Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 126 of 138
Found at i:17834969 original size:26 final size:26
Alignment explanation
Indices: 17834940--17834992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17834930 CCGGTCCGAT
*
17834940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17834966 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17834992 C
1 C
17834993 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17836040 original size:26 final size:26
Alignment explanation
Indices: 17836011--17836063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17836001 CTGATCCGAT
* *
17836011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATCAACTCCGTATG
17836037 CTTAGACGGGGAATCAACTCCGTATG
1 CTTAGACGGGGAATCAACTCCGTATG
17836063 C
1 C
17836064 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATCAACTCCGTATG
Found at i:17836413 original size:179 final size:180
Alignment explanation
Indices: 17835992--17836493 Score: 607
Period size: 179 Copynumber: 2.8 Consensus size: 180
17835982 TTCTGCCGCA
* * * *
17835992 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGGGGAATCAACTC
1 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * * * * **
17836057 CGTATGCCTAAGTCAAACCACGGAGCGAGCGTGCGGGCGCTCAGCCTCCCAGAGGGGTAGGATGC
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
* * *
17836122 GCAAGCC-GGGATC-AGCTGGGTCCCCCTCTACGTGATGCCAATCCTGCT
131 GTAAGCCGGGGATCGAGCTAGGTCCCCCTCTACGTGATACCAATCCTGCT
* * * *
17836170 ACCCTCAGTCTGGT-TCGATCTTAGATTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACT
1 ACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
17836234 CCGTATAACTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGCCGGCTAGAGGGGTAGCATG
65 CCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATG
* * * * *
17836299 CGTAAGCCGGGGATCGATC-AGGTCCCTCTCTGCGTGCTACCGATCCTGCT
130 CGTAAGCCGGGGATCGAGCTAGGTCCCCCTCTACGTGATACCAATCCTGCT
* ** * *
17836349 ACCCTCGGTCCGGTCTGATCTTCTACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTC
1 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
17836414 CGTATAACTAAGTCAACCCATGAAACAAACGTGCGGGCGCTTAGCCGACCAGAGGGGCAGGATGT
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
*
17836479 GTAAACCGGGGATCG
131 GTAAGCCGGGGATCG
17836494 GTCGAGTCTC
Statistics
Matches: 272, Mismatches: 48, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
178 114 0.42
179 155 0.57
180 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (180 bp):
ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
GTAAGCCGGGGATCGAGCTAGGTCCCCCTCTACGTGATACCAATCCTGCT
Found at i:17836512 original size:179 final size:178
Alignment explanation
Indices: 17835992--17836581 Score: 605
Period size: 179 Copynumber: 3.3 Consensus size: 178
17835982 TTCTGCCGCA
* * * *
17835992 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGGGGAATCAACTC
1 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * * * * **
17836057 CGTATGCCTAAGTCAAACCACGGAGCGAGCGTGCGGGCGCTCAGCCTCCCAGAGGGGTAGGATGC
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
* * * * * *
17836122 GCAAGCC-GGGATCAG-CTGGGTCCCCCTCTACGTGATGCCAATCCTGCT
131 GTAAGCCGGGGATCGGTC-GAGT-CCCTTCTGCGTGATACCAATCCTGCT
* * * *
17836170 ACCCTCAGTCTGGT-TCGATCTTAGATTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACT
1 ACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
17836234 CCGTATAACTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGCCGGCTAGAGGGGTAGCATG
65 CCGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATG
* * *
17836299 CGTAAGCCGGGGATCGATC-AGGTCCCTCTCTGCGTGCTACCGATCCTGCT
130 CGTAAGCCGGGGATCGGTCGA-GTCCCT-TCTGCGTGATACCAATCCTGCT
* ** * *
17836349 ACCCTCGGTCCGGTCTGATCTTCTACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTC
1 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * *
17836414 CGTATAACTAAGTCAACCCATGAAACAAACGTGCGGGCGCTTAGCCGACCAGAGGGGCAGGATGT
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
* * **
17836479 GTAAACCGGGGATCGGTCGAGTCTCCTTCTGCGT-ACTGCTGATCTTGCTGCT
131 GTAAGCCGGGGATCGGTCGAGTC-CCTTCTGCGTGA-TACCAATC---CTGCT
* * *
17836531 GCAACCTTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
1 ---ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
17836582 TAACCAACCG
Statistics
Matches: 337, Mismatches: 60, Indels: 23
0.80 0.14 0.05
Matches are distributed among these distances:
178 117 0.35
179 168 0.50
180 6 0.02
182 5 0.01
185 41 0.12
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (178 bp):
ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGTAGGATGC
GTAAGCCGGGGATCGGTCGAGTCCCTTCTGCGTGATACCAATCCTGCT
Found at i:17837286 original size:25 final size:26
Alignment explanation
Indices: 17837243--17837294 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
17837233 CTGGTTTCAT
17837243 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17837269 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17837294 C
1 C
17837295 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17837575 original size:177 final size:177
Alignment explanation
Indices: 17837228--17837576 Score: 434
Period size: 177 Copynumber: 2.0 Consensus size: 177
17837218 GTTGTAACCT
* *
17837228 TCGATCTGGTTTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTAT
1 TCGATCTGGTTTCATCCTAGACTGGGAATCAACTCCGTATGCTTAGACTGGAATGAACTCCGTAT
** * * * * *
17837293 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAGGCTAGAGGGGTAGGATGCGCAAG
66 AACTAAGTCAACCCACAAAACGAGCGCACGGGCGCTCAGCAGACCAGAGGGGCAGGATGCGCAAG
* * * * *
17837358 TCGGGGATCGACCGGGACCTCGTCTGCGTCCTATCGATCCTGCTACC
131 CCAGGGATCGACAGGGACCTCCTCTGCGTCCTACCGATCCTGCTACC
* * *
17837405 TCGATCTGGTTTGATCCTAGATTGGGAATCAACTTCGTATGCTTAGACTAGGAATGAACTCCGTA
1 TCGATCTGGTTTCATCCTAGACTGGGAATCAACTCCGTATGCTTAGACT-GGAATGAACTCCGTA
* * *
17837470 TAACTGAGTC-ACCCACAAAACGAGCGCGCGGGCGCTCAGTCA-ACCAGAGGGGCAGGATGCGTA
65 TAACTAAGTCAACCCACAAAACGAGCGCACGGGCGCTCAG-CAGACCAGAGGGGCAGGATGCGCA
* * * *
17837533 AGCCAGGGATCGGCAGGG-TCTCCCTTTGCGTGCTACCGATCCTG
129 AGCCAGGGATCGACAGGGACCT-CCTCTGCGTCCTACCGATCCTG
17837577 TTGCTGCAAC
Statistics
Matches: 145, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
176 2 0.01
177 119 0.82
178 24 0.17
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (177 bp):
TCGATCTGGTTTCATCCTAGACTGGGAATCAACTCCGTATGCTTAGACTGGAATGAACTCCGTAT
AACTAAGTCAACCCACAAAACGAGCGCACGGGCGCTCAGCAGACCAGAGGGGCAGGATGCGCAAG
CCAGGGATCGACAGGGACCTCCTCTGCGTCCTACCGATCCTGCTACC
Found at i:17838419 original size:153 final size:153
Alignment explanation
Indices: 17838139--17838425 Score: 414
Period size: 153 Copynumber: 1.9 Consensus size: 153
17838129 ACTTCGTATG
* * * * * *
17838139 CTTAGACTGGGAATGAACTCTGTATGACTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
17838204 CGGCCAGAGGGTCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGCGATCGCTCGGGTCCCCCTCTGCATGCTACCGATCC
17838269 TGCTACCCTCAGTTCAGTCTGAT
131 TGCTACCCTCAGTTCAGTCTGAT
* *
17838292 CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
17838357 CGGCCAGAGGGGCAGGATGTGCAAGCCGGCGATCAGCT-GGGTCTCCCTCTGCATGTTGCCGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGCGATC-GCTCGGGTCCCCCTCTGCATGCTACCGATC
17838421 CTGCT
130 CTGCT
17838426 GCCGCAACCC
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
153 115 0.98
154 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (153 bp):
CTTAGACTGGGAATAAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCGGCGATCGCTCGGGTCCCCCTCTGCATGCTACCGATCC
TGCTACCCTCAGTTCAGTCTGAT
Found at i:17839193 original size:26 final size:26
Alignment explanation
Indices: 17839164--17839216 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17839154 CTGATCCGAT
17839164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17839190 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17839216 C
1 C
17839217 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17839381 original size:26 final size:26
Alignment explanation
Indices: 17839343--17839393 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17839333 CTGGTCTGAT
17839343 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17839369 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17839394 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17839872 original size:341 final size:337
Alignment explanation
Indices: 17839190--17840039 Score: 893
Period size: 341 Copynumber: 2.5 Consensus size: 337
17839180 ACTCCGTATG
** * *
17839190 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCTCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAAACAACCCACAAAATGAGCGGGCGGGCGCTCAGT
*
17839255 CGGCCAGAGGGGCAGGATACGTAAGCCGAGAATCGACCGGGTCCCCCTCTACGTCCTGTCGATCC
66 CGGCCAGAGGGGCAGGATACATAAGCCGAGAATCGACCGGGTCCCCCTCTACGTCCTGTCGATCC
* *
17839320 TGCTACCCACGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
131 TACTACCCACGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
17839385 ACTCCGTATAACTAAGTCAACCCACGAAACGAACGTACGGGCACCTAGCCGGCCAGAGGGGTAGG
196 ACTCCGTATAACTAAGTCAACCCACGAAACGAACGTACGGGCACCTAACCGGCCAAAGGGGCAGG
* * * * * * **
17839450 ATGCGCAAGTCGGGGATTGGCCAAGTCTCCCTCTGTGCGTTGCCGATCTTACTATCGTAACCCTC
261 ATGCGCAAGTCGGGGATCGACCAAGTCTCCCTC-GTGCGTTACCAATCCTACTACCACAACCCTC
**
17839515 GGTCTAGTTCGAT
325 GGTCTAGCCCGAT
* * * *
17839528 CTTAGACTGGGAATGAACTTCGTATGCCTAAAACAACCGACGAAATGAGTGGCGGGTGGGCGCTC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAAACAACCCACAAAATGA---GCGGGCGGGCGCTC
* * * * * *
17839593 AGTCGGCCAGAGGGGCGGGATACATAAGTCGGGGAAT-GGCCTGGTCCCCCTCTACGTGCTGTCG
63 AGTCGGCCAGAGGGGCAGGATACATAAG-CCGAGAATCGACCGGGTCCCCCTCTACGTCCTGTCG
* * *
17839657 ATCCTACTACCCTCGATCTGGTTTGATCTTAGACT-GGAAATGAACTCTGTATGCTTAGACTGGG
127 ATCCTACTACCCACGATCTGGTCTGATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACTGGG
* * * * * *
17839721 TATGAACTTCGTATAACTAAGTCAACCCATGAAACGAGCGTATGGGC-GCTCAACCGGCCAAAGG
191 AATGAACTCCGTATAACTAAGTCAACCCACGAAACGAACGTACGGGCACCT-AACCGGCCAAAGG
* ** * *
17839785 GGCAGGATGCGCAAGTCGGGGATCGATCGGGTCTCCCTC-TGCGTCCTATCAATCCTGCTACCAC
255 GGCAGGATGCGCAAGTCGGGGATCGACCAAGTCTCCCTCGTGCGT--TACCAATCCTACTACCAC
* *
17839849 AACCCTTGGT-TCGGCCCGAT
318 AACCCTCGGTCT-AGCCCGAT
* ** ** ** * * *
17839869 CTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAATGCATGAAATGAGCGTGCGGGCACTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAAACAACCCACAAAATGAGCGGGCGGGCGCTCAGT
* * * * ** * * * * * *
17839934 CCGCCAGATGGGCAGGATGCGTAAGTTGGGGATCGATCGGGTCCCCCTCTGCAT-GTGTCGATCC
66 CGGCCAGAGGGGCAGGATACATAAGCCGAGAATCGACCGGGTCCCCCTCTACGTCCTGTCGATCC
* * * *** *
17839998 TGCTACCCTCGGTCCATTCTGATCTTAGACTGGGAATGAACT
131 TACTACCCACGATCTGGTCTGATCTTAGACTAGGAATGAACT
17840040 TTGTATGCCT
Statistics
Matches: 423, Mismatches: 78, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
337 47 0.11
338 93 0.22
339 5 0.01
340 5 0.01
341 267 0.63
342 6 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (337 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAAACAACCCACAAAATGAGCGGGCGGGCGCTCAGT
CGGCCAGAGGGGCAGGATACATAAGCCGAGAATCGACCGGGTCCCCCTCTACGTCCTGTCGATCC
TACTACCCACGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATAACTAAGTCAACCCACGAAACGAACGTACGGGCACCTAACCGGCCAAAGGGGCAGG
ATGCGCAAGTCGGGGATCGACCAAGTCTCCCTCGTGCGTTACCAATCCTACTACCACAACCCTCG
GTCTAGCCCGAT
Found at i:17840778 original size:26 final size:26
Alignment explanation
Indices: 17840749--17840799 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17840739 TCGGTCCGAT
17840749 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17840775 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17840800 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17841837 original size:26 final size:26
Alignment explanation
Indices: 17841808--17841860 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17841798 CCAGTCCGAT
*
17841808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17841834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17841860 C
1 C
17841861 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17842963 original size:153 final size:154
Alignment explanation
Indices: 17842681--17843043 Score: 449
Period size: 153 Copynumber: 2.3 Consensus size: 154
17842671 ACGCTGTATG
* * * ** *
17842681 CTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACGAAACGAACGTGGGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * *
17842746 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCAGGTCTCTCTCTACATGCTGTTGATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCAGGTCTCCCTCTACATGCTGTCGATCC
* *
17842811 TGCT-ACCCTCAGTTTGATCTGAT
131 TGCTCACCCTCAGTTCGATCCGAT
** * *
17842834 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
** * * * * *
17842899 CGGCCAGAGGGGCAGGATGTGCAGGTCGGGGATCGATCGGGTCTCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCAGGTCTCCCTCTACATGCTGTCGATCC
*
17842964 TGCTACCGCAACCCTCAGTTCGGTCCGAT
131 TGCT----C-ACCCTCAGTTCGATCCGAT
* *
17842993 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
17843044 GGTGGGCAGG
Statistics
Matches: 176, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
153 115 0.65
159 61 0.35
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCAGGTCTCCCTCTACATGCTGTCGATCC
TGCTCACCCTCAGTTCGATCCGAT
Found at i:17843096 original size:159 final size:151
Alignment explanation
Indices: 17842681--17843096 Score: 417
Period size: 153 Copynumber: 2.7 Consensus size: 151
17842671 ACGCTGTATG
* *
17842681 CTTAGACTGGGAATGAACTTCGTATGCCTAAGGCAACCCACGAAACGAACGTGGG--GGCGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-ACGTGGGCAGGCGCTCA
* ** ** * *
17842744 GTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCAGGTCTCTCTCTACATGCTGTTGAT
65 GCCGGCCAGAGGGGCAGGATGTGCAAGCCATGGATC-G-C-GGTCTCCCTCTACATGCTGTCGAT
* *
17842809 CCTGCTACCCTCAGTTTGATCTGAT
127 CCTGCTACCCTCAGTTCGATCCGAT
** * *
17842834 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGA-GTGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGGGCAGGCGCTCAG
* * ** *
17842898 CCGGCCAGAGGGGCAGGATGTGCAGGTCGGGGATCGATCGGGTCTCCCTCTACGTGCTGTCGATC
66 CCGGCCAGAGGGGCAGGATGTGCAAGCCATGGATCG--C-GGTCTCCCTCTACATGCTGTCGATC
*
17842963 CTGCTACCGCAACCCTCAGTTCGGTCCGAT
128 CTGCT------ACCCTCAGTTCGATCCGAT
* * *
17842993 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-C--GTGGGCAGGCGCT
* *
17843058 -ACGCCGGCCAGAGTGGCGGGATGTGCAAGCCATGGATCG
63 CA-GCCGGCCAGAGGGGCAGGATGTGCAAGCCATGGATCG
17843097 ATAGGGTGGT
Statistics
Matches: 218, Mismatches: 31, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
151 4 0.02
152 2 0.01
153 110 0.50
159 59 0.27
162 1 0.00
163 42 0.19
ACGTcount: A:0.23, C:0.27, G:0.31, T:0.19
Consensus pattern (151 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGGGCAGGCGCTCAG
CCGGCCAGAGGGGCAGGATGTGCAAGCCATGGATCGCGGTCTCCCTCTACATGCTGTCGATCCTG
CTACCCTCAGTTCGATCCGAT
Found at i:17843710 original size:26 final size:26
Alignment explanation
Indices: 17843674--17843724 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17843664 AGTTCGATCA
* *
17843674 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
17843700 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
17843725 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:17843952 original size:178 final size:179
Alignment explanation
Indices: 17843669--17844053 Score: 524
Period size: 178 Copynumber: 2.2 Consensus size: 179
17843659 GATCTAGTTC
* *
17843669 GATCATAGACTGGGAATGAAC-TCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTTCTATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * **
17843733 ACCCATGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGGGGCAGGATGCTTAAGC-CAGGGATA
66 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGGGGCAGGATGCGCAA-CTCAGGGATA
* ** *
17843797 GATCGGTGCCCCTCTGTGTGCTGTCAATCCTGCTACCCTCGGTCCGATCT
130 GATCGGTCCCCCTCTACGTGCTGTCAATCCTGCTACCCTCAGTCCGATCT
* * *
17843847 GATCTTAGACTGGTAATGAACTTC-ATATGCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTTCTATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17843911 ACCCACGAAACGAGCTTGTGGGCGTTTAGCCGGTCAGAGGGGCAGGATGCGCAACTCAGGGATTG
66 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGGGGCAGGATGCGCAACTCAGGGATAG
* * *
17843976 GTCGGTCCCCCTCTACGTGCTGTCAATGCTGCTACCCTCAGTCCGGTCT
131 ATCGGTCCCCCTCTACGTGCTGTCAATCCTGCTACCCTCAGTCCGATCT
*
17844025 GATCTTAGACTGGGAATAAACTTCGTATA
1 GATCTTAGACTGGGAATGAACTTC-TATA
17844054 ACTAAGTCAA
Statistics
Matches: 179, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
177 1 0.01
178 173 0.97
179 2 0.01
180 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (179 bp):
GATCTTAGACTGGGAATGAACTTCTATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGGGGCAGGATGCGCAACTCAGGGATAG
ATCGGTCCCCCTCTACGTGCTGTCAATCCTGCTACCCTCAGTCCGATCT
Found at i:17844126 original size:152 final size:157
Alignment explanation
Indices: 17843876--17844243 Score: 437
Period size: 152 Copynumber: 2.4 Consensus size: 157
17843866 ACTTCATATG
* * * * *
17843876 CTTAGACTGGGAATGAAC-TCGGTATGCCTAAGTCAACCCACGAAACGAGCTTGTGGGCGTTTAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * *
17843940 CCGGTCAGAGGGGCAGGATGCGCAACTCAGGGATTGGTC-GGTCCCCCTCTACGTGCTGTC-A-A
65 CCGACCAGAGGGGCAGGATGCGCAACTCAGGGATTGGCCAGGTCCCCCTCTACGTGCTGCCGACA
* *
17844002 TGCTGCTAC-CC-TC-AGTCCGGTCTGAT
130 TGCTGCCACACCTTCGA-TCCGATCTGAT
* ** *
17844028 CTTAGACTGGGAATAAACTTCGTATAACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
17844093 CGACCAGAGGGGCAGGATGCGCAAGTC-GTGGATTGGCCAGGTCTCCCTCTGCGTGCTGCCGATC
66 CGACCAGAGGGGCAGGATGCGCAACTCAG-GGATTGGCCAGGTCCCCCTCTACGTGCTGCCGA-C
*
17844157 TTGCTGCCACAACCTTCGATCCGATCTGAT
129 ATGCTGCCAC-ACCTTCGATCCGATCTGAT
* * *
17844187 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
17844244 TGGGCACTAC
Statistics
Matches: 181, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
151 1 0.01
152 85 0.47
153 20 0.11
154 1 0.01
156 8 0.04
158 2 0.01
159 63 0.35
160 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCAGGATGCGCAACTCAGGGATTGGCCAGGTCCCCCTCTACGTGCTGCCGACAT
GCTGCCACACCTTCGATCCGATCTGAT
Found at i:17845106 original size:26 final size:26
Alignment explanation
Indices: 17845077--17845127 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17845067 TCGGTCCGAT
* * *
17845077 CTTAGATTGGGTATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCGTATG
17845103 CTTAGACTGGGAAAGAACTTCGTAT
1 CTTAGACTGGGAAAGAACTTCGTAT
17845128 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTTCGTATG
Found at i:17846205 original size:153 final size:154
Alignment explanation
Indices: 17845933--17846275 Score: 433
Period size: 153 Copynumber: 2.2 Consensus size: 154
17845923 CTCGGTCTGG
** *
17845933 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCAAGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATGCAAGCG
* * *
17845998 CTCAGTCGACTAGAGGGGCAGGATGTGCAAGTCGGGGATCAGTCGAGTCCCCCTCTGCGTGCTG-
66 CTCAGCCGACCAGAGGGGCAGGATGTGCAAGCCGGGGATCAGTCGAGTCCCCCTCTGCGTGCTGT
17846062 CTGATCCTGCT-ACCCTCAGTTTGA
131 C-GATCCTGCTCACCCTCAGTTTGA
* * **
17846086 TCTGATCTTAGACTGGGAATGAACTCTGTATAACTAAGTCAACCCACAAAACGAGCGTGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATGCAAGCG
* * *
17846151 CTCAGCCGGCCAGTA-GGGCAGGATGTGCAAGCCGGGGATC-GATCGGGTCTCCCTCTGCGTGCT
66 CTCAGCCGACCAG-AGGGGCAGGATGTGCAAGCCGGGGATCAG-TCGAGTCCCCCTCTGCGTGCT
* *
17846214 GTCGATCCTGCTGCCGCAACCTTCATTTTGA
129 GTCGATCCTGCT----C-ACCCTCAGTTTGA
* *
17846245 TCTGATCTTAGACTAGGAATAAACTCCGTAT
1 TCTGATCTTAGACTGGGAATGAACTCCGTAT
17846276 GCCTAAGCCA
Statistics
Matches: 163, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
152 1 0.01
153 121 0.74
154 2 0.01
159 39 0.24
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (154 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATGCAAGCG
CTCAGCCGACCAGAGGGGCAGGATGTGCAAGCCGGGGATCAGTCGAGTCCCCCTCTGCGTGCTGT
CGATCCTGCTCACCCTCAGTTTGA
Found at i:17847227 original size:153 final size:156
Alignment explanation
Indices: 17846990--17847359 Score: 415
Period size: 153 Copynumber: 2.4 Consensus size: 156
17846980 ACTCTGTATG
* ** * *
17846990 CTTAGACTGGCAATGAACTCTATATGCCTAAGTCAACTCACGAAACGAGCATGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
17847055 CAGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTACTTACTGCCAATCC
66 CAGCCAAAGGGGCAAGATGCACAAACCGAGGATCAATCGGGTCCCCCTCTACGTACTGCCAATCC
*
17847120 TGCTA-C-C-CTCGGTCTGATCTGAT
131 TGCTACCACTCTCAGTCTGATCTGAT
** *
17847143 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17847208 CGGCCAAAGGGGCAAGATGCACAAATCGGGGATCAATCGGGTCTCTCTCTACGTGCTGCCGATCC
66 CAGCCAAAGGGGCAAGATGCACAAACCGAGGATCAATCGGGTCCCCCTCTACGTACTGCCAATCC
* * *
17847273 TGCTACCATAACTCTCAGTTTGGTTTGAT
131 TGCTACC---ACTCTCAGTCTGATCTGAT
* * *
17847302 CCTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAG-GCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGC-GTGCGGGC
17847360 AGGCACTATG
Statistics
Matches: 178, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
153 113 0.63
154 1 0.01
158 1 0.01
159 62 0.35
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAAAGGGGCAAGATGCACAAACCGAGGATCAATCGGGTCCCCCTCTACGTACTGCCAATCC
TGCTACCACTCTCAGTCTGATCTGAT
Found at i:17849301 original size:153 final size:153
Alignment explanation
Indices: 17849018--17849305 Score: 344
Period size: 153 Copynumber: 1.9 Consensus size: 153
17849008 GATCCGATTC
* * ** **
17849018 GATCTTAGACTGGGAAAGAACTTCGTTTGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTC
1 GATCTTAGACTGGGAAAGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATATGGGCGCTC
* ** * * *
17849083 AGTCGGCCAGAGGGGCAAGATGTGCAAGCTGGGGATTGGCGGGGTCCCCCTCTACGTGCTATCGA
66 AGCCGGCCAGAGGGGCAAGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGA
17849148 TCCTGCCACGCTCGGTCTGGTAT
131 TCCTGCCACGCTCGGTCTGGTAT
* * **
17849171 GATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACAAAATGAGTGTATGGGCGCTC
1 GATCTTAGACTGGGAAAGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATATGGGCGCT-
** * *** * *
17849236 CA-CCGTTCAGAGGGGCAGGATGCACAAGCTGGGGATCGACCGGGTTTTCCTTTACGTGCTGTCG
65 CAGCCGGCCAGAGGGGCAAGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTATCG
17849300 ATCCTG
130 ATCCTG
17849306 TTGTCGCAAC
Statistics
Matches: 110, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
153 108 0.98
154 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (153 bp):
GATCTTAGACTGGGAAAGAACTCCGTATAACTAAGTCAACCCACAAAACGAGCATATGGGCGCTC
AGCCGGCCAGAGGGGCAAGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTATCGA
TCCTGCCACGCTCGGTCTGGTAT
Found at i:17850227 original size:26 final size:26
Alignment explanation
Indices: 17850198--17850248 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17850188 CCGATTTGAT
17850198 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17850224 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17850249 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17851119 original size:26 final size:26
Alignment explanation
Indices: 17851090--17851140 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17851080 GGTCCAATCA
17851090 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
17851116 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
17851141 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:17851303 original size:26 final size:26
Alignment explanation
Indices: 17851267--17851317 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17851257 TCGGTCTGAT
17851267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17851293 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17851318 AGGTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17851425 original size:179 final size:179
Alignment explanation
Indices: 17851090--17851426 Score: 455
Period size: 179 Copynumber: 1.9 Consensus size: 179
17851080 GGTCCAATCA
*
17851090 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
17851155 GAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGATAGGATGCAGAAGCCGAGGATCGACTGGG
66 GAAACGAACGTGCGGGCGCTCAACCAGCCAGAGGGACAGGATACAGAAGCCGAGGATCGACTGGG
* *
17851220 TCCCCCTCTGCGTGCTGCCGATCTTGCTACCATTGGTTCGGTCTGATCT
131 TCCCCCTCTACGTGCTGCCAATCTTGCTACCATTGGTTCGGTCTGATCT
* *
17851269 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAG-GTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT-GCCTAAGTCAACCCA
*** * *
17851333 CGAAACGAACGTGCGGGCGCTCCGTCAGCCAGAGGGGCAGGATAC-GTAAGTCGAGGATCGA-TC
65 CGAAACGAACGTGCGGGCGCTCAACCAGCCAGAGGGACAGGATACAG-AAGCCGAGGATCGACT-
* * **
17851396 GGGTCTCCCTCTATGTGCTTTCAATCTTGCT
128 GGGTCCCCCTCTACGTGCTGCCAATCTTGCT
17851427 GCTAGAACAC
Statistics
Matches: 136, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
178 2 0.01
179 133 0.98
180 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.22
Consensus pattern (179 bp):
TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAACGTGCGGGCGCTCAACCAGCCAGAGGGACAGGATACAGAAGCCGAGGATCGACTGGG
TCCCCCTCTACGTGCTGCCAATCTTGCTACCATTGGTTCGGTCTGATCT
Found at i:17852140 original size:26 final size:26
Alignment explanation
Indices: 17852111--17852163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17852101 CCTTTCCGAT
*
17852111 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
17852137 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17852163 C
1 C
17852164 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17852392 original size:179 final size:182
Alignment explanation
Indices: 17852108--17852520 Score: 501
Period size: 179 Copynumber: 2.3 Consensus size: 182
17852098 GGTCCTTTCC
* * * ** *
17852108 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTACGTCAA
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGGATAACTAAGTCAA
* * * *
17852173 CCCACGAAATGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGCAGGATGTGTAAGTCAGAGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCAGAGATCGA
* * * * *
17852238 TCGGGTC-CCTTTCTACGTGCTGTCGAT-CT-TGT-TACCCTCGGTCTGGTCT
131 TCGGGTCTCC-CTCTACGTGCTGCCGATCCTATATCAACCCTCGATCTGGTCT
* *
17852287 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGACCTCCGGATAACTAAGTTAA
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGGATAACTAAGTCAA
* * * * * * *
17852352 CCTATGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCAGGATGCGTAAGCCAGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCAGAGATCGA
**
17852417 TCGGGTCTCCCTCTGTGTGCTGCCGATCCTACTATCACAACCCTCGATCTGGTCT
131 TCGGGTCTCCCTCTACGTGCTGCCGATCCTA-TAT--CAACCCTCGATCTGGTCT
* * *
17852472 GATCTTAGACTGGGAATGAACTCTATATGCTCAGACTGGGAATGAACTC
1 GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
17852521 TGTATGCTTA
Statistics
Matches: 197, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
179 131 0.66
180 4 0.02
182 2 0.01
185 60 0.30
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (182 bp):
GATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGGATAACTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGTAAGCCAGAGATCGA
TCGGGTCTCCCTCTACGTGCTGCCGATCCTATATCAACCCTCGATCTGGTCT
Found at i:17852551 original size:26 final size:26
Alignment explanation
Indices: 17852475--17852553 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17852465 CTGGTCTGAT
*
17852475 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
17852501 CTCAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
17852527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17852553 C
1 C
17852554 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17854706 original size:153 final size:153
Alignment explanation
Indices: 17854410--17854803 Score: 421
Period size: 153 Copynumber: 2.5 Consensus size: 153
17854400 GCATGTGCTG
* * * * * * **
17854410 CTGCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTTCGCATGCCTAAGTCAACCCAC
1 CTGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCAC
*** *
17854475 GAAACGAGCGTGCGGGCACCCAGTGGGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCGGG
66 GAAACGAGCGTGCGGGCACCCAGCCAGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCGAG
17854540 TCCCCCTCTGCGTGCTACCGATC
131 TCCCCCTCTGCGTGCTACCGATC
* *
17854563 CTGCTACCCTCGGTCTGGTCCAATCTTAGTCTGGGAATGAACTCCGTATAACTAAGTCAACCCAC
1 CTGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCAC
* **** * *
17854628 GAAACGAGCGTGTGGGTGTTCAGCCAGCCAGAGGGGCAGGATGTGCAAGCCGAGGATCGACCGAG
66 GAAACGAGCGTGCGGGCACCCAGCCAGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCGAG
* * *
17854693 TCTCCCT-TCGCGTGCTGCTGATC
131 TCCCCCTCT-GCGTGCTACCGATC
* * ** *
17854716 CTGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCA
1 CTGCT------ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCA
* * * *
17854781 ATCGATGAAACGAGCGGGCGGGC
60 ACCCACGAAACGAGCGTGCGGGC
17854804 GGGCACTACG
Statistics
Matches: 197, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
152 1 0.01
153 132 0.67
159 64 0.32
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (153 bp):
CTGCTACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCAC
GAAACGAGCGTGCGGGCACCCAGCCAGCCAGAGGGACAGGATGCGCAAGCCGAGGATCGACCGAG
TCCCCCTCTGCGTGCTACCGATC
Found at i:17855483 original size:26 final size:26
Alignment explanation
Indices: 17855447--17855499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17855437 CCGGTCCGAT
*
17855447 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17855473 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17855499 C
1 C
17855500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17855783 original size:179 final size:179
Alignment explanation
Indices: 17855428--17856379 Score: 1021
Period size: 179 Copynumber: 5.3 Consensus size: 179
17855418 TGCTGTCGCA
* * *
17855428 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTC
1 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * * *
17855493 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGAATAC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
** * * *
17855558 ATAAACC-GAGGATTGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCT
131 GCAAGCCAG-GGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTGCT
* **
17855607 ACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTGCGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
17855672 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTCAGCCGGCCAAAGGGGCAAGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * *
17855737 GCAAGTCAGGGATCGGTCGAGTCTCCCTCTACGTGCTGCTGATCCTGTTGCT
131 GCAAGCCAGGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCC---TGCT
** * *
17855789 GCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGATTGGGAATGAA
1 ---ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * *
17855853 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGA
63 CTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* * * *
17855918 TGCGCAAGCC-GAGGATTGGTCGGGTCTCCTTCTGCGTGTTGCCGATCCTACT
128 TGCGCAAGCCAG-GGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTGCT
*** * * *
17855970 ACCCTCTAACCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTC
1 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * *
17856035 CGTATAACTAAGTCAACCCACAAAATGAGCGTGCAGGTGCTCTGCCGGCCAGAGGGGCAGGATGT
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * *
17856100 GCAAACCAAGGATTGGTCGGGTCCCCCTTTGCGTGCTATCGATCCTGCT
131 GCAAGCCAGGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTGCT
* ** ** * * *
17856149 TCCCTCGGTCTGGTTTGATCTTAGA-TAGGGAATGAACTCCATATGCTTAGGCTGGGAATGAGCT
1 ACCCTCGGTCCAGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
17856213 CCGTATAACTAAGTCAACCTAAGAAATGAGCATGTGGGCGCTCAGCCAGCCAGAGGGGCAGGATG
65 CCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * *
17856278 CGCAAGCCAAGGATCGGTCGGGTCTCCCTCTGTGTGCTACCGATACTGCTGCAGCA
130 CGCAAGCCAGGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGAT-C--CT---GCT
* * * *
17856334 ACCCTTGGTTCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
1 ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
17856380 CTAAGCCAAC
Statistics
Matches: 640, Mismatches: 115, Indels: 30
0.82 0.15 0.04
Matches are distributed among these distances:
178 22 0.03
179 421 0.66
180 2 0.00
181 3 0.00
182 6 0.01
183 1 0.00
184 125 0.20
185 59 0.09
186 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (179 bp):
ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
GCAAGCCAGGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTGCT
Found at i:17855850 original size:26 final size:25
Alignment explanation
Indices: 17855811--17855862 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17855801 CTGGTCTGAT
17855811 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
17855836 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
17855862 C
1 C
17855863 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17856025 original size:26 final size:26
Alignment explanation
Indices: 17855989--17856039 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17855979 CCAGTCTGAT
* *
17855989 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
17856015 CTTAGACTGGGAATCAACTCCGTAT
1 CTTAGACTGGGAATCAACTCCGTAT
17856040 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:17856146 original size:363 final size:360
Alignment explanation
Indices: 17855425--17856376 Score: 1144
Period size: 363 Copynumber: 2.6 Consensus size: 360
17855415 AAGTGCTGTC
* * *
17855425 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
* *
17855490 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGAA
66 CTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* ** * * * * **
17855555 TACATAAACCGAGGATTGGTCAGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCCTTGGTCCAG
130 TGCGCAAGCCGAGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTACTACCCTTGAACCAG
* *
17855620 TCCGATCTTAGACTGGGAATGAACTCCGTGCGCTTAGACTGGGAATGAACTCCGTATAACTAAGT
195 TCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATCAACTCCGTATAACTAAGT
** * ** *
17855685 CAACCCATGAAACGAGCGTGCAGGCGTTCAGCCGGCCAAAGGGGCAAGATGCGCAAGTCAGGGAT
260 CAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAACCAAGGAT
*
17855750 CGGTCGAGTCTCCCTCTACGTGCTGCTGATCCTGTTGCT
325 CGGTCGAGTCCCCCTCTACGTGCTGCTGATCC---TGCT
17855789 GCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGATTGGGAATGAA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
* * *
17855853 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGA
66 CTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* * *
17855918 TGCGCAAGCCGAGGATTGGTCGGGTCTCCTTCTGCGTGTTGCCGATCCTACTACCCTCT-AACCA
130 TGCGCAAGCCGAGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTACTACCCT-TGAACCA
* * *
17855982 GTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATAACTAAG
194 GTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATCAACTCCGTATAACTAAG
* * * * * *
17856047 TCAACCCACAAAATGAGCGTGCAGGTGCTCTGCCGGCCAGAGGGGCAGGATGTGCAAACCAAGGA
259 TCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAACCAAGGA
* * * * *
17856112 TTGGTCGGGTCCCCCTTTGCGTGCT-ATCGATCCTGCT
324 TCGGTCGAGTCCCCCTCTACGTGCTGCT-GATCCTGCT
* * * **
17856149 ---TCCCTCGGTCTGGTTTGATCTTAGA-TAGGGAATGAACTCCATATGCTTAGGCTGGGAATGA
1 GCAACCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGATTGGGAATGA
* ** * * * *
17856210 GCTCCGTATAACTAAGTCAACCTAAGAAATGAGCATGTGGGCGCTCAGCCAGCCAGAGGGGCAGG
65 ACTCCGTATGCCTAAGTCAACCCAA-AAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGG
* * * *
17856275 ATGCGCAAGCCAAGGATCGGTCGGGTCTCCCTCTGTGTGCTACCGATACTGCTGCAGCAACCCTT
129 ATGCGCAAGCCGAGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGAT-C--CT--A-CTACCCTT
*** * *
17856340 GGTTCAGTCCAATCTTAGACTAGGAATGAACTCCGTA
188 GAACCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
17856377 TGCCTAAGCC
Statistics
Matches: 503, Mismatches: 73, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
356 1 0.00
357 24 0.05
358 124 0.25
359 1 0.00
360 4 0.01
361 2 0.00
362 1 0.00
363 282 0.56
364 64 0.13
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (360 bp):
GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCAAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
GCGCAAGCCGAGGATTGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTACTACCCTTGAACCAGT
CCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATCAACTCCGTATAACTAAGTC
AACCCACAAAACGAGCGTGCAGGCGCTCAGCCGGCCAAAGGGGCAAGATGCGCAAACCAAGGATC
GGTCGAGTCCCCCTCTACGTGCTGCTGATCCTGCT
Found at i:17857106 original size:26 final size:26
Alignment explanation
Indices: 17857055--17857107 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17857045 CCGGTTCGAT
*
17857055 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
17857081 CTTAGACTTGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17857107 C
1 C
17857108 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17857338 original size:179 final size:179
Alignment explanation
Indices: 17857036--17857376 Score: 461
Period size: 179 Copynumber: 1.9 Consensus size: 179
17857026 TGTTGTCACA
* * * *
17857036 ACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTTGTAATGAACTC
1 ACCCTCGGTCCAGTTCGATCTTAAACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTC
** * * *
17857101 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCACCCAGAGGGGCAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCACCCAAAGGGGCAGGATGC
* *
17857166 GCAAGCCGAGGATTGATCGGGTCCCCCTCTACATGCTGCAGATCTTGCT
131 GCAAGCCGAGGATCGATCGAGTCCCCCTCTACATGCTGCAGATCTTGCT
* * *
17857215 ACCCTCGGTCCAG-TCTGATCTTAAATTGGGAATGAAC-TCTGTGTGCTTAGACTGGGAATGAAC
1 ACCCTCGGTCCAGTTC-GATCTTAAACTGGGAATGAACTTC-ATATGCTTAGACTGGGAATGAAC
* **
17857278 TCCGTATAACTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAAAGGGGCAGGAT
64 TCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCACCCAAAGGGGCAGGAT
* * * *
17857343 GTGCAAGCCGGGGATCGGTCGAGTCTCCCTCTAC
129 GCGCAAGCCGAGGATCGATCGAGTCCCCCTCTAC
17857377 GTGCAGCCAA
Statistics
Matches: 139, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
178 4 0.03
179 135 0.97
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (179 bp):
ACCCTCGGTCCAGTTCGATCTTAAACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCACCCAAAGGGGCAGGATGC
GCAAGCCGAGGATCGATCGAGTCCCCCTCTACATGCTGCAGATCTTGCT
Found at i:17858148 original size:26 final size:26
Alignment explanation
Indices: 17858119--17858171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17858109 CTGGTTTGAT
*
17858119 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17858145 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17858171 C
1 C
17858172 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17858333 original size:26 final size:26
Alignment explanation
Indices: 17858297--17858373 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
17858287 CTAGTTTGAT
*
17858297 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17858323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17858349 CTTAGAATGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17858374 AACTAAGTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17860560 original size:26 final size:26
Alignment explanation
Indices: 17860522--17860574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17860512 CCGATCCGAT
*
17860522 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
17860548 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17860574 C
1 C
17860575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17861640 original size:26 final size:26
Alignment explanation
Indices: 17861598--17861650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17861588 CTGGTTCGAT
*
17861598 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17861624 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17861650 C
1 C
17861651 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17862526 original size:26 final size:26
Alignment explanation
Indices: 17862490--17862542 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17862480 CTGGTCTGAT
17862490 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17862516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17862542 C
1 C
17862543 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17862589 original size:892 final size:896
Alignment explanation
Indices: 17861238--17863028 Score: 2676
Period size: 894 Copynumber: 2.0 Consensus size: 896
17861228 GTATTCACAA
*
17861238 AAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGCCAATTTGAAAAAAATGTCCCCATT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCAATTTGAAAAAAATGTCCCCATT
* * *
17861303 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCCCAAATGCTCTGTAAGGGGGTGTG
66 TCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCCCAAATGCTCTGTAAGGGGGTGTG
*
17861368 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCAC
131 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGCACCAGCACCCATCGCAC
17861433 ATCATGTGCGCACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCAGCCAAGTTCTC
196 ATCATGTGCGCACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCAGCCAAGTTCTC
* *
17861498 CGGCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATACGAGACCAGCACATACCCCAGCC
261 CGACGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAAAATACGAGACCAGCACATACCCCAGCC
* *
17861563 CAGCATGTGCTGTGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAGTGAACTCCGTATGCTTA
326 CAGCATGTGCTGCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
* ** * *
17861628 GACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCTGCCGGC
391 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCTCAGACGGC
* * *
17861693 CAGAGGGGCAGGACGCACAAGCCGGGGATCGGTCGGTTCCCCCTCTGCGTGCTGTCGATCCTACT
456 CAGAGGGGCAGGACGCACAAGCCAGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACT
* ** *
17861758 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-T
520 ACCCTCGGTCCGATCCGATCTTAGACTAAGAATGAACTCCATATGCTTAGACTGGGAATGAACTT
* * *
17861822 CTGCATAACTAAGTCAACCCATGAAACGAGCGTAC-GGACGCTCAGCCA-CCAGTGGGGCAAGAT
585 CCGCATAACTAAGTCAACCCACGAAACGAGCGTACAGG-CGCTCAGCCAGCCAGAGGGGCAAGAT
* * * *
17861885 GCGCAAGCCGGGGATCGACCGGGTCTCCCTCTGCGTGCTGTC-GAT-CTGCTACCACAACCCTAG
649 ACGCAAGCCGGGGATCGACCGGGTCTCCCTCTGCATGCTG-CAAATCCTACTACCACAACCCTAG
* * * * *
17861948 ATTC-GATTCAATCTTAGACT-GAGAATGAAC-TCTGTATGCCTAACCCATCCGATGAAACGAGT
713 ATCCAG-TCCAATCTTAGACTAG-GAATGAACTTC-GTATGCCTAACCCAACCGACGAAACGAGC
* *
17862010 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
775 GGGCGGGCGGGCACTACACCAGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
* * *
17862075 TGTGGGTTTAGGCACATCTTTATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT
840 GGT-GGTGTAGGCACATCTTGATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT
* *
17862133 AAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATC-ATTTGAAAAAAGTGTCCCCAT
1 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG-CCAATTTGAAAAAAATGTCCCCAT
* *
17862196 TTCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
65 TTCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCCCAAATGCTCTGTAAGGGGGTGT
* *
17862261 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCGCA
130 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGCACCAGCACCCATCGCA
* * * *
17862326 CATCATGTGCGCAC-CCCCCTGG-TCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
195 CATCATGTGCGCACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCAGCCAAGTTCT
* * * **
17862389 CCGACGATGCTCCGGCGATGGTGCCCCGAGCG-AAAAAAAATACG-GCACCAGCACATGCTCGGG
260 CCGACGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAAAATACGAG-ACCAGCACATACCCCAG
* *
17862452 TCCAGCATGTGCTGCCGCAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATG
324 CCCAGCATGTGCTG-CGCAACCCTCGGTCTGGTTC-GATCTTAGACTAGGAATGAACTCCGTATG
*
17862516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGA
387 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCTCAGA
* * * * *
17862581 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGTCGGGTCCCCTTCTGTGTGCTGCCGATCTT
452 CGGCCAGAGGGGCAGGACGCACAAGCCAGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
*
17862646 GCTACCCTCGGTCCGATCCGATCTTAGACTAAGAATGAACTCCATATGCTTAGACTGGGAATGAA
517 ACTACCCTCGGTCCGATCCGATCTTAGACTAAGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * * *
17862711 CTTCCGTATAACTAAGTCAACCGACGAAACGAGCGTGCAGGTGCTCAGCCAGCCAGAGGGGCAGG
582 CTTCCGCATAACTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGGGGCAAG
* ** ** *
17862776 ATACGGAAGCCGGGGATCGACCGGGTCTCCCTCTGCATGCTGCAAATCCTACTGTCGTAACCCTC
647 ATACGCAAGCCGGGGATCGACCGGGTCTCCCTCTGCATGCTGCAAATCCTACTACCACAACCCTA
* *
17862841 GATCCAGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGG
712 GATCCAGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAACCCAACCGACGAAACGAGCGG
*
17862906 GCGGGCGGGCACTACACCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
777 GCGGGCGGGCACTACACCAGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGG
* *
17862971 TGGTGTAGGCCCATCTTGATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
842 TGGTGTAGGCACATCTTGATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT
17863026 AAA
1 AAA
17863029 TTCATACAAT
Statistics
Matches: 806, Mismatches: 78, Indels: 26
0.89 0.09 0.03
Matches are distributed among these distances:
890 1 0.00
891 127 0.16
892 240 0.30
893 115 0.14
894 313 0.39
895 10 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (896 bp):
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGCCAATTTGAAAAAAATGTCCCCATT
TCAAACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCCCAAATGCTCTGTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGCACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCAGCCAAGTTCTC
CGACGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAAAATACGAGACCAGCACATACCCCAGCC
CAGCATGTGCTGCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCGCTCAGACGGC
CAGAGGGGCAGGACGCACAAGCCAGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTA
CCCTCGGTCCGATCCGATCTTAGACTAAGAATGAACTCCATATGCTTAGACTGGGAATGAACTTC
CGCATAACTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAGAGGGGCAAGATAC
GCAAGCCGGGGATCGACCGGGTCTCCCTCTGCATGCTGCAAATCCTACTACCACAACCCTAGATC
CAGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGG
GCGGGCACTACACCAGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGT
GTAGGCACATCTTGATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT
Found at i:17863917 original size:147 final size:149
Alignment explanation
Indices: 17863544--17863917 Score: 396
Period size: 153 Copynumber: 2.5 Consensus size: 149
17863534 CATGTGTTGC
* *
17863544 TGCAACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 TGCAACCCTCAGTCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * **
17863609 GAACGAGCGTGCGGGCGCTCAACTGGCCAGAGAGGTAGAATACGCAAGCCAGGGATCGGTTGGGT
66 AAACGAGCGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGGCCGGGT
* **
17863674 CCCCTTTTGTGTGCTGCCGATCT
131 CCCCTTCTCCGTGCT--CGA--T
* * * * **
17863697 TGCTACCCTCAGTCCGGTCTGATCTTAGGCTAGGAATGAACTCCGTATAACTAAGTCAACCCACG
1 TGCAACCCTCAGTCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
17863762 AAACGAGCGTACGGGCACTCAGCCGGCCAGAGTGGCAGGATGCACAAGCCAGGGATTGGCCGGGT
66 AAACGAGCGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGGCCGGGT
17863827 CTCCC-TCTCCGTGCT-G-T
131 C-CCCTTCTCCGTGCTCGAT
* * * ** *
17863844 TGCAACCCT-TGATTCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAAT
1 TGCAACCCTCAG-TCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
17863908 GAAACGAGCG
65 GAAACGAGCG
17863918 GGTGGGTGGG
Statistics
Matches: 184, Mismatches: 35, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
146 1 0.01
147 61 0.33
150 1 0.01
153 118 0.64
154 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (149 bp):
TGCAACCCTCAGTCCGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTACGGGCACTCAACCGGCCAGAGAGGCAGAATACACAAGCCAGGGATCGGCCGGGT
CCCCTTCTCCGTGCTCGAT
Found at i:17870501 original size:26 final size:27
Alignment explanation
Indices: 17870472--17870548 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 27
17870462 CCGATCCGAT
17870472 CTTAGACTGGA-AATGAACTCCGTATA
1 CTTAGACTGGAGAATGAACTCCGTATA
* *
17870498 CTTAGACT-AAGAATGAACTCTGTATA
1 CTTAGACTGGAGAATGAACTCCGTATA
17870524 CTTAGAC-GGAGAATGAACTCCGTAT
1 CTTAGACTGGAGAATGAACTCCGTAT
17870549 GCCTAAGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
CTTAGACTGGAGAATGAACTCCGTATA
Found at i:17871613 original size:26 final size:26
Alignment explanation
Indices: 17871577--17871627 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17871567 CTATTTTGAT
17871577 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17871603 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
17871628 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17872359 original size:901 final size:900
Alignment explanation
Indices: 17870673--17872345 Score: 2581
Period size: 901 Copynumber: 1.9 Consensus size: 900
17870663 TGGTCCGGTC
*
17870673 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGAGAATGAACTCTGTATAACTAAGTCA
1 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCTGTATAACTAAGTCA
* * ** *
17870738 ACCCACGAAACGAGCATGGGCCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGA
66 ACCCACGAAACGAGCACGGGCCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCAGGGGATCGA
* * * * ** * *
17870803 TCGGGTCTCCTTCTACTTGCTGCTAATCCTACTGCCGTAACCCTCAGTCCAGTTCTATCTTAGAT
131 CCAGGTCTCCCTCTACGTGCTGCTAATCCTACTGCCACAACCCTCAGTCCAGGTCTATCTTAGAC
* * * * * **
17870868 TGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACGAGGGGGCGGGCGGGTACTACGTTGG
196 TGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTAAGCCGG
**
17870933 CCAGAGAGGCGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
261 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
17870998 TATTTCTGCCTTGCCAATGCCATTTTTATGACTTGTAAATTCATAGAATGGTCCCTTAAGCCTTC
326 TATTTCTGCCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17871063 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAATTTTGAAACTTTTTACGGT
391 ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAATTTTGAAACTTTTTACGGT
* * *
17871128 TCGAGATTTTTTAAAATTTTTTTAGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGT
456 TCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCATGT
17871193 ATTTTTTTGGCATGCAAACAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCAT
521 ATTTTTTTGGCATGCAAACAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCAT
* *
17871258 TTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAA
586 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTACAAAATCTCAA
* * * * * *
17871323 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
651 ATGCTCTTTAAGGGGATGTGACTTCTCGAGGTTTAAGGAGGGATAGGGGACCAATATAAGAGCCA
* *
17871388 AGTACCAGCACCCATCGCACATCATGTGCGTACAACCCCCCGGCCCCCCAAATCGCCTGAACCTC
716 AGTACCAACACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCAAATCGCCTGAACCTC
17871453 AATGCCATCGATGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCAGGATGCGCAAGCCAG
781 AATGCCATCGATGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCAGGATGCGCAAGCCAG
17871518 GGATCGGCTGCGTCCCCCTCTATGTGCTGTCGATCCTGCTACCCTCGATCTATTT
846 GGATCGGCTGCGTCCCCCTCTATGTGCTGTCGATCCTGCTACCCTCGATCTATTT
*
17871573 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT-TCGTATAACTAAGTC
1 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCT-GTATAACTAAGTC
* *
17871637 AACCCACGAAACGAGCGTACGGG-CGCTCAGTCGGCCAGAGGGGTAGGATGCACAAGCAGGGGAT
65 AACCCACGAAACGAGC--ACGGGCCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCAGGGGAT
* * * *
17871701 C-AGCCAGGTCTCCCTCTACGTGCTG-TCGATTCTGCTGCCACAACCCTCAGT-CTGGTCTGATC
128 CGA-CCAGGTCTCCCTCTACGTGCTGCT-AATCCTACTGCCACAACCCTCAGTCCAGGTCT-ATC
* *
17871763 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAATCGAGCGGACGGGCGGGCACTA
190 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
*
17871828 AGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
255 AGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
17871893 TCTTCGTA-TTCTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTA
320 TCTTCATATTTC-TGCCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTA
* *
17871957 GGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
384 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAATTTTGAAACTTT
* *
17872022 TTACGGTTTGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACATGGTAGACATGA
449 TTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACATGA
* * *
17872087 TCCTTTTATTTTTTTTGGCATGC-ACCAAATAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTT
514 TCCATGTA-TTTTTTTGGCATGCAAACAAA-AACTTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
17872150 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGCA
577 TGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTACA
17872215 AAATCTCAAATGCTCTTTAAGGGGATGTGACTTCTCGAGGTTTAAGGAGGGATAGGGGACCAATA
642 AAATCTCAAATGCTCTTTAAGGGGATGTGACTTCTCGAGGTTTAAGGAGGGATAGGGGACCAATA
* * * *
17872280 TAAGAGCCATGTATCAACACCCATCGCACATCTTGTGCGCAC-ACCCCCCGGCCCCTCCCAATCG
707 TAAGAGCCAAGTACCAACACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCC-CCAAATCG
17872344 CC
771 CC
17872346 GAAATCCCAA
Statistics
Matches: 695, Mismatches: 68, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
899 1 0.00
900 99 0.14
901 575 0.83
902 20 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (900 bp):
TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGAGAATGAACTCTGTATAACTAAGTCA
ACCCACGAAACGAGCACGGGCCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCAGGGGATCGA
CCAGGTCTCCCTCTACGTGCTGCTAATCCTACTGCCACAACCCTCAGTCCAGGTCTATCTTAGAC
TGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTAAGCCGG
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGAATTTTGAAACTTTTTACGGT
TCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCATGT
ATTTTTTTGGCATGCAAACAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTACAAAATCTCAA
ATGCTCTTTAAGGGGATGTGACTTCTCGAGGTTTAAGGAGGGATAGGGGACCAATATAAGAGCCA
AGTACCAACACCCATCGCACATCATGTGCGCACAACCCCCCGGCCCCCCAAATCGCCTGAACCTC
AATGCCATCGATGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCAGGATGCGCAAGCCAG
GGATCGGCTGCGTCCCCCTCTATGTGCTGTCGATCCTGCTACCCTCGATCTATTT
Found at i:17872657 original size:26 final size:26
Alignment explanation
Indices: 17872628--17872678 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17872618 CCGATTCGAT
* *
17872628 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
17872654 CTTAGATAGGGAATGAACTCCGTAT
1 CTTAGATAGGGAATGAACTCCGTAT
17872679 AACTATGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:17873706 original size:26 final size:26
Alignment explanation
Indices: 17873667--17873719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17873657 CTGGTCTGAT
* *
17873667 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17873693 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
17873719 C
1 C
17873720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:17873831 original size:179 final size:179
Alignment explanation
Indices: 17873514--17873995 Score: 655
Period size: 179 Copynumber: 2.7 Consensus size: 179
17873504 CCGGTCTGAT
* * * * *
17873514 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGA-GTACAGGCACCCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-ACGTGCAGGCGCTCAG
** * * *
17873578 CC-GACCAGAGGGCCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGAT
65 CCAG-CCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAAT
*
17873642 CCTGCTACCCTCGGTCTGGTCTGATCTTAGAC-TGTGAATGAACTCCGTATG
129 CCTACTACCCTCGGTCTGGTCTGATCTTAGACTTG-GAATGAACTCCGTATG
* * *
17873693 CTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCAGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCAGGCGCTCAGC
* * * **
17873758 CAGCCAGAGGGGTATGATGAGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGTGTGCTGCCAATCC
66 CAGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCC
17873823 TACTACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATG
131 TACTACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATG
* ** * * * *
17873872 CTTAGACTGGGAATGAACTTCGTATAACTAATTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCAGGCGCTCAGC
* * *
17873937 CAGCCAGAGGGGTAGGATGCTCAAGCCGGGGATCGGTCGGGTCTCCCTCTACATGCTGC
66 CAGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGC
17873996 TGAACCTGCT
Statistics
Matches: 263, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
178 1 0.00
179 259 0.98
180 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (179 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTGCAGGCGCTCAGC
CAGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCAATCC
TACTACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATG
Found at i:17873884 original size:26 final size:26
Alignment explanation
Indices: 17873846--17873896 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17873836 CTGGTCTGAT
*
17873846 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17873872 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17873897 AACTAATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17874782 original size:26 final size:26
Alignment explanation
Indices: 17874742--17874792 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17874732 CTGGTCCAAT
*
17874742 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
*
17874768 CTTACACTGGTAATGAACTTCGTAT
1 CTTACACTGGGAATGAACTTCGTAT
17874793 AACTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:17875088 original size:26 final size:26
Alignment explanation
Indices: 17875059--17875111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17875049 CTGATATGAT
17875059 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
17875085 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
17875111 C
1 C
17875112 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:17876134 original size:26 final size:26
Alignment explanation
Indices: 17876105--17876157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17876095 CTGGTCTGAT
*
17876105 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17876131 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17876157 C
1 C
17876158 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17877210 original size:26 final size:26
Alignment explanation
Indices: 17877181--17877233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17877171 CCGGTCTGAT
17877181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17877207 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17877233 C
1 C
17877234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17877501 original size:179 final size:179
Alignment explanation
Indices: 17877175--17877501 Score: 449
Period size: 179 Copynumber: 1.8 Consensus size: 179
17877165 TTCGATCCGG
* * * **
17877175 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGT
** * * *
17877240 CAACCCACGGAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGTCGGGGAT
66 CAACCCACAAAACGAGCGTACGGGAGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGAT
*
17877305 CAACTGGGTCCCCCTCTGTGTACTGCTTATCCTGCTACCCTCGGTCTGA
131 CAACTGGGTCACCCTCTGTGTACTGCTTATCCTGCTACCCTCGGTCTGA
* *
17877354 TCTGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGAAATGTACTCCGTATAACTAGGT
1 TCTGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGT
* * * * * *
17877419 CAACCCATAAAACGAGCGTGCGGGAGCTCAGTCGGCCAGAGGGGTAGGATGCGTAAGTCGGGGAT
66 CAACCCACAAAACGAGCGTACGGGAGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGAT
**
17877484 C-GGTCGGGTCACCCTCTG
131 CAACT-GGGTCACCCTCTG
17877502 GATGCTGCCG
Statistics
Matches: 126, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
178 1 0.01
179 125 0.99
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (179 bp):
TCTGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGT
CAACCCACAAAACGAGCGTACGGGAGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGAT
CAACTGGGTCACCCTCTGTGTACTGCTTATCCTGCTACCCTCGGTCTGA
Found at i:17879080 original size:159 final size:152
Alignment explanation
Indices: 17878718--17879080 Score: 381
Period size: 153 Copynumber: 2.3 Consensus size: 152
17878708 ACTCCATATG
* *
17878718 CTTAGACTGCGAATGAAC-TCTGTATGCCTAAGTCAAACCATGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAG-CCAACCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
17878782 TAGGCCAGAGGGGTAGGATGCGTAAATCGAGGATCGATCGGGTCTCGCTCTACCTGCTGTCGATT
64 TAGGCCAGAGAGGTAAGATGCATAAATCGAGGATCGACCGGGTCTCCCTCTACCTGCTGCCAATT
* *
17878847 CTGTTACCCTCGGTCTAATCCGAT
129 CTGTAACCCTCAGTCTAATCCGAT
** * * * *
17878871 CTTAGACTGGGAATGAACTTCGTATAACTAAGTCAACCCAAGCAAA-GAGCGTGCGGGCGTTCAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA-CCATG-AAACGAGCGTACGGGCGCTCAG
* * * *
17878935 TCGGCCAGAGAGGTAAGATGCATAAGTCGAGGATCGACCGGGTCTCCCTCTGCGTGCTGCCAA-T
64 TAGGCCAGAGAGGTAAGATGCATAAATCGAGGATCGACCGGGTCTCCCTCTACCTGCTGCCAATT
** *
17878999 CTTGCTACCACAACCCTCAGTCTGGTTCGAT
129 C-TG-T-----AACCCTCAGTCTAATCCGAT
17879030 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC-ATGAAACGAGCG
17879081 GGCAGGCGGG
Statistics
Matches: 170, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
152 4 0.02
153 100 0.59
154 6 0.04
158 5 0.03
159 55 0.32
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (152 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCATGAAACGAGCGTACGGGCGCTCAGTA
GGCCAGAGAGGTAAGATGCATAAATCGAGGATCGACCGGGTCTCCCTCTACCTGCTGCCAATTCT
GTAACCCTCAGTCTAATCCGAT
Found at i:17879762 original size:26 final size:26
Alignment explanation
Indices: 17879733--17879785 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879723 CCAATCCGAT
17879733 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17879759 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17879785 C
1 C
17879786 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17879930 original size:26 final size:26
Alignment explanation
Indices: 17879901--17879951 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879891 CTGATTCGAT
17879901 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17879927 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
17879952 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17880003 original size:168 final size:168
Alignment explanation
Indices: 17879714--17880017 Score: 466
Period size: 168 Copynumber: 1.8 Consensus size: 168
17879704 TGCTGCCGCA
17879714 ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * * *
17879779 CGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAACTGGCTAGAGGGGCAAGATAC
66 CGTATAACTAAGTCAACCCATGAAATGAGAGTACAGGCGCTCAACTGGCCAGAGGGGCAAGATAC
17879844 GCAAGCTGGGCCCCCCTCTGCGTGCTGCCGATCCTGCT
131 GCAAGCTGGGCCCCCCTCTGCGTGCTGCCGATCCTGCT
** * *
17879882 ACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
17879947 TGTATAACTAAGTCAACCCATGAAATGAGAGTACGGGCGCTC-AGTCGGCCAGAGGGGCAGGATG
66 CGTATAACTAAGTCAACCCATGAAATGAGAGTACAGGCGCTCAACT-GGCCAGAGGGGCAAGATA
17880011 CGCAAGC
130 CGCAAGC
17880018 CGGGGATCGG
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
167 2 0.02
168 119 0.98
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (168 bp):
ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCATGAAATGAGAGTACAGGCGCTCAACTGGCCAGAGGGGCAAGATAC
GCAAGCTGGGCCCCCCTCTGCGTGCTGCCGATCCTGCT
Found at i:17881221 original size:185 final size:179
Alignment explanation
Indices: 17880783--17881510 Score: 830
Period size: 185 Copynumber: 4.0 Consensus size: 179
17880773 TCGGTCTGAT
* ** *
17880783 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
17880848 CGACCAGAGGGGCAGGATGCGTAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
17880913 TGCTACCCTCTGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATG
131 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17880962 CTTAGACTGGGAATGAACTCTGCATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
17881027 CGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATAGGTCGGGTCTCCCTCTACGTGCTGTCGATCC
66 CGACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
17881092 TGCTGCCGCAACCCTTGGT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTAAG
131 TGCT------ACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
17881147 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
17881212 CGACCAGAGGGGCATGACGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCT-ACGATCC
66 CGACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
17881276 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATG
131 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
17881325 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACGCACGAAACAAGCGTGCGGGTACTTAAC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * *
17881390 CGGCCAGAGGGGTAGGATGCGTAAGCTAGGGATCGACCGGGTCTCCCTTTCCATGCTGCCGATCC
66 CGACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
17881455 TGGTGCTGCAACCCCCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
131 ---TGCT---ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
17881510 C
1 C
17881511 CTAAGCCAAC
Statistics
Matches: 460, Mismatches: 74, Indels: 24
0.82 0.13 0.04
Matches are distributed among these distances:
178 133 0.29
179 129 0.28
182 4 0.01
184 12 0.03
185 182 0.40
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (179 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17881339 original size:26 final size:26
Alignment explanation
Indices: 17881299--17881349 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17881289 CCAGTCCGAT
*
17881299 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17881325 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
17881350 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17881455 original size:363 final size:364
Alignment explanation
Indices: 17880783--17881507 Score: 1031
Period size: 363 Copynumber: 2.0 Consensus size: 364
17880773 TCGGTCTGAT
*
17880783 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
17880848 CGACCAGAGGGGCAGGATGCGTAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGACCAGAGGGGCAGGACGCGTAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGACGATCC
* * * *
17880913 TGCTACCCTCTGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
131 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGA
* * * * **
17880978 ACTCTGCATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTAGG
196 ACTCCGCATAACTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGTAGG
* ** * * **
17881043 ATGCGTAAGCCGGGGATAGGTCGGGTCTCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTT
261 ATGCGTAAGCCAGGGATAGACCGGGTCTCCCTCTACATGCTGCCGATCCTGCTGCCGCAACCCCC
* *
17881108 GGT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTAAG
326 GATCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTAAG
* * * * *
17881147 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGTTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** **
17881212 CGACCAGAGGGGCATGACGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCT-ACGATCC
66 CGACCAGAGGGGCAGGACGCGTAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGACGATCC
* *
17881276 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGA
131 TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGA
* * * *
17881341 ACTCCGTATAACTAAGTCAACGCACGAAACAAGCGTGCGGGTACTTAACCGGCCAGAGGGGTAGG
196 ACTCCGCATAACTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGTAGG
* * * * * *
17881406 ATGCGTAAGCTAGGGATCGACCGGGTCTCCCTTTCCATGCTGCCGATCCTGGTGCTGCAACCCCC
261 ATGCGTAAGCCAGGGATAGACCGGGTCTCCCTCTACATGCTGCCGATCCTGCTGCCGCAACCCCC
17881471 GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
326 GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
17881508 TGCCTAAGCC
Statistics
Matches: 316, Mismatches: 44, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
363 204 0.65
364 112 0.35
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (364 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGGGGCAGGACGCGTAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGACGATCC
TGCTACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGA
ACTCCGCATAACTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAGGGGTAGG
ATGCGTAAGCCAGGGATAGACCGGGTCTCCCTCTACATGCTGCCGATCCTGCTGCCGCAACCCCC
GATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAAG
Found at i:17887527 original size:26 final size:26
Alignment explanation
Indices: 17887498--17887549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17887488 TCGGTCCGAT
17887498 CTTAGA-CTGAGAATGAACTCCGTATG
1 CTTAGATC-GAGAATGAACTCCGTATG
17887524 CTTAGATCGAGAATGAACTCCGTATG
1 CTTAGATCGAGAATGAACTCCGTATG
17887550 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGATCGAGAATGAACTCCGTATG
Found at i:17888564 original size:26 final size:26
Alignment explanation
Indices: 17888535--17888585 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17888525 CCGATTCGAT
17888535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17888561 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17888586 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17888758 original size:183 final size:182
Alignment explanation
Indices: 17888383--17889105 Score: 794
Period size: 183 Copynumber: 4.0 Consensus size: 182
17888373 CCGATCCGAT
* ** * * *
17888383 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * *
17888448 CGGCCAGAGGGGCAGGATGCGTAAG-TCGAGGATC-GTCGGGTCCCCCTCTACGTGCTGCCGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATC
* *
17888511 CTGCT---ACCCTCAGTCCGATTC-GATCTTAGACTGGGAATGAACTCCGTATG
130 CTGCTGCCACCCTCAGTCTGAGTCTGATCTTAGACT-GGAATGAACTCCGTATG
* *
17888561 CTTAGACTGGGAATGAACTCTGTATAACTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * *
17888626 CGGCCAGA-GGGTA-GATGCGCAAGCTGGGGATCGGTCGGGTCTCCTTTTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* **
17888689 TGCTGCCGCAACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAACTTTGTATG
131 TGCTG-C-C-ACCCTCAGTCTGAGTCTGATCTTAGACT-GGAATGAACTCCGTATG
** * * *
17888744 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAG-
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * **
17888808 CGGCCAGAGGGGTAGGATGCGTAAGC-GGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGAT-C
66 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
17888871 --CTGCCACCCTCGGT-TTAGTCAGATCTTAGACTGAAATGAACTCCGTATG
131 TGCTGCCACCCTCAGTCTGAGTCTGATCTTAGACTGGAATGAACTCCGTATG
* * *
17888920 CTTAGATTGGGAATGAACTCCGTATAAATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * * *
17888985 CAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGCCGGGTCTCCCTCTCCGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
17889050 TGGTGCCACAACCCTCAGTC-CAGTTTGATCTTAAACTGGATATGAACTCTGTATG
131 TGCTG-C-C-ACCCTCAGTCTGAGTCTGATCTTAGACTGGA-ATGAACTCCGTATG
17889105 C
1 C
17889106 CTAAGCCAAC
Statistics
Matches: 460, Mismatches: 63, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
176 89 0.19
177 79 0.17
178 94 0.20
179 2 0.00
180 3 0.01
181 2 0.00
182 12 0.03
183 132 0.29
184 33 0.07
185 14 0.03
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (182 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACCCTCAGTCTGAGTCTGATCTTAGACTGGAATGAACTCCGTATG
Found at i:17888768 original size:26 final size:26
Alignment explanation
Indices: 17888718--17888770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17888708 CTGATCTGAT
**
17888718 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17888744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17888770 C
1 C
17888771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17889047 original size:361 final size:361
Alignment explanation
Indices: 17888383--17889105 Score: 1017
Period size: 361 Copynumber: 2.0 Consensus size: 361
17888373 CCGATCCGAT
* * *
17888383 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGT
17888448 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * *
17888513 GCTACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
131 GCCACCCTCAGTCCGAGTCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
17888578 CTCTGTATAACTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGTAGATG
196 CTCCGTATAAATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGCAGATG
** * * * * * *
17888643 CGCAAGCTGGGGATCGGTCGGGTCTCCTTTTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGT
261 CGCAAGCCAGGGATCGGCCGGGTCTCCCTCTCCGTGCTACCGATCCTGCTGCCACAACCCTCAGT
* * *
17888708 -CTGATCTGATCTTAGACTGGGA-ATGAACTTTGTATG
326 CCAG-TCTGATCTTAAACT-GGATATGAACTCTGTATG
* **
17888744 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGT
* * * * *
17888808 CGGCCAGAGGGGTAGGATGCGTAAG-CGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCG-TCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** *
17888872 TGCCACCCTCGGT-TTAGTCAGATCTTAGACT-GAAATGAACTCCGTATGCTTAGATTGGGAATG
130 TGCCACCCTCAGTCCGAGTC-GATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATG
*
17888935 AACTCCGTATAAATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAG
194 AACTCCGTATAAATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGA-GGGCA-
*
17889000 GATGCGCAAGCCAGGGATCGGCCGGGTCTCCCTCTCCGTGCTACCGATCCTGGTGCCACAACCCT
257 GATGCGCAAGCCAGGGATCGGCCGGGTCTCCCTCTCCGTGCTACCGATCCTGCTGCCACAACCCT
*
17889065 CAGTCCAGTTTGATCTTAAACTGGATATGAACTCTGTATG
322 CAGTCCAGTCTGATCTTAAACTGGATATGAACTCTGTATG
17889105 C
1 C
17889106 CTAAGCCAAC
Statistics
Matches: 319, Mismatches: 37, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
359 94 0.29
360 79 0.25
361 144 0.45
362 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (361 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGT
CGGCCAGAGGGGCAGGATGCGTAAGTCGAGGATCGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
GCCACCCTCAGTCCGAGTCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATAAATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGCAGATG
CGCAAGCCAGGGATCGGCCGGGTCTCCCTCTCCGTGCTACCGATCCTGCTGCCACAACCCTCAGT
CCAGTCTGATCTTAAACTGGATATGAACTCTGTATG
Found at i:17893624 original size:26 final size:26
Alignment explanation
Indices: 17893595--17893647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893585 CCGATCTGAT
17893595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17893621 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17893647 C
1 C
17893648 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17893810 original size:26 final size:26
Alignment explanation
Indices: 17893774--17893824 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17893764 CCGGTTTGAT
* *
17893774 CTTATATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17893800 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
17893825 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17893901 original size:179 final size:178
Alignment explanation
Indices: 17893576--17893906 Score: 452
Period size: 179 Copynumber: 1.8 Consensus size: 178
17893566 TGCTGCCACA
*
17893576 ACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
* ** * *
17893641 TGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGATGCTCAGCAGGCCAGAGGCACAGGATGC
66 CGTATAACTAAGTCAACCCACGAAAGGAACGTGCGGACGCTCAGCAGGCCAGAGG-ACAGGATGC
*
17893706 ACAAGTCGGAGATCGATCGGGTACCCTTCTACGTGCTGCTGACCTTGCT
130 ACAAGCCGGAGATCGATCGGGTACCCTTCTACGTGCTGCTGACCTTGCT
* * * * *
17893755 ACCCTCGGTCCGGTTTGATCTTATATTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
*
17893820 CGTATAACTAAGTCAACCCACGAAATGAACGTGCAGG-CGCTCAGTC-GGCCAAAGAGG-CAGGA
66 CGTATAACTAAGTCAACCCACGAAAGGAACGTGC-GGACGCTCAG-CAGGCC--AGAGGACAGGA
** *
17893882 TGCGTAAGCCGGGGATCGATCGGGT
127 TGCACAAGCCGGAGATCGATCGGGT
17893907 CTCCCTTTGT
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
179 124 0.94
180 3 0.02
181 5 0.04
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (178 bp):
ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAAGGAACGTGCGGACGCTCAGCAGGCCAGAGGACAGGATGCA
CAAGCCGGAGATCGATCGGGTACCCTTCTACGTGCTGCTGACCTTGCT
Found at i:17894707 original size:26 final size:26
Alignment explanation
Indices: 17894671--17894723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17894661 CTGGTCCGAT
17894671 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17894697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17894723 C
1 C
17894724 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17895606 original size:26 final size:26
Alignment explanation
Indices: 17895570--17895620 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17895560 TCGGTCTGAT
17895570 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17895596 CTTAGACTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
17895621 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17895785 original size:26 final size:26
Alignment explanation
Indices: 17895749--17895799 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17895739 CTGGTCTGAT
17895749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17895775 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17895800 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17895870 original size:179 final size:181
Alignment explanation
Indices: 17895562--17895959 Score: 527
Period size: 179 Copynumber: 2.2 Consensus size: 181
17895552 CCCTCAGTTC
*
17895562 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATACCTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
17895627 GTCAACCCAAGAAACGAACGTGCAAGCGCATAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
66 GTCAACCCAAGAAACGAACGTGCAAGCGCATAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * *
17895692 ATTG-GCTGGGTC-CCTCTCTACATGCTGCCAATC-TTG-CTACCCTCGGTCT
131 ATCGATC-GGGTCTCC-CTCTACATGCTGCCAATCGTTGCCAACCCTCGGTCT
* *
17895741 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAA
1 GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
* ** ** * * ** * *
17895806 GTCAACCCACGAAACGGGCGTGCGGGTG-TTCAGTTGGCCAGAGGGGCAGGATGTGCATGCCGGG
66 GTCAACCCAAGAAACGAACGTGCAAGCGCAT-AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* *
17895870 GATCGATCGGGTCTCCCTCTGCGTGCTGCCAATCTGTTGCCACAACCCTCGGTCT
130 GATCGATCGGGTCTCCCTCTACATGCTGCCAATC-GTTG-C-CAACCCTCGGTCT
*
17895925 GGTCTGATCTTAGACTGGTAATGAACTCCATATGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCATATGC
17895960 CTAAGCCAAT
Statistics
Matches: 190, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
178 1 0.01
179 138 0.73
180 3 0.02
181 3 0.02
184 45 0.24
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (181 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
GTCAACCCAAGAAACGAACGTGCAAGCGCATAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
ATCGATCGGGTCTCCCTCTACATGCTGCCAATCGTTGCCAACCCTCGGTCT
Found at i:17898534 original size:26 final size:26
Alignment explanation
Indices: 17898498--17898550 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17898488 CCAGTTTGAT
17898498 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17898524 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17898550 C
1 C
17898551 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17898810 original size:179 final size:179
Alignment explanation
Indices: 17898494--17898888 Score: 493
Period size: 179 Copynumber: 2.2 Consensus size: 179
17898484 CGATCCAGTT
* * **
17898494 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
1 TGATCTTAGACTCGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCTGTATAACTAAGTCA
* * ** * * *
17898559 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATTG
66 ACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAAGGGCAGGATGCACAAGCCGGGGATCG
* * *
17898624 GCCGGGTCCCCCTCTGCATGATGCCGATCCTGCAACCCTCAGTCTGGTC
131 ACCGGGTCACCCTCTGCATGATACCGATCCTGCAACCCTCAGTCTGGTC
*
17898673 TGATCTTAGACTCGGAATGAGCTTCGTATGCTTAGACAGGGAATGAACTCTGTATAACTAAGTCA
1 TGATCTTAGACTCGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCTGTATAACTAAGTCA
* * * *
17898738 ACCCATGAAACGAGCGTGCAGGCACTCAACCGACGAGAAGGGCAGGATGCGCAAGCTGGGGATCG
66 ACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAAGGGCAGGATGCACAAGCCGGGGATCG
* * * * *
17898803 ACCGGGTCACCCTCTGCGTGCTACCGATCCTACTACCGTAACCCTCAGTCCGATC
131 ACCGGGTCACCCTCTGCATGATACCGAT-C--CT---GCAACCCTCAGTCTGGTC
* * *
17898858 AGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGATCTTAGACTCGGAATGAACTTCGTATGC
17898889 CTAAGCCAAC
Statistics
Matches: 182, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
179 137 0.75
180 1 0.01
182 2 0.01
185 42 0.23
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (179 bp):
TGATCTTAGACTCGGAATGAACTTCGTATGCTTAGACAGGGAATGAACTCTGTATAACTAAGTCA
ACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAAGGGCAGGATGCACAAGCCGGGGATCG
ACCGGGTCACCCTCTGCATGATACCGATCCTGCAACCCTCAGTCTGGTC
Found at i:17899611 original size:26 final size:26
Alignment explanation
Indices: 17899575--17899627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17899565 CCGATCCGAT
* *
17899575 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17899601 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17899627 C
1 C
17899628 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17899786 original size:26 final size:26
Alignment explanation
Indices: 17899757--17899807 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17899747 CGGTCCGATT
* *
17899757 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTACGTATG
*
17899783 CTTAGACTAGGAATGAACTACGTAT
1 CTTAGACTAGGAAAGAACTACGTAT
17899808 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTACGTATG
Found at i:17901704 original size:26 final size:26
Alignment explanation
Indices: 17901668--17901717 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17901658 CCAGTCTGAT
17901668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17901694 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17901718 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17902606 original size:26 final size:26
Alignment explanation
Indices: 17902567--17902619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17902557 CCAGTCTGAT
17902567 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17902593 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17902619 C
1 C
17902620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17902958 original size:25 final size:26
Alignment explanation
Indices: 17902929--17902977 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17902919 CCGTCCGATT
*
17902929 TTAGA-TGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
17902954 TTAGACTGGGAATAAACTCTGTAT
1 TTAGACTGGGAATAAACTCCGTAT
17902978 AACTAACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:17903855 original size:26 final size:26
Alignment explanation
Indices: 17903826--17903878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17903816 CTGATCCGAT
* * *
17903826 CTTAGACTTGGAATGTACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17903852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17903878 C
1 C
17903879 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17904204 original size:154 final size:150
Alignment explanation
Indices: 17903852--17904215 Score: 369
Period size: 154 Copynumber: 2.4 Consensus size: 150
17903842 ACTCTGTATG
* **
17903852 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGGGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* *
17903917 CGGCCAGAGGGCAGGATAAGCAAGTCGGGGATCGATCGGTTCCCCCTCTGCATGCTTCTGATCCT
66 CGG-C-GAGGGCAGGATAAGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTACTGATCCT
* *
17903982 TTTACCCTCGATCTGATCCAAT
129 GTAACCCTCGATCTGATCCAAT
** * *
17904004 CTTAGACTGGGAATGAACTCCGTATAACTGAGTCAGCCCACGAAACGAGCGTACGGGCGCTCAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTC-AG
*** * *
17904069 TC-G-G-GGGCAGGATGCTCAAGTCGGGGATCGATCGGGTCTCCCTCTACGCGCTGCCGATACTG
65 TCGGCGAGGGCAGGATAAGCAAGTCGGGGATCGATCGGGTCCCCCTCT--GC-ATG-C--TACTG
* * **
17904131 CTGCC-GTAACCCTC-AGTCTGGTCTGAT
124 AT-CCTGTAACCCTCGA-TCTGATCCAAT
* * * * *
17904158 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGGACGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
17904216 AGGCACTACA
Statistics
Matches: 174, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
148 36 0.21
149 1 0.01
150 2 0.01
151 2 0.01
152 57 0.33
153 5 0.03
154 69 0.40
155 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (150 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCGAGGGCAGGATAAGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTACTGATCCTGT
AACCCTCGATCTGATCCAAT
Found at i:17904907 original size:26 final size:26
Alignment explanation
Indices: 17904869--17904921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17904859 CTGGTCCGAT
*
17904869 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17904895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17904921 C
1 C
17904922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17906783 original size:900 final size:898
Alignment explanation
Indices: 17905039--17906961 Score: 2664
Period size: 900 Copynumber: 2.1 Consensus size: 898
17905029 ACCCTAGATT
* *** * *
17905039 TGGTCTAATCTTAGACTGGGAATGAACTTTTTATGCTTAGACT-GGAATGAACTCCGTAT-AACT
1 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCA-T
* * * *
17905102 AAGTCGACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
65 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGG
* * * * * * *
17905167 AGATCAACCGATTCTCCCTCTGTGTACTGTCGATCCTGCTACCGCATCCCTCTATTTGGTCTGAT
130 AGATCAACCGAGTCTCCCTCTGTGTA-TGTCAATCCTGCTACCACAACCCTCGATTCGGTCCGAT
* *
17905232 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGGCGGGCGGGCACT
194 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACAGGCGGGCGGGCACT
* * *
17905297 ATGCCGACCACAGAGGCGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
259 ACGCCGACCACAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGATAGGTGGGTTTAGGCAC
* * *
17905362 ATCTTCATATTTTTGCCATGCCAATGCCTTTATCGTGGCTTGTAAATTCATACAATGGTCCCTTA
324 ATCTTCATATTTCTGCCATGCCAATGCCTTTATCATGGCTGGTAAATTCATACAATGGTCCCTTA
* * **
17905427 AGCCTTCATGTGAATTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTT
389 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
* * * * *
17905492 TTACGGTTTGGGATTTTTTAAAATTTTTTTAGCAGGATTTTTGGCCCCAAACTTGGTAGACGTGA
454 TTACGGTTTAGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGCCCCCAAACTTGGTAGACGTGA
* * * *
17905557 TCCTTTTATTTTTTTTGGTATGCACAAAAAAAATCAACTAAAAAGTCGAAGTGTATAAGATTTTG
519 TCCTTGTATTTTTTTTGGTATCCACAAAAAAAATCAACTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
17905622 GGACCATTTGAAAAAAGTGTTCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
584 GGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATAGCTACTGGCAACAAACCTGTAAA
* *
17905687 ATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGATTTGATGAGGGATAGGGGTCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGATTTGATGAGGGATAGGGGACCAATATA
*
17905752 AGGGCCAAGTACCAGCACCCCTCGCACATCATGTGCGCACACCCCCCCAAACCACCCCCAATCGC
714 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-AACCACCCCCAATCGC
*
17905817 CAGAACCCCAATGCCTTCAGTCAGGTTATTCGGCGATGCTCCGACGATGGTGCCCCAAGCAAAAA
778 CAGAACCCCAATGCCTTCAGTCAGGTTATCCGGCGATGCTCCGACGATGGTGCCCCAAGCAAAAA
**
17905882 AAAATGTGGCACCAGCAAATGCCCGAGCCCAACATGTGCTACCGCAACCCCCGGTC
843 AAAATACGGCACCAGCAAATGCCCGAGCCCAACATGTGCTACCGCAACCCCCGGTC
17905938 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCATA
1 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCATA
* * * *
17906003 AGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGGGGCAGGATGCGCAAGGAGGG
66 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGGA
*** * * * * *
17906068 GATCGGTCGAGTCTCCCTCTACGTGT-T-TCCAATCTTGCTGCCATAACCCTCGGTTCGGTCCGC
131 GATCAACCGAGTCTCCCTCT--GTGTATGT-CAATCCTGCTACCACAACCCTCGATTCGGTCCGA
* * * * *
17906131 TCTTAGACTAGGAATGACCTCTGTATGCCTAAGCCAA-CAGATGAAACGAGCAGGCGGGCTGGCA
193 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATC-GACGAAACGAACAGGCGGGCGGGCA
* * * *
17906195 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGATAGGTGGGTTTAGGC
257 CTACGCCGACCACAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGATAGGTGGGTTTAGGC
* * *
17906260 ATATCTTCATATTTCTGCCATGCCAATTCCTTTTTCATGGCTGGTAAATTCATACAATGGTCCCT
322 ACATCTTCATATTTCTGCCATGCCAATGCCTTTATCATGGCTGGTAAATTCATACAATGGTCCCT
17906325 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTCAAAACT
387 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
17906389 TTTTACGGTTTAGGATTTTTTAAAATTTTTTTA-AATAGAGTTTTGCCCCCAAACTTGGTAGACG
452 TTTTACGGTTTAGGATTTTTTAAAATTTTTTTAGAA-AGAGTTTTGCCCCCAAACTTGGTAGACG
* * *
17906453 TGATCCTTGTATTTTTTTTTGGCT-TCCACAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGA
516 TGATCCTTGTA-TTTTTTTTGG-TATCCACAAAAAAAATCAACTAAAAACTCGAAGTGTACAAGA
* * * *
17906517 TTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTTAATAGCTACTGGCAACAAACTT
579 TTTTGGGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATAGCTACTGGCAACAAACCT
* *
17906582 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCA
644 GTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGATTTGATGAGGGATAGGGGACCA
* * **
17906647 GTATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTC-GGC-CCCCCA
709 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CAACCACCCCCA
* * * ** * ***
17906710 AT-GCCGGAACCCCAATG-CTGTCAGTCAGGTTCTCCGGTGATGCTCCGGTGGTGGTGCCCTGGG
773 ATCGCCAGAACCCCAATGCCT-TCAGTCAGGTTATCCGGCGATGCTCCGACGATGGTGCCCCAAG
* * * * * ** *
17906773 CGAAAAAAAAATACGGCAGCTGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
837 C-AAAAAAAAATACGGCACCAGCAAATGCCCGAGCCCAACATGTGCTACCGCAACCCCCGGTC
* * *
17906836 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
1 TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCATA
* * * *
17906901 AGTTAACCCACGAAACAAGCGTGCGGGTGCTCTGCCGGCCAGAGGGGCAGGATGCGCAAGC
66 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
17906962 CGAGAATCGG
Statistics
Matches: 900, Mismatches: 112, Indels: 25
0.87 0.11 0.02
Matches are distributed among these distances:
896 2 0.00
897 49 0.05
898 176 0.20
899 117 0.13
900 549 0.61
901 3 0.00
902 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (898 bp):
TGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCATA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGGA
GATCAACCGAGTCTCCCTCTGTGTATGTCAATCCTGCTACCACAACCCTCGATTCGGTCCGATCT
TAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACAGGCGGGCGGGCACTAC
GCCGACCACAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGATAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCCATGCCAATGCCTTTATCATGGCTGGTAAATTCATACAATGGTCCCTTAAG
CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT
ACGGTTTAGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGCCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTTTTGGTATCCACAAAAAAAATCAACTAAAAACTCGAAGTGTACAAGATTTTGGG
ACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATAGCTACTGGCAACAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGATTTGATGAGGGATAGGGGACCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAACCACCCCCAATCGCCAG
AACCCCAATGCCTTCAGTCAGGTTATCCGGCGATGCTCCGACGATGGTGCCCCAAGCAAAAAAAA
ATACGGCACCAGCAAATGCCCGAGCCCAACATGTGCTACCGCAACCCCCGGTC
Found at i:17906874 original size:26 final size:26
Alignment explanation
Indices: 17906845--17906897 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906835 CTGGTCCGAT
17906845 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17906871 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17906897 C
1 C
17906898 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17908883 original size:26 final size:26
Alignment explanation
Indices: 17908847--17908899 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17908837 CCAATCTGAT
17908847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17908873 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17908899 C
1 C
17908900 CTAAGGTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17909055 original size:26 final size:26
Alignment explanation
Indices: 17909026--17909076 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17909016 CTGATCCGAT
17909026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17909052 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17909077 AACTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17909181 original size:179 final size:179
Alignment explanation
Indices: 17908844--17909185 Score: 459
Period size: 179 Copynumber: 1.9 Consensus size: 179
17908834 TGTCCAATCT
* ** **
17908844 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGGTAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGCCAA
* * *
17908909 CCCATGAAATGAGCGTGCGGGGGCTCAACCGGCCAGAAGGGCAGGATGCACAAGCCGAAGATCGA
66 CCCACGAAACGAGCGTGCAGGGGCTCAACCGGCCAGAAGGGCAGGATGCACAAGCCGAAGATCGA
* * * *
17908974 TCGGGTCCCCCTCGGCATGCTGCCGATCCTGCTACCCTTGGTCTGATCC
131 CCGGGTCCCCCTCAGCATACTACCGATCCTGCTACCCTTGGTCTGATCC
*
17909023 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATAACTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGCCAA
* * * * *** **
17909088 CCCACGAAACGAGCGTGCAGGTGCTCAGCCGGGCAGAGGGGCAGGATGTGTAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCAGGGGCTCAACCGGCCAGAAGGGCAGGATGCACAAGCCGAAGATCGA
* * *
17909153 CCTGGTCTCCCTCAGCGTACTACCGATCCTGCT
131 CCGGGTCCCCCTCAGCATACTACCGATCCTGCT
17909186 GTGGCAAACC
Statistics
Matches: 138, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
179 138 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.20
Consensus pattern (179 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGCCAA
CCCACGAAACGAGCGTGCAGGGGCTCAACCGGCCAGAAGGGCAGGATGCACAAGCCGAAGATCGA
CCGGGTCCCCCTCAGCATACTACCGATCCTGCTACCCTTGGTCTGATCC
Found at i:17910140 original size:26 final size:26
Alignment explanation
Indices: 17910100--17910150 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17910090 CTGGTCCAAT
*
17910100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17910126 CTTAGACTGGAAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
17910151 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17910240 original size:178 final size:181
Alignment explanation
Indices: 17909924--17910311 Score: 466
Period size: 178 Copynumber: 2.1 Consensus size: 181
17909914 GATTCGATCA
** * * **
17909924 TAGACTGGGAATGAACTCTATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGTCAACCCAT
* * * * * *
17909989 GAAATGGGCGTACGGGCGCTAAGCCGGCCAGAAGGGCAGGATGCACAAGCTGGGGATCGGTCGGG
66 GAAACGAGCCTACGAGCGCTAAGCCGGCCAGAAGGGCAGGATGCACAAGCTGGGGATCAGCCGGG
* * * * *
17910054 TCCCCCTCTG-TTGTTGCCGATC-CT-GCTACCCTCGGTCTGGT-CCAATCT
131 TCCCCCTCTGCGTGCTG-CGATCTCTCACAACCCTCAGTCTGGTACCAATCT
17910102 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGTCAACCCAT
* * *
17910167 GAAACGAGCCTGC-AGCGCTCAGCCGGCCAG-AGGGCAGGATGCGCAAG-TCGGGGATCAGCCGG
66 GAAACGAGCCTACGAGCGCTAAGCCGGCCAGAAGGGCAGGATGCACAAGCT-GGGGATCAGCCGG
*
17910229 GTTCTCCCCTCTGCGTGCTGCGATCTCTACCACAACCCTCAGTCTGGTACTAATCT
130 G-TC-CCCCTCTGCGTGCTGCGATCTCT--CACAACCCTCAGTCTGGTACCAATCT
17910285 TAGACTGGGAATGAAACTCCGTTATGC
1 TAGACTGGGAATG-AACTCCG-TATGC
17910312 CTAAGCCAAC
Statistics
Matches: 178, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
175 1 0.01
176 28 0.16
177 17 0.10
178 81 0.46
179 6 0.03
182 14 0.08
183 19 0.11
184 7 0.04
185 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (181 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATAACTAAGTCAACCCAT
GAAACGAGCCTACGAGCGCTAAGCCGGCCAGAAGGGCAGGATGCACAAGCTGGGGATCAGCCGGG
TCCCCCTCTGCGTGCTGCGATCTCTCACAACCCTCAGTCTGGTACCAATCT
Found at i:17911210 original size:26 final size:26
Alignment explanation
Indices: 17911172--17911222 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17911162 CTGGTCTGAT
17911172 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17911198 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17911223 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17911277 original size:179 final size:179
Alignment explanation
Indices: 17910977--17911382 Score: 510
Period size: 179 Copynumber: 2.2 Consensus size: 179
17910967 TGTCACAACG
* * * *
17910977 CTCGGTCCGGCCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACCTGGAATAAACTCCGT
1 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCC-TATGCTTAGACCTGGAATAAACTCCGT
**
17911042 ATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCA
65 ATAACTAAGTCAACCCACGAAATGAACGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCA
* *
17911107 AGCCGGCGATCGGTCGGGTCCCCCTCTACGTGCTACCAATCCTGCT-ACC
130 AGCCGGCGATCGGCCGAGTCCCCCTCTACGTGCTACCAATCCTGCTCACC
*
17911156 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA-CTGGGAATGAACTCCG
1 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCC-TATGCTTAGACCT-GGAATAAACTCCG
** * * *
17911220 TATAACTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGC
64 TATAACTAAGTCAACCCACGAAATGAACGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGC
* * * * * * **
17911285 AAGTCGGGGATCGGCCGAGTCTCCCTTTGCGTGCTGCTGATCCTGCTGCCGCAACC
129 AAGCCGGCGATCGGCCGAGTCCCCCTCTACGTGCTACCAATCCTGCT----C-ACC
* *
17911341 CTCGGTCTGGTCTGATCTTAGGCTATGAATGAACTCCTATGC
1 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCTATGC
17911383 CTAAGCCAAC
Statistics
Matches: 195, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
178 2 0.01
179 150 0.77
184 5 0.03
185 38 0.19
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (179 bp):
CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCTATGCTTAGACCTGGAATAAACTCCGTA
TAACTAAGTCAACCCACGAAATGAACGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAA
GCCGGCGATCGGCCGAGTCCCCCTCTACGTGCTACCAATCCTGCTCACC
Found at i:17913038 original size:26 final size:26
Alignment explanation
Indices: 17913009--17913058 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17912999 CGGTCTGATT
17913009 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17913035 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17913059 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17913216 original size:26 final size:26
Alignment explanation
Indices: 17913187--17913237 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17913177 CTAGTCTGAT
*
17913187 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17913213 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
17913238 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17913328 original size:179 final size:179
Alignment explanation
Indices: 17913001--17913341 Score: 452
Period size: 179 Copynumber: 1.9 Consensus size: 179
17912991 CCTCGGTCCG
* **
17913001 GTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAG
* * * * *** *
17913066 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTTGCTAGAGGGGCATGATGCGCAAGCTGGGGA
66 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCACAGGGGCATGATGCGCAAACCAAGAA
*
17913131 TCGACCGGGTCCCCCTCTGTGCGCTGTCAATCTTCTTACCCTCAGTCTA
131 TCGACCGGGTCCCCCTCTGTGCGCTGTAAATCTTCTTACCCTCAGTCTA
* * *
17913180 GTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATAACTAAG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAG
* * * *
17913245 TCAACCCATGAAATGATCGTGCGGGTGCTCAG-TCGGCCACAGGGGCAT-ACTGCGTAAACCAAG
66 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GGCCACAGGGGCATGA-TGCGCAAACCAAG
* * *
17913308 AATCGATCGGGTCTCCCTCTGTGTGCTGTAAATC
129 AATCGACCGGGTCCCCCTCTGTGCGCTGTAAATC
17913342 CTACAGCTGC
Statistics
Matches: 138, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
178 2 0.01
179 136 0.99
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (179 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAG
TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCACAGGGGCATGATGCGCAAACCAAGAA
TCGACCGGGTCCCCCTCTGTGCGCTGTAAATCTTCTTACCCTCAGTCTA
Found at i:17914375 original size:179 final size:184
Alignment explanation
Indices: 17914072--17914485 Score: 507
Period size: 179 Copynumber: 2.3 Consensus size: 184
17914062 GTGCTGCCGC
* * * *
17914072 AACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACT-TCGTAAGCCTAGACTAGGAATGAAC
1 AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCT-GTATGCCTAGACTAGGAATGAAC
* * ** * *
17914136 TGCGTATGCCTAAGTCAACCCACGAAACGACCATACGGGCACTCGGCCGGCCAGAGGGGCAGGAT
65 TCCATATAACTAAGTCAACCCACGAAACGACCATACGGGCACTCAGCCGGCCAAAGGGGCAGGAT
*
17914201 ACGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGTTGATC-T-TG-C-T
130 ACGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGCTGATCTTCTGCCAT
* * * *
17914252 -ACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAGACTAGGAATGAACT
* * * * * *
17914316 CCATATAACTAAGTCAACTCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCAGGTTG
66 CCATATAACTAAGTCAACCCACGAAACGACCATACGGGCACTCAGCCGGCCAAAGGGGCAGGATA
* * ***
17914381 CGCAAGCCGGGGATCGATCGGGTCTCCCTCTGTGTGCTGCTGATCTTGCTGCCAT
131 CGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGCTGATCTT-CTGCCAT
* * *
17914436 AACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTA
1 AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTA
17914486 AGCCAACCGA
Statistics
Matches: 195, Mismatches: 32, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
179 146 0.75
180 2 0.01
182 2 0.01
183 1 0.01
184 1 0.01
185 43 0.22
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAGACTAGGAATGAACT
CCATATAACTAAGTCAACCCACGAAACGACCATACGGGCACTCAGCCGGCCAAAGGGGCAGGATA
CGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGCTGATCTTCTGCCAT
Found at i:17915437 original size:153 final size:155
Alignment explanation
Indices: 17915200--17915536 Score: 401
Period size: 153 Copynumber: 2.2 Consensus size: 155
17915190 ACTTCGTATG
* * ** * *
17915200 CTTAGACTGGGAATAAACTCTGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGAGCTCAGC
* * * * * * *
17915265 CGGCCAGAGGGGTAGGATGCGTAAGTCGGGGATCGA-TCGGGTCCCCCTCTGTGCGCTATCAATC
66 CGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGACT-AGGTCCCCCTCTGCGCGCTACCAATC
* *
17915329 CT-CT-TACCCTCGGTCCAGTCTAAT
130 CTGCTCAACCCTCAGTCCAGTCTAAT
* *
17915353 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAATGAGCATGCGGGAGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGAGCTCAGC
* * *
17915418 CGGCCAGAAGGGCATGATGCGTAAGCCAGGGATCGACTAGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGACTAGGTCCCCCTCTGCGCGCTACCAATCC
** *
17915483 TGCTGCCACAACCCTCAGTCTGGTCTGAT
131 TGCT----CAACCCTCAGTCCAGTCTAAT
17915512 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17915537 TCCTAAGCCA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
153 111 0.72
154 3 0.02
159 40 0.26
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGAGCTCAGC
CGGCCAGAAGGGCAGGATGCGTAAGCCAGGGATCGACTAGGTCCCCCTCTGCGCGCTACCAATCC
TGCTCAACCCTCAGTCCAGTCTAAT
Found at i:17919632 original size:26 final size:25
Alignment explanation
Indices: 17919562--17919632 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
17919552 CTGGTCCAAT
*
17919562 CTTAGACTAGAATGAACTTCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
17919587 CTTAGACTAGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
17919612 CTTAGACTAGGAATGAACTCC
1 CTTAGACTA-GAATGAACTCC
17919633 ATATAACTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 33 0.75
26 11 0.25
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:17920533 original size:26 final size:26
Alignment explanation
Indices: 17920482--17920534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17920472 CCGGTCCGAT
*
17920482 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17920508 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17920534 C
1 C
17920535 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17920697 original size:26 final size:26
Alignment explanation
Indices: 17920661--17920710 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17920651 TTGATCTGAT
17920661 CTTAGAATGGGAATGAACTACGTACG
1 CTTAGAATGGGAATGAACTACGTACG
* *
17920687 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGAATGGGAATGAACTACGTA
17920711 TAACTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTACGTACG
Found at i:17922561 original size:26 final size:26
Alignment explanation
Indices: 17922525--17922575 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17922515 CTGGTCTGAT
*
17922525 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
17922551 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
17922576 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17923450 original size:26 final size:26
Alignment explanation
Indices: 17923414--17923466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17923404 CTGGTCTGAT
*
17923414 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17923440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17923466 C
1 C
17923467 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17923637 original size:26 final size:27
Alignment explanation
Indices: 17923594--17923646 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
17923584 TGATCCAATT
17923594 TTAGACTGGGGAATGAACTCCATATGC
1 TTAGACTGGGGAATGAACTCCATATGC
*
17923621 TTAGACT-GGGAATGAACTCCGTATGC
1 TTAGACTGGGGAATGAACTCCATATGC
17923647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (27 bp):
TTAGACTGGGGAATGAACTCCATATGC
Found at i:17924824 original size:26 final size:26
Alignment explanation
Indices: 17924788--17924838 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17924778 CTGGTTCGAT
17924788 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
17924814 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
17924839 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17925958 original size:178 final size:179
Alignment explanation
Indices: 17925642--17926028 Score: 456
Period size: 178 Copynumber: 2.1 Consensus size: 179
17925632 GGTTTGATCC
* **
17925642 TAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCATATGCCTAAGTCAACCCACG
1 TAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCATATAACTAAGTCAACCCACG
* * ** *** *
17925707 AAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAAGATGTGTAAGCTGAGGATCGATCGAGT
66 AAACGAGCGTGCGGGCGCCCAACCGACCAGAGGGCCAAGATGCACAAGCCGAGGATCGATCGAGT
*
17925772 CCCCCTCTGCGTGCTGTCGATCCTGCT-ACCCTCGGTCCGATCCAATCT
131 CCCCCTCTGCGTGCTGTCGATCCTGCTCACCCTCAGTCCGATCCAATCT
* ** *
17925820 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATAACTAAGTCTACCCAC
1 TAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATGAAC-TCATATAACTAAGTCAACCCAC
* ** * * *
17925885 GAAACGAGCGTGCGGGTGCCCAGTCGACCAGA-GGCCAAGATGCACAAGCCGGGGATCGGT-TAC
65 GAAACGAGCGTGCGGGCGCCCAACCGACCAGAGGGCCAAGATGCACAAGCCGAGGATCGATCGA-
* * **
17925948 GTCTCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTAGTCCGATCTGATCT
129 GTCCCCCTCTGCGTGCTGTCGATCCTGCT----C-ACCCTCAGTCCGATCCAATCT
17926004 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
17926029 CTAAGCTAAT
Statistics
Matches: 175, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
177 1 0.01
178 88 0.50
179 44 0.25
184 42 0.24
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (179 bp):
TAGACTAGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCATATAACTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCCCAACCGACCAGAGGGCCAAGATGCACAAGCCGAGGATCGATCGAGT
CCCCCTCTGCGTGCTGTCGATCCTGCTCACCCTCAGTCCGATCCAATCT
Found at i:17927260 original size:432 final size:427
Alignment explanation
Indices: 17926265--17927559 Score: 1934
Period size: 431 Copynumber: 3.0 Consensus size: 427
17926255 AAACTTTTTA
* * ** *
17926265 CGGTTCGGGATTTTTTAAAATTGTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATGC
1 CGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCC
* * * * *
17926330 TTGTATTTTTATTGGCCTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACATGATTTTGTGA
66 TTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
17926395 CCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTATTGGCTA-CGG-ACGGCAAACCTGTAAAA
131 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTA--GCAAACCTGTAAAA
*
17926458 GCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
194 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* **
17926523 GGGCCAAGTACCAGCACCAATCGCACATCATGTGCACACACCCCCCGGTCCCCCCCAATCATCGA
259 GGGCCAAG-ACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCCT-CCCCCCAATCATCGA
* *
17926588 AACCCCAATGCCGTCGGTAAGGTTCTCCGGTGATGGTGCCTCGGACGAAAAAAAAATATGGCACC
322 AACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGGTGCC-CGGACG-AAAAAAAATACGGCACC
* *
17926653 AGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCTTAAGTT
385 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAAGTT
*
17926696 CGGTTC-AGGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAAAAATGATC
1 CGGTTCGA-GATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATC
*
17926760 CTTGTATTTTTATTCGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTG
65 CTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTG
17926825 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGTAAAAT
130 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGTAAAAT
*
17926890 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAG
195 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
17926955 GGCCAAGAAGCAGCACCAATCGGACATCATGTGCGCACACCCCCCCCAATCACCCCCAATCATCG
260 GGCCAAG-ACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCC--TC-CCCCCAATCATCG
*
17927020 AAACCCCAATGCCGTCGGTTAGGTTCTCTGGTGATGGTGCACCGGACGAAAAAAAATACGGCACC
321 AAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGGTGC-CCGGACGAAAAAAAATACGGCACC
*
17927085 AGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTAAGTT
385 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAAGTT
* * *
17927128 TGGTTCGAGATTTTTTTAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGATAGAAATGATCC
1 CGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCC
* *
17927193 TTGTATTTTTATTGGCATGCACAAAAAAATTCAACAAAAAACCCGAAGTGTACAAGATTTTGTGA
66 TTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGA
17927258 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGTAAAATC
131 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGTAAAATC
*
17927323 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGG
196 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
17927387 GCCAAGACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGCCCCCCAATCGTCGAAACC
261 GCCAAGACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCCTCCCCCCAATCATCGAAACC
* * * *
17927451 CCAATGCCGCCGATCATATTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGACGAAAAAAAATAC
326 CCAATGCCGTCGGT--TA-------G-G-TTCTCCGGTGATGGTG-CCCGGACGAAAAAAAATAC
* *
17927516 GGCACCAGCATATGCCCGAGCCCAGCATGTGCTGCTGCAACCCT
379 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
17927560 CGATCTGGTT
Statistics
Matches: 791, Mismatches: 53, Indels: 34
0.90 0.06 0.04
Matches are distributed among these distances:
426 29 0.04
427 1 0.00
428 2 0.00
429 7 0.01
430 27 0.03
431 297 0.38
432 292 0.37
433 60 0.08
434 1 0.00
435 1 0.00
436 1 0.00
437 72 0.09
438 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (427 bp):
CGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAAATGATCC
TTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGACCAGCACCAATCGCACATCATGTGCGCACACCCCCCCCTCCCCCCAATCATCGAAACC
CCAATGCCGTCGGTTAGGTTCTCCGGTGATGGTGCCCGGACGAAAAAAAATACGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAAGTT
Found at i:17927604 original size:26 final size:26
Alignment explanation
Indices: 17927575--17927624 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17927565 TGGTTCGATG
17927575 TTAGACTGGGAATGAGA-TCCGTATGC
1 TTAGACTGGGAATGA-ACTCCGTATGC
17927601 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17927625 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17928499 original size:26 final size:26
Alignment explanation
Indices: 17928470--17928522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17928460 CCGGTCCGAT
*
17928470 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17928496 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17928522 C
1 C
17928523 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17928789 original size:178 final size:178
Alignment explanation
Indices: 17928451--17928789 Score: 466
Period size: 178 Copynumber: 1.9 Consensus size: 178
17928441 TGCTACCGTA
* * *
17928451 ACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** * *
17928516 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGGCCAGAAGGGTAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGGCCAGAAGGGCAGCATGC
* *
17928581 ACAAGCTAGGGATCGGTCGGGTCCCCCTCTGTTGCTGTCGATCCTGCT
131 ACAAGCGAGGGATCGGTCGAGTCCCCCTCTGTTGCTGTCGATCCTGCT
* * * *
17928629 ACCCTTGGTCCGATCTGATCCTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTT
1 ACCCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
17928694 CGTATAACTAAGTCAACCCAGGAAATGAGCGTACGGGTGCTT-AGTCGGCCAGAGGGGCAGCATG
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCG-TTCAGCCGGCCAGAAGGGCAGCATG
* *
17928758 CGCAAGCCGA-GGATCGGTCGAGTCTCCCTCTG
130 CACAAG-CGAGGGATCGGTCGAGTCCCCCTCTG
17928790 CATGCTACAG
Statistics
Matches: 139, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
178 135 0.97
179 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (178 bp):
ACCCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGTTCAGCCGGCCAGAAGGGCAGCATGC
ACAAGCGAGGGATCGGTCGAGTCCCCCTCTGTTGCTGTCGATCCTGCT
Found at i:17929567 original size:26 final size:26
Alignment explanation
Indices: 17929531--17929583 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17929521 CTGGTTCGAT
17929531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17929557 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17929583 C
1 C
17929584 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17929839 original size:153 final size:152
Alignment explanation
Indices: 17929557--17929846 Score: 357
Period size: 153 Copynumber: 1.9 Consensus size: 152
17929547 ACTCCGTATG
* *** * *
17929557 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
1 CTTAGACTGGAAATGAACTCCGTACAACTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * *
17929622 CGGCCATAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCTTTTTGCATGCTGTTGATCC
66 CAGCCAAAGGGGCAGGATGCACAAGCCAGGGATCGACCGGCTCCCTCTGTG-ATGCTGTCGATCC
*
17929687 TGTTACCCTTGGTCAGGTGTGAT
130 TGCTACCCTTGGTCAGGTGTGAT
* * * *
17929710 CTTAGACTGGAAATGAACTCCGTACAACTAAGTCAATCTATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGAAATGAACTCCGTACAACTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* **
17929775 CAGCCAAAGGGGCAGGATGCACAAGCCGGGGATCGGTCGAGTCTCCCTCTGTG-TGCTGTCGATC
66 CAGCCAAAGGGGCAGGATGCACAAGCCAGGGATCGACCG-G-CTCCCTCTGTGATGCTGTCGATC
17929839 CTGCTACC
129 CTGCTACC
17929847 ACAATCCTCG
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
153 105 0.92
154 1 0.01
155 8 0.07
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (152 bp):
CTTAGACTGGAAATGAACTCCGTACAACTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
CAGCCAAAGGGGCAGGATGCACAAGCCAGGGATCGACCGGCTCCCTCTGTGATGCTGTCGATCCT
GCTACCCTTGGTCAGGTGTGAT
Found at i:17930613 original size:26 final size:26
Alignment explanation
Indices: 17930584--17930636 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17930574 CCGGTTCGAT
* *
17930584 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17930610 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17930636 C
1 C
17930637 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17930798 original size:26 final size:26
Alignment explanation
Indices: 17930762--17930812 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17930752 TCGATTTGAT
*
17930762 CTTAAACTGGGAATGAATTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
17930788 CTTAGACTGGGAATGAACTCCATAT
1 CTTAAACTGGGAATGAACTCCATAT
17930813 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:17930989 original size:26 final size:26
Alignment explanation
Indices: 17930947--17931002 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
17930937 CTGGTCCAAT
* *
17930947 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17930973 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17930999 CTTA
1 CTTA
17931003 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17931010 original size:185 final size:179
Alignment explanation
Indices: 17930565--17931274 Score: 841
Period size: 179 Copynumber: 3.9 Consensus size: 179
17930555 TGCTGCCACA
* * * * *
17930565 ACCCTCGGTCCGGTTCGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTAGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** ** * * * *
17930630 CGTATGCCTAAGTCAACCCACGAAATAAGCGTACGGGTGCTTAGTCGGCCAGAGGGGCAGGATG-
66 CATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * *
17930694 AGCAAGCCGGGGATCGGTC-AGTCCCCCTCTGGGTGCTATCGATCCTGCT
131 A-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCT
* ** * *
17930743 ACCCTCGGTTCGATTTGATCTTAAACTGGGAATGAATTCCATATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
17930808 CATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGC
66 CATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* *
17930873 ACAAGCCGGGGATCGGTCGGGTCTCCCTCTATGTGCTGTCAATCCTGCT
131 ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCT
* * * * * *
17930922 ACCGCAACCTTCGGTCTGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTGTGAAT
1 A---C--CC-TCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
17930987 GAACTCCATAT-GCTTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAACCGGCCAGAGGGAC
60 GAACTCCATATAAC-TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
17931051 AGGATGCGCAAGCTGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGCCAATCCTGCT
124 AGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCT
* * *
17931107 ACCCTCGGTCCAATCTGATCTTAAACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * *
17931172 CGTATAACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGC
66 CATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * *
17931237 GCAAGCCGGGGATCGATCGGGTCTCTCTCTGTGTGCTG
131 ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTG
17931275 CTGATCCTAC
Statistics
Matches: 447, Mismatches: 75, Indels: 19
0.83 0.14 0.04
Matches are distributed among these distances:
178 128 0.29
179 163 0.36
180 3 0.01
182 2 0.00
184 3 0.01
185 148 0.33
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (179 bp):
ACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCT
Found at i:17931250 original size:364 final size:363
Alignment explanation
Indices: 17930563--17931274 Score: 1059
Period size: 364 Copynumber: 2.0 Consensus size: 363
17930553 TGTGCTGCCA
* *
17930563 CAACCCTCGGTCCGGTTCGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTAGGAATGAAC
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTAGGAATGAAC
* * * * ** *
17930628 TCCGTATGCCTAAGTCAACCCACGAAATAAGCGTACGGGTGCTTAGTCGGCCAGAGGGGCAGGAT
66 TCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGACAGGAT
* * * * * *
17930693 GAGCAAGCCGGGGATCGGTCAGTCCCCCTCTGGGTGCTATCGATCCTGCTACCCTCGGTTCGATT
131 GAGCAAGCCGGGGATCGGTCAGTCCCCCTCTGCGTGCTACCAATCCTGCTACCCTCGGTCCAATC
*
17930758 TGATCTTAAACTGGGAATGAATTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCA
196 TGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCA
17930823 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
261 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
*
17930888 GTCGGGTCTCCCTCTATGTGCTGTCAATCCTGCTACCG
326 ATCGGGTCTCCCTCTATGTGCTGTCAATCCTGCTACCG
* *
17930926 CAACCTTCGGTCTGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACT-GTGAATGAA
1 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTAG-GAATGAA
* * * * **
17930990 CTCCATATGCTTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAACCGGCCAGAGGGACAGGA
65 CTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGACAGGA
* * * *
17931055 TGCGCAAGCTGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCCTCGGTCCAA
130 TGAGCAAGCCGGGGATCGGTCA-GTCCCCCTCTGCGTGCTACCAATCCTGCTACCCTCGGTCCAA
*
17931120 TCTGATCTTAAACTGGGAATGAACTCCGA-ATGCTTAGACTGGGAATGAACTCCGTATAACTAAG
194 TCTGATCTTAAACTGGGAATGAACTCC-ATATGCTTAGACTGGGAATGAACTCCATATAACTAAG
* * * *
17931184 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
258 TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGA
* *
17931249 TCGATCGGGTCTCTCTCTGTGTGCTG
323 TCGATCGGGTCTCCCTCTATGTGCTG
17931275 CTGATCCTAC
Statistics
Matches: 310, Mismatches: 36, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
362 1 0.00
363 129 0.42
364 179 0.58
365 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (363 bp):
CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCATATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGACAGGAT
GAGCAAGCCGGGGATCGGTCAGTCCCCCTCTGCGTGCTACCAATCCTGCTACCCTCGGTCCAATC
TGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCA
ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCG
ATCGGGTCTCCCTCTATGTGCTGTCAATCCTGCTACCG
Found at i:17931479 original size:158 final size:158
Alignment explanation
Indices: 17931152--17931489 Score: 446
Period size: 158 Copynumber: 2.1 Consensus size: 158
17931142 ACTCCGAATG
** * **
17931152 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAAC
* * *
17931217 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCTCTCTCTGTGTGCTGCTGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCTCCCTCTGCGTGCTGCTGATCC
* **
17931282 TACTGCCACAACCCTCAATTCAGTTTGA
131 TACTGCCACAACCCTCAATCCAGTTAAA
* *
17931310 CATTAGGCTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTCAA
1 C-TTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAA
** * *
17931375 CCGGCCAG-GGGGCAGGATGCGTTAGCCAGGGATCGGTCGGGTCTCCCTCTGCGTGCT-ATCGAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCTCCCTCTGCGTGCTGCT-GAT
* * *
17931438 CCTACTGCCACAACCTTCGATCCGGTCTAAA
129 CCTACTGCCACAACCCTCAATCCAGT-TAAA
*
17931469 CTTAGACTGGGAGTGAACTCC
1 CTTAGACTGGGAATGAACTCC
17931490 ATATGGTTAG
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 1 0.01
158 87 0.56
159 67 0.43
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAAC
CGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCTCCCTCTGCGTGCTGCTGATCC
TACTGCCACAACCCTCAATCCAGTTAAA
Found at i:17931506 original size:26 final size:26
Alignment explanation
Indices: 17931470--17931520 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17931460 CGGTCTAAAC
*
17931470 TTAGACTGGGAGTGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* *
17931496 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
17931521 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:17931851 original size:522 final size:517
Alignment explanation
Indices: 17930788--17931817 Score: 1215
Period size: 522 Copynumber: 2.0 Consensus size: 517
17930778 ATTCCATATG
* * *
17930788 CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCACTCAAC
* * *
17930853 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCTCCCTCTATGTGCTGTCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGTCGGGTCTCCCTCTACGTGCTATCAATCC
* * * * * * *
17930918 TGCTACCGCAACCTTCGGTCTGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTGT
131 TACTACCACAACCTTCGATCCGGTCCAAACTTAGACTGGGAGTGAACTCCATATGCTTAGACTGG
* ** * * * * *
17930983 GAATGAACTCCATATGCTTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAACCGGCCAGAGG
196 GAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCCCAACCGACCAGAGG
* * * * * *
17931048 GACAGGATGCGCAAGCTGGGGATTGGTCAGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCCTC
261 GACAGGATGCGCAAGCCGGGCATCGATCAGGTCCCCCTCTGCATGCTACCAATCCTGCTACCCTC
* * * *
17931113 GGTCCAATCTGATCTTAAACTGGGAATGAACTCCGAATGCTTAGACTGGGAATGAACTCCGTATA
326 GATCCAATCTGATCTTAAACTGGGAATAAACTCCGAATGCGTAGACTGGGAATGAACTCCGTAGA
* * ** * **
17931178 ACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGC
391 ACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCAGGATGCAAAAGC
* * * ** *
17931243 CGGGGATCGATCGGGTCTCTCTCTGTGTGCTGCTGATCCTACTGCCACAACCCTCAATTCAGTTT
456 CGAGGATCGATCGGGTCCCTCACTGCATGCTGCTGATCCTACT----C-ACCCTCAATCCAGTTT
*
17931308 GA
516 AA
* * **
17931310 CATTAGGCTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTCAA
1 C-TTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCACTCAA
*** * *
17931375 CCGGCCAG-GGGGCAGGATGCGTTAGCCAGGGATCGGTCGGGTCTCCCTCTGCGTGCTATCGATC
65 CCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGTCGGGTCTCCCTCTACGTGCTATCAATC
* * * *
17931439 CTACTGCCACAACCTTCGATCCGGTCTAAACTTAGACTGGGAGTGAACTCCATATGGTTAGATTG
130 CTACTACCACAACCTTCGATCCGGTCCAAACTTAGACTGGGAGTGAACTCCATATGCTTAGACTG
* *
17931504 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCCCAACCGACCAGAG
195 GGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCCCAACCGACCAGAG
** * * * *
17931569 GGGTAGGATGTGCAAGCCGGGCATCGAT-GGGTCCCCCTCTGCATGCTATCGATCCTGCTACCCT
260 GGACAGGATGCGCAAGCCGGGCATCGATCAGGTCCCCCTCTGCATGCTACCAATCCTGCTACCCT
* ** * * *
17931633 CGATTCGGTCTGATCTTAGACTGGGAATAAAACTCCCGTATGCGTAGACTCGGGAATGAGCATCG
325 CGATCCAATCTGATCTTAAACTGGGAAT-AAACT-CCGAATGCGTAGACT-GGGAATGAAC-TC-
* * *
17931698 GGTAGAACTAAGTCAACCCATG-CACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCAGGATGC
385 CGTAGAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCAGGATGC
* * *
17931762 AAAAGCTGAGGATCGGTCGGGTCCCTCACTGCATGCT-ATCGATCCTACT-ACCCTCA
450 AAAAGCCGAGGATCGATCGGGTCCCTCACTGCATGCTGCT-GATCCTACTCACCCTCA
17931818 GTCCGGCTTC
Statistics
Matches: 425, Mismatches: 76, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
519 7 0.02
521 54 0.13
522 183 0.43
523 77 0.18
524 10 0.02
525 75 0.18
526 19 0.04
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (517 bp):
CTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCACGAAACAAGCGTGCGAGCACTCAAC
CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGTCGGGTCTCCCTCTACGTGCTATCAATCC
TACTACCACAACCTTCGATCCGGTCCAAACTTAGACTGGGAGTGAACTCCATATGCTTAGACTGG
GAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCCCAACCGACCAGAGG
GACAGGATGCGCAAGCCGGGCATCGATCAGGTCCCCCTCTGCATGCTACCAATCCTGCTACCCTC
GATCCAATCTGATCTTAAACTGGGAATAAACTCCGAATGCGTAGACTGGGAATGAACTCCGTAGA
ACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAAGGGCAGGATGCAAAAGC
CGAGGATCGATCGGGTCCCTCACTGCATGCTGCTGATCCTACTCACCCTCAATCCAGTTTAA
Done.