Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 122 of 138
Found at i:17481528 original size:316 final size:317
Alignment explanation
Indices: 17481117--17481785 Score: 756
Period size: 317 Copynumber: 2.1 Consensus size: 317
17481107 TGGGAATGAA
* **
17481117 CTCTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCAATTAAACGAGCGTGCGG
1 CTCTG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGG
* * *
17481182 GCACTCAGCCGGTCGAAGAGGTGAAATGCGCAAGCCGGGGATCGACCCCG-TCCCCCTCTGCGTG
64 GCACTCAGCCAGCCGAAGAGGTCAAATGCGCAAGCCGGGGATCG-CCCCGATCCCCCTCTGCGTG
* * * * * * *
17481246 CTATTGGTCTCGCTGTCACAACCCTCAA-TCTGACT-GGGCTTAGAC-TGGGAATGAGCTGCGTA
128 CTATCGATCCCGCTGCCACAACCCTCAATTC-GACTGGGGCTTAGACGT-GGAATGAACTCCCTA
* * * * **
17481308 TGCCTGAGCCAACCCATGAAACAGGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCAGAATGTGCAA
191 TGCCTAAGCCAACCCACGAAACAGGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAA
* * * * * * * * *
17481373 GTCGGGGACCGGCCCGGTCCCCCCTGCGTGCTATCAATCCTGCTACCGCAACCCTCGGTCTG
256 GTCGAGGACCGACCCGATCCCCACTACGTGCTACCAATCCTACTACCACAACCCTCGGTCCG
* * *
17481435 CTCTGATCTTAGACTAGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
1 CTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGC
* * * * *
17481500 GCTGAGCCAGCC-AGAGAGG-CATAATGCGCTAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGC
66 ACTCAGCCAGCCGA-AGAGGTCA-AATGCGCAAGCCGGGGATCGCCCCGATCCCCCTCTGCGTGC
* * *
17481563 TGTCGATCCCGTTGCCACAACCCTCGATTCGACTGGGGCTTAGACGTGGAATGAACTCCCTATGC
129 TATCGATCCCGCTGCCACAACCCTCAATTCGACTGGGGCTTAGACGTGGAATGAACTCCCTATGC
* * * * * * * * *
17481628 CTAAGCTAACCCACGAAACGGGTGTACGGGTGCTCATCCGATCGGAGAGGCAGAATACGTAAGTC
194 CTAAGCCAACCCACGAAACAGGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGTC
* *
17481693 GAGGATCGACCCGATCCCCACTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCCG
259 GAGGACCGACCCGATCCCCACTACGTGCTACCAATCCTACTACCACAACCCTCGGTCCG
* * *
17481752 GTCTGATCTTAAACTGGGAATGAACTCCGTATGC
1 CTCTGATCTTAGACTGGGAATGAACTCCATATGC
17481786 TTAGACTGGG
Statistics
Matches: 290, Mismatches: 55, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
315 6 0.02
316 122 0.42
317 156 0.54
318 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
CTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGC
ACTCAGCCAGCCGAAGAGGTCAAATGCGCAAGCCGGGGATCGCCCCGATCCCCCTCTGCGTGCTA
TCGATCCCGCTGCCACAACCCTCAATTCGACTGGGGCTTAGACGTGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAAACAGGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATACGCAAGTCGA
GGACCGACCCGATCCCCACTACGTGCTACCAATCCTACTACCACAACCCTCGGTCCG
Found at i:17481788 original size:26 final size:26
Alignment explanation
Indices: 17481759--17481811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17481749 CCGGTCTGAT
*
17481759 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
17481785 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
17481811 C
1 C
17481812 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:17482860 original size:26 final size:26
Alignment explanation
Indices: 17482819--17482871 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17482809 CTGGTTCGAT
17482819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17482845 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17482871 C
1 C
17482872 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17483079 original size:26 final size:26
Alignment explanation
Indices: 17483029--17483081 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17483019 CCAGTCTGAT
**
17483029 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17483055 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17483081 C
1 C
17483082 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17483890 original size:26 final size:26
Alignment explanation
Indices: 17483861--17483911 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17483851 CGATCTGATC
*
17483861 TTAGAC-TGGGAATGAACTCTGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
*
17483887 TTAGACATGGAATGAATTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
17483912 CCTATCCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:17484155 original size:158 final size:158
Alignment explanation
Indices: 17483887--17484387 Score: 398
Period size: 158 Copynumber: 3.2 Consensus size: 158
17483877 CTCTGTATGT
* * ** * * * * *
17483887 TTAGAC-ATGGAATGAATTCCGTATGCCTATCCCAACCGATGAAACAAGCGTGCGGGCAG-TCAA
1 TTAGACTA-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGC-GCTCAG
* * * * ** * * * * * * *
17483950 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCCTACGTGTTGTCGATCC
64 CCGGCCAGAAAGGCAGAATGCAAAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* *
17484015 TGCTGCCGCAACCCTCGGTCTGGTCCGATC
129 TGCTGCCGCAACCCTCGATCCGGTCCGATC
* *
17484045 TTAGACTAGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCC
1 TTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* * * *
17484110 GGCCAGAAAGGCATAATGCAAAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTATCAATCCC
66 GGCCAGAAAGGCAGAATGCAAAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCAATCCT
* * **
17484175 GCTGCCACAACCCTCGATCCGG-CTGGGGC
130 GCTGCCGCAACCCTCGATCCGGTC-CGATC
* * * * * * *
17484204 TTACAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGTCGCTCAGC
1 TTAGACTA-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *** * * * *
17484268 TGGTCGGAGAGGTAGAATGTGCAAGCCAAGGATCAGCCCGATCCCCTCTGCGTGCTGTCAATCTT
65 CGGCCAGAAAGGCAGAATGCAAAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
* * *
17484333 GCTGTCGCAACCCTTGATCCGGTTCGATC
130 GCTGCCGCAACCCTCGATCCGGTCCGATC
* * *
17484362 TTAGATTGGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTACGTATGC
17484388 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 142 0.54
159 122 0.46
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
TTAGACTAGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
GGCCAGAAAGGCAGAATGCAAAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCTG
CTGCCGCAACCCTCGATCCGGTCCGATC
Found at i:17484307 original size:159 final size:158
Alignment explanation
Indices: 17484053--17484354 Score: 361
Period size: 159 Copynumber: 1.9 Consensus size: 158
17484043 TCTTAGACTA
* * *
17484053 GGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAGCCGGCCAGAA
1 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAA
* * * *
17484118 AGGCATAATGCAAAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTATCAATCCCGCTGCCAC
66 AGGCAGAATGCAAAAGCCAAGGATCAGCCCGAT-CCCCTCTGCGTGCTATCAATCCCGCTGCCAC
17484183 AACCCTCGATCCGGCTGGGGCTTACACAT
130 AACCCTCGATCCGGCTGGGGCTTACACAT
* * * * * * * * *
17484212 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGTCGCTCAGCTGGTCGGAG
1 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAA
* *** * ** * *
17484277 AGGTAGAATGTGCAAGCCAAGGATCAGCCCGATCCCCTCTGCGTGCTGTCAATCTTGCTGTCGCA
66 AGGCAGAATGCAAAAGCCAAGGATCAGCCCGATCCCCTCTGCGTGCTATCAATCCCGCTGCCACA
*
17484342 ACCCTTGATCCGG
131 ACCCTCGATCCGG
17484355 TTCGATCTTA
Statistics
Matches: 117, Mismatches: 26, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
158 38 0.32
159 79 0.68
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAA
AGGCAGAATGCAAAAGCCAAGGATCAGCCCGATCCCCTCTGCGTGCTATCAATCCCGCTGCCACA
ACCCTCGATCCGGCTGGGGCTTACACAT
Found at i:17484390 original size:26 final size:26
Alignment explanation
Indices: 17484361--17484413 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17484351 CCGGTTCGAT
* * *
17484361 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
17484387 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17484413 C
1 C
17484414 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17485526 original size:26 final size:26
Alignment explanation
Indices: 17485497--17485560 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
17485487 TCTTAGATTG
*
17485497 GGAATGAACTCTGCATGCGTAGACAT
1 GGAATGAACTCCGCATGCGTAGACAT
17485523 GGAATGAACTCCGCATGCGTAGACAT
1 GGAATGAACTCCGCATGCGTAGACAT
*
17485549 GGAATTAACTCC
1 GGAATGAACTCC
17485561 ATATGCCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (26 bp):
GGAATGAACTCCGCATGCGTAGACAT
Found at i:17486045 original size:26 final size:26
Alignment explanation
Indices: 17486016--17486068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17486006 CCAGACCGAT
17486016 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
17486042 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
17486068 C
1 C
17486069 CTAAGTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:17486356 original size:355 final size:351
Alignment explanation
Indices: 17485699--17486556 Score: 988
Period size: 355 Copynumber: 2.5 Consensus size: 351
17485689 CTGGTCCATT
* * *
17485699 CTTAGACTAGGAATGAACTCAGTATGCATAAGTCAACCCACGAAACGAGCGTGCATGCGCTGC-G
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT-CAG
* *
17485763 CCGGTCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCG-T-TCACC--CTT--TG-C-AT--
64 CCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCACCTGCTTGCTGTCGATCC
*
17485818 GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
129 GCTGTCGATCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
17485883 GCCTAAGCCAACCCACGAAATGGGCATACGGATGCTCAACCAGCCAGAGAGGCAGAATGCGTAAG
194 ACCGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCAAG
* * * * *
17485948 CCTGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCCAGACC
259 CCTGGGATCGGCCCGGTCCCCCCTACGTACTGTCGATCCTACTGCCACAACCCTCGGTCCA-ACC
17486013 GATCTTAGACTGGGAATGAAATCCATATG
323 GATCTTAGACTGGGAATGAAATCCATATG
* *
17486042 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* *
17486107 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCTTGCTGTCGATCC
65 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCAC-CTGCTTGCTGTCGAT-C
* *
17486172 CGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTA
128 CGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTA
** * * * *** *
17486237 TACCGAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGGTTGGAGAGGCAAAATGTGCAA
193 TACCGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCAA
* * * *
17486302 GCC-GAGGATCGGCCCGGTCCCCCCTACGTACTG-CTGATCCTACTGTCGCAACCCTCGTTCCAT
258 GCCTG-GGATCGGCCCGGTCCCCCCTACGTACTGTC-GATCCTACTGCCACAACCCTCGGTCCAA
** *
17486365 CCGATCTTAGACTGGGAATGAGCTCCGTATG
321 CCGATCTTAGACTGGGAATGAAATCCATATG
* * * * * *
17486396 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * * *
17486461 TGGCCGGAGAGGCAGAATGCGTAGGCCGGGGATCGGCCTGATCCCTCACTGCATGCTGTCGATCC
65 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCAC-CTGCTTGCTGTCGATCC
* * **
17486526 TGCT-ACTGGTCCTGCTACCGTAACCCTCGGT
129 -GCTGTC-GATCCTGCTACCACAACCCTCGGT
17486557 TTGATTCGGT
Statistics
Matches: 433, Mismatches: 64, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
342 1 0.00
343 95 0.22
344 1 0.00
345 2 0.00
346 1 0.00
348 3 0.01
350 2 0.00
351 1 0.00
352 2 0.00
353 3 0.01
354 160 0.37
355 162 0.37
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (351 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
GGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCACCTGCTTGCTGTCGATCCGC
TGTCGATCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATAC
CGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCAAGCC
TGGGATCGGCCCGGTCCCCCCTACGTACTGTCGATCCTACTGCCACAACCCTCGGTCCAACCGAT
CTTAGACTGGGAATGAAATCCATATG
Found at i:17486399 original size:26 final size:26
Alignment explanation
Indices: 17486370--17486422 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17486360 TCCATCCGAT
*
17486370 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
17486396 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17486422 C
1 C
17486423 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17486553 original size:354 final size:355
Alignment explanation
Indices: 17485699--17486591 Score: 933
Period size: 354 Copynumber: 2.6 Consensus size: 355
17485689 CTGGTCCATT
* * * * * * *
17485699 CTTAGACTAGGAATGAACTCAGTATGCATAAGTCAACCCACGAAACGAGCGTGCATGCGCTGC-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCAGGCACT-CAG
* * * * * * *
17485763 CCGGTCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCG-TTCACC-CT---T--TG-C-AT-
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCACTGCATGCTGTCGATC
* *
17485818 --GCTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCT
130 CCGCTCTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGT
* * * * * *
17485881 ATGCCTAAGCCAACCCACGAAATGGGCATACGGATGCTCAACCAGCCAGAGAGGCAGAATGCGTA
195 ATACCGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCA
* * * * *
17485946 AGCCTGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTGGTCCAGA
260 AGCCTGGGATCGGCCCGGTCCCCCCTACGTACTGTCGATCCTACTGCCACAACCCTCGGTCCAGA
17486011 CCGATCTTAGACTGGGAATGAAATCCATATG
325 CCGATCTTAGACTGGGAATGAAATCCATATG
* * * * *
17486042 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCAGGCACTCAGC
* * * * *
17486107 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCTTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCACTGCATGCTGTCGATCC
* * *
17486172 CGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTA
131 CGCTCTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTA
** * * * *** *
17486237 TACCGAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGGTTGGAGAGGCAAAATGTGCAA
196 TACCGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCAA
* * *
17486302 GCC-GAGGATCGGCCCGGTCCCCCCTACGTACTG-CTGATCCTACTGTCGCAACCCTCGTTCCA-
261 GCCTG-GGATCGGCCCGGTCCCCCCTACGTACTGTC-GATCCTACTGCCACAACCCTCGGTCCAG
* ** *
17486364 TCCGATCTTAGACTGGGAATGAGCTCCGTATG
324 ACCGATCTTAGACTGGGAATGAAATCCATATG
* * *
17486396 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCAGGCACTCAG
* * * * * *
17486460 CTGGCCGGAGAGGCAGAATGCGTAGGCCGGGGATCGGCCTGATCCCTCACTGCATGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCACTGCATGCTGTCGATC
* ** * ** * **
17486525 CTGCTACT-GGTCCTGCTACCGTAACCCTCGGTTTGATTCGGTATTAGAC-TGGGAATGAACTCC
130 CCGCT-CTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACAT-GGAATGAACTCC
17486588 GTAT
193 GTAT
17486592 GCTTAGACAT
Statistics
Matches: 461, Mismatches: 71, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
342 1 0.00
343 95 0.21
344 4 0.01
345 2 0.00
348 1 0.00
350 2 0.00
351 1 0.00
352 2 0.00
353 1 0.00
354 189 0.41
355 163 0.35
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCAGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCACTGCATGCTGTCGATCC
CGCTCTCGGTCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTA
TACCGAAGCCAACCCACGAAATGAGCATACGGACGCTCAACCAGCCAGAGAGGCAAAATGCGCAA
GCCTGGGATCGGCCCGGTCCCCCCTACGTACTGTCGATCCTACTGCCACAACCCTCGGTCCAGAC
CGATCTTAGACTGGGAATGAAATCCATATG
Found at i:17486858 original size:158 final size:157
Alignment explanation
Indices: 17486593--17487096 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 157
17486583 ACTCCGTATG
* * * *
17486593 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTTAGC
* * * * * * * *
17486658 CGACCGGAGAGGTAGAATGTGGAAGCTGGGGATCGGCTCGATCCCCCCTGTGTTCTATTGATCTT
66 CGACCGGAGAGGCAGAATGCGGAAGCTGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCT
17486723 GCTACCCGAACCCTCGGTCCAGTCTGAT
131 GCTACCCGAACCCTCGGTCC-GTCTGAT
** * * * *
17486751 CTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTTAG
* * * * * *
17486815 CCGA-CGGAAGAGGCATAATGCGGAAGTTGAGGATCGGGTCGATCCCACTCTGCATGCTGTCGGT
65 CCGACCGG-AGAGGCAGAATGCGGAAGCTGAGGATCGGCTCGATCCC-CCCTGCGTGCTGTCGAT
* * **
17486879 CCTGCTGCCAC-AACCCTCGGTCCGACTGGGG
128 CCTGCTACC-CGAACCCTCGGTCCGTCT-GAT
* * * *
17486910 CATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTTAGC
* * * * * *
17486975 CGATCAGAGAGGCAGAATGCGCAAGCCGGAGG-TCGGCTCGGT-CCCCCTGCGTGCTGCCGATCC
66 CGACCGGAGAGGCAGAATGCGGAAG-CTGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
* *
17487038 TGCTA-CCGTAACCCTCGGTCTGCTTTGAT
130 TGCTACCCG-AACCCTCGGTCCG-TCTGAT
17487067 CTTAGAC-TGGGAATGAACTCCGTATGCCTA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA
17487097 GACTACGGAT
Statistics
Matches: 279, Mismatches: 55, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 62 0.22
158 94 0.34
159 112 0.40
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTTAGC
CGACCGGAGAGGCAGAATGCGGAAGCTGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCCGAACCCTCGGTCCGTCTGAT
Found at i:17487108 original size:26 final size:26
Alignment explanation
Indices: 17487079--17487148 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
17487069 TAGACTGGGA
17487079 ATGAACTCCGTATGCCTAGACTACGG
1 ATGAACTCCGTATGCCTAGACTACGG
*
17487105 ATGAACTTCGTATGCCTAGACTACGG
1 ATGAACTCCGTATGCCTAGACTACGG
17487131 ATGAACTCCGTATGCCTA
1 ATGAACTCCGTATGCCTA
17487149 AGTCAACCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
ATGAACTCCGTATGCCTAGACTACGG
Found at i:17487510 original size:185 final size:184
Alignment explanation
Indices: 17487302--17487665 Score: 478
Period size: 185 Copynumber: 2.0 Consensus size: 184
17487292 TTCGGCTGGG
* * *
17487302 GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAG
* * * * * * * * *
17487367 TCGATCGGAGAGGTAGAATGCATAAGTCAGGGATCGGCTCGGTCCCCCCCTGCGTGCTGCCGATC
66 CCGACCAGAGAGGTAGAATACATAAGCCAGGGATCAGCCCGGT-CCCCCCTGCGGGATGCCGATC
* * *
17487432 CTGCTACCGCAGCCCTCAGTTTGATCTGATCTTAGACT-GGGCATGAACTCCGTTT
130 CTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGA-TGGGGAATGAACTCCGTTT
* * *
17487487 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAG
* * * *
17487552 CCGGCCAGAGAGGTAGAATACGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGGGATGTCGATCC
66 CCGACCAGAGAGGTAGAATACATAAGCCAGGGATCAGCCCGGTCCCCCCTGCGGGATGCCGATCC
* * *
17487617 TGCTATCGCAACCTTCGGTCTGATCTGATCTTAGATGGGGAATGAACTC
131 TGCTACCGCAACCCTCAGTCTGATCTGATCTTAGATGGGGAATGAACTC
17487666 TGTATGCCTA
Statistics
Matches: 153, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 60 0.39
185 92 0.60
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAG
CCGACCAGAGAGGTAGAATACATAAGCCAGGGATCAGCCCGGTCCCCCCTGCGGGATGCCGATCC
TGCTACCGCAACCCTCAGTCTGATCTGATCTTAGATGGGGAATGAACTCCGTTT
Found at i:17488258 original size:26 final size:26
Alignment explanation
Indices: 17488220--17488272 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17488210 GGCTCAAAAT
17488220 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17488246 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17488272 C
1 C
17488273 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17488746 original size:158 final size:155
Alignment explanation
Indices: 17488246--17488746 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 155
17488236 ACTCCATATG
*
17488246 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
17488311 TAGCCGGAGAGGCAGAATGCGCAAGCAAGGGATCGGTTCGGTCCCCCCTGCGTACTATCAATCCT
66 CAGCCGGAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGGT-CCCCCTGCGTGCTATC-ATCCT
* *
17488376 GCTGCCGCAACCCTCGGT-TCAGTCTGAT
128 GCTACAGCAACCCTCGGTCT-AGTCTGAT
** * * * *
17488404 CTTAGAC-TGGGAATGAACTTTGTACGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** *
17488468 TCAGCCGAAGAGGAATAATGCCCAAGCCGGGGATCAGCCTAGTCCTCCTCTGCGTGCTGTCAGTC
65 CCAGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCC-CC-CTGCGTGCTATCA-TC
** * * **
17488533 CCACTACCA-CAA-CCTCGGTC-CGACTGGGG
126 CTGCTA-CAGCAACCCTCGGTCTAGTCT-GAT
* * * *
17488562 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **
17488627 CGGTGGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCACCTAG-GTGCTATCGATCC
66 CAGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCC-CCT-GCGTGCTATC-ATCC
*
17488691 TGCTACAGCAACCCTCGGTCTGGTCTGAT
127 TGCTACAGCAACCCTCGGTCTAGTCTGAT
*
17488720 CTTAGAC-TGGGAATGCACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17488747 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 26 0.10
158 214 0.80
159 23 0.09
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCTGCGTGCTATCATCCTGCT
ACAGCAACCCTCGGTCTAGTCTGAT
Found at i:17488783 original size:26 final size:26
Alignment explanation
Indices: 17488720--17488790 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
17488710 CTGGTCTGAT
* *
17488720 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
17488746 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
17488772 CTTAGACCGGGGATTGAAC
1 CTTAGACTGGGGA-TGAAC
17488791 GGGTGGTAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 36 0.88
27 5 0.12
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:17495338 original size:26 final size:26
Alignment explanation
Indices: 17495300--17495351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17495290 GGCTCAAAAT
17495300 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17495326 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
17495352 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17495670 original size:158 final size:160
Alignment explanation
Indices: 17495325--17495670 Score: 387
Period size: 160 Copynumber: 2.2 Consensus size: 160
17495315 AACTCTGTAT
* * *
17495325 GCTTAGACATGGAATGAACTCTGTATGTCTAAGCCAACCCACGAAACGAGCATCCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAG
**
17495390 CCGACAAGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCTCTGTGTGCTACCAAT
66 CCGACAAGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCTCTGCATGCTACCAAT
* *
17495455 CCCACTGCCACAACCCTCATTCCGACTGGG
131 CCCACTGCCACAACCCTCAGTCCGACTGGA
* * * * * *
17495485 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAG
* * * * ** *
17495550 CCGAC-CGGAGAGGTAGAATGCCCAAGAT-GTGGATCGGCCCGATCCCCCT-TGCATGCTACCGA
66 CCGACAAGGAGAGGCAGAATGCACAAG-TCGGGGATCAACCCGATCCCCCTCTGCATGCTACCAA
** ** * *
17495612 TCCTGCTGCTGCAACCCTCGGTCTGATCT-GA
130 TCCCACTGCCACAACCCTCAGTCCGA-CTGGA
*
17495643 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17495671 TCAGACTGGG
Statistics
Matches: 155, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 54 0.35
159 38 0.25
160 62 0.40
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCCAGGCACTCAG
CCGACAAGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCTCTGCATGCTACCAAT
CCCACTGCCACAACCCTCAGTCCGACTGGA
Found at i:17495891 original size:26 final size:26
Alignment explanation
Indices: 17495853--17495905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17495843 CCAGTCTGAT
17495853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17495879 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17495905 C
1 C
17495906 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17496360 original size:26 final size:26
Alignment explanation
Indices: 17496331--17496386 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
17496321 CCGATCCGAT
17496331 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** * *
17496357 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
17496383 CTTA
1 CTTA
17496387 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:17497547 original size:26 final size:26
Alignment explanation
Indices: 17497518--17497570 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497508 CCAGTCCGAT
*
17497518 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACTCCATATG
*
17497544 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCATATG
17497570 C
1 C
17497571 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:17498060 original size:26 final size:26
Alignment explanation
Indices: 17498019--17498071 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17498009 CTGGTTCGAT
17498019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17498045 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17498071 C
1 C
17498072 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17498542 original size:158 final size:158
Alignment explanation
Indices: 17498254--17498754 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 158
17498244 ACTTCGTATG
* ** * * * *
17498254 CTTAGACAT-GGAATGAAGTCTTTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAG
* * * ** * * * **
17498318 CCGGTCGGAGAGGCAGAATGCGTAAG-TTGGGCAAT-GGCCCGATCCCCCCTGCATACTGTCGAT
65 CCTGCCGGAGAGGCAGAATGCGCAAGCCAGGG--ATCGACCCGATCCCCCCTGCGTGCTACCGAT
* *
17498381 CCTGCTGCTGCAACTCTCAGTCCGGTCTGAT
128 CCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* * * * *
17498412 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAATGAGCGTTTGGGCGCTGAG-
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
* * * *
17498476 C-GACCGGAGAGGCATAATGTGCAAGTCAGGGATCGACCTGATCCCCCTCTGCGTGCTACCGATC
66 CTG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTACCGATC
* * *
17498540 CTGTTGCCACAACCCTC-GATCTGG-CTGGGA-
129 CTGCTGCCGCAACCCTCAG-TCCGGTCT--GAT
* * *
17498570 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTTAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAG
* * * *
17498634 CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGTATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
65 CCTGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
* * *
17498699 TACTGCCGTAACCCTCAGTCCAGTCTGAT
130 TGCTGCCGCAACCCTCAGTCCGGTCTGAT
*
17498728 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
17498755 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 53, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 37 0.13
158 189 0.69
159 45 0.16
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTGAGC
CTGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCAGTCCGGTCTGAT
Found at i:17498764 original size:26 final size:26
Alignment explanation
Indices: 17498728--17498780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17498718 CCAGTCTGAT
17498728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17498754 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17498780 C
1 C
17498781 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17498896 original size:709 final size:702
Alignment explanation
Indices: 17497515--17498865 Score: 1725
Period size: 709 Copynumber: 1.9 Consensus size: 702
17497505 GATCCAGTCC
17497515 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
* * * *
17497580 CCCACAGAACGAACGTGTGGGCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGTCGGGGACTGA
66 CCCACAGAACGAACGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGGGCAATGA
* * * * *
17497645 CTCGATCCCCCCTGCGTGCTATCGATCTTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACT
131 CCCGATCCCCCCTGCATACTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACT
*
17497710 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGCCGATCGAA
196 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGCCGACCGAA
* * *
17497775 GAGGCATAATGCGTAAACCAGGGATTAGCCCGGACCCCCTCTGCGTGCTGCCGATCCCGCTACCA
261 GAGGCATAATGCGCAAACCAGGGATTAGACCGGACCCCCTCTGCGTGCTACCGATCCCGCTACCA
* *
17497840 CAACCCTTGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
326 CAACCCTCGATCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
17497905 ACGGGTGAGCGGGTGCTCAACCGGTCGGAGAGACAAAATGCACAAACCGGGGATCGGCTCGGTCC
391 ACGGGCGAGCGGGCGCTCAACCGGTCGGAGAGACAAAATGCACAAACCAGGGATCGACCCGATCC
* *** * * **
17497970 CCCCTACTTGCTGTGGATTCTACTATCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGA
456 CCCCTACGTGCTGCCAATCCTACTACCGTAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGA
* *
17498035 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
521 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCG
* * *
17498100 GATGCTCAACCGACCGGAAAGGCTTGCCAGAGAGGTAGAATGCACAAGCCAGTGATCGACCTGGT
586 GACGCTCAA-CGACC----A-G--TGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCTGGT
17498165 CCCCCCTACGTGCTACCGATCCTACAGTTGGACCTGCTGCCGTAATCCTCGGTCCGGTTT
643 CCCCCCTACGTGCTACCGATCCTACAGTTGGACCTGCTGCCGTAATCCTCGGTCCGGTTT
* * * * **
17498225 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAGTCTTTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
* * * * ** * * *
17498290 CCCAC-GAAACTAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTTGGGCAATG
66 CCCACAG-AACGAACGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGGGCAATG
* * * * * * *
17498354 GCCCGATCCCCCCTGCATACTGTCGATCCTGCTGCTGCAACTCTCAGTCCGGTCTGATCTTAGAT
130 ACCCGATCCCCCCTGCATACTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGAC
* * * *
17498419 TGGGAATGAACTCCGTATGCCTAAGTCAACCCTCGAAATGAGCGTTTGGGCGCTGAG-CGACCGG
195 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGCCGACCGA
* ** * * * * *
17498483 AGAGGCATAATGTGCAAGTCAGGGA-TCGACCTGATCCCCCTCTGCGTGCTACCGATCCTGTTGC
260 AGAGGCATAATGCGCAAACCAGGGATTAGACCGGA-CCCCCTCTGCGTGCTACCGATCCCGCTAC
17498547 CACAACCCTCGATCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
324 CACAACCCTCGATCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * * * * * *
17498612 AAACGGGCGTGTGGGCGCTTAGCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGTATCGACCCGAT
389 AAACGGGCGAGCGGGCGCTCAACCGGTCGGAGAGACAAAATGCACAAACCAGGGATCGACCCGAT
* *
17498677 CCCCCCTGCGTGCTGCCAATCCTACTGCCGTAACCCTC-AGTCCAG-TCTGATCTTAGACTGGGA
454 CCCCCCTACGTGCTGCCAATCCTACTACCGTAACCCTCGA-TCCAGTTC-GATCTTAGACTGGGA
*
17498740 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCG
517 ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCG
* * * * * *
17498805 TGTGGGCGCTC-A-G-CC-G-GCCGGAGAGGCATAATGCACAAGCCGGGGATC-AGCTCGGTCCC
582 TGCGGACGCTCAACGACCAGTGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCT-GGTCCC
17498864 CC
646 CC
17498866 TTTGCGTGGT
Statistics
Matches: 549, Mismatches: 87, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
695 3 0.01
696 35 0.06
699 1 0.00
705 2 0.00
706 1 0.00
708 10 0.02
709 282 0.51
710 215 0.39
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (702 bp):
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
CCCACAGAACGAACGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGGGCAATGA
CCCGATCCCCCCTGCATACTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGCCGACCGAA
GAGGCATAATGCGCAAACCAGGGATTAGACCGGACCCCCTCTGCGTGCTACCGATCCCGCTACCA
CAACCCTCGATCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGGGCGAGCGGGCGCTCAACCGGTCGGAGAGACAAAATGCACAAACCAGGGATCGACCCGATCC
CCCCTACGTGCTGCCAATCCTACTACCGTAACCCTCGATCCAGTTCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCG
GACGCTCAACGACCAGTGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCTGGTCCCCCCTA
CGTGCTACCGATCCTACAGTTGGACCTGCTGCCGTAATCCTCGGTCCGGTTT
Found at i:17499128 original size:170 final size:164
Alignment explanation
Indices: 17498754--17499350 Score: 523
Period size: 170 Copynumber: 3.6 Consensus size: 164
17498744 ACTCCGTATG
* ** *
17498754 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17498819 CGGCCGGAGAGGCATAATGCACAAGCCGGGGATC-AGCTCGG-TCCCCCTTTGCGTGGTG-CTGA
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CTCGGTTCCCCC--TGCGTGCTGTC-GA
* *** **
17498881 TCCCATTATCGATCCTGCTACCACAACCCTCGGTCCAACTGGGG
127 T-CC--TAT-G-TCCTGCTACCACAACCCTCGTTCGGTCT-GAT
* * * * * *
17498925 CTTAGACAT-GGAATGAACTCCGTACGGCTAAGCCAACCCACGAAATGAGTGTGTGGGAGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17498989 CCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTTCCCCCTACGTGTTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTTCCCCCTGCGTGCTGTCGAT-C
*
17499054 TGCTACTGGTCCTGCTACCACAACCCTCGATTTGGTCTGAT
129 --CTA-T-GTCCTGCTACCACAACCCTCG-TTCGGTCTGAT
* * *
17499095 CTTAGACTGGGAATGAACTACGTCTGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * *
17499160 TGGCCAGAGAGGTAGAATGCGCAAGTCGGGGGCCGGCTCGATTCCCCCTGCGTGCTGTC-A----
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTTCCCCCTGCGTGCTGTCGATCCT
* * *
17499220 A--TCCTACTACCACAACCCTTGGTCCGGTCTGAT
131 ATGTCCTGCTACCACAACCC-TCGTTCGGTCTGAT
* * * *
17499253 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
17499318 CGACCGGAGAGGCAGAATGCGTAAGCCGAGGAT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGAT
17499351 AAGCTCGGTC
Statistics
Matches: 347, Mismatches: 69, Indels: 33
0.77 0.15 0.07
Matches are distributed among these distances:
158 107 0.31
159 2 0.01
162 1 0.00
169 2 0.01
170 133 0.38
171 93 0.27
172 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (164 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTTCCCCCTGCGTGCTGTCGATCCT
ATGTCCTGCTACCACAACCCTCGTTCGGTCTGAT
Found at i:17499357 original size:158 final size:158
Alignment explanation
Indices: 17499063--17499357 Score: 385
Period size: 158 Copynumber: 1.9 Consensus size: 158
17499053 CTGCTACTGG
* ** *
17499063 TCCTGCTACCACAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTACGTCTGCCTAAGC
1 TCCTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
* * * * * *
17499128 CAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGCCAGAGAGGTAGAATGCGCAAGTCGGGGGC
66 CAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGAC
**
17499193 CGGCTCGATTCCCCCTGCGTGCTGTCAA
131 AAGCTCGATTCCCCCTGCGTGCTGTCAA
* *
17499221 TCCTACTACCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAG
1 TCCTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTAC-GTATGCCTAAG
* * * * * *
17499285 CCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGA
65 CCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGA
*
17499350 TAAGCTCG
130 CAAGCTCG
17499358 GTCCTCCCTA
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
157 1 0.01
158 114 0.99
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
TCCTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGAC
AAGCTCGATTCCCCCTGCGTGCTGTCAA
Found at i:17499440 original size:26 final size:26
Alignment explanation
Indices: 17499401--17499454 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
17499391 GGTCCAATCT
* *
17499401 TAGATTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
17499427 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
17499453 TA
1 TA
17499455 ATCAACCCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:17500510 original size:25 final size:26
Alignment explanation
Indices: 17500462--17500514 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
17500452 GGTTCGATCA
17500462 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
**
17500488 TAGACTGGG-ATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
17500513 TA
1 TA
17500515 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:17501668 original size:158 final size:158
Alignment explanation
Indices: 17501372--17501685 Score: 337
Period size: 158 Copynumber: 2.0 Consensus size: 158
17501362 TGTCTGGCTA
* * * ** *
17501372 GGGCTTAGACATGGAATGAAGTTCGTATGCCTAAGCCAAACCATGAAATAAGCGTACGGGCGCTC
1 GGGCTTAGACATAGAATGAACTCCCCATGCCTAAGCCAAACCATGAAATAAGCGTACGGGAGCTC
* * * * * * * *
17501437 AATCAACTGGAGAGGTAGAGTGTGCAAGCTGAGGATTGACTCGGTCCCCCTCTGCATTCTGTCGG
66 AACCAACTGGAGAGGTAGAATGTACAAGCTGAGGATTGACCCGATCCCCCTATGCATGCTGTCGA
*
17501502 TCCACTGCCACAACCATCGGTCCGGTTG
131 TCCACTGCCACAACCATCAGTCCGGTTG
* ** * *
17501530 GGGCTTAGACATAGAATGAACTCCCCATGCCTAAGCCAACCCATGAAATGGGTGTACGGGAGCTT
1 GGGCTTAGACATAGAATGAACTCCCCATGCCTAAGCCAAACCATGAAATAAGCGTACGGGAGCTC
* * * *
17501595 AGCC-AGTCGGAGAGGTAGAAT-TCACAAGCTGGGGATTGACCCGAT-CCCCTATGCGTGCTGTC
66 AACCAACT-GGAGAGGTAGAATGT-ACAAGCTGAGGATTGACCCGATCCCCCTATGCATGCTGTC
* * *
17501657 GATCCTGCTGCCGCAACCCTCAGTCCGGT
129 GATCC-ACTGCCACAACCATCAGTCCGGT
17501686 CCCATCTTAG
Statistics
Matches: 126, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
157 21 0.17
158 105 0.83
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (158 bp):
GGGCTTAGACATAGAATGAACTCCCCATGCCTAAGCCAAACCATGAAATAAGCGTACGGGAGCTC
AACCAACTGGAGAGGTAGAATGTACAAGCTGAGGATTGACCCGATCCCCCTATGCATGCTGTCGA
TCCACTGCCACAACCATCAGTCCGGTTG
Found at i:17502296 original size:26 final size:26
Alignment explanation
Indices: 17502255--17502333 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17502245 TCGGTCTGAT
* *
17502255 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
**
17502281 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCGTATG
17502307 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
17502333 C
1 C
17502334 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:17503295 original size:26 final size:26
Alignment explanation
Indices: 17503249--17503326 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
17503239 AGCTCAAAAT
*
17503249 CTTAGAC-TGGGAAAGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
17503275 CTTGGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
17503301 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17503327 GCTAAGCCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 44 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17503812 original size:26 final size:26
Alignment explanation
Indices: 17503776--17503828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17503766 CTGGTCTGAT
17503776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17503802 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17503828 C
1 C
17503829 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17504280 original size:366 final size:353
Alignment explanation
Indices: 17503615--17504280 Score: 791
Period size: 366 Copynumber: 1.8 Consensus size: 353
17503605 GGTCCAGTTA
* * * * * *
17503615 GGGGTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTC
1 GGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATGCAGGCACTC
** *
17503680 AGCTGGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCTCCTGCGTGCTGTCGAT
66 AGCCAGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGAT
* * ** *
17503745 CCTACTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
131 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * ** *
17503810 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGCCACTCAACCGGTCGGA
196 GGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACAAGCATGCGAACACTCAACCGATCGGA
* * * *
17503875 GAGGCATAATGTGCAAGTCAAGGATCAACCCGATCCCCCTCTTCATGTTGCCGATCCCACTGCCG
261 GAGGCAGAATGCGCAAGCCAAGGACCAACCCGATCCCCCTCTTCATGTTGCCGATCCCACTGCCG
17503940 TCCTGCTGCCACAACCATCAGTTCGGCT
326 TCCTGCTGCCACAACCATCAGTTCGGCT
* * *
17503968 GGGGCTTAGACATGGTATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCATGCAGGTACT
1 GGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATGCAGGCACT
* * *
17504033 CAGCCAGCC-AGAAAGGCAGAATGCGTAAGCCGGGGATCGG-CCTGATCCCCCCTGTGTGCTGTC
65 CAGCCAGCCGA-AAAGGCAGAATGCGTAAGCCGAGGATCGGCCCAG-TCCCCCCTGCGTGCTGTC
* *
17504096 GATCCTGTTACTGGTTTGGCTACCGCAACCCTCGATCCATTTTGATCTTACACTGGGAATGAACT
128 GATCC---TAC-----T-G-T--CGCAACCCTCGATCCAGTCTGATCTTACACTGGGAATGAACT
* * * * *
17504161 CTGTATTCTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGTGAA
181 CCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACAAGCATGCGAA
* **
17504225 CGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCAACCCTG-TCCCCCT
245 CACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCAAGGACCAACCC-GATCCCCCT
17504281 TGTGTACTGT
Statistics
Matches: 256, Mismatches: 40, Indels: 21
0.81 0.13 0.07
Matches are distributed among these distances:
353 8 0.03
354 107 0.42
357 3 0.01
362 1 0.00
363 1 0.00
364 1 0.00
366 133 0.52
367 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
GGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCATGCAGGCACTC
AGCCAGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGAT
CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACAAGCATGCGAACACTCAACCGATCGGA
GAGGCAGAATGCGCAAGCCAAGGACCAACCCGATCCCCCTCTTCATGTTGCCGATCCCACTGCCG
TCCTGCTGCCACAACCATCAGTTCGGCT
Found at i:17504581 original size:158 final size:155
Alignment explanation
Indices: 17504348--17504786 Score: 346
Period size: 170 Copynumber: 2.7 Consensus size: 155
17504338 ATAAACTTTA
* * * * * * *
17504348 TATGCCTAA-CTCAACCCACGAAACAAGCGTACAGTCACTGAGCCTGTCGGAGAGGCATAATGCA
1 TATGCCTAAGC-CAACCCACAAAACGAGCGTGCGGGCACTCAGCCTGTCGGAGAGGCAGAAT--A
* *** * ** *
17504412 -CAGGTTAGGGATGACCCGGTTCCCCTCTACGTGTTACCGGTCCTACTGCCACAACCCTTGGTCT
63 TCAAGCCGGGGATGACCC-GATCCCC-CTACGTGTTACCGGTCCTACTGCCACAACCCACGGTCC
*
17504476 GACTGGGGCTTAGACATGGAATGAACTCCC
126 CACTGGGGCTTAGACATGGAATGAACTCCC
* * *
17504506 TATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAGTC-GATCGGAGAGGCAGAATGCA
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCTG-TCGGAGAGGCAGAAT--A
* * **
17504570 T-AAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGACAATCTCGCTGTCGATCCTGTTGCCAC
63 TCAAGCCGGGGATGA-CCCGAT-CCCCCTACGTG-T-----T-AC-C-G--G-TCCTACTGCCAC
* *
17504634 AACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTTCG
114 AACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTCCC
* * *
17504676 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGTCGGAGAGGTAGAATATGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCTGTCGGAGAGGCAGAATAT-C
* * * *
17504741 AAGCCGAGGATAGACCCGATCCCCCTACGTGCTACCGATCTTACTG
65 AAGCCGGGGAT-GACCCGATCCCCCTACGTGTTACCGGTCCTACTG
17504787 TTAGTCTGAC
Statistics
Matches: 221, Mismatches: 39, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
157 6 0.03
158 67 0.30
159 9 0.04
160 1 0.00
161 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 2 0.01
169 12 0.05
170 115 0.52
171 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCTGTCGGAGAGGCAGAATATCA
AGCCGGGGATGACCCGATCCCCCTACGTGTTACCGGTCCTACTGCCACAACCCACGGTCCCACTG
GGGCTTAGACATGGAATGAACTCCC
Found at i:17504761 original size:170 final size:168
Alignment explanation
Indices: 17504458--17504773 Score: 440
Period size: 170 Copynumber: 1.9 Consensus size: 168
17504448 CCGGTCCTAC
** **
17504458 TGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * *
17504523 ATAAAACGGGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCC
66 ACAAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCA-AAGCCGAGGATCAGCCC
17504588 GATCCCCCCTACGTGCTGACAATCTCGCTGTCGATCCTGT
130 GAT-CCCCCTACGTGCTGACAATCTCGCTGTCGATCCTGT
* *
17504628 TGCCACAACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 TGCCACAACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
17504693 ACGAAACGAGCGTGCGGGCGCTCAGCCTG-TCGGAGAGGTAGAATATGC-AAGCCGAGGAT-AGA
66 ACAAAACGAGCGTGCGGGCACTCAGCC-GATCGGAGAGGCAG-A-ATGCAAAGCCGAGGATCAG-
17504755 CCCGATCCCCCTACGTGCT
127 CCCGATCCCCCTACGTGCT
17504774 ACCGATCTTA
Statistics
Matches: 129, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
169 15 0.12
170 108 0.84
171 2 0.02
172 4 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (168 bp):
TGCCACAACCCACGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCAAAGCCGAGGATCAGCCCG
ATCCCCCTACGTGCTGACAATCTCGCTGTCGATCCTGT
Found at i:17505359 original size:26 final size:26
Alignment explanation
Indices: 17505323--17505375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17505313 CCGATTTGAT
17505323 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17505349 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
17505375 C
1 C
17505376 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17506575 original size:26 final size:26
Alignment explanation
Indices: 17506546--17506596 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17506536 GGCTCGATTG
17506546 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
17506572 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
17506597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:17507606 original size:157 final size:158
Alignment explanation
Indices: 17507286--17507646 Score: 408
Period size: 157 Copynumber: 2.3 Consensus size: 158
17507276 AACCCCATAT
* * * * *
17507286 GCTTAGACATGGAATGAACTCCGTATGCGTAAACCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCAGGCGCTAAG
* * * * * *
17507351 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCCATCCCCCCTACGTGCTGCCAATCC
* * * *
17507416 TACTGTCACAACCCTCGATTTGATCCGA
131 CACTGCCACAACCCTCGATTGGATCAGA
* * *
17507444 TCTTAGAC-TGGGAATGAACT-CGTATGCATAAGTCAACCCACGAAACAAGCGTGCAGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCAGGCGCTAA
* * * *
17507507 GCCGGTC-GAAGAGTCATAATGCGCAAGCCAGGGATCAGC-CCATCCCCCTCTGCGTGCTGCCAA
65 GCCGGCCAG-AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCCATCCCCC-CTACGTGCTGCCAA
* * *
17507570 TCCCGCTGCCACAACCCTCGATCTGGCT-AGG
128 TCCCACTGCCACAACCCTCGAT-TGGATCAGA
* *
17507601 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAA
17507647 TGGGCGTGTT
Statistics
Matches: 168, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 9 0.05
157 116 0.69
158 43 0.26
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCAGGCGCTAAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCCATCCCCCCTACGTGCTGCCAATCC
CACTGCCACAACCCTCGATTGGATCAGA
Found at i:17508218 original size:26 final size:26
Alignment explanation
Indices: 17508178--17508229 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17508168 TAATCTGATG
17508178 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* * *
17508204 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
17508230 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:17509511 original size:158 final size:158
Alignment explanation
Indices: 17509255--17509757 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 158
17509245 CCGACTGGGG
* *
17509255 CTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCATGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGT
* * * * *
17509320 CGGCTGGAA-AAGCAGAATGCACAAATCGAGGATCGATTCGGTCCCCCCAGCGTGCTGTCAATCC
66 CGG-TGGAAGAAGCAGAATGCGCAAGTCGGGGATCGAATCGGTCCCCCCTGCGTGCTGTCAATCC
*
17509384 TACTACCACAACCCTCGGTCCGGTCCGAT
130 TGCTACCACAACCCTCGGTCCGGTCCGAT
* * * * * *
17509413 CTTAGAC-TGGGAATGAACTCCGTATGTCTAGGTCAACCCATGAAACAAGCATGCGGGTGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * * * * *
17509477 TCGGTCGAAGATGCATAATGCGCAAGTCGGGGATC-AACCTAGTCCCCCTCTGCGTGCTGCCAGT
65 TCGGTGGAAGAAGCAGAATGCGCAAGTCGGGGATCGAATC-GGTCCCCC-CTGCGTGCTGTCAAT
* * * ** **
17509541 CCCGCAACCACAACCCTCAGTCCGGTTGGGG
128 CCTGCTACCACAACCCTCGGTCCGGTCCGAT
* * * ** * * *
17509572 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAATGAGTGTACGGATGCTCA-A
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGT
* * * * ** * * *
17509636 CTGACTGGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCCATC
66 C-G-GTGGAAGAAGCAGAATGCGCAAGTCGGGGATCGAATCGGTCCCCCCTGCGTGCTGTCAATC
** ** *
17509701 CTGCTGTCGTAACCCTCGGTCTGGTCCGAT
129 CTGCTACCACAACCCTCGGTCCGGTCCGAT
*
17509731 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17509758 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 71, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
157 7 0.03
158 87 0.33
159 137 0.52
160 33 0.12
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGT
CGGTGGAAGAAGCAGAATGCGCAAGTCGGGGATCGAATCGGTCCCCCCTGCGTGCTGTCAATCCT
GCTACCACAACCCTCGGTCCGGTCCGAT
Found at i:17509609 original size:159 final size:158
Alignment explanation
Indices: 17509232--17509616 Score: 425
Period size: 158 Copynumber: 2.4 Consensus size: 158
17509222 GTCCTGCTGT
** * *
17509232 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCAATG
1 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* * * * *
17509297 AAACGAGCATGCGGGTGCTCAGTCGGCTGGAAAAGCAGAATGCACAAATCGAGGATCGATTCGGT
66 AAACAAGCATGCGGGTGCTCAGTCGGCTCGAAAAGCAGAATGCACAAATCGAGGATCAACTCAGT
* * *
17509362 CCCCCCAGCGTGCTGTCAATCCTACTAC
131 CCCCCCAGCGTGCTGCCAATCCCACAAC
* ** ** * * *
17509390 CACAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGTCTAGGTCAACCCAT
1 CACAACCCTCAGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * *
17509454 GAAACAAGCATGCGGGTGTTGAGTCGG-TCGAAGATGCATAATGCGCAAGTCGGGGATCAAC-CT
65 GAAACAAGCATGCGGGTGCTCAGTCGGCTCGAA-AAGCAGAATGCACAAATCGAGGATCAACTC-
* * *
17509517 AGTCCCCCTCTGCGTGCTGCCAGTCCCGCAAC
128 AGTCCCCC-CAGCGTGCTGCCAATCCCACAAC
* *
17509549 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGTG
1 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
17509614 AAA
66 AAA
17509617 TGAGTGTACG
Statistics
Matches: 182, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 6 0.03
158 102 0.56
159 73 0.40
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACAAGCATGCGGGTGCTCAGTCGGCTCGAAAAGCAGAATGCACAAATCGAGGATCAACTCAGT
CCCCCCAGCGTGCTGCCAATCCCACAAC
Found at i:17509767 original size:26 final size:26
Alignment explanation
Indices: 17509731--17509783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17509721 CTGGTCCGAT
*
17509731 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17509757 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17509783 C
1 C
17509784 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17510215 original size:26 final size:26
Alignment explanation
Indices: 17510177--17510229 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17510167 GGCTCAAAAT
* *
17510177 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17510203 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17510229 C
1 C
17510230 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17510659 original size:158 final size:156
Alignment explanation
Indices: 17510202--17510652 Score: 389
Period size: 158 Copynumber: 2.9 Consensus size: 156
17510192 AATTCCGTAT
* *
17510202 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCAG-TCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGC-GCTCA
* * *
17510266 G-TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTAGCATGCTATCGA
65 GCT-GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCT-GCATGCTACCGA
*
17510330 TCCTGCCA-CAACCCTCGGTTCGGTCTAA
128 TCCTGCTACCAACCCTCGGTTCGGTCTAA
* ** ** * * * *
17510358 TCTTAGAC-TGGGAATGAACTCTGTATGTATAAGTCAACCCATGAAACGAGCGAGC-GGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * ** * **
17510421 AC-CAGTCGAAGAGGCACAATGCGTAAGCCGAAGATCGACTCAGA-CCCCCTCTGTGTGCTACCG
65 GCTGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CCGATCCCCC-CTGCATGCTACCG
* * * * **
17510484 GTCCCGCTGCCACAACCCTTGG-TCTGGT-TGGG
127 ATCCTGCT-AC-CAACCCTCGGTTC-GGTCT-AA
* * *
17510516 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
17510581 CTGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCTCCTGCATGCTGCCAATCC
66 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
*
17510646 TTCTACC
131 TGCTACC
17510653 GTAACCCCCG
Statistics
Matches: 220, Mismatches: 60, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
154 2 0.01
155 51 0.23
156 49 0.22
157 4 0.02
158 73 0.33
159 40 0.18
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCC
TGCTACCAACCCTCGGTTCGGTCTAA
Found at i:17511046 original size:21 final size:21
Alignment explanation
Indices: 17511022--17511084 Score: 108
Period size: 21 Copynumber: 3.0 Consensus size: 21
17511012 ATCCAACTGC
*
17511022 TGGTCCTGCTACTGCAACCCT
1 TGGTCCTGCTACCGCAACCCT
17511043 TGGTCCTGCTACCGCAACCCT
1 TGGTCCTGCTACCGCAACCCT
*
17511064 TGGTCCTACTACCGCAACCCT
1 TGGTCCTGCTACCGCAACCCT
17511085 CGATCCGATC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.16, C:0.41, G:0.17, T:0.25
Consensus pattern (21 bp):
TGGTCCTGCTACCGCAACCCT
Found at i:17511859 original size:26 final size:26
Alignment explanation
Indices: 17511822--17511873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17511812 TGATCCAATG
17511822 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
17511848 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
17511874 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17518347 original size:26 final size:26
Alignment explanation
Indices: 17518309--17518361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17518299 GGCTCAAAAT
*
17518309 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17518335 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17518361 C
1 C
17518362 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17519141 original size:12 final size:12
Alignment explanation
Indices: 17519124--17519155 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
17519114 CCCCGCTGTG
17519124 TGCTGCTGATCC
1 TGCTGCTGATCC
*
17519136 TGCTGCTGGTCC
1 TGCTGCTGATCC
17519148 TGCTGCTG
1 TGCTGCTG
17519156 CAACCCTCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.31, G:0.31, T:0.34
Consensus pattern (12 bp):
TGCTGCTGATCC
Found at i:17519215 original size:26 final size:26
Alignment explanation
Indices: 17519177--17519229 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17519167 CTGATCTGAT
17519177 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
17519203 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
17519229 C
1 C
17519230 CCCATGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:17519710 original size:27 final size:26
Alignment explanation
Indices: 17519680--17519733 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
17519670 CCTATCTGAT
*
17519680 CTTAGACTAGGATTGAACTCCTGTATG
1 CTTAGACTAGGAATGAACT-CTGTATG
*
17519707 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17519733 C
1 C
17519734 CTAAGGCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17519945 original size:514 final size:503
Alignment explanation
Indices: 17518979--17520158 Score: 1391
Period size: 514 Copynumber: 2.3 Consensus size: 503
17518969 TACCGGTCTG
* **
17518979 GCTA-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GCTAGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * *
17519043 CCCACAAAACGAGCGTGCGGGCACTCAGCTGGCCGGAGAAGCAGAATGCGCTAGTCGGGGATCGA
66 CCCACAAAACGGGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
* * * * *
17519108 CCTGGTCCCCGCTGTGTGCTG-CTGATCCTGCTGCTGGTCCTGCTGCTGCAACCCTCGGTCTGAT
131 CCCGGTCCCC-CTGCGTGCTGTC-GATCCTACTGCTGGTCCTACTGCCGCAACCCTCGGTCTGAT
*
17519172 CTGATCTTAGACTGGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCCCATGA
194 CTGATCTTAGACTAGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCCCATGA
** * * * * **
17519237 AACGAGTGTGTGGGCACTCAATCGATCGGAGTGGCATAACACGTAAGTCGAGGATCAACCCAGTC
259 AACGAGCATGCGGGCACTCAACCGACCGGAGTGGCAGAACACGTAAACCGAGGATCAACCCAGTC
* * ** *
17519302 CCCTCCTGCGCTGTCGATCCTGCTGCCATAACCCTCGATTCGATCTGGTCTTAGACTGGGAATGA
324 CCCTCCTGCGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATCTGACCTTAGACTAGGAATGA
* * *
17519367 ACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTGAGCCGATCGGAAAGGCATA
389 ACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGGCGCTGAGCCGACCGGAAAGGCATA
* * * *
17519432 ATACGCAAGTCGGGGATCGACCTTGGTCCCCCTCTACGTGTTGCCGGTCCC
454 ATACGCAAGCCGGGGATCGACC-GGGTCCCCCTCTACGTGCTGCCAGTCCC
* * *
17519483 GCT-GCCACAACCCTCGGTCCGGCTAGGGCTTAGACATCGAATGAACTCCCTGTGCCTAAGCCAA
1 GCTAGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * * *
17519547 CCCATGAAACGGGCGTGCGGGTGCTTA-CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG
66 CCCACAAAACGGGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
* * * *
17519611 CCCGGTCCCCTCTGCATGCTGTCGATCTTACTGCTGGTCTTACTGCCGCCACCCTCGGTCCT-AT
131 CCCGGTCCCC-CTGCGTGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGGT-CTGAT
* * * * *
17519675 CTGATCTTAGACTAGGATTGAACTCCTGTATGCTTAGACTTGGAATGAACTCTGTATGCCTAAGG
194 CTGATCTTAGACTAGGAATAAACTCC-ATATGCTTAGACATGGAATGAACTCCGTA----T---G
* * * * *
17519740 CACCCATGAAACGAGCATGCGGGCGCTCAGCC-AGCCGGAGTGGTAGAATACGTAAACCGGGGAT
251 C-CCCATGAAACGAGCATGCGGGCACTCAACCGA-CCGGAGTGGCAGAACACGTAAACCGAGGAT
* * ** * **
17519804 CGACCCGGTGCCTCCTTGTGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCTGACCTTA
314 CAACCCAGT-CC-CCTCCTGCGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATCTGACCTTA
*
17519869 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTGAGCCGAC
377 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGGCGCTGAGCCGAC
* ** ** * *
17519934 CGGAGAGGCATAATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAGTCCC
442 CGGAAAGGCATAATACGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGTCCC
* * * * * *
17519996 GCTAGCCACAATCATTGGTTCGGCTGGGGCTTAGACATGGAATGACCTCCCTATGCCTAACCCAA
1 GCTAGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
17520061 CCCACAAAACGGGCGTGCGCGTGCTCAGCTGGCCAGAAAGGCAGAATGCGCAAGTTGGGGATCGG
66 CCCACAAAACGGGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
* *
17520126 CTCGGTCCCCCTGCGTGCTGTCGATCCTGCTGC
131 CCCGGTCCCCCTGCGTGCTGTCGATCCTACTGC
17520159 CACAATCTTC
Statistics
Matches: 560, Mismatches: 99, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
503 102 0.18
504 107 0.19
508 1 0.00
511 3 0.01
512 54 0.10
513 28 0.05
514 226 0.40
515 39 0.07
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (503 bp):
GCTAGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGGGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
CCCGGTCCCCCTGCGTGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGGTCTGATCT
GATCTTAGACTAGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCCCATGAAA
CGAGCATGCGGGCACTCAACCGACCGGAGTGGCAGAACACGTAAACCGAGGATCAACCCAGTCCC
CTCCTGCGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATCTGACCTTAGACTAGGAATGAAC
TCCGTATGCCTAAGTCAACCCACAAAAGGAGCGTGCGGGCGCTGAGCCGACCGGAAAGGCATAAT
ACGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGTCCC
Found at i:17520079 original size:160 final size:157
Alignment explanation
Indices: 17519865--17520200 Score: 360
Period size: 160 Copynumber: 2.1 Consensus size: 157
17519855 CCGATCTGAC
* ** * * *
17519865 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAACCCAACCCACAAAAGGAGCGTGCGCGCGCTCAGC
* * * *
17519930 CGACCGGAGAGGCATAATGTGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGTC-AGT
66 CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GGT-CCCC-CTGCGTGCTGTCGA-T
17519993 CCCGCTAGCCACAATCATTGGTTCGGCTGGGG
127 CCCGCT-GCCACAATCATTGGTTCGGCTGGGG
* *
17520025 CTTAGAC-ATGGAATGACCTCCCTATGCCTAACCCAACCCACAAAACGG-GCGTGCGCGTGCTCA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAACCCAACCCACAAAA-GGAGCGTGCGCGCGCTCA
* * **
17520088 GCTGGCCAGAAAGGCAGAATGCGCAAGTTGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCC
64 GCCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCC
* * **
17520153 TGCTGCCACAATC-TTCGGTCCGGTCT-GAT
129 CGCTGCCACAATCATT-GGTTCGG-CTGGGG
*
17520182 CTTAGACTGGGAATGAACT
1 CTTAGACTAGGAATGAACT
17520201 TCGTATGCTC
Statistics
Matches: 147, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
156 2 0.01
157 32 0.22
158 20 0.14
159 6 0.04
160 83 0.56
161 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAACCCAACCCACAAAAGGAGCGTGCGCGCGCTCAGC
CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTGCGTGCTGTCGATCCCG
CTGCCACAATCATTGGTTCGGCTGGGG
Found at i:17520233 original size:26 final size:26
Alignment explanation
Indices: 17520185--17520234 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17520175 GTCTGATCTT
* *
17520185 AGACTGGGAATGAACTTCGTATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
*
17520211 AGACTGGGGATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
17520235 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:17520527 original size:37 final size:37
Alignment explanation
Indices: 17520486--17520560 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 37
17520476 ATTTTTTAAA
17520486 ATTTTTTTAGAAAGAGTTTTGTCCAC-AAATTTGGTAG
1 ATTTTTTTAGAAAGAGTTTTGTCC-CTAAATTTGGTAG
17520523 ATTTTTTTAGAAAGAGTTTTGTCCCTAAATTTGGTAG
1 ATTTTTTTAGAAAGAGTTTTGTCCCTAAATTTGGTAG
17520560 A
1 A
17520561 GGTGATCCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (37 bp):
ATTTTTTTAGAAAGAGTTTTGTCCCTAAATTTGGTAG
Found at i:17521306 original size:158 final size:156
Alignment explanation
Indices: 17520978--17521422 Score: 347
Period size: 158 Copynumber: 2.8 Consensus size: 156
17520968 AACTCCGTAT
*
17520978 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
17521043 CCAGTCGGAGAGGCAGATGTGCAAGTCAAGGATCAGTCGGTCCCCCCTGCGTGCTGTCGATCCTA
66 CCAGCCGGAGAGGCAAATGCGCAAGTCAAGGATCAGCCGATCCCCCCTGCGTGCTGTCGATCCCA
* * *
17521108 CTACCGCAACCCTCGGTCTGGTCTGA
131 CTACCACAACCCTCGGTCTCGACTGA
* * ** * ** * * *
17521134 TCGTAGAC-TGGGAATGAACTCTGTATGCATAATTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * ** ** *
17521198 GCTGGCCGTAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCCTTTGTGTGCTGTCGATC
65 GCCAGCCGGAGAGGCA-AATGCGCAAGTCAAGGATCAG-CCGATCCCCCCTGCGTGCTGTCGATC
* *
17521263 CCGCTACCACAACCCTCGGTC-CGACTGGG
128 CCACTACCACAACCCTCGGTCTCGACT-GA
* * * * * * * * *
17521292 GCTTAGACATGGAATGAACTCCTTATGCCTAGGCCAACCCA-TAAACGGGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * ** * *
17521356 TCGGTCAAAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCGATCCCCCTCTGAGTGCTATCGATC
66 CCAGCCGGAGAGGCA-AATGCGCAAGTCAAGGATCAG-CCGATCCCCC-CTGCGTGCTGTCGATC
17521421 CC
128 CC
17521423 GCTGCCAGTC
Statistics
Matches: 224, Mismatches: 59, Indels: 10
0.76 0.20 0.03
Matches are distributed among these distances:
155 1 0.00
156 63 0.28
157 73 0.33
158 86 0.38
159 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATACGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAAATGCGCAAGTCAAGGATCAGCCGATCCCCCCTGCGTGCTGTCGATCCCA
CTACCACAACCCTCGGTCTCGACTGA
Found at i:17521671 original size:26 final size:26
Alignment explanation
Indices: 17521633--17521685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17521623 CCAGTCCGAT
*
17521633 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17521659 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17521685 C
1 C
17521686 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17522154 original size:26 final size:26
Alignment explanation
Indices: 17522113--17522165 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17522103 CCAGTCCAAT
17522113 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17522139 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
17522165 C
1 C
17522166 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17523154 original size:159 final size:153
Alignment explanation
Indices: 17522711--17523190 Score: 392
Period size: 159 Copynumber: 3.0 Consensus size: 153
17522701 TGAACTTTGG
* * *
17522711 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCA
1 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-TGGCC-GAGAGGCAGAATGCGCA
* * * * * * *
17522776 AGCTGGGGATCGGCCCGGTCCCCCCTATGTGCTATCGATCCTGCTACCGCAACCCTTGGTCCGGT
64 AGCCGGGGATCGG-CCGGTCCCCTCTACGTGCTGTCGAT-CTGCTATCGCAACCCTCGGTCC-GA
* *
17522841 CTGATCTTAGACTGGGAATGAACTCCGT
126 CTGAGCTTAGACTGGGAATGAACTCCCT
* * ** * * ** * *
17522869 ATGCCTAAGTCAACCCACAAAATGAGCGTGCAAGCGATGAGTCGATCGAGGAGGCATAATGCGTA
1 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT-GGCCGA-GAGGCAGAATGCGCA
* * * * * **
17522934 AGCCGGGGATCGGTCCGGTCCCCCTCTACATGCTGTCGGTC-CCAATGCCACAACCAGCGGTCCG
64 AGCCGGGGATCGG-CCGGT-CCCCTCTACGTGCTGTCGATCTGCTAT--CGCAACCCTCGGTCCG
* *
17522998 ACTGGGGCTTAGACAT-TGAATGAACTCCCT
125 ACT-GAGCTTAGAC-TGGGAATGAACTCCCT
* * *
17523028 ATGCCTAAGCCAAGCCC-CGAAATGGGTGTGCGGGTGCTCAGATGGCCGGAGAGGCAGAATGCGC
1 ATGCCTAAGCCAA-CCCACGAAATGAGCGTGCGGGCGCTCAG-TGGCC-GAGAGGCAGAATGCGC
*
17523092 AAGCCGGGGATCGGCCAGGTCCCCTCTGCGTGCTGTCGATCTTGCTATCGCAACCTCTCGGTCCG
63 AAGCCGGGGATCGGCC-GGTCCCCTCTACGTGCTGTCGATC-TGCTATCGCAACC-CTCGGTCCG
* ** *
17523157 ATTCGATG-TTAGACTAAGAATGAACTCCAT
125 ACT-GA-GCTTAGACTGGGAATGAACTCCCT
17523187 ATGC
1 ATGC
17523191 TTAGACTAGG
Statistics
Matches: 248, Mismatches: 58, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 96 0.39
159 137 0.55
160 11 0.04
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (153 bp):
ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTGGCCGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCGGTCCCCTCTACGTGCTGTCGATCTGCTATCGCAACCCTCGGTCCGACTGAG
CTTAGACTGGGAATGAACTCCCT
Found at i:17524410 original size:158 final size:156
Alignment explanation
Indices: 17523910--17524410 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 156
17523900 ACTCCATATG
* *
17523910 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTACGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTG-GCGTACGGGCGCTCAG
* * * * * *
17523974 TCGACCGAAGAGTCAGAATACGCAAGT-CGGGGATCGGCTTGGTCCCCCCTGCGTGCTGTCGATC
65 CCGGCCGAAGA-TCAGAATGCGCAA-TCCGGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGATC
* *
17524038 CTGCTGCCACAACCGTCGGTCTGGTCCTAT
128 CTGCTGCCGCAACCCTCGGTCTGGT-CTAT
* * * * * * * ** *
17524068 CTTAGAC-TGGGAATGACCTCCGTATTCATAAGTCAACCTACGAAA-TAAGCGTGCGGGCATTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACT-GGCGTACGGGCGCTCA
* * * * * **
17524131 GCCGGCCAAAGAGGT-ATAATGCACAAGCCGGGGATCGGC-CTGATCCCCCTCTGTGTGCTACCG
64 GCCGGCCGAAGA--TCAGAATGCGCAATCCGGGGATCGGCTC-GATCCCCCT-TGCGTGCTGTCG
* ** * *
17524194 GTCCCACTGTCGCAACCCTCGATCTGG-CT-T
125 ATCCTGCTGCCGCAACCCTCGGTCTGGTCTAT
* * *
17524224 GGGCTTAGACATGGAATGAAATCC-TATGCCTAAGCCAACCCACGAAACTGGCCTCCGGGCGCTC
1 ---CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTGGCGTACGGGCGCTC
* *
17524288 AGCCGGTCGAAGATACAGAATGTGCAATCCGGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGAT
63 AGCCGGCCGAAGAT-CAGAATGCGCAATCCGGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGAT
* *
17524353 CCTGCTACCGTAACCCTCGGTCTGGTCTAAT
127 CCTGCTGCCGCAACCCTCGGTCTGGTCT-AT
17524384 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17524411 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 61, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
156 3 0.01
157 50 0.19
158 157 0.60
159 50 0.19
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTGGCGTACGGGCGCTCAGC
CGGCCGAAGATCAGAATGCGCAATCCGGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCTGGTCTAT
Found at i:17524420 original size:26 final size:26
Alignment explanation
Indices: 17524384--17524435 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17524374 CTGGTCTAAT
17524384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17524410 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17524436 ACTAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17524780 original size:26 final size:26
Alignment explanation
Indices: 17524750--17524802 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17524740 CCGGTATGAT
17524750 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
17524776 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17524802 C
1 C
17524803 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17525286 original size:26 final size:26
Alignment explanation
Indices: 17525250--17525302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17525240 CCGGTCCGAT
17525250 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17525276 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17525302 C
1 C
17525303 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17526522 original size:26 final size:26
Alignment explanation
Indices: 17526471--17526523 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17526461 CTGGTTTAAT
**
17526471 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17526497 CTTAGACTGAGG-ATGAGCTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
17526523 C
1 C
17526524 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17526926 original size:158 final size:159
Alignment explanation
Indices: 17526637--17527220 Score: 599
Period size: 158 Copynumber: 3.7 Consensus size: 159
17526627 TGCTGTCGGC
* * * * * *
17526637 CCTGCTGCCACAAGCCTCGGTCCGG-CTAGGGCTTAGACATGGAATGAACTTCATATGCCTAAGC
1 CCTGCTGCCACAACCCTCGATCCGGTCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
* * * * *
17526701 CAACCCAAGAAACGAGCGTGCGGGCGCTTAGCCGGCTGGAGAGGCAGAATGCGCAAG-TCGGGCA
66 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGA
* *
17526765 TCGACCCGGTCCCCCCTGCATGATGTCGAT
130 TCGACCCGGTCCCCCCTGCATGCTATCGAT
*
17526795 CCTGCTGCCACAACCCTCGATCCGGTCT-GATCTTAGAC-TGAGAATGAACTCCGTATGCCTAAG
1 CCTGCTGCCACAACCCTCGATCCGGTCTAGAGCTTAGACATG-GAATGAACTCCGTATGCCTAAG
* * * * * *
17526858 TCAACCCATGAAATGAACGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGA
65 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGA
* * *
17526923 TCGACCCAGTCCCCCTCAGCGTGCTATCGAT
130 TCGACCCGGTCCCCC-CTGCATGCTATCGAT
* * * * * ** * *
17526954 CCCGCTACCACAACCCTCGATCTGGT-TGGGGCTTAGACATGGAAAAAACTCCCTATGCCTAAGG
1 CCTGCTGCCACAACCCTCGATCCGGTCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
* * * * ** ** *
17527018 CAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGAGAT
66 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGAT
* * ** * *
17527083 TGGCTTGGT-CCCCCTGCCTGCTACCGAT
131 CGACCCGGTCCCCCCTGCATGCTATCGAT
* * *
17527111 CCTGCTGCCTCAACCCTCGATCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
1 CCTGCTGCCACAACCCTCGATCCGGTCTAGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* **
17527174 TCAACCCATGAAACGAGCGTGCTGGCGCTCAGCCGACAAGAGAGGCA
65 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
17527221 AGATGGGCAA
Statistics
Matches: 346, Mismatches: 72, Indels: 17
0.80 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 100 0.29
158 123 0.36
159 120 0.35
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
CCTGCTGCCACAACCCTCGATCCGGTCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGAT
CGACCCGGTCCCCCCTGCATGCTATCGAT
Found at i:17527217 original size:157 final size:156
Alignment explanation
Indices: 17526637--17527242 Score: 603
Period size: 159 Copynumber: 3.8 Consensus size: 156
17526627 TGCTGTCGGC
* * ** * * *
17526637 CCTGCTGCCACAAGCCTCGGTCCGG-CTAGGGCTTAGACATGGAATGAACTTCATATGCCTAAGC
1 CCTGCTGCCACAACCCTCGATCCGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGT
* * * *
17526701 CAACCCAAGAAACGAGCGTGCGGGCGCTTAGCCGGCTGGAGAGGCAGAATGCGCAAGTC-GGGCA
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGAC-GGAGAGGCAGAATGCGCAAGCCAGGG-A
* *
17526765 TCGACCCGGTCCCCCCTGCATGATGTCGAT
128 TCGACCCGGT-CCCCCTGCATGCTATCGAT
17526795 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGT
1 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACATG-GAATGAACTCCGTATGCCTAAGT
* * * * * * **
17526859 CAACCCATGAAATGAACGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGAT
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CGGAGAGGCAGAATGCGCAAGCCAGGGAT
* *
17526924 CGACCCAGTCCCCCTCAGCGTGCTATCGAT
129 CGACCCGGTCCCCCT--GCATGCTATCGAT
* * * ** ** * *
17526954 CCCGCTACCACAACCCTCGATCTGGT-TGGGGCTTAGACATGGAAAAAACTCCCTATGCCTAAGG
1 CCTGCTGCCACAACCCTCGATCCGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGT
* * * * * *
17527018 CAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGAGAT
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GACGGAGAGGCAGAATGCGCAAGCCAGGGAT
* * ** * *
17527083 TGGCTTGGTCCCCCTGCCTGCTACCGAT
129 CGACCCGGTCCCCCTGCATGCTATCGAT
* *
17527111 CCTGCTGCCTCAACCCTCGATCCGATCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
1 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGT
* * * *
17527175 CAACCCATGAAACGAGCGTGCTGGCGCTCAGCCGACAAGAGAGGCA-AGATGGGCAAGCCAAGGA
65 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGAC-GGAGAGGCAGA-ATGCGCAAGCCAGGGA
17527239 TCGA
128 TCGA
17527243 ACGAGTGATA
Statistics
Matches: 363, Mismatches: 72, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
156 4 0.01
157 119 0.33
158 110 0.30
159 127 0.35
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGTC
AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACGGAGAGGCAGAATGCGCAAGCCAGGGATCG
ACCCGGTCCCCCTGCATGCTATCGAT
Found at i:17527242 original size:316 final size:317
Alignment explanation
Indices: 17526665--17527242 Score: 786
Period size: 316 Copynumber: 1.8 Consensus size: 317
17526655 GGTCCGGCTA
** * *
17526665 GGGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTT
1 GGGCTTAGACATGGAAAAAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTC
* * * **
17526730 AGCCGGCTGGAGAGGCAGAATGCGCAAGTCGGGCATCGACCCGGTCCCCCCTGCATGATGTCGAT
66 AACCGGCTGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCGGTCCCCCCTGCATGATACCGAT
*
17526795 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTC
131 CCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTC
* * * ** ***
17526860 AACCCATGAAATGAACGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGATC
196 AACCCATGAAACGAACGTGCGGGCGCTCAGCCGACAAGAAAGGCATAATGCGCAAGCCAAGGATC
17526925 GACCCAGTCCCCCTCAGCGTGCTATCGATCCCGCTACCACAACCCTCGATCTGGTTG
261 GACCCAGTCCCCCTCAGCGTGCTATCGATCCCGCTACCACAACCCTCGATCTGGTTG
* * * * *
17526982 GGGCTTAGACATGGAAAAAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCGTGCGGGTGCTC
1 GGGCTTAGACATGGAAAAAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTC
* * ** * *
17527047 AACCGG-TCGGAGAGGCAGAATGCGCAAGCCAGAG-ATTGGCTTGGT-CCCCCTGCCTGCTACCG
66 AACCGGCT-GGAGAGGCAGAATGCGCAAGCC-GAGCATCGACCCGGTCCCCCCTGCATGATACCG
* *
17527109 ATCCTGCTGCCTCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
129 ATCCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
* * * *
17527174 TCAACCCATGAAACGAGCGTGCTGGCGCTCAGCCGACAAGAGAGGCA-AGATGGGCAAGCCAAGG
194 TCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGACAAGAAAGGCATA-ATGCGCAAGCCAAGG
17527238 ATCGA
258 ATCGA
17527243 ACGAGTGATA
Statistics
Matches: 223, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
315 1 0.00
316 131 0.59
317 89 0.40
318 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (317 bp):
GGGCTTAGACATGGAAAAAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTC
AACCGGCTGGAGAGGCAGAATGCGCAAGCCGAGCATCGACCCGGTCCCCCCTGCATGATACCGAT
CCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTC
AACCCATGAAACGAACGTGCGGGCGCTCAGCCGACAAGAAAGGCATAATGCGCAAGCCAAGGATC
GACCCAGTCCCCCTCAGCGTGCTATCGATCCCGCTACCACAACCCTCGATCTGGTTG
Found at i:17533464 original size:26 final size:26
Alignment explanation
Indices: 17533413--17533465 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17533403 GGCTCAAAAT
*
17533413 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17533439 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17533465 C
1 C
17533466 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17533876 original size:26 final size:26
Alignment explanation
Indices: 17533847--17533897 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17533837 CGATCCGATC
17533847 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
* *
17533873 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
17533898 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:17534277 original size:26 final size:26
Alignment explanation
Indices: 17534227--17534278 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534217 CCGGTCTGAT
**
17534227 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17534253 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17534279 TCAAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17534461 original size:26 final size:26
Alignment explanation
Indices: 17534410--17534462 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534400 TCGGTCCGAT
*
17534410 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17534436 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17534462 C
1 C
17534463 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17534817 original size:26 final size:26
Alignment explanation
Indices: 17534766--17534818 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534756 CCGGTCTGAT
* *
17534766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
17534792 CTTAAACTGGGGATGAACTCTATATG
1 CTTAAACTGGGAATGAACTCCATATG
17534818 C
1 C
17534819 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:17535074 original size:367 final size:356
Alignment explanation
Indices: 17534252--17535223 Score: 997
Period size: 355 Copynumber: 2.7 Consensus size: 356
17534242 AACTTTGTAT
* * * * * * *
17534252 GCTTAGACATGGAATGAACTCCGTATGTCAAAGCCAACCCATGAAAT-ACGCATACAGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTCA
* * * * * * * * * *
17534316 GCCGGGCGGAGAGGCAGAATGTGCAAGTCGGGGACCGACCCGGT-CCCCTTGCGAGCTGTCGATC
65 GCCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * * * **
17534380 CTACTGTCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTG
130 CTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * ** *
17534445 GGGATTAACTCCGTATGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGCACTCAGCCAACTGAAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCAGCCAACCAAAA
* ** *
17534510 AGGCTAGCCGGAGAGGCATAATGCACAAGCCGGGGATCGATCAGATCCCCCTCTGCGTGTTGCCA
260 AGGCGAGCCAAAGAGGCATAATGCACAAGCCGGGGATCGACCAGATCCCCCTCTGCGTGTTGCCA
* * *
17534575 GTCCCACTGCCATAACCCTTGGTCCGGCTGGG
325 GTCCCACTGCCATAACCCTCGATCCGACTGGG
* * * *
17534607 GCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GATGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCA
* * * *
17534671 GCTGGTCGAAAAAGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
65 GCCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * *
17534736 CTGCTGTCGGAACCCTCCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTG
130 CTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
** * * *
17534801 GGGATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGCGCTCA-CCTACCAAAA
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCAGCCAACCAAAA
** * * * *
17534865 AGGCCGA-CCAAAGAGGCATAATGTGCAAGCCGGGGATC-AGCCCGGTCTCCCTTTGCGTGCTGT
260 AGG-CGAGCCAAAGAGGCATAATGCACAAGCCGGGGATCGA-CCAGATCCCCCTCTGCGTG-T-T
* ** *
17534928 CGATCCTGCTGTCGATCTTGCTGCCATAATCCTCGATCCGACTGGG
321 -G---C--CAGTC---C-CACTGCCATAACCCTCGATCCGACTGGG
* * *
17534974 GCTTAGATAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
17535039 CCGATCGAAAAGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCATGCTGTTGATC
66 CCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * * *
17535104 CTGCTG-CTGCAACCCTCGGTCTGGTCTGGTATTAGACTGGGAATGAACTTCGTATGCTTAGACA
130 CTGCTGTC-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-
* * * * * *
17535168 T-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCATTCAG
193 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCAG
17535224 TCGACCAGAG
Statistics
Matches: 501, Mismatches: 94, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
354 2 0.00
355 133 0.27
356 124 0.25
357 1 0.00
358 1 0.00
361 1 0.00
363 4 0.01
366 1 0.00
367 121 0.24
368 112 0.22
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (356 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTCAGCCAACCAAAAA
GGCGAGCCAAAGAGGCATAATGCACAAGCCGGGGATCGACCAGATCCCCCTCTGCGTGTTGCCAG
TCCCACTGCCATAACCCTCGATCCGACTGGG
Found at i:17535165 original size:26 final size:26
Alignment explanation
Indices: 17535135--17535186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535125 TGGTCTGGTA
*
17535135 TTAGAC-TGGGAATGAACTTCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
17535161 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
17535187 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:17535643 original size:26 final size:26
Alignment explanation
Indices: 17535602--17535654 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535592 CCAGTCTGAT
17535602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17535628 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17535654 C
1 C
17535655 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17535829 original size:26 final size:26
Alignment explanation
Indices: 17535785--17535837 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535775 TCGATCTAAT
* *
17535785 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
17535811 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17535837 C
1 C
17535838 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17536693 original size:26 final size:26
Alignment explanation
Indices: 17536664--17536715 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17536654 TCAGTCTGAT
*
17536664 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
17536690 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17536716 TGTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17537062 original size:26 final size:26
Alignment explanation
Indices: 17537033--17537085 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17537023 CCGGTCTGAT
* *
17537033 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTACGTATG
17537059 CTTAGACATGGAATAAACTACGTATG
1 CTTAGACATGGAATAAACTACGTATG
17537085 C
1 C
17537086 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTACGTATG
Found at i:17537099 original size:185 final size:184
Alignment explanation
Indices: 17536873--17537243 Score: 492
Period size: 185 Copynumber: 2.0 Consensus size: 184
17536863 TCCAGCTAGG
* * * *
17536873 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGGGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACAG
* * * *
17536938 CCGACCGGAGAGGTAGAATGTACAAGCCGAGGATCGGCCCAATCCCCTCCTGCGTGCTATCGATC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAAT-CCCTCCTGCGTGCTATCAATC
* * * *
17537003 CTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAACGAACTCCATAT
* * * *
17537058 GCTTAGACATGGAATAAACTAC-GTATGCCTAAGCTAACCCACGAAACGAGCGTATGGGTGCACA
1 GCTTAGACATGGAATAAACT-CTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACA
* * * * * *
17537122 GCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCAGTCCCTTCTGTGTGCTGTCAATC
65 GCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCTCCTGCGTGCTATCAATC
** *
17537187 CTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCATAT
130 CTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAACGAACTCCATAT
17537242 GC
1 GC
17537244 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
184 67 0.42
185 92 0.57
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCACAG
CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCTCCTGCGTGCTATCAATCC
TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAACGAACTCCATAT
Found at i:17537339 original size:343 final size:350
Alignment explanation
Indices: 17536874--17537612 Score: 807
Period size: 355 Copynumber: 2.1 Consensus size: 350
17536864 CCAGCTAGGG
* *
17536874 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGGGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * *
17536938 CCGACCGGAGAGGTAGAATGTACAAGCCGAGGATCGGCCCAATCCCCTCCTGCGTGCTATCGAT-
65 CCGACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCAATCCCCACCTACGTGCTACCGATC
* * *
17537002 C-CTGCT-G-C-C-A-CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
130 CACTGCTGGCCACTACCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCT
* * * *
17537061 TAGACATGGAATAAACTAC-GTATGCCTAAGCTAACCCACGAAACGAGCGTATGGGTGCACAGCC
195 TAGACATGGAATAAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCACAACC
* * * * **
17537125 GACCAGAGAGGCAGAATGCACAAGCCGGGGATCG-GTCCAGTCCCTTCTGTGTGCTGTCAATCCT
259 GACCAGAGAGGCAAAATGCACAAGCCGGGGACCGACTCCA-TCCC-CCTACGTGCTGTCAATCCT
*
17537189 GCTACCGTAACCCTCGGTCC-GGTCCGAT
322 GCTACCGCAACCCTCGGTCCTGGTCCGAT
* ** * * *
17537217 CTTAGACTGGGAACGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * ** * * *
17537282 TGGCCGGAGAGGTAGAATGCGCAAGTTGGGGATCGGTCCGATCCCCACCTACGTGCTACCGATCC
66 CGACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCAATCCCCACCTACGTGCTACCGATCC
* * * *
17537347 TACTGCTGGTCCTACTACCGCAAGCCTCGGTCCGATCTGATTTTAGATTAGGAATGAACTCCATA
131 -ACTGCTGG-CC-ACTA-C-CAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATA
* * * * * *
17537412 TGCTTAGACATGGAATGAACTCTGTTTGCCTAGGCCAACCCACGAAATGAGCTTACGGGCGCTCA
191 TGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCACA
** * * * * ** *
17537477 ACCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGACCGACTCGATCCCCCTACGTGCTGTTGATCT
256 ACCGACCAGAGAGGCAAAATGCACAAGCCGGGGACCGACTCCATCCCCCTACGTGCTGTCAATCC
* *
17537542 TGCTGCCGCAACCCTCGGTCCTGGTCTGAT
321 TGCTACCGCAACCCTCGGTCCTGGTCCGAT
* *
17537572 CTTAGATTGGGAATGAACTCTGTATGCCTAATTCAACCCAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
17537613 AAAATGAAAA
Statistics
Matches: 319, Mismatches: 61, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
342 1 0.00
343 106 0.33
344 1 0.00
346 5 0.02
347 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
354 32 0.10
355 167 0.52
356 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (350 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCAATCCCCACCTACGTGCTACCGATCC
ACTGCTGGCCACTACCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCTT
AGACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCACAACCGA
CCAGAGAGGCAAAATGCACAAGCCGGGGACCGACTCCATCCCCCTACGTGCTGTCAATCCTGCTA
CCGCAACCCTCGGTCCTGGTCCGAT
Found at i:17537924 original size:26 final size:26
Alignment explanation
Indices: 17537888--17537940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17537878 CCGGTCTGAT
17537888 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17537914 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17537940 C
1 C
17537941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17538428 original size:159 final size:156
Alignment explanation
Indices: 17538052--17538453 Score: 405
Period size: 158 Copynumber: 2.5 Consensus size: 156
17538042 CCTGCTACCA
* * * *
17538052 GTCCTGCTGCCACAACCCTCGGTTCGACTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTTGGTCCG-GTTGGGCTT-GACATTGAATGAACTCTGTATGCCTAAG
* * * * * *
17538117 CCAGCCCATGAAACGAGTGTGCAGGCGCTCAGCCAGTCGGAGAGGTAGAATACGCAAGTCGAGGA
64 CCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCGGAGAGGTAGAATACGCAAGCCGAGGA
17538182 TCGACCCGATCCCCCTTACGTGCTGTCG
129 TCGACCCGATCCCCCTTACGTGCTGTCG
* * ** * ** * *
17538210 ATCCTGCTACCGTAACCCTTGGTCTGGTCTGATCTT-AGATTGGGAATGAACACTGTATGCCTAA
1 GTCCTGCTGCCACAACCCTTGGTCCGGT-TGGGCTTGACATT--GAATGAACTCTGTATGCCTAA
* * * * * ** * *
17538274 GTCAACACACGAAATGAGCGTACGGGCGCTGAGCCTA-CCGGAGAGGTATCATGCTCAAGCC-AG
63 GCCAACCCACGAAACGAGCGTACAGGCGCTCAGCC-AGCCGGAGAGGTAGAATACGCAAGCCGAG
* *
17538337 AGATCGGCCCGATCCTCCTCTACGTGCTGTCG
127 -GATCGACCCGATCCCCCT-TACGTGCTGTCG
**
17538369 GTCCTGCTGCCACAACCCTTGGTCCGGTTAGGGCTTGGACATTGAATGAACTCCCTATGCCTAAG
1 GTCCTGCTGCCACAACCCTTGGTCCGGTT-GGGCTT-GACATTGAATGAACTCTGTATGCCTAAG
17538434 CCAACCCACGAAACGAGCGT
64 CCAACCCACGAAACGAGCGT
17538454 GCGGATGCTC
Statistics
Matches: 191, Mismatches: 44, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.02
157 3 0.02
158 105 0.55
159 76 0.40
161 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (156 bp):
GTCCTGCTGCCACAACCCTTGGTCCGGTTGGGCTTGACATTGAATGAACTCTGTATGCCTAAGCC
AACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCGGAGAGGTAGAATACGCAAGCCGAGGATC
GACCCGATCCCCCTTACGTGCTGTCG
Found at i:17540326 original size:26 final size:26
Alignment explanation
Indices: 17540297--17540349 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540287 CCGGTCTGAT
17540297 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * * *
17540323 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17540349 C
1 C
17540350 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17540701 original size:26 final size:26
Alignment explanation
Indices: 17540663--17540715 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540653 CTGGTCTGAT
17540663 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17540689 CTTAGA-TATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17540715 C
1 C
17540716 CTAGCCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17540990 original size:157 final size:160
Alignment explanation
Indices: 17540701--17541105 Score: 368
Period size: 157 Copynumber: 2.6 Consensus size: 160
17540691 TAGATATGGA
* *
17540701 ATGAACTCCGTATGCCTAGCCAACCCATGAAACGAGCGTGCGGGAGCGTTCAGCCGGCCGGAGAG
1 ATGAACTCCGTATGCCTAGCCAACCCATGAAACGAGCGTGCGGGAGCGCTCAGCCGACCGGAGAG
* * ** ** ** * * *
17540766 GTTAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCTCCTGTGCGCTGTCGATCTTATTGTCGCA
66 GTCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCTCCTACGCGCTACCGATCCCACTGCCACA
17540831 ACCCCTCGATCCGGTCCACCTTAGACTGAG
131 ACCCCTCGATCCGGTCCACCTTAGACTGAG
* * *
17540861 ATGAACTCTGTATGCCTACGTCAACCCATGAAAACGAGCGTGC-GG-GCGCTGAGCCGACCGGA-
1 ATGAACTCCGTATGCCTA-GCCAACCCATG-AAACGAGCGTGCGGGAGCGCTCAGCCGACCGGAG
* * * *
17540923 AGG-CATAATG-GCAAGCCGAGGATCGGCTCGGTCCCC-CTCTACGTGCTACCGGTCCCACTGCC
64 AGGTCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCTC-CTACGCGCTACCGATCCCACTGCC
* * * *
17540985 ACAA-CCCTCGCTCCAG-CTAGGGCTTAGACATG-G
128 ACAACCCCTCGATCCGGTCCA--CCTTAGAC-TGAG
* * * * *
17541018 AATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AG-GTGTGCGG-GTGCTCAGCCGATCAGA
1 -ATGAACTCCGTATGCCT-AGCCAACCCATGAAACGAGCGTGCG-GGAGCGCTCAGCCGACCGGA
*
17541080 GAGG-CAGAATGCGCAAGCCGGGGATC
63 GAGGTCAGAATGCGCAAGCCGAGGATC
17541106 CCGGTCCACG
Statistics
Matches: 199, Mismatches: 34, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
155 5 0.03
156 13 0.07
157 68 0.34
158 41 0.21
159 17 0.09
160 31 0.16
161 12 0.06
162 12 0.06
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (160 bp):
ATGAACTCCGTATGCCTAGCCAACCCATGAAACGAGCGTGCGGGAGCGCTCAGCCGACCGGAGAG
GTCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCTCCTACGCGCTACCGATCCCACTGCCACA
ACCCCTCGATCCGGTCCACCTTAGACTGAG
Found at i:17541220 original size:26 final size:26
Alignment explanation
Indices: 17541170--17541221 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17541160 TGGTCTGATG
*
17541170 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
17541196 TTAGACTTGGG-ATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
17541222 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:17549240 original size:26 final size:26
Alignment explanation
Indices: 17549211--17549261 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17549201 CGATCCGATC
17549211 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCGTATGT
* *
17549237 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
17549262 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:17549624 original size:26 final size:26
Alignment explanation
Indices: 17549580--17549631 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
17549570 CCGGTCTGAT
17549580 CTTAGACTGGGAATGAACTT-GTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17549605 CTTAGACAT-GGACATGAACTTCGTATG
1 CTTAGAC-TGGGA-ATGAACTTCGTATG
17549632 TCAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 10 0.42
26 9 0.38
27 5 0.21
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17550547 original size:26 final size:26
Alignment explanation
Indices: 17550517--17550568 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17550507 TGGTCTGGTA
17550517 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
17550543 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
17550569 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:17550707 original size:184 final size:184
Alignment explanation
Indices: 17550357--17550726 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
17550347 TTCGACTGGG
* * *
17550357 GCTTAGATAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
* * * * *
17550422 CGATCGAAAACGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCATGCTGTTGATCC
66 CGACCGAAAACGCAGAATGCACAAGCCGGGGATCGGCCAGATCCCCCACCGCATGCTGTCGATCC
** * * * * * *
17550487 TGCTGCTGCAACCCTCGATCTGGTCTGGTATTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTAGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
* * *
17550541 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGTTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA-
* * * * * * *
17550606 TCGACC-AGAGAGGCAGAATGCACAAGCTGGGGTTTGGCCAGATCCCCC-CCGCGTGCTGTCGAT
65 ACGACCGA-AAACGCAGAATGCACAAGCCGGGGATCGGCCAGATCCCCCACCGCATGCTGTCGAT
* * * *
17550669 CTTGCTGCCACAACACTTAG-TCCGATCCGATCTTAGACTTGGAATGAACTCCATAT
129 CCTGCTGCCACAAC-CCTAGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
17550725 GC
1 GC
17550727 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
184 113 0.74
185 40 0.26
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
CGACCGAAAACGCAGAATGCACAAGCCGGGGATCGGCCAGATCCCCCACCGCATGCTGTCGATCC
TGCTGCCACAACCCTAGATCCGATCCGATATTAGACTGGGAATGAACTCCATAT
Found at i:17551025 original size:26 final size:26
Alignment explanation
Indices: 17550984--17551036 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17550974 CCAGTCTGAT
17550984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17551010 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17551036 C
1 C
17551037 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17551208 original size:26 final size:26
Alignment explanation
Indices: 17551167--17551219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17551157 TCGATCTGAT
17551167 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17551193 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17551219 C
1 C
17551220 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17551584 original size:26 final size:26
Alignment explanation
Indices: 17551546--17551598 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17551536 CTGATCTGAT
*
17551546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
17551572 CTTAGACAT-GGAACGAACTTCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
17551598 C
1 C
17551599 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:17552096 original size:26 final size:26
Alignment explanation
Indices: 17552045--17552096 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17552035 TCAGTCTGAT
*
17552045 CTTAGACTGGGAATCAACTCTATATG
1 CTTAGACTGGGAATCAACTCCATATG
* * *
17552071 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
17552097 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:17552443 original size:26 final size:26
Alignment explanation
Indices: 17552414--17552466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17552404 CCGGTCTGAT
*
17552414 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
17552440 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
17552466 C
1 C
17552467 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:17552472 original size:185 final size:184
Alignment explanation
Indices: 17552254--17552624 Score: 467
Period size: 185 Copynumber: 2.0 Consensus size: 184
17552244 TCCAGCTAGG
* * * * *
17552254 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGGGTCCGGGC-GCTCA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGT-AGGGCTGCACA
** * * * *
17552318 GCCGACTGGAGAGGTAGAATGTACAAGCCGAGGATCGG-CCTGATCCCCTCCTGCGTGCTATCGA
65 GCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGTCCAG-T-CCCTCCTGCGTGCTATCAA
* * *
17552382 TCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
17552439 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTATGGCTGCACAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAGGGCTGCACAG
* * * * *
17552504 TCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCAGTCCCTTCTGTGTGCTGTCAATCC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGTCCAGTCCCTCCTGCGTGCTATCAATCC
** * *
17552569 TGCTACCGTAACCGTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
17552623 GC
1 GC
17552625 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
184 70 0.44
185 85 0.54
186 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAGGGCTGCACAG
CCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGTCCAGTCCCTCCTGCGTGCTATCAATCC
TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:17553305 original size:26 final size:26
Alignment explanation
Indices: 17553269--17553321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17553259 CCGGTCTGAT
17553269 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17553295 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17553321 C
1 C
17553322 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17555622 original size:159 final size:157
Alignment explanation
Indices: 17555205--17555633 Score: 371
Period size: 159 Copynumber: 2.7 Consensus size: 157
17555195 AACTCTGTAT
* * * * *
17555205 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTATGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGGGTATGGGCGCTCAG
* * * * * *
17555270 TCGATCGAAGAGGCAGAATGCGCAAGTCAGAGACCGGCCCAATCCCCCTCTGCGTACTGTCGATC
66 -CCATCGGAGATGCAGAATGCGCAAGTCAG-GATCAGCCCAATCCCCCTCTGCGTACTGCCGATC
** * * *
17555335 CTGCTACCACAACCCTCGGTCTAGTCCGA
129 CAACCACCACAACCCTCGATCTACTCCGA
* * * * * * * *
17555364 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT-GAGCTTTCGAGTGCTG
1 GCTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGGGTAT-GGGCGCTC
* * * * ** ** * *
17555427 AGCCGGTCGGAAATGCATAATGCACAAGCTGGGGATCAGCCTGATCCCCTTCTGCGTGCTGCCGA
64 AGCC-ATCGGAGATGCAGAATGCGCAAG-TCAGGATCAGCCCAATCCCCCTCTGCGTACTGCCGA
* * *
17555492 TCCAACCACCACAACCGTCGATCTGACT-GGG
127 TCCAACCACCACAACCCTCGATCT-ACTCCGA
* * *
17555523 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAATCCATGAAATGGGGGTGTGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGGGTATGGGCGCTCAG
*
17555588 CCATCCGGAGATGCAGAATGCGTAAGTCAAGGATC-GACCCAATCCC
66 CCAT-CGGAGATGCAGAATGCGCAAGTC-AGGATCAG-CCCAATCCC
17555634 TACTGCGTGT
Statistics
Matches: 204, Mismatches: 56, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
158 7 0.03
159 187 0.92
160 10 0.05
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGGGTATGGGCGCTCAG
CCATCGGAGATGCAGAATGCGCAAGTCAGGATCAGCCCAATCCCCCTCTGCGTACTGCCGATCCA
ACCACCACAACCCTCGATCTACTCCGA
Found at i:17555726 original size:26 final size:26
Alignment explanation
Indices: 17555682--17555734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17555672 CTGGTCTGAT
17555682 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
17555708 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17555734 C
1 C
17555735 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17556012 original size:355 final size:356
Alignment explanation
Indices: 17555517--17556185 Score: 840
Period size: 367 Copynumber: 1.9 Consensus size: 356
17555507 CGTCGATCTG
* * * * **
17555517 ACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAATCCATGAAATGGGGGTGTGGGC
1 ACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
* * * * * * *
17555582 GCTCAGCCATCCGGAGATGCAGAATGCGTAAGTCAAGGATCGACCCAATCCCTACTGCGTGTTAC
66 ACTCAGCCATCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAATCCCCACTACGTGCTAC
*
17555647 CGATCCTGCTA-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTT
131 CAATCCTGCTATCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTT
* * * * * *
17555711 AGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGTGCTCAGTCG
196 AGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* *
17555775 GCTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCTTGCTGCCGATCCCG
260 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCTTGCTGCCGATCCCG
17555840 CTGCCTGTCCTGCTGCCCCAACCCTCAATCCA
325 CTGCCTGTCCTGCTGCCCCAACCCTCAATCCA
* **
17555872 ACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
1 ACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
* ** * *
17555937 ACTCAGTCGAT-CGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTACGTGCTG
66 ACTCAG-CCATCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAATCCCCACTACGTGCTA
* *
17556001 CCAATCCTGCTATTGGTCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAA
130 CCAATCCTGCTA----------T-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATAAA
* * * *
17556066 CTCCGTATTCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
184 CTCCGTATGCTTAGATAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG
* * * *
17556131 GCGTTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGGTCCCC
249 GCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
17556186 TCCTGTGCGC
Statistics
Matches: 260, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
355 115 0.44
356 3 0.01
366 1 0.00
367 141 0.54
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (356 bp):
ACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGC
ACTCAGCCATCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAATCCCCACTACGTGCTAC
CAATCCTGCTATCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTT
AGATAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCTTGCTGCCGATCCCGC
TGCCTGTCCTGCTGCCCCAACCCTCAATCCA
Found at i:17556087 original size:26 final size:26
Alignment explanation
Indices: 17556048--17556099 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17556038 TCTGGTCTGA
17556048 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
17556074 TCTTAGA-TATGGAATGAACTCCGTAT
1 TCTTAGACTA-GGAATGAACTCCGTAT
17556100 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:17556376 original size:159 final size:159
Alignment explanation
Indices: 17556075--17556521 Score: 501
Period size: 159 Copynumber: 2.8 Consensus size: 159
17556065 ACTCCGTATT
* *
17556075 CTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
17556140 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGGT-CCCCTCCTGTGCGCTGTCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCT-CTGCGTGCTACCGATC
** * * * * *
17556204 TTATTGTCGCAACCCTCGATCCGGTCCA-CT
130 CCACTGCCACAACCCTCGATCCAG-CCAGCG
* * * *
17556234 CTTAGAC-TGAGAATGAACTCTGTATGCCTACGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17556298 CCGACCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCTCTACGTGCTACCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGATC
* * *
17556363 CCACTGCCACAACCCTCGCTCCAGCTAGGG
130 CCACTGCCACAACCCTCGATCCAGCCAGCG
* * *
17556393 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCAG
* * *
17556457 CCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGG-TCCGGTCCCCC-CTGCGTGCTATCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT-CGGTCCCCCTCTGCGTGCTACCGAT
17556520 CC
129 CC
17556522 TGCTGCCGTA
Statistics
Matches: 239, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
158 20 0.08
159 212 0.89
160 7 0.03
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCCAGCCAGCG
Found at i:17557658 original size:26 final size:26
Alignment explanation
Indices: 17557615--17557666 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17557605 CAGTTTGATG
* *
17557615 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCATATGC
17557641 TTAGACTGGTG-ATAAACTCCATATGC
1 TTAGACTGG-GAATAAACTCCATATGC
17557667 CCCCTGCGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGC
Found at i:17558078 original size:25 final size:25
Alignment explanation
Indices: 17558032--17558108 Score: 127
Period size: 25 Copynumber: 3.0 Consensus size: 25
17558022 CTAGTCCAAT
*
17558032 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
17558058 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
*
17558083 CTTAGACTGGGATGAACTTCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
17558108 C
1 C
17558109 CTAAGTTAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 39 0.80
26 10 0.20
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:17558304 original size:26 final size:26
Alignment explanation
Indices: 17558253--17558305 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17558243 CTGGTTCGAT
**
17558253 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17558279 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17558305 C
1 C
17558306 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17558947 original size:26 final size:26
Alignment explanation
Indices: 17558918--17558969 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17558908 CCAGTCTGAT
**
17558918 GTTAGACTGGGAATGAACTCCATATG
1 GTTAGACAAGGAATGAACTCCATATG
*
17558944 GTTAGACAAGGAATGAACTCCGTATG
1 GTTAGACAAGGAATGAACTCCATATG
17558970 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (26 bp):
GTTAGACAAGGAATGAACTCCATATG
Found at i:17559289 original size:159 final size:158
Alignment explanation
Indices: 17558945--17559300 Score: 378
Period size: 158 Copynumber: 2.2 Consensus size: 158
17558935 CTCCATATGG
* * ** *
17558945 TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTAGGTGCTCAGCC
1 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGCC
* * * *
17559010 GATCGAAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
66 GATCGAAGAGGCAGAATGCGCAAGCCAAGCATCAGCCCAATCCCCCCTGCGTGCTGTCGATCCTG
** * * * *
17559075 CTGCTGCAACCCTCGATCTGGTCCGATC
131 CTGCCACAACACTCGATCCGGTCAGAGC
* * * * * *
17559103 TTAGAC-TGGGAATTAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTACGGGCGCTGAGC
1 TTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGC
* * * * *
17559167 CGATCAGAA-AGGCATAATGCGTAAGCCGAGCATCAGCCCAATCCTCCTCTGTGTGCTGTCGAT-
65 CGATC-GAAGAGGCAGAATGCGCAAGCCAAGCATCAGCCCAATCC-CCCCTGCGTGCTGTCGATC
* *
17559230 CTCGCTGCCACAACACTCGGTCCGG-CTAGGGC
128 CT-GCTGCCACAACACTCGATCCGGTC-AGAGC
*
17559262 TTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCA
1 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCA
17559301 CAAAACGGGT
Statistics
Matches: 161, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
158 89 0.55
159 71 0.44
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGCC
GATCGAAGAGGCAGAATGCGCAAGCCAAGCATCAGCCCAATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACACTCGATCCGGTCAGAGC
Found at i:17559460 original size:26 final size:26
Alignment explanation
Indices: 17559419--17559471 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17559409 CTGGTTTGAT
*
17559419 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17559445 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17559471 C
1 C
17559472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17560937 original size:26 final size:26
Alignment explanation
Indices: 17560900--17560951 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17560890 ATTTGATTTT
17560900 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
17560926 GACTGGGGATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
17560952 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:17561120 original size:26 final size:26
Alignment explanation
Indices: 17561091--17561143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17561081 TCCGACCGAT
17561091 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17561117 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17561143 C
1 C
17561144 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17561232 original size:195 final size:184
Alignment explanation
Indices: 17560738--17561401 Score: 629
Period size: 184 Copynumber: 3.5 Consensus size: 184
17560728 GGCTCAAAAT
* * * * * * * *
17560738 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGATGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAAC
* * * * * ** *
17560803 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTTTCTGTGTGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCC-CCCTGTGTGCTGTCAATCC
* * ** * * *** *
17560868 TACTGCCGCCACCTTC-AGTCTGATTTGAT-TTTGACTGGGAATGAACTCCGTATG
130 TGCTGCCGCAACCCGCAAG-CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17560922 CTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCA-A
* ** * * * * * *
17560987 -AGGTCGAAGAGGCAAAATACACAAGCTGGGGATCGACTTGATCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGTGTGCTGTCAAT-C
*
17561051 TGCTGCTAGTCCTGCTA-CCGCAAGCCTTGGTCCGACCGATCTTAGACTGGGAATGAACTCCGTA
129 --CTGCT-G-CC-GCAACCCGCAAGCC--GGTCC-A---ATCTTAGACTGGGAATGAACTCCGTA
17561115 TG
183 TG
* * *
17561117 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGTGCTCAA
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAA
** * * *
17561181 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCTGGTCCCCCCTGTGTGCTGTCAATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGTGTGCTGTCAATCC
* * * *
17561246 TGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
130 TGCTGCCGCAACCCGCAAGCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* *
17561301 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATT-CGTGTGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-TTGCGGGTGCTCAA
* *
17561365 CCGACCAGAGAGGCAGGATGCACAAGCCGGGGATCGA
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
17561402 ACGGGTGATA
Statistics
Matches: 390, Mismatches: 70, Indels: 40
0.78 0.14 0.08
Matches are distributed among these distances:
183 16 0.04
184 201 0.52
185 2 0.01
186 4 0.01
187 2 0.01
188 10 0.03
189 8 0.02
190 10 0.03
191 1 0.00
192 5 0.01
194 4 0.01
195 126 0.32
196 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCTCAAC
CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTGTGTGCTGTCAATCCT
GCTGCCGCAACCCGCAAGCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17561304 original size:26 final size:26
Alignment explanation
Indices: 17561275--17561327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17561265 CCGGTCCAAT
17561275 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17561301 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17561327 C
1 C
17561328 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17562316 original size:159 final size:157
Alignment explanation
Indices: 17562025--17562453 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 157
17562015 AACTCCGTAT
* * * *
17562025 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
17562090 CAGGCC-AGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATCCACCCCTGCGTGTTGTCAAT
65 CCGACCGA-AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCC-CCCCTGCGTGCTGCCAAT
** * * *
17562154 CCTGCTGCTGCAACCCTCAGTCTGATCT-GA
128 CCTGCTGCCACAACCCCCAGTCCG-GCTAGA
* * * * *
17562184 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACTCATGAAATGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAATGAGCGTGCGGGCGCTCA
* * ** * *
17562248 GCCGACCGAAAAGGCATAATGCGCAAGTTAGGGATCGGCCTGATCCCCCTCTGCGTGCTGCCAGT
64 GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCAAT
* *
17562313 CCTGCTGCCACAACCCCCGGTCCGGCTAGG
128 CCTGCTGCCACAACCCCCAGTCCGGCTAGA
* * *
17562343 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
17562408 TCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCC
65 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCC
17562454 TACCGCTTGC
Statistics
Matches: 220, Mismatches: 44, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 7 0.03
159 211 0.96
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCAATCCT
GCTGCCACAACCCCCAGTCCGGCTAGA
Found at i:17562870 original size:170 final size:171
Alignment explanation
Indices: 17562600--17562933 Score: 411
Period size: 170 Copynumber: 2.0 Consensus size: 171
17562590 AGCCAGTCGA
* ** ** * * ** *
17562600 AGAGGCATAATACGCAAGCTGGGGATCAGCTTGGTCCCCCTCTGCGTGCTGTCGATTGCGCTGCC
1 AGAGGCATAACACGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATTGCGCTGAC
** * *
17562665 GGTCCTGCTACCACAACCCTCAATCCGGTTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAA
66 GGTCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* *
17562730 G-CAACCCACAAAATGGGCTTGCAGGCGCTCAGCTGGCTGG
131 GCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCTGGCTGG
* *
17562770 AGAGGCATAACACGCAAGCCAGGGATCAGCCCGATCCCCCTCTATGTGCTACCGATCT-CGCTTA
1 AGAGGCATAACACGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTACCGAT-TGCGCTGA
* ** *
17562834 CGGTCCTGCTACCACAACCTTCTGTTCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
65 CGGTCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
** * *
17562899 AGCCAACCTTCGAAATGAGCGTGCAGGTGCTCAGC
130 AGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGC
17562934 CAGTCGAAGA
Statistics
Matches: 136, Mismatches: 26, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
170 109 0.80
171 27 0.20
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (171 bp):
AGAGGCATAACACGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATTGCGCTGAC
GGTCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
GCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCTGGCTGG
Found at i:17563068 original size:26 final size:26
Alignment explanation
Indices: 17563039--17563091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17563029 CCGATCTGAT
17563039 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17563065 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17563091 C
1 C
17563092 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17564463 original size:26 final size:26
Alignment explanation
Indices: 17564434--17564486 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17564424 CCGGTTCGAC
17564434 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
17564460 CTTAGACTAGGGATGAATTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
17564486 C
1 C
17564487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:17566193 original size:26 final size:26
Alignment explanation
Indices: 17566152--17566204 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566142 TCGATCCAAT
17566152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17566178 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17566204 C
1 C
17566205 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.