Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 124 of 138
Found at i:17644592 original size:695 final size:697
Alignment explanation
Indices: 17643290--17644593 Score: 1631
Period size: 695 Copynumber: 1.9 Consensus size: 697
17643280 CGATTTGGTC
* *
17643290 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
* * * *
17643355 ACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGTCAGAGAGGCAGAATGTGCAAGCCGAAAACTG
66 ACCCACGAAACGAGCGTACGAGCGCTCAGTAGGTCAAAGAGGCAGAATGTGCAAGCCGAAAACTG
* * ** * *
17643420 ACCCGATCCCCCCTGTGTGCTGTCAATTTTACTATCGCAACCCTCGGTTCGGTTTGATCTTAGAC
131 ACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAGAC
* * ** * *
17643485 TGGGAATGAAGTCCGTATGCCTACGTCAACCCACAAAATGAGCATTCGGGCGCTGAGCCAGTCGG
196 TGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAGTCGA
* * * *
17643550 AGAGGCATAATGCAGAAGTCGAGGAACGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCACTGCC
261 AGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACTGCA
17643615 ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
326 ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * *
17643680 AACGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCCCAATATGAGGATCGGCCCGATC
391 AACGGGCGTGTGGACACTCAGCCGACCGGAGAGGCAAAATGCACAATATGAGGATCGACCCGATC
* * * * * *
17643745 CCCTTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGA
456 CCCTTACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGATCCGATCTTAGACTGGAAATGA
* *
17643810 ACTTCGTATGCTTTGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
521 ACTTCATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
** * * *
17643875 GGTGCTCAGTCTGTCGGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
586 GACGCTCAGCCTGCCAGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
17643940 CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
651 CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
* * *
17643987 TGATCTTAGACTGGGAATGAACTCTGTATACTTAGACATGAAATTAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
* *** * * ***
17644052 ACCCACGAAATGTTTGTAC-AGACGCTCAGTAGG-CTAAAGAGGGAGAATG-GTAAGCCGGGGAC
66 ACCCACGAAACGAGCGTACGAG-CGCTCAGTAGGTC-AAAGAGGCAGAATGTGCAAGCCGAAAAC
** * * * *
17644114 TGACTTGATCCCCCCTGTGTGCTGTCGATCTTGCTGTAGCAACCCTCAATTCGATCTGTTCTTAG
129 TGACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAG
** * ** * *
17644179 ACTGGGAATGAAATTTGTATGCCTAAGTTAACCCATGAAACAAGCGTGCGGGCGCTGGGCC-GAT
194 ACTGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAG-T
* * * *
17644243 CGAAGAGGCATAATTCAGAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCAGTCCCACT
258 CGAAGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACT
* * * * * * *
17644308 GCAACAAGCCTTGGTCCGGC-GGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
323 GCAACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
17644372 TGAAATGGGTGTGTGGACATTCAGTCCG-TCGGAGAGGCAAAATGCATAA-ATCG-GGATCGACC
388 CGAAACGGGCGTGTGGACACTCAG-CCGACCGGAGAGGCAAAATGCACAATAT-GAGGATCGACC
* * *
17644434 CGATCCCTTCTACGTGCTACCGATCCTGCTGTTGCAACCATCAGTCT-AGTCCGATCTTAGATTG
451 CGATCCCCT-TACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGA-TCCGATCTTAGACTG
** *
17644498 GAAATGAAC-TCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
514 GAAATGAACTTC-ATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * *
17644562 AGTGTGCGGACGTTCA-CCTGACCAGAGAGGCA
578 AGCGTACGGACGCTCAGCCTG-CCAGAGAGGCA
17644594 GGATAAGCAA
Statistics
Matches: 507, Mismatches: 91, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
694 24 0.05
695 198 0.39
696 190 0.37
697 95 0.19
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (697 bp):
TGATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTACGAGCGCTCAGTAGGTCAAAGAGGCAGAATGTGCAAGCCGAAAACTG
ACCCGATCCCCCCTGTGTGCTGTCAATCTTACTATAGCAACCCTCAATTCGATCTGATCTTAGAC
TGGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCGCTGAGCCAGTCGA
AGAGGCATAATGCAGAAGCCGAGGAACAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCACTGCA
ACAACCCTCGATCCGACTGGAGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGTGTGGACACTCAGCCGACCGGAGAGGCAAAATGCACAATATGAGGATCGACCCGATC
CCCTTACGTGCTACCGATCCTGCTGTCGCAACCATCAGTCTGATCCGATCTTAGACTGGAAATGA
ACTTCATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
GACGCTCAGCCTGCCAGAGAGGCAAAATACGTAAGCTAGGAATTAGCCCGGTCCACCCCTGTGTA
CTGCTGATCCTGTTGCTAGTCCTACTGTCGCGACCCTCAGTCTAGTT
Found at i:17645387 original size:26 final size:26
Alignment explanation
Indices: 17645351--17645403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17645341 CTGATCTGAT
17645351 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17645377 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17645403 C
1 C
17645404 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17646121 original size:26 final size:26
Alignment explanation
Indices: 17646083--17646132 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17646073 GGCACAAACT
17646083 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17646109 CTTAGAC-ATGGAATGAACTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
17646133 CGCCTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17646652 original size:26 final size:26
Alignment explanation
Indices: 17646623--17646675 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17646613 CCGATCCTAT
17646623 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17646649 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17646675 C
1 C
17646676 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17646733 original size:197 final size:195
Alignment explanation
Indices: 17646424--17646781 Score: 511
Period size: 197 Copynumber: 1.8 Consensus size: 195
17646414 ATTTGATCTG
* * * *
17646424 ATCTTACACTGGTAATGAACTCCGTATGCTTAGAATGGGGAAGAACTTCGTATGCCTAAGTCAGC
1 ATCTTACACTGGGAATGAACTCCGTATGCTTAGAAT-GGGAAGAACTCCGTATGCCTAAGCCAAC
* * ** * ** *
17646489 CCACGAAACGAGCATGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCACAAGTCGGGGATTGGT
65 CAACGAAACGAGCATGCAGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGA
*
17646554 TCGATCCCCTCTTACGTGCTGTCGATCCTGCTATTGGTCCTACTACCGCAACCCTCAGTCCGATC
130 TCGATCCCCCCTT-CGTGCTGTCGATCCTGCTATTGGTCCTACTACCGCAACCCTCAGTCCGATC
17646619 CT
194 CT
*
17646621 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTACACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAA-GAACTCCGTATGCCTAAGCCAA
* * *
17646685 CCAACGAAACGAGCGTGCAGGCACTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGG
64 CCAACGAAACGAGCATGCAGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGG
*
17646750 ATCGGTCCCCCCTTCGTGCTGTCGATCCTGCT
129 ATCGATCCCCCCTTCGTGCTGTCGATCCTGCT
17646782 GCTGGAACCC
Statistics
Matches: 141, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
196 22 0.16
197 117 0.83
198 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (195 bp):
ATCTTACACTGGGAATGAACTCCGTATGCTTAGAATGGGAAGAACTCCGTATGCCTAAGCCAACC
AACGAAACGAGCATGCAGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGAT
CGATCCCCCCTTCGTGCTGTCGATCCTGCTATTGGTCCTACTACCGCAACCCTCAGTCCGATCCT
Found at i:17647064 original size:159 final size:158
Alignment explanation
Indices: 17646648--17647093 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 158
17646638 AACTCCGTAT
* * * * *
17646648 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
17646713 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCGG-ATCGGTCCCCCCTTCGTGCTGTCGATC
66 CCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCT-GGTCCCCCCTTCGTGCTGTCGATC
* **
17646777 CTGCTGCTGGAACCCTCGATCTGGTCTGA
130 CCGCTGCCAGAACCCTCGATCTGGTCTGA
* * * * * ** *
17646806 TCTTAGAC-TGGGAATGCACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGTGCTGA
1 GCTTAGACAT-GGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * * * * *
17646870 GCCGGCCAGAAATGCATAATGCGT-AGGTCGAGGATCGGCCTGGTCCCCCTCTGT-GTGTTGTTG
65 GCCGGCCGGAGAGGTAGAATGCGTAAGCT-GGGGATCGGCCTGGTCCCCC-CT-TCGTGCTGTCG
* *
17646933 ATCCCGCTGCCATAACCCTCGATCTGG-CTGGG
127 ATCCCGCTGCCAGAACCCTCGATCTGGTCT-GA
* * *
17646965 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
** * * *
17647030 CCGGTTGGAGAGGTAGAATGCATAAGCTGGGGATCGGCTCT-GTCCCCCCTGCGTGCTATCGATC
66 CCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGC-CTGGTCCCCCCTTCGTGCTGTCGATC
17647094 TTGCTACCGT
Statistics
Matches: 223, Mismatches: 55, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 95 0.43
159 118 0.53
160 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTTCGTGCTGTCGATCC
CGCTGCCAGAACCCTCGATCTGGTCTGA
Found at i:17647160 original size:26 final size:26
Alignment explanation
Indices: 17647124--17647176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17647114 CTGATCCGAT
*
17647124 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
*
17647150 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
17647176 C
1 C
17647177 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:17647533 original size:26 final size:26
Alignment explanation
Indices: 17647504--17647556 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17647494 CCGGTCTGAT
17647504 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
17647530 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
17647556 C
1 C
17647557 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:17647728 original size:26 final size:26
Alignment explanation
Indices: 17647699--17647751 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17647689 CCGATCCGAT
17647699 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17647725 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17647751 C
1 C
17647752 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17647847 original size:195 final size:194
Alignment explanation
Indices: 17647333--17647836 Score: 596
Period size: 195 Copynumber: 2.6 Consensus size: 194
17647323 TCCGGCTGGG
* * * *
17647333 GCTTAGACATGGAATGGACTCCGTAT-CACTAAACCAACCCACGAAACGAGTGTACGGGTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGC-CTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * *
17647397 ACCGGTCGAAAAGGTAGAATACGAAAGTCAGGGATCGGCCCGATCCACCCTGCATGCTACCAACC
65 GCCAGTCGAAGAGGTAGAATGCGAAAG-CAGGGATCGGCTCGATCC-CCCTGCATGCTATCAACC
* * * * * * *
17647462 CTACTGCTGGTCCTGTTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGT
128 CTACTACTGGTCCTGCTACCACAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGT
17647527 AT
193 AT
* * ** *
17647529 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTAGCGTGTGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * *
17647594 CCAGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCTGCATGCTATCGATCCT
66 CCAGTCGAAGAGGTAGAATGCGAAAGC-AGGGATCGGCTCGATCCCCCTGCATGCTATCAACCCT
* * *
17647659 CCTACTGGTCCTGCTATCTCAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 ACTACTGGTCCTGCTACCACAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
*
17647724 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * * *
17647789 TCAGTCGAAGACGCAGAATGCGTAAGCCGGAACCGGCTCGGTCCCCCT
66 CCAGTCGAAGAGGTAGAATGCGAAAGCAGGGATCGGCTCGATCCCCCT
17647837 TACGTGCTAT
Statistics
Matches: 257, Mismatches: 49, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
194 16 0.06
195 153 0.60
196 87 0.34
197 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCAGTCGAAGAGGTAGAATGCGAAAGCAGGGATCGGCTCGATCCCCCTGCATGCTATCAACCCTA
CTACTGGTCCTGCTACCACAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:17648743 original size:697 final size:691
Alignment explanation
Indices: 17647483--17648983 Score: 1591
Period size: 697 Copynumber: 2.2 Consensus size: 691
17647473 CCTGTTACCA
* * * *
17647483 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATG-GAATGAA
1 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGAGGATGAA
* ** * *
17647547 CTCTGTATGCCTAAGCCAACCCACGAAACT-AGCGTGTGGGCATTCAGCCAGCCGGAGAGGTAGA
65 CTCTGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGTCAGCCAGAGAGGTAGA
* * * * * * *
17647611 ATGCGCAAGCTGGGGATCGACTCGATCCCCCTGCATGCTATCGATCCTCCTACTGGTCCTGCTAT
129 ATGCGCAAGCCGAGAATAGACCCGATCCCCCTGCATGCTATCGATCCTCCTACTAGTCCTGCTAC
* * * *
17647676 CTCAACCCTCAGCCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
194 CGCAACCCTCAGCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAA
*
17647741 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCAGTCGAAGACGCAGA
259 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGTCAGTCGAAGACGCAGA
* * * *
17647806 ATGCGTAAGCCGGAACCGGCTCGGTCCCCCTTACGTGCTATCAATTTTACTATCACAACCTCGTT
324 ATGCGCAAGCCGGAACCGCCTCGATCCCCCTTA-GTGCTATCAATCTTACTATCACAACCTCGTT
* * * * *
17647871 CTATCTGATCTTAGACTGGGAATGGAGTTCGTATGCCTAAGTCAACCCACAAAATGAGCATTCGG
388 CGATCTGATCTTAGACTAGGAATGAAATTCGTATGCCTAAGTCAACCCACAAAATGAGCATACGG
* ** * * * *
17647936 GCGTTCAGCCAGTCGGAGAGGCATAATGGCAACTCAGGGAATGGCCCGGTCCCCCTCCGCGTGCT
453 GCGTTCAGCCAGTCGAAGAGGCATAATGGCAAAGCAGGGAATAGCCCGATCCCCCTCCACATGCT
* *** *
17648001 ACTGGTCCCGCTGCCACAACCCTCAGTCTGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCC
518 ACTGGTCCCGCTGCCACAACCCTCAGTCCGACGGGGGCTTAGACATAGAATGAACTACCTATGCC
* *
17648066 TAAGCCAACCCATGAAACGGGCGTGCAGG-CGCTCA-ACCGACCGGAGAGGCAGAATGCCCAAGA
583 TAAGCCAACCCATGAAACGGGCGTGC-GGACGCTCAGACCG-CCGGAGAGGCAAAATGCACAA-A
* * * * * * * *
17648129 -TGAGGATCGGCCTAATCCCCCCTGCGTGCTGCTGATCCTGCTGTCG
645 CCGAGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTATCG
*
17648175 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTTGACTGAGGATGAA
1 CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGAGGATGAA
* *
17648239 CTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCTGTCAGAGAGGTAGAA
65 CTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGCCAGAGAGGTAGAA
* * * * * *
17648304 TGCGTAAGCCGAGAATTAG-CCCGGTCCACCCCTGTATGCT-GCTGATCCTGCTGCTAGTCCTGC
130 TGCGCAAGCCGAGAA-TAGACCCGAT-C-CCCCTGCATGCTATC-GATCCTCCTACTAGTCCTGC
* * * *
17648367 TGCCGCAACCCTCAGTCTAG-TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGAA
191 TACCGCAACCCTCAG-CCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAA
* * **
17648431 ATAAACTCCGTATGCCTAAGCCAACCCATGAAATGTTCGTACAGGCGCTCAGT-AGGTC-AGAGA
255 ATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGTCA-GTCGA-AGA
* * * * * * * * *
17648494 GGGAGAATGGGCAAGCTGAGGACTGACCT-GATCCCTCCTGT-GTGCTGTCAATCTTGCTGT-AG
318 CGCAGAATGCGCAAGCCG-GAACCG-CCTCGATCCC-CCT-TAGTGCTATCAATCTTACTATCA-
* *
17648556 CAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAAATTCGTATGCCTAAGTCAACCCACGAA
378 CAA-CCTC-GTTCGATCTGATCTTAGACTAGGAATGAAATTCGTATGCCTAAGTCAACCCACAAA
* * * * * * * *
17648621 ATGAGCGTACGGGCGTTGAGTC-GATCGAAGAGGCATAAT-TCAAAGCCGGGGATCAGTCTGATC
441 ATGAGCATACGGGCGTTCAGCCAG-TCGAAGAGGCATAATGGCAAAGCAGGGAAT-AGCCCGATC
** * * * ** *
17648684 CCCCTTTACATGCT-GTCGGTCCTGCTGCGACAACCCTTGGTCCGACGGGGGCTTAGACATGGAA
504 CCCCTCCACATGCTACT-GGTCCCGCTGCCACAACCCTCAGTCCGACGGGGGCTTAGACATAGAA
* * * * *
17648748 TGAACTACCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGACGTTCAGTCCGTCGGAGAGGC
568 TGAACTACCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGACGCTCAGACCGCCGGAGAGGC
* * * ** *
17648813 AAAATGCATAAACCGGGGATCGACCCGATCCCTTCTACGTGCTACCGATCCTACTATTG
633 AAAATGCACAAACCGAGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTATCG
* * ** *
17648872 CAACCATTAGTCT-AGTCCAATCTTAGACTGGAAATGAACTCTGTATGCTTAGACT-AGGGATGA
1 CAACCCTCAGTCTGA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGA-GGATGA
* * * *
17648935 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGACGCTCAGT
64 ACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
17648984 TGACCAAAGA
Statistics
Matches: 666, Mismatches: 117, Indels: 47
0.80 0.14 0.06
Matches are distributed among these distances:
691 4 0.01
692 125 0.19
693 6 0.01
694 148 0.22
695 29 0.04
696 25 0.04
697 325 0.49
698 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (691 bp):
CAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGGATGAAC
TCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCAGCCAGAGAGGTAGAAT
GCGCAAGCCGAGAATAGACCCGATCCCCCTGCATGCTATCGATCCTCCTACTAGTCCTGCTACCG
CAACCCTCAGCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGTCAGTCGAAGACGCAGAAT
GCGCAAGCCGGAACCGCCTCGATCCCCCTTAGTGCTATCAATCTTACTATCACAACCTCGTTCGA
TCTGATCTTAGACTAGGAATGAAATTCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCG
TTCAGCCAGTCGAAGAGGCATAATGGCAAAGCAGGGAATAGCCCGATCCCCCTCCACATGCTACT
GGTCCCGCTGCCACAACCCTCAGTCCGACGGGGGCTTAGACATAGAATGAACTACCTATGCCTAA
GCCAACCCATGAAACGGGCGTGCGGACGCTCAGACCGCCGGAGAGGCAAAATGCACAAACCGAGG
ATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTATCG
Found at i:17649540 original size:11 final size:11
Alignment explanation
Indices: 17649524--17649556 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17649514 CGGTTAGGCT
17649524 CTCCGACGATG
1 CTCCGACGATG
*
17649535 CTCCGACGAAG
1 CTCCGACGATG
17649546 CTCCGACGATG
1 CTCCGACGATG
17649557 GTACCTCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.15
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:17650216 original size:26 final size:26
Alignment explanation
Indices: 17650165--17650217 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17650155 TTGGTCCGAT
*
17650165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17650191 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17650217 C
1 C
17650218 CTAAGCCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17650766 original size:26 final size:26
Alignment explanation
Indices: 17650728--17650780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17650718 GGCTCAAACT
17650728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17650754 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17650780 C
1 C
17650781 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17651155 original size:158 final size:159
Alignment explanation
Indices: 17650856--17651181 Score: 424
Period size: 158 Copynumber: 2.1 Consensus size: 159
17650846 GAGGATCGGC
* * *
17650856 CCGATCCTCCTGCCACAACCCTCGGTCTGGCTACAGCTTAGACATGGAATGAACTCCTTATGCCT
1 CCGATCCTGCTGCCACAACCCCCGGTCTGGCTACAGCTTAGACATGGAATGAACTCCGTATGCCT
* * * * *
17650921 AAGCCAACCCACGACACGGGCGTACGGGCGCTCAGCCGGCCGGATAGGCAGAATGTGGAAGCCGA
66 AAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGA
* *
17650986 GGATTGGCCTGGTCCCCC-CTGCATGCTA
131 GGATCGACCTGGTCCCCCTCTGCATGCTA
* * *
17651014 TCGATCCTGCTGCCACAACCCCCGGTCTGG-TCCGATCTTAGA-ATGGGAATGAACTCCGTATGC
1 CCGATCCTGCTGCCACAACCCCCGGTCTGGCTAC-AGCTTAGACAT-GGAATGAACTCCGTATGC
* * * * * *
17651077 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGTCGGTCGGAGAGGCATAATGCGCAAGCC
64 CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCC
* *
17651142 GGGGATCGACCTGGTCCCCCTCTGCGTGCTA
129 GAGGATCGACCTGGTCCCCCTCTGCATGCTA
17651173 CCGATCCTG
1 CCGATCCTG
17651182 TTGCTGGTCC
Statistics
Matches: 143, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 4 0.03
158 122 0.85
159 17 0.12
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (159 bp):
CCGATCCTGCTGCCACAACCCCCGGTCTGGCTACAGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGA
GGATCGACCTGGTCCCCCTCTGCATGCTA
Found at i:17651259 original size:26 final size:26
Alignment explanation
Indices: 17651221--17651273 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17651211 CTGGTCTGAT
17651221 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
17651247 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
17651273 C
1 C
17651274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:17651613 original size:26 final size:26
Alignment explanation
Indices: 17651575--17651627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17651565 CTGGTTTGAT
17651575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17651601 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17651627 C
1 C
17651628 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17651648 original size:354 final size:355
Alignment explanation
Indices: 17650891--17651691 Score: 991
Period size: 355 Copynumber: 2.3 Consensus size: 355
17650881 TCTGGCTACA
* * *
17650891 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGACACGGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * *** * *
17650955 GCCGGCCGGATAGGCAGAATGTGGAAGCCGAGGATTGGCCTGGTCCCCCCTGCATGCTATCGATC
65 GCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGAACGACCCAATCCCCCCTGCATGCTATCAAAC
* * * * *
17651020 CTGCTGCCACAACCCCCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCA
130 CTACTGCCACAACCCCCAGTCTGGTCCAACCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17651085 ACCCACGAAACGAGCGTGCGGGCGCTGAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCG
195 ACCCACGAAACGAGCGTGCGGGCGCTGAGTCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCG
* * * * * ** * * *
17651150 ACCTGGTCCCCCTCTGCGTGCTACCGATCCTGTTGCTGGTCCTACTACCGTAATCCTCGGTCTGG
260 ACCTGATCCCCCTCTGCATGCTACAGATCCTGCTGCTCGTCCTACTACCCCAACCCTCAGCCTGG
17651215 TCTGATCTTAGACTGGGAATGAACTCAGTAT
325 TCTGATCTTAGACTGGGAATGAACTCAGTAT
* * *
17651246 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17651311 TCGGCCGGAGAGGTAGAATACGCAAGTCGAGGAACGACCCAATCCCCCCTGCGTGCTGTCAAACC
66 CCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGAACGACCCAATCCCCCCTGCATGCTATCAAACC
* * * *
17651376 TATTGTCGCAACCCTCAGTCCT-GTCCAACCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
131 TACTGCCACAACCCCCAGT-CTGGTCCAACCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCC
** * * * *
17651439 AACCCGTGAAATGAGCGTGCGGGTGCTTAGTCGGCCGAAAAGGTAGAATGCGCAAGCCGGGGATC
194 AACCCACGAAACGAGCGTGCGGGCGCTGAGTCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATC
* *
17651504 G-GCTCGATCCCCC-CTGCATGCTGCAGATCCTGCTGCTCGTCCTACTACCCCAACCCTCAGCCT
259 GACCT-GATCCCCCTCTGCATGCTACAGATCCTGCTGCTCGTCCTACTACCCCAACCCTCAGCCT
* *
17651567 GGTTTGATCTTAGACTGGGAATGAACTCCGTAT
323 GGTCTGATCTTAGACTGGGAATGAACTCAGTAT
* *
17651600 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
**
17651665 CCGGCCACAGAGGTAGAATGCGCAAGC
66 CCGGCCGGAGAGGTAGAATGCGCAAGC
17651692 TGGGGATTGG
Statistics
Matches: 376, Mismatches: 66, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
354 157 0.42
355 215 0.57
356 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGAACGACCCAATCCCCCCTGCATGCTATCAAACC
TACTGCCACAACCCCCAGTCTGGTCCAACCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTGAGTCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCGA
CCTGATCCCCCTCTGCATGCTACAGATCCTGCTGCTCGTCCTACTACCCCAACCCTCAGCCTGGT
CTGATCTTAGACTGGGAATGAACTCAGTAT
Found at i:17651756 original size:196 final size:195
Alignment explanation
Indices: 17651405--17651930 Score: 616
Period size: 196 Copynumber: 2.7 Consensus size: 195
17651395 CCTGTCCAAC
* ** * * * * **
17651405 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAATGAGCGTGCGGGTGCTTAGT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
*
17651470 CGGCCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTGCAGATCCT
66 CGGCCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCTAGATCCCCCCTGCATGCTGCAGATCCT
* * * **
17651535 GCTGCTCGTCCTACTACCCCAACCCTCAG-CCTGGTTTGATCTTAGACTGGGAATGAACTCCGTA
131 GCTGCTAGTCCTACTACCACAACCCT-AGATC-GGTCCGATCTTAGACTGGGAATGAACTCCGTA
17651599 TG
194 TG
17651601 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* * * * *
17651666 CGGCC-ACAGAGGTAGAATGCGCAAGCTGGGGATTGGCCTAG-TCCCCCTTGCATGTTGTC-GAT
66 CGGCCGA-AAAGGTAGAATGCGCAAGCCGGGGATCGG-CTAGATCCCCCCTGCATGCTG-CAGAT
*
17651728 CCTGCTGCTAGTCCTGCTACCACAACCCTAGATGCGGTCCGATCTTAGACTGGGAATGAACTCCG
128 CCTGCTGCTAGTCCTACTACCACAACCCTAGAT-CGGTCCGATCTTAGACTGGGAATGAACTCCG
17651793 TATG
192 TATG
* * * * *
17651797 CTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGAGCTCAG
1 CTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * * * * *
17651861 CCGGTCGGAAAGGTAGAATGCGCAGGTCGGGGACCGG-TCCGGTCCCCCCTGCGTGCTGTC-GAT
65 CCGGCCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCT-AGATCCCCCCTGCATGCTG-CAGAT
17651924 CCTGCTG
128 CCTGCTG
17651931 TCGCAACCTT
Statistics
Matches: 283, Mismatches: 38, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
194 1 0.00
195 5 0.02
196 272 0.96
197 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (195 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGGCCGAAAAGGTAGAATGCGCAAGCCGGGGATCGGCTAGATCCCCCCTGCATGCTGCAGATCCT
GCTGCTAGTCCTACTACCACAACCCTAGATCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17651800 original size:26 final size:26
Alignment explanation
Indices: 17651771--17651823 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17651761 GCGGTCCGAT
17651771 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
17651797 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17651823 C
1 C
17651824 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17652164 original size:26 final size:26
Alignment explanation
Indices: 17652126--17652178 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17652116 CCGCTCTGAT
*
17652126 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17652152 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17652178 C
1 C
17652179 CTAAGGCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17652260 original size:355 final size:355
Alignment explanation
Indices: 17651601--17652371 Score: 969
Period size: 355 Copynumber: 2.2 Consensus size: 355
17651591 ACTCCGTATG
* * *
17651601 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
* * ** * * * * *
17651666 CGGCCACAGAGGTAGAATGCGCAAGCTGGGGATTGGCCTAGTCCCCCTTGCATGTTGTCGATCCT
66 CGACCACAGAGGCAGAATGCGCAAGCCAGGGATAGCCCGAGTCCCCCTTACATGCTGTCGATCCT
* *
17651731 GCTGCTAGTCCTGCTACCACAACCCTAGATGCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 GCTGCTAGTCCTGCTACCACAACCCTAGATCCGCTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
17651796 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGAGCTCAG
196 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGAGCTCAG
* * * * * * * *
17651861 CCGGTCGGAAAGGTAGAATGCGCAGGTCGGGGACCGGTCCGGTCCCC-CCTGCGTGCTGTCGATC
261 CCAGCCAGAAAGGGAGAATGCGAAGCTCGGGGACCGGCCCGGTCCCCACCTGCGTACTGTCGATC
* * * **
17651925 CTGCTGTCGCAACCTTCATTCCGGTCTGAT
326 CTGCTGCCGCAACCCTCAGTCCAATCTGAT
*
17651955 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
* ** *
17652020 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGA-TCCCTTCC-TACGTGCTGTCGAT
66 CGACCACAGAGGCAGAATGCGCAAGCCAGGGAT-AGCCCGAGTCCC--CCTTACATGCTGTCGAT
* * ** * * * *
17652083 CCTGTTGCTGGTCCTGCTGTCGCAACCCTCGATCCGCTCTGATCTTAGACTGGGAATGAACTCGG
128 CCTGCTGCTAGTCCTGCTACCACAACCCTAGATCCGCTCCGATCTTAGACTGGGAATGAACTCCG
* * *
17652148 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCC-ACCCATGAAACGAGCGTACGGGTGC
193 TATGCTTAGACATGGAATGAACTCCGTATGCCTAA-GCCAACCCACGAAACGAGCATACGGGAGC
* * *
17652212 TCAGCCAGCCAGAGAGGGAGAATGCGTAAGCT-GGGTATCGGCCCGGTCCCCACCTGCGTACTGT
257 TCAGCCAGCCAGAAAGGGAGAATGCG-AAGCTCGGGGACCGGCCCGGTCCCCACCTGCGTACTGT
* *
17652276 CGATCCTGCTGCCGCAACCCTCGGTCCAATTTGAT
321 CGATCCTGCTGCCGCAACCCTCAGTCCAATCTGAT
* * * *
17652311 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCT
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCT
17652372 GAGTCGGTCG
Statistics
Matches: 356, Mismatches: 54, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
354 91 0.26
355 164 0.46
356 101 0.28
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
CGACCACAGAGGCAGAATGCGCAAGCCAGGGATAGCCCGAGTCCCCCTTACATGCTGTCGATCCT
GCTGCTAGTCCTGCTACCACAACCCTAGATCCGCTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGAGCTCAG
CCAGCCAGAAAGGGAGAATGCGAAGCTCGGGGACCGGCCCGGTCCCCACCTGCGTACTGTCGATC
CTGCTGCCGCAACCCTCAGTCCAATCTGAT
Found at i:17652558 original size:159 final size:159
Alignment explanation
Indices: 17652151--17652569 Score: 402
Period size: 159 Copynumber: 2.6 Consensus size: 159
17652141 AACTCGGTAT
*
17652151 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCC-ACCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAA-GCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * * * *
17652215 GCC-AGCCAGAGAGGGAGAATGCGTAAGCTG-GGTATCGGCCCGGTCCCCACCTGCGTACTGTCG
65 GCCGA-TCAGAGAGGCAGAATGCGCAAGCCGAGG-ATCGACCCGGTCCCCACATACGTACTGTCG
* * * * *
17652278 ATCCTGCTGCCGCAACCCTCGGTCCAATTTGA
128 ATCCCGCTACCACAACCCTCGGTCCAACTGGA
* * * * * *
17652310 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * * * *
17652374 GTCGGTCGGAGAGCCATAATACGCAAGCCGAGGATCGACCCGGTCCCC-CTATACGTGCTGTC-A
65 GCCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCAC-ATACGTACTGTCGA
* ** *
17652437 GTCCCGCTACCACAACCTTCGGTCCGGCTGGG
129 -TCCCGCTACCACAACCCTCGGTCCAACTGGA
* * ** *
17652469 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGTGCTCA
*
17652533 GCCGATAAGAGAGGCAGAATGCGCAAGCCGAGGATCG
65 GCCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCG
17652570 GTCTGGTCCC
Statistics
Matches: 205, Mismatches: 47, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
158 6 0.03
159 196 0.96
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
CCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCACATACGTACTGTCGATC
CCGCTACCACAACCCTCGGTCCAACTGGA
Found at i:17653605 original size:26 final size:26
Alignment explanation
Indices: 17653576--17653628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17653566 CCGGTCCGAT
17653576 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
17653602 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
17653628 C
1 C
17653629 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17654106 original size:26 final size:26
Alignment explanation
Indices: 17654077--17654129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17654067 TCGGTCTGAT
17654077 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
* * *
17654103 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
17654129 C
1 C
17654130 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:17654836 original size:26 final size:26
Alignment explanation
Indices: 17654798--17654850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17654788 GGCTCAAAAT
17654798 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17654824 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17654850 C
1 C
17654851 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17655743 original size:26 final size:26
Alignment explanation
Indices: 17655705--17655757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17655695 GGCTCAAAAT
17655705 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17655731 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
17655757 C
1 C
17655758 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17656015 original size:185 final size:185
Alignment explanation
Indices: 17655703--17656095 Score: 486
Period size: 185 Copynumber: 2.1 Consensus size: 185
17655693 GTGGCTCAAA
* * *
17655703 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
17655768 CCACGAAACAAGCGTACGAGAGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGC
66 CCACGAAACAAGCGTACGAGAGCTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAAC
* * * * *
17655833 CTGGTCCCCCTCTGCGTGCTG-TCGATCCTACTGCCACAACCCTCGGTCTGGTCT-G
131 CCGATCCCCCTCTGCGTGCTGCT-GATCCCACTACCACAACCCTCGATCTGGT-TAG
* * *
17655888 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGA-TTAGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17655952 CCCACGAAACGAGCGTGCGGGCGTTAAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAA
65 CCCACGAAACAAGCGTACGAGAGCTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAA
* *
17656017 CCCGATCCCCCTCTGCGTGCTGCTGGTCCCGCTACCACAACCCTCGATCTGGTTAG
130 CCCGATCCCCCTCTGCGTGCTGCTGATCCCACTACCACAACCCTCGATCTGGTTAG
** * *
17656073 GGCCTAGACATGGAATGAACTCC
1 ATCTTAGACTTGGAATGAACTCC
17656096 CTATGCCTAA
Statistics
Matches: 177, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
184 2 0.01
185 174 0.98
186 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
ATCTTAGACTTGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTACGAGAGCTAAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAAC
CCGATCCCCCTCTGCGTGCTGCTGATCCCACTACCACAACCCTCGATCTGGTTAG
Found at i:17656307 original size:157 final size:155
Alignment explanation
Indices: 17655928--17656358 Score: 499
Period size: 157 Copynumber: 2.7 Consensus size: 155
17655918 TAGATTAGGG
* * *
17655928 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGTTAAGCCGGCCGAAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGAGTT-AG-CGGCCG-AGAG
* * * *
17655992 GCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCGTGCTG-CTGGTCCCGCTACCACA
63 GCAGAATGCGCAAGCC-AGGATCGACCCGATCCCCC-CTGCGTGCTGTC-GATCCCGCTACCACA
17656056 ACCCTCGATCTGGTTAGGGCCTAGACATGGA
125 ACCCTCGATCTGGTTAGGGCCTAGACATGGA
* * *
17656087 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCAGGCACTTAGCTGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGAGTTAGC-GGCC-GAGAGG
* * *
17656152 TAGAATGCGCAAGCCAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAACCC
64 CAGAATGCGCAAGCCAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCC
* * *
17656217 TCGGTCTGGTTGGGGCTTAGACATGGA
129 TCGATCTGGTTAGGGCCTAGACATGGA
* * * *
17656244 ATGAACTCCCTATGCCTAAGCCAA-CCACGAAATGGGCGTGCAGGGTGTTCAGTCGACCAGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGAGTT-AG-CGGCC-GAGAG
* * * * * *
17656308 GCAGAATGCGCAAGCCAGGGATTGTCTCGGTCCCCCCTGCGTACGGTCGAT
63 GCAGAATGCGCAAGCCA-GGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
17656359 ACTGTTGTCG
Statistics
Matches: 234, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
156 19 0.08
157 101 0.43
158 46 0.20
159 63 0.27
160 5 0.02
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.17
Consensus pattern (155 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGGAGTTAGCGGCCGAGAGGCA
GAATGCGCAAGCCAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTC
GATCTGGTTAGGGCCTAGACATGGA
Found at i:17656419 original size:26 final size:26
Alignment explanation
Indices: 17656390--17656442 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17656380 CCGATCTAAT
17656390 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
17656416 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17656442 C
1 C
17656443 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17657139 original size:159 final size:158
Alignment explanation
Indices: 17656779--17657181 Score: 429
Period size: 159 Copynumber: 2.5 Consensus size: 158
17656769 AACTCCACAT
* * *
17656779 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-G
* * * **
17656843 ACCGGTCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCCGTCGATC
65 ACCGATCGAAGAGGCAGAATGCAAAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCCACCGATC
** * *
17656908 CTGCTGTCACAACCCTCCGTCCGATCCGA
130 CCACTGCCACAACCCTCCGTCCGATCAGA
* * * * *
17656937 TCTTAGACTAT-GAATGAACTCCATATGCCTAAGTCAACGCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * ** * * *
17657001 GCCGATCGAAGAGGCATAATGCAAAAGCTGAGGATCGGCCCGGTCCCCTTCTGCGTGCTACCGAT
66 -CCGATCGAAGAGGCAGAATGCAAAAGCCGAGGATCGGCCCAATCCCC-CCTACGTGCCACCGAT
* *
17657066 CCCACTGCCACAACCCT-CGATCTGA-CTAGG
129 CCCACTGCCACAACCCTCCG-TCCGATC-AGA
* * * *
17657096 GCTTATA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCG
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-G
* *
17657160 ATCGATCGGAGAGGCAGAATGC
65 ACCGATCGAAGAGGCAGAATGC
17657182 GCAAGCCGGG
Statistics
Matches: 200, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 98 0.49
159 99 0.50
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
CCGATCGAAGAGGCAGAATGCAAAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCCACCGATCC
CACTGCCACAACCCTCCGTCCGATCAGA
Found at i:17657205 original size:159 final size:159
Alignment explanation
Indices: 17656779--17657281 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 159
17656769 AACTCCACAT
* * *
17656779 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCG
* * ** * ***
17656843 ACCGGTCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCCGTCGATC
66 ACCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATC
** * *
17656908 CTGCTGTCACAACCCTCCGTCCGATCCGA
131 CCACTGCCACAACCCTCCGTCCGATCAGA
* * * * *
17656937 TCTTAGACTAT-GAATGAACTCCATATGCCTAAGTCAACGCACGAAACGAGCGTGCAGGCACT-G
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCG
* * * *
17657000 AGCCGATCGAAGAGGCATAATGCAAAAGCTGAGGATCGGCCCGGTCCCCTTCTGCGTGCTACCGA
66 A-CCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCC-CCTGCGTGCTACCGA
* *
17657065 TCCCACTGCCACAACCCT-CGATCTGA-CTAGG
129 TCCCACTGCCACAACCCTCCG-TCCGATC-AGA
* * * *
17657096 GCTTATA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCG
1 GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCG
* * * * ** * * *
17657160 ATCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCCTGCGTGCTGCCAATC
66 ACCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATC
** * * * *
17657225 CTGCTGTCACAACCC-CCGGTCTGGTCCGA
131 CCACTGCCACAACCCTCC-GTCCGATCAGA
* * *
17657254 TCTTAGACT-GGGAATGAACTCCGTATGC
1 GCTTAGACTATGGAATGAACTCCATATGC
17657282 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 152 0.55
159 121 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACTATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCG
ACCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATC
CCACTGCCACAACCCTCCGTCCGATCAGA
Found at i:17657284 original size:26 final size:26
Alignment explanation
Indices: 17657255--17657307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17657245 CTGGTCCGAT
17657255 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17657281 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17657307 C
1 C
17657308 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17664185 original size:21 final size:21
Alignment explanation
Indices: 17664151--17664196 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
17664141 ATCGACCCGA
**
17664151 TCCCCCTCTACATGCTGTCGG
1 TCCCCCTCTACATGCTACCGG
* *
17664172 TCCCCTTCTGCATGCTACCGG
1 TCCCCCTCTACATGCTACCGG
17664193 TCCC
1 TCCC
17664197 GCTAGCCACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.46, G:0.17, T:0.28
Consensus pattern (21 bp):
TCCCCCTCTACATGCTACCGG
Found at i:17664427 original size:26 final size:26
Alignment explanation
Indices: 17664391--17664443 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17664381 CCAGTCCAAT
* * *
17664391 CTTAGATTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17664417 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17664443 C
1 C
17664444 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17665309 original size:26 final size:26
Alignment explanation
Indices: 17665273--17665325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17665263 CTAGTTTGAT
*
17665273 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17665299 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17665325 C
1 C
17665326 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17666033 original size:26 final size:26
Alignment explanation
Indices: 17665995--17666047 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17665985 GGCTCAAAAT
* *
17665995 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17666021 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17666047 C
1 C
17666048 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17666350 original size:26 final size:26
Alignment explanation
Indices: 17666321--17666373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17666311 CCGATCCAAT
* *
17666321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCATATG
*
17666347 CTTAGACGGGGGATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
17666373 C
1 C
17666374 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:17667414 original size:26 final size:26
Alignment explanation
Indices: 17667375--17667425 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17667365 GATCTGATCT
17667375 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
17667401 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
17667426 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:17668325 original size:158 final size:157
Alignment explanation
Indices: 17667790--17668598 Score: 535
Period size: 158 Copynumber: 5.1 Consensus size: 157
17667780 GCTTAGAGGT
* *
17667790 GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* * * * * * ** * *
17667855 AGGAAGAATGCGTAAGTCGAGGACTGGCCCA-CTCCCCCCAGCATGCTGTCGATCCTACTGTCAC
66 AGGCAGAATGCGCAAGCCGAGGA-TCGACCAGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCAC
* **
17667919 AACCCTCTGTCGAGTTTGATCTTAGACTG
130 AACCCT-TGTCCAGTCCGATCTTAGACTG
* * * * *
17667948 GGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCC-GAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAG-A
* * * ** ** * * *
17668012 CAAGCATAATGCGCAAGCCGAGGATCGACTTGGTCCCCCTCTAAGTGCTGTCGGTCCCGCTGCCA
65 GAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCT-TGCGTGCTGTCGATCCTGCTGTCA
* ** * * ** *
17668077 TAACCCTCCATCC-GGCTGGGGCTCAGACAT-
129 CAACCCT-TGTCCAGTC-CGATCTTAGAC-TG
* * * * * * * **
17668107 GCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTACGGGTGCTCAGTCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* * * *
17668172 TGGCAGAATGCGCAAGCC-AGGGATCGACGAGGTCCACCCTTGCGTGCTG-CCATCCTGCTGTCG
66 AGGCAGAATGCGCAAGCCGA-GGATCGACCAGGTCC-CCCTTGCGTGCTGTCGATCCTGCTGTCA
17668235 CAACCCTTGGTCCAGTCCGATCTTAGACTG
129 CAACCCTT-GTCCAGTCCGATCTTAGACTG
* * * * *
17668265 GGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTGAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
* * * * * * * *
17668330 AGGCATAAT-CGCAAGCTG-GAGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCGAG-GATCGACCAGGTCCCCCT-TGCGTGCTGTCGATCCTGCTGTCA
* * * * *
17668393 TAACCCTCAGTCC-GGCTAGGTCTTAGACAT-
129 CAACCCT-TGTCCAGTC-CGATCTTAGAC-TG
* * * * * * * * * *
17668423 GGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGTGCTCAGCTC-ACCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC-CGACCAGA
* * * * * * * * * *
17668487 AAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCATTACATGCTGTCGATCCTGCT-ACTG
65 GAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTC-A
* ** *
17668551 CAACCCTCAGTCTGGACCGATCTTAGACTG
129 CAACCCT-TGTCCAGTCCGATCTTAGACTG
17668581 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
17668599 TTTGGCATGG
Statistics
Matches: 496, Mismatches: 131, Indels: 48
0.73 0.19 0.07
Matches are distributed among these distances:
156 5 0.01
157 35 0.07
158 304 0.61
159 145 0.29
160 7 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
AGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCACA
ACCCTTGTCCAGTCCGATCTTAGACTG
Found at i:17668454 original size:316 final size:317
Alignment explanation
Indices: 17667936--17668598 Score: 870
Period size: 316 Copynumber: 2.1 Consensus size: 317
17667926 TGTCGAGTTT
* *
17667936 GATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTG
* * ** *
17668001 AGCCGGCCGAACAAGCATAATGCGCAAGCCGAGGATCGACTTGGTCCCCCTCTAAGTGCTGTCGG
66 AACCGACCGAACAAGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGG
*
17668066 TCCCGCTGCCATAACCCTCCATCCGGCTGGGGCTCAGACATGCAATGAACTCCCTATGCCTAAGC
131 TCCCGCTGCCATAACCCTCCATCCGGCTAGGGCTCAGACATGCAATGAACTCCCTATGCCTAAGC
* **
17668131 CAACCCACGAAACGGGGGTACGGGTGCTCAG-TCGACCAGAGTGGCAGAATGCGCAAGCCAGGGA
196 CAACCCACGAAACGGGGGTACAGGTGCTCAGCTC-ACCAGAAAGGCAGAATGCGCAAGCCAGGGA
* * * * * ** *
17668195 TCGACGAGGTCCACCCTTGCGTGCTG-CCATCCTGCT-GTCGCAACCCTTGGTCCAGTCC
260 TCGACCAGGTCC-CCATTACATGCTGTCCATCCTGCTACT-GCAACCCTCAGTCCAGACC
*
17668253 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTG
* * * * **
17668318 AACCGACCGGAGAGGCATAAT-CGCAAGCTG-GAGATCGACCCGATCCCCCTCTGTGTGCTGTCG
66 AACCGACCGAACAAGCATAATGCGCAAGCCGAG-GATCGACCCGATCCCCCTCTAAGTGCTGTCG
* * * *
17668381 GTCCCGCTGCCATAACCCT-CAGTCCGGCTAGGTCTTAGACATGGAATGAAGTCCCTATGCCTAA
130 GTCCCGCTGCCATAACCCTCCA-TCCGGCTAGGGCTCAGACATGCAATGAACTCCCTATGCCTAA
* * * * * *
17668445 GCCAACCCACGAAATGGGTGTGCAGGTGCTCAGCTCACCGGAAAGGCAGAATGTGCAAGCCGGGG
194 GCCAACCCACGAAACGGGGGTACAGGTGCTCAGCTCACCAGAAAGGCAGAATGCGCAAGCCAGGG
* * * **
17668510 ATCGGCCCGGTCCCCATTACATGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGGACC
259 ATCGACCAGGTCCCCATTACATGCTGTCCATCCTGCTACTGCAACCCTCAGTCCAGACC
17668569 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
17668599 TTTGGCATGG
Statistics
Matches: 299, Mismatches: 42, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
315 13 0.04
316 205 0.69
317 81 0.27
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTG
AACCGACCGAACAAGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTAAGTGCTGTCGG
TCCCGCTGCCATAACCCTCCATCCGGCTAGGGCTCAGACATGCAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGGGGGTACAGGTGCTCAGCTCACCAGAAAGGCAGAATGCGCAAGCCAGGGAT
CGACCAGGTCCCCATTACATGCTGTCCATCCTGCTACTGCAACCCTCAGTCCAGACC
Found at i:17668771 original size:183 final size:183
Alignment explanation
Indices: 17668420--17668781 Score: 460
Period size: 183 Copynumber: 2.0 Consensus size: 183
17668410 AGGTCTTAGA
*
17668420 CATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGTGCTCAGCTCACCG
1 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTG-AGGTGCTCAGCTCACCG
* * * * *
17668485 GAAAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCATTACATGCTGTCGATCCTGCTACT
65 GAAAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCACTACATGCTATCGATCCTGCTACC
*
17668550 GCAACCCTCAGTCTGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGG
130 GCAACCCTCAGTCTAGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGG
** * * *
17668604 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTG-GGTGCTCATC-CAGT
1 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-GTGTGAGGTGCTCAGCTCA-C
* * * * * * * *
17668667 CGGAGAGGCAGAATGTGTAAGTCGAGGAT-GATCCGGTCCCCCCTGCGTGCTATCGATCCTGCTG
63 CGGAAAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCACTACATGCTATCGATCCTGCTA
* * *
17668731 CCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
128 CCGCAACCCTCAGTCTAGACCGATCTTAGACTGGGAATGAACTCCGTATGC
17668782 CTAACCCAAC
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
183 75 0.49
184 71 0.47
185 1 0.01
186 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (183 bp):
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGAGGTGCTCAGCTCACCGG
AAAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCACTACATGCTATCGATCCTGCTACCG
CAACCCTCAGTCTAGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGG
Found at i:17668900 original size:342 final size:342
Alignment explanation
Indices: 17668265--17668900 Score: 719
Period size: 341 Copynumber: 1.9 Consensus size: 342
17668255 TCTTAGACTG
* *
17668265 GGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTGAACCGACCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * *
17668330 AGGCATAATCGCAAGCTGGAGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCATA
66 AGGCAGAATCGCAAGCTCGAGATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCACA
* * * * *
17668395 ACCCTCAGTCCGGCTAGGTCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAAT
131 ACCCTCAGTCAGGCTAGATCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAAC
* * * * * * ** * *
17668460 GGGTGTGCAGGTGCTCAGCTCACCGGAAAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCC
196 GAGCGTACAGGCGCTAAGCTCACCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCGATCCCC
* **
17668525 ATTACATGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGGACCGATCTTAGACTGGGAATGAAC
261 ATTACATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGACCGATCTTAGACTGGGAATGAAC
17668590 TCCGTATGCTTTGGCAT
326 TCCGTATGCTTTGGCAT
* * * * * *
17668607 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCATCC-AGTCGGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGA-CCGGA
* * * * *
17668671 GAGGCAGAATGTGTAAG-TCGAGGAT-GATCCGGTCCCCC-CTGCGTGCTATCGATCCTGCTGCC
65 GAGGCAGAAT-CGCAAGCTCGA-GATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCC
* * * * *
17668733 GCAACCCTCGGTCTAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAACCCAACCCAT
128 ACAACCCTCAGTC-AGGCTAGATCTTAGACAT-GGAATGAACTCCCTATGCCTAACCCAACCCAC
* * *
17668796 GAAACGAGCGTACGGGCGCTAAGC-CAGTCGGAAAGGCATAATGTACAAGCCAAGGATCAGCCCG
191 GAAACGAGCGTACAGGCGCTAAGCTCA-CCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCG
* * * *
17668860 ATCCCCCTTTGCGTGCTGTCGGTCCCGCTACCACAACCCTC
255 AT-CCCCATTACATGCTGTCGATCCCGCTACCACAACCCTC
17668901 GATCTGACTG
Statistics
Matches: 238, Mismatches: 49, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
340 3 0.01
341 117 0.49
342 111 0.47
343 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (342 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATCGCAAGCTCGAGATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCACA
ACCCTCAGTCAGGCTAGATCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAAC
GAGCGTACAGGCGCTAAGCTCACCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCGATCCCC
ATTACATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGACCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTTGGCAT
Found at i:17668920 original size:342 final size:342
Alignment explanation
Indices: 17668265--17668940 Score: 715
Period size: 342 Copynumber: 2.0 Consensus size: 342
17668255 TCTTAGACTG
* *
17668265 GGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTGAACCGACCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * * * * *
17668330 AGGCATAATCGCAAGCTGGAGATCGACCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCATA
66 AGGCAGAATCGCAAGCTCGAGATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCACA
* * * * *
17668395 ACCCTCAGTCCGGCTAGGTCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAAT
131 ACCCTCAGTCAGGCTAGATCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAAC
* * * * * * ** * *
17668460 GGGTGTGCAGGTGCTCAGCTCACCGGAAAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCC
196 GAGCGTACAGGCGCTAAGCTCACCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCGATCCCC
* ** *
17668525 ATTACATGCTGTCGATCCTGCTACTGCAACCCTCAGTCTGGACCGATCTTAGAC-TGGGAATGAA
261 ATTACATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGACCGAGCTTAGACAT-GGAATGAA
*
17668589 CTCCGTATGCTTTGGCAT
325 CTCCCTATGCTTTGGCAT
* * * * * *
17668607 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCATCC-AGTCGGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGA-CCGGA
* * * * *
17668671 GAGGCAGAATGTGTAAG-TCGAGGAT-GATCCGGTCCCCC-CTGCGTGCTATCGATCCTGCTGCC
65 GAGGCAGAAT-CGCAAGCTCGA-GATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCC
* * * * *
17668733 GCAACCCTCGGTCTAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAACCCAACCCAT
128 ACAACCCTCAGTC-AGGCTAGATCTTAGACAT-GGAATGAACTCCCTATGCCTAACCCAACCCAC
* * *
17668796 GAAACGAGCGTACGGGCGCTAAGC-CAGTCGGAAAGGCATAATGTACAAGCCAAGGATCAGCCCG
191 GAAACGAGCGTACAGGCGCTAAGCTCA-CCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCG
* * * * * *
17668860 ATCCCCCTTTGCGTGCTGTCGGTCCCGCTACCACAACCCTC-GATCT-GACTGGGGCTTAGACAT
255 AT-CCCCATTACATGCTGTCGATCCCGCTACCACAACCCTCAG-TCTGGAC-CGAGCTTAGACAT
17668923 GGAATGAACTCCCTATGC
317 GGAATGAACTCCCTATGC
17668941 CTAAGCCAAC
Statistics
Matches: 271, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
340 3 0.01
341 121 0.45
342 139 0.51
343 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATCGCAAGCTCGAGATCGACCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCACA
ACCCTCAGTCAGGCTAGATCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAAC
GAGCGTACAGGCGCTAAGCTCACCGGAAAGGCAGAATGTACAAGCCAAGGATCAGCCCGATCCCC
ATTACATGCTGTCGATCCCGCTACCACAACCCTCAGTCTGGACCGAGCTTAGACATGGAATGAAC
TCCCTATGCTTTGGCAT
Found at i:17668950 original size:159 final size:157
Alignment explanation
Indices: 17668604--17669042 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 157
17668594 TATGCTTTGG
* * * *
17668604 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCATCCAGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGTCG
** * * * * * * * *
17668669 GAGAGGCAGAATGTGTAAGTCGAGGATGATCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCG
66 GAGAGGCAGAATGTACAAGCCAAGGATCACCCGATCCCCCCTGCGTGCTATCGATCCCGCTACCA
* * *
17668734 CAACCCTCGGTCTAGTCTGATCTTAGA
131 CAACCCTCGATCTAGACTGAGCTTAGA
* * * *
17668761 C-TGGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTACGGGCGCTAAGCCAGTC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGTC
* * * * *
17668825 GGAAAGGCATAATGTACAAGCCAAGGATCAGCCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTA
65 GGAGAGGCAGAATGTACAAGCCAAGGATCA-CCCGATCCCCC-CTGCGTGCTATCGATCCCGCTA
*
17668890 CCACAACCCTCGATCT-GACTGGGGCTTAGA
128 CCACAACCCTCGATCTAGACT-GAGCTTAGA
* * * *
17668920 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGCCAGCCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGTCG
* * * ** * * * *
17668985 GAGAGGCAGAATGCATAAGTCGGGGATCAGTCCGGTCACCCCTGCGTGCTGTCGATCC
66 GAGAGGCAGAATGTACAAGCCAAGGATCA-CCCGATCCCCCCTGCGTGCTATCGATCC
17669043 TACTATCGCA
Statistics
Matches: 230, Mismatches: 47, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
156 1 0.00
157 77 0.33
158 27 0.12
159 124 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGTCG
GAGAGGCAGAATGTACAAGCCAAGGATCACCCGATCCCCCCTGCGTGCTATCGATCCCGCTACCA
CAACCCTCGATCTAGACTGAGCTTAGA
Found at i:17669056 original size:500 final size:498
Alignment explanation
Indices: 17668112--17669149 Score: 1233
Period size: 500 Copynumber: 2.1 Consensus size: 498
17668102 GACATGCAAT
* * * ** * * * *
17668112 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTACGGGTGCTCAGTCGA-CCAGAGTGGC
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCA-TCCAGTCGGAGAGGC
* * * * * * * *
17668176 AGAATGCGCAAG-CCAGGGATCGA-CGAGGTCCACCCTTGCGTGCT-GCCATCCTGCTGTCGCAA
65 AGAATGTGTAAGTCGA-GGAT-GATC-CGGTCC-CCCCTGCGTGCTATCGATCCTGCTGCCGCAA
* * **
17668238 CCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACG
126 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCCAAGAAACG
* * **
17668303 AGCGTGCGGGCGCTGAACCGACCGGAGAGGCATAATCGCAAGCTGGAGATCGACCCGATCCCCCT
191 AGCGTACGGGCGCTGAACCGACCGGAAAGGCATAATCGCAAGCAAGAGATCGACCCGATCCCCCT
* * * * * *
17668368 CTGTGTGCTGTCGGTCCCGCTGCCATAACCCTCAGTCCGGCTAGGTCTTAGACATGGAATGAAGT
256 CTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACT
* **
17668433 CCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGTGCTCAGCTCACCGGAAAGGCAGAATG
321 CCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGTGCTCAGCTCACCGGAAAGGCAGAATG
** * * *
17668498 TGCAAGCCGGGGATCGGCCCGGTCCCCATTACATGCTGTCGATCCTGCTACTGCAACCCTCAGTC
386 CACAAGCCGGGGATCAGCCCGGTCCCCACTACATGCTGTCGATCCTACTACTGCAACCCTCAGTC
* * *
17668563 TGGA-CCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGGCAT-GGAA
451 -CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAA
* * *
17668611 TGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGTGCTCATCCAGTCGGAGAGGC
1 -GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCATCCAGTCGGAGAGGC
17668676 AGAATGTGTAAGTCGAGGATGATCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCT
65 AGAATGTGTAAGTCGAGGATGATCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCT
* * *
17668741 CGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCG
130 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCCAAGAAACGAGCG
*
17668806 TACGGGCGCT-AAGCC-AGTCGGAAAGGCATAAT-GTACAAGCCAAG-GATC-AGCCCGATCCCC
195 TACGGGCGCTGAA-CCGA-CCGGAAAGGCATAATCG--CAAG-CAAGAGATCGA-CCCGATCCCC
* * *
17668866 CTTTGCGTGCTGTCGGTCCCGCTACCACAACCCTC-GATCTGACTGGGGCTTAGACATGGAATGA
254 CTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAG-TCCGACTAGGGCTTAGACATGGAATGA
* * *
17668930 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGC-CAGCCGGAGAGGCAG
318 ACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGTGCTCAGCTCA-CCGGAAAGGCAG
* * * * *
17668994 AATGCATAAGTCGGGGATCAGTCCGGTCACCC-CTGCGTGCTGTCGATCCTACTA-TCGCAACCC
382 AATGCACAAGCCGGGGATCAGCCCGGTC-CCCACTACATGCTGTCGATCCTACTACT-GCAACCC
* *
17669057 TCGGTCCGATCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGGAA
445 TCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAA
*
17669112 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
17669150 TCGGGCACTC
Statistics
Matches: 455, Mismatches: 66, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
498 15 0.03
499 119 0.26
500 310 0.68
501 11 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (498 bp):
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCATCCAGTCGGAGAGGCA
GAATGTGTAAGTCGAGGATGATCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTC
GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCCAAGAAACGAGCGT
ACGGGCGCTGAACCGACCGGAAAGGCATAATCGCAAGCAAGAGATCGACCCGATCCCCCTCTGCG
TGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGGGCATGCAGGTGCTCAGCTCACCGGAAAGGCAGAATGCACAA
GCCGGGGATCAGCCCGGTCCCCACTACATGCTGTCGATCCTACTACTGCAACCCTCAGTCCGATC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
Found at i:17669101 original size:26 final size:26
Alignment explanation
Indices: 17669072--17669124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17669062 CCGATCCGAT
*
17669072 CTTATACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
17669098 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
17669124 C
1 C
17669125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:17669310 original size:26 final size:26
Alignment explanation
Indices: 17669281--17669333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17669271 CACGTCCGAC
17669281 CTTAGAC-TAGGAACGAACTCCGTATG
1 CTTAGACAT-GGAACGAACTCCGTATG
*
17669307 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCGTATG
17669333 C
1 C
17669334 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:17669709 original size:159 final size:159
Alignment explanation
Indices: 17669306--17669809 Score: 412
Period size: 159 Copynumber: 3.2 Consensus size: 159
17669296 AACTCCGTAT
* * *
17669306 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAG
** * * * * *
17669371 CCAACCGGA-AAGGTAGAATACGTAAGCCAGGGACCGATCCGATCCCCCCTAGCGTGCTATCGAT
66 CCAGTCGGAGAA-GCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTAGCGTGCTACCGAT
* * * *
17669435 CCTGCTGCCATAACCTTCAGTCCGATCCGA
130 CCCGCTGCAACAACCCTCAGTCCGATCCGA
* * * * * * *
17669465 TCTTAGACAGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGT-TCGAATGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGA-GCTCA
* * * * ** * * * * *
17669529 ACCAGTCAGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCT-GCGTGTTGCCGG
65 GCCAGTCGGAGAAGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCC-CTAGCGTGCTACCGA
* * *
17669593 TCCCGCTGCAACAACCCTCGGTCCGA-CTGGG
129 TCCCGCTGCAACAACCCTCAGTCCGATC-CGA
* *
17669624 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAG
* * * ** * * *
17669689 TCGGTCGGAGAAGCAGAATGCGCAAGTC-GAGGATAGACCC-AGTCCCCCCTA-CGTACTGCTGA
66 CCAGTCGGAGAAGCAGAATGCGCAAGCCAG-GGACCGACCCGA-TCCCCCCTAGCGTGCTACCGA
* * * * *
17669751 TCCTGCTACAGCAACCCTCAGTCCGGTCTGA
129 TCCCGCTGCAACAACCCTCAGTCCGATCCGA
* * *
17669782 TCTTAGGC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17669810 TTAGACATGG
Statistics
Matches: 265, Mismatches: 70, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 202 0.76
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAG
CCAGTCGGAGAAGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTAGCGTGCTACCGATC
CCGCTGCAACAACCCTCAGTCCGATCCGA
Found at i:17669951 original size:184 final size:184
Alignment explanation
Indices: 17669626--17669990 Score: 421
Period size: 184 Copynumber: 2.0 Consensus size: 184
17669616 CGACTGGGGG
* ** * **
17669626 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGAGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTCAGGCAGCTCAACC
* * *
17669691 GGTCGGAGAAGCAGAATGCGCAAGTCGAGGATAGACCCAGTCCCCCCTACGTACTGCTGATCCTG
66 GGCCGGAGAAGCAGAATGCGCAAGCCGAGGACAGACCCAGTCCCCCCTACGTACTGCTGATCCTG
* * * *
17669756 CTACAGCAACCCTCAGTCCGGTCTGATCTTAGGCTGGGAATGAACTCTGTATGC
131 CTACAGCAACCCTCAATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGC
*
17669810 TTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGCGTACAGGCA-CTCAAC
1 TTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGT-CAGGCAGCTCAAC
* * * * ** * * * *
17669874 CGGCCGGAGAGGCAGAATGCGCAAGCCGTGGCCCGATTCGGTCCCCTCTACGTGCTG-TCGATCT
65 CGGCCGGAGAAGCAGAATGCGCAAGCCGAGGACAGACCCAGTCCCCCCTACGTACTGCT-GATCC
* ** * *
17669938 TGCTGTC-GCAACCCTCAATTTGGTCCGATCTTAGATTAGGATTGAACTCTGTA
129 TGCT-ACAGCAACCCTCAATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTA
17669991 CACCTAAGTC
Statistics
Matches: 149, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 1 0.01
184 144 0.97
185 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTCAGGCAGCTCAACC
GGCCGGAGAAGCAGAATGCGCAAGCCGAGGACAGACCCAGTCCCCCCTACGTACTGCTGATCCTG
CTACAGCAACCCTCAATCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGC
Found at i:17670156 original size:159 final size:159
Alignment explanation
Indices: 17669993--17670562 Score: 507
Period size: 159 Copynumber: 3.6 Consensus size: 159
17669983 ACTCTGTACA
* * * *
17669993 CCTAAGTCAACCCATGAAAAGAGCATGCGGGCGCTGAGCCGA-CCGGAGAGGTATAATGCGCAAG
1 CCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTGAG-CGAGCCGGAGAGGCAGAATGCGCAAG
* * * * * *
17670057 CCGAGGATCGGCCCGCTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCTGACT
65 TCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACT
17670122 AGGGCTTAGACATGGAATGAACTCCCTATG
130 AGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * * *
17670152 CCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCTAGTCGGAGAGGCAGAATGCGCTAGT
1 CCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTGAGCGAGCCGGAGAGGCAGAATGCGCAAGT
* * * * * * * * * * *
17670217 TGGGGACCGACTCGGT-CCCCTCTGTGTGTTGTCC-ATCCTGC-GATCGCAACCCTCGGTCCGAT
66 CGGGGATCGGCCCGATCCCCCTCTGCGTGCTG-CCGGTCCCGCTG-CCACAACCCTCGGTCCGA-
* * * *
17670279 CCTA--TCTTAGAC-TGGGAATAAACTCCGTGTG
128 -CTAGGGCTTAGACAT-GGAATGAACTCCCTATG
* * * * *
17670310 CCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCGA-CCGGAGAGGCATAATGCGCAAG
1 CCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTGAG-CGAGCCGGAGAGGCAGAATGCGCAAG
* * * * * * *
17670374 TCGGGGTTCAGCTCGATCCCCCTCTACGTGCTGTCGGTCTCGCTGCCATAACCCTCGGTCCGACT
65 TCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACT
* *
17670439 GGGGCTTAGACATGGAATGAACTCGCTATG
130 AGGGCTTAGACATGGAATGAACTCCCTATG
* * * * *
17670469 CCTAAGCCAACCCA-TAAAATTG-GCATGCGGGTGCTAAGCTAGCCGGAGAGGCAGAATGCGTAA
1 CCTAAGCCAACCCACGAAAA--GAGCATGCGGGCGCTGAGCGAGCCGGAGAGGCAGAATGCGCAA
*
17670532 GTC-GGGATCGGCCCAATCCCCC-CTGCGTGCT
64 GTCGGGGATCGGCCCGATCCCCCTCTGCGTGCT
17670563 ACCGAACCTT
Statistics
Matches: 318, Mismatches: 77, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
157 12 0.04
158 138 0.43
159 162 0.51
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
CCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTGAGCGAGCCGGAGAGGCAGAATGCGCAAGT
CGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTA
GGGCTTAGACATGGAATGAACTCCCTATG
Found at i:17670257 original size:501 final size:502
Alignment explanation
Indices: 17669281--17670306 Score: 1222
Period size: 501 Copynumber: 2.0 Consensus size: 502
17669271 CACGTCCGAC
* * *
17669281 CTTAGACTAGGAACGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
* * * * * *
17669346 ACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAAAGGTAGAATACGTAAGCCAGGGACCGATCC
66 ACGAAACGAGCGTACAGGCACTCAACCAACCGGAAAGGCAGAATACGCAAGCCAGGGACCGATCC
* * *
17669411 GATCCCCCCTAGCGTGCTATCGATCCTGCTGCCATAACCTTCAGTCCGATCCGATCTTAGACAGG
131 GATCCCCCCTAGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCGATCCGATCTTAGACAGG
** * * * * * *
17669476 GAATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGTTCGAATGCTGAACCAGTCAGAGA
196 GAATGAACTCCGTACACCTAAGTCAACCCATGAAAAGAGCATGCGAACGCTGAACCAGCCAGAGA
* * * *
17669541 GGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGTTGCCGGTCCCGCTGCAACA
261 GGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCAACA
* * * *
17669606 ACCCTCGGTCCGACTGGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
326 ACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * *
17669671 GAGCGTGTGGGAGCTCAGTCGGTCGGAGAAGCAGAATGCGCAAGTCGAGGATAGACCCAGTCCCC
391 GAGCGTGCGGGAGCTCAGTCAGTCGGAGAAGCAGAATGCGCAAGTCGAGGACAGACCCAGTCCCC
* * *
17669736 CCTACGTACTGCTGATCCTGCTA-CAGCAACCCTCAGTCCGGT-CTGAT
456 CCTACGTACTGCTCATCCTGCGATC-GCAACCCTCAGTCCGATCCT-AT
* *
17669783 CTTAGGCTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
* ** * * * *
17669848 ATGAAACGAGCGTACAGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCC-GTGGCCCGATT
66 ACGAAACGAGCGTACAGGCACTCAACCAACCGGAAAGGCAGAATACGCAAGCCAG-GGACCGATC
* * * * * * ** * *
17669912 CGGTCCCCTCTA-CGTGCTGTCGATCTTGCTGTCGCAACCCTCAATTTGGTCCGATCTTAGATTA
130 CGATCCCCCCTAGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCGATCCGATCTTAGA-CA
* * ** * *
17669976 -GGATTGAACTCTGTACACCTAAGTCAACCCATGAAAAGAGCATGCGGGCGCTGAGCC-GACCGG
194 GGGAATGAACTCCGTACACCTAAGTCAACCCATGAAAAGAGCATGCGAACGCTGAACCAG-CCAG
* * *
17670039 AGAGGTATAATGCGCAAGCCGAGGATCGGCCCGCTCCCCCTCTGCATGCTGCCGGTCCCGCTGCC
258 AGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCA
*
17670104 ACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
323 ACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * * * *
17670169 AACGGGCGTGCGGGCGCTCAG-CTAGTCGGAGAGGCAGAATGCGCTAGTTGGGGACCGACTCGGT
388 AACGAGCGTGCGGGAGCTCAGTC-AGTCGGAGAAGCAGAATGCGCAAGTCGAGGACAGACCCAGT
* ** ** *
17670233 CCCCTCTGTGTGTTG-TCCATCCTGCGATCGCAACCCTCGGTCCGATCCTAT
452 CCCCCCTACGTACTGCT-CATCCTGCGATCGCAACCCTCAGTCCGATCCTAT
*
17670284 CTTAGACTGGGAATAAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
17670307 GTGCCTAAGT
Statistics
Matches: 436, Mismatches: 81, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
500 3 0.01
501 310 0.71
502 123 0.28
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (502 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCC
ACGAAACGAGCGTACAGGCACTCAACCAACCGGAAAGGCAGAATACGCAAGCCAGGGACCGATCC
GATCCCCCCTAGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCGATCCGATCTTAGACAGG
GAATGAACTCCGTACACCTAAGTCAACCCATGAAAAGAGCATGCGAACGCTGAACCAGCCAGAGA
GGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTGCAACA
ACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGAGCTCAGTCAGTCGGAGAAGCAGAATGCGCAAGTCGAGGACAGACCCAGTCCCC
CCTACGTACTGCTCATCCTGCGATCGCAACCCTCAGTCCGATCCTAT
Found at i:17670396 original size:317 final size:317
Alignment explanation
Indices: 17669808--17670537 Score: 868
Period size: 317 Copynumber: 2.3 Consensus size: 317
17669798 AACTCTGTAT
* * * * * * *
17669808 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCATGAAACGAGCGTACAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
** * * * * *
17669873 CCGGCCGGAGAGGCAGAATGCGCAAGCCGTGGCCCGATTCGGTCCCCTCTACGTGCTGTCGATCT
66 CTAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCTCTACGTGCTGTCCATCC
** * * * * *
17669938 TGCTGTCGCAACCCTCAATTTGGTCCGATCTTAGATTAGGATTGAACTCTGTACACCTAAGTCAA
131 TGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATAAACTCCGTACACCTAAGTCAA
* * *
17670003 CCCATGAAAAGAGCATGCGGGCGCTGAGCCGACCGGAGAGGTATAATGCGCAAGCCGAGGATCGG
196 CCCACGAAAAGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAG
* * *
17670068 CCCGCTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCTGACTAGG
261 CCCGATCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCGACTAGG
*
17670125 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * ** ** *
17670190 CTAGTCGGAGAGGCAGAATGCGCTAGTTGGGGACCGACTCGGTCCCCTCTGTGTGTTGTCCATCC
66 CTAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCTCTACGTGCTGTCCATCC
** * * ***
17670255 TGC-GATCGCAACCCTCGGTCCGATCCTATCTTAGACTGGGAATAAACTCCGTGTGCCTAAGTCA
131 TGCTG-TCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATAAACTCCGTACACCTAAGTCA
* * * * * *
17670319 ACCCACGAAATGAGCGTTCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGTTCA
195 ACCCACGAAAAGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCA
* * * * * * *
17670384 GCTCGATCCCCCTCTACGTGCTGTCGGTCTCGCTGCCATAACCCTCGGTCCGACTGGG
260 GCCCGATCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCGACTAGG
* * ** * * *
17670442 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCATAAAATTGGCATGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* *
17670507 CTAGCCGGAGAGGCAGAATGCGTAAGTCGGG
66 CTAGCCGGAGAGGCAGAATGCGCAAGCCGGG
17670538 ATCGGCCCAA
Statistics
Matches: 345, Mismatches: 67, Indels: 2
0.83 0.16 0.00
Matches are distributed among these distances:
316 1 0.00
317 344 1.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CTAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCTCTACGTGCTGTCCATCC
TGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATAAACTCCGTACACCTAAGTCAA
CCCACGAAAAGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAG
CCCGATCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCGACTAGG
Found at i:17671329 original size:26 final size:26
Alignment explanation
Indices: 17671300--17671352 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17671290 CTGATCCGAT
*
17671300 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
17671326 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17671352 C
1 C
17671353 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17672572 original size:26 final size:26
Alignment explanation
Indices: 17672536--17672588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17672526 ATGATTCGAT
17672536 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17672562 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17672588 C
1 C
17672589 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17673126 original size:26 final size:26
Alignment explanation
Indices: 17673085--17673137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17673075 TCAGTTTGAT
* *
17673085 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17673111 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17673137 C
1 C
17673138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17673346 original size:340 final size:340
Alignment explanation
Indices: 17672713--17673367 Score: 730
Period size: 340 Copynumber: 1.9 Consensus size: 340
17672703 CCGCTGCTGG
* * *
17672713 TCCTAGTGCCGTAACCCTCAGTCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ** *
17672778 ATGGTATGAACTCCATATGCCTAAGCCAACCTACGAAACGAGCGTGTTGGTGCTCAGCCGACTGG
66 ATGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTCG
* * * * * *
17672843 AGAGGCAAAATGTACAAGCGAGGACCATCCCGGTCCCCCTTACGTGCTGTCAGTCTCGCTACCAC
131 AGAGGCAAAATGCACAAGCGAGGACCAGCCCGATCCCCCCTACGTCCTATCAGTCTCGCTACCAC
* **
17672908 AACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
196 AACCCTCGATCCAGTTGGAGCTTAGACATGGAATGAACTCCCTATGCAGAAGCCAACCCACGAAA
* * * * * *
17672973 CGGGCGTACGGGCACTCAATCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTTGATTCC
261 CGAGCGTACGGGCACTCAAGCCACCGAAGAGGCAAAATGCGCAAGTCGAGGATCGACTTGATTCC
17673038 CCTGTGTGCTGCCGA
326 CCTGTGTGCTGCCGA
* * ** * *
17673053 TCCTACTGCCGTAACCCTCGGTTCAGTTTGATCTTAGACTTGGAATGAACTCTGTATGCTTAGAC
1 TCCTACTGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * *
17673118 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTTAGTCG-GTC
66 AT-GGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTC
* * * * * * *
17673181 G-GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTGCGTCCTATC-GATCTTGCTA
130 GAGAGGCAAAATGCACAAG-CGAGGACCAGCCCGATCCCC-CCTACGTCCTATCAG-TCTCGCTA
* * * * * *
17673244 CCGCAACCCTCGATCC-GATTTGATCTTAGAC-TGGGAATGAACTCCGTATGTAGAAGTCAACCC
192 CCACAACCCTCGATCCAG-TTGGAGCTTAGACAT-GGAATGAACTCCCTATGCAGAAGCCAACCC
* * *
17673307 ATGAAACGAGCGTACGGGCACT-GAGCCACCCGAAGAGGCAAAATGTGCAAGTCGAGGATCG
255 ACGAAACGAGCGTACGGGCACTCAAGCCA-CCGAAGAGGCAAAATGCGCAAGTCGAGGATCG
17673368 GCCCGGTCCC
Statistics
Matches: 256, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
338 14 0.05
339 24 0.09
340 218 0.85
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (340 bp):
TCCTACTGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTCG
AGAGGCAAAATGCACAAGCGAGGACCAGCCCGATCCCCCCTACGTCCTATCAGTCTCGCTACCAC
AACCCTCGATCCAGTTGGAGCTTAGACATGGAATGAACTCCCTATGCAGAAGCCAACCCACGAAA
CGAGCGTACGGGCACTCAAGCCACCGAAGAGGCAAAATGCGCAAGTCGAGGATCGACTTGATTCC
CCTGTGTGCTGCCGA
Found at i:17673610 original size:158 final size:158
Alignment explanation
Indices: 17673182--17673610 Score: 420
Period size: 158 Copynumber: 2.7 Consensus size: 158
17673172 TAGTCGGTCG
* * * *
17673182 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTGCGTCCTATCGATCTTGCTACCG
1 GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCC-CCTGCGTGCTACCGATCCTGCTACCG
* * * *
17673247 CAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGTAGAAGTCAACCCATGAA
65 CAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAGAAGTCAACCCATGAA
*
17673312 ACGAGCGTACGGGCACTGAGCCACCCGAA
130 ACGAGCGTACGGGCACTGAGCCACACGAA
* * * * * * ** *
17673341 GAGGCAAAATGTGCAAG-TCGAGGATCGGCCCGGTCCCCCTCTGCGTGCT-GCGGTCCCACTGCC
1 GAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGATCCCCC-CTGCGTGCTACCGATCCTGCTACC
* ** * * * **
17673404 ACAACCCTCGATCATG-CTAGGGT-TTAGACAAGGAATGAACTCCCTATGCCTAA-TCCAACCCA
64 GCAACCCTCGATCCGGTCT--GATCTTAGACTAGGAATGAACTCCGTATGCAGAAGT-CAACCCA
* * * * * *
17673466 TGAAACGGGCGTACGGGCGCTTAGCTAGACGGA
126 TGAAACGAGCGTACGGGCACTGAGCCACACGAA
* * *
17673499 GAGGTAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGT
1 GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGC
* *
17673564 AACTCTCTG-TCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGC
66 AACCCTC-GATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
17673611 TTAGACTGGG
Statistics
Matches: 209, Mismatches: 51, Indels: 21
0.74 0.18 0.07
Matches are distributed among these distances:
157 13 0.06
158 150 0.72
159 46 0.22
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGC
AACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAGAAGTCAACCCATGAAA
CGAGCGTACGGGCACTGAGCCACACGAA
Found at i:17673625 original size:26 final size:26
Alignment explanation
Indices: 17673584--17673636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17673574 CCGGTCTGAT
*
17673584 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17673610 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17673636 C
1 C
17673637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17674253 original size:698 final size:683
Alignment explanation
Indices: 17673110--17674363 Score: 1537
Period size: 698 Copynumber: 1.8 Consensus size: 683
17673100 AACTCTGTAT
* * * ** * *
17673110 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCAACGAAACAAGTGTGCGGGTGCTCAA
* * * *
17673175 TCGGTCGGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCCTGCGTCCTATCGATCTT
66 TCGGTCGGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCTCCTCCGTCCTATCGATCTT
* ** *
17673240 GCTACCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCCGTATGTAGAAGTCAAC
131 GCTACCGCAACCCTCGATCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCAGAAGTCAAC
* * * * *
17673305 CCATGAAACGAGCGTACGGGCACTGAGCCACCCGAAGAGGCAAAATGTGCAAGTCGAGGATCGGC
196 CCACGAAACGAGCGTACGGGCACTAAGCCACCCGAAGAGGCAAAATGCGCAAGCCGAGGATCGAC
* * * *
17673370 CCGGTCCCCCTCTGCGTGCTGCGGTCCCACTGCCACAACCCTCGATCATGCTAGGGTTTAGACAA
261 CCGGTCCCCCTCTGCGGGCTGCGATCCCACTGCCACAACCCTCGATCAGGCTAGGGCTTAGACAA
* * * *
17673435 GGAATGAACTCCCTATGCCTAATCCAACCCATGAAACGGGCGTACGGGCGCTTAGCTAGACGGAG
326 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAACCAGACGGAG
* * * * * **
17673500 AGGTAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGTA
391 AGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACCACA
* * * *
17673565 ACTCTCTG-TCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
456 ACCCT-TGATCCGGTCTGATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGGATGAACT
*
17673629 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACACTCAGTCAGTCGAAGTGGTCGACTG
520 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCAGTCAGTCGAAGTGGTCGACTG
17673694 AAGAGGTGTAATGCGCAAGCCGAGGATTAGCCCGATCTCCTTCTATGTGCTGCTAATTCTGGTGT
585 AAGAGGTGTAATGCGCAAGCCGAGGATTAGCCCGATCTCCTTCTATGTGCTGCTAATTCTGGTGT
17673759 CAGTCCTGCTGCCATAACCCTCGATCCGACTGGG
650 CAGTCCTGCTGCCATAACCCTCGATCCGACTGGG
*
17673793 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGACAACCAACGAAACAAGTGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGACAACCAACGAAACAAGTGTGCGGGTGCTCA
17673857 ATCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCTCCACTTGCATGCTACCGAT
65 ATCGGTC-G-GAGGCAGAATGCACAAGCCAGGGATCGACCCGATC-CC-C-T-C---CT-CCG-T
* * * ** * * **
17673922 CCTGCTGTTGGTCTTGCTATTGCAACCCTCGATCTGGTCTGATCTTAGACTACGAATGAACTTTG
119 -C--CTATCGATCTTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTACGAATGAACTCCG
** * * * ** * *
17673987 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTAAGTCGGCCGGAGAGGCATAATGCGC
181 TATGCAGAAGTCAACCCACGAAACGAGCGTACGGGCACTAAGCCACCCGAAGAGGCAAAATGCGC
* * * *** ** * *
17674052 AAGCC-AGGGATCTATCTGGTCCTTTTCTGCGGGCTGTCGATCCTGCTGCCACAACCCTCGGTCC
246 AAGCCGA-GGATCGACCCGGTCCCCCTCTGCGGGCTG-CGATCCCACTGCCACAACCCTCGATCA
* * * * * *
17674116 GGCTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTGCTGG
309 GGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGG
* * *
17674181 TGCTCAACCA-ATCGGAGAGGCAGAATGCGCAAG-TCGAGGATCGACTCGATCCGCCCTACGTGC
374 CGCTCAACCAGA-CGGAGAGGCAGAATGCGCAAGCT-GAGGATCGACCCGATCCCCCCTACGTGC
** * *
17674244 TGTCGATCCTGCTACCACAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATAAGC
437 TACCGATCCTGCTACCACAACCCTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCATAAGC
* *
17674309 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGG
502 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
17674364 GCGCTCAGCC
Statistics
Matches: 467, Mismatches: 84, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
683 61 0.13
684 2 0.00
685 32 0.07
686 2 0.00
687 1 0.00
688 1 0.00
689 1 0.00
692 2 0.00
693 2 0.00
694 1 0.00
695 1 0.00
696 1 0.00
697 130 0.28
698 230 0.49
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (683 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCAACGAAACAAGTGTGCGGGTGCTCAA
TCGGTCGGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCTCCTCCGTCCTATCGATCTT
GCTACCGCAACCCTCGATCCGATCTGATCTTAGACTACGAATGAACTCCGTATGCAGAAGTCAAC
CCACGAAACGAGCGTACGGGCACTAAGCCACCCGAAGAGGCAAAATGCGCAAGCCGAGGATCGAC
CCGGTCCCCCTCTGCGGGCTGCGATCCCACTGCCACAACCCTCGATCAGGCTAGGGCTTAGACAA
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAACCAGACGGAG
AGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACCACA
ACCCTTGATCCGGTCTGATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTGGGGATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACACTCAGTCAGTCGAAGTGGTCGACTGA
AGAGGTGTAATGCGCAAGCCGAGGATTAGCCCGATCTCCTTCTATGTGCTGCTAATTCTGGTGTC
AGTCCTGCTGCCATAACCCTCGATCCGACTGGG
Found at i:17675044 original size:26 final size:26
Alignment explanation
Indices: 17675006--17675055 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17674996 GGATCAAAAT
17675006 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
17675032 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATAAACTCCGTA
17675056 CGCCTAAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17675535 original size:26 final size:26
Alignment explanation
Indices: 17675506--17675558 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17675496 CTGGTTTGAT
*
17675506 CTTAGAATGGCAATGAACTCTGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
* **
17675532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
17675558 C
1 C
17675559 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGCAATGAACTCCGTATG
Found at i:17676394 original size:158 final size:154
Alignment explanation
Indices: 17675899--17676394 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 154
17675889 ACTCTATATG
*
17675899 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGC-AGACGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAG-CGCTCAG
* * * * * **
17675963 CCGATCGGAGATACAGAATACGCAAGTCAGGGATCGACCCGATTCCCCCTACGTGCTATCGATCC
65 CCGATCGAAGAGACAGAATGCGCAAG-CCGGGATCG--CCGA-TCCCCCTGCGTGCTGCCGATCC
* *
17676028 TGCTACCATAACCCTCGATCCGGTCTGAT
126 TGCTGCCATAACCCTCGGTCCGGTCTGAT
** * ** * * *
17676057 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGTTAAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * * * * * * **
17676121 CCGACCGAAGAGCCATAATGCG-AAGCCGAGGGAT--CCGGTCCCTCTGCGTGCTGCTGGTCCCA
65 CCGATCGAAGAGACAGAATGCGCAAGCC--GGGATCGCCGATCCCCCTGCGTGCTGCCGATCCTG
* * **
17676183 CTGCCACAACCCTCAGTCCGG-CTGGGG
128 CTGCCATAACCCTCGGTCCGGTCT-GAT
* * *
17676210 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGTGCTCAG
1 CTTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
** * *
17676274 CCGATCGAAGAGGTAGATTGCGCAAGCCGGAGATCGGCCTGATCCCCCCTGCGTGCTGCCGATCT
65 CCGATCGAAGAGACAGAATGCGCAAGCCGG-GATC-GCC-GAT-CCCCCTGCGTGCTGCCGATCC
*
17676339 TGCTGCCGTAACCCTCGGTCCGGTCTGAT
126 TGCTGCCATAACCCTCGGTCCGGTCTGAT
17676368 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
17676395 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 58, Indels: 34
0.74 0.16 0.10
Matches are distributed among these distances:
152 4 0.02
153 105 0.40
154 9 0.03
156 3 0.01
157 8 0.03
158 131 0.50
159 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
CGATCGAAGAGACAGAATGCGCAAGCCGGGATCGCCGATCCCCCTGCGTGCTGCCGATCCTGCTG
CCATAACCCTCGGTCCGGTCTGAT
Found at i:17676409 original size:26 final size:26
Alignment explanation
Indices: 17676368--17676420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17676358 CCGGTCTGAT
*
17676368 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
* *
17676394 CTTAGACTGGGGATGAAATCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
17676420 C
1 C
17676421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCATATG
Found at i:17678021 original size:26 final size:26
Alignment explanation
Indices: 17677970--17678022 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17677960 CCAGTCCAAT
* *
17677970 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17677996 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17678022 C
1 C
17678023 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17684763 original size:26 final size:26
Alignment explanation
Indices: 17684725--17684777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17684715 GGCTCAAAAT
*
17684725 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17684751 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
17684777 C
1 C
17684778 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17686606 original size:26 final size:26
Alignment explanation
Indices: 17686568--17686620 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17686558 GGCTCAAAAT
*
17686568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17686594 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
17686620 C
1 C
17686621 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17686791 original size:26 final size:26
Alignment explanation
Indices: 17686762--17686813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17686752 CCGGTCCAAT
17686762 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17686788 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17686814 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17687907 original size:156 final size:156
Alignment explanation
Indices: 17687626--17687907 Score: 368
Period size: 156 Copynumber: 1.8 Consensus size: 156
17687616 GCTTAGAGAT
* * * *
17687626 GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCAGAG
1 GGAATGAACTCCATACGACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAGAG
* * ** * *
17687691 AGGTAGAATGCGCAACCTGGGGATCGACTCGGTCCCCCCCTTTATGCTGTTGATCCTACTGTCAC
66 AGGTAGAATGCGCAACCTAGGGATCGACTCGATCCCCCCCTACATGCTATCGATCCTACTGTCAC
17687756 CTTCAGTTTGGTCCGATCTTAGACTG
131 CTTCAGTTTGGTCCGATCTTAGACTG
* * *
17687782 GGAATGAACTCCATATGACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTTAGAG
1 GGAATGAACTCCATACGACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAGAG
** ** * * *
17687847 AGGTAGAATGCGCAAGCC-AGGGATCGGTTCGATCCCCTTCTACGTGCTATCGGTCTTACTG
66 AGGTAGAATGCGCAA-CCTAGGGATCGACTCGATCCCCCCCTACATGCTATCGATCCTACTG
17687908 CCACAACCCT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
156 103 0.98
157 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
GGAATGAACTCCATACGACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAGAG
AGGTAGAATGCGCAACCTAGGGATCGACTCGATCCCCCCCTACATGCTATCGATCCTACTGTCAC
CTTCAGTTTGGTCCGATCTTAGACTG
Found at i:17688138 original size:25 final size:26
Alignment explanation
Indices: 17688089--17688140 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
17688079 CCGGTCTGAT
*
17688089 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATAAACTCCGTATG
* *
17688115 CTTAGACTAG-GATAAACTTCGTATG
1 CTTAGACTAGAAATAAACTCCGTATG
17688140 C
1 C
17688141 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGAAATAAACTCCGTATG
Found at i:17690872 original size:26 final size:26
Alignment explanation
Indices: 17690843--17690895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17690833 CCGGTCCGAT
17690843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17690869 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17690895 C
1 C
17690896 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17697914 original size:26 final size:26
Alignment explanation
Indices: 17697876--17697928 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17697866 GGCTCAAAAT
*
17697876 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17697902 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17697928 C
1 C
17697929 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17698200 original size:158 final size:157
Alignment explanation
Indices: 17697902--17698306 Score: 352
Period size: 158 Copynumber: 2.6 Consensus size: 157
17697892 ACTCTGTATG
*
17697902 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
* * * *
17697967 AGACGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCTCTGTATGCTATCGATCCTG
66 AGACGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGTATGCTATCGATCCCG
* *
17698032 CTGCTGCAACCATCGGTCTGGTCCAAT
131 CTACTACAACCATCGGTCTGGTCCAAT
* * * * * * *
17698059 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGT-GCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATAC-GGTCACTCA
* * ** * * *
17698122 GCTAGCCGAAGAGGCATAATGCGCAAG-CAGGAGATCGGTCTAATCCCCTCTGTGTGCTA-CTGG
64 GC-AGACGAAGAGGCAGAATGCGCAAGCCAGG-GATCGACCCAATCCCCTCTGTATGCTATC-GA
* * * * ****
17698185 TCCCGCTACTACAACCCTCAGTTCAGCT-GGGG
126 TCCCGCTACTACAACCATC-GGTCTGGTCCAAT
* * * * * * *
17698217 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
* * * *
17698282 CGACCAGAGAGGTAGAATGTGCAAG
66 AGACGA-AGAGGCAGAATGCGCAAG
17698307 TTGGGGATTG
Statistics
Matches: 194, Mismatches: 45, Indels: 17
0.76 0.18 0.07
Matches are distributed among these distances:
156 1 0.01
157 61 0.31
158 126 0.65
159 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
AGACGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCTCTGTATGCTATCGATCCCG
CTACTACAACCATCGGTCTGGTCCAAT
Found at i:17698405 original size:26 final size:26
Alignment explanation
Indices: 17698368--17698427 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
17698358 CCTTGGTCCG
*
17698368 ATCCG-AT-CTTAGATTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
17698392 ATCCGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
17698418 CTTCGTATGC
1 ATCCGTATGC
17698428 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 23 0.77
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:17699556 original size:329 final size:329
Alignment explanation
Indices: 17698901--17699604 Score: 872
Period size: 329 Copynumber: 2.1 Consensus size: 329
17698891 TCAATCCTAT
* * *
17698901 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACAC
1 TGCCTCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAC
* * *
17698966 ACGAAACGAGCGTACGGGCTCTGACCCGATCGGAGAGGCATAATGCGTAAATCACGGATCGACCC
66 ACGAAACAAGCGTACGGGCTCTGACCCGACCGGAGAGGCATAATGCGCAAATCACGGATCGACCC
*
17699031 GGTCCCCCTCTCCATGCTGCCGGTCCCACTGCCACAACCCTCAGTACGGCTAGGCCTTAGAAAAG
131 GGTCCCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTACGGCTAGGCCTTAGAAAAG
* * * * * *
17699096 GAATGAACTTCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCAACCGGTCGGAGT
196 AAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACCAGTCAGAGA
* * * * *
17699161 GGCAGAATGCACAAGTCAGGGATCGACCTGATTCCCCATGCATGCTACCGATCTTTTTACTGGTC
261 GGCAGAATGCACAAGCCAGGGATCGACCTGATCCCCCATACATGCTACCGATCCTGTTACTGGTC
17699226 CTGC
326 CTGC
* * *
17699230 TGTCGT-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 TG-CCTCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACA
* ** * * * ** *
17699294 CATGAAACAAGCGTGTGGGCTCTGAGCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGAAT-GGC
65 CACGAAACAAGCGTACGGGCTCTGACCCGACCGGAGAGGCATAATGCGCAAATCACGG-ATCGAC
* * * * * ** * * *
17699358 TCGGTCCCTCTCTACGTGCTGCCGGTCCCGCTGCCACAATCCTTGGTCCGGCTAGGGCTTAGACA
129 CCGGTCCCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTACGGCTAGGCCTTAGAAA
* *
17699423 TGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCAGTCAGA
194 AGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACCAGTCAGA
* * * * * * ** **
17699488 GAGGTAGAATGCACAAGCCGGGGATCGACTTGGTCCCCCCTACGTGCTGTCGATCCTGTTGTTGG
259 GAGGCAGAATGCACAAGCCAGGGATCGACCTGATCCCCCATACATGCTACCGATCCTGTTACTGG
17699553 TCCTGC
324 TCCTGC
* * * *
17699559 TGCCTCAACCCTCGATCTGATTTGATCTTAGAATGGGAATGAACTC
1 TGCCTCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
17699605 TGTACACTTA
Statistics
Matches: 314, Mismatches: 58, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
328 2 0.01
329 309 0.98
330 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (329 bp):
TGCCTCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAC
ACGAAACAAGCGTACGGGCTCTGACCCGACCGGAGAGGCATAATGCGCAAATCACGGATCGACCC
GGTCCCCCTCTACATGCTGCCGGTCCCACTGCCACAACCCTCAGTACGGCTAGGCCTTAGAAAAG
AAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAACCAGTCAGAGA
GGCAGAATGCACAAGCCAGGGATCGACCTGATCCCCCATACATGCTACCGATCCTGTTACTGGTC
CTGC
Found at i:17699904 original size:159 final size:157
Alignment explanation
Indices: 17699611--17700113 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 157
17699601 ACTCTGTACA
** *
17699611 CTTAGACATGGAATGAACTAAGTATGCCTAA-TCCAACCCATGAAACGAGCGTGCGAGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17699675 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATC-CCCCCTTGCGTGCTATCGAT
65 TCG--CCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTTCCCCTTGCGTGCTACCGAT
* *
17699739 CTTGCTGCCGCAGCCCTTGGTTCGATCTGAT
128 CCTGCTGCCGCAACCCTTGGTTCG-TCTGAT
* * * * *
17699770 CTTAGAC-TGCGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
17699834 CCAGCCAGAGAGGCATAATGCGCAAGCCGGGGATCCACCGGGTCTTCCTC-TGCGTGCTGCC-AG
65 TC-GCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTTCCCCTTGCGTGCTACCGA-
* * * **
17699897 TCCTGCTGCCACAACCCTT-GATCTGGCTGGGG
127 TCCTGCTGCCGCAACCCTTGGTTC-GTCT-GAT
* * * *
17699929 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * *
17699994 CGGCCGAAAAGGCAGAATGCGCAAGCTGGTGATCGACCCAG--TTCCCCTTGCGTGCTACCGATC
66 C-GCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTTCCCCTTGCGTGCTACCGATC
* * * *
17700057 CTGCTACAGCAACCCTCGGTTCGGTCCGAT
129 CTGCTGCCGCAACCCTTGGTTC-GTCTGAT
17700087 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17700114 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 6 0.02
158 60 0.22
159 202 0.73
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCTTCCCCTTGCGTGCTACCGATCCT
GCTGCCGCAACCCTTGGTTCGTCTGAT
Found at i:17700116 original size:26 final size:26
Alignment explanation
Indices: 17700087--17700139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17700077 TCGGTCCGAT
17700087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17700113 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17700139 C
1 C
17700140 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17700848 original size:26 final size:26
Alignment explanation
Indices: 17700810--17700862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17700800 GGCTCAAAAT
17700810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17700836 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17700862 C
1 C
17700863 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17701226 original size:159 final size:157
Alignment explanation
Indices: 17700835--17701250 Score: 439
Period size: 159 Copynumber: 2.6 Consensus size: 157
17700825 AACTCCGTAT
* * *
17700835 GCTTAGACATGGAATGAACTCTGTATGCCTAATCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
17700900 CCAATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCGACGTGCTGTCGATCTT
66 CCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCAGGTCCCCCCGACGTGCTGCCGATCTT
* * * * *
17700965 GCTATCCTAGCCTTTGGTCTAGTCTGA
131 GCTACCCAACCCTTCGGTCTAGACTGA
* * * *
17700992 TCTTAGAC-TAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
17701056 GCCG-GCTGGAGAGGCATAATGCGCAAGTTGGGGATTGGCAGGTCCCCTTCTG-TGTGCTGCCGG
65 GCCGATC-GGAGAGGCAAAATGCGCAAGTCGGGGATCGGCAGGTCCCC--CCGACGTGCTGCCGA
*
17701119 TGC-TGCTACCACAACCCTTCGGTCT-GACTGGG
127 T-CTTGCTACC-CAACCCTTCGGTCTAGACT-GA
* * *
17701151 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-TAGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * *
17701215 GTCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATC
65 GCCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATC
17701251 AGCCCAGTCC
Statistics
Matches: 211, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 93 0.44
158 19 0.09
159 95 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCAGGTCCCCCCGACGTGCTGCCGATCTT
GCTACCCAACCCTTCGGTCTAGACTGA
Found at i:17701354 original size:26 final size:26
Alignment explanation
Indices: 17701310--17701362 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17701300 CTGGTCCGAT
* *
17701310 CTTAGATTGGGAATTAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
17701336 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17701362 C
1 C
17701363 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17702070 original size:26 final size:26
Alignment explanation
Indices: 17702032--17702084 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702022 GGCACAAAAT
17702032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17702058 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17702084 C
1 C
17702085 CTAATCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17702370 original size:157 final size:157
Alignment explanation
Indices: 17702058--17702557 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
17702048 ACTCCGTATG
* * * *
17702058 CTTAGACATGGAATGAACTCCGTATGCCTAA-TCCAACCCACAAAACAAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGT-CAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
17702122 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTGTCAATCT
65 CCGGACGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCC
* *
17702187 TGCTGCCATAGCCCTCAGTCCAGGCTGAT
130 TGCTGCCACAACCCTCAGT-CAGGCTGAT
* * *
17702216 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACACACGAAACGAGTGT-CGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** *
17702279 CCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGGTC
65 CCGGACGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCAGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
17702344 CTGCTGCCACAACCTTCCGTCTGGCTGGGG
129 CTGCTGCCACAACCCTCAGTCAGGCT-GAT
* * * * * *
17702374 CTCAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
17702438 C-GACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATACCCCCTACGTGCTGTCGATCC
66 CGGAC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
17702502 TGCTACCGCAACCCTCAGTCCGTTCTGAT
130 TGCTGCCACAACCCTCAGTCAG-GCTGAT
* *
17702531 CTTAGA-TTGGGAATGAACTATGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
17702558 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 132 0.48
158 142 0.51
159 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGACGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCAGGCTGAT
Found at i:17702581 original size:26 final size:26
Alignment explanation
Indices: 17702531--17702583 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17702521 CCGTTCTGAT
* *
17702531 CTTAGATTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
17702557 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17702583 C
1 C
17702584 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:17703293 original size:26 final size:26
Alignment explanation
Indices: 17703255--17703307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17703245 GGCACAAAAT
*
17703255 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17703281 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17703307 C
1 C
17703308 CTAATCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17703603 original size:159 final size:158
Alignment explanation
Indices: 17703290--17703782 Score: 487
Period size: 159 Copynumber: 3.1 Consensus size: 158
17703280 GCTTAGACAT
* * * * * *
17703290 GGAATGAACTCCATATGCCTAA-TCTAACCCAGGAAACAAGCGTGCGGGCGCTCAGCCGGTCGAA
1 GGAATGAACTCCGTATGCCTAAGTCAAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTTGGA
* * * ** * * *
17703354 GAGGCAGAATGCGCAAGTCGAGGATCGGCCCA-GTCCCCCCCTGTGTGCTATCAATCTTGCTGCT
66 GAGGCAGAATGCGCAAGCCGAGGATC-GACCAGGT-CCCCCCTGCGTGCTGCCGATCCTGCTGCC
* * *
17703418 GTAGCCCTTGGTCCAGTCTGATCTTAGATTG
129 GCAACCCTCGGT-CAGTCTGATCTTAGATTG
* *
17703449 GGAATGAACTCCGTATGCCTAAGTC-AACCAACGAAACGAGCGTGCGGGCGCTGAGCCGGTTGGA
1 GGAATGAACTCCGTATGCCTAAGTCAAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTTGGA
* * * *
17703513 GAGGCATAATGCGCAAGCCGAGGATCGACCAGGTCCCCCTCTGCGTGCTGCCGGTCCTACTGCCA
66 GAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCC-CTGCGTGCTGCCGATCCTGCTGCCG
* * ** *
17703578 CAACCCTCGGTCTGGCTGGGGCTTAGACAT-
130 CAACCCTCGGTCAGTCT-GATCTTAGA-TTG
* * * * * * *
17703608 GGAATGAAGTCCCTATGCCTAAG-CAAACCCACGAAA-GGGCATACGGGCGCTCAGTCGGATGGA
1 GGAATGAACTCCGTATGCCTAAGTCAAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTTGGA
* * * *
17703671 GAGGCAGAATGTGCAAGCCGGGGATC-AGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCG
66 GAGGCAGAATGCGCAAGCCGAGGATCGA-CCAGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCG
* *
17703735 CAACCCTCGGTCCGATCTGATCTTATATTG
130 CAACCCTCGGTCAG-TCTGATCTTAGATTG
*
17703765 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
17703783 TTAAACTGGG
Statistics
Matches: 272, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 57 0.21
158 69 0.25
159 142 0.52
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGTCAAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTTGGA
GAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGC
AACCCTCGGTCAGTCTGATCTTAGATTG
Found at i:17704521 original size:26 final size:25
Alignment explanation
Indices: 17704483--17704534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
17704473 GGTACAAAAT
17704483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
17704509 CTTAGACAT-GGAATGAACTCGTATG
1 CTTAGAC-TGGGAATGAACTCGTATG
17704534 C
1 C
17704535 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:17704721 original size:157 final size:158
Alignment explanation
Indices: 17704509--17705008 Score: 555
Period size: 159 Copynumber: 3.2 Consensus size: 158
17704499 ACTCCGTATG
* *
17704509 CTTAGACATGGAATGAACT-CGTATGCCTAA-TCCAACCCACGAAACGAGCGTGCGGGCGGTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
17704572 CCGACCGGAAAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCT-TTGATCT
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTTGATCC
* * * *
17704636 TGCTACCGTATCCCTCGATCCGGTCTAAT
130 TGCTGCCGCAACCCTCGATCCGGTCTGAT
* *
17704665 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
17704729 CCGATCAGAGAGGCATAATGCACAAGCCGAGGATCGG-TCGGGTCCCCCTCTGTGTGCTGTCGGT
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTC-GGTCCCCC-CTGCGTGCTGTTGAT
* * * **
17704793 CCTGCTGCCACAACCCTCGGTCTGG-CTGGGG
128 CCTGCTGCCGCAACCCTCGATCCGGTCT-GAT
* * * * **
17704824 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGGGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17704889 CGGCTGGAGAGGTAAAATGCGTAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTTGATCCT
* * *
17704954 ACTGTCGCAACCCTCGATCCGGTCCGAT
131 GCTGCCGCAACCCTCGATCCGGTCTGAT
17704982 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
17705009 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 51, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
155 1 0.00
156 19 0.07
157 80 0.28
158 68 0.24
159 112 0.40
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTTGATCCT
GCTGCCGCAACCCTCGATCCGGTCTGAT
Found at i:17705011 original size:26 final size:26
Alignment explanation
Indices: 17704982--17705034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17704972 CCGGTCCGAT
17704982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17705008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17705034 C
1 C
17705035 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17705680 original size:26 final size:26
Alignment explanation
Indices: 17705642--17705694 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17705632 GGCTCAAAAT
17705642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17705668 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17705694 C
1 C
17705695 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17706093 original size:159 final size:158
Alignment explanation
Indices: 17705669--17706105 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
17705659 CTCCGTATGC
*
17705669 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
1 TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
** * * *
17705734 -GACCGAAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCT
66 GGA-CGAAGAGGCAGAATGCGTAAGCCGGGGATCAGGCCGGTCCCCCCTACGTGCTGTCGATCCC
* * * *** **
17705798 ACTACCGCAACCCTTGGTCTGGTCTGCTC
130 ACTACCACAACCCTCGATCTCAACTGCGA
** * * * * * * *
17705827 TTAGACTGGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACTAGCATGCGGGCATTGAGCC
1 TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * *
17705892 -GACTGAAGAGGCATAATGCGTAAGCCGAGGATC-GGCCTGGTCCCCCTCTGCGTGCTGTCGATC
66 GGAC-GAAGAGGCAGAATGCGTAAGCCGGGGATCAGGCC-GGTCCCCC-CTACGTGCTGTCGATC
* *
17705955 CCGCTACCACAACCCTCGATC-CAACTGGGGA
128 CCACTACCACAACCCTCGATCTCAACT-GCGA
* * *
17705986 TTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACG-GACGTGCGGGCACTCAAC
1 TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCAGC
* * * * * *
17706050 CGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCAGGTCGGTCCCCTCTACATGCT
65 CGGACGAAGAGGCAGAATGCGTAAGCCGGGGATCAGGCCGGTCCCCCCTACGTGCT
17706106 ACTAATCCTG
Statistics
Matches: 224, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 100 0.45
159 115 0.51
160 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
TTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GGACGAAGAGGCAGAATGCGTAAGCCGGGGATCAGGCCGGTCCCCCCTACGTGCTGTCGATCCCA
CTACCACAACCCTCGATCTCAACTGCGA
Found at i:17706564 original size:26 final size:26
Alignment explanation
Indices: 17706522--17706574 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17706512 CCGATCCGAT
17706522 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17706548 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17706574 C
1 C
17706575 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17706957 original size:159 final size:159
Alignment explanation
Indices: 17706547--17706968 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 159
17706537 AACTCCATAT
* * *
17706547 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCG-AGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTA-CGGGCGCTCA
* * * * * * *
17706611 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTCCCTACGTGCTATCGAT
**
17706676 CTTGCTACCACAACCCTCAGTCCGATCCAG
130 CCCGCTACCACAACCCTCAGTCCGATCCAG
* * * * * * * *
17706706 TCTTAGAC-TAGAAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
** * * *
17706770 GCCTTCCGGAGAGGCATAATGCGCAAGCTGAGGATCGAGCCAATCCCTCTCC-ACGTGCTATCGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTC-CCTACGTGCTATCGA
* * * **
17706834 TCCCGCTGCCACAACCCTCGGTCCG-GCTGGG
129 TCCCGCTACCACAACCCTCAGTCCGATC-CAG
* * *
17706865 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCTCGAAACG-GACGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCA
* *
17706929 ACCGACCGGAGAGGCAGAATACGCAAGCT-AGGGATCGACC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGA-GGATCGACC
17706969 TGATCCCCGC
Statistics
Matches: 209, Mismatches: 47, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
158 4 0.02
159 202 0.97
160 3 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTCCCTACGTGCTATCGATC
CCGCTACCACAACCCTCAGTCCGATCCAG
Found at i:17707075 original size:26 final size:26
Alignment explanation
Indices: 17707024--17707076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17707014 TTGGTCTGAT
* *
17707024 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17707050 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17707076 C
1 C
17707077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17707786 original size:26 final size:26
Alignment explanation
Indices: 17707744--17707796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17707734 GGCTCAAAAT
17707744 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17707770 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17707796 C
1 C
17707797 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17708179 original size:159 final size:159
Alignment explanation
Indices: 17707769--17708190 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 159
17707759 AACTCCATAT
* * *
17707769 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCG-AGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTA-CGGGCGCTCA
* * * * * * *
17707833 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTCCCTACGTGCTATCGAT
**
17707898 CTTGCTACCACAACCCTCAGTCCGATCCAG
130 CCCGCTACCACAACCCTCAGTCCGATCCAG
* * * * * * * *
17707928 TCTTAGAC-TAGAAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
** * * *
17707992 GCCTTCCGGAGAGGCATAATGCGCAAGCTGAGGATCGAGCCAATCCCTCTCC-ACGTGCTATCGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTC-CCTACGTGCTATCGA
* * * **
17708056 TCCCGCTGCCACAACCCTCGGTCCG-GCTGGG
129 TCCCGCTACCACAACCCTCAGTCCGATC-CAG
* * *
17708087 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCTCGAAACG-GACGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCA
* *
17708151 ACCGACCGGAGAGGCAGAATACGCAAGCT-AGGGATCGACC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGA-GGATCGACC
17708191 TGATCCCCGC
Statistics
Matches: 209, Mismatches: 47, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
158 4 0.02
159 202 0.97
160 3 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCAATCCCTCCCTACGTGCTATCGATC
CCGCTACCACAACCCTCAGTCCGATCCAG
Found at i:17708298 original size:26 final size:26
Alignment explanation
Indices: 17708247--17708299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17708237 TTGGTCTGAT
* *
17708247 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17708273 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17708299 C
1 C
17708300 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17709008 original size:26 final size:26
Alignment explanation
Indices: 17708966--17709018 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17708956 GGCTCAAAAT
17708966 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
17708992 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17709018 C
1 C
17709019 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17709223 original size:158 final size:157
Alignment explanation
Indices: 17708992--17709333 Score: 429
Period size: 158 Copynumber: 2.2 Consensus size: 157
17708982 ACTCCATATG
* * * * *
17708992 CTTAGAC-ATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
17709056 TCGATCGGAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCCTACTTGCTGTCAA-TC
65 CCGACCGGAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGAT-CCCCCTACATGCTGTCAATTC
* **
17709120 TTGCTGCCGCAACCCTCGGTCTGGTCCGAT
129 -TGCTGCCGCAACCCTCGATCCAGTCCGAT
*
17709150 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACG-GACGTGCGGGCGCTCAA
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAA
* * * * * **
17709214 CCGACCGGAGATGCAGAATGCGTAAGTCGGGGATCGGCCTGATCCCCCTGCATGCTGTTGATTCT
65 CCGACCGGAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTACATGCTGTCAATTCT
17709279 GCTGCCGCAACCCTCGATCCAGTCCGAT
130 GCTGCCGCAACCCTCGATCCAGTCCGAT
* *
17709307 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
17709334 TTAGACTGGG
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
157 66 0.42
158 92 0.58
159 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGGCAAAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTACATGCTGTCAATTCTG
CTGCCGCAACCCTCGATCCAGTCCGAT
Found at i:17710049 original size:26 final size:26
Alignment explanation
Indices: 17710013--17710065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17710003 CCAGTCTAAT
*
17710013 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17710039 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17710065 C
1 C
17710066 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17710170 original size:184 final size:183
Alignment explanation
Indices: 17709854--17710419 Score: 584
Period size: 196 Copynumber: 3.0 Consensus size: 183
17709844 TCTGGCTGGG
* **
17709854 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * ** * *
17709918 GCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATC-AGTTCGGTCCCCTCTGCATGC-AGCTGA
65 GTCGACCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCT-GGT-CCCTCTGCGTGCTA-CCGA
* *
17709981 TCTTGCTACCGCAACCCTCGGTCCAGTCTAATCTTAGACTAGGAATGAACTCTGTAT
127 TCTTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
* * *
17710038 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * *
17710102 GTCGACCGGAGAGGCTGAATGCGCAAGCCGGGGATCGACCTGGTCCTCTCTGTGTGCTACCAATC
65 GTCGACCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGGTCC-CTCTGCGTGCTACCGA--
* * * *
17710167 TTGCTGTTGGTCCTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
127 -T-C------T--TGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGT
17710232 AT
182 AT
* *
17710234 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
17710299 TCGACCGGAGAGG-TAGAATGCGGAAGTTGGGTACCGACCAGATCCCACCTACGTGCTATCGATC
66 TCGACCGGAGAGGCT-GAATGCGCAAGCTGGGGATCGACCTGGTCCC-TCTGCGTGCTACCGATC
* * * *
17710363 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
129 TTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
17710418 GC
1 GC
17710420 CTAAATCAAC
Statistics
Matches: 315, Mismatches: 47, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
183 5 0.02
184 147 0.47
185 3 0.01
187 1 0.00
188 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
195 2 0.01
196 152 0.48
197 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGGTCCCTCTGCGTGCTACCGATCTT
GCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:17710238 original size:26 final size:26
Alignment explanation
Indices: 17710209--17710261 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17710199 CCGGTCCAAT
17710209 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17710235 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17710261 C
1 C
17710262 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17710527 original size:158 final size:158
Alignment explanation
Indices: 17710235--17710535 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 158
17710225 ACTCCGTATG
* * * *
17710235 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * *
17710300 CGACCGGAGAGGTAGAATGCGGAAGTTGGGTACCGACCAGATCCCACCTACGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCGGAAGTGGGGTACAGACCAGATCCCACCTACGTACTATCGATCCT
*
17710365 GCTGCCGCAACCCTCGATCCGGTCTGAT
131 GCTGCCACAACCCTCGATCCGGTCTGAT
* * * * *
17710393 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAATCAACCCACAAAATGAGCGTTCAGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * *
17710457 CCGATCGGAGAGGCATAATGCGTAAGTGGGG-ATCAG-CCCGATCCCCCTCTACGTACTATC-AG
65 CCGACCGGAGAGGCAGAATGCGGAAGTGGGGTA-CAGACCAGATCCCAC-CTACGTACTATCGA-
17710519 T-CTCGCTGCCACAACCC
127 TCCT-GCTGCCACAACCC
17710536 ATCAGATCGG
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
157 14 0.12
158 105 0.88
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTCAGC
CGACCGGAGAGGCAGAATGCGGAAGTGGGGTACAGACCAGATCCCACCTACGTACTATCGATCCT
GCTGCCACAACCCTCGATCCGGTCTGAT
Found at i:17712119 original size:26 final size:26
Alignment explanation
Indices: 17712083--17712137 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
17712073 GGCGTGCGGG
*
17712083 TGCTCAGACATGGAATAAACTCCGTA
1 TGCTCAGACATGGAATAAACACCGTA
* *
17712109 TGCTTAGACATGGAATGAACACCGTA
1 TGCTCAGACATGGAATAAACACCGTA
17712135 TGC
1 TGC
17712138 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
TGCTCAGACATGGAATAAACACCGTA
Found at i:17713449 original size:158 final size:155
Alignment explanation
Indices: 17713109--17713449 Score: 352
Period size: 158 Copynumber: 2.2 Consensus size: 155
17713099 AACTCCGTAT
* *
17713109 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCCCAGCC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAAGGAGCGTGCGGGCCCAGCC
* * * * **
17713174 GCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGCCATTCCCGC
66 GCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCCTGCGTGCCACCATTCCCGC
* * * *
17713239 TGCCACAACCCTCGGTCCGGTTGGG
131 TACCACAACCCTCAGTCCAGTTGGA
* * *
17713264 GCTTAGACATGAAATGAACTGCC-TATGCCTAAGCCAACACACGAAAGGGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACACACGAAAGGAGCGTGCGGGC-C-CA
* **
17713328 -CTCGGTCGGAGAGGCAGAATGCACAAGTCAGGGATCGACCTTGTCCC-CCCTGCGTGCCACCGA
63 GC-C-G-CGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCCTGCGTGCCACC-A
** **
17713391 -TCTTGCTACTGCAACCCTCAGTCCAGTCT-GA
124 TTCCCGCTACCACAACCCTCAGTCCAGT-TGGA
*
17713422 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
17713450 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
155 51 0.34
156 4 0.03
157 6 0.04
158 54 0.36
159 37 0.24
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAAGGAGCGTGCGGGCCCAGCC
GCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCCTGCGTGCCACCATTCCCGC
TACCACAACCCTCAGTCCAGTTGGA
Found at i:17713464 original size:26 final size:26
Alignment explanation
Indices: 17713423--17713474 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17713413 CCAGTCTGAT
17713423 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17713449 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
17713475 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17716901 original size:14 final size:15
Alignment explanation
Indices: 17716877--17716934 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
17716867 TCTGACTGGA
17716877 CCAGAACCGAACCGC
1 CCAGAACCGAACCGC
*
17716892 CCAG-ACCGAACCGAA
1 CCAGAACCGAACCG-C
*
17716907 CCGGAACCGAACCGC
1 CCAGAACCGAACCGC
17716922 CCAG-ACCGAACCG
1 CCAGAACCGAACCG
17716935 AACCGGTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 18 0.49
15 10 0.27
16 9 0.24
ACGTcount: A:0.33, C:0.45, G:0.22, T:0.00
Consensus pattern (15 bp):
CCAGAACCGAACCGC
Found at i:17716904 original size:19 final size:19
Alignment explanation
Indices: 17716875--17716939 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
17716865 GGTCTGACTG
17716875 GACCAGAACCGAACCGCCCA
1 GACC-GAACCGAACCGCCCA
17716895 GACCGAACCGAA----CC-
1 GACCGAACCGAACCGCCCA
17716909 G---GAACCGAACCGCCCA
1 GACCGAACCGAACCGCCCA
17716925 GACCGAACCGAACCG
1 GACCGAACCGAACCG
17716940 GTACTGGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 17
0.69 0.00 0.31
Matches are distributed among these distances:
11 8 0.22
14 1 0.03
15 4 0.11
16 1 0.03
19 19 0.51
20 4 0.11
ACGTcount: A:0.34, C:0.43, G:0.23, T:0.00
Consensus pattern (19 bp):
GACCGAACCGAACCGCCCA
Found at i:17716916 original size:30 final size:30
Alignment explanation
Indices: 17716880--17716969 Score: 144
Period size: 30 Copynumber: 3.0 Consensus size: 30
17716870 GACTGGACCA
17716880 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
17716910 GAACCGAACCGCCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
* * * *
17716940 GTACTGGACCGTCCAGACCGAACCGAACCG
1 GAACCGAACCGCCCAGACCGAACCGAACCG
17716970 TCGAACCAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.31, C:0.41, G:0.24, T:0.03
Consensus pattern (30 bp):
GAACCGAACCGCCCAGACCGAACCGAACCG
Found at i:17717896 original size:193 final size:192
Alignment explanation
Indices: 17717650--17718031 Score: 678
Period size: 193 Copynumber: 2.0 Consensus size: 192
17717640 GCATGGCATG
* *
17717650 CATGACATAATTTCTTACGAAAAGTAAATTTAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACAT-ATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
17717715 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
17717780 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTCGAGAATAAATTTTTTTAA
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTA-TTTTCTCGAGAAT-AATTTTTTTAA
17717845 CATGACAT-TTTCTTACGAAAAATAAATTCGAG-CCTCCAAAGATGAGATTCTAAAAGTATTCCG
1 CATGACATATTTCTTACGAAAAATAAATT-GAGACCTCCAAAGATGAGATTCTAAAAGTATTCCG
*
17717908 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGA
65 AGTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGA
*
17717973 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTGATTTATTTTCTCGAGAATAATTTTT
130 ACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCGAGAATAATTTTT
17718032 AATAAATAAA
Statistics
Matches: 182, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
191 7 0.04
192 13 0.07
193 152 0.84
194 2 0.01
195 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (192 bp):
CATGACATATTTCTTACGAAAAATAAATTGAGACCTCCAAAGATGAGATTCTAAAAGTATTCCGA
GTAGAGATGCTTTAAGAAATCTCTAGGTGAGAAAGAATTCTTTTAATGTTACCAACGTACTGGAA
CATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTCTCGAGAATAATTTTTTTAA
Found at i:17718750 original size:1 final size:1
Alignment explanation
Indices: 17718746--17718793 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
17718736 GATGGGGCAT
* * * * *
17718746 AAAAAAAGAAAAAAAAAACAAAAAAACAAAAAAAAGAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
17718794 GGGATATATT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.90, C:0.06, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:17718787 original size:17 final size:17
Alignment explanation
Indices: 17718756--17718793 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
17718746 AAAAAAAGAA
17718756 AAAAAAAACAAAAAAAC
1 AAAAAAAACAAAAAAAC
*
17718773 AAAAAAAAGAAAAAAAC
1 AAAAAAAACAAAAAAAC
17718790 AAAA
1 AAAA
17718794 GGGATATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.89, C:0.08, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAAAAACAAAAAAAC
Found at i:17720593 original size:41 final size:41
Alignment explanation
Indices: 17720500--17720594 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
17720490 TATTTCAGAA
* *
17720500 GAACCATTCTCAATCAAGATTTCAAAGCCTCTGTTTAAAAG
1 GAACCATTTTCAATCAAGATTTCAAAGCCTCTGTCTAAAAG
* * *
17720541 GAACCAATTTCAATCAAGATTTCAAAGCCTCTGTCTAGAGG
1 GAACCATTTTCAATCAAGATTTCAAAGCCTCTGTCTAAAAG
*
17720582 GAACCTTTTTCAA
1 GAACCATTTTCAA
17720595 AAAAAAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (41 bp):
GAACCATTTTCAATCAAGATTTCAAAGCCTCTGTCTAAAAG
Found at i:17721018 original size:45 final size:44
Alignment explanation
Indices: 17720954--17721103 Score: 212
Period size: 45 Copynumber: 3.4 Consensus size: 44
17720944 ATCGATTCTG
* * *
17720954 TAAGACCTCCGGGCATGATTCTGTAAGGCCTCCAGATATGATGTC
1 TAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGACATGAT-TC
* *
17720999 TAAGACCTCCAGGCATGATT-TGTAAGACCTCCGGGCATGACTTC
1 TAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGACATGA-TTC
*
17721043 TAAGACCTCCGAGCATGATTCTGTAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGACATGA-TTC
17721088 TAAGACCTCCGGGCAT
1 TAAGACCTCCGGGCAT
17721104 AAAATTGATT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
44 36 0.39
45 57 0.61
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (44 bp):
TAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGACATGATTC
Found at i:17721070 original size:67 final size:66
Alignment explanation
Indices: 17720947--17721103 Score: 196
Period size: 67 Copynumber: 2.3 Consensus size: 66
17720937 TATTTCAATC
* *
17720947 GATTCTGTAAGACCTCCGGGCATGATTCTGTAAGGCCTCCAGATATGATGTCTAAGACCTCCAGG
1 GATT-TGTAAGACCTCCGGGCATGATTC-GTAAGACCTCCAGACATGATGTCTAAGACCTCC-GG
17721012 -CAT
63 ACAT
17721015 GATTTGTAAGACCTCCGGGCATGACTTC-TAAGACCTCC-GAGCATGAT-TCTGTAAGACCTCCG
1 GATTTGTAAGACCTCCGGGCATGA-TTCGTAAGACCTCCAGA-CATGATGTC--TAAGACCTCCG
17721077 GACAT
62 GACAT
*
17721082 GATTTCTAAGACCTCCGGGCAT
1 GATTTGTAAGACCTCCGGGCAT
17721104 AAAATTGATT
Statistics
Matches: 81, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
65 4 0.05
66 16 0.20
67 54 0.67
68 7 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (66 bp):
GATTTGTAAGACCTCCGGGCATGATTCGTAAGACCTCCAGACATGATGTCTAAGACCTCCGGACA
T
Found at i:17721098 original size:22 final size:22
Alignment explanation
Indices: 17720954--17721099 Score: 152
Period size: 22 Copynumber: 6.5 Consensus size: 22
17720944 ATCGATTCTG
* *
17720954 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGGACATGATT-TC
* * * *
17720977 TAAGGCCTCCAGATATGATGTC
1 TAAGACCTCCGGACATGATTTC
*
17720999 TAAGACCTCCAGG-CATGATTTG
1 TAAGACCTCC-GGACATGATTTC
* *
17721021 TAAGACCTCCGGGCATGACTTC
1 TAAGACCTCCGGACATGATTTC
*
17721043 TAAGACCTCC-GAGCATGATTCTG
1 TAAGACCTCCGGA-CATGATT-TC
17721066 TAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGACATGATTTC
17721088 TAAGACCTCCGG
1 TAAGACCTCCGG
17721100 GCATAAAATT
Statistics
Matches: 101, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.03
22 62 0.61
23 34 0.34
24 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (22 bp):
TAAGACCTCCGGACATGATTTC
Found at i:17721334 original size:49 final size:49
Alignment explanation
Indices: 17721170--17721676 Score: 544
Period size: 49 Copynumber: 10.3 Consensus size: 49
17721160 AAATTCAAAA
* *
17721170 AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
17721219 -AGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGTAGAGGAGCTTTTCC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCT----G-AGAGGAGCTTTTTC
* * * *
17721271 AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTAAGAGGAGCTTTTCC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
* * *
17721320 AAGATGAGATTTTTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTCC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
*
17721369 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGC-TTTTC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
* * * * *
17721417 TATATGAGA-TTTTAAAGTTGTTGAGCCTCTGTTGAGAGGACCTTTTTC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
* *
17721465 AAGA-AAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
** * *
17721513 AAGAAAAAAATTTTT-AAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTC
1 AAG-ATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
** ** * * * * *
17721562 AAGAAAATTTTTTTTTAAGTTTTTGAGCCTTTGCTGAGAGTAGGGGAGCTTTTCC
1 AAGATGA-GATTTTTAAAGTTGTGGAGCCTCTGCT--GAG-A--GGAGCTTTTTC
* *
17721617 AAGATGAGA-ATTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGTTTTTTC
1 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
17721665 -AGATGAGATTTT
1 AAGATGAGATTTT
17721677 CAGATGAGAT
Statistics
Matches: 394, Mismatches: 45, Indels: 39
0.82 0.09 0.08
Matches are distributed among these distances:
47 64 0.16
48 80 0.20
49 142 0.36
50 23 0.06
51 4 0.01
52 16 0.04
53 27 0.07
54 23 0.06
55 15 0.04
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.35
Consensus pattern (49 bp):
AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC
Found at i:17721545 original size:144 final size:146
Alignment explanation
Indices: 17721170--17721676 Score: 558
Period size: 144 Copynumber: 3.4 Consensus size: 146
17721160 AAATTCAAAA
* * *
17721170 AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAGATTTTAAA
1 AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAA
* *
17721234 GTTGTTGAGCCTCTGCTGAGAGTAGAGGAGCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCC
66 GTTGTGGAGCCTCTG-T---TG-AGAGGAGCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCC
*
17721299 TCTGCTAAGAGGAGCTTTTCC
126 TCTGCTAAGAGGACCTTTTCC
* * * * *
17721320 AAGATGAGATTTTTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTTTTCCAAGATGAGATTTTTAA
1 AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTT-A
* * * *
17721385 AGTTGTGGAGCCTCTGTTGAGAGGAGCTTTT-CTATATGAG-ATTTTAAAGTTGTTGAGCCTCTG
65 AGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCTCTG
* * *
17721448 TTGAGAGGACCTTTTTC
130 CTAAGAGGACCTTTTCC
** *
17721465 AAGA-AAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAAAAAAATTTTTA
1 AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAG-ATGAGATTTTTA
* * *** * * * *
17721529 AGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAAAATTTTTTTTTAAGTTTTTGAGCCTTT
65 AGTTGTGGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATAA-GAATTTTAAAGTTGTGGAGCCTCT
*
17721594 GCTGAGAGTAGGGGAGCTTTTCC
129 GCT-A-AG-A--GGACCTTTTCC
* *
17721617 AAGATGAGAA-TTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGTTTTTTC-AGATGAGATTTT
1 AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTT
17721677 CAGATGAGAT
Statistics
Matches: 303, Mismatches: 42, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
144 74 0.24
145 51 0.17
146 6 0.02
147 32 0.11
148 1 0.00
149 2 0.01
150 52 0.17
151 15 0.05
152 66 0.22
153 4 0.01
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.35
Consensus pattern (146 bp):
AAGATAAGAATTTTAAAGTTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAA
GTTGTGGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCTCTGC
TAAGAGGACCTTTTCC
Found at i:17721559 original size:193 final size:197
Alignment explanation
Indices: 17721170--17721565 Score: 588
Period size: 193 Copynumber: 2.0 Consensus size: 197
17721160 AAATTCAAAA
17721170 AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
1 AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
*
17721235 TTGTTGAGCCTCTGCTGAGAGTAGAGGAGCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCT
66 TTGTTGAGCCTCTGCT--GAGTAGAGGACCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCT
** * *
17721300 CTGCTAAGAGGAGCTTTTCCAAGATGAGATTTTTAAAGTTGTGGAGCCTTTGTTGAGAGGAGCTT
129 CTGCTAAGAGGAGCTTTTCCAAGAAAAAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTT
17721365 TTCC
194 TTCC
* * * *
17721369 AAGATGAGATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGC-TTTTCTATATGAGATTTTAAA
1 AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTC-AGATGAGATTTTAAA
* *
17721433 GTTGTTGAGCCTCTG-T-TG-AGAGGACCTTTTTCAAGA-AAGAATTTTAAAGTTGTGGAGCCTC
65 GTTGTTGAGCCTCTGCTGAGTAGAGGACCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCTC
* *
17721494 TGCTGAGAGGAGCTTTTTCAAGAAAAAAATTTTT-AAGTTGTGGAGCCTCTGTTGAGAGGAGCTT
130 TGCTAAGAGGAGCTTTTCCAAG-AAAAAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTT
*
17721558 TTTC
194 TTCC
17721562 AAGA
1 AAGA
17721566 AAATTTTTTT
Statistics
Matches: 181, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
193 81 0.45
194 24 0.13
195 1 0.01
198 6 0.03
199 69 0.38
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (197 bp):
AAGATGAGAATTTTAAAATTGTGGAGCCTCTGCTGAGAGGAGCTTTTTCAGATGAGATTTTAAAG
TTGTTGAGCCTCTGCTGAGTAGAGGACCTTTTCCAAGATAAGAATTTTAAAGTTGTGGAGCCTCT
GCTAAGAGGAGCTTTTCCAAGAAAAAATTTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCTTTT
CC
Found at i:17721678 original size:13 final size:13
Alignment explanation
Indices: 17721660--17721689 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
17721650 GAGAGGAGTT
17721660 TTTTCAGATGAGA
1 TTTTCAGATGAGA
17721673 TTTTCAGATGAGA
1 TTTTCAGATGAGA
17721686 TTTT
1 TTTT
17721690 AAAGTTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (13 bp):
TTTTCAGATGAGA
Found at i:17722930 original size:18 final size:18
Alignment explanation
Indices: 17722897--17722931 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17722887 TTATTTTATT
*
17722897 AATATTTATGTATGTTAA
1 AATATTTATATATGTTAA
*
17722915 AATATTTATATTTGTTA
1 AATATTTATATATGTTA
17722932 GATTAAATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (18 bp):
AATATTTATATATGTTAA
Done.