignment explanation
Indices: 17383411--17383463 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17383401 GGCTCAAAAT
17383411 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17383437 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17383463 C
1 C
17383464 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17384673 original size:26 final size:26
Alignment explanation
Indices: 17384635--17384687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17384625 GGCTCAAAAT
17384635 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17384661 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17384687 C
1 C
17384688 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17385760 original size:159 final size:158
Alignment explanation
Indices: 17385501--17385855 Score: 451
Period size: 159 Copynumber: 2.2 Consensus size: 158
17385491 TCTTAGACTG
* * * * * * *
17385501 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGACCAGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCACTCAGCCGACCAGAG
* * * * *
17385566 AGGCATAATGCGCAAGCTAGGGATCAACCCGATCCCCCTTTATGTGCTGTCGGTCCCGT-TGCCA
66 AGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTTTACGTGCTGCCGGT-CCGTCTACCA
17385630 CAACCCTCAGTCCGACTGGGGCTTACACAC
130 CAACCCTCAGTCCGACTGGGGCTTACA-AC
* * *
17385660 GGAATTAACTCCCTATGCCTAAGCCAGCCCAAGAAACGAGCGTACGAGCACTCAGCCGGCCAGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCACTCAGCCGACCAGAG
* * * *
17385725 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCTTTTGCGTGCTGCCGGTCCTTCTACCAC
66 AGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTTTACGTGCTGCCGGTCCGTCTACCAC
** * *
17385790 AACCCTTGGTCCGACTGGGGCTTAGAAT
131 AACCCTCAGTCCGACTGGGGCTTACAAC
* * *
17385818 GGAATGAACTCCCTATGCCTATGCCAACTCACGAAACG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACG
17385856 GGTGTACGGG
Statistics
Matches: 167, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 37 0.22
159 130 0.78
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCACTCAGCCGACCAGAG
AGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTTTACGTGCTGCCGGTCCGTCTACCAC
AACCCTCAGTCCGACTGGGGCTTACAAC
Found at i:17386007 original size:26 final size:26
Alignment explanation
Indices: 17385966--17386018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17385956 CCAATCTGAT
*
17385966 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17385992 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17386018 C
1 C
17386019 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17386708 original size:26 final size:26
Alignment explanation
Indices: 17386679--17386729 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386669 GGTCAGATCC
* *
17386679 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
*
17386705 TAGACTGGGGATAAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
17386730 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:17388322 original size:158 final size:158
Alignment explanation
Indices: 17388029--17388327 Score: 357
Period size: 158 Copynumber: 1.9 Consensus size: 158
17388019 TGTCGATCCC
** *
17388029 GCTGCTGGTCTTGCTGCGACAACCCTCGATCCGACTGGGCCTTAGACATGGAATGAACACCGTAT
1 GCTGCTGGTCCCGCTGCCACAACCCTCGATCCGACTGGGCCTTAGACATGGAATGAACACCGTAT
* * * * *
17388094 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAACCGACCGAAGAGGCATAATGCACAAG
66 GCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGAAGAGGCAGAATACACAAG
17388159 CCGAGGATCGGCCCGATTCCCTCTGTGT
131 CCGAGGATCGGCCCGATTCCCTCTGTGT
* ** ** * *
17388187 GCTGCTGGTCCCGTTGCCACAACCCTCGATCCGGTTGGGGTTTAGACATGGAATGAACTCCTTAT
1 GCTGCTGGTCCCGCTGCCACAACCCTCGATCCGACTGGGCCTTAGACATGGAATGAACACCGTAT
* * * ** ** * *
17388252 GCAC-AAGCCAACCCACGAAATGGGCATGCGGGCTCTCAGTCGGTCGGAGAGGCAGAATACGCAA
66 GC-CTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGAAGAGGCAGAATACACAA
*
17388316 GTCGAGGATCGG
130 GCCGAGGATCGG
17388328 TTGGGTCCCC
Statistics
Matches: 115, Mismatches: 25, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
158 114 0.99
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTGCTGGTCCCGCTGCCACAACCCTCGATCCGACTGGGCCTTAGACATGGAATGAACACCGTAT
GCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGAAGAGGCAGAATACACAAG
CCGAGGATCGGCCCGATTCCCTCTGTGT
Found at i:17388414 original size:26 final size:26
Alignment explanation
Indices: 17388385--17388437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17388375 CCGGTCGGAT
*
17388385 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17388411 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17388437 C
1 C
17388438 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17388504 original size:513 final size:513
Alignment explanation
Indices: 17387527--17388508 Score: 1248
Period size: 511 Copynumber: 1.9 Consensus size: 513
17387517 CTGTTGATCC
* *
17387527 TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
1 TGCTGCCACAACCCTCGATCCGATCTGACCTTAGACTGGGAATGAACACCGTATGCATAAGTCAA
* * *
17387592 CCCACAGAATGAGCGTGCGGGCACTAAGCCGATCGAAGAGGCATAATGCACAAGCCGGGGATCGG
66 CCCACAGAACGAGCGTGCGGGCACTAAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGG
* * * *
17387657 CCTAAGCTCCCACTGCATGCTGTCGGTCCTGCTCGCACAACTCCTCGGTCTGACTGGGGCTTAGA
131 CCCAAGCTCCCACTGCATGCTGTCGGTCCCGCTCGCACAACTCCTCGATCCGACTGGGGCTTAGA
** **
17387722 CATGGAATGAACTCCCTATGCCTAAGCCAATTCGTGAAATGGGCATGCGGGCGCTCAGTCGATCG
196 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGTCGATCG
* * * *
17387787 GAGAGCCAGAATGCACAAGCCGAGGATCGGCCCAGTCCCTCATATGTGCTATCGATCCTGCTGCC
261 GAGAGCCAGAATACACAAGCCGAGGATCGGCCCAGTCCCCCATACGTGCTACCGATCCTGCTGCC
* *
17387852 GTAACCCTCGGTCTGGTCTGATTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
326 GTAACCCTCGGTCCGGTCGGATTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* ** * ** *
17387917 TTTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGCGTTCAGCCGATCGGAAAGGCATAATG
391 TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGCACTCAACCGATCCAAAAGGCATAATA
17387982 CACAAGCCGGGGATCAGCTTGGTCCCTCTTTATGTGCTGTCGATCCCGCTGCTGGTCT
456 CACAAGCCGGGGATCAGCTTGGTCCCTCTTTATGTGCTGTCGATCCCGCTGCTGGTCT
* * *
17388040 TGCTGCGACAACCCTCGATCCGA-CTGGGCCTTAGACAT-GGAATGAACACCGTATGCCTAAGTC
1 TGCTGCCACAACCCTCGATCCGATCT-GACCTTAGAC-TGGGAATGAACACCGTATGCATAAGTC
*
17388103 AACCCAC-GAAACGAGCGTGCGGGCGCTGAA-CCGACCGAAGAGGCATAATGCACAAGCCGAGGA
64 AACCCACAG-AACGAGCGTGCGGGCACT-AAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGA
* * * ** * **
17388166 TCGGCCCGA-TTCCCTCTGTGTGCTG-CTGGTCCCG-TTGCCACAAC-CCTCGATCCGGTTGGGG
127 TCGGCCCAAGCTCCCACTGCATGCTGTC-GGTCCCGCTCG-CACAACTCCTCGATCCGACTGGGG
* * *
17388227 TTTAGACATGGAATGAACTCCTTATGCAC-AAGCCAACCCACGAAATGGGCATGCGGGCTCTCAG
190 CTTAGACATGGAATGAACTCCCTATGC-CTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
* * * * **** *
17388291 TCGGTCGGAGAGGCAGAATACGCAAGTCGAGGATCGGTTGGGTCCCCCTTACGTGCTACCGATCC
254 TCGATCGGAGAGCCAGAATACACAAGCCGAGGATCGGCCCAGTCCCCCATACGTGCTACCGATCC
* * *
17388356 TGCTGCCGTAACCCTTGGTCCGGTCGGATCTTAGACTGTGAATGAACTCCGTATGCTTAGACTGG
319 TGCTGCCGTAACCCTCGGTCCGGTCGGAT-TTAGACTGGGAATGAACTCCATATGCTTAGACTGG
** * **
17388421 GGATGAACTCTGTATGCCTAAGTCAATGCATGAAATGAGTTTACGGGCACTCAACCGA-CCAAAG
383 GGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GGCACTCAACCGATCCAAA-
**
17388485 AGGCA-AGATACGTAAGCCGGGGAT
446 AGGCATA-ATACACAAGCCGGGGAT
17388509 TGAACGGGTG
Statistics
Matches: 398, Mismatches: 60, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
511 149 0.37
512 103 0.26
513 143 0.36
514 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (513 bp):
TGCTGCCACAACCCTCGATCCGATCTGACCTTAGACTGGGAATGAACACCGTATGCATAAGTCAA
CCCACAGAACGAGCGTGCGGGCACTAAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGG
CCCAAGCTCCCACTGCATGCTGTCGGTCCCGCTCGCACAACTCCTCGATCCGACTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGTCGATCG
GAGAGCCAGAATACACAAGCCGAGGATCGGCCCAGTCCCCCATACGTGCTACCGATCCTGCTGCC
GTAACCCTCGGTCCGGTCGGATTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGCACTCAACCGATCCAAAAGGCATAATA
CACAAGCCGGGGATCAGCTTGGTCCCTCTTTATGTGCTGTCGATCCCGCTGCTGGTCT
Found at i:17389644 original size:26 final size:26
Alignment explanation
Indices: 17389608--17389660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17389598 CCAGTTTGAT
17389608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17389634 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17389660 C
1 C
17389661 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17389927 original size:171 final size:171
Alignment explanation
Indices: 17389634--17389941 Score: 411
Period size: 171 Copynumber: 1.8 Consensus size: 171
17389624 ACTCCGTATG
* *
17389634 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCTCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * **
17389699 CGACCAGAGAGGCATAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCCACGTGCTGTCGATCC
17389764 CGCTGCCGGTCCTGCTGCCACAACCCTCAATCCGGTTGGGC
131 CGCTGCCGGTCCTGCTGCCACAACCCTCAATCCGGTTGGGC
* * * * * * *
17389805 CTTAGACT-TGGATTGAACTCTGTATGCCTATGCCAACCCATGAAATGAGTGTGTGGGCGCTGAG
1 CTTAGACTGGGGA-TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * *
17389869 CCGGTCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCCACGTGCTGTCGGTC
65 CCGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCCACGTGCTGTCGATC
17389934 CCGCTGCC
130 CCGCTGCC
17389942 ACAACCCTCA
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
170 3 0.03
171 112 0.97
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (171 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCAGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCCACGTGCTGTCGATCC
CGCTGCCGGTCCTGCTGCCACAACCCTCAATCCGGTTGGGC
Found at i:17390061 original size:159 final size:159
Alignment explanation
Indices: 17389765--17390062 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 159
17389755 TGTCGATCCC
* * * *
17389765 GCTGCCGGTCCTGCTGCCACAACCCTCAATCCGGTTGGGCCTTAGACTTGGATTGAACTCTGTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGCTGGGCCTTAGACATGGAATGAACTCTGTAT
* ** * * * * * *
17389830 GCCTATGCCAACCCATGAAATGAGTGTGTGGGCGCTGAGCCGGTCGGAGAGGCATAATGCACAAG
66 GCCCAACCCAACCCATAAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAG
17389895 CCAGGGATCGGCCCGATCCCCCTCCACGT
131 CCAGGGATCGGCCCGATCCCCCTCCACGT
* * * **
17389924 GCTGTCGGTCCCGCTGCCACAACCCTCAGTCTGGCTGGGGTTTAGACATGGAATGAACTCCT-TA
1 GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGCTGGGCCTTAGACATGGAATGAACT-CTGTA
* **
17389988 TGCCCAACCCAACCCATAAAACGAGCGTGTGGGCGCTCAGCCGATCGGGGAGGCAGAATGCGTAA
65 TGCCCAACCCAACCCATAAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAA
*
17390053 GCCGGGGATC
130 GCCAGGGATC
17390063 AACCGGGTCC
Statistics
Matches: 116, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
159 114 0.98
160 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCAATCCGGCTGGGCCTTAGACATGGAATGAACTCTGTAT
GCCCAACCCAACCCATAAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAG
CCAGGGATCGGCCCGATCCCCCTCCACGT
Found at i:17390151 original size:26 final size:26
Alignment explanation
Indices: 17390122--17390172 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17390112 CTGGTCTGAT
*
17390122 CTTAGATTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
*
17390148 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
17390173 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:17390883 original size:26 final size:26
Alignment explanation
Indices: 17390846--17390896 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17390836 GCTTAAAATC
17390846 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* *
17390872 TTAGACAT-GGAATGACCTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
17390897 CCTAAGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:17391060 original size:26 final size:26
Alignment explanation
Indices: 17391029--17391081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17391019 CCGGTTTGAT
*
17391029 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17391055 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17391081 C
1 C
17391082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17391718 original size:907 final size:890
Alignment explanation
Indices: 17390117--17392725 Score: 3473
Period size: 907 Copynumber: 2.9 Consensus size: 890
17390107 TCGGTCTGGT
*
17390117 CTGATCTTAGATTGGGAATGAACTCTGTATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
1 CTGATCTTAGATTGGGAATGAACTC-GTAT-CTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
** * * * * *
17390182 AATGCACGAAACGAGTGTACGGGCGCTCAGTCGACTAGAGAGGC-GAAATGCGTAAGCCGGGGAT
64 AACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAG-GATGCGCAAGCCGGGGAT
* * * *
17390246 CGAACGGGTAGTAGGTGGGTTCAAGCACATCTTCATATTTCTATTGTACGAATGCCATTTTTATG
128 CGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATG
17390311 GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTT
193 GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTT
* ** *
17390376 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTT-AATTTTTTTTCAGAAAG
258 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT-AGAAAG
* * *
17390440 AGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGT-ATTTTTGTTCACATGCTCAAACAATTTC
322 AGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTAATTTTT-TTCGCATGCACAAA-AAATTC
*
17390504 AGCTAAAAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTAGACAC
385 AGCTAAAAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTCGACAC
*
17390569 TTTAATTGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
450 TTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
17390634 AGGTTTGATGA-GGAATAGGGGTCCAATATAAGAGCCAAGTGCCAGCACCTATCGCACATCATGT
515 AGGTTTGATGAGGGAA-AGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
17390698 GCGCACACCCCTACGGCCCCCCAATCTCCGGATCCCCCAATGTCGTCGATTAGGCTCTTCGGCGC
578 GCGCACACCCC-CCGGCCCCCCAATCT-CGGAACCCCCAATGCCGTAG-TTAGGCTCTTCGGCGA
* **
17390763 TGCT-TCGACGATGGTGCCGT-GGGTGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
640 TGATCT-GACGATGGTGCC-TCGGGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
17390826 ATGCATCGTGGCTTAAAATCTTAGACTGGGAATGAACTCCATATGGTTAGACATGGAATGACCTC
703 GTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC
* * * * * *
17390891 CGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGTGCTTAGCTGCCCGGAGAG-GTAGAATG
768 CGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGCCCGGAG-GCGCAGAATG
* * * ** * *
17390955 CGCAAGCCGACGATCGGCCCGATCC-CCCCTGTTTGCTGTCGATCCTACTATCACAACCCTCACT
832 CACAAGCAGACGATCGACCCGATCCACCCCTGCATGCTGTCAATCCTAC--T----ACCCTAAC-
17391019 C
890 C
17391020 CGGTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
1 C----TGATCTTAGATTGGGAATGAACT-CGTAT-CTTAGACTGGGGATGAACTCCGTATGCCTA
* * ** * *
17391085 AGTCAACCCAGGAAACAAACGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCCCAAACCGGG
60 AGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGG
* * *
17391150 GATCGAACGGGTGGTTGGTGGATTCAAGCACATCTACATATTTCTACTGTGCCAATGCCATTTTT
125 GATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTT
17391215 ATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCC
190 ATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCC
* * *
17391280 ATTTTCTTTTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTAGAA
255 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAA
* *
17391345 AGAGTTTTGTCCCCAAATTTGGTAGAGGTGGT-CTCTGTAATTTTTTTGGCATGCACAAAAACAT
320 AGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCT-TGTAATTTTTTTCGCATGCACAAAAA-AT
* *
17391409 TCAGCTTAAAACTCGAATTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTCGAC
383 TCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTCGAC
17391474 ACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
448 ACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
17391539 CGAGGTTTGATGAGGGAGAAGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATG
513 CGAGGTTTGATGAGGGA-AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
17391604 TGCGCACACCCCCCGGCCCCCATAATCATCGGAACCCCTAATGCCGCTAGTTAGGCTGTCCGGCG
577 TGCGCACACCCCCCGGCCCCC-CAATC-TCGGAACCCCCAATGCCG-TAGTTAGGCTCTTCGGCG
* * * * *
17391669 ATGATCTGACAATGGTGCCTCGGGCAAAAAAAATGTGGCACCAGCACATGTCTGAGCCCAGCATG
639 ATGATCTGACGATGGTGCCTCGGGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* *
17391734 TGCACCGTGGCTCAAAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCT
704 TGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
* * **
17391799 GTATGCCTAAGCCAACCCGTGAAATGAGTGTGCGGGCGCTCAGCCGGTCGGAGGCGCAGAATGCA
769 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGCCCGGAGGCGCAGAATGCA
** * * * **
17391864 CAAGCAGGGGATCGACTCGGTCCACCCCTGCATGCTGTCAATCCTGCTACTGTAACC
834 CAAGCAGACGATCGACCCGATCCACCCCTGCATGCTGTCAATCCTACTACCCTAACC
* *
17391921 C-G--C--AG-TTTGG--T---CT-G-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 CTGATCTTAGATTGGGAATGAACTCGTATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * **
17391973 CCCACAAAATGAGTGTGTGGGCACTCAACCGACCAGAGAGGCAGGATGCGCAAGCCGAAGATCGA
66 CCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
* ** * *
17392038 ACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGTCTTTTTTATGGCT
131 ACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCT
17392103 TGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTC
196 TGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTC
* * *
17392168 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATGTTTTTAGCAAGGGTT
261 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTT
* * *
17392233 TTGTCCCCAATTTTGGTAGAGGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAACTA
326 TTGTCCCCAAATTTGGTAGAGGTGATCCTTGTAATTTTTTTCGCATGCAC-AAAAAATTCAGCTA
*
17392298 AAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTA
390 AAAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTC-GACACTTTA
*
17392362 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
454 ATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
17392427 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
519 TTGATGAGGGA-AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
17392492 CACCCCCCCCGGCCCCCCAATCGTCGAAACCCCCAATGCTGTCGGCTAGGCTCTTTGGCGATGCT
583 CA--CCCCCCGGCCCCCCAATC-TCGGAACCCCCAATGCCGT-AGTTAGGCTCTTCGGCGATG-A
* * * * * *
17392557 TCCGACGATGGTGCCCCGGGAAAAAAAAATACGGCACCAGCACATTCTCGAGCCCAACATGTGCA
643 TCTGACGATGGTGCCTCGGGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * * *
17392622 CCGTGCCTGAAAATATTAGACTGGGAATGAACTCTGTGTGCTTAGACATGGAATGAACTACGTAT
708 CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTAT
** *
17392687 GCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
773 GCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
17392726 TCGATCGGGG
Statistics
Matches: 1513, Mismatches: 167, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
881 4 0.00
882 503 0.33
883 43 0.03
884 159 0.11
886 2 0.00
889 1 0.00
891 4 0.00
892 2 0.00
894 1 0.00
896 1 0.00
901 2 0.00
902 5 0.00
903 1 0.00
906 15 0.01
907 721 0.48
908 48 0.03
909 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (890 bp):
CTGATCTTAGATTGGGAATGAACTCGTATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
ACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTT
TTGTCCCCAAATTTGGTAGAGGTGATCCTTGTAATTTTTTTCGCATGCACAAAAAATTCAGCTAA
AAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTTCGACACTTTAAT
TGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGAAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCAATCTCGGAACCCCCAATGCCGTAGTTAGGCTCTTCGGCGATGATCTGACGA
TGGTGCCTCGGGAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCT
CAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGCCCGGAGGCGCAGAATGCACAAGCAGACGAT
CGACCCGATCCACCCCTGCATGCTGTCAATCCTACTACCCTAACC
Found at i:17391792 original size:26 final size:26
Alignment explanation
Indices: 17391752--17391804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17391742 GGCTCAAAAT
17391752 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17391778 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
17391804 C
1 C
17391805 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17393189 original size:26 final size:26
Alignment explanation
Indices: 17393138--17393190 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
17393128 CCAACCCGAT
*
17393138 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
17393164 CTTAGACTGGTG-ATGAA-TTCCATATG
1 CTTAGACTGG-GAATGAACTT-CATATG
17393190 C
1 C
17393191 CTAAGTCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:17394061 original size:26 final size:26
Alignment explanation
Indices: 17394020--17394072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17394010 CCGATCCGAT
*
17394020 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17394046 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17394072 C
1 C
17394073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17394490 original size:159 final size:159
Alignment explanation
Indices: 17394201--17394491 Score: 393
Period size: 159 Copynumber: 1.8 Consensus size: 159
17394191 TACTAGTCTT
* * * * *
17394201 GCTGCCATAACCCTCGGTTCGGCTGTGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * * * *
17394266 CCATGAAATGAGCATGCGGGCGCTCAACCGGCCGGAGAGGTAGAATTCGCAAGCCTGGGATCGAC
66 CCACAAAACGAGCATGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
17394331 CCCGTCCCTCTCTGCGTGCTACCAGTCCC
131 CCCGTCCCTCTCTGCGTGCTACCAGTCCC
*
17394360 GCTGCCACAACCCTTGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *** * *
17394425 CCACAAAACGGGCGTGCGGGAGCTCAGTTGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
66 CCACAAAACGAGCATGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
17394490 CC
131 CC
17394492 AGACCCCCTT
Statistics
Matches: 111, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
159 111 1.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTGCCACAACCCTCGGTCCAGCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGAGCATGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
CCCGTCCCTCTCTGCGTGCTACCAGTCCC
Found at i:17394575 original size:26 final size:26
Alignment explanation
Indices: 17394546--17394598 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17394536 CCGGTTTGAT
17394546 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGCG-ATGAACTCCGTATG
17394572 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGGCGATGAACTCCGTATG
17394598 C
1 C
17394599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCGTATG
Found at i:17395305 original size:26 final size:26
Alignment explanation
Indices: 17395267--17395319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395257 GGCTCAAAAT
17395267 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17395293 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17395319 C
1 C
17395320 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17395803 original size:26 final size:26
Alignment explanation
Indices: 17395767--17395819 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395757 TTGGTCTGAT
*
17395767 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
17395793 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17395819 C
1 C
17395820 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17396450 original size:155 final size:151
Alignment explanation
Indices: 17395977--17396472 Score: 377
Period size: 155 Copynumber: 3.2 Consensus size: 151
17395967 TCGACTGGGG
* * * * * * * * *
17395977 CTTAGACAT-GGAATAAACTCTTATGCCTAAGGCAACCCATGAAATGAGCGTGTGGGCGATCATC
1 CTTAGAC-TGGGAATGAACTCCTATGCCTAAGCCAACCCAGGACA-G-GCGTGCGGGTGCTCAGC
** *
17396041 CGGCCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCGGATCCCCCCTGCATGCTGTCGATCCT
63 CGGCCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCGG-T-CCCCCTGCATGCT-ACGATCCT
* * * * *
17396106 GCTACCGCAACCCTCGGTCCAATTCGAT
125 GCTGCCGAAACCCTC-GTTCAGTCCGAT
* * * * *
17396134 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCT-CTGAG
1 CTTAGACTGGGAATGAACTC-CTATGCCTAAGCCAACCCA-G-GACAGGCGTGCGGG-TGCTCAG
* ** * * * * * *
17396198 TCGGTTGGAGTGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTACGGTCCC
62 CCGGCCGGAGAGGCAGAATGTGTAAGCCGGGGATCGA-CCGGTCCCC-CTGCATGCTACGATCCT
** * * * * * **
17396263 ATTGCCAAAACCCTCGGTCCGACTGGGG
125 GCTGCCGAAACCCTCGTTCAGTC-CGAT
17396291 CTTAGACAT-GGAATGAACTCCTATGCCTAAGCCAACCCACGGACAGGCGTGCGGGTGCTCAGCC
1 CTTAGAC-TGGGAATGAACTCCTATGCCTAAGCCAACCCA-GGACAGGCGTGCGGGTGCTCAGCC
* * *
17396355 GACCAGAGAGGTAGAATGTGTAAGCCGGGGATCGACCTGGTCCCCCTGCATGCTACCGATCCTGC
64 GGCCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACC-GGTCCCCCTGCATGCTA-CGATCCTGC
* * *
17396420 TGCTGTAACCCTCGATTCGGTCCGAT
127 TGCCGAAACCCTCG-TTCAGTCCGAT
17396446 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCC-TATGC
17396473 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 67, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
154 13 0.05
155 87 0.34
156 30 0.12
157 55 0.21
158 66 0.26
159 4 0.02
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (151 bp):
CTTAGACTGGGAATGAACTCCTATGCCTAAGCCAACCCAGGACAGGCGTGCGGGTGCTCAGCCGG
CCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCGGTCCCCCTGCATGCTACGATCCTGCTGCC
GAAACCCTCGTTCAGTCCGAT
Found at i:17396497 original size:26 final size:26
Alignment explanation
Indices: 17396446--17396498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17396436 TCGGTCCGAT
*
17396446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17396472 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
17396498 C
1 C
17396499 CTAAGTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17396589 original size:12 final size:12
Alignment explanation
Indices: 17396572--17396596 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17396562 CCCCTACACG
17396572 TGCTGCCGATCC
1 TGCTGCCGATCC
17396584 TGCTGCCGATCC
1 TGCTGCCGATCC
17396596 T
1 T
17396597 ACTACCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.24, T:0.28
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:17396907 original size:158 final size:158
Alignment explanation
Indices: 17396620--17396917 Score: 409
Period size: 158 Copynumber: 1.9 Consensus size: 158
17396610 TTGGTCCGAT
* * **
17396620 TGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTATGGGCAC
1 TGGGGCATAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCAC
* ** * * * * *
17396685 TCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCTTTCGGCGTGCTGTCG
66 TCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCGGCATGCTGTCG
*
17396750 ATCCTGCTACCGCAACCCTCAGTTCAGC
131 ATACTGCTACCGCAACCCTCAGTTCAGC
* **
17396778 TGGGGCATAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCA
1 TGGGGCATAGACA-AGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCA
* * *
17396842 CTCAGTCGACCAAAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCTCCTGCATGTTGTC
65 CTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCGGCATGCTGTC
17396907 GATACTGCTAC
130 GATACTGCTAC
17396918 TTGTCCTACT
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
158 119 0.99
159 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
TGGGGCATAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCAC
TCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCGGCATGCTGTCG
ATACTGCTACCGCAACCCTCAGTTCAGC
Found at i:17396991 original size:26 final size:26
Alignment explanation
Indices: 17396953--17397005 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17396943 CCGGTCCGAT
17396953 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17396979 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
17397005 C
1 C
17397006 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17397269 original size:158 final size:158
Alignment explanation
Indices: 17396981--17397271 Score: 370
Period size: 158 Copynumber: 1.8 Consensus size: 158
17396971 TCTGTATGCT
** * * **
17396981 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGAGCATGCGAGTGCTCAGTCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGTCG
* * *** * *
17397046 ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGCTCGATCCTTTCGGCGTGCTGTCGATCCTGC
66 ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCTGCTCGATCCCCCCGGCGTGCTATCGATACTGC
17397111 TGCCGCAACCCTCGGTTCAGCTGGGGCA
131 TGCCGCAACCCTCGGTTCAGCTGGGGCA
* ** *
17397139 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCACTCAGTCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGTCG
* * *
17397204 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATC-GAC-CTGATCCCCCCTGCGTGTTATCGATACT
66 ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCTG-CTC-GATCCCCCCGGCGTGCTATCGATACT
17397267 GCTGC
129 GCTGC
17397272 TGGTCCTACT
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 2 0.02
158 109 0.98
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCACTCAGTCG
ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCTGCTCGATCCCCCCGGCGTGCTATCGATACTGC
TGCCGCAACCCTCGGTTCAGCTGGGGCA
Found at i:17397280 original size:354 final size:352
Alignment explanation
Indices: 17396624--17397608 Score: 1278
Period size: 354 Copynumber: 2.8 Consensus size: 352
17396614 TCCGATTGGG
* * * *
17396624 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTATG-GGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGC--ATGCGGCACTCA
* *
17396688 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCTTTCGGCGTGCTGTCGATC
64 GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCTCGATCCTTTCGGCGTGCTGTCGATC
* *
17396753 CTGCTACCGCAACCCTCAGTTCAGCTGGGGCATAGACATAGAATGAACTCCCTATGCCTAAGCCA
128 CTGCTACCGCAACCCTCGGTTCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCA
* *
17396818 ACCCACGAAATGAGCGTACAGGCACTCAGTCGACCAAAGAGGCAGAATGCGTAAGCCGGGGATCG
193 ACCCACGAAATGAGTGTACAGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * * *
17396883 ACCCGGTCCCTCCTGCATGTTGTCGATACTGCTACTTGTCCTACTACCGCAACCCTCGATCCGGT
258 ACCTGGTCCCCCCTGCGTGTTATCGATACTGCTACTGGTCCTACTACCGCAACCCTCGATCCGGT
*
17396948 CCGATCTTAGACTGGGAATGAACTCTGTAT
323 CCGATCTTAGACTGGGAATGAACTCCGTAT
* **
17396978 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACGCACGAAACGAGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCATGCG-GCACTCAG
*
17397043 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGCTCGATCCTTTCGGCGTGCTGTCGATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCTCGATCCTTTCGGCGTGCTGTCGATCC
*
17397108 TGCTGCCGCAACCCTCGGTTCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 TGCTACCGCAACCCTCGGTTCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
17397173 CCCACGAAATGAGTGTACGGGCACTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
194 CCCACGAAATGAGTGTACAGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * *
17397238 CCTGATCCCCCCTGCGTGTTATCGATACTGCTGCTGGTCCTACTACCGTAACCCTCGGTCCGGTC
259 CCTGGTCCCCCCTGCGTGTTATCGATACTGCTACTGGTCCTACTACCGCAACCCTCGATCCGGTC
*
17397303 TGATCTTAGACTGGGAATGAACTCCGTAT
324 CGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17397332 GCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACGCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCATGC-GGCACTCAG
* * * * * * * * *
17397397 CCGACCGGAGAAGCAAAATGCGTAAGCCAGGGATCGACCCGATCC-TCCATGCATGCTGTCGATC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CTCGATCCTTTC-GGCGTGCTGTCGATC
* * * *** * ** * *
17397461 CTGCTACCGCAACCCTTGG-TCTGATCCAGCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGTC
128 CTGCTACCGCAACCCTCGGTTCAGCTGGGGCATAGACAT-GGAATGAACTCCCTATGCCTAAGCC
* * * * * * * * *
17397524 AACCCACAAAACGAGTGTGCAGGCACTGAG-CCAACAAAGAGGCATAATGCGCAAGTCGAGGATC
192 AACCCACGAAATGAGTGTACAGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATC
*
17397588 GACCTGGTCCCCTTCTGCGTG
257 GACCTGGTCCCC-CCTGCGTG
17397609 CTGCTGGTCT
Statistics
Matches: 551, Mismatches: 73, Indels: 15
0.86 0.11 0.02
Matches are distributed among these distances:
352 42 0.08
353 68 0.12
354 440 0.80
355 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (352 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCATGCGGCACTCAGT
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCTCGATCCTTTCGGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTTCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGAGTGTACAGGCACTCAGTCGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
TGGTCCCCCCTGCGTGTTATCGATACTGCTACTGGTCCTACTACCGCAACCCTCGATCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTAT
Found at i:17397336 original size:26 final size:26
Alignment explanation
Indices: 17397307--17397359 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17397297 CCGGTCTGAT
17397307 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17397333 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17397359 C
1 C
17397360 CTGAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17397782 original size:158 final size:154
Alignment explanation
Indices: 17397332--17397832 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 154
17397322 AACTCCGTAT
* * * *
17397332 GCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACGCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
17397397 CC-GACCGGAGAAGCAAA-ATGCGTAAGCCAGGGATCGACCCGATCCTCC-ATGCATGCTGTCGA
65 CCAG-CCGGAGAGGCAAATATGC--AAGCC-GGGATCGACCCGGTCC-CCTCTGCGTGCTGCCGA
*
17397459 TCCTGCTACCGCAACCCTTGGTCTGATCCA
125 TCCTGCTACCGCAACCCTTGGTCCGATCCA
* * * * * * *
17397489 GCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACAAAACGAGTGTGCAGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** ** * * * *
17397554 CCA-ACAAAGAGGCATAATGCGCAAGTCGAGGATCGACCTGGTCCCCTTCTGCGTGCTGCTGGT-
65 CCAGCCGGAGAGGCA-AATATGCAAGCCG-GGATCGACCCGGTCCCC-TCTGCGTGCTGCCGATC
* * **
17397617 CTCGCTACCACAACCCTCGGTCCGATTGA
127 CT-GCTACCGCAACCCTTGGTCCGATCCA
* * * *
17397646 GGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 -GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
17397711 GCCAGCCGGAGAGGCAGAATATGCAAGCCGGTGATCGACCCGGTCCCCTCTGTGTGCTACCGATC
64 GCCAGCCGGAGAGGCA-AATATGCAAGCCGG-GATCGACCCGGTCCCCTCTGCGTGCTGCCGATC
*
17397776 CTGCTACCGCAACCCTTGGTCC-ATTTCGA
127 CTGCTACCGCAACCCTTGGTCCGA--TCCA
* *
17397805 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
17397833 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 59, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
155 3 0.01
156 27 0.10
157 89 0.33
158 111 0.41
159 39 0.14
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (154 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGCAAATATGCAAGCCGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGATCCTGC
TACCGCAACCCTTGGTCCGATCCA
Found at i:17397847 original size:26 final size:26
Alignment explanation
Indices: 17397806--17397856 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17397796 CCATTTCGAT
* *
17397806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17397832 CTTAGACTAGGCATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17397857 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17398564 original size:26 final size:26
Alignment explanation
Indices: 17398526--17398578 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398516 GGCTCAAAAT
*
17398526 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17398552 CTTAGAC-ACGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17398578 C
1 C
17398579 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17399055 original size:26 final size:26
Alignment explanation
Indices: 17399026--17399078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17399016 CCGGTCCGAT
17399026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17399052 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17399078 C
1 C
17399079 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17400300 original size:26 final size:26
Alignment explanation
Indices: 17400262--17400314 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17400252 GGCTCAAAAT
17400262 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17400288 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17400314 C
1 C
17400315 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17400714 original size:159 final size:158
Alignment explanation
Indices: 17400287--17400717 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
17400277 AACTCCATAT
* * *
17400287 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTTGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * **
17400352 TCGATCGGAGAGGCAGAATGCGCAAGCCGTGGATCAGCCCAGT-CCCCCTACATGCTGTCAATCC
66 TCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTACCAATCC
* *** * * *
17400416 TACTGCTGTAACCCTCAGTCTGATCTGA
131 CACTGCCACAAACCTCAGTCCGAGCTGA
* ** * *
17400444 TCTTAGAC-TGGGAATGAACTCCGTAT-GCATTGGTCAACCCATGAAACGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGGC-TAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
* * ** * * ** * * **
17400507 AGCCAACCGAAGAGGCATTATGCACAAGCCAGGGATCAGGTCGATCCCCCTCTTCATGCTACCGG
64 AGTCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTACATGCTACCAA
* *
17400572 TCCCACTGCCACAAACCTCGGTCCG-GCTGGG
128 TCCCACTGCCACAAACCTCAGTCCGAGCT-GA
* * * *
17400603 GCTTAGACATGGAATAAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
17400668 TTGACCGAAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCT
66 TCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCT
17400718 GCGTGTTACC
Statistics
Matches: 212, Mismatches: 55, Indels: 13
0.76 0.20 0.05
Matches are distributed among these distances:
156 2 0.01
157 83 0.39
158 8 0.04
159 116 0.55
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
TCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACATGCTACCAATCC
CACTGCCACAAACCTCAGTCCGAGCTGA
Found at i:17400792 original size:26 final size:26
Alignment explanation
Indices: 17400756--17400814 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
17400746 CTCGGTCTGG
* *
17400756 TTCG-ATG-TTAGACTGGGAATGAAC
1 TTCGTATGCTTAGACTGGGAATAAAA
*
17400780 TTCGTATGCTTAGACTGGGGATAAAA
1 TTCGTATGCTTAGACTGGGAATAAAA
17400806 TTCGTATGC
1 TTCGTATGC
17400815 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (26 bp):
TTCGTATGCTTAGACTGGGAATAAAA
Done.