Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 121 of 138
Found at i:17401714 original size:26 final size:26
Alignment explanation
Indices: 17401685--17401737 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17401675 CCGATCTGAT
*
17401685 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17401711 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17401737 C
1 C
17401738 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17402217 original size:26 final size:26
Alignment explanation
Indices: 17402188--17402240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17402178 CCGATCTGAT
*
17402188 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
17402214 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
17402240 C
1 C
17402241 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17403120 original size:26 final size:26
Alignment explanation
Indices: 17403091--17403143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403081 CTGATCCGAT
17403091 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
17403117 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
17403143 C
1 C
17403144 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:17403879 original size:159 final size:158
Alignment explanation
Indices: 17403459--17403870 Score: 472
Period size: 159 Copynumber: 2.6 Consensus size: 158
17403449 AACTCCGTAT
*
17403459 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGTGCGGGCGC
1 GCTTAG-AATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG---G-GCGTGCGGGCGC
* ** * * * * *
17403524 TCAACCGACCAGAGAGGCAGAATGCACAAGCCGAGGA-CTGGCCCGTTCCCCCCTGCGTGCTATG
61 TCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTAGCCCGATCCCCCCTACGTGCTATG
** * *
17403588 GATCCCGCTACTGCAACCCTCGGTCCGGTCTGA
126 GATCCCGCTACCACAACCCTCGATCCGGACTGA
* * * * * * *
17403621 TCTTGGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTAAG
1 GCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
17403686 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATC-AGCCCGATCCCCCTCTACGTGCTATTGG-
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTAGCCCGATCCCCC-CTACGTGCTA-TGGA
* *
17403749 TCCCGCTGCCACAACCCTCGATCC-GACTGGG
128 TCCCGCTACCACAACCCTCGATCCGGACT-GA
* * *
17403780 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCGCTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
*
17403845 TCGGTCGGAGAGGCAGAATGCGCAAG
65 CCGGTCGGAGAGGCAGAATGCGCAAG
17403871 TTGGGGATCG
Statistics
Matches: 211, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
158 56 0.27
159 109 0.52
160 4 0.02
161 2 0.01
162 40 0.19
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCTAGCCCGATCCCCCCTACGTGCTATGGATCC
CGCTACCACAACCCTCGATCCGGACTGA
Found at i:17403990 original size:26 final size:26
Alignment explanation
Indices: 17403939--17403991 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17403929 CCAGTCTGAT
**
17403939 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
17403965 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
17403991 C
1 C
17403992 CTATGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:17405048 original size:159 final size:158
Alignment explanation
Indices: 17404547--17405048 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
17404537 ACTCCATATG
* * *
17404547 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
* * ** * * *
17404612 CGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGGTCCGAT-CCCCCCTACATGCTATCGATAC
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGAT-C
* * * * * *
17404676 TGCTACCGCAACACTCGGTCTAGTCCAAT
130 TGCTGCCACAACCCTCGGTCCAATCCGAT
*** * * * ** * * * *
17404705 CTTAGATTGGGAATGAACTCCGTATGTCTAAGTCAACCGATTAAACGAGCGTTCGGGCACTGAGC
1 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
* * * * *
17404770 CGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGACTCGATCCCCCTCTG-GTGCTGTCGGTCT
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCT
* * **
17404834 CGCTGCCACAACCCTCGGTCCGA-CTGGGG
131 -GCTGCCACAACCCTCGGTCCAATC-CGAT
* * * * * * *
17404863 CTTAGACACGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGTGCCCAGT
1 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
* *
17404928 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGAT-C
*
17404993 TACTGCCACAACCCTCGGTCCAATCCGAT
130 TGCTGCCACAACCCTCGGTCCAATCCGAT
*
17405022 CTTAGACTA-GGAATGAACTCTGTATGC
1 CTTAGAC-ACGGAATGAACTCCGTATGC
17405049 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 69, Indels: 13
0.77 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 202 0.75
159 59 0.22
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCT
GCTGCCACAACCCTCGGTCCAATCCGAT
Found at i:17405573 original size:159 final size:157
Alignment explanation
Indices: 17405220--17405664 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 157
17405210 CGGTTGGGTT
* *
17405220 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAGCC
* * * * * * *
17405285 AGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCTCCCTGCGTGCTGTCGATCCTA
66 AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCTGATCCCCCCTACGTGCTGTCGATCCCA
* ** * * *
17405350 CTGCTGCAACACTCGGTTCGGTCCGATC
130 CTACCACAACACTCGGTCCGCTCCGAGC
* * * * *
17405378 TTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTTTGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAGC
* *
17405442 CAGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTACGTGCTGTC-AGTC
65 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGATCCCCC-CTACGTGCTGTCGA-TC
* * * *
17405506 CCGCTACCACAACCCTCGGTCCGACT-GGGGC
127 CCACTACCACAACACTCGGTCCG-CTCCGAGC
* * * ** *
17405537 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAGCC
* * * ** *
17405602 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGATCCCTCCTGTGTGCTATCGATCC
66 AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGATCCCCCCTACGTGCTGTCGATCC
17405665 TGCTATCGCA
Statistics
Matches: 234, Mismatches: 46, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 106 0.45
159 125 0.53
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAGCC
AGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGATCCCCCCTACGTGCTGTCGATCCCAC
TACCACAACACTCGGTCCGCTCCGAGC
Found at i:17405664 original size:672 final size:671
Alignment explanation
Indices: 17404548--17405786 Score: 1653
Period size: 672 Copynumber: 1.8 Consensus size: 671
17404538 CTCCATATGC
* *
17404548 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* * ** *
17404613 GGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGGTCCGATCCCCCCTACATGCTATCGATACTG
66 AGCCAGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACATGCTATCGATACTA
* * *
17404678 CTACCGCAACACTCGGTCTAGTCCAATCTTAGATTGGGAATGAACTCCGTATGTCTAAGTCAACC
131 CTACCGCAACACTCGGTCTAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* ** *
17404743 GATTAAACGAGCGTTCGGGCACTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGACT
196 CACGAAACGAGCGTTCGGGCACTGAGCCAGTCGGAGAGGCATAATGCACAAGCCGGGGATCGACT
* * * *
17404808 CGATCCCCCTCTGGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACACG
261 CGATCCCCCTCTCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACACG
* **
17404873 GAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGTGCCCAGTCGGCCAGAGA
326 GAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACCCAGTCGGCCAGAGA
* *
17404938 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCTACTGCCACA
391 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTATCGATCCTACTACCACA
** * *
17405003 ACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACT-CTGTATGCTTAGACTGG-GCATGAA-
456 ACCCTCCATCCAATCCGATCTTAGACT-GGAATGAACTAC-ATAGGCTTAGACTGGAG-ATGAAC
* * *
17405065 ATTCGTATGCCTAAGTCATCCCACGAAACGAGCGTACGGGCACTCAGCCGATCGGAGAGGCATAA
518 A-CCGTATGCCTAAGTCAGCCCACGAAACGAGCATACGGGCACTCAGCCGATCGGAGAGGCATAA
17405130 TGCGCAAGCCGAGGATCAGCTCAGTCCCCCTCTGGGTGTTGTCGATCCCGCTGTCGGTGCTGCTG
582 TGCGCAAGCCGAGGATCAGCTCAGTCCCCCTCTGGGTGTTGTCGATCCCGCTGTCGGTGCTGCTG
17405195 CCATAACCCTCGATCCGGTTGGGTT
647 CCATAACCCTCGATCCGGTTGGGTT
* ** * *
17405220 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * * * * *
17405285 AGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCTCCCTGCGTGCTGTCGATCCTA
66 AGCCAGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACATGCTATCGATACTA
* * * * *
17405350 CTGCTGCAACACTCGGT-TCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAAC
131 CTACCGCAACACTCGGTCT-AGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** *
17405414 CCACGAAATGAGTGTTTGGGTGCTGAGCCAGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGC
195 CCACGAAACGAGCGTTCGGGCACTGAGCCAGTCGGAGAGGCATAATGCACAAGCCGGGGATC-GA
17405479 CT-GATCCCCCTCTACGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGAC
259 CTCGATCCCCCTCT-CGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGAC
* * * * * *
17405543 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGTCGGTCGG
323 ACGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACCCAGTCGGCCAG
* ** * * * *
17405608 AGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGAT-CCCTCCTGTGTGCTATCGATCCTGCTATC
388 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTATCGATCCTACTACC
* ** *
17405672 GCAACCCTCCATCCGGTCTGATCTTAGACTGGAATGAACTACATAGGCTTAGACTGGAGATGAAC
453 ACAACCCTCCATCCAATCCGATCTTAGACTGGAATGAACTACATAGGCTTAGACTGGAGATGAAC
* * * * **
17405737 ACCGTATGCCTATGTCAGCCCATGAAATGAGCATGCGGGTGCTCAGCCGA
518 ACCGTATGCCTAAGTCAGCCCACGAAACGAGCATACGGGCACTCAGCCGA
17405787 CCAAAGAGGC
Statistics
Matches: 481, Mismatches: 80, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
671 69 0.14
672 275 0.57
673 137 0.28
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (671 bp):
TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
AGCCAGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACATGCTATCGATACTA
CTACCGCAACACTCGGTCTAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTTCGGGCACTGAGCCAGTCGGAGAGGCATAATGCACAAGCCGGGGATCGACT
CGATCCCCCTCTCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACACG
GAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACCCAGTCGGCCAGAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTATCGATCCTACTACCACA
ACCCTCCATCCAATCCGATCTTAGACTGGAATGAACTACATAGGCTTAGACTGGAGATGAACACC
GTATGCCTAAGTCAGCCCACGAAACGAGCATACGGGCACTCAGCCGATCGGAGAGGCATAATGCG
CAAGCCGAGGATCAGCTCAGTCCCCCTCTGGGTGTTGTCGATCCCGCTGTCGGTGCTGCTGCCAT
AACCCTCGATCCGGTTGGGTT
Found at i:17406625 original size:159 final size:159
Alignment explanation
Indices: 17406302--17406806 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 159
17406292 AACTCCGTAT
* * * * * **
17406302 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGCGTACGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAAAAG-GCGTGCGGGCACTC
* * * * * * * * * *
17406365 AGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGACCGATCTGATCCCCCCCTGCATGCTATCAA
64 AGTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGA
* * ** * * * **
17406430 TACTGCTACTGCAACACTCAGT-CTAGTCCGA
129 TCCTGCTGCCACAACCCTCGGTCCGA-TCTAA
* * * * * ** *
17406461 TCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCAATG-AAATGAGCGTTTGGGCACTGA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAAAAG-GCGTGCGGGCACTCA
* * * * *
17406525 GTCGGCCGGAGAGGCATAATGCACAAGTCGGGGATCAGCTCGATCCCCCTCTGCGTGCTGTC-AG
65 GTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGA-
**
17406589 T-CTCGCTGCCACAACCCTCGGTCCGA-CTGGG
129 TCCT-GCTGCCACAACCCTCGGTCCGATCT-AA
* * **
17406620 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAAAAGGCGTGCGGGCACTCA
* *
17406684 GTCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTCGAT
65 GTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGAT
*
17406749 CCTGCTGCCACAACCCTCGGTTCGATCTAA
130 CCTGCTGCCACAACCCTCGGTCCGATCTAA
*
17406779 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
17406807 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.02
159 263 0.94
160 12 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAAAAGGCGTGCGGGCACTCAG
TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGATCTAA
Found at i:17406816 original size:26 final size:26
Alignment explanation
Indices: 17406780--17406832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17406770 TCGATCTAAT
17406780 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17406806 CTTAGACTGGGGATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17406832 C
1 C
17406833 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17407292 original size:673 final size:667
Alignment explanation
Indices: 17406304--17407527 Score: 1673
Period size: 673 Copynumber: 1.8 Consensus size: 667
17406294 CTCCGTATGC
* *
17406304 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
1 TTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCC
* * *
17406369 GACCGGAGAGGCAGAATGCACAAGTCGGGGACCGATCTGATCCCCCCCTGCATGCTATCAATACT
66 GACCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCTGATCCCCCCCTACATGCTATCAATACT
* * *
17406434 GCTACTGCAACACTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAAC
131 ACTACCGCAACACTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
17406499 CAATGAAATGAGCGTTTGGGCACTGAGTCGGCCGGAGAGGCATAATGCACAAGTCGGGGATCAGC
196 CAATGAAACGAACGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAGC
* *
17406564 TCGATCCCCCTCTGCGTGCTGTCAGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACA
261 TCGATCCCCCTCTACGTGCTGTCAGTCTCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACA
* * *
17406629 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCGTGCGGGTGCTC-AGTCGGCCGG
326 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCGTGCAGGCGCTCAACT-GGCCGG
* * * *
17406693 AGAGGTAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCC
390 AGAGGCAGAATGCACAAGCCGAGGATCAACCCGAT--CCCCCTGCGTGCTGTCGATCCTACTGCC
* * * *
17406758 ACAACCCTCGGTTCGATCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGCA
453 ACAA--C-C--TTCGATCTAATCTGAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAA
*
17406823 CTCCGTATGCCTAAGTCATCCCACGAAACGAGCATACGGGCACTCAACCGGCCGGAGAGGCATAA
513 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAACCGGCCGGAGAGGCATAA
17406888 TGCGTAAGCCGAGGATTAGCTCGGTCCCCCTCTACGTGCTGTCGATCCAGCTGTCAGTCCTGTTG
578 TGCGTAAGCCGAGGATTAGCTCGGTCCCCCTCTACGTGCTGTCGATCCAGCTGTCAGTCCTGTTG
17406953 CCATAACCCTCGATCCGGCTGGGTT
643 CCATAACCCTCGATCCGGCTGGGTT
* * *
17406978 TTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCTTGCGGGTGCTCAGTC
1 TTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCC
* * * ** *
17407043 GATCGGAGAGGCAGAATG-AGCAAGCCGGGGACCGACCTGAT-CCCTCCTACGTGCTATTGATCC
66 GACCGGAGAGGCAGAATGCA-CAAGCCGGGGACCGACCTGATCCCCCCCTACATGCTATCAATAC
* * * * * * *
17407106 TACTGCCGCAACACTCGGTTTGGTCTGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAA
130 TACTACCGCAACACTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * * * * *
17407171 CCCATGAAACGAATGTTCGGGTGCTGAGCCGATCGGAGAGGCATAATGGATAAGCCGGTGATGAG
195 CCAATGAAACGAACGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAG
* * *
17407236 CTCGATCCCCCTCTACGTGCTGTCGGTC-CTGCTGCCATAACCCTCGATCTGACTGGGGCTTAGA
260 CTCGATCCCCCTCTACGTGCTGTCAGTCTC-GCTGCCACAACCCTCGATCCGACTGGGGCTTAGA
* * * *
17407300 CATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAAAGGGCGTGCAGGCGCTCAACTGGCTG
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCGTGCAGGCGCTCAACTGGCCG
* * * *
17407365 GAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCTGCGTGCTGTTGATCCTACTGCCG
389 GAGAGGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCCTGCGTGCTGTCGATCCTACTGCCA
* ** * ** *
17407430 CAACCTTCGGTCTGGTCTGAGACTAGGAGTGAACTCTGTATTCTTAGACTAGGGATGAACTCCGT
454 CAACCTTCGATCTAATCTGAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGT
* *
17407495 ATGCCTAAGTCAACCCATGAAACGAGCTTACGG
519 ATGCCTAAGTCAACCCACGAAACGAGCATACGG
17407528 ATGCTCAACC
Statistics
Matches: 474, Mismatches: 73, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
666 79 0.17
668 1 0.00
669 1 0.00
671 29 0.06
672 1 0.00
673 265 0.56
674 98 0.21
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (667 bp):
TTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCTGATCCCCCCCTACATGCTATCAATACT
ACTACCGCAACACTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CAATGAAACGAACGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAGC
TCGATCCCCCTCTACGTGCTGTCAGTCTCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGCGTGCAGGCGCTCAACTGGCCGGA
GAGGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCCTGCGTGCTGTCGATCCTACTGCCACA
ACCTTCGATCTAATCTGAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAACCGGCCGGAGAGGCATAATGCGTAAG
CCGAGGATTAGCTCGGTCCCCCTCTACGTGCTGTCGATCCAGCTGTCAGTCCTGTTGCCATAACC
CTCGATCCGGCTGGGTT
Found at i:17407332 original size:159 final size:158
Alignment explanation
Indices: 17406937--17407338 Score: 411
Period size: 158 Copynumber: 2.5 Consensus size: 158
17406927 TGTCGATCCA
* * * * * *
17406937 GCTGTCAGTCCTGTTGCCATAACCCTCGATCCGGCTGGGTTTTAGACATGAAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCATAACCCTCGATCTGACTGGGTCTTAGACATGGAATGAACTCCGTAT
** *
17407002 GCCTAAGCCAACCCACAAAACGAGCTTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGAGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCTTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGAGCAAG
*
17407067 CCGGGGACCGACCTGATCCCTCCTACGT
131 CCGGGGACCGACCTGATCCCCCCTACGT
* * * * ** * * * * * * *
17407095 GCTATTGATCCTACTGCCGCAACACTCGGTTTGGTCT-GATCTTAGAC-TGGGAATTAACTCTGT
1 GCTGTCGGTCCTGCTGCCATAACCCTCGATCT-GACTGGGTCTTAGACAT-GGAATGAACTCCGT
* * *
17407158 ATGCCTAAGTCAACCCATGAAACGAATG-TT-CGGGTGCTGAGCCGATCGGAGAGGCATAATG-G
64 ATGCCTAAGCCAACCCATGAAACG-A-GCTTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGAG
* * * *
17407220 ATAAGCCGGTGA-TGAGCTCGATCCCCCTCTACGT
127 -CAAGCCGGGGACCGACCT-GATCCCCC-CTACGT
* *
17407254 GCTGTCGGTCCTGCTGCCATAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAGCTCCGTAT
1 GCTGTCGGTCCTGCTGCCATAACCCTCGATCTGACTGGGTCTTAGACATGGAATGAACTCCGTAT
17407319 GCCTAAGCCAACCCATGAAA
66 GCCTAAGCCAACCCATGAAA
17407339 AGGGCGTGCA
Statistics
Matches: 190, Mismatches: 45, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.03
158 107 0.56
159 75 0.39
160 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (158 bp):
GCTGTCGGTCCTGCTGCCATAACCCTCGATCTGACTGGGTCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGCTTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGAGCAAG
CCGGGGACCGACCTGATCCCCCCTACGT
Found at i:17408194 original size:26 final size:26
Alignment explanation
Indices: 17408156--17408208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17408146 GGCTCAAAAT
17408156 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17408182 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17408208 C
1 C
17408209 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17408382 original size:26 final size:26
Alignment explanation
Indices: 17408343--17408393 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17408333 GGTCTGATCG
*
17408343 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
17408369 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
17408394 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:17408486 original size:185 final size:185
Alignment explanation
Indices: 17408158--17408503 Score: 435
Period size: 185 Copynumber: 1.9 Consensus size: 185
17408148 CTCAAAATCT
17408158 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * *
17408223 GAAACGAGGGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGGCCCGG
66 GAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCGA
*
17408288 TCCCCCCCTACGTGCTG-TCGATCCTGCTGCCACAACGCGCAGTCCGGTCTGATCG
131 TCCACCCCTACGTGCTGCT-GATCCTGCTGCCACAACGCGCAGTCCGGTCTGATCG
*** * * *
17408343 TAGACTGGGAATGAACTTTGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * ** * * * * * * * *
17408407 TGAAATGAGCGTGTGGGTGCTCAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTG
65 CGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCG
* *
17408472 ATCCATCTCTACGTGCTGCTGATCCTGCTGCC
130 ATCCACCCCTACGTGCTGCTGATCCTGCTGCC
17408504 GGTCCTGCTG
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
184 1 0.01
185 132 0.99
186 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (185 bp):
TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCAGCCCGA
TCCACCCCTACGTGCTGCTGATCCTGCTGCCACAACGCGCAGTCCGGTCTGATCG
Found at i:17408845 original size:356 final size:356
Alignment explanation
Indices: 17408183--17408939 Score: 902
Period size: 356 Copynumber: 2.1 Consensus size: 356
17408173 CTCCATATGC
*
17408183 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGGGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* *
17408248 GGCCAGAGAGGCAGAATACACAAGCCAGGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCCT
66 GGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGTCGATCCT
* * *** * *
17408313 GCTGCCACAACGCGCAGTCCGGTCTGATCGTAGACTGGGAATGAACTTTGTATGCTTAGACTGGG
131 ACTGCCACAACGCGCAGTCCGATCTGATCGTAGACTGGGAATGAACTCCATATGCTTACACTAGG
* * *** * *
17408378 GATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGTGCTCAGCTGGCCGGAGAG
196 GATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCCAGAGCTCAGCTGACCGGAGAG
* *
17408443 GCATAATGCGCAAGCCGGGGATCAGCCTGATCCATCTCTACGTGCTGCTGATCCTGCTGCCGGTC
261 GCATAATGCGCAAGCCGAGGATCAGCCCGATCCATCTCTACGTGCTGCTGATCCTGCTGCCGGTC
17408508 CTGCTGCCACAACCTTCGATCTGACCGGGGT
326 CTGCTGCCACAACCTTCGATCTGACCGGGGT
* *
17408539 TTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCCACGAAACGAGCGTGCGGGCGCTCAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCACTCAAC
* * * ** * * *
17408604 TGGCCAGAGAGGCAGAATGCGCAAGCC-GAGGATCGACTTGAT-CCCCCCTGCGTGCTGTTGGTC
65 CGGCCAGAGAGGCAGAATACACAAGCCAG-GGATCGACCCGATCCCCCCCTACGTGCTGTCGATC
* ** * *
17408667 CTACTGTCGTAA-GC-CTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTACAC
129 CTACTGCCACAACGCGC--AGTCCGATCTGATCGTAGACTGGGAATGAACTCCATATGCTTACAC
* *
17408730 TAGGGATGAACTCTGTATGCCTAAGTCAACCCCCGAAATGAGCATGCCAGAGCTCAG-TCGATCG
192 TAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCCAGAGCTCAGCT-GACCG
* * * *
17408794 GAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCC-TCCTCTGCGTGCTGCCGATTCC-ACT
256 GAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCAT-CTCTACGTGCTGCTGA-TCCTGCT
* ** * * * * * ** *
17408857 GTCTATCCTAC-GACTACAACCCTC-AGTCCGGCTAGGGC
319 GCCGGTCCTGCTG-CCACAACCTTCGA-TCTGACCGGGGT
*
17408895 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
17408940 AATGTCACGG
Statistics
Matches: 339, Mismatches: 53, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
354 1 0.00
355 15 0.04
356 260 0.77
357 63 0.19
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (356 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
GGCCAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACGCGCAGTCCGATCTGATCGTAGACTGGGAATGAACTCCATATGCTTACACTAGG
GATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCCAGAGCTCAGCTGACCGGAGAG
GCATAATGCGCAAGCCGAGGATCAGCCCGATCCATCTCTACGTGCTGCTGATCCTGCTGCCGGTC
CTGCTGCCACAACCTTCGATCTGACCGGGGT
Found at i:17414758 original size:26 final size:26
Alignment explanation
Indices: 17414729--17414781 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17414719 CCGATCTGAT
*
17414729 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGCATG
17414755 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGACTAGGGATGAACTCCGCATG
17414781 C
1 C
17414782 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGCATG
Found at i:17415108 original size:157 final size:156
Alignment explanation
Indices: 17414914--17415409 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 156
17414904 CTGACTGGGG
* * *
17414914 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGGAACGAGCGTGCGGGCGCTTAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
17414978 CTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTGTACTACGATCCT
65 CTGGACGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCTGCGTGCTACGATCCT
* *
17415043 ACTATCGGAACCCTCGGTCTGGTCTGAT
129 ACTACCGCAACCCTCGGTCTGGTCTGAT
* ** * * *
17415071 CTTAGATTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
17415136 CGAACGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCATGCTGTCGGTCC
66 TGGACGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCC-CCCTGCGTGCT-ACGATCC
* * **
17415201 CACTACCACAACCCTCGGTCTGG-CTGGGG
128 TACTACCGCAACCCTCGGTCTGGTCT-GAT
* * * *
17415230 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGGTGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTCA
* * * *
17415294 GTTGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC-AGTCCCCCCTGCGTGCTGCTGAT
64 GCTGGACGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGA-TCCCCCCTGCGTGCTAC-GAT
* * ** **
17415358 CCTACTGCCGTAACCCTCGGTCCAGTCCAAT
126 CCTACTACCGCAACCCTCGGTCTGGTCTGAT
*
17415389 CTTAGACTGGGAATGAACTCC
1 CTTAGAATGGGAATGAACTCC
17415410 ATATACTTAG
Statistics
Matches: 270, Mismatches: 58, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 94 0.35
158 11 0.04
159 119 0.44
160 45 0.17
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGACGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTACGATCCTAC
TACCGCAACCCTCGGTCTGGTCTGAT
Found at i:17415282 original size:159 final size:159
Alignment explanation
Indices: 17414754--17415352 Score: 545
Period size: 159 Copynumber: 3.8 Consensus size: 159
17414744 AACTCCGTAT
* ** * **
17414754 GCTTAGAC-TAGGGATGAACTCCGC-ATGCCTAAATCAACCCACGAAATGAGCGTGCAAGCGCTG
1 GCTTAGACATAGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTG
* * * * * *
17414817 AGCCGGCCGAAGAGGCATAATGCGTAAGCCGAGGAT-GGACCC-AGTCCCGCTTTACGTGCTGCC
65 AGCCGGACGAAGAGGCATAATGCGCAAGCCGGGGATCGG-CCCGA-TCCC-CTCTGCGTGCTGAC
* * * *
17414880 GGTCTCGCTGCCACAACCCTCGGTCTGACTGGG
127 GGTCCCACTACCACAACCCTCGGTCTGGCTGGG
* * * *
17414913 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGGAACGAGCGTGCGGGCGCTTA
1 GCTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * * * * * * *
17414977 GCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTGTACT-ACGATC
66 GCCGGACGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGACGGTC
* * ** *
17415041 CTACTATCGGAACCCTCGGTCTGGTCT-GA
131 CCACTACCACAACCCTCGGTCTGG-CTGGG
* * * * ** * *
17415070 TCTTAGA-TTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * *
17415134 GCCGAACGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCATGCTGTCGGT
66 GCCGGACGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCC-CTCTGCGTGCTGACGGT
17415199 CCCACTACCACAACCCTCGGTCTGGCTGGG
130 CCCACTACCACAACCCTCGGTCTGGCTGGG
* * * *
17415229 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGGTGCTC
1 GCTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGCGCTG
** * * * *
17415293 AGTTGG-CCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC-AGTCCCCCCTGCGTGCTG
65 AGCCGGACGA-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCTCTGCGTGCTG
17415353 CTGATCCTAC
Statistics
Matches: 349, Mismatches: 78, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 115 0.33
158 17 0.05
159 168 0.48
160 48 0.14
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
GCCGGACGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGACGGTC
CCACTACCACAACCCTCGGTCTGGCTGGG
Found at i:17415785 original size:26 final size:26
Alignment explanation
Indices: 17415756--17415811 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17415746 CCGGTCTGAT
*
17415756 CTTAGAC-TGGCAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
17415782 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17415808 CTTA
1 CTTA
17415812 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17415881 original size:367 final size:356
Alignment explanation
Indices: 17415206--17415859 Score: 790
Period size: 367 Copynumber: 1.8 Consensus size: 356
17415196 GGTCCCACTA
* * * * *
17415206 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
* ** * *
17415271 GAAACGAGCGTGTAGGGTGCTCAGTTGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCA
66 GAAACGAGCGTGTAGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCA
* ** * *
17415336 GTCCCCCCTGCGTGCTGCTGATCCTACTGCCGTAACCCTCGGTCCAGTCCAATCTTAGACTGGGA
131 GTCCCCCCTGCGTGCTACCAATCCTACTGCCGTAACCATCGGTCCAGTCCAATCTTAGACTGGCA
* * * * *
17415401 ATGAACTCCATATACTTAGATTGGAGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCG
196 ATGAACTCCATATACTTAGAATGGAGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA
* * *
17415466 TGCGGGTGCTCAGTCGGCCGGAGAGGCGTAATGCACAAACCGAGGATCAACCCGGTCTCTCTCTA
261 TGCAGGCGCTCAGCCGGCCGGAGAGGCGTAATGCACAAACCGAGGATCAACCCGGTCTCTCTCTA
17415531 CGTGCTACCGATCCCGCTGCCGGTCCTGATG
326 CGTGCTACCGATCCCGCTGCCGGTCCTGATG
* *
17415562 CCACAACCCTCAGTTTGACTGGGGCTTAGACATGGAATGAACTTCATACGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
* * * * * *
17415627 GAAACGAGCGTGT-GGGCGCTTAGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
66 GAAACGAGCGTGTAGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCA
* * * * **
17415691 GTCCCCCCTGTGTGCTACCAATCCTGCTGCTGGTCCTGTTGTCGCAACCATTGGTCCGGTCTGAT
131 GTCCCCCCTGCGTGCTACCAAT-C--CTACT-G-CC----GT---AACCATCGGTCCAGTCCAAT
** * *
17415756 CTTAGACTGGCAATGAACTCTGTATGCTTAGACATGGA-ATGAACTCCGTATGCTTAAGCCAACC
184 CTTAGACTGGCAATGAACTCCATATACTTAGA-ATGGAGATGAACTCCGTATGCCTAAGCCAACC
* *
17415820 CACGAAACGAGCATGCAGGCGCTTAGCCGGTCGGAGAGGC
248 CACGAAACGAGCATGCAGGCGCTCAGCCGGCCGGAGAGGC
17415860 AGAATGTGCA
Statistics
Matches: 242, Mismatches: 43, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
355 58 0.24
356 72 0.30
358 4 0.02
359 1 0.00
360 2 0.01
364 2 0.01
367 99 0.41
368 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (356 bp):
CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAC
GAAACGAGCGTGTAGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCA
GTCCCCCCTGCGTGCTACCAATCCTACTGCCGTAACCATCGGTCCAGTCCAATCTTAGACTGGCA
ATGAACTCCATATACTTAGAATGGAGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA
TGCAGGCGCTCAGCCGGCCGGAGAGGCGTAATGCACAAACCGAGGATCAACCCGGTCTCTCTCTA
CGTGCTACCGATCCCGCTGCCGGTCCTGATG
Found at i:17416076 original size:159 final size:155
Alignment explanation
Indices: 17415782--17416284 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 155
17415772 ACTCTGTATG
* * * * *
17415782 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCATGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
** * * *
17415847 CGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCAGCCCGATCCCTCCCTGTGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATACGCAAGCTGAGGATGA-CCCGGT-CC-CCCTCTGTGCTGTCGATCC
* *
17415912 TACTGCCGTAACTCTCGGTCCGGTTCGAT
128 TACTGCCGCAACCCTCGGTCCGG-TCGAT
* * * * *
17415941 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCACTGAA
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * *
17416005 CCGGTCGGAGAGGCATAATACGCAAGCTGGGGACTGACCCGGTCCCCCTCTGCATGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATACGCAAGCTGAGGA-TGACCCGGTCCCCCTCTG--TGCTGTCGATC
* * * * * **
17416070 CCACTGCCACAACCCTTGGTCCGACTGGGG
127 CTACTGCCGCAACCCTCGGTCCG-GTCGAT
* * *
17416100 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCG-G
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT-GAG
* * ** *
17416164 CCGGTCGGAGAGGCAGAA-AGCGCAAGCCGAGGATTGGCTTGGTCCCCCCTATGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATA-CGCAAGCTGAGGA-TGACCCGGT-CCCCCTCTGTGCTGTCGATC
* *
17416228 CTGCTGCAGCAACCCTCGGTCCGGTCTGAT
127 CTACTGCCGCAACCCTCGGTCCGGTC-GAT
*
17416258 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17416285 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 54, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
157 8 0.03
158 58 0.21
159 200 0.72
160 13 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
CGGTCGGAGAGGCAGAATACGCAAGCTGAGGATGACCCGGTCCCCCTCTGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCGGTCGAT
Found at i:17416294 original size:26 final size:26
Alignment explanation
Indices: 17416258--17416310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17416248 CCGGTCTGAT
17416258 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17416284 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17416310 C
1 C
17416311 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17423258 original size:159 final size:158
Alignment explanation
Indices: 17422914--17423414 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 158
17422904 AACTCCATTT
* * * * *
17422914 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCATTCAA
* * * ** *
17422979 CCGACCGAAGAGGTAGAATGCACAAGTTGGGAATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
66 CAGACCAAAGAGGCAGAATGCACAAGCAGGGAATCGGCCTGATCCCCCCTGCGTGCTATAGATCC
* * * *
17423044 TGCTGTCGCAACCCTCGATCCGGTCTGA
131 TACTGCCACAACCCTCGATCCGGACTGA
* * ** * *
17423072 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTAAACCCATGAAATGAGCGTGCAGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCATTCA
* * *
17423136 ACTAG-CCAAAGAGGCATAATGCGCAAGCCAGGG-ATCGGCCTGATCCCCCTCTGCGTGCTGTTA
65 AC-AGACCAAAGAGGCAGAATGCACAAG-CAGGGAATCGGCCTGATCCCCC-CTGCGTGCT-ATA
*
17423199 G-TCCTACTGCCACAACCCTCGATCC-GACTGGG
126 GATCCTACTGCCACAACCCTCGATCCGGACT-GA
* * * **
17423231 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCATTCA-
* ** * * **
17423296 TC-GACCGGAGAGGCAGAATGCACAAGCCAGGG-ATCGGACCAG-T-CCCCCTACGTGCTACCGA
65 ACAGACCAAAGAGGCAGAATGCACAAG-CAGGGAATCGG-CCTGATCCCCCCTGCGTGCTATAGA
* * * *
17423357 TCCTGCTGCCGCAACCCTCGATCCAGTCTGA
128 TCCTACTGCCACAACCCTCGATCCGGACTGA
* * *
17423388 TCTTAGAC-TGGGGATGAACTCCATATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
17423415 GTTAGACTGG
Statistics
Matches: 277, Mismatches: 53, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 54 0.19
158 98 0.35
159 116 0.42
160 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCATTCAA
CAGACCAAAGAGGCAGAATGCACAAGCAGGGAATCGGCCTGATCCCCCCTGCGTGCTATAGATCC
TACTGCCACAACCCTCGATCCGGACTGA
Found at i:17424577 original size:157 final size:154
Alignment explanation
Indices: 17424080--17424577 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 154
17424070 GCTCAAAATT
* * * * * * *
17424080 TTAGACTGGGAATGAACTCCATATGCCTAAACCAACCCACGGAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCC
** * * * *
17424145 AGTCAGAGAGGCAAAATGCGCAAGCTAGGGATCAGCCCGTTCCCCTCTGCGTGCTGTTGATCTTG
66 -GTCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCC-CT-CGTGCTGTCGATCCTA
* *
17424210 CTGCTGTAACCCTCAGTCCGATCCGATC
128 CTGC-GCAACCCTCAGTCCGGTCCGATC
* * * * * * *
17424238 TTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGGGCGTGC-GGAAGCTGAGC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCA-CTCAGC
* * * * *
17424302 C-TACCGA-AGGGCATAATGCGCAAGCCGGGGATCGGTCCGATCCCCCTCTGTATGCTGTCGGTC
65 CGT-CAGAGA-GGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTC-G--TGCTGTCGATC
* * * * * **
17424365 CCACTGCCACAACCCTCAATCC-GACAGGGGC
125 CTACTG-CGCAACCCTCAGTCCGGTC-CGATC
* * *
17424396 TTAGAC-ATGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTTAGCC
1 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCC
* * *
17424460 GGTCAGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTACGTGCTGTCAATCCTAC
66 -GTCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCT-CGTGCTGTCGATCCTAC
*
17424525 TGTCGCAACCCTCGGTCCGGTCCGATC
129 TG-CGCAACCCTCAGTCCGGTCCGATC
*
17424552 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
17424578 TTAGACTACG
Statistics
Matches: 264, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
155 1 0.00
156 39 0.15
157 100 0.38
158 120 0.45
159 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (154 bp):
TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCC
GTCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCGTGCTGTCGATCCTACTG
CGCAACCCTCAGTCCGGTCCGATC
Found at i:17424955 original size:26 final size:26
Alignment explanation
Indices: 17424917--17424966 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17424907 CCAGTCCAAT
17424917 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
17424943 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
17424967 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:17425431 original size:26 final size:26
Alignment explanation
Indices: 17425402--17425454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17425392 TCGATCTGAC
17425402 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
17425428 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17425454 C
1 C
17425455 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17426142 original size:26 final size:26
Alignment explanation
Indices: 17426113--17426165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17426103 GGCTCAAAAT
*
17426113 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17426139 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17426165 C
1 C
17426166 CTCAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17427385 original size:26 final size:26
Alignment explanation
Indices: 17427347--17427397 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427337 GGCTCAAAAT
17427347 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17427373 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
17427398 AACTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17427885 original size:26 final size:26
Alignment explanation
Indices: 17427849--17427901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17427839 CCAGTCTGAT
*
17427849 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17427875 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17427901 C
1 C
17427902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17428229 original size:169 final size:170
Alignment explanation
Indices: 17427874--17428240 Score: 370
Period size: 169 Copynumber: 2.2 Consensus size: 170
17427864 AACTCCGTAT
* * * *
17427874 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAA
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCAA
* * * ***
17427939 CCGGCCGAAAAGGATAATGCGTAAGTCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGTTGATCC
66 CCAGCCGAAAAGGAAAATGCGCAAGTCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
* * *
17428004 TGTTGCTGATCCTGCTGCCACAACCCTCGGTCCAGCTGGG
131 TGCTGCTGATCCTGCTGCCACAACCCTCGGTCCAGCTCGA
* * *
17428044 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTG-TGGCTGCTC
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGG-TGCTC
* * * * *
17428107 AGCCAGCTGGAGAGGCAAAATGCGCAAGTCGGGGATC-GACTC-GGT-CCCC-CTGCGTGCTACC
64 AACCAGCCGAAAAGG-AAAATGCGCAAGTCGAGGATCAG-C-CAGGTCCCCCTCTGCGTGCTACC
* * * * *
17428168 GATCTTGCTGCTGGTCCTGCTGTCGCAACCTTCGGTCCAG-TCCGA
126 GATCCTGCTGCTGATCCTGCTGCCACAACCCTCGGTCCAGCT-CGA
* * *
17428213 TCTTAGATTGGGAATGAACTCCATATGC
1 GCTTAGAATGGGAATGAACTCCGTATGC
17428241 TTAGACATGG
Statistics
Matches: 160, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
168 2 0.01
169 68 0.43
170 66 0.41
171 23 0.14
172 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (170 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCAA
CCAGCCGAAAAGGAAAATGCGCAAGTCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCTGATCCTGCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:17428612 original size:159 final size:157
Alignment explanation
Indices: 17428239--17428763 Score: 499
Period size: 158 Copynumber: 3.3 Consensus size: 157
17428229 AACTCCATAT
* * *
17428239 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * *
17428304 CCGGCC-AGAGAGGC-TGAATACGCAAGCCGGGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGA
66 CCGACCGA-AGAGGCAT-AATGCACAAGCCGGGGATCGGCCCGATCCC-CCCTGCGTGCTGTCGA
* * *
17428367 TCCTACACCGTAACCCTCAGTACAGTCTGA
128 TCCCACACCATAACCCTCAGTACAGGCTGA
* * * * * *
17428397 TCTTAGAC-TGGGAATGAACTTCGTATGCATAGGTCAACCCACGAAACGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * *
17428461 GCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCTCCCTCTGCGTGCTG-CTGG
65 GCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATC-CCCCCTGCGTGCTGTC-GA
** *
17428525 TCCCATTGCCATAACCCTCAGT-CCGGCTGA
128 TCCCA-CACCATAACCCTCAGTACAGGCTGA
* * * * *
17428555 GGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * * * * * * *
17428620 GTCGATCG-AGAGGCAGAACGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGTTGTCTATC
65 GCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * ** * *
17428684 CTACAGTCGCAACCCTCAGT-CTGGCCCGA
130 CCACA-CCATAACCCTCAGTACAGG-CTGA
* *
17428713 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
17428764 ATGCAGGCAC
Statistics
Matches: 296, Mismatches: 59, Indels: 25
0.78 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 74 0.25
158 146 0.49
159 74 0.25
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
CCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
CACACCATAACCCTCAGTACAGGCTGA
Found at i:17430305 original size:184 final size:185
Alignment explanation
Indices: 17429996--17430643 Score: 701
Period size: 184 Copynumber: 3.5 Consensus size: 185
17429986 TCTGACTAAG
* * * * * *
17429996 GCTTAGA-GATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGCACGCGGGTGCTCA
1 GCTTAGACCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGTGCTCA
* * * * *
17430060 ACCGGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCA-GTCCCCCCTACGTGCTGTCGAT
66 ACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCAGGTCCCCCCTGCGTGCTGTCGAT
* * * *
17430124 GCTGCTGTCGCAACCCTTGATCTGATCTGATCTTAGAATTG-GAATGAACTTCGTAT
130 CCTGCTGACGCAACCCTTGATCAGGTCTGATCTTAGAA-TGAGAATGAACTTCGTAT
* * * *
17430180 GCTTAGA-C-TGGAGATGAACTCCGTATGCCTAAGTCAACCCATAAAAAGAGCGTGCGGGTGCTC
1 GCTTAGACCATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGTGCTC
* ** *
17430243 AACC-GACTGGAGAGGCAGAATGCGTAAGCCAAGGATTGCCCAGGTCCCCCCTGCGTGCTGTCGA
65 AACCAGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCAGGTCCCCCCTGCGTGCTGTCGA
* * * *
17430307 TCCTGCT-ACTGCAACCCTTGGTCAGGTCCGATCTTAGAATGAGAATGAACTCCGTAG
129 TCCTGCTGAC-GCAACCCTTGATCAGGTCTGATCTTAGAATGAGAATGAACTTCGTAT
* *
17430364 GCTTAGA-CATGGAATGAATTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
1 GCTTAGACCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGTGCTCA
* * * * *
17430428 GCCAGTCGGAGAGGTAGAATGCCTAAGCCGGGGATCGACTC-GGTCCCCCCTGCGTGCTATCGAT
66 ACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-CCCAGGTCCCCCCTGCGTGCTGTCGAT
* * * * * * *
17430492 CCTGTTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAAC-TCATAT
130 CCTGCTGACGCAACCCTTGATCAGGTCTGATCTTAGAATGAGAATGAACTTCGTAT
* * *
17430547 GCTTAGTACCATGGAAATGAACTCCATCATGCCTTAAGCCAACCC-CGAAACGAGCGTGCGGG-G
1 GCTTAG-ACCATGG-AATGAACTCCGT-ATGCC-TAAGCCAACCCACAAAACGAGCATGCGGGTG
*
17430610 CCTCAGCCAGTCGGAGA-GCAGAATGCGTAAGCCG
62 -CTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCG
17430644 AGGTGACTGG
Statistics
Matches: 391, Mismatches: 58, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
183 23 0.06
184 281 0.72
185 14 0.04
186 26 0.07
187 36 0.09
188 11 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGTGCTCA
ACCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCAGGTCCCCCCTGCGTGCTGTCGATC
CTGCTGACGCAACCCTTGATCAGGTCTGATCTTAGAATGAGAATGAACTTCGTAT
Found at i:17430368 original size:26 final size:26
Alignment explanation
Indices: 17430339--17430388 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17430329 CAGGTCCGAT
17430339 CTTAGA-ATGAGAATGAACTCCGTAGG
1 CTTAGACATG-GAATGAACTCCGTAGG
*
17430365 CTTAGACATGGAATGAATTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
17430389 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAGG
Found at i:17431084 original size:25 final size:26
Alignment explanation
Indices: 17431050--17431101 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
17431040 CTGATTTGAT
17431050 CTTAGACTGG-GAATGAACTCC-TATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
17431075 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
17431101 C
1 C
17431102 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:17432640 original size:26 final size:26
Alignment explanation
Indices: 17432602--17432654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17432592 GGCTCAAACT
*
17432602 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17432628 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17432654 C
1 C
17432655 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17433699 original size:26 final size:26
Alignment explanation
Indices: 17433661--17433713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17433651 CTGGTCTGAT
*
17433661 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17433687 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17433713 C
1 C
17433714 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17434400 original size:26 final size:26
Alignment explanation
Indices: 17434371--17434423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17434361 CCAGTCTGAT
*
17434371 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCGGTATG
*
17434397 CTTAGACATTGAATGAACTCGGTATG
1 CTTAGACATGGAATGAACTCGGTATG
17434423 C
1 C
17434424 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCGGTATG
Found at i:17434929 original size:27 final size:26
Alignment explanation
Indices: 17434877--17434930 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17434867 CCGGTCCAAT
*
17434877 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
17434903 CTTAGACTAGGG-ATGAACTCCTATATG
1 CTTAGACT-GGGAATGAACT-CTATATG
17434930 C
1 C
17434931 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17434980 original size:715 final size:711
Alignment explanation
Indices: 17433554--17434981 Score: 1697
Period size: 715 Copynumber: 2.0 Consensus size: 711
17433544 CGAGCGCTCA
* * *
17433554 GCCAGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCAATC
1 GCCAGCCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATC
* * * **
17433619 CTGCTGCTGGTCCTGCGGCCGCAATCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCAT
66 CTGCTGCTGGTCCTACGACCACAATCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTCAT
* * * * *
17433684 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTT
131 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGACACTC
* * * * * *
17433749 AGTCGATCGGAGAGGCAGAATACATAAGTCGAGGATCGACCTGGTCATCCCTACATGCTGTCAAT
196 AGCCGATCGGAGAGGCAGAATACACAAGCCGAGGATCGACCTGATCACCCCTACATGCTATCAAT
* * * * * * * *
17433814 CCTGCTATCGCAACCCTCGGTTTGGTCCAATCCTAGAGTGGGAATGAACTTCGTATGCCTAAGTT
261 CCTGCTACCACAACCCTCGGTCTGGTCCAATCCTAGACTGGGAATGAACTCCATATGCATAAGTC
** * * * **
17433879 AACCCACGAAATGAGCGTTCGGGCGCTGAGCCAGTCGGAGTGGCATAATGCGCAAGCCGGGGATC
326 AACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATC
* * ** * *
17433944 GACCCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTACCATGACCCTCGGTCCGACTGGGGCTTAG
391 GACCCGATCCCCCTCTGCATGCTGTAAGTCCCGCTACCACAACCCTCGCTCCGACTGCGGCTTAG
* * *
17434009 ACATGGAATGAACTCCCTATGTCAAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGCCAGTC
456 ACATGGAATGAACTCCCTATGCCAAAGCAAACCCACGAAACAGGAGTGCGGGCGCTCAGCCAGTC
* * *
17434074 GGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCTACTGC
521 GGAGAGGCAGAATGCGCAAGGCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTACTAC
* * ** * *
17434139 CGCAACCCTCGGTCTAGTCTGATCTTAGACTGGAAATAAACTCCGTATGCTTAGATTGGGGATGA
586 CGCAACCCTCGATCCAGTCCAATCTTAGACTGGAAATAAACTCCGTATGCTTAGACTAGGGATGA
* * *
17434204 ACTCCATATGCCTAAGTCAACCCACGAAATGAGCGATGCGGACGCTCAGCCGGTTGGAGAG
651 ACTCCATATGCCTAAGTCAACCCACGAAATCAGCGATGCGGACGCTCAGCCGATCGGAGAG
* * * ** * *
17434265 GCCAGCCGATGAGGCAGAATACGCAAGCCGAGGATCGGCTCGGT-CTTCTTACGTGCTGCCGATC
1 GCCAGCCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATC
* * * * *
17434329 CTGCTGCTGGTCCTATGATCACAATTCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC-TCTG
66 CTGCTGCTGGTCCTACGACCACAATCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTC-A
* ** * * *
17434393 TATGCTTAGACATTGAATGAACTCGGTATGCCTAAGCCAACCCATTAAAGGAGCGTACAGACGCT
130 TATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGACACT
* * * ***
17434458 CAGCCGGTCGGAGAGGCAGAATGCACAAGCC-AGGGATC-AGCCTGATCCCCCCTGTGTGCTATC
195 CAGCCGATCGGAGAGGCAGAATACACAAGCCGA-GGATCGA-CCTGATCACCCCTACATGCTATC
* * * *
17434521 GATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAA
258 AATCCTGCTACCACAACCCTCGGTCTGGTCCAATCCTAGACTGGGAATGAACTCCATATGCATAA
*
17434586 GTCAACCCACGAAACAAGCGTGCGGGCGCGTGAGCCCGGACCGCAAAAGGCATTAATGGCGC-AG
323 GTCAACCCACGAAACAAGCGTGCGGGCGC-TGAG-CCAG-CCG-AAAAGGCA-TAAT-GCGCAAG
* * * * * *
17434650 CTGGGGATCGACCTGATCCCCCTCTGCATGCTG-ACAGTCTCGCTGCCACAACCCTCGCTTCGGC
382 CCGGGGATCGACCCGATCCCCCTCTGCATGCTGTA-AGTCCCGCTACCACAACCCTCGCTCCGAC
* * * *
17434714 TGCGGCTTGGACATGGAATGAACTCCCTATGCCCAAGCAAACCCACGAAACAGGCGTGCGGGTGC
446 TGCGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCAAACCCACGAAACAGGAGTGCGGGCGC
* * * *
17434779 TTAGCC-GGCTGGAGAGGCAGAATGCGC-AGGCTGGGAATCGACTCGATCCCCCCTGTGTGCTGT
511 TCAGCCAGTC-GGAGAGGCAGAATGCGCAAGGCAGGG-ATCGACCCGATCCCCCCTGTGTGCTGT
* * * * *
17434842 CGATCCTACTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTA
574 CGATCCTACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGAAATAAACTCCGTATGCTTA
* * * *
17434907 GACTAGGGATGAACTCCTATATGCCTAAGTCAACCTATGAAA-CATGCG-TGCGGGCGCTCAGCT
639 GACTAGGGATGAACTCC-ATATGCCTAAGTCAACCCACGAAATCA-GCGATGCGGACGCTCAGCC
17434970 GATCGGAGAG
702 GATCGGAGAG
17434980 GC
1 GC
17434982 AGAATGCGTA
Statistics
Matches: 596, Mismatches: 107, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
709 4 0.01
710 246 0.41
711 43 0.07
712 3 0.01
713 2 0.00
714 14 0.02
715 255 0.43
716 29 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (711 bp):
GCCAGCCGAAGAGGCAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTGCCAATC
CTGCTGCTGGTCCTACGACCACAATCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTCAT
ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGACACTC
AGCCGATCGGAGAGGCAGAATACACAAGCCGAGGATCGACCTGATCACCCCTACATGCTATCAAT
CCTGCTACCACAACCCTCGGTCTGGTCCAATCCTAGACTGGGAATGAACTCCATATGCATAAGTC
AACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATC
GACCCGATCCCCCTCTGCATGCTGTAAGTCCCGCTACCACAACCCTCGCTCCGACTGCGGCTTAG
ACATGGAATGAACTCCCTATGCCAAAGCAAACCCACGAAACAGGAGTGCGGGCGCTCAGCCAGTC
GGAGAGGCAGAATGCGCAAGGCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTACTAC
CGCAACCCTCGATCCAGTCCAATCTTAGACTGGAAATAAACTCCGTATGCTTAGACTAGGGATGA
ACTCCATATGCCTAAGTCAACCCACGAAATCAGCGATGCGGACGCTCAGCCGATCGGAGAG
Found at i:17435073 original size:180 final size:182
Alignment explanation
Indices: 17434843--17435267 Score: 461
Period size: 180 Copynumber: 2.3 Consensus size: 182
17434833 GTGTGCTGTC
* * * *
17434843 GATCCTACTACCGTAACCCTCGATC-CGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTA
1 GATCCTACTGCCGCAACCCTCG-TCTCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * * *
17434907 GAC-TAGGGATGAACTCCTATATGCCTAAGTCAACCTA-TGAAA-CATGCGTGCGGGCGCTCAGC
65 GACAT-GGAATGAACTCC-ATATGCCTAAGCCAACCCACT-AAATCA-GCGTCCGGGCGATCAAC
* * * * *
17434969 TGATCGGAGAGGCAGAATGCGTAAGCC-AGG-GGCCCGATCCCC-CTGCATGCTGTT
126 CGATCGGAGAGACAGAATGCGGAAGCCGAGGAGGCCCGATCCCCTCTACATGCTATT
* * * *
17435023 GATCCTGCTGCCGCAACCTTCGGTCT-GATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTA
1 GATCCTACTGCCGCAACCCTC-GTCTCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * *
17435087 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAATGAGGGTCCGGGTGATCAACCGAT
65 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACTAAATCAGCGTCCGGGCGATCAACCGAT
* * * * *
17435152 TGGAGATACAGAATGTGGGAGCCGAGGATCGGCCCGATCCCCTCTACGTGCTATT
130 CGGAGAGACAGAATGCGGAAGCCGAGGA--GGCCCGATCCCCTCTACATGCTATT
*
17435207 GATCCTACTGCCGCAACCCTCGTTTCGATCTAATCTTAGACTGGGAATGAACTCTGTATGC
1 GATCCTACTGCCGCAACCCTCGTCTCGATCTAATCTTAGACTGGGAATGAACTCTGTATGC
17435268 CTAAGTCAAC
Statistics
Matches: 201, Mismatches: 33, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
179 51 0.25
180 72 0.36
181 2 0.01
183 15 0.07
184 61 0.30
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (182 bp):
GATCCTACTGCCGCAACCCTCGTCTCGATCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAG
ACATGGAATGAACTCCATATGCCTAAGCCAACCCACTAAATCAGCGTCCGGGCGATCAACCGATC
GGAGAGACAGAATGCGGAAGCCGAGGAGGCCCGATCCCCTCTACATGCTATT
Found at i:17435086 original size:26 final size:26
Alignment explanation
Indices: 17435057--17435109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17435047 CTGATCTGAT
*
17435057 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17435083 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17435109 C
1 C
17435110 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17435432 original size:26 final size:26
Alignment explanation
Indices: 17435403--17435476 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
17435393 TCGATGTTAA
*
17435403 ACTGGGAATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
17435429 ACTGGGGATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
*
17435455 ACTGGGGATGAACTCCATATGC
1 ACTGGGGATGAACTCCGTATGC
17435477 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
ACTGGGGATGAACTCCGTATGCTTAG
Found at i:17435661 original size:26 final size:26
Alignment explanation
Indices: 17435632--17435684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17435622 CTGGTTTGAT
* *
17435632 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17435658 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17435684 C
1 C
17435685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17436888 original size:26 final size:26
Alignment explanation
Indices: 17436850--17436900 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17436840 CTGATCCAAT
17436850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17436876 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
17436901 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17437248 original size:159 final size:157
Alignment explanation
Indices: 17436875--17437249 Score: 369
Period size: 158 Copynumber: 2.4 Consensus size: 157
17436865 AACTCCGTAT
* * *
17436875 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCATACGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
* * * * *
17436940 CCGGCTGGAGAGGTCGAATGCGCAAGCTGGGGACCGACCCGGTCCCCCCTACATGCTGTAGATCC
65 CCGGCTAGAGAGGTAGAATGCGAAAGCCGGGGACCAACCCGGTCCCCCCTACATGCTGTAGATCC
* * * * *
17437005 TACTGCCGCAGCCCTCGGTCTAGTTCGA
130 CACTGCCACAACCCTCAGTCGAGTTCGA
* * * * * * * *
17437033 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACAAGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAG
* * * * * * * *
17437098 CC-GATCAGAGAGTTATAATGCGAAAGCCGGGGATCAACTCGGTCCCCCTCTGCGTGCTGCT-GG
65 CCGGCT-AGAGAGGTAGAATGCGAAAGCCGGGGACCAACCCGGTCCCCC-CTACATGCTG-TAGA
* *
17437161 TCCCACTGCCACAACCCTCAGTCCGA-TTTGG
127 TCCCACTGCCACAACCCTCAGT-CGAGTTCGA
* *
17437192 GCTTAGACAAGGAATGAACTACCTATGCCTAAGCCAACCCACGAAATGGGCTTGCGGG
1 GCTTAGACAAGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGG
17437250 CACTCAGTTG
Statistics
Matches: 172, Mismatches: 39, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.51
159 80 0.47
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGC
CGGCTAGAGAGGTAGAATGCGAAAGCCGGGGACCAACCCGGTCCCCCCTACATGCTGTAGATCCC
ACTGCCACAACCCTCAGTCGAGTTCGA
Found at i:17437380 original size:26 final size:26
Alignment explanation
Indices: 17437351--17437403 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17437341 CCGGTCTGAT
17437351 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
17437377 CTTAGACTGAGGATGAGCTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
17437403 C
1 C
17437404 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:17437750 original size:26 final size:26
Alignment explanation
Indices: 17437714--17437763 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17437704 GGCTCCAACT
17437714 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
17437740 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
17437764 TGCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:17438037 original size:158 final size:158
Alignment explanation
Indices: 17437739--17438038 Score: 329
Period size: 158 Copynumber: 1.9 Consensus size: 158
17437729 AACTCTGTAA
** * *
17437739 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGGAACGAGCGTCTGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCTGGACGCTCAG
* * * * * ** *
17437804 CCGATCGAAGAGGTAGAATGCACAAGTCGGGATCGGCCCGCTCCCCTTTTACATGCTGTTTGTCC
66 CCGACCGAAGAGGCAGAATACACAAGCCGGGATCGGCCCGATCCCCTCCTACATGCTGTTCGTCC
17437869 CGCTGCCACAACTCTCGGTTCGGCTGGG
131 CGCTGCCACAACTCTCGGTTCGGCTGGG
* * * *
17437897 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGTGGATGCTC
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTCTGGACGCTC
* * * * *
17437960 AGCTGACCGGAGAGGCAGAATACGCAAGCCGGGAATCGGCCCGATCCCC-CCTGCGTGCTG-TCG
64 AGCCGACCGAAGAGGCAGAATACACAAGCCGGG-ATCGGCCCGATCCCCTCCTACATGCTGTTCG
* *
17438023 ATCCTGCTGTCACAAC
128 -TCCCGCTGCCACAAC
17438039 CCTTGGTCTG
Statistics
Matches: 115, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.03
158 97 0.84
159 15 0.13
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCTGGACGCTCAG
CCGACCGAAGAGGCAGAATACACAAGCCGGGATCGGCCCGATCCCCTCCTACATGCTGTTCGTCC
CGCTGCCACAACTCTCGGTTCGGCTGGG
Found at i:17438563 original size:170 final size:156
Alignment explanation
Indices: 17438415--17438704 Score: 294
Period size: 158 Copynumber: 1.8 Consensus size: 156
17438405 CTGCTATCGC
* *
17438415 AACCCTCGGTCCAGTCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAA
1 AACCCTCGGTCCAGTCAGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
* * * * * **
17438480 CGAGCGTGCGGGCGCTCAGCTGATCGGAGAGGCAGAATGCGCAAGCCAGGCACCGACGCGGTCTG
66 CGAACGTGCGGGCACTCAGC-GATCGGAGAGGCAAAATGCGCAAGCCAGG-ACCGACCCGATCCC
* * *
17438545 CCTTGC-ATGCTGTCGATCCTGCTGCCAT
129 CCCTACGA-GCTATCGATCCTGCTGCCAT
** * * *
17438573 AACCCTCGGTCTGGTCAGATCTTAGACTGGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCAGTCAGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
17438638 TGAACGTGCAGGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCGGAGATCGACCCGGTCCC
66 CGAACGTGCGGGCACTCAGCGA-TCGGAGAGGCAAAATGCGCAAGCCAG-GACCGACCCGATCCC
17438703 CC
129 CC
17438705 TCTGTGTATT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.01
158 108 0.98
159 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (156 bp):
AACCCTCGGTCCAGTCAGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
CGAACGTGCGGGCACTCAGCGATCGGAGAGGCAAAATGCGCAAGCCAGGACCGACCCGATCCCCC
CTACGAGCTATCGATCCTGCTGCCAT
Found at i:17438941 original size:26 final size:26
Alignment explanation
Indices: 17438912--17438961 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17438902 ATCTGATCTC
*
17438912 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
17438938 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
17438962 CAAATTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:17439874 original size:26 final size:26
Alignment explanation
Indices: 17439830--17439882 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17439820 CCGGTCTGAT
17439830 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* * * *
17439856 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
17439882 C
1 C
17439883 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:17440233 original size:348 final size:347
Alignment explanation
Indices: 17439316--17440280 Score: 1048
Period size: 357 Copynumber: 2.7 Consensus size: 347
17439306 CTCCATATGC
** *
17439316 TTAGACATGGAATGAAC-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCGGTCAAT
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCACTCAAC
* * * ** * *
17439380 CGGCCGGAGAGGCAAAATGCACAAGCTGAGGACCGGTACGGTCCCCCCTGCGTGCTATCGATCCT
65 CAGCCAGAGAGGC-AAATACGTAAGCTGAGGATCGG-CCGGTCCCCCCTGCGTGCTATCGATCCT
* * * * *
17439445 CCTGTCACAACCCTCGATTCGGTCTGATCTTAGACTATGAATGAACTCCGTATGATTAGACTGGG
128 ACTGTCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT-GG
* *
17439510 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGATCGGAGAG
192 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAG
* * ** * *
17439575 GTCGACCAGAGAGGCATAATGTGCAAGTCGAGGATCAGCCCGATCCCTCTCTGCATGCTGCCGAT
257 GCCGACCAAAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCTCTCTGCATGCTGCCGAT
*
17439640 CCCACTACCACAACCCGCGGTCCAGCTGGGGC
322 CCCACT------ACCCGCGGTCCAGCTGGGGA
* * * * * *
17439672 TTAGACATGGAATGAACTCCCTATTCCTAACCCAACCCACAAAACGGGCGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* ** * *
17439737 AACCAGAGAGGCAAATTTGTGCAAG-TCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 AGCCAGAGAGGCAAATACGT--AAGCT-GAGGATCGG-CCGGTCCCCCCTGCGTGCTATCGATCC
* * * * * *
17439801 TATTATCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATAAACTCCATATGCTTAGACTTG
127 TACTGTCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TG
17439866 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGA
191 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGA
*
17439931 GGCC-AGCCAAAGAGGCATAATGCACAAGCCGAGGATCAGCCTAG-TACCC-CTCTGCATGCTGT
256 GGCCGA-CCAAAGAGGCATAATGCACAAGCCGAGGATCAGCC-AGAT-CCCTCTCTGCATGCTGC
** *
17439993 CGATCCCA-T-TGC-CGGTCTAGCTGGGGA
318 CGATCCCACTACCCGCGGTCCAGCTGGGGA
* * **
17440020 TTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAAGCACTCAACC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
* * * *
17440085 AGCTAGAGAGGCAGAATACGTAAGCTGAGGATCAGCCTGGTCCCCCCCTACGTGCTA-CTGGTCC
66 AGCCAGAGAGGCA-AATACGTAAGCTGAGGATCGGCC-GGT-CCCCCCTGCGTGCTATC-GATCC
* * * * * * *
17440149 TGCTGCCATAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAAGCTTAGACATG
127 TACTGTCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TG
* * * * * * * *
17440214 GAATGAACTCCGTATGCCTAGGCCAACCCACGAAATGAACGTGCAGGCACTCAGTCGGTCGAAGA
191 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGA
17440279 GG
256 GG
17440281 AAAAGTGCGC
Statistics
Matches: 510, Mismatches: 86, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
346 2 0.00
347 14 0.03
348 207 0.41
349 6 0.01
355 4 0.01
356 38 0.07
357 234 0.46
358 5 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (347 bp):
TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACC
AGCCAGAGAGGCAAATACGTAAGCTGAGGATCGGCCGGTCCCCCCTGCGTGCTATCGATCCTACT
GTCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCG
ACCAAAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCTCTCTGCATGCTGCCGATCCCA
CTACCCGCGGTCCAGCTGGGGA
Found at i:17440708 original size:26 final size:26
Alignment explanation
Indices: 17440679--17440731 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17440669 CTGGTCTGAT
17440679 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACATC-GTATG
* *
17440705 CTTAGATTGGGGATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
17440731 C
1 C
17440732 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:17442033 original size:26 final size:25
Alignment explanation
Indices: 17441983--17442034 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17441973 CTGGTCTGAT
*
17441983 CTTAGACTGGAATGAACTCTATATG
1 CTTAGACTGGAATGAACTCCATATG
* *
17442008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCATATG
17442034 C
1 C
17442035 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:17443087 original size:26 final size:26
Alignment explanation
Indices: 17443036--17443088 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443026 CTGATTCTAT
*
17443036 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
17443062 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
17443088 C
1 C
17443089 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17443275 original size:26 final size:26
Alignment explanation
Indices: 17443246--17443298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443236 TCGGTCTGAT
*
17443246 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17443272 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17443298 C
1 C
17443299 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17443816 original size:184 final size:184
Alignment explanation
Indices: 17443571--17444046 Score: 465
Period size: 184 Copynumber: 2.5 Consensus size: 184
17443561 CTGCTGTTGT
* * * * *
17443571 AACCCTCAGTCCGATCCAATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
1 AACCCTCAGTCCGATCCAATCTTAGACTGAGAATGAACCCCATATGCATAGACACGGAATGAACT
* *
17443636 CCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGG-GCTCAGTCGGTC-GAAGAGGCAGAA
66 CCATATGCCTAAGCCAACCCACGAAATGAGCATGCG-GGTGCTCAGTCGGCCGGAA-AGGCAGAA
* *
17443699 TGCGCAAGCCAGGGACCAGCCCAATCCCTCC-TGTGTGCTGTTAATCCTACTGCCGC
129 TGCACAAGCCAGGGACCAGCCCAATCCC-CCTTGTGTGCTGTCAATCCTACTGCCGC
* * * *
17443755 AACCCTC-GATCCTATCCAATCTTAGGCTGAGAATGAACCCCGTATGCATAGATACGGAATGAAC
1 AACCCTCAG-TCCGATCCAATCTTAGACTGAGAATGAACCCCATATGCATAGACACGGAATGAAC
* * *
17443819 TCCATATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAGTCTGCCGGAAAGGCAGAAT
65 TCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGTCGGCCGGAAAGGCAGAAT
* * * * ** *
17443884 GCACAAGTCGGGGATCGGCCCGGTCCCCCTTGTGTGCTGTCGATCCTACTGTTGGTCCTGCTGCT
130 GCACAAGCCAGGGACCAGCCCAATCCCCCTTGTGTGCTGTCAATCCTAC---T-G--C--C-G--
17443949 CC
184 -C
* * * * * ** * *
17443951 AACCCTCGGTCCGATCCAATCCTAGATTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT
1 AACCCTCAGTCCGATCCAATCTTAGACTGAGAATGAACCCCATATGCATAGACACGGAATGAACT
* * *
17444016 CCGTATGCCTAAGCCAACCCATGACATGAGC
66 CCATATGCCTAAGCCAACCCACGAAATGAGC
17444047 CAGTCGAAGA
Statistics
Matches: 239, Mismatches: 36, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
183 5 0.02
184 143 0.60
185 3 0.01
187 1 0.00
188 1 0.00
190 1 0.00
192 1 0.00
193 1 0.00
196 82 0.34
197 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (184 bp):
AACCCTCAGTCCGATCCAATCTTAGACTGAGAATGAACCCCATATGCATAGACACGGAATGAACT
CCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGTCGGCCGGAAAGGCAGAATG
CACAAGCCAGGGACCAGCCCAATCCCCCTTGTGTGCTGTCAATCCTACTGCCGC
Found at i:17444486 original size:26 final size:26
Alignment explanation
Indices: 17444457--17444509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17444447 CCGATCCGAT
17444457 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
17444483 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
17444509 C
1 C
17444510 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:17445642 original size:157 final size:159
Alignment explanation
Indices: 17445329--17445723 Score: 361
Period size: 158 Copynumber: 2.5 Consensus size: 159
17445319 TATGTACTAT
* ** * * * * *
17445329 CGATCTTGCTACTGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATCAACTCCCTATGCCT
1 CGATCATGCTACCACAACCCTCGGTCCAAG-CTGAGCTTAGACTAGGAATGAACTCCCTATGCCT
* * * * * * * * * * *
17445393 AAGTCAA-CCATGAAATGAGCGTTCGGGCACTGAGTCGGTCGGAGAGACATAATGCGCAAGCTGG
65 AAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAAAGACAGAATGCGCAAGCCGA
* * * *
17445457 GGATTGGCCCGATCCCCCTCTGCGTGCTGT
130 GGATCGACCCGATCCCCCTCTGCATGCTGC
* * * *
17445487 CGGTCATGCTGCCACAACCCTCGG-CTC-GGCTGGGCTTAGAC-ATGGAATGAACTCCCTATGCC
1 CGATCATGCTACCACAACCCTCGGTC-CAAGCTGAGCTTAGACTA-GGAATGAACTCCCTATGCC
* * * *
17445549 TAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGTCGAAAAGGCAGAATGCGCAAGCCG
64 TAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAAAGACAGAATGCGCAAGCCG
* *
17445614 AGGATCGACCCGGTCCCTC-CTGCATGCTGC
129 AGGATCGACCCGATCCCCCTCTGCATGCTGC
* * * * * * *
17445644 CGATCTTGCTATCGCAACCCTCTGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
1 CGATCATGCTACCACAACCCTCGGTCCAAGCTGAGCTTAGACTAGGAATGAACTCCCTATGCCTA
17445709 AGTCAACCCACGAAA
66 AGTCAACCCACGAAA
17445724 TGAGTGTGTG
Statistics
Matches: 188, Mismatches: 43, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
157 63 0.34
158 124 0.66
159 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CGATCATGCTACCACAACCCTCGGTCCAAGCTGAGCTTAGACTAGGAATGAACTCCCTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAAAGACAGAATGCGCAAGCCGAG
GATCGACCCGATCCCCCTCTGCATGCTGC
Found at i:17446059 original size:26 final size:26
Alignment explanation
Indices: 17446020--17446072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17446010 CGAGTCCGAT
17446020 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
17446046 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
17446072 C
1 C
17446073 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:17446551 original size:26 final size:26
Alignment explanation
Indices: 17446521--17446573 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17446511 CTGATCTGAT
*
17446521 CTTAGACT-GGGAATGAAGTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
17446547 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
17446573 C
1 C
17446574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:17447089 original size:26 final size:26
Alignment explanation
Indices: 17447053--17447105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17447043 CTGATTCGAT
*
17447053 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
17447079 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17447105 C
1 C
17447106 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17447437 original size:26 final size:26
Alignment explanation
Indices: 17447395--17447473 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
17447385 CTGGTCTGAT
17447395 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAGTGAACTCCGTATG
*
17447421 CTTAGACTAGGG-TTGAACTCCGTATG
1 CTTAGACT-GGGAGTGAACTCCGTATG
* * * *
17447447 CTTAGATTGGCAATGAACTCTGTATG
1 CTTAGACTGGGAGTGAACTCCGTATG
17447473 C
1 C
17447474 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.04
26 41 0.89
27 3 0.07
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCGTATG
Found at i:17447764 original size:369 final size:367
Alignment explanation
Indices: 17447053--17447816 Score: 949
Period size: 369 Copynumber: 2.1 Consensus size: 367
17447043 CTGATTCGAT
**
17447053 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCC
1 CTTAGACTGGG-ATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATGCCTAAGTCAACCC
* * * * * *
17447118 ATGAAACGAGCATTCGGGCACTGAGCGGCAGGAGAGGCATAATCCACAAGCTGAGGATTGGCTTG
65 ACGAAACGAGCATTCGGGCACTGAGCGACAGGAGAGGCATAATACACAAGCAGAGGATCGGCTCG
* *
17447183 GTCCCCCTCTACGTGCTACCGGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
130 GTCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
* *
17447248 AATGAACTCCCTACGCCTAAGCCAACCAATGAAATAGGCGTGCGGGCACTCAGTCTGCCAGAAAG
195 AATGAACTCCCTACGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCACTCAGTCTGCCAGAAAG
* * * * * ** * ** * *
17447313 GTAGAATCCGTAAGTTGGGGATCGGCTTGGTCCCCTCTGTGTGCAGCTGATCCTACTGTCGCAAC
260 GCAAAATCCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCAGCTGATCCTACTGCCACAAC
* * * *
17447378 CTTCGGTCTGGTCTGATCTTAGACTGGGAGTGAACTCCGTATG
325 CCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATG
* * * *
17447421 CTTAGACTAGGGTTGAACTCCGTATGCTTAGATTGGCAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACT-GGGATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATGCCTAAGTCAACCC
* * * *
17447486 ACGAAACGAGCATTCTGGCGCTGAGCTGACCGGAGAGGCATAATACGCAAGCCAG-GGATCGGCT
65 ACGAAACGAGCATTCGGGCACTGAGC-GACAGGAGAGGCATAATACACAAG-CAGAGGATCGGCT
* * ** *
17447550 CGGTCCCCTTCTACGTGCTACCGATCCCGCTGCCATAACCCTTTGTCCGGCTGGGGCTTAGACAT
128 CGGTCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
* * * * *
17447615 GGAATGAACTCCCTATGCCTCAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG-CTGGCCGGA
193 GGAATGAACTCCCTACGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCACTCAGTCT-GCCAGA
* * * *
17447679 GAGGCAAAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTG-TCGATCCTGCTGCCA
257 AAGGCAAAATCCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCAGCT-GATCCTACTGCCA
* *
17447743 CAACCCTCGGTTTGATCTGATCTTAGACTAGGAATGAACTCTGTATG
321 CAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATG
* * *
17447790 CATAGGCTGGGGATGAACACCGTATGC
1 CTTAGACT-GGGATGAACTCCGTATGC
17447817 CTAAGTCAAT
Statistics
Matches: 334, Mismatches: 57, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
368 81 0.24
369 251 0.75
370 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (367 bp):
CTTAGACTGGGATGAACTCCGTATGCTTAGACTGGCAATGAACACCGTATGCCTAAGTCAACCCA
CGAAACGAGCATTCGGGCACTGAGCGACAGGAGAGGCATAATACACAAGCAGAGGATCGGCTCGG
TCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTACGCCTAAGCCAACCAACGAAACAGGCGTGCGGGCACTCAGTCTGCCAGAAAGG
CAAAATCCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCAGCTGATCCTACTGCCACAACC
CTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:17448341 original size:26 final size:26
Alignment explanation
Indices: 17448303--17448355 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17448293 CCGGTCCGAT
*
17448303 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17448329 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17448355 C
1 C
17448356 CTAAGCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17448527 original size:26 final size:26
Alignment explanation
Indices: 17448498--17448550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17448488 CCGAGCTTAT
*
17448498 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
17448524 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
17448550 C
1 C
17448551 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:17449037 original size:158 final size:156
Alignment explanation
Indices: 17448524--17449054 Score: 552
Period size: 158 Copynumber: 3.4 Consensus size: 156
17448514 ACTCCGTATG
* * *
17448524 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * *
17448589 CGTCCGGAGAGG-AAGAATGCATAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCC
66 CGGCCGGAGAGGCAA-AATGCACAAGCCGGGGATCGGACCAGTCCCCCCTGCATGCTGTCGATCC
*
17448653 TGCTGCTACAACCCTTGGTCCGGTCCAAT
130 TGCTGC-ACAACCCTCGGTCC-GTCCAAT
* * * * * *
17448682 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
17448746 CCGGTCGGAGAGGCATAATGCACAAGTCGGGGATTC-GACCCA-ACCCCCCTTTGCATGCTGTCG
65 CCGGCCGGAGAGGCAAAATGCACAAGCCGGGGA-TCGGA-CCAGTCCCCCC--TGCATGCTGTCG
* * ***
17448809 ATCTTGCTGCCACAACCATCGGTCCG-CCTGGGG
126 ATCCTGCTG-CACAACCCTCGGTCCGTCC--AAT
* * * * ** *
17448842 CATAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCACGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * *
17448907 CGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGACCAGTCCCCCCTGCATGCTGTCGATCCT
* * **
17448972 GCTGTCGCAACCCTCAGTTTGATCCAAT
131 GCTG-CACAACCCTCGGTCCG-TCCAAT
* *
17449000 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCG
17449055 AGCGCTCACC
Statistics
Matches: 298, Mismatches: 60, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 163 0.55
159 11 0.04
160 120 0.40
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGACCAGTCCCCCCTGCATGCTGTCGATCCT
GCTGCACAACCCTCGGTCCGTCCAAT
Found at i:17449075 original size:158 final size:156
Alignment explanation
Indices: 17448524--17449134 Score: 547
Period size: 158 Copynumber: 3.9 Consensus size: 156
17448514 ACTCCGTATG
* * * * *
17448524 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
*
17448589 C-GTCCGGAGAGG-AAGAATGCATAAGCCGGGGATCGGCCC-AGTCCCCCCTGCATGCTGTCGAT
66 CGGT-CGGAGAGGCAA-AATGCACAAGCCGGGGATCGGCCCGA-TCCCCCCTGCATGCTGTCGAT
*
17448651 CCTGCTGCTACAACCCTTGGTCCGGTCCAAT
128 CCTGCTGC-ACAACCCTCGGTCC-GTCCAAT
* * * *
17448682 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AG-GCATTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGC--TC
* * * *
17448744 AGCCGGTCGGAGAGGCATAATGCACAAGTCGGGGATTCGACCC-AACCCCCCTTTGCATGCTGTC
63 AGCCGGTCGGAGAGGCAAAATGCACAAGCCGGGGA-TCGGCCCGATCCCCCC--TGCATGCTGTC
* * ***
17448808 GATCTTGCTGCCACAACCATCGGTCCG-CCTGGGG
125 GATCCTGCTG-CACAACCCTCGGTCCGTCC--AAT
* * * * ** *
17448842 CATAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCACGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
* * * *
17448907 CGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCT
* * **
17448972 GCTGTCGCAACCCTCAGTTTGATCCAAT
131 GCTG-CACAACCCTCGGTCCG-TCCAAT
* * *
17449000 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGAGCGCTCAC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * * ** * * * * * **
17449064 CCGATCAGAGAGGCAGAATACGTAAGTCGGGGATCGACCCGATCCCCCTTACGTGCTACCGATCC
65 CCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
17449129 TGCTGC
130 TGCTGC
17449135 TGGTCTTGCT
Statistics
Matches: 361, Mismatches: 74, Indels: 37
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 219 0.61
159 16 0.04
160 116 0.32
161 3 0.01
162 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCT
GCTGCACAACCCTCGGTCCGTCCAAT
Found at i:17449208 original size:26 final size:26
Alignment explanation
Indices: 17449170--17449222 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17449160 CTGATCTGAT
17449170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17449196 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17449222 C
1 C
17449223 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17449551 original size:159 final size:158
Alignment explanation
Indices: 17449195--17449656 Score: 414
Period size: 159 Copynumber: 2.9 Consensus size: 158
17449185 AACTCCGTAT
* * * * ** * *
17449195 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGA-ACGTGCAGGCGCTCA
1 GCTTGGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGAGA-GTGTAGGCGCTCA
* * * * * * * * * * *
17449259 GCCGACCGGAGTGGTAGAATGCGTAAGTCGAGGA-CTGGC-CCAACCCCTCCTACATGCTGTCAA
65 GCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCTCGATCCCC-CCTGCGTGCTATCGA
** * * *
17449322 TCCTACTGCCTCAACCCTCAGTCTGGTCT-GA
128 TCCCGCTGCCACAACCCTCAGTCT-GACTGGG
* * * * ** * * * *
17449353 TCTTAGAC-TAGGAATGAACTCCGTATGTCTAAGTCAACCCATGAAATGAGCGT-TCAGGTGCTG
1 GCTTGGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGAGAGTGT-AGGCGCTC
* * * * *
17449416 AGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGG
64 AGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCC-CTGCGTGCTATCGA
17449481 TCCCGCTGCCACAACCCTCAGTCTGACTGGG
128 TCCCGCTGCCACAACCCTCAGTCTGACTGGG
* * *
17449512 GCTTGGACATGGAATGAGCTCCCTATGCCTAAACCAACCCATGAAACGGGAGTGTGGGCGCTCAG
1 GCTTGGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGAGAGTGTAGGCGCTCAG
*
17449577 CCAACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCC
66 CCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCC
* *
17449642 TGCTGCCGCAACCCT
131 CGCTGCCACAACCCT
17449657 TCGACTGATC
Statistics
Matches: 247, Mismatches: 48, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 113 0.46
159 131 0.53
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTGGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGAGAGTGTAGGCGCTCAG
CCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCAGTCTGACTGGG
Found at i:17449675 original size:671 final size:671
Alignment explanation
Indices: 17448329--17449697 Score: 1730
Period size: 672 Copynumber: 2.0 Consensus size: 671
17448319 ACTTCGTATG
* * * *
17448329 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCCACCCATGAAACGAGGGTGCGAGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGAGCGCTCAC
* * * * **
17448393 TCGATCGGAGAGGCAGAATGCCAAGTCAAAGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
65 CCGATCAGAGAGGCAGAATACCAAGTCAAAGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
* *
17448458 GCTGCTAGTCCTGCTCCCGCAACCCTCGATCCGAGCTTATCTTAGACTAGGAATGAACTCCGTAT
130 GCTGCTAGTCCTGCTACCGCAACCCTCGATCCGAGCTGATCTTAGACTAGGAATGAACTCCGTAT
* ** * * *
17448523 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAACCGAGCGTGCGGGCACTCAA
195 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACGAACGTGCAGGCACTCAA
* * * * *
17448588 CCGTCCGGAGAGGAAGAATGCATAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCC
260 CCGACCGGAGAGGAAGAATGCATAAGCCGAGGATCGGCCCAGACCCCCCTACATGCTGTCAATCC
* ** * *
17448653 TGCTGCTACAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
325 TACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* ** *
17448718 CCCACGAAACGAGCGTGCAGGCATTGAGCCGGTCGGAGAGGCATAATGCACAAGTCGGGGATTCG
390 CCCACGAAACGAGCGTGCAGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATTCG
* ** * *
17448783 ACCCAACCCCCCTTTGCATGCTGTCGATCTTGCTGCCACAACCATCGGTCCGCCTGGGGCATAGA
455 ACCCAACCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCATCAGTCCGACTGGGGCATAGA
* * **
17448848 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCACGCGGGCGCTCAGCCGGCCG
520 CATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCACGCGGGCGCTCAGCCAACCG
* * * *
17448913 GAGAGGCAAAATGCACAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTC
585 GAGAGGCAAAATGCACAAGCCGAGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCC
**
17448978 GCAACCCTCAGTTTGATCCAAT
650 GCAACCCTCAGACTGATCCAAT
*
17449000 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGAGCGCTCACC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGAGCGCTCACC
* *** *
17449065 CGATCAGAGAGGCAGAATACGTAAGTCGGGGATCGACCCGATCCCCCTTACGTGCTACCGATCCT
66 CGATCAGAGAGGCAGAATAC-CAAGTCAAAGATCGACCCGATCCCCCCTACGTGCTACCGATCCT
* * * * * *
17449130 GCTGCTGGTCTTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 GCTGCTAGTCCTGCTACCGCAACCCTCGATCCGAGCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
17449195 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGCAGGCGCTCAG
195 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACGAACGTGCAGGCACTCAA
* * * *
17449260 CCGACCGGAGTGGTAGAATGCGTAAGTCGAGGA-CTGGCCCA-ACCCCTCCTACATGCTGTCAAT
260 CCGACCGGAGAGGAAGAATGCATAAGCCGAGGATC-GGCCCAGACCCC-CCTACATGCTGTCAAT
* ** *
17449323 CCTACTGCCT-CAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGTCTAAGT
323 CCTACTG-CTACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * ** *
17449387 CAACCCATGAAATGAGCGTTCAGGTGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA-
387 CAACCCACGAAACGAGCGTGCAGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGAT
* * * * * * * * *
17449451 TCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCTGACTGGGGCTT
452 TCGACCCAACCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCATCAGTCCGACTGGGGCAT
* * * *
17449516 GGACATGGAATGAGCTCCCTATGCCTAAACCAACCCATGAAACGGG-AGTGTGGGCGCTCAGCCA
517 AGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCA-CGCGGGCGCTCAGCCA
* **
17449580 ACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGG-CTCGATCCCCCCTGCGTGCTATCGATCCTG
581 ACCGGAGAGGCAAAATGCACAAGCCGAGGATCGGTC-CGATCCCCCCTGCGTGCTATCGATCCTG
**
17449644 CTGCCGCAACCCTTC-GACTGATCTGAT
645 CTGCCGCAACCC-TCAGACTGATCCAAT
*
17449671 CTTAGACT-GGAAATGAACTCTGTATGC
1 CTTAGACTAGG-AATGAACTCCGTATGC
17449698 TTAGACTGGG
Statistics
Matches: 593, Mismatches: 96, Indels: 18
0.84 0.14 0.03
Matches are distributed among these distances:
670 4 0.01
671 283 0.48
672 304 0.51
673 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (671 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGAGCGCTCACC
CGATCAGAGAGGCAGAATACCAAGTCAAAGATCGACCCGATCCCCCCTACGTGCTACCGATCCTG
CTGCTAGTCCTGCTACCGCAACCCTCGATCCGAGCTGATCTTAGACTAGGAATGAACTCCGTATG
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACAAAACGAACGTGCAGGCACTCAAC
CGACCGGAGAGGAAGAATGCATAAGCCGAGGATCGGCCCAGACCCCCCTACATGCTGTCAATCCT
ACTGCTACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCAGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATTCGA
CCCAACCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCATCAGTCCGACTGGGGCATAGAC
ATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCACGCGGGCGCTCAGCCAACCGG
AGAGGCAAAATGCACAAGCCGAGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCG
CAACCCTCAGACTGATCCAAT
Found at i:17449700 original size:26 final size:26
Alignment explanation
Indices: 17449671--17449723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17449661 CTGATCTGAT
*
17449671 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATAAACTCTGTATG
**
17449697 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGAAATAAACTCTGTATG
17449723 C
1 C
17449724 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCTGTATG
Found at i:17450720 original size:158 final size:156
Alignment explanation
Indices: 17450417--17450698 Score: 390
Period size: 158 Copynumber: 1.8 Consensus size: 156
17450407 GAACTCCATA
* * * * *
17450417 TGCTTAGACATGGTATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCA
1 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * *
17450482 GCCGGCCGGAGAGGCAGAATGCGAAGTCAGGGATCGACCCGATCCCCCTTTGCATTTTGTTAGCC
66 ACCGGCCGGAGAGGCAGAATGCGAAGCCAGGGATCGACCCGATCCCCCTTTGC--TGTGCTAGCC
*
17450547 CCGCTGCCACAACCCTCGGTCTGGCTGG
129 CCGCTACCACAACCCTCGGTCTGGCTGG
*
17450575 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCA
1 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* *
17450640 ACTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC-AGCCCGATCCCCC-TTGC-GTGCTA
66 ACCGGCCGGAGAGGCAGAATGCG-AAGCCAGGGATCGA-CCCGATCCCCCTTTGCTGTGCTA
17450699 CCGATCCTGC
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
155 4 0.04
158 84 0.76
159 22 0.20
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
ACCGGCCGGAGAGGCAGAATGCGAAGCCAGGGATCGACCCGATCCCCCTTTGCTGTGCTAGCCCC
GCTACCACAACCCTCGGTCTGGCTGG
Found at i:17450761 original size:158 final size:156
Alignment explanation
Indices: 17450416--17450761 Score: 371
Period size: 158 Copynumber: 2.2 Consensus size: 156
17450406 TGAACTCCAT
* * * *
17450416 ATGCTTAGACATGGTATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
* * * *
17450481 AGCCGGCCGGAGAGGCAGAATGCGAAGTCAGGGATCGACCCGATCCCCCTTTGCATTTTGTTAGC
66 AACCGGCCGGAGAGGCAGAATGCGAAGCCAGGGATCGACCCGATCCCCCTTTGC--TGTGCTAGC
* * *
17450546 CCCGCTGCCACAACCCTCGGTCTGGCTG
129 CCCGCTACCACAACCCTCGGTCCGACTG
* * *
17450574 GTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
* *
17450639 AACTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC-AGCCCGATCCCCC-TTGC-GTGCTA-C
66 AACCGGCCGGAGAGGCAGAATGCG-AAGCCAGGGATCGA-CCCGATCCCCCTTTGCTGTGCTAGC
** * *
17450700 CGATCCTGCTACCGTAACCCTTGGTCCGATTCG
129 C---CC-GCTACCACAACCCTCGGTCCGACT-G
*
17450733 AT-CTTAGAC-TGGGAATGAACTTCGTATGC
1 ATGCTTAGACAT-GGAATGAACTCCGTATGC
17450762 TTAGACTAGA
Statistics
Matches: 157, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
154 2 0.01
155 4 0.03
157 3 0.02
158 124 0.79
159 24 0.15
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
AACCGGCCGGAGAGGCAGAATGCGAAGCCAGGGATCGACCCGATCCCCCTTTGCTGTGCTAGCCC
CGCTACCACAACCCTCGGTCCGACTG
Found at i:17450975 original size:26 final size:26
Alignment explanation
Indices: 17450946--17450997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17450936 CGGTCTGATT
*
17450946 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
17450972 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
17450998 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:17451323 original size:26 final size:26
Alignment explanation
Indices: 17451287--17451339 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451277 TCCATTCGAT
17451287 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
17451313 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17451339 C
1 C
17451340 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17451525 original size:26 final size:26
Alignment explanation
Indices: 17451496--17451548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451486 TCGGTCCGAT
*
17451496 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17451522 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17451548 C
1 C
17451549 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17451942 original size:159 final size:157
Alignment explanation
Indices: 17451521--17451969 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 157
17451511 AACTTCGTAT
*
17451521 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTTCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGTTCAG
* * * * * *
17451586 CCT-ATC-GAGAGGCAAAATGTGCAAGTCAGGGACCAACCCGGTCCCCCCTACGTGCT-ATTGAT
66 -CTGATCGGAGAGGCAAAAT-CGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGGAT
* * *
17451648 CCTACCACCGTAACCCTCGGTTCGCTCTGA
129 CCTACCACCG-AACCCTCAGTCCGCTCGGA
* * * *
17451678 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGTTCA
* * * * *
17451742 GCCGACCGAAGAGGCATAATCTGGAAGCCGAGGG-TCAGCCCGGTCCCCCTCTACGTGCTGCTGG
65 GCTGATCGGAGAGGCAAAATC-GCAAGCC-AGGGATCAGCCCGGTCCCCC-CTACGTGCTGCTGG
* *
17451806 TCTCGCTACCA-C-AACCCTCAGTCCGGCT-GGG
127 -ATC-CTACCACCGAACCCTCAGTCC-GCTCGGA
* * *
17451837 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTTCGGGCGTTCA
* * * * * * *
17451901 GCTGGTCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCACCCTGCGTGCTGC-CGAT
65 GCTGATCGGAGAGGCAAAAT-CGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGGAT
17451965 CCTAC
129 CCTAC
17451970 TGCCGTAACC
Statistics
Matches: 238, Mismatches: 40, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
155 4 0.02
156 4 0.02
157 61 0.26
158 43 0.18
159 110 0.46
160 7 0.03
161 3 0.01
162 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGTTCAG
CTGATCGGAGAGGCAAAATCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGGATCC
TACCACCGAACCCTCAGTCCGCTCGGA
Found at i:17452046 original size:26 final size:26
Alignment explanation
Indices: 17451998--17452048 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451988 GGTCTGATCC
*
17451998 TAGACTGGGAATGAACTATGTATGCA
1 TAGACTGGGAATGAACTACGTATGCA
* *
17452024 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTACGTATGC
17452049 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTATGCA
Found at i:17452335 original size:356 final size:356
Alignment explanation
Indices: 17451742--17452430 Score: 897
Period size: 356 Copynumber: 1.9 Consensus size: 356
17451732 CGGGCGTTGA
** * * *
17451742 GCCGACCGAAGAGGCATAATCTGGAAGCCGAGGGTCAGCCCGGTCCCCCTCTACGTGCTGCTGGT
1 GCCGACCGAAGAGGCATAATCACGAAGCCGAGGGTCAGCCCGATCCCCCTCTACGTGCTGCCGAT
* * *
17451807 CTCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
66 CTCGCTACCACAACCCTCAGTCCGGCTGGGGCTCAGACATGGAATAAACTCCCTATGCCTAAGCA
* * * *
17451872 AACCCACGAAACAGGCGTGCGGGCGTTCAGCTGGTCGGAGAGGCAGAATACGCAAGCCAGGGATC
131 AACCCACGAAACAGGCGTCCGGGCGTTCAGCCGATCGGAAAGGCAGAATACGCAAGCCAGGGATC
* * * *
17451937 GGCCCGATCCACCCTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGATTCGGTCTGATCCTAGA
196 GACCCGATCCACCCTACGTGCTGCCAATCCTACTGCCGTAACCCTCGATTCGGTCTGATCCTACA
* * *
17452002 CTGGGAATGAACTATGTATGCATAG-ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
261 CTGGGAATGAACTATGTATGCATAGAAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
17452066 ACAAGCGTGTGGGGGCTAACCCGATCGAAGAG
325 ACAAGCGTGTGGGGGCTAACCCGATCGAAGAG
*
17452098 GCCGACCGGAGAGGCATAATACACGAA-CCG-GGGATCAGCCCGATCCCCCTCTACGTGCTGCCG
1 GCCGACCGAAGAGGCATAAT-CACGAAGCCGAGGG-TCAGCCCGATCCCCCTCTACGTGCTGCCG
* * * * * *
17452161 ATC-CTGCTGCCATAATCCTCGGTCCGGCTGGGGCTCAGACATGGAATAAACTTCGTATGCCTAA
64 ATCTC-GCTACCACAACCCTCAGTCCGGCTGGGGCTCAGACATGGAATAAACTCCCTATGCCTAA
* * *
17452225 GCAAACCCATGAAAC-GAGCGTCCGGGC-TCTCAGCCGATCGGAAAGGTAGAATGCGCAAGCC-G
128 GCAAACCCACGAAACAG-GCGTCCGGGCGT-TCAGCCGATCGGAAAGGCAGAATACGCAAGCCAG
* * * * * * *
17452287 AGGATTGACCCGGTCCCCCCTACGTGCTGTCAATCCTACTGTCGTAACCCTTGGTTCGGTCTGAT
191 -GGATCGACCCGATCCACCCTACGTGCTGCCAATCCTACTGCCGTAACCCTCGATTCGGTCTGAT
* * * *
17452352 CTTACTCTGGGAATGAACTCTGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCC
255 CCTACACTGGGAATGAACTATGTATGCATAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCC
*
17452417 ATGAAACAGGCGTG
320 ATGAAACAAGCGTG
17452431 CGAGCGCTCA
Statistics
Matches: 285, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
355 7 0.02
356 272 0.95
357 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (356 bp):
GCCGACCGAAGAGGCATAATCACGAAGCCGAGGGTCAGCCCGATCCCCCTCTACGTGCTGCCGAT
CTCGCTACCACAACCCTCAGTCCGGCTGGGGCTCAGACATGGAATAAACTCCCTATGCCTAAGCA
AACCCACGAAACAGGCGTCCGGGCGTTCAGCCGATCGGAAAGGCAGAATACGCAAGCCAGGGATC
GACCCGATCCACCCTACGTGCTGCCAATCCTACTGCCGTAACCCTCGATTCGGTCTGATCCTACA
CTGGGAATGAACTATGTATGCATAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CAAGCGTGTGGGGGCTAACCCGATCGAAGAG
Found at i:17452672 original size:159 final size:158
Alignment explanation
Indices: 17452387--17452880 Score: 401
Period size: 159 Copynumber: 3.1 Consensus size: 158
17452377 GCTTAGAAAT
* * ** * *
17452387 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGGCGTGC-GAGCGCTCAATCGGTCGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGA-CGCTCAGCCGGCCAA
* * ** * * * * **
17452450 AGAGGCAGAATGCGTAAGTCGGGGATC-GACCCGGTCCCCCCTTGCTTGCTGTC-AGTCTTGCTG
64 AGAGGCAGAATGCGCAACTCGGGGATCAG-CCCAATCCCCCC-TACGTGCTGCCGA-CCCCGCTG
* *
17452513 CTGCAACCCTTAGTCCGGTCTGATCTTAGACTG
126 CCGCAACCCTTAGTCCGATCTGATCTTAGACTG
* * * * * ***
17452546 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGTTGAGCCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGGCCAAAG
* ** * *
17452611 AGGCATAATGCGCAAGC-CGGGGATTGGCTCAATCCCCCTCTACGTGCTGCCGACCCCGCTGCCA
66 AGGCAGAATGCGCAA-CTCGGGGATCAGCCCAATCCCCC-CTACGTGCTGCCGACCCCGCTGCCG
* * *
17452675 CAACCCTCAGTCC-AACTGGGTCTTAGACAT-
129 CAACCCTTAGTCCGATCT-GATCTTAGAC-TG
* * * * *
17452705 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGACGCTCAGTCGGCCAAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGGCCAAAG
* * * * * * *
17452770 AGGTAGAATGCGCAACTCGGGGATCAGCCCAATCCCCCCTGCGTGCTGTCGATCCTGCTACCGTA
66 AGGCAGAATGCGCAACTCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCGACCCCGCTGCCGCA
* **
17452835 ACCC-TCGATCCGATCAAATCTTAGACTG
131 ACCCTTAG-TCCGATCTGATCTTAGACTG
17452863 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
17452881 TTAGACTAGG
Statistics
Matches: 260, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 55 0.21
159 197 0.76
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGGCCAAAG
AGGCAGAATGCGCAACTCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCGACCCCGCTGCCGCA
ACCCTTAGTCCGATCTGATCTTAGACTG
Found at i:17452883 original size:26 final size:26
Alignment explanation
Indices: 17452854--17452906 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17452844 CCGATCAAAT
*
17452854 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
17452880 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
17452906 C
1 C
17452907 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:17453907 original size:158 final size:158
Alignment explanation
Indices: 17453604--17453897 Score: 392
Period size: 158 Copynumber: 1.9 Consensus size: 158
17453594 AACTCCGTAT
* *
17453604 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGACCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCAG
* * * * * * * * * *
17453669 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTCAGTCCCCCTCTGCATGCTTCGATCC
66 CCAGCAGAAGAGCCAGAATGCCCAAGCTAGGGATCGGCTCAGTCCCCCTCTACATGCTCCGATCC
*
17453734 CGTTGCCACAACCCTCAGTACGGTTGGG
131 CATTGCCACAACCCTCAGTACGGTTGGG
* ***
17453762 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCAG
* *
17453827 CCAGCAGAAGAGCCAGAATGCCCAAGCTAGGGATCGGCTCGGTCCCCC-CTACGTGCTGCCGATC
66 CCAGCAGAAGAGCCAGAATGCCCAAGCTAGGGATCGGCTCAGTCCCCCTCTACATGCT-CCGATC
*
17453891 CTATTGC
130 CCATTGC
17453898 TGTAACCCTC
Statistics
Matches: 115, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
157 7 0.06
158 108 0.94
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGGGCGCTCAG
CCAGCAGAAGAGCCAGAATGCCCAAGCTAGGGATCGGCTCAGTCCCCCTCTACATGCTCCGATCC
CATTGCCACAACCCTCAGTACGGTTGGG
Found at i:17463062 original size:26 final size:26
Alignment explanation
Indices: 17463033--17463084 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17463023 TCCCGTCCGA
17463033 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGGATGAACTCCGTAT
17463059 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGGATGAACTCCGTAT
17463085 GCCTAAGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGGATGAACTCCGTAT
Found at i:17463773 original size:159 final size:158
Alignment explanation
Indices: 17463431--17463871 Score: 437
Period size: 159 Copynumber: 2.8 Consensus size: 158
17463421 GTATGCATAG
* * * * *
17463431 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGAGATCAGCCGGCC
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAGCCGGCG
* * * *
17463496 GAAGAGGGAGAATGCGCAAGTCGAGGATCGGCCCGAT-CCCCTCTGTGTACTGTCGATCCTACTG
66 GAA-AGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCCCACTG
* * * * *
17463560 TCGCAACCTTTGGTGCGATCGGATCTTAG
130 CCACAACCTCTGGTGCGATCGGATATTAA
* * * * * *
17463589 AC-TGGGAATGAACTGCATATGCCTAAGTCAAACCACGAAACGATCGTGCGAGCGCTGAGCCGGT
1 ACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAGCCGG-
* * * *
17463653 CGGAAAGGTATAATGCACAAGTCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCACT
64 CGGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCCCACT
* * *
17463718 GCCACAACCCTCT-GTTCGGTTGGGA-ATTAA
129 GCCACAA-CCTCTGGTGC-GATCGGATATTAA
* * * * *
17463748 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-ACGCGTG-TAGGTGCTCAACCGG
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGA-GAGCTCAGCCGG
* * * *
17463811 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATCC
64 -CGGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCC
17463872 TGCTGTCGTA
Statistics
Matches: 230, Mismatches: 45, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.42
159 123 0.53
160 10 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAGCCGGCG
GAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCCCACTGC
CACAACCTCTGGTGCGATCGGATATTAA
Found at i:17463930 original size:26 final size:26
Alignment explanation
Indices: 17463901--17463953 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17463891 CTGGCCTGAT
17463901 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
17463927 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
17463953 C
1 C
17463954 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:17464551 original size:11 final size:11
Alignment explanation
Indices: 17464535--17464565 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
17464525 GTTAGGCTCG
17464535 CCGACGATGCT
1 CCGACGATGCT
17464546 CCGACGATGCT
1 CCGACGATGCT
17464557 CCGACGATG
1 CCGACGATG
17464566 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.16
Consensus pattern (11 bp):
CCGACGATGCT
Found at i:17464673 original size:26 final size:26
Alignment explanation
Indices: 17464635--17464684 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17464625 GGCTCAAAAT
17464635 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17464661 CTTAGAC-ATGGAATGAACTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
17464685 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17465061 original size:159 final size:156
Alignment explanation
Indices: 17464660--17465097 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 156
17464650 AACTCCGTAT
* *
17464660 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGGAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
17464725 TCGGTCAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGTTCCCCCTGCGTGCTATCGATCCT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCTGCGTGCTATCGATCCC
* * * *
17464790 GCTGTCGCAACCCTCGGCCCGATCTGA
130 ACTGCCACAACCCTCGGCCCGAGCTGA
* * * * * *
17464817 TCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACACACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTACGCCTAAGCCAAC-CACGAAACGAGCGTGCGGGTGCTCA
** * * ** *
17464881 GCCTACC-GAAGAGGCATAATGCGCAAGCTGGGGATCAGTTCGATCCCCCT-CTATGTGCTGTCG
64 GCCGGCCAG-AGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCTGC---GTGCTATCG
* ** *
17464944 GTCCCACTGCCACAACCCTCGGTTCG-GCTGGG
125 ATCCCACTGCCACAACCCTCGGCCCGAGCT-GA
* * * * *
17464976 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAATCCATGAAACGGGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
17465041 CCGGCCAGAGAGACAGAATGCACAAGC-CAGGGATCGGCCCGGTCCCCCCTGCGTGCT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCTGA-GGATCAGCCCGAT-CCCCCTGCGTGCT
17465098 GCCTATCTTG
Statistics
Matches: 218, Mismatches: 50, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.02
157 90 0.41
158 7 0.03
159 107 0.49
160 9 0.04
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCTGCGTGCTATCGATCCCA
CTGCCACAACCCTCGGCCCGAGCTGA
Found at i:17465164 original size:26 final size:26
Alignment explanation
Indices: 17465135--17465187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17465125 CCGGTCCGAT
17465135 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17465161 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17465187 C
1 C
17465188 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17466917 original size:159 final size:158
Alignment explanation
Indices: 17466572--17466972 Score: 448
Period size: 159 Copynumber: 2.5 Consensus size: 158
17466562 AACTCTATAT
* * *
17466572 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
17466637 TCGGTCGGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCTCCTATGTGCTGTCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGCCCAGATCCCTCCTATGTGCTGTCGATCC
* * **
17466702 TACTACCGCAACCCTCAGTCTGGTCCAA
131 CACTACCACAACCCTCAGTCTCATCCAA
* * * ** * * *
17466730 TCTTAGACAGGGAATGAACTCTATATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
17466795 TCGGCCGGAGAGGCATAATGTGCAAGCTGGGGATTAGCCCAG-TCCC-CCTCTTCGTGCTGTCGG
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-TAGCCCAGATCCCTCCT-AT-GTGCTGTCGA
* ***
17466858 TCCCACTGCCACAACCCTCAGTC-CATCTGGG
128 TCCCACTACCACAACCCTCAGTCTCATC-CAA
* * *
17466889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
*
17466954 CCGGCCGGAGAGGCAGAAT
66 TCGGCCGGAGAGGCAGAAT
17466973 ACGAAAGTCA
Statistics
Matches: 197, Mismatches: 42, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.02
158 89 0.45
159 105 0.53
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGCCCAGATCCCTCCTATGTGCTGTCGATCC
CACTACCACAACCCTCAGTCTCATCCAA
Found at i:17466999 original size:159 final size:157
Alignment explanation
Indices: 17466572--17467018 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
17466562 AACTCTATAT
* * *
17466572 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
17466637 TCGGTCGGAGAAGCAGAATGCGCAAGCCGGGGATCG-GCCTGATCCCTCCTATGTGCTGTCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGAACC-GGTCCCTCCTATGTGCTGTCGATC
* * **
17466701 CTACTACCGCAACCCTCAGTCTGGTCCAA
129 CCACTACCACAACCCTCAGTCTCATCCAA
* * * ** * * *
17466730 TCTTAGACAGGGAATGAACTCTATATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
17466795 TCGGCCGGAGAGGCATAATGTGCAAGCTGGGGAT-TAGCCCAGTCCC-CCTCTTCGTGCTGTCGG
66 TCGGCCGGAGAGGCAGAATGCGCAAGC-GGGGATCGA-ACCGGTCCCTCCT-AT-GTGCTGTCGA
* ***
17466858 TCCCACTGCCACAACCCTCAGTC-CATCTGGG
127 TCCCACTACCACAACCCTCAGTCTCATC-CAA
* * *
17466889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
17466954 CCGGCCGGAGAGGCAGAATACGAAAGTCAGGGATCGAACCGGTCCCTTCTACGTGCTGCCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGAACCGGTCCCTCCTATGTGCTGTCGATCC
17467019 TATTGTCGCA
Statistics
Matches: 226, Mismatches: 54, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 100 0.44
159 118 0.52
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGGCCGGAGAGGCAGAATGCGCAAGCGGGGATCGAACCGGTCCCTCCTATGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCTCATCCAA
Found at i:17467808 original size:26 final size:26
Alignment explanation
Indices: 17467770--17467822 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17467760 GGCTCAAAAT
*
17467770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17467796 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
17467822 C
1 C
17467823 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17468158 original size:159 final size:157
Alignment explanation
Indices: 17467795--17468210 Score: 421
Period size: 159 Copynumber: 2.6 Consensus size: 157
17467785 AACTCCGTAT
* *
17467795 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** ** *
17467860 CCGACC-AGAGAGGCAGAATGCGCAAGCCAGAGATCGGTTCGGTCCCCCTGCGTGCTGTCAATCC
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTGCGTACTGTCAATCC
17467924 AGATGCAGCAACCCTCAGTCCGGTCTGA
130 AGATGCAGCAACCCTCAGTCCGGTCTGA
* * * * * * * *
17467952 TCTTACG-C-TGGGAATGAACTCCGTATGCATAAGTCAACCTATGAAACGAGCGTGCAGACGCTG
1 GCTTA-GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
17468015 AGCGGACCGAAGAGGCATAATGCGCAAGGCGGGGATCGGCCCAATCTCCCTCTGCGTACTGTCAG
64 AGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATC-CCC-CTGCGTACTGTCAA
* * ** * *
17468080 TCCTGCTGCCA-CAACCCTTGGTCTGG-CTGGG
127 TCCAGATG-CAGCAACCCTCAGTCCGGTCT-GA
* * *
17468111 GCTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
17468175 GCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATC
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC
17468211 AGCTCGGTCC
Statistics
Matches: 205, Mismatches: 44, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 84 0.41
158 10 0.05
159 107 0.52
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTGCGTACTGTCAATCCA
GATGCAGCAACCCTCAGTCCGGTCTGA
Found at i:17468453 original size:185 final size:184
Alignment explanation
Indices: 17468124--17468580 Score: 571
Period size: 185 Copynumber: 2.5 Consensus size: 184
17468114 TAGACATGGA
* *
17468124 ATGAACT-CGCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGAG
1 ATGAACTCCG-TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAG
* * * * *
17468188 GCAGAATACGCAAGCCGAGGATCAGCTCGGTCCCCCCTACGTGCTGCCGATCATGCTGTCGCAAC
65 GCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCACGCTGTCGCAAC
* * * * **
17468253 CCTTGGTCTGATCCGATCTTAGACTGGGGATGAACTTTGTAAGCTTAGACTAGGG-
130 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGA-TAGGGT
* **
17468308 ATGAACTTCCGTATGCCTAAGTCAACCTACAAAACGAGCGTGCGGGTGCTCAGTGGACCGGAGAG
1 ATGAAC-TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAG
* * *
17468373 GCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATC-CGACTGTCGTAA
65 GCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCACG-CTGTCGCAA
* * *
17468437 CCCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATGGGGT
129 CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGATAGGGT
** * ** * *
17468493 ATGAACTCCGTATGTGTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGG
*
17468558 CA-AGTTGCGCAAGCCGGGGATCG
66 CAGA-ATGCGCAAGCCGGGGATCG
17468581 AATGGGTGGT
Statistics
Matches: 235, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
183 1 0.00
184 80 0.34
185 152 0.65
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGATCACGCTGTCGCAACC
CTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGATAGGGT
Found at i:17468484 original size:26 final size:26
Alignment explanation
Indices: 17468455--17468506 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17468445 CCGATCCGAT
*
17468455 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
*
17468481 CTTAGATGGGGTATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
17468507 TGTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:17469192 original size:159 final size:158
Alignment explanation
Indices: 17468836--17469198 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 158
17468826 AACTCCGTAT
* * * * *
17468836 GCTTGGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCGCTTAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAAATGAGTGTGCGGGCACTGAA
* * *
17468901 CCGGTCCGAGAGGTAGAATGCGCAAGTCAGGGATCGACCCAATCCCCCCTGCATGCGATCGATCC
66 CCGGTCCGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCAATCCCCCCTACATGCGATAGATCC
* *
17468966 TGCTATCTCAACCCTTGATCCGGTCTGA
131 TGCTAGCTCAACCCTCGATCCGGTCTGA
* * * *
17468994 TCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCATTAAATGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACTAAATGAGTGTGCGGGCACTGA
* * * * * ** * *
17469058 GCCGGT-CGAAGAGGCATAATGTGCAAGTC-GAGGATTGGCCCTGTCCCCCTCTACGTGCTGCTA
65 ACCGGTCCG-AGAGGCAGAATGCGCAAGTCAG-GGATCGACCCAATCCCCC-CTACATGC-GATA
* *
17469121 G-TCCTGCT-GCTACATCCCTCGATCCGG-CTGGG
126 GATCCTGCTAGCT-CAACCCTCGATCCGGTCT-GA
**
17469153 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAAA
17469199 CGGCGTGTGG
Statistics
Matches: 166, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 93 0.56
159 65 0.39
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAAATGAGTGTGCGGGCACTGAA
CCGGTCCGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCAATCCCCCCTACATGCGATAGATCC
TGCTAGCTCAACCCTCGATCCGGTCTGA
Found at i:17469340 original size:26 final size:26
Alignment explanation
Indices: 17469311--17469363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17469301 CCGGTCCAAT
*
17469311 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17469337 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17469363 C
1 C
17469364 CAAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17469716 original size:26 final size:26
Alignment explanation
Indices: 17469677--17469729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17469667 TCGGTCTGAT
17469677 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17469703 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
17469729 C
1 C
17469730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17470231 original size:26 final size:26
Alignment explanation
Indices: 17470202--17470279 Score: 156
Period size: 26 Copynumber: 3.0 Consensus size: 26
17470192 CCGGTCCAAT
17470202 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17470228 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17470254 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17470280 TTTAAGCCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17470952 original size:26 final size:26
Alignment explanation
Indices: 17470916--17470968 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17470906 CTGGTCTGAT
17470916 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
17470942 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17470968 C
1 C
17470969 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17472106 original size:355 final size:354
Alignment explanation
Indices: 17471311--17472109 Score: 1024
Period size: 355 Copynumber: 2.3 Consensus size: 354
17471301 ACTCCGTATG
* ** ** * * *
17471311 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGTATACAGGCGTTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGCTCAGT
* * * * * * *
17471376 CGGTCGGAGAGGTAGAATGCACAAGTCGGGGATCGACCTGGTCCCCCCTGCATGTTGTCGATCCT
66 CGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTACATGCTGTCGATCCT
* *
17471441 GCTGTTGGTCCTACTACTACAACCCTCGATCCGGTCCGATCTTAGACTGCAAATGAACTCTATAC
131 GCTGCTGGTCCTACTACTACAACCCTCGATCCGGTCCGATCTTAGACTGCAAATGAACTCCATAC
* * * *
17471506 GCTTAGACACAGAATGAAGTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCAG
196 GCTTAGACACAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGTGCTCAG
* **
17471571 TCGATCGGAGAGGTAAAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGATCC
261 TCGATCGGAGAGGTAAAATGTGCAAGCCGAGGATCAACCTGGTCCCCCCTGCGTGCTATCGATCC
* * *
17471636 TACTATCGGAACCCTCAATCTGGTCCGAT
326 TACTACCGCAACCCTCAATCCGGTCCGAT
* *
17471665 CTTATG-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGCGCTCAG
1 CTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGCTCAG
* * * * * *
17471729 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTAGTCCCCTCCTACATGCTGTCGATC
65 TCGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTAGTCCCC-CCTACATGCTGTCGATC
* ** * * * * ** *
17471794 CTGCTGCTGGTCCTGCTACTGTAACCCTTGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGT
129 CTGCTGCTGGTCCTACTACTACAACCCTCGATCCGGTCCGATCTTAGACTGCAAATGAACTCCAT
** *
17471859 ACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTC
194 ACGCTTAGACACAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGTGCTC
* * * * * *
17471924 AGTCGGTCGGAGAGGTAGAATGTGTAAGCCGAGGATCAACCTGGTCCCGCTTGCGTGCTGTCGAT
259 AGTCGATCGGAGAGGTAAAATGTGCAAGCCGAGGATCAACCTGGTCCCCCCTGCGTGCTATCGAT
* * *
17471989 CCTACTGCCGCAACCCTCAGTCCGGTCTGAT
324 CCTACTACCGCAACCCTCAATCCGGTCCGAT
* *
17472020 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGCTCAGT
* *
17472085 CGATTGGAGAGGTATAATGCGCAAG
66 CGATCGGAGAGGTAGAATGCGCAAG
17472110 TCAGGGATCG
Statistics
Matches: 375, Mismatches: 67, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
354 89 0.24
355 286 0.76
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (354 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGCTCAGT
CGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTACATGCTGTCGATCCT
GCTGCTGGTCCTACTACTACAACCCTCGATCCGGTCCGATCTTAGACTGCAAATGAACTCCATAC
GCTTAGACACAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGTGCTCAG
TCGATCGGAGAGGTAAAATGTGCAAGCCGAGGATCAACCTGGTCCCCCCTGCGTGCTATCGATCC
TACTACCGCAACCCTCAATCCGGTCCGAT
Found at i:17472217 original size:159 final size:158
Alignment explanation
Indices: 17471861--17472268 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 158
17471851 AACTCCGTAC
* * * *
17471861 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * **
17471926 TCGGTCGGAGAGGTAGAATGTGTAAGCCGAGGATCAACCTGGTCCCGCTTGCGTGCTGTCGATCC
66 TCGATCGGAGAGGTAGAATGCGCAAGCAGAGGATCAACCTGATCCCCCTTGCGTGCTACCGATCC
* * *
17471991 TACTGCCGCAACCCTCAGTCCGGTCTGA
131 CACTGCCACAACCCTCAGTCCGGACTGA
* * * *
17472019 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * **
17472084 TCGATTGGAGAGGTATAATGCGCAAGTCAG-GGATC-GGCTCGATCCCCCTCTGCGTGCTACCGA
66 TCGATCGGAGAGGTAGAATGCGCAAG-CAGAGGATCAACCT-GATCCCCCT-TGCGTGCTACCGA
* * *
17472147 TCCCGCTGCCACAACCCTCGGTCC-GACTGGG
128 TCCCACTGCCACAACCCTCAGTCCGGACT-GA
* * * * * **
17472178 GCTTATACTTGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
** * * *
17472243 TCGGCCGAAGGGGCAGAATGCGCAAG
66 TCGATCGGAGAGGTAGAATGCGCAAG
17472269 TTGGGCATCT
Statistics
Matches: 202, Mismatches: 44, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 2 0.01
158 93 0.46
159 107 0.53
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
TCGATCGGAGAGGTAGAATGCGCAAGCAGAGGATCAACCTGATCCCCCTTGCGTGCTACCGATCC
CACTGCCACAACCCTCAGTCCGGACTGA
Found at i:17472269 original size:159 final size:157
Alignment explanation
Indices: 17471861--17472363 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 157
17471851 AACTCCGTAC
* * *
17471861 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
17471926 TCGGTCGGAGAGGTAGAATGTGTAAG-CCGAGGATCAACCTGGTCCCGCT-TGCGTGCTGTCGAT
66 TCGGTCGGAGAGGTAGAATGCGCAAGTCAG-GGATCAGCC-GATCCCCCTCTGCGTGCTGTCGAT
* * *
17471989 CCTACTGCCGCAACCCTCAGTCCGGTCTGA
129 CCTGCTGCCGCAACCCTCGGTCC-GACTGA
* * * **
17472019 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * **
17472084 TCGATTGGAGAGGTATAATGCGCAAGTCAGGGATCGGCTCGATCCCCCTCTGCGTGCTACCGATC
66 TCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCAGC-CGATCCCCCTCTGCGTGCTGTCGATC
* * *
17472149 CCGCTGCCACAACCCTCGGTCCGACTGGG
130 CTGCTGCCGCAACCCTCGGTCCGACT-GA
* * * * **
17472178 GCTTATACTTGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
17472243 TCGGCCGAAGGGGCAGAATGCGCAAGT-TGGGCATCTGCCCGATCCCCC-CTAG-GTGGTGTCGA
66 TCGGTCGGAGAGGTAGAATGCGCAAGTCAGGG-ATCAG-CCGATCCCCCTCT-GCGTGCTGTCGA
* *
17472305 TCCTGCTGCCGCAACCCTCGATCCGGTCTGA
128 TCCTGCTGCCGCAACCCTCGGTCC-GACTGA
* *
17472336 TCTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACTT-GGAATGAACTCCGTATGC
17472364 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 148 0.53
159 126 0.45
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCGATCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGACTGA
Found at i:17472673 original size:27 final size:28
Alignment explanation
Indices: 17472639--17472700 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
17472629 GGATTTTTTA
17472639 AAATTTTTTTAGAAAGAGTTTTGTCCCC
1 AAATTTTTTTAGAAAGAGTTTTGTCCCC
*
17472667 AAATTTTTTTAGACAGAGTTTTGTCCCC
1 AAATTTTTTTAGAAAGAGTTTTGTCCCC
17472695 AAATTT
1 AAATTT
17472701 AGAAAGAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (28 bp):
AAATTTTTTTAGAAAGAGTTTTGTCCCC
Found at i:17473210 original size:159 final size:159
Alignment explanation
Indices: 17472907--17473335 Score: 371
Period size: 159 Copynumber: 2.7 Consensus size: 159
17472897 TACTCTGTAT
* * * * * *** *
17472907 GCTTAGACATGTAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATAAACTCTCTATGCATAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAA
* ** * * ** *
17472972 CTGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGTCGATC
** * * * *
17473037 CTGCTACTATAACCCTCAGTTTGGTCT-GA
131 CCACTACCACAACCCTCAGTCT-GACTGGA
* * * * * * * *
17473066 TCTTAGAC-TGGGAATGAACTC-CGTATGCATAGGTCAACCCATGAAATGAGCGTACGGGCGTTG
1 GCTTAGACAT-GGAATAAACTCTC-TATGCATAAGCCAACCCATGAAACGAGCGTACAGGCGCTC
* * * *
17473129 AACCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCTCGCTCTACGTGCTG-CTG
64 AACCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGTC-G
* *
17473193 GTCCCACTACCACAACCCTCAGTCTGACTGGG
128 ATCCCACTACCACAACCCTCAGTCTGACTGGA
* * * *
17473225 GCTTAGACATGGAATAAACTCTCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATAAACTCTCTATGCATAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAA
* * * * * *
17473290 CCGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGGTCCC
66 CCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCC
17473336 ACTGCATGCT
Statistics
Matches: 212, Mismatches: 52, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
158 5 0.02
159 205 0.97
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATAAACTCTCTATGCATAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAA
CCGACCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCCTACGTGCTGTCGATC
CCACTACCACAACCCTCAGTCTGACTGGA
Found at i:17473412 original size:26 final size:26
Alignment explanation
Indices: 17473383--17473435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17473373 CCAGTCTGAT
17473383 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17473409 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
17473435 C
1 C
17473436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17474337 original size:26 final size:26
Alignment explanation
Indices: 17474299--17474353 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
17474289 CCAGTCTGAT
17474299 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17474325 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17474351 CTT
1 CTT
17474354 GAGCCAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17474493 original size:184 final size:185
Alignment explanation
Indices: 17474139--17474509 Score: 487
Period size: 185 Copynumber: 2.0 Consensus size: 185
17474129 TCTGGCTGGG
* * *
17474139 GCTTAGACATAGAATGAACTCTGTATGCCTACGCCAACCCACGAAACAAGTGTGTGGGCACTCAA
1 GCTTAGACATAGAATGAACTCCGTATGCCTACGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
* * *
17474204 CCGATCGGAAAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATTCCCCCCTGCGTGCTACCGATC
66 CCGATCGGAAAGGCAGAATACGCAAGCCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTACCGATC
* *
17474269 CTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
131 CTGCTGCCACAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCCGTAT
* * ** * *
17474324 GCTTAGACATGGAATGAACTCCGTATGCTTGA-GCCAACCCACGAAATGAGCGTGCGGTCGCTCA
1 GCTTAGACATAGAATGAACTCCGTATGCCT-ACGCCAACCCACGAAACAAGCGTGCGGGCACTCA
* * * ** * *
17474388 GCC-AGTCGGAAAGGCAGAATACGTAAGTCGGGGATC-GGTCGGGTCCCCCCTGCGTGCTATCGA
65 ACCGA-TCGGAAAGGCAGAATACGCAAGCCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTACCGA
* * *
17474451 TCCTGCTGCCGCAACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTTCGTAT
129 TCCTGCTGCCACAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCCGTAT
17474508 GC
1 GC
17474510 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
184 77 0.48
185 82 0.51
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTACGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
CCGATCGGAAAGGCAGAATACGCAAGCCGGGGATCAGCCCGAGTCCCCCCTGCGTGCTACCGATC
CTGCTGCCACAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:17474685 original size:159 final size:158
Alignment explanation
Indices: 17474324--17475105 Score: 561
Period size: 159 Copynumber: 4.9 Consensus size: 158
17474314 AACTCCGTAT
* * * *
17474324 GCTTAGACATGGAATGAACTCCGTATGCTTGAGCCAACCCACGAAATGAGCGTG-CGGTCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGT-GCTGA
* * * * * ** * *
17474388 GCCAGTCGGAAAGGCAGAATACGTAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTGCTATCGATC
65 ACCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* * *
17474453 CTGCTGCCGCAACCCTCGATCCGGTCTA-A
130 CTGCTGCCACAACCCTCGGT-CTGTCTAGA
* * * *
17474482 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTGA
* * * * * * *
17474546 ACTAGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGAGCTGCCGGT
65 ACCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGAT
* * * *
17474611 CCGGCTACCACAACCCTCGGTCTGACTAGG
129 CCTGCTGCCACAACCCTCGGTCTGTCTAGA
* * * * * *
17474641 GCTTAGACATGGAATGAACTCCCTATACCCAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTGAA
* ** * * * *
17474706 TC-GACTGGAGAGGTAGAATACACAAATCGGGGATCGACCCGGTCCACCCCTACGTGCTACCGAT
66 CCAG-CCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCC-CCCCTGCGTGCTACCGAT
** * ** *
17474770 GTTGCTGTCGTAACCCTCAGTCTGGTCT-GA
129 CCTGCTGCCACAACCCTCGGTCT-GTCTAGA
* * * * * *
17474800 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGAGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTGA
* * * ** * * * * *** *
17474864 GCCAACCAGAGAGGCATAATGTGCAAGCCAGGGATCAACCGGGTCCCCCTCTGCGTGCTGTAGGT
65 ACCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGAT
* * * * * *
17474929 CCCGCTGCCACAACCATCGCTCTGGCTGGG
129 CCTGCTGCCACAACCCTCGGTCTGTCTAGA
* * * * * * *
17474959 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTGAA
** *** * * * * * * *
17475024 CCTA-CTGGAGAGGCAGAATGTACAAGCCGGGGACCGACCTGATCCCCCCTACCTGCTACCAATC
66 CC-AGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* *
17475088 CTGCTGTCGCAACCCTCG
130 CTGCTGCCACAACCCTCG
17475106 ATCCGGTTTG
Statistics
Matches: 476, Mismatches: 134, Indels: 28
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.00
158 125 0.26
159 341 0.72
160 9 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTGAA
CCAGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCTGTCTAGA
Found at i:17474911 original size:318 final size:316
Alignment explanation
Indices: 17474324--17475134 Score: 1005
Period size: 318 Copynumber: 2.6 Consensus size: 316
17474314 AACTCCGTAT
* * *
17474324 GCTTAGACATGGAATGAACTCCGTATGCTTGAGCCAACCCACGAAATGAGCGTGC-GGTCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGT-GCTCA
* * ** ** * * *
17474388 GCCAGTCGGAAAGGCAGAATACGTAAGTCGGGGATCGGTCGGGTCCCCCCTGCGTGCTATCGATC
65 GCCACT-GGAGAGGCAGAATACACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATC
* * * *
17474453 CTGCTGCCGCAACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCA
129 CTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
17474518 ACCCACGAAACGAGCGTGAGGGTGCTGAACTAGCCAGAGAGGCATAATGCGCAAGTCGGGGATCG
194 ACCCACGAAACGAGCATGAGGGCGCTGAACCAACCAGAGAGGCATAATGCGCAAGCCAGGGATCA
* * * * *
17474583 GCCCGGTCCCCCTCTGCGAGCTGCCGGTCCGGCTACCACAACCCTCGGTCTGACTAGG
259 ACCCGGTCCCCCTCTGCGAGCTGCAGGTCCCGCTACCACAACCATCGCTCTGACTAGG
* *
17474641 GCTTAGACATGGAATGAACTCCCTATACCCAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
17474706 TCGACTGGAGAGGTAGAATACACAAATCGGGGATCGACCCGGTCCACCCCTACGTGCTACCGATG
66 -CCACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGGTCC-CCCCTACGTGCTACCGATC
* * * *
17474771 TTGCTGTCGTAACCCTC-AGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
129 CTGCTGTCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
17474835 AACCCATGAAATGAGCATGAGGGCGCTGAGCCAACCAGAGAGGCATAATGTGCAAGCCAGGGATC
193 AACCCACGAAACGAGCATGAGGGCGCTGAACCAACCAGAGAGGCATAATGCGCAAGCCAGGGATC
* * * * * *
17474900 AACCGGGTCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCATCGCTCTGGCTGGG
258 AACCCGGTCCCCCTCTGCGAGCTGCAGGTCCCGCTACCACAACCATCGCTCTGACTAGG
* * *
17474959 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
** * * * * * *
17475024 CCTACTGGAGAGGCAGAATGTACAAGCCGGGGACCGACCTGATCCCCCCTACCTGCTACCAATCC
66 CC-ACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCC
* *
17475089 TGCTGTCGCAACCCTCGATCCGGTTTGATCTCAGACTGGGAATGAA
130 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
17475135 ATTTGTATGC
Statistics
Matches: 417, Mismatches: 71, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
317 144 0.35
318 273 0.65
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCACTGGAGAGGCAGAATACACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCT
GCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCATGAGGGCGCTGAACCAACCAGAGAGGCATAATGCGCAAGCCAGGGATCAAC
CCGGTCCCCCTCTGCGAGCTGCAGGTCCCGCTACCACAACCATCGCTCTGACTAGG
Found at i:17475168 original size:26 final size:26
Alignment explanation
Indices: 17475121--17475170 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
17475111 GTTTGATCTC
**
17475121 AGACTGGGAATGAAATTTGTATGCTT
1 AGACTGGGAATGAAATCCGTATGCTT
* *
17475147 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAAATCCGTATGC
17475171 CTAAGTCTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAAATCCGTATGCTT
Found at i:17476977 original size:26 final size:26
Alignment explanation
Indices: 17476939--17476991 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17476929 CCAGTCCGAT
17476939 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
17476965 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
17476991 C
1 C
17476992 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17478536 original size:26 final size:26
Alignment explanation
Indices: 17478496--17478546 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17478486 CAGTTCAATC
*
17478496 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
17478522 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
17478547 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:17479287 original size:159 final size:159
Alignment explanation
Indices: 17478871--17479288 Score: 418
Period size: 159 Copynumber: 2.6 Consensus size: 159
17478861 AACTCCGTAT
* *
17478871 GCTT-GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * *
17478935 CCAG-CTGGAGAGGCAGAATGCACAATCCGGGGA-CTGGCCCGATCTCCCCCTGCGTGCTATCAA
66 CCGGTC-GGAGAGGCAGAATGCATAATCCGGGGATC-GACCCGATCTCCCCCTACGTGCTATCAA
** * * *
17478998 TCTTGCTGCCGCAACCCTCAGTCCGATTCGA
129 TCCCGCTGCCACAACCCTCAGTCCGACTAGA
* * * * * * * * *
17479029 TCGTAGAC-TAGAAATGAACTCTGTATGCCTAAGTCAGCCCACGAAATGAGCGTGTAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * *
17479093 GCCGGTCGGAGAGGCATAATGCATAAGT-CGAGGATCGACCCGATC-CCCCTCTATGTGCTGTCG
65 GCCGGTCGGAGAGGCAGAATGCATAA-TCCGGGGATCGACCCGATCTCCCC-CTACGTGCTATCA
* *
17479156 GTCCCGCTGCCACAACCCTC-GATCCGACTAGG
128 ATCCCGCTGCCACAACCCTCAG-TCCGACTAGA
* * * * * *
17479188 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGTGCGGGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* *
17479253 TCGGTCGGAGAGGCAGAATGCGTAATCCGGGGATCG
66 CCGGTCGGAGAGGCAGAATGCATAATCCGGGGATCG
17479289 GTTCGGTCCC
Statistics
Matches: 205, Mismatches: 46, Indels: 17
0.76 0.17 0.06
Matches are distributed among these distances:
158 9 0.04
159 192 0.94
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCATAATCCGGGGATCGACCCGATCTCCCCCTACGTGCTATCAATC
CCGCTGCCACAACCCTCAGTCCGACTAGA
Found at i:17479382 original size:26 final size:26
Alignment explanation
Indices: 17479346--17479398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17479336 CCGGTCCGAT
17479346 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17479372 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17479398 C
1 C
17479399 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17480104 original size:26 final size:26
Alignment explanation
Indices: 17480066--17480115 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17480056 GGCTCAAACT
17480066 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17480092 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
17480116 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17481151 original size:26 final size:26
Alignment explanation
Indices: 17481100--17481152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17481090 CCGATCCGAT
**
17481100 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17481126 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17481152 C
1 C
17481153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17481446 original size:158 final size:157
Alignment explanation
Indices: 17481117--17481785 Score: 555
Period size: 158 Copynumber: 4.2 Consensus size: 157
17481107 TGGGAATGAA
* * * * **
17481117 CTCTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCAATTAAACGAGCGTGCGG
1 CTCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGG
* * * * *
17481182 GCACTCAGCCGGTC-GAAGAGG-TGAAATGCGCAAGCCGGGGATCGACCCCG-TCCCCCTCTGCG
63 GCGCTCAGCCGGCCAG-AGAGGCAG-AATGCGCAAGTCGGGGATCG-GCCCGATCCCCC-CTGCG
*** * **
17481244 TGCTATTGGT-CTCGCTGTCACAACCCTCAATCTG
124 TGCTATCAATCCT-GCTGCCACAACCCTCGGTCTG
* ** * * * * *
17481278 -ACTGGGCTTAGACTGGGAATGAGCTGCGTATGCCTGAGCCAACCCATGAAACAGGCGTGCAGGC
1 CTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGC
* * *
17481342 GCTCAGCCGGCCAGAGAGGCAGAATGTGCAAGTCGGGGACCGGCCCGGTCCCCCCTGCGTGCTAT
65 GCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTAT
* *
17481407 CAATCCTGCTACCGCAACCCTCGGTCTG
130 CAATCCTGCTGCCACAACCCTCGGTCTG
* ** *
17481435 CTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGC
* * * * *
17481500 GCTGAGCCAGCCAGAGAGGCATAATGCGCTAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTG
65 GCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-CTGCGTGCTA
* * * *
17481565 TCGATCCCGTTGCCACAACCCTCGAT-TCG
129 TCAATCCTGCTGCCACAACCCTCGGTCT-G
* ** * *
17481594 ACT-GGGGCTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGG-GTGTACG
1 -CTCTGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTG--CG
* * ** * * * * * * *
17481656 GGTGCTCATCCGATCGGAGAGGCAGAATACGTAAGTCGAGGATCGACCCGATCCCCACTACGTGC
62 GGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGC
* * *
17481721 TACCAATCCTACTGCCACAACCCTCGGTCCG
127 TATCAATCCTGCTGCCACAACCCTCGGTCTG
* *
17481752 GTCTGATCTTAAACTGGGAATGAACTCCGTATGC
1 CTCTGATCTTAGACTGGGAATGAACTCCGTATGC
17481786 TTAGACTGGG
Statistics
Matches: 402, Mismatches: 90, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
157 37 0.09
158 239 0.59
159 121 0.30
160 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCG
CTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTATC
AATCCTGCTGCCACAACCCTCGGTCTG
Done.