Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 123 of 138
Found at i:17566549 original size:26 final size:26
Alignment explanation
Indices: 17566520--17566572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566510 CCGATCCGAT
17566520 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17566546 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17566572 C
1 C
17566573 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17566849 original size:368 final size:365
Alignment explanation
Indices: 17565956--17567003 Score: 1047
Period size: 368 Copynumber: 2.8 Consensus size: 365
17565946 CCTCTGCGTG
* * ** * * *
17565956 TTGCTGGTCCCGCTGCCACAACTTTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATG
1 TTGCTGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
** **** * * * *
17566021 CCTAAGCCAACCCATGAAGCGGGCGTGCAGGTGCTCAGCCGACCAGAGAGGCAGAATACGGAAG-
66 CCTAAGCCAACCCAAAAAAATAGCGTGCGGGTGCTCAGCAGACCAGAGAGGCAGAATGCGCAAGC
* * * * * * **
17566085 TCGGGGATCAGCCCTGTCCCCTCTCCGTGCTCTCGATCCTGCTGTCGCAACTCTTTGT-CGATCC
131 T-GGGGATCGGCCC-GTCCCCCCTGCATGCTGTCGATCCTACTGTCGCAAC-CTCGGTCCGATCC
*
17566149 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
193 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
17566214 CCCATGAAACGACCGTGCGGGTGCTCAGTCGACCGGAGAGGCCGACCGAAGAGGCATAATGCGTA
257 CCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGGCCGACCGAAGAGACATAATGCGAA
* * * * *
17566279 AGCTGAAGATCAACCCAGTCCCTCTCTGCGTGTTGTCGATCTCG
322 AACTGAAGATCAACCCAATCCCTCTCTGCGTGCTGTCGATCCCA
* * * * * *
17566323 CTG-TTAGTCCTGCTGCCACAACCGTCGGTCCGACTGGGGCTTAGATATCGAATGAACTCTGTAT
1 TTGCTGA-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* ** ** * * *
17566387 GCCTAAGCCTACCC-ATGAAATGAGCGTGCGGGCACTCAGCCA-ATCGGAGAGGTAGAATGCGCA
65 GCCTAAGCCAACCCAAAAAAAT-AGCGTGCGGGTGCTCAG-CAGACCAGAGAGGCAGAATGCGCA
* * *
17566450 AGCCT-GGGATCGACTCGATCCCCCTTGCATGCTGTCGATCCTACTGTCGCAACACTCGGTCCGA
128 AG-CTGGGGATCGGCCCG-TCCCCCCTGCATGCTGTCGATCCTACTGTCGCAAC-CTCGGTCCGA
17566514 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
190 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGT
* *
17566579 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGGTCGACCGGAGAGACATAATGC
254 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGGCCGACCGAAGAGACATAATGC
* *
17566644 -AAAACTCGAGGATCAGCCCAATCACC-CTCTGCGTGCTGTCGATCCCA
319 GAAAACT-GAAGATCAACCCAATC-CCTCTCTGCGTGCTGTCGATCCCA
*
17566691 TTGCTGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
1 TTGCTGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* *
17566756 CCCAAGCCAACCCAAAAAAAAATAG-GTGCGGGTGCTCAGCAGGCCAGAGAGGCAGAATGCGCAA
66 CCTAAGCCAACCC--AAAAAAATAGCGTGCGGGTGCTCAGCAGACCAGAGAGGCAGAATGCGCAA
* * *
17566820 GCTGGGGATCGGCCCGGCCCCCCTGCATGCTGTTGATCCTGCTGCTGGTCCTACTGTCGTAATCC
129 GCTGGGGATCGGCCCGTCCCCCCTGCA------TG---CTG-T-C-GATCCTACTGTCGCAA-CC
* * ** *
17566885 TCGATCCGATCCGATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTA
181 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTA
* * * ** *
17566950 TGCCTAAGCCAACCC-CTGAAATGAGCGTGTC-GGCGCTCAATCGACCGGAGAGGC
245 TGCCTAAGTCAACCCAC-GAAACGAGCGT-ACGGGCGCTCAGCCGACCGAAGAGGC
17567004 AGAATGCACA
Statistics
Matches: 555, Mismatches: 95, Indels: 49
0.79 0.14 0.07
Matches are distributed among these distances:
366 3 0.01
367 139 0.25
368 233 0.42
369 46 0.08
370 2 0.00
371 5 0.01
374 2 0.00
377 3 0.01
378 1 0.00
379 2 0.00
380 116 0.21
381 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (365 bp):
TTGCTGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCAAAAAAATAGCGTGCGGGTGCTCAGCAGACCAGAGAGGCAGAATGCGCAAGC
TGGGGATCGGCCCGTCCCCCCTGCATGCTGTCGATCCTACTGTCGCAACCTCGGTCCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGGCCGACCGAAGAGACATAATGCGAAAACT
GAAGATCAACCCAATCCCTCTCTGCGTGCTGTCGATCCCA
Found at i:17566951 original size:26 final size:26
Alignment explanation
Indices: 17566900--17566952 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566890 CCGATCCGAT
*
17566900 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17566926 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
17566952 C
1 C
17566953 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17567315 original size:158 final size:156
Alignment explanation
Indices: 17566926--17567291 Score: 434
Period size: 156 Copynumber: 2.3 Consensus size: 156
17566916 ACTCTATATG
* * *
17566926 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCC-CTGAAATGAGCGTGTCGGCGCTCA
1 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCATGTGGGCGCTCA
* * * * *
17566989 ATCGACCGGAGAGGC-AGAATGCACAAGCGGGGGACCGACCTGATCCCCCTACGTGCTGTCCACC
64 GTCGACCAGAGA-GCTAGAATGCACAAGCCGGGGACCGACCCGATCCCCCTACGTGCAGTCCACC
* * *
17567053 TGCTACCGTAACCCTCAGTCCGATCCGAT
128 TACTACCGCAACCCTCAGTCCGATCCAAT
* * **
17567082 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCGCTCAGT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAGT
* *
17567147 CGACCAGAGAGCTAGAATG-AGCAAGCCGGGGACCGACCCGATCCCTCCTGCGTGCAGTCGATCC
66 CGACCAGAGAGCTAGAATGCA-CAAGCCGGGGACCGACCCGATCCC-CCTACGTGCAGTCCA-CC
* * * *
17567211 TACTATCGCAACCCTCGGTCTGGTCCAAT
128 TACTACCGCAACCCTCAGTCCGATCCAAT
* * *
17567240 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCAT
1 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT
17567292 TCGGGTGTGA
Statistics
Matches: 179, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
155 5 0.03
156 93 0.52
157 12 0.07
158 69 0.39
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (156 bp):
CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCGCTCAGT
CGACCAGAGAGCTAGAATGCACAAGCCGGGGACCGACCCGATCCCCCTACGTGCAGTCCACCTAC
TACCGCAACCCTCAGTCCGATCCAAT
Found at i:17567610 original size:26 final size:26
Alignment explanation
Indices: 17567581--17567633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17567571 CGGATCCAAT
17567581 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
17567607 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
17567633 C
1 C
17567634 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:17567744 original size:196 final size:196
Alignment explanation
Indices: 17567410--17567918 Score: 574
Period size: 196 Copynumber: 2.6 Consensus size: 196
17567400 TCCGGTTGGG
* * * *
17567410 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAAAGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* ** * * * * * *
17567475 TCGGTCGGAGAGACAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTACATACTACTGATCT
66 CCGGTCGGAGAGGTAGAATGCACAAACCGGGGATCGACCCAGTCCCCCCTACATACTACAGATCC
* *
17567540 TACTGCTGGTCCTGCTGCCGCAACAGTCGAT-CGGATCCAATCTTAGACTGGGAATGAACTCCAT
131 TACTGCTGGTCCTGCTGCCGCAACACTCGATCCAG-TCCAATCTTAGACTGGGAATGAACTCCAT
17567604 AT
195 AT
* *
17567606 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
17567671 CCGGTCGGAGAGGTAGAATGCGA-AAATCGGGGATCGACCCAGTCCCCCCTGCATGCTGCAGATC
66 CCGGTCGGAGAGGTAGAATGC-ACAAACCGGGGATCGACCCAGTCCCCCCTACATACTACAGATC
* * ** * * * * *
17567735 CTGCTGCTGGTTCTGCTGTTGTAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCAT
130 CTACTGCTGGTCCTGCTGCCGCAACACTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCAT
17567800 AT
195 AT
* * * * *
17567802 GCTTACACATGGAATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCGCT-CGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG-TGCAGGCGCTCA
* * * ** * * * *
17567866 GCCAGTCGGAGAGGTACAAAGCACAAGTCGAGCATCGGCCCGGTCCCCCCTAC
65 GCCGGTCGGAGAGGTAGAATGCACAAACCGGGGATCGACCCAGTCCCCCCTAC
17567919 GTGCTGTCGA
Statistics
Matches: 263, Mismatches: 46, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
195 1 0.00
196 258 0.98
197 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCACAAACCGGGGATCGACCCAGTCCCCCCTACATACTACAGATCC
TACTGCTGGTCCTGCTGCCGCAACACTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATA
T
Found at i:17568207 original size:159 final size:158
Alignment explanation
Indices: 17567814--17568249 Score: 430
Period size: 159 Copynumber: 2.8 Consensus size: 158
17567804 TTACACATGG
* * * *
17567814 AATGAACCCCGTCTGCCTAAGCCAACCCACGAAACGAGCGCT-CGGGCGCTC-AGCCAGTCGGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCACTCAACCCA-TCGGAG
* * * ** *
17567877 AGGTACAAAGCACAAGTCGAGCATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCATA
64 AGGTACAATGCGCAAGCCGAGCATCGGCCCGACCCCCCCTACGTGCTGTCGATCCTACTACCACA
* *
17567942 ACCCTCGGTCCGGTCCAATCTTAGACAAGG
129 ACCCTCGGTCCGGTCCAAGCTTAGACAAGA
* * ** * * *
17567972 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGTCGATTGGAAAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCCATCGGAGAG
* * * * * * * *
17568037 GCATAATGCGCAAGCCGAGGATCGGCCCGACCCCCCTCTGCGTGCTGTTGGTCCTGCTGCCACAA
66 GTACAATGCGCAAGCCGAGCATCGGCCCGACCCCCC-CTACGTGCTGTCGATCCTACTACCACAA
* * *
17568102 CCCTCGGTCCGG-CTAGGGCTTAGACATGA
130 CCCTCGGTCCGGTCCA-AGCTTAGACAAGA
* *
17568131 AATGAACTCTC-TATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAACCCATCGGAGA
1 AATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCCATCGGAGA
* * * * ** * * *
17568195 GGTAGAATGCGCAAGCCGGGAATCGACCCGGTCCCCCCTGCATGCTGCCGATCCT
65 GGTACAATGCGCAAGCCGAGCATCGGCCCGACCCCCCCTACGTGCTGTCGATCCT
17568250 GCTATCGTGA
Statistics
Matches: 224, Mismatches: 49, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 94 0.42
159 128 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCCATCGGAGAG
GTACAATGCGCAAGCCGAGCATCGGCCCGACCCCCCCTACGTGCTGTCGATCCTACTACCACAAC
CCTCGGTCCGGTCCAAGCTTAGACAAGA
Found at i:17569174 original size:26 final size:25
Alignment explanation
Indices: 17569123--17569174 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17569113 CTGATTCGAT
*
17569123 CTTAGACTGGAATGAACTCTGAATG
1 CTTAGACTGGAATGAACTCCGAATG
* *
17569148 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGAATG
17569174 C
1 C
17569175 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGAATG
Found at i:17569883 original size:26 final size:26
Alignment explanation
Indices: 17569844--17569896 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17569834 GGCTCAAAAT
*
17569844 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
17569870 CTTAGACATG-GAATAAACTCCGTATG
1 CTTAGAC-TGAGAATAAACTCCGTATG
17569896 C
1 C
17569897 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:17570079 original size:26 final size:26
Alignment explanation
Indices: 17570029--17570079 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17570019 TGGTCCGATC
* **
17570029 TTAGACTTGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
17570055 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
17570080 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:17570893 original size:26 final size:26
Alignment explanation
Indices: 17570857--17570909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17570847 CTGGTCCAAT
*
17570857 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17570883 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17570909 C
1 C
17570910 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17571614 original size:26 final size:26
Alignment explanation
Indices: 17571576--17571628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17571566 GGCTCAAAAT
17571576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17571602 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17571628 C
1 C
17571629 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17571956 original size:159 final size:158
Alignment explanation
Indices: 17571601--17572103 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
17571591 AACTCCGTAT
* **
17571601 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAAGGCGCTCAG
** * * *
17571666 CCGGTCATAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCTCTGCGTGCTATCAATCC
66 CCGACCATAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATCAATCC
* * * * *
17571731 TGCTACCGCAACCCTCGGTCTGGTCTGA
131 CGCTACCACAACACTCGGTCCGATCTGA
* * * *
17571759 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGAAGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAAGGCGCTCA
* * **
17571823 GCCGACCGA-AGAGGCATAATGTGCAAGCCGGGGATCGGCCCGCTCCCCCTCTGCGTGCTATCGG
65 GCCGACC-ATAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCT-CCCCTCTGCGTGCTATCAA
*
17571887 TCCCGCTACCACAACACTCGGTCCGAT-TGGG
128 TCCCGCTACCACAACACTCGGTCCGATCT-GA
* * *
17571918 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGAAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAAGGCGCTCAG
* ** * * * * * * * *
17571983 CCCG-TCGGAGAGGTAGAATACGCAAGCCGGAGATTGGCCCGGTCCTCTCTGCGTGCTGTCGATC
66 -CCGACCATAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATCAATC
** * * * **
17572047 CTACTGCCGCAACCCTCAATCCGATCTGA
130 CCGCTACCACAACACTCGGTCCGATCTGA
* * *
17572076 TCTTAGGCCA-GGAATGAACTCTGTATGC
1 GCTTA-GACATGGAATGAACTCCGTATGC
17572104 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 54, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 147 0.52
159 130 0.46
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAAGGCGCTCAG
CCGACCATAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGCTCCCCTCTGCGTGCTATCAATCC
CGCTACCACAACACTCGGTCCGATCTGA
Found at i:17572270 original size:12 final size:12
Alignment explanation
Indices: 17572235--17572276 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
17572225 CCCTCTACAC
17572235 GCTGCCGAT-CT
1 GCTGCCGATCCT
17572246 CGCTGCCGATCCT
1 -GCTGCCGATCCT
*
17572259 GCTGCCGGTCCT
1 GCTGCCGATCCT
*
17572271 ACTGCC
1 GCTGCC
17572277 ATAATCCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 25 0.93
13 2 0.07
ACGTcount: A:0.07, C:0.43, G:0.26, T:0.24
Consensus pattern (12 bp):
GCTGCCGATCCT
Found at i:17572612 original size:184 final size:184
Alignment explanation
Indices: 17572299--17572667 Score: 409
Period size: 184 Copynumber: 2.0 Consensus size: 184
17572289 TCGGTTGGGT
** * *
17572299 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTGCGAAACAAGCGTGCTGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAGC
* * ** * * * * *
17572364 CAACCGGAGAGGTAGAATGTGCAAGTCGGGGATTGGCCCGATCCCCCCTATGTGCTGCCGATCCT
66 CAACCGGAGAGGCACAATACGAAAATCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCT
* * ** * *
17572429 GCTGCTGCAACCCTC-GATTTGGTCCAATCCTAGACTGATAATGAACTCCGTATG
131 ACTACCACAACCCTCAG-TCTGGTCCAATCCTAGACTGAGAATGAACTCCGTATG
* * * *
17572483 CTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCATGAAA-AGTGCATGCAGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-AGCATGCAGGCGCTCAG
* * * * * *
17572547 CCGATCGGAGAGGCACAATACGAAAATCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCC
65 CCAACCGGAGAGGCACAATACGAAAATCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
* * * *
17572612 TATTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
130 TACTACCACAACCCTCAGTCTGGTCCAATCCTAGACTGAGAATGAACTCCGTATG
17572667 C
1 C
17572668 CTAAGTCAAC
Statistics
Matches: 150, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
183 1 0.01
184 148 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAGC
CAACCGGAGAGGCACAATACGAAAATCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCT
ACTACCACAACCCTCAGTCTGGTCCAATCCTAGACTGAGAATGAACTCCGTATG
Found at i:17573007 original size:25 final size:26
Alignment explanation
Indices: 17572952--17573009 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
17572942 CTCGGTTCGG
17572952 TCTG-ATG-TTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
17572976 TCTGTATGCTTAGACTGGG-ATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
17573001 T-TCGTATGC
1 TCT-GTATGC
17573010 CTAAGTCCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.16
25 16 0.52
26 10 0.32
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAC
Found at i:17573097 original size:24 final size:24
Alignment explanation
Indices: 17573070--17573116 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
17573060 TACATGCTAC
*
17573070 CGATCCCGTTACCGGTCCTGCTGT
1 CGATCCCGTAACCGGTCCTGCTGT
*
17573094 CGATCCTGTAACCGGTCCTGCTG
1 CGATCCCGTAACCGGTCCTGCTG
17573117 CCATAACCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.36, G:0.26, T:0.28
Consensus pattern (24 bp):
CGATCCCGTAACCGGTCCTGCTGT
Found at i:17574546 original size:26 final size:26
Alignment explanation
Indices: 17574508--17574560 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17574498 GGCTCAAAAT
17574508 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17574534 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
17574560 C
1 C
17574561 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17574851 original size:196 final size:196
Alignment explanation
Indices: 17574506--17574859 Score: 485
Period size: 196 Copynumber: 1.8 Consensus size: 196
17574496 ATGGCTCAAA
*
17574506 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * ** * *
17574571 CCATGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAAAATGCGTAAGCCAAGGATCGGC
66 CCATAAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGAGGCAAAATGCACAAGCCAAGGACCAGC
* *
17574636 CCGATCCCCCTTACGTGCTGTCGATCCTGTTGCTAGTCCTGCTGCCGTAATCCTTGGTCCGGTCT
131 CCAATCCCCCATACGTGCTGTCGATCCTGTTGCTAGTCCTGCTGCCGTAATCCTTGGTCCGGTCT
17574701 G
196 G
* * **
17574702 ATCTTAGATTGGGAATGAACTCTGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCCGC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * *
17574767 CCATAAAATGAGCGTGCGTACGCTCAGTTGGCC-GAAGAGGCAGAATGCACAAGCCAGGGACCAG
66 CCATAAAACGAGCGTGCGGACGCTCAGCCGGCCAG-AGAGGCAAAATGCACAAGCCAAGGACCAG
* *
17574831 CCCAATCCCTCATGCGTGCTGTCGATCCT
130 CCCAATCCCCCATACGTGCTGTCGATCCT
17574860 ACTGCCATCC
Statistics
Matches: 134, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
195 1 0.01
196 133 0.99
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATAAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGAGGCAAAATGCACAAGCCAAGGACCAGC
CCAATCCCCCATACGTGCTGTCGATCCTGTTGCTAGTCCTGCTGCCGTAATCCTTGGTCCGGTCT
G
Found at i:17576978 original size:26 final size:26
Alignment explanation
Indices: 17576942--17576994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17576932 ACGATCTGAT
* *
17576942 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17576968 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17576994 C
1 C
17576995 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17577702 original size:26 final size:26
Alignment explanation
Indices: 17577664--17577716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17577654 GGCTCAAACT
17577664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17577690 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17577716 C
1 C
17577717 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17578058 original size:26 final size:26
Alignment explanation
Indices: 17578006--17578058 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17577996 CCAGTTCGAT
* **
17578006 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCAAATG
* *
17578032 CTTAGACTGGGGATGAATTCCAAATG
1 CTTAGACTGGGAATGAACTCCAAATG
17578058 C
1 C
17578059 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAAATG
Found at i:17578495 original size:26 final size:26
Alignment explanation
Indices: 17578457--17578509 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17578447 CTGATCTGAT
17578457 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17578483 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
17578509 C
1 C
17578510 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17578515 original size:183 final size:184
Alignment explanation
Indices: 17578299--17578659 Score: 530
Period size: 183 Copynumber: 2.0 Consensus size: 184
17578289 TCCGGCTGGG
17578299 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* *
17578364 TCGGTCGAAGAGGCAGAATGCGCAAGCC-GTGGA-TCGGCCC-GTCCCCTCTGCATGCTATCGAT
66 TCGGTCGAAGAGGCAGAATGCGCAAGCCAG-GGACT-GGCCCAGTCCCCCCTACATGCTATCGAT
* * * *
17578426 CCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCATAT
129 CCTGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* * *
17578482 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * ** *
17578547 TCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGACTGGCCCAGTCCCCCCTATGTGCTGTCGATCC
66 TCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCAGTCCCCCCTACATGCTATCGATCC
* * *
17578612 TGCTATCGCAACCCTTAGTCCGATCCGATCTTAGACTAGGAATGAACT
131 TGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACT
17578660 TCGTATGCCT
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
183 96 0.61
184 62 0.39
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
TCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCAGTCCCCCCTACATGCTATCGATCC
TGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:17579559 original size:26 final size:26
Alignment explanation
Indices: 17579521--17579573 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17579511 CTGATCCGAT
17579521 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17579547 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
17579573 C
1 C
17579574 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17579625 original size:184 final size:184
Alignment explanation
Indices: 17579325--17579724 Score: 532
Period size: 184 Copynumber: 2.2 Consensus size: 184
17579315 GCAACCATTA
* ** * *
17579325 GTCCGATCTGATCTTAGTTTGGGAATAAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
1 GTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
* * ** * *
17579390 CTAAGCCAACCCATGAAATGACCGTGCGAGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCC
66 CTAAGCCAACCCACGAAACGACCGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATACGCAAGAC
* * *
17579455 GTGGATCGGCCCGGT-CCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCG
131 GGGGAT-AGCCCGGTCCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCG
*
17579509 GTCTGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
1 GTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
* * * * *
17579574 CTAAGCCAACCCACGAAACGATCGTGCGGGGGCTCAGCCGACCGGAGAGGCAGAATACGCAAGAT
66 CTAAGCCAACCCACGAAACGACCGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATACGCAAGAC
* * * * *
17579639 GGGGATAGCCTGGTCCCCCCCTGCGTGCTATTGATCCTGCTATCGCAACCCTCG
131 GGGGATAGCCCGGTCCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCG
* * *
17579693 GTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 GTCCGATCCGATCTTAGACTAGGAATGAACTC
17579725 TGTAAGCCTA
Statistics
Matches: 186, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 6 0.03
184 180 0.97
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
CTAAGCCAACCCACGAAACGACCGTGCGAGCGCTCAGCCGACCGAAGAGGCAGAATACGCAAGAC
GGGGATAGCCCGGTCCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCG
Found at i:17579816 original size:158 final size:157
Alignment explanation
Indices: 17579547--17580045 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
17579537 ACTCCATATG
* * * *
17579547 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGGGCTCAGC
1 CTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGC
* * * * *
17579612 CGACCGGAGAGGCAGAATACGCAAGATGGGGAT-AGCCTGGTCCCCCCCTGCGTGCTATTGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGT-CCCCCCTGCGTGCT-TCGATCC
17579676 TGCTATCGCAACCCTCGGTCCGGTCTGAT
129 TGCTATCGCAACCCTCGGTCCGGTCTGAT
* ** * ** *
17579705 CTTAGAC-TGGGAATGAACTCTGTAAGCCTAAGTTAACCCATGAAATGAACGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
* * * * *
17579769 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGAT-
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCC-CTGCGTGCT-TCGATC
** ** * * **
17579833 CTCGCTGCCATAACCCTTGGTTCGGT-TGGGG
128 CT-GCTATCGCAACCCTCGGTCCGGTCT-GAT
* ** *
17579864 CTTAGACATGGAATGAACTCCCTATA-CCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTA-AGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
** * *
17579928 CCGGTCTGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTACGTGCTTCCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTGCGTGCTT-CGATCC
* * *
17579993 T-ATAGTCGCAACCCTCGGTCCTGTCCGAT
129 TGCTA-TCGCAACCCTCGGTCCGGTCTGAT
*
17580022 CTTAGAC-TGGGAATGAACTTCGTA
1 CTTAGACAT-GGAATGAACTCCGTA
17580046 TGCTTAGACT
Statistics
Matches: 266, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 133 0.50
159 127 0.48
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTGCGTGCTTCGATCCTG
CTATCGCAACCCTCGGTCCGGTCTGAT
Found at i:17580357 original size:9 final size:9
Alignment explanation
Indices: 17580343--17580377 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
17580333 TTAGAAAGAG
17580343 TTTCACAAT
1 TTTCACAAT
17580352 TTTCACAAT
1 TTTCACAAT
17580361 TTTCAC--T
1 TTTCACAAT
17580368 TTTCACAAT
1 TTTCACAAT
17580377 T
1 T
17580378 GTTGGCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (9 bp):
TTTCACAAT
Found at i:17581118 original size:26 final size:26
Alignment explanation
Indices: 17581082--17581134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17581072 CCAGTTCGAT
*
17581082 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17581108 CTTAGACTGGGGATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17581134 C
1 C
17581135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17581236 original size:184 final size:184
Alignment explanation
Indices: 17580923--17581488 Score: 637
Period size: 184 Copynumber: 3.0 Consensus size: 184
17580913 TCCGACTGGG
* * **
17580923 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
17580988 CCGGTC-AGAGAGGTAGAATGCCCAAGCCGAGGATC-AGCCCGATCCCCCTTGCGTACTGTCGAT
66 CCGGTCGA-AGAGGTAGAATGCTCAAGCCGAGGATCGA-CCCGGTCCCCCCTGTGT-CTGTCGAT
17581051 CCTGCTGTC-GCAACCCTCGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCTGTAT
128 CCTGCTGTCTGCAACCCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCTGTAT
* * * * *
17581107 GCTTAGAC-TGGGGATGGACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
17581171 GCCGATCGAAGAGGCAGAATGCTCAAGCCGAGGATCGACCTGGTCCCCCCTGTGTGGTATCGATC
65 GCCGGTCGAAGAGGTAGAATGCTCAAGCCGAGGATCGACCCGGTCCCCCCTGTGT-CTGTCGA--
*
17581236 CTGCTGCTGGTCTTGCTGCTGCAAGCCTCGGTCCAGTCTGATCTTAG-CTTGGGAATGAACTCTG
127 -T-C--CT-G-C-TG-T-CTGCAACCCTCGGTCCAGTCTGATCTTAGAC-TGGGAATGAACTCTG
*
17581300 TCT
182 TAT
*
17581303 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
17581368 TCGGTCGGAGAGGTAGAATGCGT-AAGCCGAGGACCGACCCGGTCCCCCCCCGTGTCTGTCGATC
66 CCGGTCGAAGAGGTAGAATGC-TCAAGCCGAGGATCGACCCGGT-CCCCCCTGTGTCTGTCGATC
* *
17581432 CTGCTG-CTGCAACCCTCGGT-CTGATCTGATCTTAGACTGGGGATGAACTCTGTAT
129 CTGCTGTCTGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCTGTAT
17581487 GC
1 GC
17581489 CTAAGTCAAC
Statistics
Matches: 320, Mismatches: 40, Indels: 44
0.79 0.10 0.11
Matches are distributed among these distances:
183 3 0.01
184 144 0.45
185 3 0.01
187 3 0.01
188 2 0.01
189 1 0.00
190 4 0.01
191 1 0.00
192 2 0.01
193 3 0.01
194 1 0.00
195 2 0.01
196 138 0.43
197 13 0.04
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGTCGAAGAGGTAGAATGCTCAAGCCGAGGATCGACCCGGTCCCCCCTGTGTCTGTCGATCCT
GCTGTCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:17581399 original size:196 final size:196
Alignment explanation
Indices: 17581060--17581440 Score: 529
Period size: 196 Copynumber: 1.9 Consensus size: 196
17581050 TCCTGCTGTC
* *
17581060 GCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGGA
1 GCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
* * *
17581125 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGAAGAGGCAGAA
* * * *
17581190 TGCTCAAGCCGAGGATCGACCTGGT-CCCCCCTGTGTGGTATCGATCCTGCTGCTGGTCTTGCTG
131 TGCTCAAGCCGAGGACCGACCCGGTCCCCCCCCGTGT-CTATCGATCCTGCTGCTGGTCTTGCTG
17581254 CT
195 CT
* *
17581256 GCAAGCCTCGGTCCAG-TCTGATCTTAG-CTTGGGAATGAACTCTGTCTGCTTAGACAT-GGAAT
1 GCAACCCTCGGTCCAGTTC-GATCTTAGAC-TGGGAATGAACTCTGTATGCTTAGAC-TGGGAAT
* * * * *
17581318 GAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGTA
63 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGAAGAGGCA
*
17581383 GAATGCGT-AAGCCGAGGACCGACCCGGTCCCCCCCCGTGTCTGTCGATCCTGCTGCTG
128 GAATGC-TCAAGCCGAGGACCGACCCGGTCCCCCCCCGTGTCTATCGATCCTGCTGCTG
17581441 CAACCCTCGG
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
195 3 0.02
196 148 0.91
197 12 0.07
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
GCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGAAGAGGCAGAA
TGCTCAAGCCGAGGACCGACCCGGTCCCCCCCCGTGTCTATCGATCCTGCTGCTGGTCTTGCTGC
T
Found at i:17581659 original size:159 final size:158
Alignment explanation
Indices: 17581303--17581684 Score: 410
Period size: 158 Copynumber: 2.4 Consensus size: 158
17581293 AACTCTGTCT
* * *
17581303 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
17581368 TCGGTCGGAGAGGTAGAATGCGTAAGCCGAGGACCGACCCGGTCCCCCCCCGTGTCTGTCGATCC
66 CCAATCGAAGAGGCAGAATGCGTAAGCCGAGGACCAACCCGGTCCCCCCCCGTGTCTGTCGATCC
* ** ** * *
17581433 TGCTGCTGCAACCCTCGGTCTGATCTGA
131 TGCTACCACAACCCTCAATCCGAGCTGA
* * * * * *
17581461 TCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
17581525 GCCAATCGAAGAGGCATAATGCGTAAGTCGAGGATCAACCCGGTCCCCCTCTGCGTG-CTGTCGG
65 GCCAATCGAAGAGGCAGAATGCGTAAGCCGAGGACCAACCCGGTCCCCC-C-CCGTGTCTGTCGA
** *
17581589 TCCTTTTACCACAACCCTCAATCCG-GCTAGG
128 TCCTGCTACCACAACCCTCAATCCGAGCT-GA
* * *
17581620 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
17581685 TCGGCCAGAG
Statistics
Matches: 180, Mismatches: 39, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 95 0.53
159 79 0.44
160 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAATCGAAGAGGCAGAATGCGTAAGCCGAGGACCAACCCGGTCCCCCCCCGTGTCTGTCGATCC
TGCTACCACAACCCTCAATCCGAGCTGA
Found at i:17581705 original size:159 final size:156
Alignment explanation
Indices: 17581303--17581754 Score: 430
Period size: 159 Copynumber: 2.9 Consensus size: 156
17581293 AACTCTGTCT
* *
17581303 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGG-GCGTGCGGGCGCTCAG
* * *
17581368 TCGGTCGGAGAGGT-AGAATGCGTAAGCCGAGGACCGACCCGGTCCCCC-C-CCGTGTCTGTCGA
65 TCGGTC-GAGA-GTCAGAATGCGTAAG-CGAGGATCAACCCGGTCCCCCTCTGCGTG-CTGTCGA
* ** ** * *
17581430 TCCTGCTGCTGCAACCCTCGGTCTGATCTGA
126 TCCTGCTACCACAACCCTCAATCCGAGCTGA
* * * * * * *
17581461 TCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGGCGTGCGGGCGCTCA
* ** * * *
17581525 GCCAATCGAAGAGGCATAATGCGTAAGTCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGT
64 GTCGGTCG-AGAGTCAGAATGCGTAAG-CGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGAT
** *
17581590 CCTTTTACCACAACCCTCAATCCG-GCTAGG
127 CCTGCTACCACAACCCTCAATCCGAGCT-GA
*
17581620 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGGCGTGCGGGCGCTCAG
* * * * * *
17581685 TCGGCCAGAGAGTCAGAATGCGTAAGCTGAGGATCTACTCGGTGCCCCT-TGCATGCTGTAGATC
65 TCGGTC-GAGAGTCAGAATGCGTAAGC-GAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATC
17581749 CTGCTA
128 CTGCTA
17581755 TCGTACCCTT
Statistics
Matches: 232, Mismatches: 52, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 107 0.46
159 116 0.50
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGGCGTGCGGGCGCTCAGT
CGGTCGAGAGTCAGAATGCGTAAGCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCAATCCGAGCTGA
Found at i:17581808 original size:26 final size:26
Alignment explanation
Indices: 17581779--17581831 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17581769 CTGGTCCGAT
*
17581779 CTTAGACT-GGGAATGAGCTCCGCATG
1 CTTAGACTAGGG-ATGAACTCCGCATG
17581805 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGACTAGGGATGAACTCCGCATG
17581831 C
1 C
17581832 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGCATG
Found at i:17583060 original size:26 final size:26
Alignment explanation
Indices: 17583009--17583061 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17582999 CCAGTTTGAT
*
17583009 CTTACACTGGGAATGAACTCGGTATG
1 CTTACACTGGGAATGAACTCGATATG
* * *
17583035 CTTAGACTGGGGATGAACTCTATATG
1 CTTACACTGGGAATGAACTCGATATG
17583061 C
1 C
17583062 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCGATATG
Found at i:17583771 original size:26 final size:26
Alignment explanation
Indices: 17583733--17583785 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17583723 GGCTCAAAAT
* *
17583733 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17583759 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17583785 C
1 C
17583786 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17584061 original size:159 final size:157
Alignment explanation
Indices: 17583759--17584261 Score: 537
Period size: 159 Copynumber: 3.2 Consensus size: 157
17583749 ACTCCGTATG
*
17583759 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
** * * ** *
17583824 CGGTCGAAGAGGCAGAATGCGCAAACCGGGGATCGGCCCAATCCCCCCCTACGTGCTGTCGATCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAAT-CCCCCTTACGTGCTACCGATCC
* *
17583889 TGCTGCCATAACCCCCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCGGTCCGGT-TGAT
* * *
17583918 CTTAGAC-TGGCAATGAACTCCATATGCAC-AAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 CTTAGACATGG-AATGAACTCCATATGC-CTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
17583981 GCCGACCTAAGAGGCATAATGCGCAAGCCAGTGATCGGTCCAATCCCCCTTTTCGTGCTACCGGT
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCC-TTACGTGCTACCGAT
* * * **
17584046 CCTGCTACCACAACCCTCGGTCTGATTGGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTT-GAT
* * * * **
17584077 CATAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCATGTTGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGA-GCGTGCGGGCGCTCAG
* * * * * *
17584141 CCGACCGGAGAGCCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTGCATGCTACCGATCC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTTACGTGCTACCGATCC
* *
17584206 TGCTGCCGCAACCCTCGATCCGGTTTGAT
130 TGCTGCCACAACCCTCGGTCCGG-TTGAT
*
17584235 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
17584262 TTAGACTGAG
Statistics
Matches: 281, Mismatches: 54, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 67 0.24
159 209 0.74
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTTACGTGCTACCGATCCT
GCTGCCACAACCCTCGGTCCGGTTGAT
Found at i:17584264 original size:26 final size:26
Alignment explanation
Indices: 17584235--17584287 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584225 CCGGTTTGAT
*
17584235 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCATATG
17584261 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGGATGAACTCCATATG
17584287 C
1 C
17584288 CTAGTCANNN
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCATATG
Found at i:17591336 original size:26 final size:26
Alignment explanation
Indices: 17591295--17591347 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17591285 TCGGTCTGAT
17591295 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17591321 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17591347 C
1 C
17591348 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17591713 original size:26 final size:26
Alignment explanation
Indices: 17591675--17591727 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17591665 TTGGTCTGAT
17591675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17591701 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17591727 C
1 C
17591728 GGGTGCTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17592154 original size:317 final size:316
Alignment explanation
Indices: 17591798--17592492 Score: 727
Period size: 317 Copynumber: 2.2 Consensus size: 316
17591788 ATGTGCTATT
* ** * *
17591798 GATCCTACTGCCGCAACCTTCATTTCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 GATCCTACTGCCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * * *
17591862 AGTCAACCCTTGAAACGAGTGCA-CGGTTGCTGAGTCG-GTCGGAGAGGCATAATGCACAAGCCG
65 AGTCAACCCACGAAACGA--GCATCGGGTGCTGAGCCGAAT-GAAGAGGCATAATGCACAAGCCG
* * * * * *
17591925 GGGATCAACCCGATCCCTCTCTACTTGCTATCGGTCCCACTGCCACAACCCTTGGTCCAGCTAGG
127 GGGATCAACCCGATCCCCCTCTACATACTACCAGTCCCACTGCCACAACCCTCGGTCCAGCTAGG
* * * ** * *
17591990 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACAAAACGGGTGTGCGGGCGTTCAG
192 GCCTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAG
* ** * *** **
17592055 -TCGGTCGGAGAGGCAGAATGTGCAAGCCGTGCATC-AGCCCGATTCCCC-CTGTGTACTGTC
257 CT-GGCCGGAGAGGCAGAATGCACAAGCCGGGCATCGA-CCCGA-TCCCCACTACATACTACC
* * * * *
17592115 GATCTTACTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
1 GATCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
17592180 GTTAACCCACGAAATGAGCATTCGGGTGCTGAGCCGAATGAAGAGGCATAATGCACAAGTCGGGG
66 GTCAACCCACGAAACGAGCA-TCGGGTGCTGAGCCGAATGAAGAGGCATAATGCACAAGCCGGGG
** * * * ** * ** * *
17592245 ATCGGCCTGATCCCCCTCTGCATACTGCCAGTCCCGTTGCTACAACCCTCGGTCTGGTTGGGGCC
130 ATCAACCCGATCCCCCTCTACATACTACCAGTCCCACTGCCACAACCCTCGGTCCAGCTAGGGCC
* * * *
17592310 TAGATATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACGGGCATGTAGGTGCTCAGCTG
195 TAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAGCTG
* *
17592375 GCCGGAGAGGCAGAATGCACAAGTCGGGCATCGACCCGATCCCCACTACATGCTACC
260 GCCGGAGAGGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCACTACATACTACC
* *
17592432 GATCCTGCTGCCGCAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
17592493 TTAGACTGGG
Statistics
Matches: 307, Mismatches: 64, Indels: 14
0.80 0.17 0.04
Matches are distributed among these distances:
315 3 0.01
316 5 0.02
317 295 0.96
318 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (316 bp):
GATCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAACGAGCATCGGGTGCTGAGCCGAATGAAGAGGCATAATGCACAAGCCGGGGA
TCAACCCGATCCCCCTCTACATACTACCAGTCCCACTGCCACAACCCTCGGTCCAGCTAGGGCCT
AGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAGCTGG
CCGGAGAGGCAGAATGCACAAGCCGGGCATCGACCCGATCCCCACTACATACTACC
Found at i:17592495 original size:26 final size:26
Alignment explanation
Indices: 17592466--17592518 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17592456 CCGATCTGAT
*
17592466 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17592492 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17592518 C
1 C
17592519 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17593388 original size:26 final size:26
Alignment explanation
Indices: 17593359--17593411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593349 CCGATTCGAT
*
17593359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
17593385 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17593411 C
1 C
17593412 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17593972 original size:26 final size:26
Alignment explanation
Indices: 17593934--17593986 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593924 CCGATTCGAT
*
17593934 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17593960 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17593986 C
1 C
17593987 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17594036 original size:196 final size:196
Alignment explanation
Indices: 17593567--17594068 Score: 553
Period size: 196 Copynumber: 2.6 Consensus size: 196
17593557 TCCGACTGGG
* *
17593567 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGTGGGCGCTCAG
* * **** * * * *
17593632 TCGGCTGGAGACGCAGAATGTGTAAGCCGGGGATCGACCTGGTCCACCCCTGCGTGCTGCCAATC
66 CCGGCTGGAGAGGCAGAATCCACAAGCCGAGGATCGACCTAGTCCACCCCTACGTGCTACCAATC
* * * * *
17593697 CTGCTACTGGTCCTGCGACCGCATCCCTCGGTCTATTCCAATCTTAGATTGGAATGAACTCCATA
131 CTGCTACTAGTCCTGCGACCGCAACCCTCGATCGATTCCAATCTTAGATAGGAATGAACTCCATA
17593762 T
196 T
* *
17593763 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GAGCGTGTGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCGAGCGTGTGGGCGCTCA
* * ** * * * * *
17593827 GCCGACCGGAGAGGTGGAATCCACAAGTCGAGGATCGGCCTAGTCC-CCCTTACGTGCTATCGAT
65 GCCGGCTGGAGAGGCAGAATCCACAAGCCGAGGATCGACCTAGTCCACCCCTACGTGCTACCAAT
* * * *
17593891 CCTGCTGCTAGTCCTGCTACCGTAACCCTCGATCCGATT-CGATCTTAGACTAGGAATGAACTCC
130 CCTGCTACTAGTCCTGCGACCGCAACCCTCGAT-CGATTCCAATCTTAGA-TAGGAATGAACTCC
*
17593955 TTAT
193 ATAT
* * * * *
17593959 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCAAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGTGGGCGCTCAG
* * ** *
17594024 CCGGTTGGAGAGGCAGAATGCGTAAG-CGAAGGATCGACCCAGTCC
66 CCGGCTGGAGAGGCAGAATCCACAAGCCG-AGGATCGACCTAGTCC
17594069 CTCCTGCGTT
Statistics
Matches: 251, Mismatches: 50, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
195 54 0.22
196 195 0.78
197 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGTGGGCGCTCAG
CCGGCTGGAGAGGCAGAATCCACAAGCCGAGGATCGACCTAGTCCACCCCTACGTGCTACCAATC
CTGCTACTAGTCCTGCGACCGCAACCCTCGATCGATTCCAATCTTAGATAGGAATGAACTCCATA
T
Found at i:17594471 original size:26 final size:26
Alignment explanation
Indices: 17594435--17594487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17594425 CTGATTCAAT
17594435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17594461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17594487 C
1 C
17594488 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17595008 original size:159 final size:158
Alignment explanation
Indices: 17594644--17595090 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 158
17594634 TACAATGGTC
* * ***
17594644 CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAATCGGAGAGGCAGAATG
1 CCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATG
* * * * * * ** * * * *
17594709 CGCAAGCC-AGGGATCGACTCGGTCCCCCCTACT-TGCTGTCGATCTTAG-TGTCGCAACCCTC-
66 CACAAGCCGA-AGATCGACCCGATCCACCTTA-TGTGCTACCAATCCT-GCTGCCACAACCCTCG
* ** *
17594770 AGTCCGATCT-GATCTTAGA-AGGGCAATGAACT
128 A-TCCG-GCTGGGGCTTAGACATGG-AATGAACT
* * * * *
17594802 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGTCGGAGAGGCAGAATG
1 CCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATG
* ** * * **
17594867 CACAAGCTGGGGATCGACCCGATCCCCCTCTGTGTGCTACCGGTCCTGCTGCCACAACCCTCGAT
66 CACAAGCCGAAGATCGACCCGATCCACCT-TATGTGCTACCAATCCTGCTGCCACAACCCTCGAT
17594932 CCGGCTGGGGCTTAGACATGGAATGAACT
130 CCGGCTGGGGCTTAGACATGGAATGAACT
* * * *
17594961 CCCTATGCCTAAGCCAACCCATGAAATGGGCTTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATG
1 CCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATG
* * * *
17595026 CGCAAGCCGAAGATCGACCCGATCCACCTTATGTGCTGCCAATCCTGCTGTCACAATCCTCGATC
66 CACAAGCCGAAGATCGACCCGATCCACCTTATGTGCTACCAATCCTGCTGCCACAACCCTCGATC
17595091 TGATCCGATC
Statistics
Matches: 239, Mismatches: 43, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
158 115 0.48
159 120 0.50
160 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
CCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATG
CACAAGCCGAAGATCGACCCGATCCACCTTATGTGCTACCAATCCTGCTGCCACAACCCTCGATC
CGGCTGGGGCTTAGACATGGAATGAACT
Found at i:17595129 original size:26 final size:26
Alignment explanation
Indices: 17595100--17595155 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17595090 CTGATCCGAT
17595100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17595126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17595152 CTTA
1 CTTA
17595156 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17595852 original size:26 final size:26
Alignment explanation
Indices: 17595823--17595874 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17595813 GCTCCAAATA
17595823 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACGT-GGAATGAACTCCGTATGC
17595849 TTAGACGTGGAATGAACTCCGTATGC
1 TTAGACGTGGAATGAACTCCGTATGC
17595875 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACGTGGAATGAACTCCGTATGC
Found at i:17597063 original size:26 final size:26
Alignment explanation
Indices: 17597025--17597077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597015 GGCTCAAAAT
*
17597025 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17597051 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17597077 C
1 C
17597078 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17597341 original size:157 final size:157
Alignment explanation
Indices: 17597050--17597549 Score: 474
Period size: 157 Copynumber: 3.2 Consensus size: 157
17597040 AACTCTGTAT
* * *
17597050 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
17597115 TCGGCCGGAGTGGCAGAATTCGCAAGCCGGGGATCGTCCCGGTCCCCTTACGTGCTGTCGATCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGTCCCGGTCCCCTTACGTGCTCTCGATCCT
* * *
17597180 GCTGCCACAACCTTCGGT-CTGATCCGA
131 GCTGCCACAACCCTCGGTCCAGCT-CGA
* * * * *
17597207 TCTTAGACTAT-GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
17597271 GCCGGCCGAAGAGGCATAATGCGTAAGCC-GGGATTGGT-CTGGTCTCCCTCTACGTGCTCT-GA
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA-TCGTCCCGGTC-CCCT-TACGTGCTCTCGA
* *
17597333 TCGC-GCTGCCACAACCCTCGGTCCAGCTGGG
127 TC-CTGCTGCCACAACCCTCGGTCCAGCTCGA
* * * * * *
17597364 GCTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCACGAAATGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * ** ** * * * * *
17597429 CCGGTTGGAGAGGCAGATTATGCAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGTCCCGGT-CCCCTTACGTGCTCTCGATCC
* *
17597494 TGCTGCCACAACCCTCGGTCCAGTTTGA
130 TGCTGCCACAACCCTCGGTCCAGCTCGA
* *
17597522 TCTTAAAC-TGAGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
17597550 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 25
0.77 0.15 0.07
Matches are distributed among these distances:
156 11 0.04
157 190 0.69
158 73 0.27
159 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGTCCCGGTCCCCTTACGTGCTCTCGATCCT
GCTGCCACAACCCTCGGTCCAGCTCGA
Found at i:17597850 original size:26 final size:26
Alignment explanation
Indices: 17597821--17597873 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597811 CTGGTTCGAT
17597821 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
* *
17597847 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17597873 C
1 C
17597874 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17597876 original size:298 final size:297
Alignment explanation
Indices: 17597340--17597893 Score: 765
Period size: 298 Copynumber: 1.9 Consensus size: 297
17597330 TGATCGCGCT
* * *
17597340 GCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGGCAACCCA
1 GCCACAACCCTCAGTCCAGCTGGGGCTTAAACATGGAATGAACTACCTATACCTAAGGCAACCCA
* * ** **** * *
17597405 CGAAATGGGCGTGTGGGTGCTCAGCCGGTTGGAGAGGCAGATTATGCAAGCCAAGGATCGGCCCG
66 CGAAATGGGCATGCGGGCACTCAGCCGACCAGAGAGACAGA-TATGCAAGCCAAGGATCGACCCG
* * * * *
17597470 ATCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTTTGATCTTAAACTGAGA
130 ATCCACCATGCGTGCTATCGATCCTGCTGCCACAACCCGCGATCCAGTTCGATCTTAAACTGAGA
17597535 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCG
195 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCG
17597600 TGTGGGTGCTCAACCCTCTGCGTGCTGTCGGTCCCACA
260 TGTGGGTGCTCAACCCTCTGCGTGCTGTCGGTCCCACA
*
17597638 GCCACAACCCTCAGTCC-GACTGGGGCTTAAACATGGAATGAACTACCTATGCCTAA-GCTAACC
1 GCCACAACCCTCAGTCCAG-CTGGGGCTTAAACATGGAATGAACTACCTATACCTAAGGC-AACC
*
17597701 CACGAAATGGGCATGCGGGCACTCAGTCGACCAGAGAGACAGA-ATGCGTAAGCCAAGGATCGAC
64 CACGAAATGGGCATGCGGGCACTCAGCCGACCAGAGAGACAGATATGC--AAGCCAAGGATCGAC
* * ** *
17597765 CC-AGTCCACCATGCGTGCTATCGATCCTGCTGTCGCAACCCGCGATCTGGTTCGATCTTAGACT
127 CCGA-TCCACCATGCGTGCTATCGATCCTGCTGCCACAACCCGCGATCCAGTTCGATCTTAAACT
* * * *
17597829 GGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
191 GAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACG
17597894 GGCATGCTTG
Statistics
Matches: 222, Mismatches: 29, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
296 4 0.02
297 4 0.02
298 214 0.96
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (297 bp):
GCCACAACCCTCAGTCCAGCTGGGGCTTAAACATGGAATGAACTACCTATACCTAAGGCAACCCA
CGAAATGGGCATGCGGGCACTCAGCCGACCAGAGAGACAGATATGCAAGCCAAGGATCGACCCGA
TCCACCATGCGTGCTATCGATCCTGCTGCCACAACCCGCGATCCAGTTCGATCTTAAACTGAGAA
TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGT
GTGGGTGCTCAACCCTCTGCGTGCTGTCGGTCCCACA
Found at i:17599058 original size:158 final size:158
Alignment explanation
Indices: 17598893--17599287 Score: 449
Period size: 158 Copynumber: 2.5 Consensus size: 158
17598883 TCTTAGACTG
* * * * * * * *
17598893 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGCTGGCCTG-A
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGG-CAGAA
* * * * * *
17598957 GAGGCATAATACGTAAGCCGATGATCGTCTCGGTCCCCCTC-TACGTGCTGCCAATCCCGCTGCC
65 GAGGCAGAATACGCAAACCGAAGATCGGCTCGGT--CCCTCATACGTGCTGCCAATCACGCTGCC
*
17599021 ACAACCCTCGATCCGGCTGGAGCTTACACAT
128 ACAACCCTCGATCCAGCTGGAGCTTACACAT
* * * *
17599052 GG-ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGCCACTCATCCGGCAGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGCAGAAG
* * * *
17599116 AGGCAGAATGCGCAAACCGAAGATCGGCTCGGTCCCTCATGCGTGCTGTCGATCACGCTGCCACA
66 AGGCAGAATACGCAAACCGAAGATCGGCTCGGTCCCTCATACGTGCTGCCAATCACGCTGCCACA
* * *
17599181 ACCCTCGGTCCAGCTGGGGCTTAGACAT
131 ACCCTCGATCCAGCTGGAGCTTACACAT
* * * *
17599209 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATC-GAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCG-GCAGAA
17599273 GAGGCAGAAT-CGCAA
65 GAGGCAGAATACGCAA
17599288 GTCGCAAATC
Statistics
Matches: 198, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
156 5 0.03
157 55 0.28
158 135 0.68
159 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGCAGAAG
AGGCAGAATACGCAAACCGAAGATCGGCTCGGTCCCTCATACGTGCTGCCAATCACGCTGCCACA
ACCCTCGATCCAGCTGGAGCTTACACAT
Found at i:17599308 original size:157 final size:157
Alignment explanation
Indices: 17598956--17599326 Score: 426
Period size: 158 Copynumber: 2.4 Consensus size: 157
17598946 AGCTGGCCTG
* * * * * * * * * * *
17598956 AGAGGCATAATACGTAAGCCGATGATCGTCTCGGTCCCCCTCTACGTGCTGCCAATCCCGCTGCC
1 AGAGGCAGAATGCGCAAACCGAAGATCGGCTCGGTCCCCC-ATGCGTGCTGTCGATCACGCTGCC
* * *
17599021 ACAACCCTCGATCCGGCTGGAGCTTACACATGGATGAACTCCCTATGCCTAAGCCAACCCATGAA
65 ACAACCCTCGATCCAGCTGGAGCTTACACATGGATGAACTCCCTATGCATAAGCCAACCCACGAA
* *
17599086 ATGGGCATGTGGCCACTCATCCGGCAGA
130 ATGGGCATGCGGCCACTCAGCCGGCAGA
*
17599114 AGAGGCAGAATGCGCAAACCGAAGATCGGCTCGGTCCCTCATGCGTGCTGTCGATCACGCTGCCA
1 AGAGGCAGAATGCGCAAACCGAAGATCGGCTCGGTCCCCCATGCGTGCTGTCGATCACGCTGCCA
* * *
17599179 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAA
66 CAACCCTCGATCCAGCTGGAGCTTACACATGG-ATGAACTCCCTATGCATAAGCCAACCCACGAA
* * * *
17599244 ATGGGCGTGCGGGCGCTCAGCCGATC-GA
130 ATGGGCATGCGGCCACTCAGCCG-GCAGA
** *
17599272 AGAGGCAGAAT-CGCAAGTCGCAA-ATCGGC-CTGGTCCCCCCTGCGTGCTGTCGATC
1 AGAGGCAGAATGCGCAAACCG-AAGATCGGCTC-GGTCCCCCATGCGTGCTGTCGATC
17599327 CTACTGTCGT
Statistics
Matches: 181, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 83 0.46
158 96 0.53
159 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
AGAGGCAGAATGCGCAAACCGAAGATCGGCTCGGTCCCCCATGCGTGCTGTCGATCACGCTGCCA
CAACCCTCGATCCAGCTGGAGCTTACACATGGATGAACTCCCTATGCATAAGCCAACCCACGAAA
TGGGCATGCGGCCACTCAGCCGGCAGA
Found at i:17599393 original size:26 final size:26
Alignment explanation
Indices: 17599364--17599413 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
17599354 GATCTTAGAC
*
17599364 TGGGAATGAACTCTGTATG-CTAAGAT
1 TGGG-ATGAAATCTGTATGCCTAAGAT
*
17599390 TGGGATGAAATTTGTATGCCTAAG
1 TGGGATGAAATCTGTATGCCTAAG
17599414 TCAACCCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (26 bp):
TGGGATGAAATCTGTATGCCTAAGAT
Found at i:17599764 original size:26 final size:25
Alignment explanation
Indices: 17599724--17599775 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17599714 TCGGTTCGAT
17599724 CTTAGACGGGAATGAAC-TCTGTATG
1 CTTAGACGGGAATGAACTTC-GTATG
*
17599749 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-GGGAATGAACTTCGTATG
17599775 C
1 C
17599776 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 15 0.62
27 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTTCGTATG
Found at i:17600175 original size:158 final size:158
Alignment explanation
Indices: 17599748--17600186 Score: 458
Period size: 158 Copynumber: 2.8 Consensus size: 158
17599738 AACTCTGTAT
* * * *
17599748 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
17599813 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGA-TCGACCCGGTCCCCCCCAGCATGCTGTCGAT
66 CCGATCGGAAAGGCAGAATGCACAAGCCGGGGATTAG-CCCGGT-CCCCCCTGCGTGCTGTCGAT
* ** *
17599877 CCTGCTACCGTAACCCTCGGTCTAGTCCGA
129 CCCGCTACCACAACCCTCGGTCCAGTCCGA
* ** * * * *
17599907 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** *
17599972 CCGATCGGAAAGGCATAATGCACAAGCCGGGCATCGGCCCAGTCCCCCTCTGCGTG-TGTC-AGT
66 CCGATCGGAAAGGCAGAATGCACAAGCCGGGGATTAGCCCGGTCCCCC-CTGCGTGCTGTCGA-T
* * *
17600035 CCCGCTACCACAACCCTCGGTCC-GGCTGGG
129 CCCGCTACCACAACCCTCGGTCCAGTC-CGA
* *
17600065 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-ATGCATACGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCGCTCA
* * * * *
17600129 GCC-AACTGGAAAGGCGGAATGCGCAAGCCGGGGATTAGTCGGGTCCCCCCTGCGTGCT
65 GCCGATC-GGAAAGGCAGAATGCACAAGCCGGGGATTAGCCCGGTCCCCCCTGCGTGCT
17600187 ACCGATCCTA
Statistics
Matches: 228, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 13 0.06
158 120 0.53
159 94 0.41
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGGAAAGGCAGAATGCACAAGCCGGGGATTAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAGTCCGA
Found at i:17600254 original size:26 final size:26
Alignment explanation
Indices: 17600225--17600276 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17600215 CGGTCTAAAT
* *
17600225 TTAGATTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCATATGC
* *
17600251 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGAGAATGAACTCCATATGC
17600277 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGC
Found at i:17607405 original size:26 final size:26
Alignment explanation
Indices: 17607362--17607414 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17607352 TTGGTTCGAT
17607362 CTTAGACTGGGAAGGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
* *
17607388 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAAGGAACTCCATATG
17607414 C
1 C
17607415 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:17608091 original size:296 final size:295
Alignment explanation
Indices: 17607540--17608126 Score: 743
Period size: 296 Copynumber: 2.0 Consensus size: 295
17607530 CCACTACAGG
* * *
17607540 TCCTGCTACCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGC
1 TCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGC
* * * * *
17607605 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGTGAAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCACTCGATCGAAGAGGCAAAATGCGCAAGCCGGGAAT
* * * * * *
17607670 TGGCTCGTCCCCCCTGTGTACTATCGATCCTACTGCTGCAACCCTCAGCCCAGTCTGATCTTAGA
131 CGACCCGTCCCCCCTGCGTACTATCGATCCTACTGCTGCAACCCTCAGCCCAGTATGATCTTACA
**
17607735 CTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAGCCGATCG
196 CTGAGAATGAACTCCGTATAACTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAGCCGATCG
17607800 GAGAGGCATAATGCACAAGCCGGGGATCGACCTGA
261 GAGAGGCATAATGCACAAGCCGGGGATCGACCTGA
* * * * * *
17607835 TCCTGCTGCCACAACCCTCATTCTGGCTAGGGCTTAGACATGGAATGATCTCTGTATGCCTAAGC
1 TCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGC
* * *
17607900 CAACCCACGAAACGAGCGTGCGGGCGCTCAACT-GATCGAAGAGGGAAAATGCGTAA-CACGGGG
66 CAACCCACGAAACGAGCGTGCGGGCGCTC-ACTCGATCGAAGAGGCAAAATGCGCAAGC-CGGGA
* * * * **
17607963 ATCGACCCGATCCCCCCTGCGTGCTGTCGATCTTACTG-TCGCAACCCTCGGTCTTA-TATGATC
129 ATCGACCCG-TCCCCCCTGCGTACTATCGATCCTACTGCT-GCAACCCTCAG-CCCAGTATGATC
* *
17608026 TTACACT-AGGAATGAACTCCGTATAACTAAGTCAACCCACAAAATGAGCGTGCGGGCGTTGAGC
191 TTACACTGA-GAATGAACTCCGTATAACTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAGC
* * ** *
17608090 CGGTCGGGGAGGCATAATGCGTAAGTCGGGGATCGAC
255 CGATCGGAGAGGCATAATGCACAAGCCGGGGATCGAC
17608127 TCGGTCCCCT
Statistics
Matches: 248, Mismatches: 38, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
294 1 0.00
295 114 0.46
296 131 0.53
297 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (295 bp):
TCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCACTCGATCGAAGAGGCAAAATGCGCAAGCCGGGAAT
CGACCCGTCCCCCCTGCGTACTATCGATCCTACTGCTGCAACCCTCAGCCCAGTATGATCTTACA
CTGAGAATGAACTCCGTATAACTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAGCCGATCG
GAGAGGCATAATGCACAAGCCGGGGATCGACCTGA
Found at i:17608223 original size:159 final size:157
Alignment explanation
Indices: 17607839--17608267 Score: 394
Period size: 158 Copynumber: 2.7 Consensus size: 157
17607829 ACCTGATCCT
* * * * *
17607839 GCTGCCACAACCCTCATTCTGGCTAGGGCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGTCAAC
* * * *
17607904 CCACGAAACGAGCGTGCGGGCGCTCAACTGATCGAAGAGGGAAAATGCGTAACACGGGGATCGAC
65 CCACAAAATGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAAAATGCGTAACACGGGGATCGAC
* *
17607969 CCGATCCCCCCTGCGTGCTGTCGATCTT
130 CCGATCCCCCCTGCATGCTGTCGATCTC
* * * * * ** * **
17607997 ACTGTCGCAACCCTCGGTCTTA-TATGATCTTACAC-TAGGAATGAACTCCGTATAACTAAGTCA
1 GCTGCCACAACCCTCAGTCTGACTA-GGGCTTAGACAT-GGAATGAACTCC-TATGCCTAAGTCA
* * * * ** * **
17608060 ACCCACAAAATGAGCGTGCGGGCGTTGAGCCGGTCGGGGAGGCATAATGCGTAAGTCGGGGATCG
63 ACCCACAAAATGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAAAATGCGTAACACGGGGATCG
* * *
17608125 ACTCGGTCCCCTTCTGCATGCTGTCGATCTC
128 ACCCGATCCCC-CCTGCATGCTGTCGATCTC
* * *
17608156 GCTGCCACAACCCTAAGTCCGACTAGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGTCGAC
1 GCTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGTCAAC
* * * * * * * *
17608221 CCACCAAATGGGCATGTGGGCACTCATCCGATCGAAGATGCAGAATG
65 CCACAAAATGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAAAATG
17608268 TGCAAGTCAG
Statistics
Matches: 205, Mismatches: 59, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 103 0.50
159 94 0.46
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCTATGCCTAAGTCAACC
CACAAAATGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAAAATGCGTAACACGGGGATCGACC
CGATCCCCCCTGCATGCTGTCGATCTC
Found at i:17609647 original size:26 final size:26
Alignment explanation
Indices: 17609618--17609672 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
17609608 CGATCGGTTA
17609618 TTAGAC-TGGGAATGAACTCCGCATGC
1 TTAGACAT-GGAATGAACTCCGCATGC
* * *
17609644 TTAGACATGGTATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGCATGC
17609670 TTA
1 TTA
17609673 AGGTAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGCATGC
Found at i:17609943 original size:158 final size:158
Alignment explanation
Indices: 17609717--17610142 Score: 362
Period size: 158 Copynumber: 2.7 Consensus size: 158
17609707 TCGGTCAGAA
* ** * * * * *
17609717 AGGCAGAATGCGCAAGCCGGGGACCGA-CCCAGT-CCCCCATACGTGCTGTCAATCCTGCTGCCA
1 AGGCAGAATGCGCAAGCTGGGGATGGATCCGA-TCCCCCCA-ACGTGCTGTCGATCCCGCTACCG
* * *
17609780 TAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGACT-AACTCAACCCATGA
64 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGACTAAAC-AAACCCACGA
* *
17609844 AACGGGCGTGC-GGACGCTGAGCCAACCGGAG
128 AACGGGCGTGCGGGA-GCTCAACCAACCGGAG
* * * * *
17609875 AGGCATAATGCGCAAGCTGGGGATCGGCT-CGATCCCCCCAACGTTCTGTCGGTCCCGCTGCCGC
1 AGGCAGAATGCGCAAGCTGGGGAT-GGATCCGATCCCCCCAACGTGCTGTCGATCCCGCTACCGC
* * * * ** * * *
17609939 AACCCCCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAACAAACCTACGA
65 AACCCTCGATCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCATATGACTAAACAAACCCACGA
* * ** *
17610002 AATGGGCGTGCGGGAGCTCAATCGGCTGGAG
128 AACGGGCGTGCGGGAGCTCAACCAACCGGAG
* * * * ** * *
17610033 AGGCAGAATGCGTAAGCTGGGGATTGATCCGGTCCCCGCTGCGTGCTGTCGATCCTGCTATCGCA
1 AGGCAGAATGCGCAAGCTGGGGATGGATCCGATCCCCCCAACGTGCTGTCGATCCCGCTACCGCA
* *
17610098 ACCATCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
66 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
17610143 CTTAGATGGG
Statistics
Matches: 207, Mismatches: 51, Indels: 20
0.74 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 186 0.90
159 17 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
AGGCAGAATGCGCAAGCTGGGGATGGATCCGATCCCCCCAACGTGCTGTCGATCCCGCTACCGCA
ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGACTAAACAAACCCACGAAAC
GGGCGTGCGGGAGCTCAACCAACCGGAG
Found at i:17612327 original size:26 final size:26
Alignment explanation
Indices: 17612276--17612328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17612266 CTGGTCCGAT
*
17612276 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17612302 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17612328 C
1 C
17612329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17612400 original size:343 final size:340
Alignment explanation
Indices: 17611774--17612701 Score: 974
Period size: 343 Copynumber: 2.7 Consensus size: 340
17611764 AACTCCGTAC
* ** * * **
17611774 GTTTAGACATGGAATCAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCATTCAG
1 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * *
17611839 TCGATC-GAAGAGGCAGAATACACAAGCCGGGATC-AGCTCGATCCCCCCCTGCGTGCTGTCGAT
66 CCGACCAG-AGAGGCAGAATACACAAGCCGGGATCGA-CTCG-T-CCCCCATGCGTGCTGTCGAT
** * * * *
17611902 CCTATTG-TCGCAACCCTCAGTTCGATCCAATCTTAGACCTGGAATGAACTCCGTATGCTTAGAC
127 CCTGCTGCT-GCAACCCTCAGCTCGGTCCGATCTTAGA-CTGGAATGAACTTCGTATGCTTAGAC
** * * ** * **
17611966 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAA-CGTGTGGGGTTTGAGTCGGTCG
190 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGCGGGGGCTGAGCCGGTAA
* * * *** *
17612030 GAGAGGCATAATGTGCAAGTCGGGGATCAGAC-CGGTCCTGTTCTACGTGTTGCTAG-TCCCGCT
254 AAGAGGCATAATGCGCAAGCCGGGGATC-GACTCGGTCCCCCTCTACGTGCTG-TAGATCCCGCT
* *
17612093 GCCACAACCCTTGGTCCAGTTGGG
317 GCCACAACCCTCGATCCAGTTGGG
*
17612117 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * *
17612182 CCGACCAGAGAGGTAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCTTGCGTGCTATCGATCC
66 CCGACCAGAGAGGCAGAATACACAAGCC-GGGATCGACTC-GTCCCCCATGCGTGCTGTCGATCC
*
17612247 TGCTGCTGCAACCCTCAGC-CTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTG
129 TGCTGCTGCAACCCTCAGCTC-GGTCCGATCTTAGACT-GGAATGAACTTCGTATGCTTAGACTG
** *
17612311 GTAATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAGCGTGCGGGGGCTGAGCCAGG-AAAA
192 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGGGCTGAGCC-GGTAAAA
* * * ** *
17612375 GAGGTATAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTCTGTGTGCTGTCGATCCCGCTGCCA
256 GAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTGTAGATCCCGCTGCCA
* *
17612440 CAACCCTCGATTCGGTTGGG
321 CAACCCTCGATCCAGTTGGG
* * * *
17612460 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * * *
17612525 CTGGCCAGAGAGGCAAAATTCGCAAGCTGGGGATTGACTCTGTCCCCCATACGTGCTGCCGATCC
66 CCGACCAGAGAGGCAGAATACACAAGC-CGGGATCGACTC-GTCCCCCATGCGTGCTGTCGATCC
* * * * *
17612590 TGCTACCGTAACCCTCAACTCGGTCTGATCTTAGACTAGGAATGAAC-TCTGTATGCTTAGACTG
129 TGCTGCTGCAACCCTCAGCTCGGTCCGATCTTAGACT-GGAATGAACTTC-GTATGCTTAGACTG
* * *
17612654 GGGATGAATTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGG
192 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGG
17612702 CGCTCAACCT
Statistics
Matches: 488, Mismatches: 83, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
342 11 0.02
343 461 0.94
344 14 0.03
345 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (340 bp):
GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATACACAAGCCGGGATCGACTCGTCCCCCATGCGTGCTGTCGATCCTG
CTGCTGCAACCCTCAGCTCGGTCCGATCTTAGACTGGAATGAACTTCGTATGCTTAGACTGGGGA
TGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGGGCTGAGCCGGTAAAAGAGGC
ATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTGTAGATCCCGCTGCCACAACC
CTCGATCCAGTTGGG
Found at i:17612649 original size:26 final size:26
Alignment explanation
Indices: 17612619--17612671 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17612609 TCGGTCTGAT
*
17612619 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
17612645 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17612671 C
1 C
17612672 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17613400 original size:27 final size:26
Alignment explanation
Indices: 17613352--17613402 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17613342 TTAGACTGGA
* *
17613352 AATGAACTCCGTATGCTTAGACAAGG
1 AATGAACTCCGTATCCTAAGACAAGG
17613378 AATGAACTCCGTATCCCTAAGACAA
1 AATGAACTCCGTAT-CCTAAGACAA
17613403 CCCACGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.22
Consensus pattern (26 bp):
AATGAACTCCGTATCCTAAGACAAGG
Found at i:17613603 original size:26 final size:26
Alignment explanation
Indices: 17613552--17613604 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17613542 CTGATCCGAT
*
17613552 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17613578 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17613604 C
1 C
17613605 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17613810 original size:210 final size:211
Alignment explanation
Indices: 17613339--17613864 Score: 788
Period size: 210 Copynumber: 2.5 Consensus size: 211
17613329 GTGGCTCAAA
** * * *
17613339 ATCTTAGACTGGAAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATCCCTAAGACAAC
1 ATCTTAGACTGGAAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
* * ** ** *
17613404 CCACGAAATGAGCGTGCGGGCACTCAACCGGTTAGAGAGGCCGATTGGAGAGGCATAATGCGCAA
66 CCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGGCCGATCAGAGAGGCACAATGCGCAA
* * *
17613469 GCCGGGGATCGACCCGGTCCCCCCCTTTCGTGCTGTCGATCCTACTGCTGGTTCTACTGCCACAA
131 GCCGGGGATCGACCCGATCCCCCCCTTTCATGCTGTCGATCCTACTACTGGTTCTACTGCCACAA
* *
17613534 CCCTCGATCTGATCCG
196 CCCTCAATCCGATCCG
* *
17613550 ATCTTAGACTGGGAATGAACT-TCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGAAATGAACTCT-ATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAA
*
17613614 CCCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGGCCGATCAGAGAGGCACAATGCGGA
65 CCCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGGCCGATCAGAGAGGCACAATGCGCA
* *
17613679 AGCCGGGGATCGACCCGAT-CCCCCCTTTCATGCTGTCGATCCTGCTACTGGTTCTGC-GACCAC
130 AGCCGGGGATCGACCCGATCCCCCCCTTTCATGCTGTCGATCCTACTACTGGTTCTACTG-CCAC
*
17613742 AACCCTCAATCCGGTCCG
194 AACCCTCAATCCGATCCG
17613760 ATCTTAGACTGGAAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
1 ATCTTAGACTGGAAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
* *
17613825 CCACGAAACGAGCGTGCAGGCACTCAGCCGGTCGAAGAGG
66 CCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGG
17613865 TAGAATGCGT
Statistics
Matches: 286, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
209 1 0.00
210 152 0.53
211 133 0.47
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (211 bp):
ATCTTAGACTGGAAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
CCACGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGGCCGATCAGAGAGGCACAATGCGCAA
GCCGGGGATCGACCCGATCCCCCCCTTTCATGCTGTCGATCCTACTACTGGTTCTACTGCCACAA
CCCTCAATCCGATCCG
Found at i:17614501 original size:26 final size:26
Alignment explanation
Indices: 17614463--17614515 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17614453 GGCTCAAAAT
17614463 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17614489 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17614515 C
1 C
17614516 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17614847 original size:159 final size:158
Alignment explanation
Indices: 17614488--17614991 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 158
17614478 AACTCCATAT
* * *
17614488 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * **
17614553 CAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCAATCC
66 CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAATCC
* * * *
17614618 TGCTGCCACAACCCTTGGTCCAGTCCGA
131 CGCTGCCACAACCCTCGATCCAATCCGA
* * * * * *
17614646 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAATCAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCA
* * * * * * * *
17614710 GCTGACC-GAAGAGGCATAATGTGCAAGCTGGGGATCGGCCCGTTCCCCTTCTACGTGCTACCGA
65 GCAGACCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTACGTGCTACCAA
* *
17614774 TCCCGCTGCCACAACCCTCGATCCGAAT-GGG
128 TCCCGCTGCCACAACCCTCGATCC-AATCCGA
* * ** * *
17614805 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAATGAGCTTTCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * * * * * *
17614870 CCGA-CAGGAGAGGTAGAATGCGCAAACCGGGGATCGGCCCGGT--CCCTTACGTGCCATCGATC
66 CAGACCA-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAATC
* * * * ** *
17614932 CTGCTACCTCAACCCTCGGTCCGGTCCCA
130 CCGCTGCCACAACCCTCGATCCAATCCGA
* *
17614961 TCTTAGAC-TGGGAATGAACTCTGTATGCCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTA
17614992 GACTAGGGAT
Statistics
Matches: 275, Mismatches: 62, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 57 0.21
157 4 0.01
158 93 0.34
159 115 0.42
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
CAGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTACCAATCC
CGCTGCCACAACCCTCGATCCAATCCGA
Found at i:17615003 original size:26 final size:26
Alignment explanation
Indices: 17614964--17615016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17614954 GGTCCCATCT
*
17614964 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
17614990 TAGACTAGGG-ATGAACTCCGTATGCC
1 TAGACT-GGGAATGAACTCCGTATGCC
17615016 T
1 T
17615017 TAGTCTACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:17615860 original size:26 final size:26
Alignment explanation
Indices: 17615831--17615886 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17615821 TTGGTTCGAT
*
17615831 CTTAGACT-GGGAATGAACTTCGTATA
1 CTTAGACTAGGG-ATGAACTCCGTATA
*
17615857 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATA
17615883 CTTA
1 CTTA
17615887 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATA
Found at i:17616159 original size:171 final size:170
Alignment explanation
Indices: 17615869--17616191 Score: 364
Period size: 171 Copynumber: 1.9 Consensus size: 170
17615859 TAGACTAGGG
* * * * *
17615869 ATGAACTCCGTATGCTTAAGTCAACCCATAAAATGAGCGTGCGGTGCTCAACTGGCAGGAGAGGC
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGTGCTCAACTAGCAGGAGAGGC
** * *
17615934 ACAATGTGCCACCCGAGGATCGACCCGATCCCCTTCTGCGTGCTGCCAATCTTGCTAC-AGGTCC
66 ACAATGCACAACCCGAGGATCGACCCGATCCCCTCCTGCGTGCTGCCAATCTTGCTACTA-GTCC
*
17615998 TGCTGCCACAACCCTCGGTTCGGCTGGGGCTTACACATGGA
130 TGCTGCCACAACCCTCAGTTCGGCTGGGGCTTACACATGGA
*
17616039 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACAGGTGCTCAA-TCAGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTAC-GGTGCTCAACT-AGCAGGAGAG
* * * * * * * * * * *
17616103 GTAGAATGCATAAGCCGAGGATCGGCCTGATCCTCC-CCTGTGTGTTGTCGATCTTGCTGCTAGT
64 GCACAATGCACAACCCGAGGATCGACCCGATCC-CCTCCTGCGTGCTGCCAATCTTGCTACTAGT
* **
17616167 CCTGCTGTCGTAACCCTCAGTTCGG
128 CCTGCTGCCACAACCCTCAGTTCGG
17616192 TCTGATCTTA
Statistics
Matches: 124, Mismatches: 25, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
170 39 0.31
171 82 0.66
172 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGTGCTCAACTAGCAGGAGAGGC
ACAATGCACAACCCGAGGATCGACCCGATCCCCTCCTGCGTGCTGCCAATCTTGCTACTAGTCCT
GCTGCCACAACCCTCAGTTCGGCTGGGGCTTACACATGGA
Found at i:17616354 original size:867 final size:853
Alignment explanation
Indices: 17614461--17616755 Score: 2313
Period size: 867 Copynumber: 2.7 Consensus size: 853
17614451 GTGGCTCAAA
* * *
17614461 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAAC
1 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * **
17614526 CCACGAAACGAGTGTGCGGGCACTCAGCAGGCCA-GAGAGGCAGAATGCGCAAGCCGGGGATCGA
66 CCATGAAACGAGCGTGCGGGCGCTCAGC-CGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * * * *
17614590 CTCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACT
130 CTCGAT-CCCCCTGCGTGATGTCAATCCTACT-ACGCAACCCTCGGTCTAGTCCGATCTTAGACT
* ** * *
17614655 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAATCAAGCGTGCGGGCGCTGAG-CTGACCGA
193 GGGAATGAACTCCGTATGCCTAAGTCAACCCAAAAAT-GAGCGTGCGGGCGCTGAGCCTG-CAG-
* * ** * *
17614719 AGAGGCATAATGTGCAAGCTGGGGATCGGCCCGTTCCCCTTCTACGTGCTACCGATCCCGCTGCC
255 AGAGGCATAATG-GCAAGC--GGGATCGGCCCGGTCCCC-TCTACATGCTGTCGGTCCCGCTACC
* * * *
17614784 ACAACCCTCGATCCGAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGA
316 ACAACCCTTGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * *
17614849 AATGAGCTTTCGGGCACTCAGCCGACAGGAGAGGTAGAATGCGCAAACCGGGGATCGGCCCGGT-
381 AACGGGCTTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTC
* * * * * * *
17614913 -CCCTTACGTGCCATCGATCCTGCTACCTCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATG
446 CCCCTTGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATG
* * *
17614977 AAC-TCTGTATGCCTAGACTAGGGATGAACTCCGTATGCCTT-AGTCTACCCAAGAAACGAGCGT
511 AACTTC-GTATGCTTAGACTAGGGATGAACTCCGTATG-CTTAAGTCAACCCAA-AAATGAGCGT
* ** *** * *
17615040 ACGGGTGCTCAGTCGACCGGAGACGCCTATCAGAGAGGCGTAATGCGCAAGTTGGGGATCAACTC
573 GC-GGTGCTCA---GACC-GAGA-GCCTA-CAGAGAGGCACAATGCGCAACCCGAGGATCAACCC
* * *
17615105 GATCCCTCTCTGCATGCTACCGATCCTGCTACAACAACCCTCGATTTGGCTGGGGCTTAGACAAG
631 GATCCCTCTCTGCATGCTACAGATCCTGCTACAACAACCCTCGATTCGGCTGGGGCTTACACAAG
* * *** *
17615170 GAATGAACTTCGTATGCCTAAGCCAACCCATAAAACAAGTGTGTGGGCGCTCAGTCGACCGGAGA
696 GAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTACAGGCGCTCAATCGACCGGAGA
*
17615235 GGTAGAATACACAAGCCAGGGATCGACTCAGTCCCCCCTGCGTGCTGTCGATCCTGTGGCTGGTC
761 GGTAGAATACACAAGCCAGGGATCGACTCAGTCCCCCCTGCGTGCTGTCGATCCTGTGGCTAGTC
* *
17615300 CTGTTGTCACAACCCTCGGTTCGATCCG
826 CTGCTGTCACAACCCTCAGTTCGATCCG
* *
17615328 ATCATAGACTAGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * * * * *
17615393 CCATGAAATGAGCATACGGGCGCACAGTCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATC-AG
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-
* *
17615457 CTCGATCCCTCCTGTGT-ACTGTCGATCCTACTATCGCAACCCTCGGTCT-GATCCGATCTTAGA
130 CTCGATCCC-CCTGCGTGA-TGTCAATCCTACTA-CGCAACCCTCGGTCTAG-TCCGATCTTAGA
* ** * *
17615520 CTGGGAATGATCTTTGTATGCCTAAGTAAACCCATAAAATGAGCGTGTGGGCGCTGAGCCTGCTA
191 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AAAATGAGCGTGCGGGCGCTGAGCCTGC-A
*
17615585 GCGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCTCCTCTACATGCTGTCGGTCCCGCTAC
254 GAGAGGCATAATG-GCAAG-CG-GGATCGGCCCGGTCC-CCTCTACATGCTGTCGGTCCCGCTAC
* * *
17615650 CACAACCCTT-AGTCCGACTGGGGCATAGACACGGAACGAACTCCCTATGCCTAAGCCAACCCAT
315 CACAACCCTTGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
17615714 GAAACGGGCTTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCATGCCAGGGATCGGCTCGA
379 GAAACGGGCTTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGG
* * * *
17615779 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGCGACCCTCGATTTGGTTCGATCTTAGACTGGGAA
444 TCCCCCTTGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAA
*
17615844 TGAACTTCGTATACTTAGACTAGGGATGAACTCCGTATGCTTAAGTCAACCCATAAAATGAGCGT
509 TGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCTTAAGTCAACCCA-AAAATGAGCGT
* * * * *
17615909 GCGGTGCTCA-A-C-TG-G-C-A-GGAGAGGCACAATGTGCCACCCGAGGATCGACCCGATCCCC
573 GCGGTGCTCAGACCGAGAGCCTACAGAGAGGCACAATGCGCAACCCGAGGATCAACCCGAT--CC
* * * *
17615967 TTCTGCGTGCTGCCAATCTTGCTACAGGTCCTGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAC
636 --CT-C-T-CTG-C-A---TGCTACAGATCCTGCTACAACAACCCTCGATTCGGCTGGGGCTTAC
* * *
17616032 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACAGGTGCTCAATC-AGC
691 ACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTACAGGCGCTCAATCGA-C
* * * * * * *
17616096 CGGAGAGGTAGAATGCATAAGCC-GAGGATCGGC-CTGATCCTCCCCTGTGTGTTGTCGATCTTG
755 CGGAGAGGTAGAATACACAAGCCAG-GGATCGACTCAG-TCC-CCCCTGCGTGCTGTCGATCCTG
** * *
17616159 CT-GCTAGTCCTGCTGTCGTAACCCTCAGTTCGGTCTG
817 -TGGCTAGTCCTGCTGTCACAACCCTCAGTTCGATCCG
* * * * *
17616196 ATCTTAGATTGGGAATGAACTTTGTATGCTTACACATGGAATGAATTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * * * *
17616261 CCGTGAAACGAGCGTGCGGGGGCTCAACCGATAGGAAAGGCAGAATACGTAAGCTGGGGATCGAC
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
* * **
17616326 CCGATCCCCCTGCGTGATGTCAATCCTACTACTGCAACCCTCGATCTAGTTTGATCTTAGACTGG
131 TCGATCCCCCTGCGTGATGTCAATCCTACTAC-GCAACCCTCGGTCTAGTCCGATCTTAGACTGG
* * * * * *
17616391 GAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGTGTGGGGGTGTTGAGCCTGCCAGAGA
195 GAATGAACTCCGTATGCCTAAGTCAACCCA-AAAATGAGCGTGCGGGCGCTGAGCCTG-CAGAGA
* * *
17616456 GGCATAAT---------G-T-------G--CCCTCTACCTGCTGTCGGTCTCACTACCACAACCC
258 GGCATAATGGCAAGCGGGATCGGCCCGGTCCCCTCTACATGCTGTCGGTCCCGCTACCACAACCC
* *
17616502 TTGATCCGACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATAAAACGGG-
323 TTGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC
* * * * **
17616566 TGTGCGGGCGCTCAGCC-AGCCGGAGAGGCAGAATGTC-CAAGTCGGGGATCGGTTTGGTCCTTC
388 T-TGCGGGCGCTCAGCCGA-CCGGAGAGGTAGAATG-CGCAAGCCGGGGATCGGCTCGGTCCCCC
** *
17616629 TTGCGTGCTATCGATCCTGCTGTCGCAACCCTC-AGTCTGGTTCGATCTTAGACTGGGAATGCAC
450 TTGCGTGCTATCGATCCTGCTACCGCAACCCTCGA-TCTGGTTCGATCTTAGACTGGGAATGAAC
* * * *
17616693 TCCGTATGCTTAGACT-GGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCG
514 TTCGTATGCTTAGACTAGGG-ATGAACTCCGTATGCTTAAGTCAACCCA-AAAATGAGCGTGCG
17616756 AGCATTGAGC
Statistics
Matches: 1192, Mismatches: 190, Indels: 115
0.80 0.13 0.08
Matches are distributed among these distances:
843 6 0.01
844 244 0.20
845 3 0.00
847 1 0.00
854 1 0.00
855 27 0.02
857 3 0.00
858 1 0.00
859 3 0.00
860 1 0.00
861 2 0.00
862 3 0.00
863 2 0.00
864 2 0.00
866 13 0.01
867 587 0.49
868 184 0.15
869 106 0.09
870 3 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (853 bp):
ATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
TCGATCCCCCTGCGTGATGTCAATCCTACTACGCAACCCTCGGTCTAGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCAAAAATGAGCGTGCGGGCGCTGAGCCTGCAGAGAGGC
ATAATGGCAAGCGGGATCGGCCCGGTCCCCTCTACATGCTGTCGGTCCCGCTACCACAACCCTTG
ATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTG
CGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTGCGT
GCTATCGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTTCGTAT
GCTTAGACTAGGGATGAACTCCGTATGCTTAAGTCAACCCAAAAATGAGCGTGCGGTGCTCAGAC
CGAGAGCCTACAGAGAGGCACAATGCGCAACCCGAGGATCAACCCGATCCCTCTCTGCATGCTAC
AGATCCTGCTACAACAACCCTCGATTCGGCTGGGGCTTACACAAGGAATGAACTCCGTATGCCTA
AGCCAACCCATAAAACAAGCGTACAGGCGCTCAATCGACCGGAGAGGTAGAATACACAAGCCAGG
GATCGACTCAGTCCCCCCTGCGTGCTGTCGATCCTGTGGCTAGTCCTGCTGTCACAACCCTCAGT
TCGATCCG
Found at i:17616711 original size:26 final size:26
Alignment explanation
Indices: 17616675--17616727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17616665 CTGGTTCGAT
*
17616675 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17616701 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17616727 C
1 C
17616728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17617362 original size:26 final size:26
Alignment explanation
Indices: 17617332--17617383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17617322 TGGTCTGATA
*
17617332 TTAGAC-TGGGAATGAATTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
17617358 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
17617384 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:17617686 original size:26 final size:26
Alignment explanation
Indices: 17617657--17617709 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17617647 CCGATCCGAT
*
17617657 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
17617683 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
17617709 C
1 C
17617710 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:17618030 original size:26 final size:26
Alignment explanation
Indices: 17618001--17618051 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17617991 GATTCGATCC
17618001 TAGACTGG-GAATGAACTCCGTATGCT
1 TAGACTGGAG-ATGAACTCCGTATGCT
17618027 TAGACTGGAGATGAACTCCGTATGC
1 TAGACTGGAGATGAACTCCGTATGC
17618052 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGAGATGAACTCCGTATGCT
Found at i:17619241 original size:26 final size:26
Alignment explanation
Indices: 17619203--17619255 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17619193 CTGGTTCGAT
17619203 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17619229 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17619255 C
1 C
17619256 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17619570 original size:158 final size:156
Alignment explanation
Indices: 17619228--17619728 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 156
17619218 AACTCCATAT
*
17619228 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
** * ** * * *
17619293 CGACCGAAGAGGCAGAATGCGCAAGCAG-GGAATCAACTCGGTCCCCCCTACGTGCTGTCGTTCC
65 CGGTCGAAGAGGCAGAATGCGCAAGCCGAGG-ATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
17619357 TGCTGCTGCAACCCTCGATCCAGTCTGA
129 CGCTGCCACAACCCCCGATCCAGGCTGA
* ** * * * * * *
17619385 TCTTAGACTGGGAATGAACTATGTATGCCAAAGTCAACCCATAAAATGAGCGTGTGGGCACTCAC
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * *
17619450 CGGTCGGAGAGGCATAATGCGCAAGCCGAGGACCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
65 CGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * *
17619515 CGCTGCCACAACCCCCGGTTC-GGCTGGG
129 CGCTGCCACAACCCCCGATCCAGGCT-GA
* * *
17619543 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * *
17619608 TCGGTCGAAGAGGTAGAATGCGCAAGCCAAGGATCGGTCTGGTCCCCCCTGCGTGCTGTCGGTCC
65 -CGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * ** * *
17619673 TGCTACCGTAACCCTCGGTCC-GGTCTGA
129 CGCTGCCACAACCCCCGATCCAGG-CTGA
* * *
17619701 TCTTAGACTGGGAATAAACTCCATATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
17619729 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 61, Indels: 15
0.78 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 91 0.33
158 141 0.51
159 42 0.15
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAAC
GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCG
CTGCCACAACCCCCGATCCAGGCTGA
Found at i:17620513 original size:26 final size:27
Alignment explanation
Indices: 17620471--17620524 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
17620461 GGCTGAAAAT
*
17620471 CTTAGACCTGGGAATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
17620498 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
17620524 C
1 C
17620525 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTAGACATGGGAATGAACTCCGTATG
Found at i:17620853 original size:159 final size:158
Alignment explanation
Indices: 17620497--17620990 Score: 421
Period size: 158 Copynumber: 3.1 Consensus size: 158
17620487 AACTCCGTAT
** *
17620497 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGCAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
* * * **
17620562 TCGACCAGAGAGGTAGAATGCACAAGTCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCAATTG
66 CCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACTCGGTCCCCCCTACGTGCTGCCAATCC
* * *
17620627 TGGTGTCACAACCCTCGGTCTGGTCTGA
131 TGCTGTCACAACCCTCAGTCCGGTCTGA
* * * * * *
17620655 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCA
** * * *
17620719 GCCGA-TTGAAGAGGCATAATGCGCAAG-CTGGGGATC-AGCTCGGTCCCCCTCTACGTGCTGCC
65 GCCGACCAG-AGAGGCAGAATGCACAAGTC-AGGGATCGA-CTCGGTCCCCC-CTACGTGCTGCC
* * *
17620781 TATCCTGCTG-CTACAACCTTCAGTCCGG-CTAGC
126 AATCCTGCTGTC-ACAACCCTCAGTCCGGTCT-GA
* * * ** *
17620814 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
* * * * * * ** * *
17620879 CCGACCAAAGAGGCA-AATGCGCAAGCCGGGGATCGGCTCGATCCCTACTGCGTGCTGCCGATCC
66 CCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACTCGGTCCCCCCTACGTGCTGCCAATCC
* * * *
17620943 TACAGCCACAACCATC-GATCCGGTCTGA
131 TGCTGTCACAACCCTCAG-TCCGGTCTGA
* *
17620971 TCTTGGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
17620991 TTGTATGCTT
Statistics
Matches: 269, Mismatches: 52, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 52 0.19
158 120 0.45
159 94 0.35
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
CCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACTCGGTCCCCCCTACGTGCTGCCAATCC
TGCTGTCACAACCCTCAGTCCGGTCTGA
Found at i:17621716 original size:26 final size:26
Alignment explanation
Indices: 17621680--17621732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17621670 CTGGTCCTAT
17621680 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
17621706 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17621732 C
1 C
17621733 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17622407 original size:26 final size:26
Alignment explanation
Indices: 17622378--17622430 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17622368 CCGGTCCAAT
17622378 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17622404 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17622430 C
1 C
17622431 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17623074 original size:26 final size:26
Alignment explanation
Indices: 17623038--17623090 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17623028 CTAGTCTGAT
*
17623038 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17623064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17623090 C
1 C
17623091 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17623795 original size:25 final size:26
Alignment explanation
Indices: 17623746--17623797 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
17623736 CTGGTCTGAT
*
17623746 CTTAGACTGGGAATGAACCCTGTATG
1 CTTAGACTAGGAATGAACCCTGTATG
17623772 CTTAGACTAGG-ATGAACTCC-GTATG
1 CTTAGACTAGGAATGAAC-CCTGTATG
17623797 C
1 C
17623798 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCTGTATG
Found at i:17624085 original size:171 final size:170
Alignment explanation
Indices: 17623771--17624105 Score: 392
Period size: 171 Copynumber: 2.0 Consensus size: 170
17623761 AACCCTGTAT
** * * * *
17623771 GCTTAGACTAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGTGTGCAGGTGCTCAGC
1 GCTTAGACTAGGATGAACTCCGTACACCAAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
* * * * **
17623836 CGGTCGGAGAGGCATAATTCACAAGTCAGGGATCAGCTCGGTCCCCCTCTGTGTGCTGTCGATCC
66 CGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCAGCCCGATCCCCCTCTGTGTGCTACCGATCC
* *
17623901 CACTGTCGGTCCTGCTGCCACAACCTTCGATCTGGTTAGG
131 CACTGTCGGTCCTGCTACCACAACCTTCAATCTGGTTAGG
* *
17623941 GCTTAGAC-ATGGAATGAACTCCGTACACCAAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACTA-GG-ATGAACTCCGTACACCAAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCA
* **
17624005 GTCGG-CTGGAGAGGCAAAATGCGTAAGTC-GAGGATCAGCCCGATCCCCC-CTTGTGTGCTACC
64 GCCGGTC-GGAGAGGCAAAATGCACAAGTCAG-GGATCAGCCCGATCCCCCTC-TGTGTGCTACC
* *
17624067 GATCCTACTG-CTGGTCCTGCTACCGCAACCTTCAATCTG
126 GATCCCACTGTC-GGTCCTGCTACCACAACCTTCAATCTG
17624106 ATCCGATCTT
Statistics
Matches: 138, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
169 1 0.01
170 14 0.10
171 123 0.89
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (170 bp):
GCTTAGACTAGGATGAACTCCGTACACCAAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
CGGTCGGAGAGGCAAAATGCACAAGTCAGGGATCAGCCCGATCCCCCTCTGTGTGCTACCGATCC
CACTGTCGGTCCTGCTACCACAACCTTCAATCTGGTTAGG
Found at i:17624142 original size:26 final size:26
Alignment explanation
Indices: 17624113--17624165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17624103 CTGATCCGAT
17624113 CTTAGATC-GGGAATGAACTCCGTATG
1 CTTAGA-CAGGGAATGAACTCCGTATG
* *
17624139 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17624165 C
1 C
17624166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17624438 original size:158 final size:158
Alignment explanation
Indices: 17624142--17624438 Score: 342
Period size: 158 Copynumber: 1.9 Consensus size: 158
17624132 CCGTATGCTT
* * ** *
17624142 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACAGA
* * * * **
17624207 CCGGAGAGGCAAAACGCGTAAGCCGGGGATTGGCTCGATCCCCCCTACGTGCTGTCGATCTTGCT
66 CCGAAGAGGCAAAACGCGCAAGCCAGGGATTGGCGCGATCCCCCCTACGTGCTGTCGATCCCGCT
* *
17624272 ATCGCAACCGTCAGTTCAGCCTGATCCG
131 ACCACAACCGTCAGTTCAGCCTGATCCG
* * * * * * *
17624300 AGACTTGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCATGCGGGCATTGAGCAGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACAGA
* * * * * * *
17624365 CCGAAGAGGCATAATGCGCAAGCTAGGGATTGGCGCGATCCCCTCTGCGTGCTGTCGGTCCCGTT
66 CCGAAGAGGCAAAACGCGCAAGCCAGGGATTGGCGCGATCCCCCCTACGTGCTGTCGATCCCGCT
*
17624430 GCCACAACC
131 ACCACAACC
17624439 CTTGGTCCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
158 111 1.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACAGA
CCGAAGAGGCAAAACGCGCAAGCCAGGGATTGGCGCGATCCCCCCTACGTGCTGTCGATCCCGCT
ACCACAACCGTCAGTTCAGCCTGATCCG
Found at i:17626488 original size:26 final size:26
Alignment explanation
Indices: 17626450--17626502 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626440 TTGGTCTGAT
17626450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17626476 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17626502 C
1 C
17626503 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17626634 original size:196 final size:196
Alignment explanation
Indices: 17626279--17626911 Score: 645
Period size: 196 Copynumber: 3.3 Consensus size: 196
17626269 TCCGGCTGGG
* * *
17626279 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * * * * * * * *
17626344 TCGGTTGAAGAGGTAAAATGCGCAAGCCAGGGATCGACCC-AGTCCCCCCTGCGTGTTGTCTATC
66 CCGATTGGAGAAGTAAAATGCGTAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTGCCGATC
* * * *
17626408 CTGCTGCTGGTCCTACTACCGTAGCCCTCAGTTTGG-TCTGATCTTAGACTGGGAATGAACTCCG
130 CTACTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTTC-GATCTTAGACTGGGAATGAACTCCG
17626472 TAT
194 TAT
* * *
17626475 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
* * *
17626540 CCAATTGGAGAAGTAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTGCCGATCC
66 CCGATTGGAGAAGTAAAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
* **
17626605 TACTGCTGGTCCTGCTGTCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
131 TACTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
17626670 T
196 T
* * * * **
17626671 GCTTAGACATGGAGTGAACTACC-TATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
** ** * **
17626735 ACCGATCAGA-AAGATAAAATATGTAAGCCAGGGATCGGTCCGATCCCCCCTATGTGCTGCCGAT
65 ACCGATTGGAGAAG-TAAAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
* * * * * * *
17626799 -C--CTGC--G--------CCGCAACCCTCGGTCCGATCCAATCTTAAACTGGGAATGAACTCCT
129 CCTACTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCCG
17626851 TAT
194 TAT
* * * * *
17626854 GCTTAGAC-TGGGGATGAACTCTGTCTGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG
17626912 TGCTCAGCCG
Statistics
Matches: 372, Mismatches: 59, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
182 2 0.01
183 88 0.24
191 1 0.00
193 4 0.01
195 4 0.01
196 268 0.72
197 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAA
CCGATTGGAGAAGTAAAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
TACTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:17626688 original size:26 final size:26
Alignment explanation
Indices: 17626646--17626698 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
17626636 TCGGTTCGAT
17626646 CTTAGACTGGGAATGAACT-CCGTATG
1 CTTAGACTGGGAATGAACTACC-TATG
*
17626672 CTTAGACAT-GGAGTGAACTACCTATG
1 CTTAGAC-TGGGAATGAACTACCTATG
17626698 C
1 C
17626699 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACCTATG
Found at i:17628908 original size:26 final size:26
Alignment explanation
Indices: 17628870--17628922 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17628860 CTGGTTCGAT
17628870 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17628896 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
17628922 C
1 C
17628923 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17632099 original size:26 final size:26
Alignment explanation
Indices: 17632062--17632113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17632052 GGTCTGATCT
17632062 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17632088 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
17632114 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17632371 original size:193 final size:196
Alignment explanation
Indices: 17631889--17632409 Score: 536
Period size: 193 Copynumber: 2.7 Consensus size: 196
17631879 TCCGGCTGGG
* * ** * *
17631889 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* ** * * * * * * * * * *
17631954 TCGGT-TGAAGAGGTAAAATGCGCAAGCCAGGGATCGACCCAAGTCCCCCCTGCGTGTTGTCTAT
66 CCAATCAG-AGAAGTAAAATACGTAAGCCAGGGATCGGCCCGA-TCCCCCCTACGTGCTGCCGAT
* * *
17632018 CCTCTGCTGGTCCTACTACCGTAGCCCTCAGTTTGGTCTGATCTTTAGACTGGGAATGAACTCCG
129 CCTCTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTCTGATCTTTAGACTGGGAATGAACTCCG
17632083 TAT
194 TAT
* * * *
17632086 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
** * * * *
17632151 CCAATTGGAGAAGTAGAATGCGTAAGCCA-GGATCGGCCCGATCCCTCCTGCGTGC-GCCGATCC
66 CCAATCAGAGAAGTAAAATACGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
* **
17632214 TACTGCTGGTCCTGCTGTCGCAACCCTCAGTTCGGT-TCGATC-TTAGAC-GGGAATGAACTCCG
131 T-CTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTCT-GATCTTTAGACTGGGAATGAACTCCG
17632276 TAT
194 TAT
* * * **
17632279 GCTTAGACATGGAGTGAACTACC-TATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * *
17632343 ACCGATCAGA-AAGATAAAATATGTAAGCCAGGGATCGGTCCGATCCCCCCTATGTGCTGCCGAT
65 ACCAATCAGAGAAG-TAAAATACGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGAT
17632407 CCT
129 CCT
17632410 GCGCCGCAAC
Statistics
Matches: 273, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
192 3 0.01
193 89 0.33
194 38 0.14
195 53 0.19
196 10 0.04
197 79 0.29
198 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCAATCAGAGAAGTAAAATACGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
TCTGCTGGTCCTACTACCGCAACCCTCAGTTCGGTCTGATCTTTAGACTGGGAATGAACTCCGTA
T
Found at i:17634149 original size:158 final size:157
Alignment explanation
Indices: 17633680--17634149 Score: 431
Period size: 158 Copynumber: 3.0 Consensus size: 157
17633670 TGCCTAAGAA
** * * *
17633680 AACCCACGAAACGAGCGTGCAGGCACTCAACCGGCTGGAGAGCCATAATGTGCAAGTCGGGGATC
1 AACCCACGAAACGAGCGTGCA-GCACTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATC
* * * * * ** * *
17633745 GACCCAGTGCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCTTCAGTCTGATTCGATCTTAGA
65 GACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGA
* * * *
17633810 TTGGGAATGAACTCCGTATGCCTAAGTC
130 CTGGGAATGAACTCCATATGCTTAAGCC
* * * * * ** * * * *
17633838 AACCCAGGAAATGAGTGTGCGGGCACTGAGTCAGCGA-AGAGGCAGAATGCGCAAGCCGGGGATC
1 AACCCACGAAACGAGCGTGC-AGCACTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATC
* * * * * * ** *
17633902 GACCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGATCTGATTGGGGCATAG
65 GACCCGGTCCCCC-CTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAG
** * * *
17633967 ACAAGGAATGATCTCCCTACGCTTAAGCC
129 ACTGGGAATGAACTCCATATGCTTAAGCC
* * *
17633996 AACCCATGAAACAAGCGTGTCAGCGCTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATC
1 AACCCACGAAACGAGCGTG-CAGCACTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATC
* * * *
17634061 GGCACGGTCCCCCCTGCGTGTTGCCGATCCTGCTGCCACAACCCTCGGTCT-AGTCCGATCTTAG
65 GACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGA-TTCGATCTTAG
17634125 ACTGGGAATGAACTCCATATGCTTA
129 ACTGGGAATGAACTCCATATGCTTA
17634150 GACTGGGGAT
Statistics
Matches: 236, Mismatches: 71, Indels: 10
0.74 0.22 0.03
Matches are distributed among these distances:
157 34 0.14
158 166 0.70
159 36 0.15
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
AACCCACGAAACGAGCGTGCAGCACTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCG
ACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGAC
TGGGAATGAACTCCATATGCTTAAGCC
Found at i:17634514 original size:26 final size:26
Alignment explanation
Indices: 17634476--17634528 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17634466 CTGGTTCGAT
17634476 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17634502 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
17634528 C
1 C
17634529 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17636116 original size:159 final size:158
Alignment explanation
Indices: 17635722--17636561 Score: 551
Period size: 159 Copynumber: 5.3 Consensus size: 158
17635712 AACTCCGTAT
* * *
17635722 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ****
17635787 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATGGATTGGGTCCCCCCCTGAGTGCTGTGATCC
66 CCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATGGACCCAGTCCCCCCCTGAGTGCTGTGATCC
* *
17635852 TGCTGCAGTAACCCTCGATCCAGTCTGA
131 CGCTGCAGCAACCCTCGATCCAGTCTGA
* * * * *
17635880 TCTTAAAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
17635944 GTCGGCCGAAGAGGCATAATGCGCAGGTCGGTGATTGG-CCCAGTCCCCCTCTGTGTGCTGTCGG
65 GCCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGA-TGGACCCAGTCCCCCCCTGAGTGCTGT-GA
* * *
17636008 TCCCGCTGCCGCAACCCTC-AGTCTAG-CTGGG
128 TCCCGCTGCAGCAACCCTCGA-TCCAGTCT-GA
* * * * *
17636039 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17636104 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCC-GAT-CCCCCCTGCGTGCTATCGAT
66 CCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATGGACCCAG-TCCCCCCCTGAGTGCTGT-GAT
* * * * * * * * *
17636167 CCTGCTGCCGTAACCTTCGGTTCGGTTTCA
129 CCCGCTGCAGCAACCCTCGATCCAGTCTGA
* * * * ** * *
17636197 TCTTAGAC-TGGGAATGAACTTCGTATG-CTTAGACTGCCCACGAAATGAGCGTGCGGGAGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** * * * *
17636260 GCCGGCCAGACAGGCAGAATGAGTGAGCCGGGGATTGACCCGGTCCCTCCCT-ACGTGCTGTCGA
65 GCCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATGGACCCAGTCCCCCCCTGA-GTGCTGT-GA
*** * *
17636324 TCCTATTGTAGCAACCCTCTG-TCCGGTCTGA
128 TCCCGCTGCAGCAACCCTC-GATCCAGTCTGA
* * * * * * *
17636355 TCTTA-A-AGTGGGAATGAACTCCGCATGCGTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTG
1 GCTTAGACA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * ** * *
17636418 AGCTAGCCGGAGAGGCATAATGCGCAAG-CTGGGGATCGACCC-GATCCCCTTCTGCGTGCTGCC
64 AGCCAGTCGGAGAGGCAAAATGCGCAAGTC-GGGGATGGACCCAG-TCCCCCCCTGAGTGCTG-T
* * * * *
17636481 GGTCCCACTGCCA-CAACCCTCGAT-CTGACTGGG
126 GATCCCGCTG-CAGCAACCCTCGATCCAGTCT-GA
* *
17636514 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
17636562 GACGTGAGGG
Statistics
Matches: 520, Mismatches: 135, Indels: 53
0.73 0.19 0.07
Matches are distributed among these distances:
157 62 0.12
158 222 0.43
159 231 0.44
160 4 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATGGACCCAGTCCCCCCCTGAGTGCTGTGATCC
CGCTGCAGCAACCCTCGATCCAGTCTGA
Found at i:17636677 original size:475 final size:475
Alignment explanation
Indices: 17635734--17636725 Score: 1135
Period size: 475 Copynumber: 2.1 Consensus size: 475
17635724 TTAGACATGC
* * * * * * * * *
17635734 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCAGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGACAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACAG
** * * *** * *
17635799 GCAGAATGCA-CAAGTCGGGGATGGATTGGGTCCCCCCCTGAGTGCTGTGATCCTGCTGCAGTAA
66 GCAGAATG-AGTGAGCCGGGGATTGACCCGGTCCCCCCCTGAGTGCTGTGATCCTACTGCAGCAA
*
17635863 CCCTCGATCCAGTCTGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
130 CCCTCGATCCAGTCTGATCTTAAACTGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAACG
* * * * *
17635928 AGCGTGCGGGCGCTGAGTCGGCCGAAGAGGCATAATGCGCAGGTCGGTGATTGGCCCAGTCCCCC
195 AGCGTGCGGGCGCTGAGTCAGCCGAAGAGGCATAATGCGCAGCTCGGGGATCGACCCAGTCCCCC
* * * *
17635993 TCTGTGTGCTGTCGGTCCCGCTGCCGCAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAAC
260 TCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAAC
* * * *
17636058 ACCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAGCCAGTCGGAGAGGCAAAAT
325 ACCCTATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCACTCAGCCAGTCAGAGACGCAAAAT
* * * * * *
17636123 GCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGTAACCTTCGGT
390 GCGCAAGCCAGGAATAGACCCGATCCCCCCTGCGTGCTATCAATCCTACTGCCATAACCCTCGGT
*
17636188 TCGGTTTCATCTTAGACTGGG
455 TCGGTTACATCTTAGACTGGG
* * **
17636209 AATGAACTTCGTATG-CTTAGACTGCCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACAG
1 AATGAACTCCGTATGCCTAAGACAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACAG
* * *
17636273 GCAGAATGAGTGAGCCGGGGATTGACCCGGTCCCTCCCT-ACGTGCTGTCGATCCTATTGTAGCA
66 GCAGAATGAGTGAGCCGGGGATTGACCCGGTCCCCCCCTGA-GTGCTGT-GATCCTACTGCAGCA
* * *
17636337 ACCCTCTG-TCCGGTCTGATCTTAAAGTGGGAATGAACTCCGCATGCGTAAGTCAACCCACGAAA
129 ACCCTC-GATCCAGTCTGATCTTAAACTGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAA
* * *
17636401 TGAGCGTGCGGGCGTTGAG-CTAGCCGGAGAGGCATAATGCGCAAGCT-GGGGATCGACCC-GAT
193 CGAGCGTGCGGGCGCTGAGTC-AGCCGAAGAGGCATAATGCGC-AGCTCGGGGATCGACCCAG-T
*
17636463 CCCCTTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTC-GATCT-GACTGGGGCTTAGACATGG
255 CCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTCAG-TCTAG-CTGGGGCTTAGACATGG
* * ** **
17636526 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGAGGGTGCTCATTC-GATCAGAGA
318 AATGAACACCCTATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCACTCAGCCAG-TCAGAGA
* * * ** * * * * *
17636590 CGCAGAATGTGCAAGTCAGGAATTAG-TTCGGTCCCCTCTTCGTGCTGTCAATCCTATTGCCATA
382 CGCAAAATGCGCAAGCCAGGAA-TAGACCCGATCCCCCCTGCGTGCTATCAATCCTACTGCCATA
*
17636654 ACCCTCGG-TCTGGTTAGATCTTAGACTGGG
446 ACCCTCGGTTC-GGTTACATCTTAGACTGGG
* * *
17636684 AATGACCTCCTTATGCCTAAGTCAACCCACGAAATGAGCGTG
1 AATGAACTCCGTATGCCTAAGACAACCCACGAAATGAGCGTG
17636726 TGGGCACTCA
Statistics
Matches: 427, Mismatches: 77, Indels: 25
0.81 0.15 0.05
Matches are distributed among these distances:
473 2 0.00
474 80 0.19
475 317 0.74
476 28 0.07
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (475 bp):
AATGAACTCCGTATGCCTAAGACAACCCACGAAATGAGCGTGCGGGAGCTCAGCCGGCCAGACAG
GCAGAATGAGTGAGCCGGGGATTGACCCGGTCCCCCCCTGAGTGCTGTGATCCTACTGCAGCAAC
CCTCGATCCAGTCTGATCTTAAACTGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTGAGTCAGCCGAAGAGGCATAATGCGCAGCTCGGGGATCGACCCAGTCCCCCT
CTGCGTGCTGCCGGTCCCACTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACA
CCCTATGCCTAAGCCAACCCACGAAACGGACGTGAGGGCACTCAGCCAGTCAGAGACGCAAAATG
CGCAAGCCAGGAATAGACCCGATCCCCCCTGCGTGCTATCAATCCTACTGCCATAACCCTCGGTT
CGGTTACATCTTAGACTGGG
Found at i:17637368 original size:26 final size:26
Alignment explanation
Indices: 17637339--17637388 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17637329 CTGGTCCGAT
17637339 CTTAGACTGGAAATGAACTCCGTAAG
1 CTTAGACTGGAAATGAACTCCGTAAG
**
17637365 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
17637389 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTAAG
Found at i:17637894 original size:159 final size:158
Alignment explanation
Indices: 17637711--17638005 Score: 367
Period size: 159 Copynumber: 1.9 Consensus size: 158
17637701 TATTAGATTG
* * * * *
17637711 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGTCGA-CTGGA
1 GGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGTCGATC-GAA
* * * * ** * * *
17637775 AAGGTAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGTCA
65 AAGGCAGAATGCGCAAGCCAGGGATCGACCCAAT-CCCCTCTGCGTGCTCTTGATCCCGCTGCCA
17637840 CAACCCTCGGTCCGACTGGGGCTTAGACAC
129 CAACCCTCGGTCCGACTGGGGCTTAGACAC
** * * * *
17637870 GGAATGAACACCCTATGCCTAAGCCAACCCATGAAACGGGCTTGCAGGTGCTCAGTTGATCGAAA
1 GGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGTCGATCGAAA
* *
17637935 AGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGCGTGCTCTTGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGCGTGCTCTTGATCCCGCTGCCACA
17638000 ACCCTC
131 ACCCTC
17638006 AATCCAGTTC
Statistics
Matches: 113, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 33 0.29
159 79 0.70
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACACCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGTCGATCGAAA
AGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGCGTGCTCTTGATCCCGCTGCCACA
ACCCTCGGTCCGACTGGGGCTTAGACAC
Found at i:17638068 original size:26 final size:25
Alignment explanation
Indices: 17638019--17638070 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17638009 CCAGTTCAAT
**
17638019 CTTAGACTGGGAAGAACTTTGTATG
1 CTTAGACTGGGAAGAACTCCGTATG
*
17638044 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGAAGAACTCCGTATG
17638070 C
1 C
17638071 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAAGAACTCCGTATG
Found at i:17638613 original size:159 final size:156
Alignment explanation
Indices: 17638240--17638619 Score: 379
Period size: 156 Copynumber: 2.4 Consensus size: 156
17638230 AACTCCGTAT
* * * * **
17638240 GCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCATGGAACGAGCGTGCGAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
17638305 CCGACCGGAGAGGTAGAATGCATAAGTCGAGGATCGGCCCGGTCCCCCCTGTGTTATCGATCTTG
66 CCGACCGGAGAGGAAGAATGCATAAGCCGAGGATCGGCCCGATCCCCCCTGTGCTACCAATCTCG
**
17638370 CTACCGTAACCCTCAGTCTGATCCGA
131 CTACCACAACCCTCAGTCTGATCCGA
* * ** * * * *
17638396 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAATCAACCCACGAAATGAGCTTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
17638460 GCCGATCGGAGAGGAATAATGCATGAGCCGAGGATCGGCTCGATCCCTCTCTAAGTGCTACCAAT
65 GCCGACCGGAGAGGAAGAATGCATAAGCCGAGGATCGGCCCGATCCC-CCCT--GTGCTACCAAT
* * *
17638525 CTCGCTACCACAACCCTCGATTC-GA-CTGGG
127 CTCGCTACCACAACCCTC-AGTCTGATC-CGA
* * *
17638555 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
17638620 TCGGTCGAAG
Statistics
Matches: 175, Mismatches: 42, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
155 1 0.01
156 88 0.50
157 3 0.02
158 1 0.01
159 78 0.45
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGAAGAATGCATAAGCCGAGGATCGGCCCGATCCCCCCTGTGCTACCAATCTCG
CTACCACAACCCTCAGTCTGATCCGA
Found at i:17638639 original size:13 final size:13
Alignment explanation
Indices: 17638621--17638646 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17638611 GGCACTCAGT
17638621 CGGTCGAAGAGGC
1 CGGTCGAAGAGGC
17638634 CGGTCGAAGAGGC
1 CGGTCGAAGAGGC
17638647 AAAATATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGGTCGAAGAGGC
Found at i:17638768 original size:26 final size:26
Alignment explanation
Indices: 17638739--17638791 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17638729 CTGGTCCAAT
17638739 CTTAGAC-TGGGAACGAACTCCATATG
1 CTTAGACAT-GGAACGAACTCCATATG
* *
17638765 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCATATG
17638791 C
1 C
17638792 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCATATG
Found at i:17639605 original size:158 final size:158
Alignment explanation
Indices: 17639317--17639806 Score: 392
Period size: 158 Copynumber: 3.1 Consensus size: 158
17639307 TTAGACATCA
* ** * *
17639317 AATGAACTCCGTATGCCTAAGCCAACACACAAAATGAGCGTGCGGGTGCTCAACCGATCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACACACAAAATGAGCGTGCAGGCACTCAACCGACCAGAGAG
* * * * * *
17639382 GCAAAATACGCAAGTCGAGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCTACTGCCGCAAC
66 GCAAAATACGCAAGTCGAGGATCGACCCAATCCCCCCTACGTGCTGTCAATCCCACTACCACAAC
17639447 CCTCGGTCTGGTCTAATCTTAGACTGGG
131 CCTCGGTCTGGTCTAATCTTAGACTGGG
* * * * * *
17639475 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAACTG-CCAGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACACACAAAATGAGCGTGCAGGCACTCAACCGACCAGAGAG
* * * *
17639539 GCATAATACGTAAGTCGAGGATCGACCCAATCCCCCTCTACGTGCTGTCAGTCCCGCTACCACAA
66 GCAAAATACGCAAGTCGAGGATCGACCCAATCCCCC-CTACGTGCTGTCAATCCCACTACCACAA
* ** *** *
17639604 CCCTCAGTCCAGT-TGGGGCTTAGACAT-GA
130 CCCTCGGTCTGGTCT-AATCTTAGAC-TGGG
* * * * * * * ** * *
17639633 AATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGACCAGATAA
1 AATGAACTCCGTATGCCTAAGCCAACACACAAAATGAGCGTGCAGGCACTCAACCGACCAGAGAG
* * * * * * * * ** * ** *
17639698 GCAGAATACGAAAGCCGAGGATTGGCCCGATCCCTCCTGCGTGCTACCGATCCTGCTACCGCAAC
66 GCAAAATACGCAAGTCGAGGATCGACCCAATCCCCCCTACGTGCTGTCAATCCCACTACCACAAC
* * * ** *
17639763 CCTCGATCCGATCCGATTTTAGACTGGG
131 CCTCGGTCTGGTCTAATCTTAGACTGGG
*
17639791 AATGAACTCCATATGC
1 AATGAACTCCGTATGC
17639807 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 65, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 39 0.15
158 186 0.71
159 36 0.14
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACACACAAAATGAGCGTGCAGGCACTCAACCGACCAGAGAG
GCAAAATACGCAAGTCGAGGATCGACCCAATCCCCCCTACGTGCTGTCAATCCCACTACCACAAC
CCTCGGTCTGGTCTAATCTTAGACTGGG
Found at i:17639821 original size:26 final size:26
Alignment explanation
Indices: 17639781--17639832 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17639771 CGATCCGATT
17639781 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
17639807 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
17639833 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:17640350 original size:25 final size:26
Alignment explanation
Indices: 17640304--17640355 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17640294 CTGGTCTGAT
*
17640304 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17640330 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17640355 C
1 C
17640356 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17640527 original size:183 final size:183
Alignment explanation
Indices: 17640146--17640588 Score: 606
Period size: 183 Copynumber: 2.4 Consensus size: 183
17640136 TCGGTCCAAT
* * ** * * *
17640146 CTTAGACAGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGGGCGTGCAGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
17640211 CGACCGGAGAGGTAGAATATGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCT
66 CGACCGGAGAGGTAGAATAT-CAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCTGCCAATCCT
* *
17640276 ACTGCCGTAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
130 ACTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
*
17640330 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
17640394 C-AGCCGTAGAGGTAGAATGCAT-AAGCCGGGGACCGACCCGGT-CCCCCTACGTGCTGTCGATC
66 CGA-CCGGAGAGGTAGAAT--ATCAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCTGCCAATC
17640456 CTACTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
128 CTACTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * * **
17640512 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTGAACCCATGAAACGAGCGTACAAGCGCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
*
17640577 CGACTGGAGAGG
66 CGACCGGAGAGG
17640589 CTGACTGGAG
Statistics
Matches: 228, Mismatches: 26, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
182 80 0.35
183 138 0.61
184 8 0.04
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (183 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGACCGGAGAGGTAGAATATCAAGCCGGGGACCGACCCGGTCCCCCCTACGTGCTGCCAATCCTA
CTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
Found at i:17640596 original size:13 final size:13
Alignment explanation
Indices: 17640578--17640602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17640568 GCGCTCAATC
17640578 GACTGGAGAGGCT
1 GACTGGAGAGGCT
17640591 GACTGGAGAGGC
1 GACTGGAGAGGC
17640603 ATAATGTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
GACTGGAGAGGCT
Found at i:17640905 original size:26 final size:26
Alignment explanation
Indices: 17640867--17640919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17640857 CCGGTCTGAT
*
17640867 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
17640893 CTTAGAC-ATGGAATAAACTTCGTATG
1 CTTAGACTA-GGAATAAACTTCGTATG
17640919 C
1 C
17640920 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:17641409 original size:26 final size:26
Alignment explanation
Indices: 17641368--17641420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17641358 CCAGTTTGAT
*
17641368 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17641394 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17641420 C
1 C
17641421 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17641516 original size:882 final size:880
Alignment explanation
Indices: 17640330--17642168 Score: 2295
Period size: 882 Copynumber: 2.1 Consensus size: 880
17640320 ACTCCGTATG
* * *
17640330 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17640394 CAGCCGTAGAGGTAGAATGCATAAGCCGGGGACCGACCCGGTCCCCCTACGTGCTGTCGATCCTA
66 CAGCCGGAGAGGTAGAATGCATAAGCCGGGGACCGACCCAGTCCCCCTACGTGCTGTCGATCCTA
* * ** *
17640459 CTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
131 CTACCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGG
* * ** * *
17640524 ATGAACTTCGTATGCCTAAGTGAACCCATGAAACGAGCGTACAAGCGCTCAATCGACTGGAGAGG
196 ATGAACTCCATATGCCTAAGTGAACCCACAAAACGAGCATACAAGCACTCAATCGACTGGAGAGG
** * * *
17640589 CTGACTGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGTTGTCGACC
261 CTGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAACC
*
17640654 CCGCTGAA-GGTCTTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAACT-TC
326 CCGCT-AATGGTCTTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACAAGGAATGAACTCT-
* * * *
17640717 GTATGCCCAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCA
389 GTATGCCCAAGCCAACCCACGAAACAAGCATGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCA
* * **
17640782 CAAGCCGGGGATCAGTCCGA-TC-CCTCTTTACGTGCTGCC-ATTCCTGCTACTGGTCCTGCTAT
454 CAAGCCGGGGATC-GACCCAGTCACC-CCCTACGTGCTGCCGA-TCCTGCTACTGGTCCTGCTAT
* * * *
17640844 CGCAACCCTTAGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATAA
516 CGCAACCCTCACTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATAA
* * *
17640909 ACTTCGTATGCCTAACCCAACCCACGAAATGAGTGTGCGGGCGCTTAGCCGACCGGAGAGGCAAA
581 ACTCCGTATGCCTAACCCAACCCACGAAACGAGTGTGCGGGAGCTTAGCCGACCGGAGAGGCAAA
* * *
17640974 ATACGTAAGCCGAGGATC-GACTCAGTCCCCCCTGCATACTACCAATCCTGCT-GCTGTAACCCT
646 ATACGTAAGCCGAGGATCAG-CTCAGT-CCCCCTGCATACTACCAATCCTACTATC-GCAACCCT
* * *
17641037 CAATCC-GATCTAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
708 CAATCCAG-TCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
17641101 GTGTGGGCGCTGACCCGGTCGAAGAGGCATAATACGCAAGCTGGGGATCGG-CTAGGT-CCCCTT
772 GTGCGGGCGCTGAACCGATCAAAAAGGCATAATACACAAGCTGGGGATCGGCCCA-GTCCCCCTT
** *
17641164 CTGTGTGCTATAGGTCCTACTGCCACAACCCTCGGTCTGACTAGGC
836 -TGCATGCTATAGGTCCCACTGCCACAACCCTCGGTCTGACTAGGC
* * *
17641210 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17641275 CGGTCGGAGAGGTAGAATGC-TAAAGCCGGGGATCGGCTCAGTCCCCCCTGCGTGCTGTTGATCC
66 CAGCCGGAGAGGTAGAATGCAT-AAGCCGGGGACCGACCCAGT-CCCCCTACGTGCTGTCGATCC
* * *
17641339 TGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
129 TACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
* * * *
17641404 GGATGAACTCCATATGCCTAAGTCG-ACCCACAAAACGAGCATGC-GGACACTCAGTCGGCTGGA
194 GGATGAACTCCATATGCCTAAGT-GAACCCACAAAACGAGCATACAAG-CACTCAATCGACTGGA
* * * *
17641467 GAGGCTGA-TCGGAGAGGCATAATACGCAAGCTGAGGATTAGCTCGATCCCCTTCTGCGTGCTGC
257 GAGGCTGACT-GGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGC
* * * *
17641531 CAATCTCGCTAATGGTCTTGCTGCCACAACTCTCAGTCCGACTGGGGCTTAGACAAGGAATGAAC
321 CAACCCCGCTAATGGTCTTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACAAGGAATGAAC
* * * * *
17641596 TCTGTATGCCTAAGCCAACCCACGAAACAAGCATGTGAGCGCTGAGCCGGTCGGAGAGGCATAAT
386 TCTGTATGCCCAAGCCAACCCACGAAACAAGCATGCGAGCGCTCAGCCGGCCGGAGAGGCAGAAT
* * *
17641661 GCACAAGTCGGGGATCGACCCAGTCACCCCCTACGTGCTGCCGATCCTGTTGCTGGTCCTGCTAT
451 GCACAAGCCGGGGATCGACCCAGTCACCCCCTACGTGCTGCCGATCCTGCTACTGGTCCTGCTAT
* * * * *
17641726 TGTAACCCTCACTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATCA
516 CGCAACCCTCACTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATAA
* * * * * *
17641791 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTTATCCGATCGGAGAGGTAGA
581 ACTCCGTATGCCTAACCCAACCCACGAAACGAGTGTGCGGGAGCTTAGCCGACCGGAGAGGCAAA
* * * ** * ** **
17641856 ATGCGTAAGCCGGGGATCAGTTTGGTCCCCCTGCATGCTGTCAATCCTACTATCGCAACCCTGGA
646 ATACGTAAGCCGAGGATCAGCTCAGTCCCCCTGCATACTACCAATCCTACTATCGCAACCCTCAA
* * * * *
17641921 TGCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGC
711 TCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
17641986 GGGCGCTGAACCGATCAAAAAGGCATAATGCACAAGTTGGGGATCGGCCCAGTCCCCCTTTGCAT
776 GGGCGCTGAACCGATCAAAAAGGCATAATACACAAGCTGGGGATCGGCCCAGTCCCCCTTTGCAT
* *
17642051 GCTATAGGTCCCACTGCCACAACCCTCGGTCTGACTGGGG
841 GCTATAGGTCCCACTGCCACAACCCTCGGTCTGACTAGGC
* * ** * * * * *
17642091 CTTAGACATGCAATGAACTCCCTACGCCTAAGCCAACCCTTGGAATGAGCGTACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
17642156 CAACCGGAGAGGT
66 CAGCCGGAGAGGT
17642169 CAGCTGAAGA
Statistics
Matches: 814, Mismatches: 129, Indels: 31
0.84 0.13 0.03
Matches are distributed among these distances:
880 8 0.01
881 322 0.40
882 478 0.59
883 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (880 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGGAGAGGTAGAATGCATAAGCCGGGGACCGACCCAGTCCCCCTACGTGCTGTCGATCCTA
CTACCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGG
ATGAACTCCATATGCCTAAGTGAACCCACAAAACGAGCATACAAGCACTCAATCGACTGGAGAGG
CTGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAACC
CCGCTAATGGTCTTGCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACAAGGAATGAACTCTGT
ATGCCCAAGCCAACCCACGAAACAAGCATGCGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCACA
AGCCGGGGATCGACCCAGTCACCCCCTACGTGCTGCCGATCCTGCTACTGGTCCTGCTATCGCAA
CCCTCACTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCC
GTATGCCTAACCCAACCCACGAAACGAGTGTGCGGGAGCTTAGCCGACCGGAGAGGCAAAATACG
TAAGCCGAGGATCAGCTCAGTCCCCCTGCATACTACCAATCCTACTATCGCAACCCTCAATCCAG
TCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTGAACCGATCAAAAAGGCATAATACACAAGCTGGGGATCGGCCCAGTCCCCCTTTGCATGCTAT
AGGTCCCACTGCCACAACCCTCGGTCTGACTAGGC
Found at i:17642305 original size:26 final size:26
Alignment explanation
Indices: 17642275--17642327 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17642265 TCGGTCCGAT
*
17642275 CTTAGAC-TGAGAATGAACTCGGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
17642301 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17642327 C
1 C
17642328 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17642773 original size:26 final size:26
Alignment explanation
Indices: 17642744--17642796 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17642734 CCGATCCGAT
*
17642744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
17642770 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17642796 C
1 C
17642797 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17643162 original size:170 final size:170
Alignment explanation
Indices: 17642954--17643320 Score: 408
Period size: 170 Copynumber: 2.2 Consensus size: 170
17642944 TCGGCTGGGG
* *
17642954 CTTAGACATGGAATGAACTCTGTAT-CACTAAACCAACCCACGAAACGAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGGAATGAACTCTGTATGCACTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
17643018 CCGGCCGAAAAGGCCAAATATG-G-AAG-TCGGGGATTGGCCCGATCCGC-CCTGCGTGCTA-CC
65 CCAGCCGAAAAGG-CAAA-ATGCGTAAGCT-GGGGATTGACCCGATCC-CTCCTGCATGCTATCC
*
17643078 AACCT-TACTGCTGGTCCAGCTATCGTAACCCTCGGTCTGGTCTGAT
126 AACCTCT--TGCTGGTCCAGCTATCGTAACCCTCGATCTGGTCTGAT
* * * * *
17643124 CTTAGACTGGGAATGAACTCTGTATGC-CTAAGCCAACCCATGAAACTAGCGTGTGGGCACTCAG
1 CTTAGACT-GGAATGAACTCTGTATGCACTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * *
17643188 CCAGCCGGAGAGGTAGAATGCGTAAGCTGGGGATTGACTCGATCCCTCCTGCATGCTATCGATCC
65 CCAGCCGAAAAGGCAAAATGCGTAAGCTGGGGATTGACCCGATCCCTCCTGCATGCTATCCAACC
* *
17643253 TCTTGCTGGTCCTGCTATCGTAACCCTCGATTTGGTCTGAT
130 TCTTGCTGGTCCAGCTATCGTAACCCTCGATCTGGTCTGAT
*
17643294 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCTGTATGC
17643321 TTAGACATGG
Statistics
Matches: 167, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
168 3 0.02
169 5 0.03
170 151 0.90
171 7 0.04
172 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (170 bp):
CTTAGACTGGAATGAACTCTGTATGCACTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CAGCCGAAAAGGCAAAATGCGTAAGCTGGGGATTGACCCGATCCCTCCTGCATGCTATCCAACCT
CTTGCTGGTCCAGCTATCGTAACCCTCGATCTGGTCTGAT
Found at i:17643332 original size:26 final size:26
Alignment explanation
Indices: 17643294--17643346 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17643284 TTGGTCTGAT
17643294 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17643320 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17643346 C
1 C
17643347 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17644560 original size:695 final size:697
Alignment explanation
Indices: 17643290--17644563 Score: 1659
Period size: 696 Copynumber: 1.8 Consensus size: 697
17643280 CGATTTGGTC
* *
17643290 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
* * * *
17643355 ACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGTCAGAGAGGCAGAATGTGCAAGCCGAAAACTG
66 ACCCACGAAACGAGCGTACGAGCGCTCAGTAGGTCAAAGAGGCAGAATGTGCAAGCCGAAAACTG
* * ** * *
17643420 ACCCGATCCCCCCTGTGTGCTGTCAATTTTACTATCGCAACCCTCGGTTCGGTTTGATCTTAGAC
131 ACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAGAC
* * ** * *
17643485 TGGGAATGAAGTCCGTATGCCTACGTCAACCCACAAAATGAGCATTCGGGCGCTGAGCCAGTCGG
196 TGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAGTCGA
* * * *
17643550 AGAGGCATAATGCAGAAGTCGAGGAACGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCACTGCC
261 AGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACTGCA
17643615 ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
326 ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * *
17643680 AACGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCCCAATATGAGGATCGGCCCGATC
391 AACGGGCGTGTGGACACTCAGCCGACCGGAGAGGCAAAATGCACAATATGAGGATCGACCCGATC
* * * * * *
17643745 CCCTTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGA
456 CCCTTACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGATCCGATCTTAGACTGGAAATGA
* *
17643810 ACTTCGTATGCTTTGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
521 ACTTCATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
17643875 GGTGCTCAGTCTGTCGGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
586 GGTGCTCAGTCTGTCGGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
17643940 CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
651 CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
* * *
17643987 TGATCTTAGACTGGGAATGAACTCTGTATACTTAGACATGAAATTAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
* *** * * ***
17644052 ACCCACGAAATGTTTGTAC-AGACGCTCAGTAGG-CTAAAGAGGGAGAATG-GTAAGCCGGGGAC
66 ACCCACGAAACGAGCGTACGAG-CGCTCAGTAGGTC-AAAGAGGCAGAATGTGCAAGCCGAAAAC
** * * * *
17644114 TGACTTGATCCCCCCTGTGTGCTGTCGATCTTGCTGTAGCAACCCTCAATTCGATCTGTTCTTAG
129 TGACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAG
** * ** * *
17644179 ACTGGGAATGAAATTTGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGGCGCTGGGCC-GAT
194 ACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAG-T
* * * *
17644243 CGAAGAGGCATAATTCAGAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCAGTCCCACT
258 CGAAGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACT
* * * * * * *
17644308 GCAACAAGCCTTGGTCCGGC-GGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
323 GCAACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
17644372 TGAAATGGGTGTGTGGACATTCAGTCCG-TCGGAGAGGCAAAATGCATAA-ATCG-GGATCGACC
388 CGAAACGGGCGTGTGGACACTCAG-CCGACCGGAGAGGCAAAATGCACAATAT-GAGGATCGACC
* * *
17644434 CGATCCCTTCTACGTGCTACCGATCCTGCTGTTGCAACCATCAGTCT-AGTCCGATCTTAGATTG
451 CGATCCCCT-TACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGA-TCCGATCTTAGACTG
** *
17644498 GAAATGAAC-TCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
514 GAAATGAACTTC-ATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
17644562 AG
578 AG
17644564 TGTGCGGACG
Statistics
Matches: 486, Mismatches: 83, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
694 21 0.04
695 180 0.37
696 190 0.39
697 95 0.20
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (697 bp):
TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTACGAGCGCTCAGTAGGTCAAAGAGGCAGAATGTGCAAGCCGAAAACTG
ACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAGAC
TGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAGTCGA
AGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACTGCA
ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGTGTGGACACTCAGCCGACCGGAGAGGCAAAATGCACAATATGAGGATCGACCCGATC
CCCTTACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGATCCGATCTTAGACTGGAAATGA
ACTTCATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
GGTGCTCAGTCTGTCGGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
Done.