Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 125 of 138
Found at i:17724502 original size:26 final size:26
Alignment explanation
Indices: 17724466--17724518 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17724456 CCGGTCCGAT
*
17724466 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17724492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17724518 C
1 C
17724519 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17725562 original size:26 final size:26
Alignment explanation
Indices: 17725526--17725576 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17725516 CTGGTCTGAT
17725526 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17725552 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17725577 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17725829 original size:179 final size:180
Alignment explanation
Indices: 17725519--17725844 Score: 451
Period size: 179 Copynumber: 1.8 Consensus size: 180
17725509 CGTCGGTCTG
** **
17725519 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATCCCTAAG
1 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATAACTAAG
*
17725584 TCAACCCACGAAATAAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATACGTAAGCTGGGGA
66 TCAACCCACGAAAGAAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATACGTAAGCTGGGGA
17725649 TCGACCGGGTC-CCCTTCTGTGCGCTGTCAATCCTCTTACCCTTGGTCCA
131 TCGACCGGGTCTCCCTTCTGTGCGCTGTCAATCCTCTTACCCTTGGTCCA
* * *
17725698 GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATAACTAAG
1 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATAACTAAG
* * * ** * * *
17725763 TCAACCCACGGAACGAA-CGTGCGGGTGCTTAGTTGGCCAGAGGGGCATGATGCGTAAG-TCGGG
66 TCAACCCAC-GAAAGAAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATACGTAAGCT-GGG
**
17725826 GATCGGTCGGGTCTCCCTT
129 GATCGACCGGGTCTCCCTT
17725845 TGCATGCTAC
Statistics
Matches: 126, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
178 1 0.01
179 115 0.91
180 10 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (180 bp):
GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATAACTAAG
TCAACCCACGAAAGAAGCGTGCAGGTGCTCAGCCGACCAGAGGGGCAGGATACGTAAGCTGGGGA
TCGACCGGGTCTCCCTTCTGTGCGCTGTCAATCCTCTTACCCTTGGTCCA
Found at i:17734757 original size:26 final size:26
Alignment explanation
Indices: 17734728--17734778 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17734718 CCGGTCTGAT
17734728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17734754 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17734779 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17735842 original size:26 final size:26
Alignment explanation
Indices: 17735792--17735842 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17735782 CCAGTCTGAT
**
17735792 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17735818 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17735843 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17735941 original size:180 final size:180
Alignment explanation
Indices: 17735606--17735945 Score: 412
Period size: 180 Copynumber: 1.9 Consensus size: 180
17735596 CTCGGTCTAC
* * * **
17735606 TCTGATCATAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
** * * * * * **
17735671 CAACCCATGAAATGAGCGTACGGGCGCTCAGTCAGCCAGAGGGCCAGGATGTGCAAGTCGAGGAT
66 CAACCCACAAAACGAGCGTACAGGCGCTCAGCCAACCAGAGGGCCAGGATGCGCAAACCGAGGAT
* * *
17735736 CAGTCGGGTCCCTCTTTGTGTGCTGTCGATTCTGCTACCCTTCGATCCAG
131 CAGCCGGGTCCCTCTCTGCGTGCTGTCGATTCTGCTACCCTTCGATCCAG
* ***
17735786 TCTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
1 TCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
* * * * *
17735851 CAACCCACAAAACGAGTGTCCAGGTGCTCAGCCAACCAGAGGGGCAGGATGCGTAAACCGAGGAT
66 CAACCCACAAAACGAGCGTACAGGCGCTCAGCCAACCAGAGGGCCAGGATGCGCAAACCGAGGAT
**
17735916 TGGCCGGGTCTCC-CTCTGCGTGCTGTCGAT
131 CAGCCGGGTC-CCTCTCTGCGTGCTGTCGAT
17735946 CCTATTGCCT
Statistics
Matches: 131, Mismatches: 28, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
180 129 0.98
181 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (180 bp):
TCTGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
CAACCCACAAAACGAGCGTACAGGCGCTCAGCCAACCAGAGGGCCAGGATGCGCAAACCGAGGAT
CAGCCGGGTCCCTCTCTGCGTGCTGTCGATTCTGCTACCCTTCGATCCAG
Found at i:17736730 original size:26 final size:26
Alignment explanation
Indices: 17736701--17736753 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17736691 CCGATCTGAT
17736701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17736727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17736753 C
1 C
17736754 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17736907 original size:26 final size:26
Alignment explanation
Indices: 17736864--17736921 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
17736854 TCTTCTTACC
17736864 CTCCG-AT-CTTAGACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
* *
17736888 CTTCGTATGCTTATACTGGGAATGAA
1 CTCCGTATGCTTAGACTGGGAATGAA
17736914 CTCCGTAT
1 CTCCGTAT
17736922 AACTAAGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 23 0.79
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTGGGAATGAA
Found at i:17736994 original size:170 final size:170
Alignment explanation
Indices: 17736698--17737018 Score: 507
Period size: 170 Copynumber: 1.9 Consensus size: 170
17736688 GATCCGATCT
**
17736698 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * * *
17736763 CCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAAGGGCAGGATGCATAAGTCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAAGGGCAAGATGCACAAGCCGGGGATCGA
* * *
17736828 TCGGGTCCCCCTCTGCGTGTTATCGATCTTCTTACCCTCC
131 CCGAGTCCCCCTCTACGTGTTATCGATCTTCTTACCCTCC
* *
17736868 GATCTTAGACTGGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCGTATAACTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * *
17736933 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAAGGGCAAGATGCACAAGCCGGGGATCGA
*
17736998 CCGAGTCTCCCTCTACGTGTT
131 CCGAGTCCCCCTCTACGTGTT
17737019 GCTGATCCTG
Statistics
Matches: 136, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
170 136 1.00
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (170 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAAGGGCAAGATGCACAAGCCGGGGATCGA
CCGAGTCCCCCTCTACGTGTTATCGATCTTCTTACCCTCC
Found at i:17739053 original size:153 final size:155
Alignment explanation
Indices: 17738763--17739154 Score: 466
Period size: 153 Copynumber: 2.5 Consensus size: 155
17738753 TGTGCTGTCA
* * * *
17738763 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAA
* * * * * *
17738828 ACGAGCTTGTGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCAATCGGGCCT
66 ACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCAGGGATCAATCGGGCCT
*
17738893 CTATCTACGTGCTGCCGATC-CT-G
131 CCATCTACGTGCTGCCGATCTCTCG
* * * * *
17738916 CTACCCTCAGTCCGATTCGATCTTAGATTGGGAATGAACTCTGTATAACTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAA
* * * **
17738981 ACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGCAAGATGCGCAAGCCGGGGATCGA-CTGGGTT
66 ACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCAGGGATCAATC-GGGCC
*
17739045 TCCCTCTACGTGCTGCCGATCTTACTACCG
130 TCCATCTACGTGCTGCCGATC-T-CT--CG
* * * * *
17739075 CAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATACCTAGGCCAACCGACGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAA
*
17739140 ACGAGCGGGCGGGCG
66 ACGAGCGTGCGGGCG
17739155 GGCACTATGC
Statistics
Matches: 199, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
152 1 0.01
153 126 0.63
156 2 0.01
159 70 0.35
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (155 bp):
CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATACCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAGCCAGGGATCAATCGGGCCT
CCATCTACGTGCTGCCGATCTCTCG
Found at i:17740012 original size:27 final size:27
Alignment explanation
Indices: 17739974--17740058 Score: 152
Period size: 27 Copynumber: 3.1 Consensus size: 27
17739964 ACTGGGAATG
17739974 AACTCTGTATAACTAAGTCAAACCATA
1 AACTCTGTATAACTAAGTCAAACCATA
17740001 AACTCTGTATAACTAAGTCAAACCATA
1 AACTCTGTATAACTAAGTCAAACCATA
*
17740028 AACTCTGTATAACTAAGTCAACCCATGA
1 AACTCTGTATAACTAAGTCAAACCAT-A
17740056 AAC
1 AAC
17740059 AAGCGTACGG
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 52 0.93
28 4 0.07
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.25
Consensus pattern (27 bp):
AACTCTGTATAACTAAGTCAAACCATA
Found at i:17741143 original size:153 final size:153
Alignment explanation
Indices: 17740909--17741195 Score: 403
Period size: 153 Copynumber: 1.9 Consensus size: 153
17740899 ACTCTGTACA
** * *
17740909 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTACGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGC
* * * * *
17740974 TGGCCAGAGGGGCAGGATGCGCAAGCCAAGGATTGGCCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGACCAGAAGGGCAGGATGCACAAGCCAAGGATTGACCGGGTCCCCCTCTGCATGCTGCCGATCC
17741039 TGCTACCCTCATTCTGGTCTGAT
131 TGCTACCCTCATTCTGGTCTGAT
* * * *
17741062 CTTAGACTGGGAATGAACTCCGTATAACTAAGTTAACCCATGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGC
** * * * *
17741127 CGACCAGAAGGGCAGGATGCACAAGCCGCGGATTGACTGGGTCTCCCTCTGCGTGTTGCCGATCC
66 CGACCAGAAGGGCAGGATGCACAAGCCAAGGATTGACCGGGTCCCCCTCTGCATGCTGCCGATCC
17741192 TGCT
131 TGCT
17741196 GCCACAACCC
Statistics
Matches: 115, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
153 115 1.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (153 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGC
CGACCAGAAGGGCAGGATGCACAAGCCAAGGATTGACCGGGTCCCCCTCTGCATGCTGCCGATCC
TGCTACCCTCATTCTGGTCTGAT
Found at i:17742251 original size:26 final size:26
Alignment explanation
Indices: 17742215--17742265 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17742205 TGACTTAGTT
*
17742215 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
17742241 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
17742266 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:17742422 original size:27 final size:27
Alignment explanation
Indices: 17742384--17742435 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
17742374 TTTGTGGGTT
*
17742384 GACTTAGGCATACGGAGTTCATTCCTA
1 GACTTAAGCATACGGAGTTCATTCCTA
17742411 GACTTAAGCATACGGAGTTCATTCC
1 GACTTAAGCATACGGAGTTCATTCC
17742436 CAGTCTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (27 bp):
GACTTAAGCATACGGAGTTCATTCCTA
Found at i:17742455 original size:179 final size:180
Alignment explanation
Indices: 17742052--17742463 Score: 497
Period size: 179 Copynumber: 2.3 Consensus size: 180
17742042 CGTCGATTGG
* * * * **
17742052 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATTGAGGTTGCGATTAGGATCGG
1 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG--G-TAACAGGATCGG
* * * * * *
17742117 TAGAACGTAGAGGGAGACCCGATTGATCCCAGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGT
63 CAGAACGAAGAGGGAGACCCGATCGATCCCAGGCTTACGCATCCTACCCCTCTGGCCGACTGAGC
* ** * ** *
17742182 GCCTGCATGCTCGTTTTATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGT
128 GCCCGCACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGA
*
17742235 C-TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTAACAGGATCGGCAG
1 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAACAGGATCGGCAG
* * * **
17742299 CACGAATAGGGGGACCC-AGTCGATCCCA-GCTTACGCATCCTACCCCTCTGGCCGGTTGAGCGC
66 AACGAAGAGGGAGACCCGA-TCGATCCCAGGCTTACGCATCCTACCCCTCTGGCCGACTGAGCGC
* * *
17742362 CCGCACATTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGA
130 CCGCACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGA
* *
17742413 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGGAGGGT
1 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
17742464 TACGATAGCA
Statistics
Matches: 196, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
178 73 0.37
179 78 0.40
180 1 0.01
182 43 0.22
183 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (180 bp):
CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTAACAGGATCGGCAG
AACGAAGAGGGAGACCCGATCGATCCCAGGCTTACGCATCCTACCCCTCTGGCCGACTGAGCGCC
CGCACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGA
Found at i:17744655 original size:179 final size:179
Alignment explanation
Indices: 17744340--17744668 Score: 426
Period size: 179 Copynumber: 1.8 Consensus size: 179
17744330 CAATCCGGTA
* * ** **
17744340 TGATCTTAGATTGGGAATGAACTCCATATACTTAGATTGGGAATGAACTCTGCATGCCTAAGTCA
1 TGATCTTAGACTAGGAATGAACTCCATATACTTAGATTGGGAATGAACTCCACATAACTAAGTCA
* * * * * *
17744405 ACCCACGAAACAAGCGTGCTGGCGCTCAACCGGCCAGAGGGGTAGGATGTGCAAGCCAAGGATCG
66 ACCCACGAAACAAGCGTACGGGCACTCAACCGGCCAAAGGGGTAGGATGCGCAAGCCAAGGATCA
17744470 GTCGGGT-TCCCCTCTGCGTGTTGTCGATCCTGCTACCCTCAGTTTGGTC
131 GTCGGGTCT-CCCTCTGCGTGTTGTCGATCCTGCTACCCTCAGTTTGGTC
* * * *
17744519 TGATCTTAGACTAGGAATGAACTCTATTTGCTTAGATTGGGAATGAACTCCATATAACTAAGTCA
1 TGATCTTAGACTAGGAATGAACTCCATATACTTAGATTGGGAATGAACTCCACATAACTAAGTCA
** ** ****
17744584 ACCCACGAAATGAGCGTACGGGCACTCAGTCGGCCAAAGGGGTAGGATGCGCAAGTTGGGGATCA
66 ACCCACGAAACAAGCGTACGGGCACTCAACCGGCCAAAGGGGTAGGATGCGCAAGCCAAGGATCA
17744649 GTCGGGTCTCCCTCTGCGTG
131 GTCGGGTCTCCCTCTGCGTG
17744669 CTACTGATCC
Statistics
Matches: 125, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
179 124 0.99
180 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (179 bp):
TGATCTTAGACTAGGAATGAACTCCATATACTTAGATTGGGAATGAACTCCACATAACTAAGTCA
ACCCACGAAACAAGCGTACGGGCACTCAACCGGCCAAAGGGGTAGGATGCGCAAGCCAAGGATCA
GTCGGGTCTCCCTCTGCGTGTTGTCGATCCTGCTACCCTCAGTTTGGTC
Found at i:17745001 original size:26 final size:26
Alignment explanation
Indices: 17744962--17745014 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17744952 CCGGTCCGAT
* *
17744962 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17744988 CTTAGATTGAGAATGCACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17745014 C
1 C
17745015 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17745170 original size:26 final size:26
Alignment explanation
Indices: 17745141--17745191 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17745131 CTGATTCGAT
* * *
17745141 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
17745167 CTTAGAATAGGAATGAACTCCGTAT
1 CTTAGAATAGGAATGAACTCCGTAT
17745192 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:17745265 original size:618 final size:617
Alignment explanation
Indices: 17744087--17745300 Score: 1533
Period size: 618 Copynumber: 2.0 Consensus size: 617
17744077 AAACCTGTAA
* ** * *
17744087 AATCTCAAGTGCTCTTTAAGGTGTTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AATCTCAAATGCTCTTTAAGACG-TGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAAT
* * *
17744152 ATAAGGGACTAGTACCAGCACCAACGCACATCATGTGTGCACACCCCCCGCCCCCCAATTGTCGG
65 ATAAGGGACAAGTACCAGCACCAACGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGG
*
17744217 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGGTGAAAAAAA
130 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGGCGAAAAAAA
* ** * ** *
17744282 ATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCAATCCGGTATGATCTT
195 ATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCAATCCGGTACGATCTT
* * *
17744347 AGATTGGGAATGAACTCCATATACTTAGATTGGGAATGAACTCTGCATGCCTAAGTCAACCCACG
260 AGACTGGGAATGAACTCCATATACTTAGATTGAGAATGAACTCCGCATGCCTAAGTCAACCCACG
* * ** *
17744412 AAACAAGCGTGCTGGCGCTCAACCGGCCAGAGGGGTAGGATGTGCAAGCCAAGGATCGGTCGGGT
325 AAACAAGCGTGCTGGCGCTCAACCGACCAGAGGGGTAGGATGCGCAAGCCAAGGATCGACCAGGT
* * ** *
17744477 TCCCCTCTGCGTGTTGTCGATCCTGCTACCCTCAGTTTGGTCTGATCTTAGACTAGGAATGAACT
390 TCCCCTCTGCGTGCTGCCGATCCTGCTAAACTCAGTCTGGTCTGATCTTAGACTAGGAATGAACT
* * * * ** *
17744542 CTATTTGCTTAGATTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAATGAGCGTACGGGC
455 CTATATGCTTAGAATAGGAATGAACTCCATATAACTAAGTCAACCCACAAAACAACCGTACGGGC
** * * * ** * *
17744607 ACTCAGTCGGCCAAAGGGGTAGGATGCGCAAGTTGGGGATCAGTCGGGTCTCCCTCTGCGTGCTA
520 ACTCAACCGGCCAAAGGAGCAGGATGCACAAGCCGGGGATCAGCCAGGTCTCCCTCTGCGTGCTA
17744672 -CTGATCCTACTGCTACAACCCTCAGTCTGGTCC
585 TC-GATCCTACTGCTACAACCCTCAGTCTGGTCC
*
17744705 AATCTCAAATGCTCTTTAAGACG-GTGT-ATGTTCTCAAGGTTTGATGAGGGATAATGGGCCAAT
1 AATCTCAAATGCTCTTTAAGACGTGTGTGA-GTTCTCAAGGTTTGATGAGGGATAAGGGGCCAAT
* *
17744768 ATAA-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCACCCAATCG
65 ATAAGGGACAAGTACCAGCA-CCAACGCACATCATGTGCGCACACCCCC-C-GCCC-CCCAATCG
* ** * * * *
17744832 TCGGAACCCCAATGTCGTTGGTCAGGTTCTCTGATGATGCTCCGGCGATGGTG-CCCGGGCGAAA
126 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGGCGAAA
* *
17744896 AAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACATCCCTCAATCCGGTCCGA
191 AAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCAATCCGGTACGA
* * * * *
17744961 TCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGAGAATGCACTCCGTATGCCTAAGTCAACC
256 TCTTAGACTGGGAATGAACTCCATATACTTAGATTGAGAATGAACTCCGCATGCCTAAGTCAACC
** * ** * * * * *
17745026 CACGAAATGAGTGTG-TGGGCGCTCAGTCGATCAGAGGGTTAGGATGCGTAAGTCAGGGATCGAC
321 CACGAAACAAGCGTGCT-GGCGCTCAACCGACCAGAGGGGTAGGATGCGCAAGCCAAGGATCGAC
* * *
17745090 CAGGTTCCCCTCTGCGTGCTGCCGATCCTGCTAAACTCGGTCTGAT-TCGATCTTAGACTGGGAA
385 CAGGTTCCCCTCTGCGTGCTGCCGATCCTGCTAAACTCAGTCTGGTCT-GATCTTAGACTAGGAA
* * *
17745154 TGAACTCTGTATGCTTAGAATAGGAATGAACTCCGTATAACTAAGTCAACCCATAAAACAACCGT
449 TGAACTCTATATGCTTAGAATAGGAATGAACTCCATATAACTAAGTCAACCCACAAAACAACCGT
** * * * * *
17745219 GTGGGCGCTCAACCGGCTAGAGGAGCAGGATGCACAAGCCGGGGATCGGCCAGGTCTCTCTCTGC
514 ACGGGCACTCAACCGGCCAAAGGAGCAGGATGCACAAGCCGGGGATCAGCCAGGTCTCCCTCTGC
17745284 GTGCTATCGATCCTACT
579 GTGCTATCGATCCTACT
17745301 TCGTAACCCT
Statistics
Matches: 503, Mismatches: 85, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
615 14 0.03
616 65 0.13
617 3 0.01
618 367 0.73
619 54 0.11
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (617 bp):
AATCTCAAATGCTCTTTAAGACGTGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATA
TAAGGGACAAGTACCAGCACCAACGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGGGCGAAAAAAAA
TGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCAATCCGGTACGATCTTA
GACTGGGAATGAACTCCATATACTTAGATTGAGAATGAACTCCGCATGCCTAAGTCAACCCACGA
AACAAGCGTGCTGGCGCTCAACCGACCAGAGGGGTAGGATGCGCAAGCCAAGGATCGACCAGGTT
CCCCTCTGCGTGCTGCCGATCCTGCTAAACTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTC
TATATGCTTAGAATAGGAATGAACTCCATATAACTAAGTCAACCCACAAAACAACCGTACGGGCA
CTCAACCGGCCAAAGGAGCAGGATGCACAAGCCGGGGATCAGCCAGGTCTCCCTCTGCGTGCTAT
CGATCCTACTGCTACAACCCTCAGTCTGGTCC
Found at i:17745266 original size:179 final size:183
Alignment explanation
Indices: 17744956--17745351 Score: 441
Period size: 179 Copynumber: 2.2 Consensus size: 183
17744946 CTCAATCCGG
* * **
17744956 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGAGAATGCACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATAGAGAATGAACTCCGTATAACTAAGT
* ** ** ** * ** *
17745021 CAACCCACGAAATGAGTGTGTGGGCGCTCAGTCGATCAGAGGGTTAGGATGCGTAAGTCAGGGAT
66 CAACCCACAAAACAACCGTGTGGGCGCTCAACCGATCAGAGGGTCAGGATGCACAAGCCAGGGAT
* *
17745086 CGACCAGGT-TCCCCTCTGCGTGCTGCCGAT-C-CTGC-TAA-ACTCGGTCTGA
131 CGACCAGGTCT-CCCTCTGCGTGCTACCGATCCACTGCGTAACACTCGATCTGA
*
17745135 TTCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGAATAG-GAATGAACTCCGTATAACTAA
1 TCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAG-ATAGAGAATGAACTCCGTATAACTAA
* * *
17745198 GTCAACCCATAAAACAACCGTGTGGGCGCTCAACCG-GCTAGAGGAG-CAGGATGCACAAGCCGG
64 GTCAACCCACAAAACAACCGTGTGGGCGCTCAACCGATC-AGAGG-GTCAGGATGCACAAGCCAG
* * * * *
17745261 GGATCGGCCAGGTCTCTCTCTGCGTGCTATCGATCCTACTTCGTAACCCTCGATCTGA
127 GGATCGACCAGGTCTCCCTCTGCGTGCTACCGATCC-ACTGCGTAACACTCGATCTGA
17745319 TCCGATCTTAGACTGGGAATGAACTTCGTATGC
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGC
17745352 CTAAGCCAAC
Statistics
Matches: 179, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
178 3 0.02
179 124 0.69
180 6 0.03
182 3 0.02
183 3 0.02
184 38 0.21
185 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (183 bp):
TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATAGAGAATGAACTCCGTATAACTAAGT
CAACCCACAAAACAACCGTGTGGGCGCTCAACCGATCAGAGGGTCAGGATGCACAAGCCAGGGAT
CGACCAGGTCTCCCTCTGCGTGCTACCGATCCACTGCGTAACACTCGATCTGA
Found at i:17745991 original size:26 final size:26
Alignment explanation
Indices: 17745962--17746012 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17745952 CCGATTCGAT
*
17745962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
17745988 CTTAGACTGGGAATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
17746013 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17746236 original size:153 final size:153
Alignment explanation
Indices: 17745988--17746276 Score: 364
Period size: 153 Copynumber: 1.9 Consensus size: 153
17745978 ACTCCGTATG
** * * *
17745988 CTTAGACTGGGAATAAACTCCGTATTCCTAAGTCAATCCAAGAAACTAGAGTACAGTCACTCAGC
1 CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCAAGAAACGAGAGTACAGGCACTCAGC
* * * *
17746053 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGGGCTGTCAATC
66 CGGCCAGAAGGGCAAGATGCACAAGACGGGGATCGGCT-GGGTCCCCCTCTGCGGGCTGTCAATC
17746117 CTGCTACCCTCGATCCAATCTGAT
130 CTGCTACCCTCGATCCAATCTGAT
* * * * * * *
17746141 CTTAGACTGGGAATGAACTCTGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCAAGAAACGAGAGTACAGGCACTCAGC
* * * * * *
17746206 CGGCCAGAAGGGCAAGATGCGCGAGACGGGGATCGGCTGGGTCTCCCTCTGTGTGCTGTCGATCC
66 CGGCCAGAAGGGCAAGATGCACAAGACGGGGATCGGCTGGGTCCCCCTCTGCGGGCTGTCAATCC
17746271 TGCTAC
131 TGCTAC
17746277 TGATCCTGCT
Statistics
Matches: 113, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
153 111 0.98
154 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (153 bp):
CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCAAGAAACGAGAGTACAGGCACTCAGC
CGGCCAGAAGGGCAAGATGCACAAGACGGGGATCGGCTGGGTCCCCCTCTGCGGGCTGTCAATCC
TGCTACCCTCGATCCAATCTGAT
Found at i:17747922 original size:26 final size:26
Alignment explanation
Indices: 17747893--17747945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17747883 TCGGTCTGAT
*
17747893 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17747919 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17747945 C
1 C
17747946 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17748189 original size:178 final size:181
Alignment explanation
Indices: 17747885--17748282 Score: 543
Period size: 178 Copynumber: 2.2 Consensus size: 181
17747875 CGTAACCCTC
* * * **
17747885 GGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTATACTGGGAATGAACTCCGTATGCCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAA
* * * * * *
17747950 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
66 GTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGAGG
* *
17748015 ATCAGTCGGGTCCCCCTCTGCATGCTA-CTGATCCTGCTACT-CTC-GGT-T
131 ATCAGTCGGGTCCCCCTCTACATGCTATC-GATCCTACTACTACTCTGGTCT
* *
17748063 GGTTTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAA
* *
17748128 GTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGTCGGAGGGGCAAGATGCACAAGCCGAGG
66 GTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGAGG
* * *
17748193 ATCGGTCGGGTCTCCCTCTACGTGCTATCGATCCTACTACTGCAACTCTTGGTCT
131 ATCAGTCGGGTCCCCCTCTACATGCTATCGATCCTACTACT---ACTC-TGGTCT
17748248 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
17748283 CTAAGCCAAC
Statistics
Matches: 190, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
178 149 0.78
179 1 0.01
182 3 0.02
184 3 0.02
185 34 0.18
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (181 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAA
GTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGAGG
ATCAGTCGGGTCCCCCTCTACATGCTATCGATCCTACTACTACTCTGGTCT
Found at i:17750175 original size:337 final size:338
Alignment explanation
Indices: 17749550--17750302 Score: 945
Period size: 337 Copynumber: 2.2 Consensus size: 338
17749540 GCCCAGCATG
* * * *
17749550 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTTA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCA
* * *
17749614 ACCCACAAAAGGAGTGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGATGCACAAGTCGAGGATCG
65 ACCCACAAAACGAGTGCGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATCG
* * *
17749679 ACCGAGTCCCTCTCTACATGCTACTGATCCTGCTACCCTCGGTCCAGTCCGATCTTAGAGTAGGA
130 ACCGAGTCCCCCTCTACATGCTACTGATCCTGCTACCCTCGGTCCAGTACGATCTTAGAATAGGA
* * * * *
17749744 ATGAACTCCATATGCTTAGACTGGGAATGAATTCCGTATAACTAAGTCAACCTACGAAACGAGCG
195 ATGAACTCCATATCCTAAGACTGGGAATGAACTCAGTATAACTAAGTCAACCCACGAAACGAGCG
* ** * *
17749809 TGCAGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGACCGGGTCTCCCTCCG
260 TGCAGGCGCTCAGCCAACCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGGTCTCCCTCCA
* *
17749874 CGTGCTACCGATTC
325 CGTGCTACCAATCC
* * **
17749888 TGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGATTGAAAATGAACTCTGTATGCCTAAGTCAA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * * *
17749953 CCCACAAAACGAGTGCGCGGGCGTTCAGTCGGCCAGAGGGGCAGGATGCGCAA-TCGGGGATTGA
66 CCCACAAAACGAGTGCGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATCGA
* * * * * * * *
17750017 TCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCCTCGATTC-GATATGATCTTTGAATAGGA
131 CCGAGTCCCCCTCTACATGCTACTGATCCTGCTACCCTCGGTCCAG-TACGATCTTAGAATAGGA
* * *
17750081 ATGAACTTCGTATCCTAAGACTGGGAATGAACTCAGTATAACTAAGTCAACCCATGAAACGAGCG
195 ATGAACTCCATATCCTAAGACTGGGAATGAACTCAGTATAACTAAGTCAACCCACGAAACGAGCG
* * * *
17750146 TGCAGGCGCTCAGCCAACCAGATGGGCAGGATGCGCAAGTCGGGGATCGGCCTGGTCTCCCTCTA
260 TGCAGGCGCTCAGCCAACCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGGTCTCCCTCCA
* *
17750211 CGTGTTGCCAATCC
325 CGTGCTACCAATCC
* * * * * * * *
17750225 TGCTATCACAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCTATATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* *
17750290 CCGACGAAACGAG
66 CCCACAAAACGAG
17750303 CGGGCGGGTG
Statistics
Matches: 351, Mismatches: 62, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
336 1 0.00
337 247 0.70
338 102 0.29
339 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (338 bp):
TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACAAAACGAGTGCGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATCGA
CCGAGTCCCCCTCTACATGCTACTGATCCTGCTACCCTCGGTCCAGTACGATCTTAGAATAGGAA
TGAACTCCATATCCTAAGACTGGGAATGAACTCAGTATAACTAAGTCAACCCACGAAACGAGCGT
GCAGGCGCTCAGCCAACCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGGTCTCCCTCCAC
GTGCTACCAATCC
Found at i:17751001 original size:26 final size:26
Alignment explanation
Indices: 17750965--17751017 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17750955 CCGGTCTAAT
*
17750965 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17750991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17751017 C
1 C
17751018 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17751181 original size:26 final size:26
Alignment explanation
Indices: 17751143--17751193 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17751133 TCCCTCTGAT
*
17751143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17751169 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17751194 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17752073 original size:26 final size:26
Alignment explanation
Indices: 17752037--17752087 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17752027 CTGGTCTGTT
*
17752037 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
17752063 CTTAGACTGGGAATGAAATCCGTAT
1 CTTAGACTGGGAATGAAATCCGTAT
17752088 CACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:17752964 original size:26 final size:26
Alignment explanation
Indices: 17752926--17752978 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17752916 TTGGTCCGAT
*
17752926 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17752952 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17752978 C
1 C
17752979 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17753418 original size:887 final size:881
Alignment explanation
Indices: 17751140--17755733 Score: 5068
Period size: 887 Copynumber: 5.2 Consensus size: 881
17751130 CAGTCCCTCT
* * *
17751140 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATAACTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTAGGAATGAACTCCGTAT-CCAAAGTCAA
* * * * * *
17751205 CCCTCGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGGGCTAGGATGCGCAAGCCGAAGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGG
* * * * * * *
17751270 TCGGCTCTCCCTTTACGTGCTATCGATCATGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGAC
129 TCGGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGAC
* * * *
17751335 TGGGAATGAACTCCATATGCCTAAGCTC-ACCGACGAAACGAGCGGGCAGGTGGGCACTACGTCG
194 TGGGAATGAACTCCGTATGCCTAAGC-CAACCGATGAAACGAGCGGGCGGGCGGGCACTAC--CG
17751399 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
256 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
17751464 ATATTTCTG--ATGTACAATTGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAGCC
321 ATATTTCTGCCATG-CCAA-TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17751526 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTCAAATTTTTTAC
384 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* *
17751591 GGTTCGGGATTTTTTTAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCT
449 GGTTCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * * *
17751656 TGTATTTTTTTGGCATGTACAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTCTGTGACC
514 TGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
17751721 ATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
579 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17751786 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG-GCGGATAGGGGGCCAATATAAGGA
644 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGCCAATATAAGGG
* * *
17751850 CCAAGTACCAGCACCTATCGCCCATCATGTGCG--CA---CCCTCCCGGCCTCCCCAATCGTC-G
708 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACC-CCCCAATCGTCAG
* * * * *
17751909 GAACCCCAATGCCACTGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAGGTAAAAAAA
772 GAACCCCAATG-C-C--GCCA-G---TCAGGT--T-CTCCGGTGATGGTGCCCGA-G-CAAAAAA
* * * * ** *
17751974 AATACGGCAGCAGCACATACCCGAGCCCACCATGTGCTATCGCAACCCTCAGTCTGGTCT
824 AATACGGCACCAGCACAT-GCCGAGCCCAGCATGTACTGCCGCAACCCTCA-TCTGGTCC
* * * *
17752034 GTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATCCGTATCACTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTAGGAATGAACTCCGTATC-CAAAGTCAA
* * * * * * * *
17752099 CCCACGAAACAAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCACGATGCACAAGCCGGGGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGG
* * * ** **
17752164 TCGGGTCTCCCTCTGTGTGCTGCCGATCCTACTGTCGTAACCCTCGATCTGGTTCAATCTTAGAC
129 TCGGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGAC
* * * * *
17752229 TAGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGCGGGTGGGCGGGCAGTACGTCGG
194 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTAC--CGG
* * *
17752294 ACAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCA
257 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * **
17752359 TATTTTTTCCATTTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
322 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * *
17752424 ATATGAAGTTTAATGGCAAGATGACTTGTTTTTTATTTTTCATAATTTTTGAAACTTTTTACGGT
387 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * * * *
17752489 TCGAGATTTTTTAAAATTTTTTTAGAAGAAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGT
452 TCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
17752554 ATTCTTGTTGGCATGCACAAAAAAATTCAACAAAAAACTCGAAGTGTACAAGATTGTGTGACCAT
517 ATT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
17752619 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAA
581 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17752684 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCA
646 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* *
17752749 AGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCTCTCGACCCCCCTAATCG-CAGGAA
711 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACCCCCC-AATCGTCAGGAA
* * **
17752813 CCCTAATGCCGCCAGTCAAGTTCTCCGGTGATGGTGCCTCGAGCGAAAAAAAATGTGGCACCAGC
775 CCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGGTGCC-CGAGC-AAAAAAAATACGGCACCAGC
* * * *
17752878 ACATGCCGAGCCCAGTATCTACTGCCGTAACCCTCGATTTGGTCC
838 ACATGCCGAGCCCAGCATGTACTGCCGCAACCCTC-ATCTGGTCC
17752923 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCAAAGTCAA
1 GATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTAGGAATGAACTCCGTAT-CCAAAGTCAA
* * *
17752988 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGAAGCACAAGCCGAGGATCGG
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGG
*
17753053 TTGGGTCTCCCTCTGCGGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGA
129 TCGGGTCTCCCTCTGC-GTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGA
17753118 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTA-CGGC
193 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACCGGC
* *
17753182 CAGAGAGGCGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
258 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
17753247 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
323 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
17753312 TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
388 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * * *
17753377 CGGGATTTTTTTTAATTTTTTTAGAAGGAGTTTCGGCCCCAAAATTGGTAGACATGATCCTTGTA
453 CGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
17753442 TTTTTGTTGGCATGCATAAAACATTTTAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATT
518 -TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * * *
17753507 TCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCGAACCTATAAAATCTCAAA
582 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
17753572 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
647 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
17753637 GTACCAGTACCCATCGCACATCATGTGTGCACACCCCCCTCCCGACCCCTCCAATCG-CAGGAAC
712 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACCCC-CCAATCGTCAGGAAC
* * * * *
17753701 CCCAATTTCGTCGGTCAGTTCTTCGATGATGCTCCGGTGATGGTGTCCCGGGCAAAAAAAATACG
776 CCCAA--T-G-CCGCCAG----TC-A-GGTTCTCCGGTGATGGTG-CCCGAGCAAAAAAAATACG
* * * * *
17753766 GCACCTGTACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCAGT-TCGGTCT
830 GCACCAGCACATG-CCGAGCCCAGCATGTACTGCCGCAACCCTCA-TCT-GGTCC
*
17753820 GATCTTAGATTGGGAATG-A-----A--CTT---C---G--T--A-T--G---CCAAAGTCAACC
1 GATCTTAGACTGGGAATGAACTCCTATGCTTAGACTAGGAATGAACTCCGTATCCAAAGTCAACC
* * * * * * * *
17753861 CACGAAATGAACGTGAGGGCGCTCAACCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGGTC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGGTC
**
17753926 GGGTC-CCC-CT-C-TG----C-A---TGCT---G-----C-CGA--T--TTTG---TTACCCTG
131 GGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGACTG
* * * *
17753963 GGAATGAACTCCGTATACGTAAGCCAACCGAT-AGAACGAGCGGGCGGGCAGGCACTACGCCGAC
196 GGAATGAACTCCGTATGCCTAAGCCAACCGATGA-AACGAGCGGGCGGGCGGGCACTA--CCGGC
* *
17754027 CAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
258 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
17754092 ATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
323 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
17754157 TGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
388 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* * * * *
17754222 CGAGATTTTTTAAAATTTTTTCAGAACGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTA
453 CGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
17754287 TTTTTTTTGGCTTGCACAAAACAATTCAGCTAAAAATTCGAAGTGTACAATATTTTGTGACCATT
518 -TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * *
17754352 TGAAAAATGTGTCCCCATTTTAGACACTTTACTGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
582 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* **
17754417 TGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCCAA
647 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
17754482 GTACCAGCACCCATCGCACGTCATGTGCGCACA-CCCCCT--GGCCCCCCCAATCGTCA-GAACC
712 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACCCCCCAATCGTCAGGAACC
* *** * * * *
17754543 TCAATGCCGTTGGTTAGGTTCTCTGACGAAGCTCTGGCGATGGCGCCCCGGGCAAAAAAAATGCG
777 CCAATGCCGCCAGTCAGGTTCTC---CG--G---T---GATGGTG-CCCGAGCAAAAAAAATACG
* * * * * * *
17754608 ACACCAGCAC-TTCTCAAGCCTAGCATGTGA-TGTCGCAACCCTCGGTCCGGTCC
830 GCACCAGCACATGC-CGAGCCCAGCATGT-ACTGCCGCAACCCTC-ATCTGGTCC
*
17754661 GATCTTTGACTGGGAATGAA---CT-T-C---G--T----AT-AA---C---T---AAGTCAACC
1 GATCTTAGACTGGGAATGAACTCCTATGCTTAGACTAGGAATGAACTCCGTATCCAAAGTCAACC
* ** *
17754702 TACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGTTGAGAATCGGTC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGGTC
* ** * * * *
17754767 GGGTCTCCCTCTGTGTGCTGTCGATCCTGCTATCATAACCCTC-ATTTTGGTCTGATCTTAGACT
131 GGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGA-TCTGGTTTGATCTTAGACT
* * * *
17754831 GGGAATGAACTCTGTATGCCTAAGCCAACCGATTAAATGAGCGGGCGGGCGAGCACTACACCGGC
195 GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACT--ACCGGC
* * * *
17754896 CAGAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCAT
258 CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
17754961 ATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCTCTTAAGCCTTC
323 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTC
*
17755025 ATGTGAAGTTTCATGGCTAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
387 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* *
17755090 TCGGGA-TTTTTTAATATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
452 TCGGGATTTTTTTAA-ATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
17755154 TATTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTGA-AGGATTTTGTGACCA
516 TATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT-ACAAGATTTTGTGACCA
* * * *
17755218 TTTGAACAAAGTGTCCCCATTTTAGACACTTTTATGGCTACTGGCAGCAAGCCTGTAAAATCTCA
580 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
17755283 AATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
645 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
17755348 AAGTACCAGCACCCATCGCACATCATGCGCGCACA--CCCC-CCGGCCCCCCCAATCGTC-GAAA
710 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACCCCCCAATCGTCAGGAA
* * *
17755409 CCCCAATGCCATCGATCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGTGCCAAAAAAAAT
775 CCCCAATG-C--CG-CCA-G---TCAGGT--T-CTCCGGTGATGGTG-CCCGAG-CAAAAAAAAT
* * * * * * ** ** * * *
17755474 ATGGCACTAGCACATACCCGAGCCTAGTATGTGCTATCATAACCTTCAGTCCGATCC
827 ACGGCACCAGCACAT-GCCGAGCCCAGCATGTACTGCCGCAACCCTCA-TCTGGTCC
* * * *
17755531 AATCTTAGACTGGGAATGACCTCTGTATGCTTAGAC------TGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTC-CTATGCTTAGACTAGGAATGAACTCCGTAT-CCAAAGTCAA
* * * * * * * * * * *
17755590 CCCATGAAACAAGCGTGTGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGTCGGGGGTCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGG
* * * *** * * *
17755655 TCGAGTCCCCCTCTACGTGCTGTTGATCCTGCTACCCT-A-GCT---TC-GGTCTGATCTTAGAC
129 TCGGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGAC
17755714 TGGGAATGAACTCCGTATGC
194 TGGGAATGAACTCCGTATGC
17755734 TTAGACTAGG
Statistics
Matches: 3187, Mismatches: 372, Indels: 292
0.83 0.10 0.08
Matches are distributed among these distances:
831 5 0.00
832 1 0.00
833 1 0.00
834 2 0.00
836 1 0.00
837 4 0.00
838 1 0.00
839 2 0.00
840 1 0.00
841 130 0.04
842 100 0.03
843 3 0.00
844 8 0.00
845 459 0.14
847 1 0.00
849 4 0.00
850 2 0.00
853 4 0.00
855 1 0.00
858 4 0.00
861 3 0.00
862 2 0.00
864 1 0.00
866 5 0.00
867 4 0.00
868 251 0.08
869 315 0.10
870 50 0.02
871 75 0.02
872 1 0.00
873 1 0.00
874 2 0.00
875 2 0.00
876 7 0.00
877 1 0.00
878 2 0.00
879 5 0.00
880 3 0.00
882 1 0.00
883 1 0.00
884 34 0.01
885 2 0.00
886 1 0.00
887 479 0.15
888 9 0.00
889 159 0.05
890 228 0.07
891 8 0.00
893 5 0.00
894 314 0.10
895 141 0.04
896 234 0.07
897 71 0.02
898 4 0.00
899 1 0.00
900 6 0.00
901 25 0.01
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (881 bp):
GATCTTAGACTGGGAATGAACTCCTATGCTTAGACTAGGAATGAACTCCGTATCCAAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGAGGATCGGTC
GGGTCTCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGATCTGGTTTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACCGGCCAG
AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
GATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCTCCCGACCCCCCAATCGTCAGGAACCCCAA
TGCCGCCAGTCAGGTTCTCCGGTGATGGTGCCCGAGCAAAAAAAATACGGCACCAGCACATGCCG
AGCCCAGCATGTACTGCCGCAACCCTCATCTGGTCC
Found at i:17755745 original size:26 final size:26
Alignment explanation
Indices: 17755707--17755757 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17755697 TCGGTCTGAT
*
17755707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17755733 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17755758 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17757862 original size:26 final size:26
Alignment explanation
Indices: 17757824--17757874 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17757814 CTGATTTGAT
* *
17757824 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17757850 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17757875 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17759997 original size:26 final size:26
Alignment explanation
Indices: 17759968--17760020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17759958 CTGGTTCGAT
* *
17759968 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17759994 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17760020 C
1 C
17760021 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:17760270 original size:179 final size:179
Alignment explanation
Indices: 17759964--17760450 Score: 625
Period size: 179 Copynumber: 2.7 Consensus size: 179
17759954 CGGTCTGGTT
* * **
17759964 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCA
** * * ** **
17760029 ACCCATGAAATGAGTGTGGGGGCACTCAGTCGGCCGGAGGGGCAGGATGCGCAAGCCGGGGATCG
66 ACCCATGAAATGAGCATGCGGGCACTCAGCCAACCAAAGGGGCAGGATGCGCAAGCCGGGGATCG
* *
17760094 GTCGGGTCCCCCTTTGCGTGCTGTCGATCCGGCTACCCTAGGTCCGATC
131 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCGGCTACCCTAGGTCCGATC
** * *
17760143 CGATCTTAGACTAGGAATGAACTCCATATCCTTAGACTGGGAATGAACTCCGTATAACAAAGTCA
1 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCA
* *
17760208 ACCCATGAAATGAGCATGCGGGCATTCAGCCAACCAAAGGGGCAGGATGCGCAAGTCGGGGATCG
66 ACCCATGAAATGAGCATGCGGGCACTCAGCCAACCAAAGGGGCAGGATGCGCAAGCCGGGGATCG
* * *
17760273 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCCTCGGTCCGGTC
131 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCGGCTACCCTAGGTCCGATC
** * *
17760322 TAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAATTCCGTGTAACTAAGTCA
1 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCA
** ** * * * ** *
17760387 ACCCACAAAACAAGCGTACGGGCGCTCAGCCGGCCAGAA-GGGCAGGATGCGCAAGCCAGGGATC
66 ACCCATGAAATGAGCATGCGGGCACTCAGCCAACCA-AAGGGGCAGGATGCGCAAGCCGGGGATC
17760451 AGTCAGGTTC
Statistics
Matches: 264, Mismatches: 43, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
179 262 0.99
180 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.29, T:0.21
Consensus pattern (179 bp):
CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCA
ACCCATGAAATGAGCATGCGGGCACTCAGCCAACCAAAGGGGCAGGATGCGCAAGCCGGGGATCG
ATCGGGTCCCCCTCTGCGTGCTGTCGATCCGGCTACCCTAGGTCCGATC
Found at i:17761480 original size:26 final size:26
Alignment explanation
Indices: 17761451--17761503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17761441 CCGGTCCGAT
*
17761451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
17761477 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
17761503 C
1 C
17761504 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17761666 original size:26 final size:26
Alignment explanation
Indices: 17761630--17761680 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17761620 CCGATTTGAT
17761630 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
17761656 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACACCATAT
17761681 AACTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:17761754 original size:179 final size:179
Alignment explanation
Indices: 17761448--17761792 Score: 447
Period size: 179 Copynumber: 1.9 Consensus size: 179
17761438 GGTCCGGTCC
* * * * **
17761448 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACACCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCATATAACTAAGTCAA
* * * * * *
17761513 CCCACGAAGCGAGCGTGCGGGTGCTCAACTGACCAGAGAGGCAGGATGTGCAAGAAGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGGAGGCGCAAGAAGGGGATCGA
* *
17761578 TCGGGTCTCCCTCTACGTGCTGTCGATCCTGCTACCCTCAGTCCGATTT
131 TAGGGTCTCCCTCCACGTGCTGTCGATCCTGCTACCCTCAGTCCGATTT
* *
17761627 GATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTGAA
1 GATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCATATAACTAAGTCAA
* * * * * **
17761692 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTATGAGGCGCAAGTCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGGAGGCGCAAGAAGGGGATCGA
** * *
17761757 TATTGTCTTCCTCCGCGTGCTGTCGATCCTGCTACC
131 TAGGGTCTCCCTCCACGTGCTGTCGATCCTGCTACC
17761793 ACAACCCTCA
Statistics
Matches: 139, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
179 139 1.00
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (179 bp):
GATCTTAGACTGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCATATAACTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGGAGGCGCAAGAAGGGGATCGA
TAGGGTCTCCCTCCACGTGCTGTCGATCCTGCTACCCTCAGTCCGATTT
Found at i:17762564 original size:26 final size:26
Alignment explanation
Indices: 17762528--17762580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17762518 CTGGTCTGAT
*
17762528 CTTAGACTGGGACTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17762554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17762580 C
1 C
17762581 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17762736 original size:26 final size:26
Alignment explanation
Indices: 17762707--17762757 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17762697 CCGATCCAAT
* *
17762707 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17762733 CTTAGACTGGAAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
17762758 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17763579 original size:84 final size:84
Alignment explanation
Indices: 17763433--17763603 Score: 247
Period size: 84 Copynumber: 2.0 Consensus size: 84
17763423 ATCAATATCG
17763433 GCCGCCCGCACGCATGACTGACACCCAACATCATGCTAGTCCCACAAGGAGACTTGGGTGGACTG
1 GCCGCCCGCACGCATGACTGACACCCAACATCATGCTAGTCCCACAAGGAGACTTGGGTGGACTG
*
17763498 CCCCAGCAGCAGCACACCA
66 CCCCAACAGCAGCACACCA
* ** * * *
17763517 GCCGTCCGCACGCATGGTTGACA-CCAACCCTCATGCTAGTCCCGCAATGG-GGCTTGGGTGGAC
1 GCCGCCCGCACGCATGACTGACACCCAA-CATCATGCTAGTCCCACAA-GGAGACTTGGGTGGAC
17763580 TGCCCCAACAGCAGCACACCA
64 TGCCCCAACAGCAGCACACCA
17763601 GCC
1 GCC
17763604 ACAGGGGTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
83 4 0.05
84 72 0.92
85 2 0.03
ACGTcount: A:0.23, C:0.38, G:0.25, T:0.13
Consensus pattern (84 bp):
GCCGCCCGCACGCATGACTGACACCCAACATCATGCTAGTCCCACAAGGAGACTTGGGTGGACTG
CCCCAACAGCAGCACACCA
Found at i:17765628 original size:24 final size:25
Alignment explanation
Indices: 17765601--17765656 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
17765591 TCGTGATCCT
17765601 CTGACCATGA-GAACTCC-TGGTCCA
1 CTGACCAT-ACGAACTCCATGGTCCA
* *
17765625 CTGACCA-ACGCAGTCCATGGTCCA
1 CTGACCATACGAACTCCATGGTCCA
17765649 CTGACCAT
1 CTGACCAT
17765657 CACACTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 1 0.04
23 5 0.19
24 21 0.78
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.20
Consensus pattern (25 bp):
CTGACCATACGAACTCCATGGTCCA
Found at i:17769615 original size:25 final size:26
Alignment explanation
Indices: 17769587--17769638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17769577 TCGATCTGAT
*
17769587 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17769612 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17769638 C
1 C
17769639 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17769905 original size:178 final size:178
Alignment explanation
Indices: 17769584--17769923 Score: 475
Period size: 178 Copynumber: 1.9 Consensus size: 178
17769574 AGTTCGATCT
* ** * **
17769584 GATCTTAGACTGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 GATCTTACACTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAAC
* * * *
17769649 CAATGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGTAGGATGCCCAAGCCGGGGATCGAT
66 CAACGAAACGAGCGTACAGGCACTCAGCCGACCAAAGGGGTAGGATGCCCAAGCCGGGGATCGAT
*
17769714 CGAGTCCCCCTCTACGTGCTGCCAATCCTGCTACCCTCAGTCTGGTCC
131 CGAGTCCCCCTCTACGTGCTACCAATCCTGCTACCCTCAGTCTGGTCC
*
17769762 GATCTTACACTGGGTATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
1 GATCTTACACT-GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * * * *
17769827 CCCACGAAACGAGCGTACAGGCACTCA-TCGACCAGAGGGGTAGGATGCGCAAGTCGGGGATCGA
65 CCAACGAAACGAGCGTACAGGCACTCAGCCGACCAAAGGGGTAGGATGCCCAAGCCGGGGATCGA
* * * *
17769891 TCGGGTCTCCCTCTATGTGCTACCGATCCTGCT
130 TCGAGTCCCCCTCTACGTGCTACCAATCCTGCT
17769924 CTCGTAACCC
Statistics
Matches: 140, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
178 70 0.50
179 70 0.50
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (178 bp):
GATCTTACACTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAAC
CAACGAAACGAGCGTACAGGCACTCAGCCGACCAAAGGGGTAGGATGCCCAAGCCGGGGATCGAT
CGAGTCCCCCTCTACGTGCTACCAATCCTGCTACCCTCAGTCTGGTCC
Found at i:17771816 original size:179 final size:179
Alignment explanation
Indices: 17771511--17771856 Score: 480
Period size: 179 Copynumber: 1.9 Consensus size: 179
17771501 TGCAGCCGTA
* * * * * * *
17771511 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGGTTACACTGGGAATGAATTC
1 ACCCTCGGTCCGATCCAATCTTACACTAGGAATGAACTCCATATGCTTACACTAGGAATGAACTC
** *
17771576 CGTATGCCTAAGTCAACCCACGAAACACGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACACGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGA
* *
17771641 GCAAG-CTGGGGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATCCTGCT
131 GCAAGTC-GGGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCT
* * *
17771690 ACCCTCGGTCCGGTCTAATCTTACACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTC
1 ACCCTCGGTCCGATCCAATCTTACACTAGGAATGAACTCCATATGCTTACACTAGGAATGAACTC
* * *
17771755 CGTATAACTAAGTCAACTCATGAAACGA-GCGTACGGGCGCTCAACCGGCCAGAGTGGCAGGATG
66 CGTATAACTAAGTCAACCCACGAAAC-ACGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATG
* *
17771819 AGCAAGTCGGGGATCGGTCAGGTCTCCCTCTGTGTGCT
130 AGCAAGTCGGGGATCGGTCAGGTCCCCCTCTGCGTGCT
17771857 GCTGCAACCT
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
179 143 0.99
180 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (179 bp):
ACCCTCGGTCCGATCCAATCTTACACTAGGAATGAACTCCATATGCTTACACTAGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACACGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGA
GCAAGTCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCT
Found at i:17772623 original size:26 final size:26
Alignment explanation
Indices: 17772594--17772646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17772584 CCGGTCCGAT
*
17772594 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17772620 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17772646 C
1 C
17772647 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17773516 original size:26 final size:26
Alignment explanation
Indices: 17773465--17773517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17773455 CTGGTCCGAT
*
17773465 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17773491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17773517 C
1 C
17773518 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17773792 original size:871 final size:868
Alignment explanation
Indices: 17771693--17774147 Score: 3538
Period size: 871 Copynumber: 2.8 Consensus size: 868
17771683 TCCTGCTACC
** * * *
17771693 CTCGGTCCGGTCTAATCTTACACTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
** * * * * *
17771758 ATAACTAAGTCAACTCATGAAACGAGCGTACGGGCGCTCAACCGGCCAG-AGTGGCAGGATGAGC
66 ATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAG-GGTAGGATGAGC
* * * * * * *
17771822 AAGTCGGGGATCGGTC-AGGTCTCCCTCTGTGTGCTG-C--TGC-A--ACCTTCAGTCTGGTCTG
130 AAG-CGGGGATCGATCGA-GTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTTTGGTCTG
17771880 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCA
193 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCA
* *
17771945 CAACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
258 CTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
** * ** * *
17772010 AGATCTTCATATTTCTACCATGCCAATTTCATTTTTAT-GTTTTTTAAATTCATACAATGGTCCC
323 ACTTCTTCATATTTCTGCCATGCCAATGCCATTTTTATAG-CTTGTAAATTCATACAATGGTCCC
* * *
17772074 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGA-TTTTCAAAA
387 TTAAGCC-TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAA
* * *
17772138 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTTGCCCCAAAATTGGTAGAC
451 -TTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
17772203 GTGATCCATT-TATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGA
515 GTGATCC-TTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGA
17772267 TTTTGTGAACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
578 TTTTGTGAACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
*
17772332 ATAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAA
643 GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGG-TT--T----G--A---TG----
*
17772397 TATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCTCCAAACG
692 ----AGGGCCAAGTACTAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCTCCAAACG
17772462 TCAGAACCCCAATGCCGCCGATCAGGTTCTCCGGTTGACGCTCCGGCGATGGTGCCCCAGGCGAA
753 TCAGAACCCCAATGCCGCCGATCAGGTTCTCCGGTTGACGCTCCGGCGATGGTGCCCCAGGCGAA
17772527 AAAAATTGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTGGTCACA
818 AAAAATTGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGTGGTCACA
* * *
17772578 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* *
17772643 ATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAGGGTAGGATGCGTA
66 ATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAGGGTAGGATGAGCA
* * * * *
17772708 AGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCTGATCCTACTACCCTTGGTTTGGTCTGAT
131 AG-CGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTTTGGTCTGAT
* * *
17772773 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACT
195 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
* * * *
17772838 ACGTCGGCTAGAAAGACGGGATGCGCAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
260 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
17772903 TTCTTCATATTTCTGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
325 TTCTTCATATTTCTGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
17772968 AGACCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAATTT
390 AG-CCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAATTT
* * *
17773033 TTACAGTTCGAGATTTTTTAAAATTTTTTTAGAAGAAGTTTTGGCCCCAAACTTGGTAGACATGA
454 TTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
17773098 TCCTTGTATTTCTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTG
519 TCCTTGTATTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTG
* *
17773163 TTAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
583 TGAACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
17773228 ATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCCAAGTACTAGTACCC
648 ATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGCCAAGTACTAGCACCC
*** * * *
17773293 ATTGTACATCATGTGCACATACCCCCCCGGCCCC-CCAATCGTC-GAAACCCCAATGCCGTCGAT
712 ATCACACATCATGTGCACACA-CCCCCCGGCCCCTCCAAACGTCAG-AACCCCAATGCCGCCGAT
* * * * *
17773356 TAGGTTCTTCGG-TGATGCTCCGGCGATGGTGCCTCGGGCGTAAAAAAA-TGCAGCACCAGCACA
775 CAGGTTCTCCGGTTGACGCTCCGGCGATGGTGCCCCAGGCG-AAAAAAATTGCAGCACCAGCACA
*
17773419 TGCCCGAGCCCAGCATGTGCTGTGG-CAACA
839 AGCCCGAGCCCAGCATGTGCTGTGGTC-ACA
* *
17773449 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* * * * * *
17773514 ATGCCTAAGTCAACCCATGGAACGAGTGTGCGGGCACTCAGCCAGCAAGAAGGGTAGGATGTGCA
66 ATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAGGGTAGGATGAGCA
17773579 AGCAGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTTTGGTCTGAT
131 AGC-GGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTTTGGTCTGAT
* * *
17773644 CTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGGACGGGCGGGCACT
195 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
* * *
17773709 ACATCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
260 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCAC
17773774 TTCTTCATATTTCTGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
325 TTCTTCATATTTCTGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
* *
17773839 AGCCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTCGAAACTTT
390 AG-CCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAATTT
* *
17773904 TTATGGTTCGAGATTTTTTAAAATATTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
454 TTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
17773969 TCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTA
519 TCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTG
* * * * *
17774034 TGACCATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGCCTACTAGCAGCAATCCTGTAAA
583 TGAACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
17774099 ATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
648 ATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
17774148 ATAGGGGGCC
Statistics
Matches: 1425, Mismatches: 125, Indels: 54
0.89 0.08 0.03
Matches are distributed among these distances:
870 4 0.00
871 711 0.50
872 77 0.05
873 12 0.01
880 2 0.00
883 1 0.00
885 138 0.10
886 2 0.00
888 2 0.00
889 2 0.00
890 5 0.00
891 439 0.31
892 30 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (868 bp):
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACACATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAAGGGTAGGATGAGCA
AGCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTTTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACT
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAAATTTTT
ACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGA
ACATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGCCAAGTACTAGCACCCATCA
CACATCATGTGCACACACCCCCCGGCCCCTCCAAACGTCAGAACCCCAATGCCGCCGATCAGGTT
CTCCGGTTGACGCTCCGGCGATGGTGCCCCAGGCGAAAAAAATTGCAGCACCAGCACAAGCCCGA
GCCCAGCATGTGCTGTGGTCACA
Found at i:17774507 original size:26 final size:26
Alignment explanation
Indices: 17774478--17774527 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17774468 CAATCCGATT
17774478 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17774504 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17774528 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17777103 original size:26 final size:26
Alignment explanation
Indices: 17777052--17777104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17777042 CCGGTTCGAT
* * *
17777052 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17777078 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17777104 C
1 C
17777105 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17777270 original size:26 final size:26
Alignment explanation
Indices: 17777231--17777281 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17777221 CCGGTCTGAT
*
17777231 CTTAGACCGAGAATGAACTTCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
17777257 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACCGAGAATGAACTCCGTAT
17777282 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17777340 original size:179 final size:179
Alignment explanation
Indices: 17777033--17777371 Score: 477
Period size: 179 Copynumber: 1.9 Consensus size: 179
17777023 TGCTACCAGA
* * *
17777033 ACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
1 ACCCTCAATCCGGTTCGATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
** *
17777098 CATATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGCTAGCCAGAAGGGCAGGATGC
66 CATATAACTAAGTCAACCCATGAAACAAGCATGCAGGCGCTCAGCTAGCCAGAAGGGCAGGATGC
* **
17777163 ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTATCGATCCTGTT
131 ACAAGCCAGGGATCGACCGGGTCCCCCTCTGTGTGCTATCGATCCTGTT
*
17777212 ACCCTCAATCCGG-TCTGATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCAATCCGGTTC-GATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTAGGAATGAACT
* * * *
17777276 CCGTATAACTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG-TCGGCCA-AAGCGGCAGGA
65 CCATATAACTAAGTCAACCCATGAAACAAGCATGCAGGCGCTCAGCT-AGCCAGAAG-GGCAGGA
* * *
17777339 TGCGCAAGTCAGGGATCGACCGGGTCTCCCTCT
128 TGCACAAGCCAGGGATCGACCGGGTCCCCCTCT
17777372 ACGTGCTGCC
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
178 6 0.04
179 134 0.96
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (179 bp):
ACCCTCAATCCGGTTCGATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
CATATAACTAAGTCAACCCATGAAACAAGCATGCAGGCGCTCAGCTAGCCAGAAGGGCAGGATGC
ACAAGCCAGGGATCGACCGGGTCCCCCTCTGTGTGCTATCGATCCTGTT
Found at i:17778336 original size:26 final size:26
Alignment explanation
Indices: 17778307--17778356 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17778297 CAGTCCGATT
17778307 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17778333 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17778357 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17778423 original size:179 final size:182
Alignment explanation
Indices: 17778111--17778517 Score: 543
Period size: 179 Copynumber: 2.2 Consensus size: 182
17778101 TGTTGCAACT
* * *
17778111 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACAGGGAATGAACTTCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGT
* * *
17778176 ATAACTAAGTCAACCCACAAAACGAGCGTGCGAGCGCTCAGCTAGCCAGAAGGGCAGGATGCGCA
66 ATAACTAAGTCAACCCACAAAACGAACGTGCGAGCGCTCAACCAGCCAGAAGGGCAGGATGCGCA
* * *
17778241 AGCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT-C-CTGCT-ACC
131 AGCCAGGGATCGGTCGGGTCCCCCTCTCCGTGCTACCAATCCGCTGCTAACC
* * *
17778290 CTCGGTCCAGTCCGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGT
** * * *
17778355 ATAACTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAACCGGCCAG-AGTGGCAGGATGTGC
66 ATAACTAAGTCAACCCACAAAACGAACGTGCGAGCGCTCAACCAGCCAGAAG-GGCAGGATGCGC
* * *
17778419 AAGCCAGGGATCGGTCGGGTCTCCCTCTCCGTGCTATCGATCCTGCTGCTGCAACC
130 AAGCCAGGGATCGGTCGGGTCCCCCTCTCCGTGCTACCAATCC-GCTGCT--AACC
* * *
17778475 TTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17778518 CTAAGCCAAC
Statistics
Matches: 196, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
178 2 0.01
179 147 0.75
180 1 0.01
182 5 0.03
185 41 0.21
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (182 bp):
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGT
ATAACTAAGTCAACCCACAAAACGAACGTGCGAGCGCTCAACCAGCCAGAAGGGCAGGATGCGCA
AGCCAGGGATCGGTCGGGTCCCCCTCTCCGTGCTACCAATCCGCTGCTAACC
Found at i:17781318 original size:147 final size:146
Alignment explanation
Indices: 17781063--17781342 Score: 330
Period size: 147 Copynumber: 1.9 Consensus size: 146
17781053 CAACCCTCGA
* ** * *
17781063 TCCGGTCTGATCTTAGACTGGAATGAACTCCGTATCCCTAAGTCAAACCACGAAACGAGCATGCA
1 TCCGGTCTGATCTTAGACTGGAATGAACTCCGAATAACTAAGTCAAACCAAGAAACAAGCATGCA
* * * **
17781128 GGTGCTCAGCCAGCCAGATGGGCAAGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTG
66 GGCGCTCAGCCAGCCAGATAGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTG
17781193 CTGTCGATACCCTTGG
131 CTGTCGATACCCTTGG
* *
17781209 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGAATAACTAAGT-TAACCTAAGAAACAAGCGTG
1 TCCGGTCTGATCTTAGACT-GGAATGAACTCCGAATAACTAAGTCAAACC-AAGAAACAAGCATG
* * * * * * * * *
17781273 CGGGCGCTCAGCCGGCTAGGA-AGGCAGGATGCGCAAGTCGGGGATCGACCGTGTCTCCTTCTGT
64 CAGGCGCTCAGCCAGCCA-GATAGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGT
17781337 GTGCTG
128 GTGCTG
17781343 CCAATCCTGC
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
146 23 0.21
147 85 0.77
148 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.21
Consensus pattern (146 bp):
TCCGGTCTGATCTTAGACTGGAATGAACTCCGAATAACTAAGTCAAACCAAGAAACAAGCATGCA
GGCGCTCAGCCAGCCAGATAGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGTGTG
CTGTCGATACCCTTGG
Found at i:17784777 original size:26 final size:26
Alignment explanation
Indices: 17784739--17784788 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17784729 CAGTCTGATT
*
17784739 TTAGACTGGGAATGAACTCCGTATTC
1 TTAGACTGAGAATGAACTCCGTATTC
17784765 TTAGACTGAGAATGAACTCCGTAT
1 TTAGACTGAGAATGAACTCCGTAT
17784789 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATTC
Found at i:17785686 original size:26 final size:26
Alignment explanation
Indices: 17785635--17785686 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17785625 CCAATCCGAT
* *
17785635 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17785661 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17785687 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17785852 original size:26 final size:26
Alignment explanation
Indices: 17785814--17785864 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17785804 CCGATCCGAT
17785814 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17785840 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTAGGAATGAACTCCATAT
17785865 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17785946 original size:179 final size:179
Alignment explanation
Indices: 17785616--17785977 Score: 499
Period size: 179 Copynumber: 2.0 Consensus size: 179
17785606 TGCTACCGCA
* * * *
17785616 ACCCTCGGTCCAATCCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
1 ACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
** * *
17785681 CATATGGCTAAGTCAACCCATGAAACGAGCGTGCGTGTGCTCAGCCAGCCAGAGGGGAAGGATAC
66 CATATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGAAGGATAC
*** * * ** *
17785746 GTAAGTTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
131 GTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCCTGCT
*
17785795 ACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * * * *
17785860 CATATAACTAAGTCAGCCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGTGGCAGGATGC
66 CATATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGAAGGATAC
* *
17785925 GTAAGCCAGGGATCAGTCGGGTCTCTCTCTACGTGCTACCAATCCTGCT
131 GTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCCTGCT
17785974 ACCC
1 ACCC
17785978 CAACCCTCGA
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
179 158 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (179 bp):
ACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CATATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGAAGGATAC
GTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCCTGCT
Found at i:17786727 original size:26 final size:27
Alignment explanation
Indices: 17786691--17786746 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
17786681 GGTTCGATAA
17786691 TAGACTGGGAATGAACTCCATATG-CT
1 TAGACTGGGAATGAACTCCATATGCCT
*
17786717 TAGACTGGGAATGAACTCCTTATGCCT
1 TAGACTGGGAATGAACTCCATATGCCT
17786744 TAG
1 TAG
17786747 TCAACCCACG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGACTGGGAATGAACTCCATATGCCT
Found at i:17787001 original size:179 final size:179
Alignment explanation
Indices: 17786691--17787022 Score: 488
Period size: 179 Copynumber: 1.9 Consensus size: 179
17786681 GGTTCGATAA
* ** *
17786691 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCTTATGCCTTAGTCAACCCAC
1 TAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCTTATAACTAAGTCAACCCAC
* * * *
17786756 GAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGATCGGG
66 GAAACGAGCGTGAGGGCGCTCAACCGGCAAGAGGGACAGGATGCGCAAGCCGAGGATCGATCGGG
17786821 TC-CTCCTCTGCATGCTACCGATCGTACTACCCTCATTTCGATCTGATCT
131 TCTC-CCTCTGCATGCTACCGATCGTACTACCCTCATTTCGATCTGATCT
*
17786870 TAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAA-TTCTGTATAACTAAGTCAACCCA
1 TAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCT-TATAACTAAGTCAACCCA
* * * * *
17786934 CGAAACGAGCGTGAGGGCGTTCAGCCGGTAAGAGGGACAGGATGCGCAAGCCGGGGATCGGTCGG
65 CGAAACGAGCGTGAGGGCGCTCAACCGGCAAGAGGGACAGGATGCGCAAGCCGAGGATCGATCGG
* *
17786999 GTCTCCCTCTGCGTGCTGCCGATC
130 GTCTCCCTCTGCATGCTACCGATC
17787023 CTGCTGCTGC
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
178 3 0.02
179 131 0.97
180 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.21
Consensus pattern (179 bp):
TAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCTTATAACTAAGTCAACCCAC
GAAACGAGCGTGAGGGCGCTCAACCGGCAAGAGGGACAGGATGCGCAAGCCGAGGATCGATCGGG
TCTCCCTCTGCATGCTACCGATCGTACTACCCTCATTTCGATCTGATCT
Found at i:17788846 original size:26 final size:26
Alignment explanation
Indices: 17788810--17788862 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17788800 CTGGTCCTAT
* *
17788810 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17788836 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17788862 C
1 C
17788863 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17789120 original size:178 final size:179
Alignment explanation
Indices: 17788808--17789136 Score: 529
Period size: 178 Copynumber: 1.8 Consensus size: 179
17788798 GTCTGGTCCT
* * **
17788808 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAAC
** * *
17788873 CCACGAAACGAGCGTGCGGGCGCTCAGTTCGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
66 CCACGAAACGAGCGTGCGGGCGCTCAGACCGCCAGAGGGGCAGGATGCACAAGCCAGGGATCAGT
*
17788938 CGGGTCCCCCTCTGCGTGCTGCGGATCCCGCTACCCTCAGTCCGATTCG
131 CGGGTCCCCCTCTACGTGCTGCGGATCCCGCTACCCTCAGTCCGATTCG
17788987 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-C-TGATAACTAAGTCAA
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT-ATAACTAAGTCAA
17789050 CCCACGAAACGAGCGTGCGGGCGCTCA-ACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCA
65 CCCACGAAACGAGCGTGCGGGCGCTCAGACC-GCCAGAGGGGCAGGATGCACAAGCCAGGGATCA
*
17789114 GTCGGGTCTCCCTCTACGTGCTG
129 GTCGGGTCCCCCTCTACGTGCTG
17789137 TCGATCCTAC
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
177 2 0.01
178 91 0.66
179 45 0.33
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (179 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGACCGCCAGAGGGGCAGGATGCACAAGCCAGGGATCAGT
CGGGTCCCCCTCTACGTGCTGCGGATCCCGCTACCCTCAGTCCGATTCG
Found at i:17790119 original size:26 final size:26
Alignment explanation
Indices: 17790068--17790120 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17790058 CTGGTCTGAT
*
17790068 CTTAGACTAGGAATGAAGACCATATG
1 CTTAGACTAGGAATGAACACCATATG
* * *
17790094 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCATATG
17790120 C
1 C
17790121 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCATATG
Found at i:17790275 original size:26 final size:26
Alignment explanation
Indices: 17790246--17790296 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17790236 TCGGTCGAAT
* *
17790246 CTTAGACTGGGATTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17790272 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17790297 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17791162 original size:26 final size:26
Alignment explanation
Indices: 17791126--17791176 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17791116 TCGATCCAAT
17791126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17791152 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17791177 AATTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17791798 original size:26 final size:26
Alignment explanation
Indices: 17791760--17791832 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
17791750 TCTGATCTTT
17791760 GACTGGG-TATGAACTTCGTATGCTTA
1 GACTGGGAT-TGAACTTCGTATGCTTA
17791786 GACTGGGATTGAAC-TCTGTATGCTTA
1 GACTGGGATTGAACTTC-GTATGCTTA
*
17791812 GACTGGGAATGAACTTCGTAT
1 GACTGGGATTGAACTTCGTAT
17791833 AACTAAGTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
25 2 0.05
26 38 0.88
27 3 0.07
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
GACTGGGATTGAACTTCGTATGCTTA
Found at i:17792709 original size:26 final size:26
Alignment explanation
Indices: 17792680--17792732 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17792670 CTGGTTCGAT
* *
17792680 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17792706 CTTAGTCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17792732 C
1 C
17792733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17792888 original size:26 final size:26
Alignment explanation
Indices: 17792859--17792909 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17792849 CTGGTCTGAT
*
17792859 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17792885 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17792910 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17792977 original size:179 final size:179
Alignment explanation
Indices: 17792661--17793070 Score: 464
Period size: 179 Copynumber: 2.3 Consensus size: 179
17792651 TGCTACCGTA
* * * *
17792661 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGTCTAGGAATGAACTC
1 ACCCTCGATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
** * **
17792726 CGTATGCCTAAGTCAACCCATGAAACGACCGTGCGGCCGCTCAGTAGGCCAAAGAGGCAAGATGC
66 CGTATAACTAAGTCAACCCATGAAACGACCATGCGGCCGCTCAACAGGCCAAAGAGGCAAGATGC
* *
17792791 GCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTAATCCTGCT
131 ACAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTAATCCTGCT
* *
17792840 ACCCTCGATCTGG-TCTGATCTTAGGCTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCGATCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
* * * * * * * * *
17792904 TCGTATAACTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCGGCCAGAGGGGTAGGATG
65 CCGTATAACTAAGTCAACCCATGAAACGACCATGCGGCCGCTCAACAGGCCAAAGAGGCAAGATG
* * * **
17792969 CACAAGCCGGGGATCGACCGGGTCTCCCTCTGCGTGCTACCGATCCTGCT
130 CACAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTAATCCTGCT
* * *
17793019 GCCACAACCCTCAGA-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 ------ACCCTC-GATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGC
17793071 CTAAGCCAAC
Statistics
Matches: 191, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
178 2 0.01
179 149 0.78
185 37 0.19
186 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (179 bp):
ACCCTCGATCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
CGTATAACTAAGTCAACCCATGAAACGACCATGCGGCCGCTCAACAGGCCAAAGAGGCAAGATGC
ACAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCTAATCCTGCT
Found at i:17793792 original size:26 final size:26
Alignment explanation
Indices: 17793756--17793808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17793746 CCCGTACGAT
*
17793756 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17793782 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17793808 C
1 C
17793809 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17793977 original size:26 final size:26
Alignment explanation
Indices: 17793935--17793985 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17793925 CCAGTCCAAT
17793935 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17793961 CTTAGACTGGGAGTGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
17793986 AACTAAGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17794728 original size:26 final size:26
Alignment explanation
Indices: 17794689--17794739 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17794679 CCGGTCTGAT
* *
17794689 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
17794715 CTTAGACTGAGAATGAACTCTGTAT
1 CTTAGACTGAGAATGAACTCTGTAT
17794740 AACTAGGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:17794995 original size:153 final size:153
Alignment explanation
Indices: 17794715--17795200 Score: 517
Period size: 153 Copynumber: 3.1 Consensus size: 153
17794705 ACTTTGTATG
* * * * * * *
17794715 CTTAGACTGAGAATGAACTCTGTATAACTAGGTCAACCCGCGAAATGAGCGGACAAGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGT
* * * * * *
17794780 CGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATGGATCGGGTCCCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAACCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCC
17794845 TGCTACCCTCGGTTCCGTCTGAT
131 TGCTACCCTCGGTTCCGTCTGAT
* * **
17794868 CTTAGACTGGGAATGAACTCCGTATAAGTAAGTCAACCCACGAAACGAGCGTCCAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGT
* * * * ** *
17794933 CGACCAGAGTGGCAGGATGTGTAAATCGGGGATCGATCGAGTCTTCCGCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAACCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCC
*
17794998 TGCAACTGTAACCCTCGG-TCCGGTCCGAT
131 TG---C--T-ACCCTCGGTTCC-GTCTGAT
* ** * * * **
17795027 CTTAGACTGGGAATGAAC-CAAGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTC-CGTATAACTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAG
* ** *
17795091 TCGGCCAGAGGGGCAGGATGCGCATGCCGGGGATCAATCGAGTCCCCCTCTGCGTGCTGTCGATC
65 TCGGCCAGAGGGGCAGGATGCGTAAACCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATC
* * *
17795156 ATGCTACCCTCGGTACGGTCTGAT
130 CTGCTACCCTCGGTTCCGTCTGAT
*
17795180 CTTAGACTGGTAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
17795201 ATATGCTTAG
Statistics
Matches: 270, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
153 139 0.51
154 3 0.01
156 2 0.01
158 5 0.02
159 121 0.45
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (153 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGT
CGGCCAGAGGGGCAGGATGCGTAAACCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCCTCGGTTCCGTCTGAT
Found at i:17796104 original size:26 final size:26
Alignment explanation
Indices: 17796075--17796127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17796065 CCAGTCCGAT
17796075 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17796101 CTTAGACTTGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17796127 C
1 C
17796128 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17796304 original size:26 final size:26
Alignment explanation
Indices: 17796254--17796304 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17796244 CCGGTCTGAT
*
17796254 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
17796280 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACACCGTAT
17796305 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:17796406 original size:179 final size:179
Alignment explanation
Indices: 17796072--17796416 Score: 424
Period size: 179 Copynumber: 1.9 Consensus size: 179
17796062 GATCCAGTCC
* * * **
17796072 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCTTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * * **
17796137 CACATGAACTGAGCGAGCGAGCGCTCGATCGGCCAGAGGGGCAGGATGCGTTAGCCAGGGATCGA
66 CACACGAACTGAGCGAGCGAGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGA
* *
17796202 CTGAGTCCCCCTCTGCGTGCTGTCGATCCTGTTACCATCAGTCCGGTCT
131 CTGAGTCCCCCTCTGCGTACTGTCGATCCTGCTACCATCAGTCCGGTCT
* *
17796251 GATCTTAGACTGGGAATGAACACTGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
1 GATCTTAGACTAGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * * * * * *
17796316 CCCACGAAAC-GAGCGTGCGGGCGCTTAACCGGCTAGAGGGGCAGGATGTGCAAGCCGGGGATCG
66 CACACG-AACTGAGCGAGCGAGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCG
* * * * *
17796380 -GTCGGGTCTCTCTCTGTGTACTGTCGATCCTGCTACC
130 ACT-GAGTCCCCCTCTGCGTACTGTCGATCCTGCTACC
17796417 GCAACCCTTA
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
178 1 0.01
179 134 0.97
180 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (179 bp):
GATCTTAGACTAGGAATGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
CACACGAACTGAGCGAGCGAGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGA
CTGAGTCCCCCTCTGCGTACTGTCGATCCTGCTACCATCAGTCCGGTCT
Found at i:17797180 original size:26 final size:26
Alignment explanation
Indices: 17797151--17797203 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17797141 CCGGTTTGAT
17797151 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17797177 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17797203 C
1 C
17797204 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17798262 original size:26 final size:26
Alignment explanation
Indices: 17798222--17798272 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17798212 TAGGTCTGAT
*
17798222 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17798248 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
17798273 AATTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17799056 original size:898 final size:888
Alignment explanation
Indices: 17797324--17799280 Score: 2801
Period size: 898 Copynumber: 2.2 Consensus size: 888
17797314 CTTGGTCTGA
* * *
17797324 TCCGATCTTAGACTAGGAATGAACTCCGTGTACTTAGAGTGGGAATGAACTCCGTATAACTAAGT
1 TCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
** * * * * **
17797389 CAACCCACGAAACAAGCGTGCGTGTGCTCAACCGACCAGAAAGGCAGGATGCGTAAGTTGGGGAT
65 CAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGACCAGAAGGGCAGGATGCGTAAGCCGGGGAT
* * * * * * * * * *
17797454 CAGCTGGGTCTCCCTCTGTGTACTGCCAATCCTACTACAGCAACTCTCAATCTGGTTCGATCTTA
130 CATC-GGGTCTCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCAATCTTA
* * *
17797519 GACTGGAAATGAACTCCGTATGCCTAAGCCATCCGACGAAGGGCAGGCGGGCGCTACGTCGGCCA
194 GACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAGGGCAGGCGGGCACTACGTCGGCCA
* * *
17797584 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
259 GAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
17797649 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAACCTTCATG
324 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAACCTTCATG
* * *
17797714 TGAAGTTTCATGGAAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCG
389 TGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTAAGGTTCG
* * * * *
17797779 GGATTTTTTAAACTTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
454 AGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAAACATAATCCTTGTATT
* *
17797844 GTTTTAGAAATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGTTTTTGTGACCTTTTG
519 GTTTTAGAAATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* * *
17797909 AAAAACGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
584 AAAAACGTGTCCCCATTTAAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAACCTCAAATG
*
17797974 CTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
649 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
17798039 ACCAGCACCCATCGCACATCATGCGCGCACACCCCCCGGCCCCCCCCAAACGTCGGAACCCCAAT
714 ACAAGCACCCATCCCACATCATGCGCGCACACCCCCCAG-CCCCCCCAAACGTCGGAACCCCAAT
* * *
17798104 GCTGTCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAAATGCGGCAC
778 GCCGTCGGTCAAGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGC-AAAAAAAATGCCGCAC
* * * *
17798169 CAGTACATGCCCGAGCCTAGCATGTGTTACCGCAACCCTCAGTTAGG
842 CAGCACATGCCCAAGCCCAGCATGTGTTACCGCAACCCTCAGTCAGG
* * *
17798216 TCTGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATAATTAAGT
1 TCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
* ** * * * *
17798281 CAACTCACGAAATGAGCGTGTAAGCGCTCAGCCGGCCAGACGGGCAGGATGCATAAGCCGGGTAT
65 CAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGACCAGAAGGGCAGGATGCGTAAGCCGGGGAT
* *
17798346 CGATCGGGTCTCCTTCTGTGTGCTACCGATCCTGCTACCGTAACCCTCAATCCGGTCCAATCTTA
130 C-ATCGGGTCTCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCAATCTTA
* *
17798411 GACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGCACTGGCGGGCACTACGT
194 GACTGGAAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-G-G-GCA--GGCGGGCACTACGT
**
17798476 CGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTATTCACATCT
253 CGGCCAGAGAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17798541 TCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
318 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAACC
* *
17798606 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTAC
383 TTCATGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTAA
* *
17798671 GGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTTGGCCCTAAACTTGGTAAACATAATCC
448 GGTTCGAGATTTTTTAAAATTTTTTTAGAAGGA-GTTTTGGCCCCAAACTTGGTAAACATAATCC
* ** * *
17798736 TTGTATT-TTTGTTGGCATGCAC-AAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
512 TTGTATTGTTT-TAGAAATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * *
17798799 ACCATTTGAAAAATGTGTCCTCATTTCAA-ACACTTTAATGCCTACTGGTAGCAAACCTGTAAAA
576 ACCATTTGAAAAACGTGTCCCCATTT-AAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAA
17798863 CCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
640 CCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
17798928 GGGCCAAGTACAAGCACCCATCCCACATTATGTGCGCCCACCCCCCAG-CCCCCCAATCAC-T-G
705 GGGCCAAGTACAAGCACCCATCCCACATCATGCGCGCACACCCCCCAGCCCCCCCAA--ACGTCG
*
17798990 GAACCCCAATGCCGTCGGTCAAGTTCTCTGACGATGCTCCGATGATGGTGCCCCGGGCGAAAAAA
768 GAACCCCAATGCCGTCGGTCAAGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGC-AAAAAA
* *
17799055 AATGCCGCACCAGCACATGCCCAAGCCCAGCATGTGTTGCCGCAACCCTCAGTCCGG
832 AATGCCGCACCAGCACATGCCCAAGCCCAGCATGTGTTACCGCAACCCTCAGTCAGG
**
17799112 TCCGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
* * * * *
17799177 CAACCCATGAAATGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGAT
65 CAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGACCAGAAGGGCAGGATGCGTAAGCCGGGGAT
* * * *
17799242 CAGTTGGGTCCCCCTCTGTGTGCTATCGATCCTGTTACC
130 CA-TCGGGTCTCCCTCTGTGTGCTACCGATCCTGCTACC
17799281 CTCGGTCCAG
Statistics
Matches: 940, Mismatches: 111, Indels: 24
0.87 0.10 0.02
Matches are distributed among these distances:
891 2 0.00
892 190 0.20
893 4 0.00
894 1 0.00
895 2 0.00
896 268 0.29
897 1 0.00
898 430 0.46
899 42 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
TCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTC
AACCCACGAAATGAGCGTGCGAGCGCTCAGCCGACCAGAAGGGCAGGATGCGTAAGCCGGGGATC
ATCGGGTCTCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCAATCCGGTCCAATCTTAGA
CTGGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAGGGCAGGCGGGCACTACGTCGGCCAGA
GAGACGGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAACCTTCATGTG
AAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTAAGGTTCGAG
ATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAAACATAATCCTTGTATTGT
TTTAGAAATGAACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
AAACGTGTCCCCATTTAAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAACCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
AAGCACCCATCCCACATCATGCGCGCACACCCCCCAGCCCCCCCAAACGTCGGAACCCCAATGCC
GTCGGTCAAGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGGCAAAAAAAATGCCGCACCAGC
ACATGCCCAAGCCCAGCATGTGTTACCGCAACCCTCAGTCAGG
Found at i:17799147 original size:26 final size:26
Alignment explanation
Indices: 17799118--17799170 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17799108 CCGGTCCGAT
*
17799118 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17799144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17799170 C
1 C
17799171 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17801077 original size:26 final size:26
Alignment explanation
Indices: 17801041--17801091 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17801031 CGGTCTGATC
*
17801041 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
17801067 TTAGAATGGGAATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
17801092 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:17801194 original size:179 final size:179
Alignment explanation
Indices: 17800887--17801738 Score: 1001
Period size: 179 Copynumber: 4.8 Consensus size: 179
17800877 CCGATCTGAT
* * * *
17800887 CTTAGACTGGGAATGAACTCCGTATAACTAAGTTAACCCACGAAACGAGTGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA-T
* * * * *
17800952 -CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTTTACGTGCTGCCGATC
65 CCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
17801016 CTGCTACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
130 CTGCTACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
17801066 GTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCCCATC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATC
* * * * * * * * *
17801131 CAGCTAGAAGGGTAGGATGCGCAAGCCGGGGATTGATCGGGTCCCCCTGTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
17801196 TACTACCCTCGG-TCCATTTCGATCTTAGACTGGGAATGAACTCCGTATG
131 TGCTACCCTCGGTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17801245 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAATCAATGAAACGAGCATACGGGCGCTAAAT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-CAT
* * *
17801310 -CGGCCAGAGGGGCAGGATGCATAAGTCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** ** * *
17801374 CTGCTGTCGCAAC-CCTCGATCCGATCTTAGACTGAGAATGAACTACGTATG
130 CTGCT-AC-CCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
17801425 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGTTCAAC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATC
* * *
17801490 CGACCAGAGGGGCAGGATGCATAAGTCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
17801555 TGCTACCCTCTGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATG
131 TGCTACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
17801604 CTTAGACTAGGAATAAACTCTGTATAACTAAGTCAACCCACGAAACGAGCGTGTGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATC
* ** * *
17801669 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGACCGGGTCTCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
17801734 TGCTA
131 TGCTA
17801739 TCACAACCCT
Statistics
Matches: 565, Mismatches: 100, Indels: 16
0.83 0.15 0.02
Matches are distributed among these distances:
178 5 0.01
179 406 0.72
180 149 0.26
181 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (179 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCATC
CGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17801255 original size:26 final size:26
Alignment explanation
Indices: 17801219--17801269 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17801209 CCATTTCGAT
17801219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17801245 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17801270 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17801438 original size:26 final size:26
Alignment explanation
Indices: 17801399--17801451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17801389 TCGATCCGAT
17801399 CTTAGACTGAGAATGAACTACGTATG
1 CTTAGACTGAGAATGAACTACGTATG
* *
17801425 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTACGTATG
17801451 C
1 C
17801452 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTACGTATG
Found at i:17801553 original size:359 final size:357
Alignment explanation
Indices: 17800887--17801754 Score: 1121
Period size: 359 Copynumber: 2.4 Consensus size: 357
17800877 CCGATCTGAT
* *
17800887 CTTAGACTGGGAATGAACTCCGTATAACTAAGTTAACCCACGAAACGAGTGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * *
17800952 CGGCCAGAGGGGCAGGATGCGCAAG-CCAGGGATCGGTCGGGTCCCCCTTTACGTGCTGCCGATC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGA-GGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATC
* ** ** * * * * *
17801016 CTGCTACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGGTTAGAATGGGAATG
130 CTGCTTCCAAC-CCTCGATCCGATCTTAGACTGAGAATGAACTACGTATGCTTAGAATGGGAATG
* * * * *
17801081 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCCCATCCAGCTAGAAGGGTAG
194 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAACCAGCCAGAAGGGCAG
* * *
17801146 GATGCGCAAGCCGGGGATTGATCGGGTCCCCCTGTGCGTGCTGCCGATCCTACTACCCTCGGTCC
259 GATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTCC
*
17801211 -ATTTCGATCTTAGACTGGGAATGAACTCCGTATG
324 GA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17801245 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAATCAATGAAACGAGCATACGGGCGCTAAAT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
*
17801310 CGGCCAGAGGGGCAGGATGCATAAGTCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATCC
*
17801375 TGCTGTCGCAACCCTCGATCCGATCTTAGACTGAGAATGAACTACGTATGCTTAGACTGGGAATG
131 TGCT-TC-CAACCCTCGATCCGATCTTAGACTGAGAATGAACTACGTATGCTTAGAATGGGAATG
* * ** *
17801440 AACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGTTCAACC-GACCAGAGGGGCA
194 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAACCAG-CCAGAAGGGCA
* * * * * *
17801504 GGATGCATAAGTCGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCTACCCTCTGTC
258 GGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTC
* *
17801569 CGATCCGATCTTAGATTGGGAATGAACTCTGTATG
323 CGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
17801604 CTTAGACTAGGAATAAACTCTGTATAACTAAGTCAACCCACGAAACGAGCGTGTGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
** *
17801669 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGACCGGGTCTCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATCC
*
17801734 TGCTATCACAACCCTCAATCC
131 TGCT-TC-CAACCCTCGATCC
17801755 AGTCTGATCT
Statistics
Matches: 438, Mismatches: 67, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
358 118 0.27
359 317 0.72
360 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (357 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCGATCC
TGCTTCCAACCCTCGATCCGATCTTAGACTGAGAATGAACTACGTATGCTTAGAATGGGAATGAA
CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCCCAACCAGCCAGAAGGGCAGGA
TGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTCCGA
TCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17801616 original size:26 final size:26
Alignment explanation
Indices: 17801578--17801628 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17801568 CCGATCCGAT
* * *
17801578 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
17801604 CTTAGACTAGGAATAAACTCTGTAT
1 CTTAGACTAGGAATAAACTCTGTAT
17801629 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:17802501 original size:26 final size:26
Alignment explanation
Indices: 17802472--17802524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17802462 TCGGTCTGAT
*
17802472 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17802498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17802524 C
1 C
17802525 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17803566 original size:26 final size:26
Alignment explanation
Indices: 17803537--17803589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17803527 CTGGTCCGAT
* *
17803537 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
17803563 CTTAGATTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17803589 C
1 C
17803590 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17803752 original size:26 final size:26
Alignment explanation
Indices: 17803716--17803766 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17803706 CCGGTCCGAT
*
17803716 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17803742 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
17803767 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17805689 original size:26 final size:26
Alignment explanation
Indices: 17805653--17805705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17805643 CCGGTCCGAT
*
17805653 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
17805679 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
17805705 C
1 C
17805706 CTAAATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:17805862 original size:26 final size:26
Alignment explanation
Indices: 17805826--17805876 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17805816 CCAGTCTGAT
17805826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17805852 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17805877 AAATAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17806760 original size:26 final size:26
Alignment explanation
Indices: 17806722--17806774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17806712 CCGGTCCGAT
*
17806722 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
*
17806748 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
17806774 C
1 C
17806775 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCATATG
Found at i:17807820 original size:26 final size:26
Alignment explanation
Indices: 17807782--17807834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17807772 CTGATCTGAT
* *
17807782 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17807808 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17807834 C
1 C
17807835 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17807998 original size:26 final size:26
Alignment explanation
Indices: 17807961--17808011 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17807951 CTGGCCCGAT
17807961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17807987 CTTAGA-TAGGGAATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
17808012 AACTAGGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17808115 original size:179 final size:179
Alignment explanation
Indices: 17807779--17808115 Score: 505
Period size: 179 Copynumber: 1.9 Consensus size: 179
17807769 GGTCTGATCT
**
17807779 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATAACTAAGTCAA
* *
17807844 CCCATGAAACGAGCGTACGGGCGCTCAGCTGGCCAAAGGGGCAGGATACGCAAGCCAAGGATCGG
66 CCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAAAGGGGCAGGATACGCAAGCCAAGGATCGG
* * *
17807909 TCGGGTCCCCCTCTGCATGCGGCCGATCCTGCTACCCTCGGTCTGGCCC
131 CCGAGTCCCCCTCTACATGCGGCCGATCCTGCTACCCTCGGTCTGGCCC
* *
17807958 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TAGGGAATGAACTCCGTATAACTAGGTCA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCATATAACTAAGTCA
** * *
17808022 ACCCATGAAACGAACGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAAGGATCG
65 ACCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAAAGGGGCAGGATACGCAAGCCAAGGATCG
* * * *
17808087 GCCGAGTCTCCTTCTACGTGCTGCCGATC
130 GCCGAGTCCCCCTCTACATGCGGCCGATC
17808116 TTAATGTCAT
Statistics
Matches: 140, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
178 2 0.01
179 138 0.99
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (179 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATAACTAAGTCAA
CCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAAAGGGGCAGGATACGCAAGCCAAGGATCGG
CCGAGTCCCCCTCTACATGCGGCCGATCCTGCTACCCTCGGTCTGGCCC
Found at i:17809711 original size:26 final size:26
Alignment explanation
Indices: 17809659--17809711 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809649 CTGGTTCGAT
*
17809659 CTTAGACTGGGAATGAACACTGCATG
1 CTTAGACTGGGAATGAACACCGCATG
* *
17809685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGCATG
17809711 C
1 C
17809712 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGCATG
Found at i:17809940 original size:179 final size:179
Alignment explanation
Indices: 17809640--17809986 Score: 480
Period size: 179 Copynumber: 1.9 Consensus size: 179
17809630 TGCTGCCGCA
*
17809640 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACACTGCATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACACTGCACGCTTAGACTGGGAATGAACTC
** * * *
17809705 CGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGGCACTCAGCCGCCCAGAGGGGTAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGGGGTAGGATGC
* **
17809770 GTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGATTTTGCT
131 GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTATCGATTTTGCT
* * * *
17809819 ACCCTCGGTCTGGTTCGATCTTAGGCTGGGAATGAACTCTGTACGCTTAGATTGGGAATGAA-TG
1 ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACACTGCACGCTTAGACTGGGAATGAACT-
** * * *
17809883 TTGTATAACTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTAGGATG
65 CCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGGGGTAGGATG
* * * *
17809948 TGCAAGTCGGGGATCGACCGGGTCTCCCTCTGCGTGCTA
130 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTA
17809987 CAGATCCTAC
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
178 1 0.01
179 144 0.99
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (179 bp):
ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACACTGCACGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGGGGTAGGATGC
GCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTATCGATTTTGCT
Found at i:17812856 original size:26 final size:26
Alignment explanation
Indices: 17812820--17812872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17812810 CCGGTCCAAT
* * *
17812820 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17812846 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17812872 C
1 C
17812873 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17813036 original size:26 final size:26
Alignment explanation
Indices: 17812999--17813049 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17812989 CTGATATCAT
* * *
17812999 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACCGGGAATAAACTTCGTATG
17813025 CTTAGACCGGGAATAAACTTCGTAT
1 CTTAGACCGGGAATAAACTTCGTAT
17813050 AACTATGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACCGGGAATAAACTTCGTATG
Found at i:17813101 original size:179 final size:179
Alignment explanation
Indices: 17812818--17813146 Score: 446
Period size: 179 Copynumber: 1.8 Consensus size: 179
17812808 GTCCGGTCCA
* * * **
17812818 ATCTTAGACTGGGAATGAAGTCTGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACCGGGAATAAACTCCGTATAACTAAGTCAAC
* * * * *
17812883 CCACGAAATCAATGTGTAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGAT
66 CCACGAAAACAACGTGTAGGCGCTCAACCGGCCAGAGGGGCAAGATGCACAACCCGAGGATCGAT
*
17812948 CGGGTCCCCCTCTGCTTGCTATCGATCCTGCTACCCTCGGTCTGATATC
131 CGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCCTCGGTCTGATATC
* * * *
17812997 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGACCGGGAATAAACTTCGTATAACTATGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACCGGGAATAAACTCCGTATAACTAAGTCAAC
* ** *
17813062 CCAC-AAAACGAGCGTG-AGGGCGCTCAACCGGCCAGAGGGGCAAGATGCGTAACCCGGGGATCG
66 CCACGAAAAC-AACGTGTA-GGCGCTCAACCGGCCAGAGGGGCAAGATGCACAACCCGAGGATCG
*
17813125 ATCGGGTCTCCCTCTGCGTGCT
129 ATCGGGTCCCCCTCTGCGTGCT
17813147 GCCAATCTTG
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
178 5 0.04
179 123 0.96
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (179 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACCGGGAATAAACTCCGTATAACTAAGTCAAC
CCACGAAAACAACGTGTAGGCGCTCAACCGGCCAGAGGGGCAAGATGCACAACCCGAGGATCGAT
CGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCCTCGGTCTGATATC
Found at i:17813933 original size:26 final size:26
Alignment explanation
Indices: 17813897--17813947 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17813887 GGTCCAATCC
17813897 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17813923 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17813948 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17815406 original size:158 final size:151
Alignment explanation
Indices: 17815053--17815420 Score: 488
Period size: 151 Copynumber: 2.4 Consensus size: 151
17815043 ACTACGTATG
*
17815053 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
17815118 CGGTTAGAGGGGCAGGATGCGCAAGTTGGGGATCGGTCGGGTCCCCCTCTACGCTGTGGATCCTT
66 CGGCTAAAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGCTGTCGATCCTT
17815183 CTACCCTCGATCCGGTCTGAT
131 CTACCCTCGATCCGGTCTGAT
*** *
17815204 CTTAGACTGGGAATGAACTTCGTACAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17815269 CGGCTAAAGGGGCAGGATGTGCAAGTCGGGGATCGATC-GGTCTCCCTCTACATGCTGTCGATCC
66 CGGCTAAAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTAC--GCTGTCGATCC
*
17815333 TGCTACCGTAACCCTC-AGTCTGGTCTGAT
129 T--T--C-T-ACCCTCGA-TCCGGTCTGAT
* * * *
17815362 CTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
17815421 GGCAATATGC
Statistics
Matches: 188, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
150 12 0.06
151 93 0.49
152 11 0.06
154 1 0.01
156 1 0.01
157 2 0.01
158 68 0.36
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.21
Consensus pattern (151 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCTAAAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGCTGTCGATCCTT
CTACCCTCGATCCGGTCTGAT
Found at i:17816111 original size:26 final size:26
Alignment explanation
Indices: 17816075--17816127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17816065 CTGATCTGAT
*
17816075 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
*
17816101 CTTAGGCTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
17816127 C
1 C
17816128 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:17817178 original size:26 final size:26
Alignment explanation
Indices: 17817149--17817199 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817139 CCGGTCCGAT
* *
17817149 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17817175 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17817200 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17818071 original size:26 final size:26
Alignment explanation
Indices: 17818042--17818094 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17818032 CTGGTCCGAT
17818042 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17818068 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17818094 C
1 C
17818095 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17818437 original size:159 final size:152
Alignment explanation
Indices: 17818068--17818425 Score: 448
Period size: 152 Copynumber: 2.3 Consensus size: 152
17818058 ACTCCGTATG
*
17818068 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGGC-CTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTG-GGGGCGCTCAG
* * *
17818132 CCGGCTAGAGGGGCAGGATGCGCAAGCCACTAATCGGCGGGTCCCCCTCTACGTGCTGCCAATCC
65 CCGGCCAGAGGGGCAAGATGCGCAAGCCACGAATCGGCGGGTCCCCCTCTACGTGCTGCCAATCC
**
17818197 TGCTACCCTCGGTCCAGTCTGAT
130 TGCTACCCTCGGTCCAGTCCAAT
** * * * *
17818220 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGGGGGCGCTCAGC
* * * * *
17818285 CGGCCAGAGGGGTAAGATGCGCAAGCCAGGGATCGGTCGGGTCTCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCAAGATGCGCAAGCCACGAATCGG-CGGGTCCCCCTCTACGTGCTGCCAATCC
*
17818350 TGCTACCGCAACCTTCGGTCCGGTCCAAT
130 TGCTA---C--CC-TCGGTCCAGTCCAAT
** *
17818379 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACTGACAAAACG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACG
17818426 GGTAGGTGGG
Statistics
Matches: 173, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
151 4 0.02
152 83 0.48
153 31 0.18
156 1 0.01
158 2 0.01
159 52 0.30
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (152 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGGGGGCGCTCAGC
CGGCCAGAGGGGCAAGATGCGCAAGCCACGAATCGGCGGGTCCCCCTCTACGTGCTGCCAATCCT
GCTACCCTCGGTCCAGTCCAAT
Found at i:17819128 original size:26 final size:26
Alignment explanation
Indices: 17819092--17819144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17819082 CTTGTCTGAT
*
17819092 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17819118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17819144 C
1 C
17819145 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17824064 original size:20 final size:20
Alignment explanation
Indices: 17824039--17824084 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
17824029 ATGACTGCAG
17824039 TGGTGCACTGCTTGCGCACT
1 TGGTGCACTGCTTGCGCACT
17824059 TGGTGCACTGCTTGCGCACT
1 TGGTGCACTGCTTGCGCACT
17824079 TGGTGC
1 TGGTGC
17824085 CATTACCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.09, C:0.28, G:0.33, T:0.30
Consensus pattern (20 bp):
TGGTGCACTGCTTGCGCACT
Found at i:17826769 original size:26 final size:26
Alignment explanation
Indices: 17826740--17826790 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17826730 CTGGTCCGAT
* *
17826740 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
*
17826766 CTTAGACTAGAAATGAACTTCGTAT
1 CTTAGACTAGAAATGAACTCCGTAT
17826791 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:17826896 original size:179 final size:181
Alignment explanation
Indices: 17826587--17826950 Score: 471
Period size: 179 Copynumber: 2.0 Consensus size: 181
17826577 CCGATCCAAT
* * ** * *
17826587 CTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAACCCATGAAACGAACGTGTGGGCGCTCAAC
1 CTTAGACTAGAAATGAACTTCGTATAACTAAGTCAACCAATGAAACGAACGTGCGGGCGCTCAAC
* * * * *
17826652 CGGCCAGAGGGGCAGGATGCGCAAGTTGGGGATCGACCGAGTCCCCCTCTGTGTGCTATCGATCC
66 CAGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
17826717 T-GT-TACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
131 TACTCAACCCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTATG
* *
17826766 CTTAGACTAGAAATGAACTTCGTATAACTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGAAATGAACTTCGTATAACTAAGTCAACCAATGAAACGAACGTGCGGGCGCTCAAC
* * * * *
17826831 CAGCCAGAGGGGCAAGATGCGTATGCTGGGGATCGACCGGGTCTCCCTCTGCGTGCTGCCGATCC
66 CAGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
17826896 TACTACCACAACCCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTATG
131 TACT----CAACCCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTATG
17826951 ACTAAGCCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
179 113 0.72
180 1 0.01
185 42 0.27
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (181 bp):
CTTAGACTAGAAATGAACTTCGTATAACTAAGTCAACCAATGAAACGAACGTGCGGGCGCTCAAC
CAGCCAGAGGGGCAAGATGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCC
TACTCAACCCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTATG
Found at i:17827673 original size:26 final size:26
Alignment explanation
Indices: 17827637--17827689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17827627 CCGGTCCAAT
*
17827637 CTTAGACTGGGAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
17827663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17827689 C
1 C
17827690 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17828024 original size:159 final size:152
Alignment explanation
Indices: 17827663--17828024 Score: 472
Period size: 152 Copynumber: 2.3 Consensus size: 152
17827653 ACTTCGTATG
17827663 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
17827728 CGGCCAGAGGGGCAGGATACACAAGCCAGGGATCGGTCGGGTCCCCTCTGTGTGCTGCCGATCCT
66 CGGCCAGAGGGGCAAGATACACAAGCCAGGGATCGGTCGAGTCCCCTCTGTGTACTGCCGATCCT
*
17827793 GCTACCCTTGGGCCGATCCAAT
131 GCAACCCTTGGGCCGATCCAAT
** * * * *
17827815 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17827880 CGGCCAGAGGGGCAAGATGCGCAAGCCTGGGATCGGTCGAGTCTCGCTCTACGTGCTACTGATCC
66 CGGCCAGAGGGGCAAGATACACAAGCCAGGGATCGGTCGAGTC-CCCTCT--GTG-TACTG--CC
* * * *
17827945 TACTGCTGCAACCCTTGGTCCGGTCCAAT
125 GA-TCCTGCAACCCTTGGGCCGATCCAAT
* * *
17827974 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
17828025 GACGGGTGGG
Statistics
Matches: 178, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
152 97 0.54
153 5 0.03
155 3 0.02
156 4 0.02
158 3 0.02
159 66 0.37
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (152 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAAGATACACAAGCCAGGGATCGGTCGAGTCCCCTCTGTGTACTGCCGATCCT
GCAACCCTTGGGCCGATCCAAT
Found at i:17828711 original size:26 final size:26
Alignment explanation
Indices: 17828682--17828734 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17828672 CCAGTCCGAT
17828682 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17828708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17828734 C
1 C
17828735 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17829609 original size:26 final size:26
Alignment explanation
Indices: 17829573--17829625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17829563 CCGATGAGAT
17829573 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
17829599 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
17829625 C
1 C
17829626 CCAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:17829765 original size:891 final size:886
Alignment explanation
Indices: 17827815--17829778 Score: 2654
Period size: 891 Copynumber: 2.2 Consensus size: 886
17827805 CCGATCCAAT
** *
17827815 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAA-AAGCGTGCGGGCGCTCAGT
* * * * * * * *
17827880 CGGCCAGAGGGGCAAGATGCGCAAGCCTGGGATCGGTCGAGTCTCGCTCTACGTGCTACTGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT-C
17827945 TACTGCTGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGCCA
129 T--TGCT---ACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCTGTATGCCTAAGCCA
* * * *
17828009 ACCGATGAAACGAGCGGACGGGTGGGCACTACGCCGGTCAGAGAGAGACGGGATGCGCAAGCAGT
189 ACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGTCACAGAGAGACAGGATGCGCAAGCAGT
* ** ** * *
17828074 GGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTGTATTTCTGTCATGCCAATGCCTTTTT
254 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAACGCCATTTT
*
17828139 TATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACT
319 TATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAACACGACT
* ** *
17828204 CGTTTTCTGTTTTTCACGATTTTTGAAACTTTTTATGGTTCTGGATTTTTTAAAATTTTTTTAGA
384 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTAGA
* * * *
17828269 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGTATGCCCAAAATAAT
449 AGGAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAAT
* **
17828334 TCAGCCAAAAAATCGAAGTTTACAAGATTTTTTGACAATTTCAAAAAAGTGTCCCCATTTCAGAC
514 TCAGCCAAAAAATCGAAGTGTACAAGATTTTGAGACAATTTCAAAAAAGTGTCCCCATTTCAGAC
* *
17828399 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
579 ACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
17828464 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTACCAGCACCCATCACACATCATGTGCGCAC
644 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTACCAGCACCCATCACACATCATGTACGCAC
* * * * * *
17828529 ACCCCCCGGCCAAGCCCAATTGCCGTAACCCCAATGTTGCCGGTCAAGTTCTCCGGTGATGATCC
709 ACCCCCCGACCAACCCCAATCGCCGGAACCCCAATGCTGCCGGTCAAGTTCTCCAGTGATGATCC
17828594 GACGATAGTACCCCGGGCGAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
774 GACGATAGTACCCCGGGCGAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGC
* *
17828659 GGCAACCCTCGGACCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 -GCAACCCTCGGACCAGTCAGATCTTAGACTGGGAATGAACTCCCTATG
* * *
17828708 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAAAGAGCGTGTGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAAA-AGCGTGCGGGCGCTCAGT
* * * * *
17828773 CGACCAGAGGGGCAGGATGCGCAAGCTAGGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * ** * *
17828838 TACTACCCTCGGTTCAAT-CAGATCTTAGACTGGGAATGAACTTC-GTGTGCCTAAGCCAATCGA
130 TGCTACCCTTGGTCCGGTCCA-ATCTTAGACTGGGAATGAACTTCTGTATGCCTAAGCCAACCGA
* * *
17828901 CGAAACGAGCGGACGGGCGGGTATTACGCCGG-C-CAGAGAGACAGGATGCGCAAGCCGTGGATC
194 CGAAACGAGCGGACGGGCGGGCACTACGCCGGTCACAGAGAGACAGGATGCGCAAGCAGTGGATC
* *
17828964 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TCACCGTGCGAACGCCATTTTTATG
259 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACCATGCCAACGCCATTTTTATG
* * *
17829028 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAACACGACTCGTT
323 GCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAACACGACTCGTT
*
17829093 TTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTAGAAGGA
388 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTAGAAGGA
*
17829158 GGTTTGGCCCCAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
453 GGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAG
* * * *
17829222 CTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
518 CCAAAAAATCGAAGTGTACAAGATTTTGAGACAATTTCAAAAAAGTGTCCCCATTTCAGACACTT
*
17829287 TAATGGCTACTGACAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
583 TAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
** *
17829352 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCGCATCATGTACG
648 GTTTGATGAGGGATAGGGGGCCAATAT-------AAGTACCAGCACCCATCACACATCATGTACG
* * ** * * *
17829417 CACACCCCCCCGACC-CCCCCAATCGTCGGAACCTTAATGCTGTCGGTCAGGTTCTTCAGTGATG
706 CACA-CCCCCCGACCAACCCCAATCGCCGGAACCCCAATGCTGCCGGTCAAGTTCTCCAGTGATG
* * * * * * * * *
17829481 CTCCGATGATGGTGCCTCGGGCGAAAAAACATGTGGCACTAGCACATGCCCGAGCCCAGCATGTG
770 ATCCGACGATAGTACCCCGGGCGAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* *
17829546 CTGC-CATAGCCCTCGGTCC-GATGAGATCTTAGACTGGGAATGAACTCCCTATG
835 CTGCGCA-A-CCCTCGGACCAG-TCAGATCTTAGACTGGGAATGAACTCCCTATG
* * * * * *
17829599 CTTAGATTGGGAATGAACTCCGTATGCCCAAGTCGACCCACGAAACAAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAA-AAGCGTGCGGGCGCTCAGT
* * * * * *
17829664 CGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTTCTGCCGATCT
65 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* *
17829729 TGCTACCCTTGGTCCGGTCCACTCTTAGACTGGGAATGAAC-TCCGTATGC
130 TGCTACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCTGTATGC
17829779 TTAGACTGGG
Statistics
Matches: 930, Mismatches: 123, Indels: 38
0.85 0.11 0.03
Matches are distributed among these distances:
884 194 0.21
885 214 0.23
886 3 0.00
887 75 0.08
888 2 0.00
889 2 0.00
890 7 0.01
891 311 0.33
892 13 0.01
893 109 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAAAAGCGTGCGGGCGCTCAGTC
GGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTT
GCTACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCTGTATGCCTAAGCCAACCGACG
AAACGAGCGGACGGGCGGGCACTACGCCGGTCACAGAGAGACAGGATGCGCAAGCAGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAACGCCATTTTTATGGCT
TGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAACACGACTCGTTTTC
TATTTTTCACGATTTTCAAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTAGAAGGAGGT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCCA
AAAAATCGAAGTGTACAAGATTTTGAGACAATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCC
GACCAACCCCAATCGCCGGAACCCCAATGCTGCCGGTCAAGTTCTCCAGTGATGATCCGACGATA
GTACCCCGGGCGAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCGCAACCC
TCGGACCAGTCAGATCTTAGACTGGGAATGAACTCCCTATG
Found at i:17829781 original size:26 final size:26
Alignment explanation
Indices: 17829752--17829802 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17829742 CCGGTCCACT
17829752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17829778 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17829803 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17830679 original size:26 final size:26
Alignment explanation
Indices: 17830650--17830702 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830640 CCGGTCTGAT
* *
17830650 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17830676 CTTATACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17830702 C
1 C
17830703 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17833739 original size:26 final size:26
Alignment explanation
Indices: 17833661--17833732 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
17833651 CTGATCTGAT
17833661 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
17833687 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
17833713 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
17833733 CTTATGCCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:17833906 original size:25 final size:26
Alignment explanation
Indices: 17833869--17833918 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
17833859 AGTCCGATCA
* *
17833869 TAGATTGGGAATGAACTC-GTATGCT
1 TAGACTGGAAATGAACTCTGTATGCT
17833894 TAGACTGGAAATGAACTCTGTATGC
1 TAGACTGGAAATGAACTCTGTATGC
17833919 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCTGTATGCT
Found at i:17834199 original size:178 final size:177
Alignment explanation
Indices: 17833687--17834201 Score: 575
Period size: 178 Copynumber: 2.9 Consensus size: 177
17833677 ACTCTATATG
* *
17833687 CTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAA-TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *** * *
17833752 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCACAAGCCGTAAAATTGATT
65 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG-GGGATCGATC
* * * * * *
17833817 GGGTCCCCCTCTGCATGTTGTCGATCCTGCTACCCTCGGCCCAGTCCGAT
129 GGGT-CCCCTCTACGTGCTGCCGATCCTACTACCCTCGGCCCAGTCCCAT
* * * * *
17833867 CATAGATTGGGAATGAA-CTCGTATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAATC-CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
17833931 ACGAATCAAGCGTACGGGCGTTTAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCA
65 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCG
* * * * *
17833996 GGTCCTTCTCTATGTGCTGCCGATCCTACTACCCTCAG-TCTGATCCCAT
130 GGTCC-CCTCTACGTGCTGCCGATCCTACTACCCTCGGCCCAG-TCCCAT
* * **
17834045 CTTAGACTAGGAATGAATCCATATGTTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCA
1 CTTAGACTGGGAATGAATCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
17834110 CGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGCGGCAGGATGCCCAAGCCGGGGATCGGTCGG
66 CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGG
*
17834175 GTCTCCCTCTACGTGCTACCGATCCTA
131 GTC-CCCTCTACGTGCTGCCGATCCTA
17834202 TTGCCGCAAC
Statistics
Matches: 274, Mismatches: 56, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
177 4 0.01
178 166 0.61
179 89 0.32
180 15 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (177 bp):
CTTAGACTGGGAATGAATCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGG
GTCCCCTCTACGTGCTGCCGATCCTACTACCCTCGGCCCAGTCCCAT
Done.