Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 127 of 138
Found at i:17932749 original size:26 final size:26
Alignment explanation
Indices: 17932713--17932763 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17932703 AATCCAATCA
*
17932713 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17932739 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17932764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17933817 original size:26 final size:26
Alignment explanation
Indices: 17933788--17933838 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17933778 CCGGTCCAAT
17933788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17933814 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17933839 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17934708 original size:884 final size:886
Alignment explanation
Indices: 17932984--17934749 Score: 2598
Period size: 884 Copynumber: 2.0 Consensus size: 886
17932974 GCTCAGTCGA
* * * * * * *
17932984 CCAGAGGGGTAAGATGCGTAAGCTGGGGATCGATTGGGTTTCCCTCTGTGTTTTAACGATCTTGG
1 CCAGAGGGGCAAGATGCGTAAGCCGGGGATCAATCGGGTTTCCCTCTGTGTTTGAACGATCCTGC
* * * *
17933049 TGTCACAACCCTAAGTCCGGTCTGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
66 TGCCACAACCCCAAGTCCAGTCTAATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* ** *
17933114 ACGAAACGAGTGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
131 ACAAAACGAGCAGGCGGACGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
17933179 ATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
196 ATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* *
17933244 TTCTAAATTCATACAATGGTCCCTTAAGGCTTCATGTGAACTTTCATGGCAAGACGACTCATTTT
261 TTCTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAACTTTCATGGCAAGACGACTCATTTT
* *
17933309 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCCGAATTTTTAAAAAATTTTTTTGAAGGGAG
326 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGAATTTTTAAAAAATTTTTTAGAAGGGAG
* *
17933374 TTTTGGCCCCAAATATGGTAGACATGATCCTTGCATTTTTGTTGGCATGCAAAAAAAAATTTAGC
391 TTTTAGCCCCAAACATGGTAGACATGATCCTTGCATTTTTGTTGGCATGCAAAAAAAAATTTAGC
** *
17933439 TAAAAACTTGAAGTGTACAAGATTTTGTGACCGTTGGAAAAAAGTGTCCCCATTTCAGACACTTT
456 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
17933504 AATGGCTACTGGCAGCAAACTGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
521 AATGGCTACTGGCAGCAAACTGATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCAAGG
* * * *
17933569 TTTGATGAGGGATAGGTGGCCAATATAATGGCCAAGTGCCAGCACCCACCGCACATCATGTGTGC
586 TTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCAACGCACATCATGTGCGC
* * * * * *
17933634 ACATCCCCCGGCCCCCCCAATCGTCGAAACACTAATGCCGCCAGTCAGGTTCTCCGGTGATGCTC
651 ACATCCCCCCGACCCCCCAATCGCCGAAACACCAATACCGCCAGTCAGGTTCTCCGATGATGCTC
* *
17933699 TGGCGATGGTGCCTCGAGAGAAAAAAAATGTGGCACAAGCACATGCCCGAGCCCAGCATCTGCTA
716 TGGCGATGGTGCCCCGAGAGAAAAAAAATGTGACACAAGCACATGCCCGAGCCCAGCATCTGCTA
* * * *
17933764 CCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
781 CCGCAACCCTCGGTCCAGTCCAATCTTAGACTGCGAATGAACTCCGCATGCTTAGACTGGGAATG
* * *
17933829 AACTCCGTATAACTAAGTCAACCCACGAAATGACCGTAAGC
846 AACTCCGTATAACTAAGTAAACACACGAAACGACCGTAAGC
* *
17933870 CCAGAGGGGCAGGATGCGTAAGCCGGGGATCAATCGGGTTTCCCTCTACGTG-TTGCA-GATCCT
1 CCAGAGGGGCAAGATGCGTAAGCCGGGGATCAATCGGGTTTCCCTCT--GTGTTTGAACGATCCT
** * * *
17933933 GCTGCCACAACCCCCGGTGCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
64 GCTGCCACAACCCCAAGTCCAGTCTAATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
*
17933998 CGACAAAACGAGCAGGCGGGCGGGCACTACG-CTGACCAGAGAGACGGGATGCGCAAGCCGTGGA
129 CGACAAAACGAGCAGGCGGACGGGCACTACGTC-GACCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17934062 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTAT
193 TCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * *
17934127 GGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
258 GGCTTCTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAACTTTCATGGCAAGACGACTCAT
** *
17934192 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCA-AGATTTTT-TAAAATTTTTTAGAA-
323 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGA-ATTTTTAAAAAATTTTTTAGAAG
* *
17934254 GGAGTTTTAGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATT
387 GGAGTTTTAGCCCCAAACATGGTAGACATGATCCTTGCATTTTTGTTGGCATGCAAAAAAAAATT
* *
17934319 TAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACA
452 TAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACA
*
17934384 CTTTAATGGCTGCTGGCAGCAAACCT-ATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCT
517 CTTTAATGGCTACTGGCAGCAAA-CTGATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCT
* *
17934448 CGAGGTTTGATGATGGATAGGGGGCCAATAT-ATGGGCCAAGTACCAGCACCCAACGCACATCAT
581 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAT-GGCCAAGTACCAGCACCCAACGCACATCAT
* * * * * *
17934512 GTGCGCACA-CCCCTCCGACCCCCCAATCGCCGGAACCCCAATACTGTCGGTCAGGTTCTTCGAT
645 GTGCGCACATCCCC-CCGACCCCCCAATCGCCGAAACACCAATACCGCCAGTCAGGTTCTCCGAT
* *
17934576 GATGCTCTGGCGATGGTGCCCCGAGTGAAAAAAAATGTGACACCAA-CACATGCCTGAGCCCAGC
709 GATGCTCTGGCGATGGTGCCCCGAGAGAAAAAAAATGTGACA-CAAGCACATGCCCGAGCCCAGC
* ** * *** *
17934640 ATGTGCTGTCGCAACCGTCGGTCCAGTTTGATCTTAGACTGCGAATGAACTCCGCATGCTTCGAC
773 ATCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGCGAATGAACTCCGCATGCTTAGAC
** *
17934705 TGGGAATGAACTCCGTATGCCTAAGTAAACACATGAAACGACCGT
838 TGGGAATGAACTCCGTATAACTAAGTAAACACACGAAACGACCGT
17934750 GCAAGCGCTC
Statistics
Matches: 784, Mismatches: 88, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
883 6 0.01
884 428 0.55
885 20 0.03
886 324 0.41
887 3 0.00
888 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (886 bp):
CCAGAGGGGCAAGATGCGTAAGCCGGGGATCAATCGGGTTTCCCTCTGTGTTTGAACGATCCTGC
TGCCACAACCCCAAGTCCAGTCTAATCCTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
ACAAAACGAGCAGGCGGACGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
TTCTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAACTTTCATGGCAAGACGACTCATTTT
CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGAATTTTTAAAAAATTTTTTAGAAGGGAG
TTTTAGCCCCAAACATGGTAGACATGATCCTTGCATTTTTGTTGGCATGCAAAAAAAAATTTAGC
TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACTGATAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCAACGCACATCATGTGCGC
ACATCCCCCCGACCCCCCAATCGCCGAAACACCAATACCGCCAGTCAGGTTCTCCGATGATGCTC
TGGCGATGGTGCCCCGAGAGAAAAAAAATGTGACACAAGCACATGCCCGAGCCCAGCATCTGCTA
CCGCAACCCTCGGTCCAGTCCAATCTTAGACTGCGAATGAACTCCGCATGCTTAGACTGGGAATG
AACTCCGTATAACTAAGTAAACACACGAAACGACCGTAAGC
Found at i:17934887 original size:26 final size:26
Alignment explanation
Indices: 17934851--17934901 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17934841 TCGGTCTGAT
*
17934851 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17934877 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17934902 AACTAGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17934984 original size:179 final size:183
Alignment explanation
Indices: 17934668--17935062 Score: 480
Period size: 179 Copynumber: 2.2 Consensus size: 183
17934658 CGGTCCAGTT
* * * **
17934668 TGATCTTAGACTGCGAATGAACTCCGCATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTAA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTAA
* * * ** *
17934733 ACACATGAAACGACCGTGCAAGCGCTCAGTCGGCCAGTGGGGTAGGATGCTTAAGCCGGGGATTG
66 ACACACGAAACGACCGTGCAAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
**
17934798 ATTGGGTC-CCCTTCTAAGTGCTGTCAAT-T-TTGC-T-ACCCTCGAT-TCGGTC
131 ATTGGGTCTCCCTT-TAAGTGCTGTCAATCTCTACCGTAACCCTCGATCT-GGTC
* * *
17934847 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAGGTCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTAA
* * * *
17934912 ACCCACGAAACGAGCGTGCAGGCGCTCAG-CTGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATC
66 ACACACGAAACGACCGTGCAAGCGCTCAGTC-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* ** *
17934976 GGTTGGGTCTCCCTTTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCTGGTC
130 GATTGGGTCTCCCTTTAAGTGCTGTCAAT-CT-CTACCGTAACCCTCGATCTGGTC
17935032 TGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGC
17935063 CTAAGCCAAT
Statistics
Matches: 182, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
178 1 0.01
179 128 0.70
180 5 0.03
181 1 0.01
183 2 0.01
184 1 0.01
185 43 0.24
186 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (183 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTAA
ACACACGAAACGACCGTGCAAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
ATTGGGTCTCCCTTTAAGTGCTGTCAATCTCTACCGTAACCCTCGATCTGGTC
Found at i:17935785 original size:26 final size:26
Alignment explanation
Indices: 17935749--17935801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935739 CCGGTCTGAT
*
17935749 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17935775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17935801 C
1 C
17935802 CTTATGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17937018 original size:159 final size:153
Alignment explanation
Indices: 17936657--17937072 Score: 377
Period size: 153 Copynumber: 2.7 Consensus size: 153
17936647 CTTCGTATAG
* * * * * * *
17936657 TTAGACTGGGAATCAACTCTGTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCTCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCC
* * *
17936722 GACCAGAGGGGCAAGATGCGCAATCTGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCT
66 GACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCT
*
17936787 GATACCCTTGGTCCAGTCTGATC
131 GATACCCTTGGTCCAGACTGATC
* * ** * * *
17936810 TTATACTGGAAATGAACTCCGTATAACTATGTCAACCAATGAAACGAGCGTGCGGTCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * ** *
17936875 GGCCATAGGGGTAGGATGCGCAAGCCGGGGATCGACCGGGTCTCCCTCTGTGTGCTGCCGATCCT
66 GACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCT
**
17936940 -ACTACCACAACCCTTGGTCTGGACTGATC
131 GA-T------ACCCTTGGTCCAGACTGATC
* * * *
17936969 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGC--G--CT-
* ** *
17937034 CA-CCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
61 CAGCCGACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGA
17937073 TAGGGTGGTA
Statistics
Matches: 205, Mismatches: 46, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
152 1 0.00
153 105 0.51
159 64 0.31
161 1 0.00
163 32 0.16
164 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (153 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCC
GACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCT
GATACCCTTGGTCCAGACTGATC
Found at i:17937879 original size:26 final size:26
Alignment explanation
Indices: 17937841--17937893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17937831 CCCGTCCGAT
*
17937841 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17937867 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17937893 C
1 C
17937894 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17938760 original size:26 final size:26
Alignment explanation
Indices: 17938731--17938781 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17938721 CTGATCCGAT
*
17938731 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17938757 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17938782 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17938815 original size:894 final size:887
Alignment explanation
Indices: 17936968--17938656 Score: 2254
Period size: 872 Copynumber: 1.9 Consensus size: 887
17936958 CTGGACTGAT
* * *
17936968 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTAT-ACTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCACC
* *
17937033 ACACCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCAC
65 ACACCGACAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAAGTGGGTTTAGGCAC
***
17937098 ATCTCATATTCTACCATGGCCAATGCCAGTTTATGGCTGTAATTCATATCAATGGTTTTTTAAGC
130 ATCTCATATTCTACCATGGCCAATGCCAGTTTATGGCTGTAATTCATATCAATGGTCCCTTAAGC
* * *
17937163 CTTCATGTGAAGTTTTATAGCCAGCGACTCGTTTTCTATTTTCCATGATTTTTGAAACTTTTACG
195 CTTCATGTGAAGTTTCATAGCAAGCGACTCGTTTTCTATTTTCCATGATTTTTCAAACTTTTACG
* *
17937228 GTTTAGGATTTTTTAAAATTTTTTTTAGAAGGAATTTTGGCCCCAACTTGGTAAGACGTCATCCT
260 GTTCAAGATTTTTTAAAATTTTTTTTAGAAGGAATTTTGGCCCCAACTTGGTAAGACGTCATCCT
* * *
17937293 TGGGTATTTTTGTTGGCAATGCCACAAAAACATTTAGCTAAAAACTCCAAAGTGTACAAGTTTTT
325 T-GGTATTTTTGTTGGCAATGCCACAAAAAAATTCAGCTAAAAACTCCAAAGTGTACAAGTATTT
* *
17937358 TGTGACCAATTGAAAAAGTTACGCCCATTACAGGACTACTTTAATGGCTACTGGCCAGTAAACCT
389 TGTGACCAATTGAAAAAGTTACGCCCATTACAGAACTACTTTAATGGCTACTGGCCAGCAAACCT
*
17937423 GTTAAAATCTCAATGCTCTTTAAGGGGTCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTTAAAATCTCAATGCTCTTTAAGGGGTCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
* * *
17937488 ATATAAGGTCCAAGTACCAGCACCCATCGTACATCATGTGCGCTCACCCCCCCTCCGGCCCCCCA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-CA-----CCTAC-GCCCCCCA
* * *
17937553 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCCCCGGTATGCTCCGGACGATGGTGCCCCGGGT
577 ATCGTCGGAACCCCAATGCCGTC-G-CAGGTT-CCAGGTATGCTCCGGACGATGGTGCACCGGGC
* * ** *
17937618 GAAAAAACATACGGCACCAGCACATACCCGAGCCCAGTGTGTGCTGCCCCAACCCTTGGTCCGGT
639 GAAAAAAAATACGGCACCAGCACATACCCAAGCCCAGCATGTGCTGCCCCAACCCTTGGTCAGGT
* ** * *
17937683 CCAATCTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGTGCGC
704 CCAATCTTAGACTGGGAATGAACTCCGTATAACTAAATCAACCCACGAAACGAGCATGCGGGCGC
* * * *
17937748 TCAACCGACTAGAGGGGCAGGATGCGTAAGCTGGGGATCGATCGGGTCACCCTCTGCATACTGTC
769 TCAACAGACCAGAGGGGCAGGATGCGTAAGCTCGGGATCGATCGGGTCACCCTCTGCATACTGCC
* *
17937813 GATCCTGCTACCCTCGGTCCCGTCCGATCTTAGACTAGGAATGAACTCGGTATG
834 GATCCTCCTACCCTCGATCCCGTCCGATCTTAGACTAGGAATGAACTCGGTATG
* * *
17937867 CTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACC
1 CTTAGACTGGGAATGAACTCCGTATAC-TAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCACC
* ** *
17937932 ACGCCGGTAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCAC
65 ACACCGACAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAAGTGGGTTTAGGCAC
*
17937997 ATCTTCATATTTCTACCAT-GCCAATGCCATTTTTATGGCTTGTAAATTCATA-CAATGGTCCCT
130 ATC-TCATA-TTCTACCATGGCCAATGCCA-GTTTATGGC-TGT-AATTCATATCAATGGTCCCT
* *
17938060 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAATAC
190 TAAGCCTTCATGTGAAGTTTCATAGCAAG-CGACTCGTTTTCTATTTTCCATGATTTTTCAA-AC
* * *
17938124 TTTTTACGGTTCAAGATTTTTTAAAA-TTTTTTTAGCAGGAGTTTTGGCCCCAAACTTTGT-AGA
253 -TTTTACGGTTCAAGATTTTTTAAAATTTTTTTTAGAAGGAATTTTGGCCCC-AACTTGGTAAGA
* *
17938187 CGTGATCCTT-GTATTTTTTTTGGC-ATG-CACAAAAAAATTCAGCTAAAAACT-CAAAGTGTAC
316 CGTCATCCTTGGTATTTTTGTTGGCAATGCCACAAAAAAATTCAGCTAAAAACTCCAAAGTGTAC
* * * *
17938248 AAG-ATTTTGTGATCATTTGAAAAAAGTGT-C-CCTATTTC-GAAC-ACTTTAATGGCTACTGG-
381 AAGTATTTTGTGACCAATTG-AAAAAGT-TACGCCCATTACAGAACTACTTTAATGGCTACTGGC
17938307 CAGCAAACCTG-TAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCAAGGTTTGATGAGG
444 CAGCAAACCTGTTAAAATCTC-AATGCTCTTTAA-GGGGTCGTGAGTTCTCAAGGTTTGATGAGG
* *
17938370 GATAGGGGGCCAATATAAGGGCCACGTACCAGCACGCATCGCACATCATGTGCG-CA-C-AC-CC
507 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCCACCTACGCC
17938431 CCCCAATCAG-CGGAACCCCAATGCCG-C-C-GG-T-CAGGT-T-CTCCGG-CGATGGTGCACCG
572 CCCCAATC-GTCGGAACCCCAATGCCGTCGCAGGTTCCAGGTATGCTCCGGACGATGGTGCACCG
* ** *
17938487 GGCGAAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTTGTTCA
636 GGCGAAAAAAAATACGGCACCAGCACATACCCAAGCCCAGCATGTGCTGCCCCAACCCTTGGTCA
** * * *
17938552 GGTCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAATCAACCCATGAAACGAGCGTTCGGG
701 GGTCCAATCTTAGACTGGGAATGAACTCCGTATAACTAAATCAACCCACGAAACGAGCATGCGGG
*
17938617 CGCTCAGTCAG-CCAGAGGGGCAGGATGCGTAAGC-CGGGAT
766 CGCTCA-ACAGACCAGAGGGGCAGGATGCGTAAGCTCGGGAT
17938657 TGGTCAGGTT
Statistics
Matches: 706, Mismatches: 68, Indels: 60
0.85 0.08 0.07
Matches are distributed among these distances:
871 5 0.01
872 150 0.21
873 8 0.01
874 1 0.00
875 4 0.01
877 1 0.00
878 2 0.00
879 1 0.00
882 1 0.00
883 26 0.04
884 1 0.00
885 1 0.00
886 1 0.00
892 2 0.00
893 9 0.01
894 95 0.13
895 22 0.03
896 3 0.00
897 19 0.03
898 22 0.03
899 143 0.20
900 18 0.03
901 30 0.04
902 43 0.06
903 68 0.10
904 30 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATACTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCACCA
CACCGACAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAAGTGGGTTTAGGCACA
TCTCATATTCTACCATGGCCAATGCCAGTTTATGGCTGTAATTCATATCAATGGTCCCTTAAGCC
TTCATGTGAAGTTTCATAGCAAGCGACTCGTTTTCTATTTTCCATGATTTTTCAAACTTTTACGG
TTCAAGATTTTTTAAAATTTTTTTTAGAAGGAATTTTGGCCCCAACTTGGTAAGACGTCATCCTT
GGTATTTTTGTTGGCAATGCCACAAAAAAATTCAGCTAAAAACTCCAAAGTGTACAAGTATTTTG
TGACCAATTGAAAAAGTTACGCCCATTACAGAACTACTTTAATGGCTACTGGCCAGCAAACCTGT
TAAAATCTCAATGCTCTTTAAGGGGTCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCCACCTACGCCCCCCAATCGTCGGA
ACCCCAATGCCGTCGCAGGTTCCAGGTATGCTCCGGACGATGGTGCACCGGGCGAAAAAAAATAC
GGCACCAGCACATACCCAAGCCCAGCATGTGCTGCCCCAACCCTTGGTCAGGTCCAATCTTAGAC
TGGGAATGAACTCCGTATAACTAAATCAACCCACGAAACGAGCATGCGGGCGCTCAACAGACCAG
AGGGGCAGGATGCGTAAGCTCGGGATCGATCGGGTCACCCTCTGCATACTGCCGATCCTCCTACC
CTCGATCCCGTCCGATCTTAGACTAGGAATGAACTCGGTATG
Found at i:17940011 original size:159 final size:154
Alignment explanation
Indices: 17939655--17940018 Score: 397
Period size: 154 Copynumber: 2.3 Consensus size: 154
17939645 ACTCCGTATG
* * * * * *
17939655 CTTAGACTGAGAATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAGC
* * ** * *
17939720 CGACCAGAGGGGCAGGATGCGCAAGCTAGGGATCGATCGGGTCTGCCCACTGTGTGCTGTCGATC
66 CGACCAGAGGGACAGGATGCGCAAGCCAGGGATCGATCGCATCTGCCCACTGTGTGCTGCCAATC
* ** *
17939785 CTGCTACCCTTGGTCCAGTCTGAT
131 CTGCAACCCTCAGACCAGTCTGAT
** * *
17939809 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAGC
* * * * *
17939874 CGGCCAGAGGGATAGGATGTGCAAGCCAGGGATCGGTCGCATCT-CCCTCTGTGTGCTGCCAATC
66 CGACCAGAGGGACAGGATGCGCAAGCCAGGGATCGATCGCATCTGCCCACTGTGTGCTGCCAAT-
* *
17939938 CTACTGTCGCAACCCTCAGACCGGTTTGAT
130 C--C--T-GCAACCCTCAGACCAGTCTGAT
* * *
17939968 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
17940019 GGCGGGCGGG
Statistics
Matches: 171, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
153 16 0.09
154 92 0.54
156 1 0.01
158 1 0.01
159 61 0.36
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAGC
CGACCAGAGGGACAGGATGCGCAAGCCAGGGATCGATCGCATCTGCCCACTGTGTGCTGCCAATC
CTGCAACCCTCAGACCAGTCTGAT
Found at i:17940691 original size:26 final size:26
Alignment explanation
Indices: 17940662--17940711 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17940652 CGGTCTGATC
17940662 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
* *
17940688 TTAGATTGGGAATGAACTTCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
17940712 AACTAAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:17941285 original size:26 final size:26
Alignment explanation
Indices: 17941233--17941285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17941223 CCAGTCTGAT
* **
17941233 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCACATG
17941259 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
17941285 C
1 C
17941286 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17941449 original size:26 final size:26
Alignment explanation
Indices: 17941413--17941515 Score: 206
Period size: 26 Copynumber: 4.0 Consensus size: 26
17941403 CTGGTCTGAT
17941413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17941439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17941465 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17941491 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17941516 AACTAAGTCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17942369 original size:26 final size:26
Alignment explanation
Indices: 17942340--17942392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942330 CCGGTCCCAT
* *
17942340 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
17942366 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17942392 C
1 C
17942393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:17942548 original size:26 final size:26
Alignment explanation
Indices: 17942519--17942569 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942509 CTGGTCCTAT
* *
17942519 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17942545 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17942570 AACTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17942621 original size:179 final size:177
Alignment explanation
Indices: 17942321--17942819 Score: 691
Period size: 179 Copynumber: 2.8 Consensus size: 177
17942311 TGCTGTCGCA
* * * * *
17942321 ACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAGCTCCGTATGCTTAGATTGCGAATGAACTC
1 ACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
** *
17942386 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCTA-CCGACCAGAGGGGTAGGATG
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCA-TC-AGCCG-CCAGAGGGGTAGGATG
* *
17942450 CACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCT
128 CGCAAGCCGGGGATCGATCGGGTCCCCCTATACGTGCTGTCGATCCTGCT
* *
17942500 ACCCTCGGTCTGGTCCTATCTTAGTCTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* *
17942565 CGTATAACTAAGTTAACCCATGAAACGAGTGTGCGGGCATACAGCCAGCCAGAGGGGCT-GGATG
66 CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCAT-CAGCC-GCCAGAGGGG-TAGGATG
* * *
17942629 TGCAAGCCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGTCGATCCTGCT
128 CGCAAGCCGGGGATCGATCGGGTCCCCCTATACGTGCTGTCGATCCTGCT
17942679 ACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCGGTCTGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
17942743 CCGTATAACTAAGTCAACCCATGAAACAAGCGTGCGAATGC-TCAGCCGGCCAGAGGGGCAGGAT
65 CCGTATAACTAAGTCAACCCATGAAACGAGCGTGCG--GGCATCAGCC-GCCAGAGGGGTAGGAT
*
17942807 ACGCAAGCCGGGG
127 GCGCAAGCCGGGG
17942820 GGATCGGTTA
Statistics
Matches: 285, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
178 4 0.01
179 276 0.97
180 3 0.01
181 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (177 bp):
ACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCATGAAACGAGCGTGCGGGCATCAGCCGCCAGAGGGGTAGGATGCGC
AAGCCGGGGATCGATCGGGTCCCCCTATACGTGCTGTCGATCCTGCT
Found at i:17942734 original size:26 final size:26
Alignment explanation
Indices: 17942698--17942748 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942688 CTGGTCTGAT
17942698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17942724 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
17942749 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17942987 original size:26 final size:26
Alignment explanation
Indices: 17942937--17942987 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17942927 CCGATCCGAT
*
17942937 CTTAGACTAGGAATGAACTATGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
17942963 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTACGTAT
17942988 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:17943865 original size:26 final size:26
Alignment explanation
Indices: 17943836--17943888 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17943826 CCGGTTCAAT
*
17943836 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACACCGTATG
* *
17943862 CTTAGACTGGGTATGAACACCGTATG
1 CTTAGACAGGGAATGAACACCGTATG
17943888 C
1 C
17943889 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACACCGTATG
Found at i:17944139 original size:179 final size:179
Alignment explanation
Indices: 17943834--17944177 Score: 494
Period size: 179 Copynumber: 1.9 Consensus size: 179
17943824 GTCCGGTTCA
* * * **
17943834 ATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGTATGAACACCGTATGCCTAAGTCAAC
1 ATCTTAGACAGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCGTATAACTAAGTCAAC
* * * * *
17943899 CCATGAAACGAGCATACGGGCGCTCAGCCGGCTAGAGGGGCAGGATGCACAAGACGGGGATCGAC
66 CCATGAAACAAGCATACGGGCACTCAGCCGGCCAGAGGGACAGGATCCACAAGACGGGGATCGAC
17943964 -CGAGTCTCCCTCTCCGTGCAGTCGATCCTGCTACCCTCAGTCTGCTCTG
131 TCG-GTCTCCCTCTCCGTGCAGTCGATCCTGCTACCCTCAGTCTGCTCTG
** *
17944013 ATCTTAGATTGGGAATGAACACCATATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAAC
1 ATCTTAGACAGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCGTATAACTAAGTCAAC
* *
17944078 CCATGAAACAAGCATGCGGGCACTCAGCCGGCCAGAGGGACAGGATCCGCAAG-CTGGGGATCGA
66 CCATGAAACAAGCATACGGGCACTCAGCCGGCCAGAGGGACAGGATCCACAAGAC-GGGGATCGA
* * *
17944142 CTTGGTCTCCCTCTGCGTGCTGTCGATCCTGCTACC
130 CTCGGTCTCCCTCTCCGTGCAGTCGATCCTGCTACC
17944178 GTAACCCTCA
Statistics
Matches: 145, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
178 1 0.01
179 143 0.99
180 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (179 bp):
ATCTTAGACAGGGAATGAACACCATATGCTTAGACTGGGAATGAACACCGTATAACTAAGTCAAC
CCATGAAACAAGCATACGGGCACTCAGCCGGCCAGAGGGACAGGATCCACAAGACGGGGATCGAC
TCGGTCTCCCTCTCCGTGCAGTCGATCCTGCTACCCTCAGTCTGCTCTG
Found at i:17945476 original size:26 final size:26
Alignment explanation
Indices: 17945446--17945498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17945436 GTTGACTTAG
17945446 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
17945472 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17945498 G
1 G
17945499 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17945983 original size:26 final size:26
Alignment explanation
Indices: 17945947--17945999 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17945937 GTTGGCTTAG
17945947 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17945973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17945999 G
1 G
17946000 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17946178 original size:501 final size:502
Alignment explanation
Indices: 17945088--17946195 Score: 1230
Period size: 501 Copynumber: 2.2 Consensus size: 502
17945078 CAAGTCTGGT
*
17945088 CGATTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTA
1 CGATTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
17945153 AGCCCCAGCCGAAATGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGAGCTGAT
66 AGCCCCAGACGGAATGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCTGAT
* * * * *
17945218 CCCTGGCTTACGCAGTATGCCTCTTTGGCTGGCTAAGCGCCTGCAGACTCATTTCCTGGGTTGAC
131 CCCCGGCTTACGCAGTATACCTCTTCGGCCGGCTAAGCGCCCGCAGACTCATTTCCTGGGTTGAC
* * * * *
17945283 TTATGCATATGGAGTTCATTCACAGTCTAAGATTGAACCAGATCGAGGATTGCGACAGTAGGATC
196 TTATGCATACGGAGTTCATTCACAGTCTAAGATAGAACCAGACCAAGGATTACGACAGTAGGATC
* * * * ** * * * **
17945348 GACAGCACATAGGGGGGGACTGGGTCGATCCCTGTTTTGCACATTCTACCTCTTCGGTCGGTTGA
261 GACAGCACACAGGGGGCGACAGGCTCGATCCCTGGCTTGCACATTCTACCGCTCCGATCGACTGA
*
17945413 CCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAC
326 CCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAC
**
17945478 AGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAACAGGATCGACAGCATGC
391 AGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAACAGGATCGACAGCACAC
* * ** * * * * **
17945543 AGGGGGGATCAGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCTTCC
456 AAGGGGGACCAGACCGATCCCCAACTTGCGCATTCTACCTCTCCGCC
* * *
17945590 CGACTGAGCG-CCGACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCG
1 CGATTGAGCGCCCG-CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* *** *
17945654 AAGCCCCA-ACTAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGA-CTGGGCT
65 AAGCCCCAGAC-GGAATGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC-GAGCT
* * * * * **
17945717 GATCCCCGGCTTGCGCATTATACCTCTTCGGCCGGCTCAGCGCCCGTACG-CTCGTTTTGTGGGT
128 GATCCCCGGCTTACGCAGTATACCTCTTCGGCCGGCTAAGCGCCCGCA-GACTCATTTCCTGGGT
* * **
17945781 TGACTTATGCATACGG-GTTCATTC-CTAGTCTAAGATCAG-ATCAGACCAAGGGTTACGGTAGT
192 TGACTTATGCATACGGAGTTCATTCAC-AGTCTAAGAT-AGAACCAGACCAAGGATTACGACAGT
* ** * **
17945843 AGGATCGACAGCACGCAGGGGGCGATCAGGCT-GAT-CCTCGGCTTGCGTATTTTGTCGCTCCGA
255 AGGATCGACAGCACACAGGGGGCGA-CAGGCTCGATCCCT-GGCTTGCACATTCTACCGCTCCGA
** * * * * *
17945906 TCGACTGAGTGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
318 TCGACTGACCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTC
* * * * ** *
17945970 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGGTAGCAGGATCG
382 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAACAGGATCG
*
17946035 ACAGCACACAAGGGGGACC-GAACCGATCCCCAACTTGCGCATTCTACCTCTCCGGC
447 ACAGCACACAAGGGGGACCAG-ACCGATCCCCAACTTGCGCATTCTACCTCTCCGCC
* * * * * *
17946091 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGATTGGCTTAGGTATACGGAGTTTATTCCATGTCTA
1 CGATTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * *
17946156 AACCCCAGTCGGATTGAGGGTTGTGGTAGCAGGACTGACA
66 AGCCCCAGACGGAATGAGGGTTGTGGCAGCGGGACCGACA
17946196 ACGAGATCGG
Statistics
Matches: 497, Mismatches: 97, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
500 8 0.02
501 308 0.62
502 180 0.36
503 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (502 bp):
CGATTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGACGGAATGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCTGAT
CCCCGGCTTACGCAGTATACCTCTTCGGCCGGCTAAGCGCCCGCAGACTCATTTCCTGGGTTGAC
TTATGCATACGGAGTTCATTCACAGTCTAAGATAGAACCAGACCAAGGATTACGACAGTAGGATC
GACAGCACACAGGGGGCGACAGGCTCGATCCCTGGCTTGCACATTCTACCGCTCCGATCGACTGA
CCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAACAGGATCGACAGCACAC
AAGGGGGACCAGACCGATCCCCAACTTGCGCATTCTACCTCTCCGCC
Found at i:17946345 original size:26 final size:26
Alignment explanation
Indices: 17946315--17946367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17946305 GTTGACTTAG
17946315 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17946341 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17946367 G
1 G
17946368 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17948118 original size:158 final size:158
Alignment explanation
Indices: 17947955--17948477 Score: 523
Period size: 158 Copynumber: 3.3 Consensus size: 158
17947945 ACCCACACGT
* * *
17947955 TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
1 TCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * *
17948020 GTTGTGGCAGCGGGATCAACAGCACGCAAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGC
66 GTTGTGGCAGCGGGATCGACAGCACGCAAGGGGGAACGGGCCGATCCCCGGCTTACGCATTATGC
* *
17948085 CTCTCCGGCCGGCTGAGTGCCTGCACGC
131 CTCTCCGGCCGGCTGAGCGCCTGCATGC
* * * * * *
17948113 CCGTTTCGTGGGTTGAATTAGGCATAGTGATTTCATTCCATGT-TAAGCCCTAGCCAGACCGAGG
1 TCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* ** ** * * * * * *
17948177 GTTGTGGCAGTGGGGCCGGTAGCACGTAGAGGAGGAACAGGCCGATCCCCGACATGCGCATTATG
66 GTTGTGGCAGCGGGATCGACAGCACGCA-AGGGGGAACGGGCCGATCCCCGGCTTACGCATTATG
* * *
17948242 CATCTTCGGCCGGCTCAGCGCCCT-CATGC
130 CCTCTCCGGCCGGCTGAGCG-CCTGCATGC
* * ** * ** *
17948271 TCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTTGAAGTCTAAG-ATCAGGTCAGACCGAG
1 TCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-GCCAGACCGAG
* * * * * *
17948335 GGTTGTGGCAGCAGGATCGACAGCATGC-AGGAGGGATCGAGCCGATCCCCGGCTTACGTATTTT
65 GGTTGTGGCAGCGGGATCGACAGCACGCAAGG-GGGAACGGGCCGATCCCCGGCTTACGCATTAT
* * *
17948399 GCCTCTCCGACCGACTGAGCGCCCGCATGC
129 GCCTCTCCGGCCGGCTGAGCGCCTGCATGC
** * * *
17948429 TCGTTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17948478 ATACGGAGTT
Statistics
Matches: 283, Mismatches: 75, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
157 44 0.16
158 202 0.71
159 37 0.13
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
TCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGTGGCAGCGGGATCGACAGCACGCAAGGGGGAACGGGCCGATCCCCGGCTTACGCATTATGC
CTCTCCGGCCGGCTGAGCGCCTGCATGC
Found at i:17948500 original size:26 final size:26
Alignment explanation
Indices: 17948450--17948502 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17948440 GTTGGCTTAG
*
17948450 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17948476 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17948502 G
1 G
17948503 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17950064 original size:26 final size:26
Alignment explanation
Indices: 17950028--17950106 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17950018 GTTGACTTTG
*
17950028 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17950054 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17950080 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17950106 G
1 G
17950107 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17950590 original size:26 final size:26
Alignment explanation
Indices: 17950556--17950608 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17950546 GTTGGCTTAG
17950556 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
17950582 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17950608 G
1 G
17950609 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17951620 original size:159 final size:159
Alignment explanation
Indices: 17951423--17951811 Score: 419
Period size: 159 Copynumber: 2.4 Consensus size: 159
17951413 CTCTCCAGCA
* * * *
17951423 GGCTGAGCACCCGCACGCTCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * ** *
17951488 GCCCCAG-TC-GAGTCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGTGGGTGACCAGGTCAA
66 GCACCAGATCGGA-CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACCAGGTCAA
*
17951551 TCCCCGACTTACGCATTCTG-CATCTTCGATC
129 TCCCCGACTTACGCATTCTGAC-TCTCCGATC
* * * *
17951582 GGCTCAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAT-TCTA
1 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * * * ***
17951646 AG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTGGGT
65 AGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGTCAAT
*
17951710 CCCCGACTTGCGCATTCTGACTCTCCGATC
130 CCCCGACTTACGCATTCTGACTCTCCGATC
* * ** *
17951740 GGCTGAGCGCTCGCATGTACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGT
1 GGCTCAGCGC-C-C--GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
17951805 CTAAGCA
62 CTAAGCA
17951812 TACCGAGTTC
Statistics
Matches: 188, Mismatches: 32, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
158 47 0.25
159 87 0.46
160 7 0.04
161 4 0.02
162 42 0.22
163 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGTCAATC
CCCGACTTACGCATTCTGACTCTCCGATC
Found at i:17952493 original size:159 final size:158
Alignment explanation
Indices: 17952330--17952851 Score: 437
Period size: 159 Copynumber: 3.3 Consensus size: 158
17952320 CGCATGCCCG
* *
17952330 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGCACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGCACCGAGGGTT
* * * * ** *
17952395 ATGGTAGCGGGACC-AGCAACACGTAGAGGGGGACCGGGTCGATCTTCGGCTTGCGCATTATGCC
66 GTGGTAGCGGGACCGA-CAACACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACC
* **
17952459 TCT-TCAGTCGACTTAGCG-CCCGTACGATCA
129 TCTCT-AGTCGACTGAG-GACCCACACGATCA
** * * * ** * * * *
17952489 TTTCGCAGGTTGACTTATGCATACGGAGTTCATT-CTTAGTCTAAG-ATCGGACTACACCGGGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGTC-GCACCGAGGG
** * * * * * *
17952552 TTGCAGAAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACC
64 TTGTGGTAGCGGGACCGACAACACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACC
* * * *
17952617 TCTCTGGTCGGCTGAGGACCCACACGCTCG
129 TCTCTAGTCGACTGAGGACCCACACGATCA
*
17952647 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGCACCGAGGGTT
* * * * * * *
17952712 GTGGTAGCGGGACTGACAGCATGCAGTGGGGGACCATGCCGATCCCCGACTTCCGCATTATCCCT
66 GTGGTAGCGGGACCGACAACACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACCT
* * * * *
17952777 CTCTTGTCGGCTCAGCG-CCCACACGCTCG
130 CTCTAGTCGACTGAG-GACCCACACGATCA
* * * * *
17952806 TTTCATGGGTTGACTTAAGCATACGAAGTTCA-TCCCTAGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
17952852 ATACGGAGTT
Statistics
Matches: 286, Mismatches: 67, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 123 0.43
159 160 0.56
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGCACCGAGGGTT
GTGGTAGCGGGACCGACAACACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACCTC
TCTAGTCGACTGAGGACCCACACGATCA
Found at i:17952658 original size:158 final size:157
Alignment explanation
Indices: 17952226--17952851 Score: 406
Period size: 159 Copynumber: 4.0 Consensus size: 157
17952216 GATCGGACTG
* * * *
17952226 GACCGAGGGTTGC-GACCGCAGGA-TCGACAGCACGCAG-GAGGGACCGGGCTGATCCCCGACTT
1 GACCGAGGGTTGCAGA-AGCAGGACT-GACAGCACGCAGTGGGGGACCAGGCCGATCCCCGACTT
** * * * * * * * * * * * *
17952288 ATGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
64 CCGCATTATACCTCTCTGGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATA
* * *
17952353 GGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CGGAGTTCATTCTA-GTCTAAGCCCCACTC
* *** * * * * * * * * ** *
17952383 GCACTGAGGGTTATGGTAGCGGGAC-CAGCAACACGTAGAGGGGGACCGGGTCGATCTTCGGCTT
1 G-ACCGAGGGTTGCAGAAGCAGGACTGA-CAGCACGCAGTGGGGGACCAGGCCGATCCCCGACTT
* * * * * ** * * *** *
17952447 GCGCATTATGCCTCT-TCAGTCGACTTAGCGCCCGTACGATCATTTCGCAGGTTGACTTATGCAT
64 CCGCATTATACCTCTCT-GGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCAT
* **
17952511 ACGGAGTTCATTCTTAGTCTAAGATCGGACTAC
128 ACGGAGTTCATTC-TAGTCTAAG-CCCCACT-C
* * * *
17952544 -ACCGGGGGTTGCAGAAGCAGGA-TCGACAGCACGCAG-GGGGGATCAGGCCGATCCCCGGCTTG
1 GACCGAGGGTTGCAGAAGCAGGACT-GACAGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTC
* * * * *
17952606 CGCATTCTACCTCTCTGGTCGGCTGAG-GACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATA
65 CGCATTATACCTCTCTGGTCGGCTCAGCG-CCCACACGCTCGTTTCATGGGTTGACTTAAGCATA
* *
17952670 CGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CGGAGTTCATTCTA-GTCTAAGCCCCACTC
** * * * *
17952700 GGACCGAGGGTTGTGGTAGCGGGACTGACAGCATGCAGTGGGGGACCATGCCGATCCCCGACTTC
1 -GACCGAGGGTTGCAGAAGCAGGACTGACAGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTC
* *
17952765 CGCATTATCCCTCTCTTGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATAC
65 CGCATTATACCTCTCTGGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATAC
* *
17952830 GAAGTTCATCCCTAGTCTAAGC
130 GGAGTTCAT-TCTAGTCTAAGC
17952852 ATACGGAGTT
Statistics
Matches: 357, Mismatches: 92, Indels: 38
0.73 0.19 0.08
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 137 0.38
159 203 0.57
160 8 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GACCGAGGGTTGCAGAAGCAGGACTGACAGCACGCAGTGGGGGACCAGGCCGATCCCCGACTTCC
GCATTATACCTCTCTGGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATACG
GAGTTCATTCTAGTCTAAGCCCCACTC
Found at i:17952796 original size:317 final size:317
Alignment explanation
Indices: 17952187--17952850 Score: 805
Period size: 317 Copynumber: 2.1 Consensus size: 317
17952177 ATCCCCAGTC
* * * ** *
17952187 TAAGCATACAAAGTTCATTCCCAGTCTCAGATCGGACTGGACCGAGGGTTGCGACCGCAGGATCG
1 TAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTACACCGAGGGTTGCGACAGCAGGATCG
* * * *
17952252 ACAGCACGCAGGAGGGACCGGGCTGATCCCCGACTTATGCATTCTGCCTCTCCGGCCGGCTGAGT
66 ACAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGT
* * *
17952317 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
131 GCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * ** *
17952382 CGCACTGAGGGTTATGGTAGCGGGACCAGCAACACGTAGAGGGGGACCGGGTCGATCTTCGGCTT
196 CGCACCGAGGGTTATGGTAGCGGGACCAGCAACACGCAGAGGGGGACCAGGCCGATCCCCGACTT
* * * ** *
17952447 GCGCATTATGCCTCTTCAGTCGACTTAGCGCCCGTACGATCATTTCGCAGGTTGACT
261 CCGCATTATCCCTCTTCAGTCGACTCAGCGCCCACACGATCATTTCACAGGTTGACT
* * * *
17952504 TATGCATACGGAGTTCATTCTTAGTCTAAGATCGGACTACACCGGGGGTTGCAGA-AGCAGGATC
1 TAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTACACCGAGGGTTGC-GACAGCAGGATC
* * * * * *
17952568 GACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAG
65 GACAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAG
*
17952633 -GACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
130 TG-CCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * *
17952697 GTCGGACCGAGGGTTGTGGTAGCGGGA-CTGACAGCATGCAGTGGGGGACCATGCCGATCCCCGA
194 GTCGCACCGAGGGTTATGGTAGCGGGACCAG-CAACACGCAGAGGGGGACCAGGCCGATCCCCGA
* * * * **
17952761 CTTCCGCATTATCCCTC-TCTTGTCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACT
258 CTTCCGCATTATCCCTCTTC-AGTCGACTCAGCGCCCACACGATCATTTCACAGGTTGACT
*
17952821 TAAGCATACGAAGTTCATCCCTAGTCTAAG
1 TAAGCATACGAAGTTCATTCCTAGTCTAAG
17952851 CATACGGAGT
Statistics
Matches: 289, Mismatches: 54, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
316 5 0.02
317 282 0.98
318 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
TAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTACACCGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAGGAGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGT
GCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
CGCACCGAGGGTTATGGTAGCGGGACCAGCAACACGCAGAGGGGGACCAGGCCGATCCCCGACTT
CCGCATTATCCCTCTTCAGTCGACTCAGCGCCCACACGATCATTTCACAGGTTGACT
Found at i:17952851 original size:26 final size:26
Alignment explanation
Indices: 17952821--17952876 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17952811 TGGGTTGACT
17952821 TAAGCATACGAAGTTCA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
*
17952847 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
17952873 TAAG
1 TAAG
17952877 ATTGGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:17954159 original size:26 final size:26
Alignment explanation
Indices: 17954123--17954175 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17954113 GTTGACTTAG
*
17954123 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
17954149 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
17954175 G
1 G
17954176 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:17954480 original size:26 final size:26
Alignment explanation
Indices: 17954450--17954502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17954440 GTTGGCTTAG
17954450 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
17954476 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17954502 G
1 G
17954503 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17954615 original size:185 final size:191
Alignment explanation
Indices: 17954424--17955030 Score: 560
Period size: 197 Copynumber: 3.3 Consensus size: 191
17954414 TTAGCGCCCA
*
17954424 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAGGGAGTTC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * *
17954489 ATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCAGG-ATC-GG-TAG-CATG-CG-
66 ATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGCAGGAAGCAGGATAGACA-GACGC
*
17954548 A-GGAGGGATCGGGCCGATCC-CAGGCTTGCACATTCTATCTCTCCGGTCGGCT-GAGCACCCG
130 AGGGAGGGATCGGGCCGATCCTC-GGCTTGCACATTCTACCTCTCCGGTCGG-TGGAGCACCCG
* * *
17954609 CACGCTCGTTTCATGGGTAGGTTTAGGCATACAGAGTTCATTCCATGTCTATGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* *
17954674 ATTCCCAGTCTAAGATTGGA-TCGGATCGAGGGTTGCTGCAGCAGGACCAACAGCAGGATCGACA
66 ATTCCCAGTCTAAGATTGGACT-GGATCGAGGGTTGCGGCAGCAGG----A-AGCAGGATAGACA
* * * *
17954738 GCACGCAGGGAGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGTGGAGCAC
125 G-ACGCAGGGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGGTGGAGCAC
17954803 CCG
189 CCG
* * * * * **
17954806 CACGTTCGTTTGATGGGTTGACTTAGGCATAC-GAAGTTCA-TCCCTAGTCTAAGTATATAGAGT
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCAT-GTCTAAGCATACGGAGT
* ** *
17954869 TCATTCTCAGTCTAAGATCAGACTGGATTGAGGGTTGC-G-A-C----AGC---AT--------G
64 TCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGCAGGAAGCAGGATAGACAGACG
* * * * *
17954916 CA-GG-GGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGACT-GAGCACCCG
129 CAGGGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCG-GTGGAGCACCCG
* ** *
17954977 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
17955031 CCTAGTCGGA
Statistics
Matches: 359, Mismatches: 41, Indels: 58
0.78 0.09 0.13
Matches are distributed among these distances:
171 90 0.25
172 7 0.02
173 3 0.01
182 2 0.01
184 1 0.00
185 104 0.29
191 2 0.01
192 2 0.01
193 3 0.01
194 3 0.01
195 3 0.01
196 8 0.02
197 129 0.36
198 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (191 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGCAGGAAGCAGGATAGACAGACGCA
GGGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGGTGGAGCACCCG
Found at i:17955564 original size:26 final size:26
Alignment explanation
Indices: 17955534--17955585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17955524 GTTGGCTTAG
17955534 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17955560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17955586 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17955672 original size:11 final size:11
Alignment explanation
Indices: 17955656--17955688 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
17955646 CCTGAGGCAC
*
17955656 CATCGTAGGAG
1 CATCGTCGGAG
17955667 CATCGTCGGAG
1 CATCGTCGGAG
17955678 CATCGTCGGAG
1 CATCGTCGGAG
17955689 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:17956787 original size:26 final size:26
Alignment explanation
Indices: 17956738--17956790 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17956728 GTTGGCTTAG
* *
17956738 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
17956764 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
17956790 G
1 G
17956791 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:17957597 original size:159 final size:157
Alignment explanation
Indices: 17957130--17957598 Score: 449
Period size: 159 Copynumber: 2.9 Consensus size: 157
17957120 TATAATGAAG
* * * * * *
17957130 GGGGGACCAGGCCGATCCCCAACTTACACATTCTGCTTCTCCAACCGGTTGAGCACCCGCACGAC
1 GGGGGACCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGTT-AGCACCCGAACG-C
* * * ** * * *
17957195 T-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
64 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGACTGAGG
* *** *
17957259 GTTGTGGCAGCGGGACTGGCAGCACGCAGA
128 GTTGTGGCAGCAGGACCAACAGCACACAGA
* * * * * * * *
17957289 GGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGGTCGACTTAGCACCCGAACGCT
1 GGGGGACCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCG-GTTAGCACCCGAACGCT
* * * *
17957354 CGTTTTGTGGGTTGACTTAGGCATACTGAGTTCATTCCCA-GTCTAAGATC-GAATCGGACTGAG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAG-A-CCGACTGAG
* * *
17957417 GGTTGTGGCAACAGGATCAACAGCACATAGA
127 GGTTGTGGCAGCAGGACCAACAGCACACAGA
* * * *
17957448 GGGGGACCAGGCCAATCCCCAACTTGTGCATTCTGCCTCTCCGATCGGTTAAGCACCTGTACGCT
1 GGGGGACCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGTT-AGCACCCGAACGCT
*
17957513 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGATCAGACCGAACTGAGGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCG-ACTGAGGG
** * *
17957578 TTACGACAGTAGGACCAACAG
129 TTGTGGCAGCAGGACCAACAG
17957599 TAGGATCAGT
Statistics
Matches: 245, Mismatches: 56, Indels: 18
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 9 0.04
159 229 0.93
160 6 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (157 bp):
GGGGGACCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGTTAGCACCCGAACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACTGAGGGTT
GTGGCAGCAGGACCAACAGCACACAGA
Found at i:17957747 original size:26 final size:26
Alignment explanation
Indices: 17957717--17957768 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17957707 TTGACTTAGA
*
17957717 CATATGGAGTTCATCCCCAGTCTAAG
1 CATATGGAGTCCATCCCCAGTCTAAG
*
17957743 CATATGGAGTCCATTCCCAGTCTAAG
1 CATATGGAGTCCATCCCCAGTCTAAG
17957769 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATATGGAGTCCATCCCCAGTCTAAG
Found at i:17958199 original size:26 final size:26
Alignment explanation
Indices: 17958170--17958222 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17958160 GTTGGCTTAG
* *
17958170 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
17958196 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17958222 G
1 G
17958223 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17958936 original size:160 final size:156
Alignment explanation
Indices: 17958584--17958952 Score: 359
Period size: 160 Copynumber: 2.3 Consensus size: 156
17958574 TAAGCATAAA
* *
17958584 GAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGTAGCAGGATTGTCAGCACGCAG
1 GAGTTCATTCCCAGTCTAAGATCAAAC-GGACCGAGGGTTGCGTAGCAGGATCGGCAGCACGCAG
* * * * * * * * *
17958649 GGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTCTGGCCGGTTGAGTGCCCATACGCA
65 GGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCATACGCA
* * ** *
17958714 TGTTTCGTGGGTTGGCTTAGGCATAGG
130 TATTTCATGGGTTGAATTAGGCATACG
** ** * *
17958741 GAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTTGC-GAGATCGGCAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAAACGGACCGAGGGTTG-CGTAGCAG-GATCGGCAGCACG
* *
17958804 CAGAGGGGGACCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGACCTGGCTCAGTGCCTGA
62 CAG-GGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACC-GGCTCAGTGCC-CA
17958869 -ACGC-TCATTTCATGGGTTGAATTAGGCATACG
124 TACGCAT-ATTTCATGGGTTGAATTAGGCATACG
* * * *
17958901 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCAGGA
1 GAGTTCATTCCCAGTCTAAGATC-AAACGGACCGAGGGTTGC-GTAGCAGGA
17958953 CCAGTAGCAG
Statistics
Matches: 167, Mismatches: 33, Indels: 21
0.76 0.15 0.10
Matches are distributed among these distances:
156 3 0.02
157 30 0.18
158 21 0.13
159 40 0.24
160 68 0.41
161 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAAACGGACCGAGGGTTGCGTAGCAGGATCGGCAGCACGCAGG
GGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCATACGCAT
ATTTCATGGGTTGAATTAGGCATACG
Found at i:17959871 original size:26 final size:26
Alignment explanation
Indices: 17959835--17959887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17959825 GTTGACTTAG
17959835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17959861 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17959887 G
1 G
17959888 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17960215 original size:159 final size:155
Alignment explanation
Indices: 17959861--17960385 Score: 518
Period size: 159 Copynumber: 3.3 Consensus size: 155
17959851 CCCAGTCTAA
17959861 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAACAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAACAGGATCGACA
* * * * * * *
17959926 GCACACCGGGGGGATTGGGTTAATGCCCGGCTTGTGCATTCTACCTCTCTGACCGATT-GAGCAC
66 GCACACAGGGGGGATTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGACTGCTTAGAGC-C
* * *
17959990 CCACACGTCTGTTTCCTAGGTTGGCTTAG
130 GCACAC-TC-GTTTCGTGGGTT-GCTTAG
* * * * * *
17960019 GCATAGGGAGTTCATT-CCATGTCTAAGCCTTAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAACAGGATCGA
* * ** * * * *
17960082 CAGCACGCAGAGGGGGATCGAACCGATCCCCGGCTTGCGCATTATGCCTCTCTGACTAGCTTAGT
64 CAGCACACAG-GGGGGATTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGACT-GCTTAGA
* *
17960147 GCCTGGACACTCGTTTCGTGGGTTGATTGAG
127 GCC-GCACACTCGTTTCGTGGGTTGCTT-AG
* * * * *
17960178 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGCGGCAACAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAACAGGATCGACA
* * * * * *
17960243 GCACACAGGGGTGGATTGGGCTGGTCCTCAGCTTGTGCATTCTGCCTCTCCGACCTGCTGAGCAC
66 GCACACAGGGG-GGATTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGA-CTGCTTAG-AG
* *
17960308 CCGCACACTCATTTCGTGGGTCGGCTTAG
128 CCGCACACTCGTTTCGTGGGT-TGCTTAG
* *
17960337 GCATATGTAGTTCATTCCCAGTCTAAGATCAGATCAGAAT-GAGGGTTGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATCGAGGGTTGT
17960386 AGTAGCAGGA
Statistics
Matches: 292, Mismatches: 61, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 66 0.23
159 198 0.68
160 18 0.06
161 7 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (155 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAACAGGATCGACA
GCACACAGGGGGGATTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGACTGCTTAGAGCCG
CACACTCGTTTCGTGGGTTGCTTAG
Found at i:17960707 original size:26 final size:26
Alignment explanation
Indices: 17960677--17960729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17960667 GTTTACTTAG
*
17960677 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
17960703 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
17960729 G
1 G
17960730 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:17961020 original size:159 final size:161
Alignment explanation
Indices: 17960703--17961366 Score: 549
Period size: 159 Copynumber: 4.2 Consensus size: 161
17960693 CCCAGTCTAA
* ** * * *
17960703 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAAC-AGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAGACTAGACCGAGGGTTGTGGCAGCGAGGATCG
* * * * * * * *
17960765 GCAGCACGCA-AGGGGGACCGAGCCGATCCCCGGCTTGCTCATTCTGCCTCTTCGGTC-GACTGA
65 ACAGCACGCAGAGGGGGATCGCGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTG-CTGA
* * **
17960828 GCGCCCGTACGCCCATTTGGTGGGTTGGTTTAG
129 GCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
*
17960861 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGA-TAGACCGAGGGTTGTGGCAGCGA-GA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGACTAGACCGAGGGTTGTGGCAGCGAGGATC-G
* * * * * *
17960923 GCAGCACGCAGAGGGGGATTGCGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGGCCTGCTCAG
65 ACAGCACGCAGAGGGGGATCGCGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTGAG
17960988 CGCCCG-AGCGCTCATTTCGTGGGTTGACTTAG
130 CGCCCGTA-CGCTCATTTCGTGGGTTGACTTAG
* ** ** *
17961020 GCATACGGAGTTCATTCC-TAATCTAA-TACTAGACCGGACTGAGGGTTGTGGCAGCG-GG-TCC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCTAGACTAGACCGAGGGTTGTGGCAGCGAGGAT-C
* * * ** *
17961081 GACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCC-GATTGGCTT
64 GACAGCACGCAGAGGGGGATCGCGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCT-GCTG
* * * * *
17961145 AACACCCATATGCTCATTTCATGGGTTGACTTAG
128 AGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
** * * ** *
17961179 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GGACT-GAATCGAGGGTTGTGATAG-AAGGATC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAGACTAG-ACCGAGGGTTGTGGCAGCGAGGATC
** * * * * * * *
17961240 GACAGCACGCAG-GGGGGATCAG-ATCGGTCCTCGACTTGTGCATTCTACCTCTCCGACCAGCTG
64 GACAGCACGCAGAGGGGGATC-GCGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTG
* *
17961303 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
128 AGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
*
17961337 GCATACGGAATTCATTCCATGTCTAAGCCC
1 GCATACGGAGTTCATTCCATGTCTAAGCCC
17961367 CAGCCGGATC
Statistics
Matches: 405, Mismatches: 78, Indels: 46
0.77 0.15 0.09
Matches are distributed among these distances:
157 7 0.02
158 148 0.37
159 243 0.60
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (161 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGACTAGACCGAGGGTTGTGGCAGCGAGGATCGA
CAGCACGCAGAGGGGGATCGCGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTGAGC
GCCCGTACGCTCATTTCGTGGGTTGACTTAG
Found at i:17962423 original size:160 final size:160
Alignment explanation
Indices: 17961994--17962587 Score: 509
Period size: 158 Copynumber: 3.7 Consensus size: 160
17961984 GCCGATCCCT
* * * *
17961994 GGCTTGCGCATT-TGCCTCTCCGGTCGGTTGAACGCCCGCACGCTCGTTTCGTGGGCTAG-CTTA
1 GGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTTGACTTA
* * * *
17962057 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAACCGAGGGTTGTTGCAACGGGACCGGCA
66 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGGTTGTGGCAGCGGGACCAGCA
* *
17962122 GCACGCAGAGGAGGACCGACCCAATCCTCA
131 GCACGCAGAGGAGGACCGAACCAATCCTAA
* * * * *
17962152 -GCTTGCGCATTCA-GCCTCTCCGGCCGGCTGAGCACCCGCATGCCCGTTTCATGGGC-TCACTT
1 GGCTTGCGCATT-ATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTTGACTT
* * ** *
17962214 AGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTTAGATTGAGGGTTGTGGCAGTGGGACCAG
65 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGACCGAGGGTTGTGGCAGCGGGACCAG
* * * *
17962279 CAGCATGCAGAGGGGGATCGAACCGATCCTAA
129 CAGCACGCAGAGGAGGACCGAACCAATCCTAA
*
17962311 GGCTTGCGCATTATGCCTCTCCGGCCTGG-TCAGCGCCCGCACGCTCGTTTCGT-GGCTTGACTT
1 GGCTTGCGCATTATGCCTCTCCGGCC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTTGACTT
* * ** * * * * *
17962374 AGGCAAACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCAAGGGTTGCGGCAGCAGGATC
65 AGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TC-GACCGAGGGTTGTGGCAGCGGGACC
* * ** *
17962437 -GACAGCACGTA-AGG-GGTACC-AGGCCGGTTCC--C
127 AG-CAGCACGCAGAGGAGG-ACCGA-ACC-AATCCTAA
* * * * * * * * * * *
17962469 GGCTTGCGCATTCTACCTTTCTGACCGACTGAGCACCCGCACACTCATTTCGTTGG-TTGCCTTA
1 GGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTTGACTTA
* *
17962533 GGCATACGGAGTTCATTCCATGTGTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG
66 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GACCGAGGGTTGTGGCAG
17962588 TAAGACCGAC
Statistics
Matches: 349, Mismatches: 69, Indels: 36
0.77 0.15 0.08
Matches are distributed among these distances:
157 15 0.04
158 165 0.47
159 66 0.19
160 98 0.28
161 5 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (160 bp):
GGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGCTTGACTTA
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGACCGAGGGTTGTGGCAGCGGGACCAGCA
GCACGCAGAGGAGGACCGAACCAATCCTAA
Found at i:17962755 original size:26 final size:26
Alignment explanation
Indices: 17962705--17962757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17962695 GTTGACTTAG
*
17962705 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
17962731 GCATGCGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
17962757 G
1 G
17962758 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:17963976 original size:26 final size:26
Alignment explanation
Indices: 17963947--17963999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17963937 GTTGACTTAG
17963947 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17963973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17963999 G
1 G
17964000 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17964181 original size:26 final size:26
Alignment explanation
Indices: 17964131--17964183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17964121 GTTGGCTTAG
*
17964131 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
17964157 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
17964183 G
1 G
17964184 AGTTTGAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:17965382 original size:26 final size:26
Alignment explanation
Indices: 17965345--17965397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965335 GTTGGCTTAG
*
17965345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
17965371 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17965397 G
1 G
17965398 ATCAACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17965757 original size:26 final size:26
Alignment explanation
Indices: 17965721--17965773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965711 GTTGACTTAG
*
17965721 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17965747 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17965773 G
1 G
17965774 ATCGAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17972594 original size:26 final size:26
Alignment explanation
Indices: 17972565--17972617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17972555 GTTGACTTAG
*
17972565 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
17972591 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17972617 G
1 G
17972618 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17973065 original size:158 final size:158
Alignment explanation
Indices: 17972591--17973093 Score: 505
Period size: 158 Copynumber: 3.2 Consensus size: 158
17972581 CCCAGTCTAA
* * * *
17972591 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGAATCGCGGGTTGCGACAGCAGGATCTG-
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATC-GA
* * * * * * * * *
17972654 CAGCACGCAGGGGGGACCGAGCCAATCCTTGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCA
64 CAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCG
17972719 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * * * * *
17972749 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATCCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * ** * *
17972813 AGCATGCAGAGGGGGA-TAGGGCCGATCCCTGGTTTGCGCGTTATGCCTCTTCGATTAGCTCAGT
65 AGCACGCAG-GGGGGACT-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGC
* * * *
17972877 GCCTGCACGTTCATTTCATGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
17972908 GTATACGGAGTTCACTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGAT
1 GCATACGGAGTTCA-TCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
17972972 AGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
65 AGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGC
*
17973037 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
17973066 GCATACGGAGTTCATTCCATGTCTAAGA
1 GCATACGGAGTTCATCCCATGTCTAAGA
17973094 ATACGGAGTT
Statistics
Matches: 270, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 9 0.03
158 140 0.52
159 116 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATCCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17973116 original size:26 final size:26
Alignment explanation
Indices: 17973068--17973119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17973058 TGGCTTAGGC
*
17973068 ATACGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCATATCTAAGA
17973094 ATACGGAGTTCATTCCCA-ATCTAAGA
1 ATACGGAGTTCATT-CCATATCTAAGA
17973120 TCGGATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGA
Found at i:17973298 original size:26 final size:26
Alignment explanation
Indices: 17973262--17973314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17973252 GTTGACTTAG
17973262 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
17973288 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
17973314 G
1 G
17973315 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:17973302 original size:196 final size:196
Alignment explanation
Indices: 17972963--17973317 Score: 543
Period size: 196 Copynumber: 1.8 Consensus size: 196
17972953 TTACGATAGC
* * *
17972963 AGGATCGATAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
1 AGGATCGATAGCACGAAGGGGGGACTGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCG
* * * * * *
17973028 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
*
17973093 AATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCAGTAGCAGGACTAGCAG
131 AATACGAAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCAGTAGCAGGACTAGCAG
17973158 T
196 T
*
17973159 AGGATCGATAGCACGAAGGGGGGA-TCGGGCCGATCCCCGATTTGCACATTCTGCCTCTCCGGCC
1 AGGATCGATAGCACGAAGGGGGGACT-GGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCC
* *
17973223 GACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-ATCTA
65 GACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCTA
* *
17973287 AGCATACGAAGTTCATTCCCAGTCTAAGATC
129 AGAATACGAAGTTCATTCCCAATCTAAGATC
17973318 AGACTAGAAA
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
195 1 0.01
196 138 0.97
197 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
AGGATCGATAGCACGAAGGGGGGACTGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCG
ACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAAG
AATACGAAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCAGTAGCAGGACTAGCAG
T
Found at i:17973588 original size:158 final size:156
Alignment explanation
Indices: 17973344--17973629 Score: 342
Period size: 158 Copynumber: 1.8 Consensus size: 156
17973334 TACGGCAGTA
* * *
17973344 GGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCGATCGG
1 GGATCGACAGCACGCAAGGGCGACCGAGCCGATCCCCAGCTTGCGCATTCAGCCTCTCCGACCGG
* * ** * * *
17973409 TTGAGCACCTGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ACGTCTAAG
66 CTCAGCACCCACACGCCTGTTTC-TGGGTTGACTTAGGCATACGGAGTTCAGTCCTA-GTCTAAG
17973473 CCCCAGCCAGATTGAGGCTGTGGCAGCG
129 CCCCAGCCAGATTGAGGCTGTGGCAGCG
* * * *
17973501 GGATCGACAGCATGCAGAGGGCGATCGGGCCGATCCCCAGCTTGCGCATT-ACGCCTCTTCGACC
1 GGATCGACAGCACGCA-AGGGCGACCGAGCCGATCCCCAGCTTGCGCATTCA-GCCTCTCCGACC
* * * * * *
17973565 GGCTCAGCGCCCATACGCTTGTTTCTGTGTTGACTTATGCGTACGGAGTTCAGTCCTAGTCTAAG
64 GGCTCAGCACCCACACGCCTGTTTCTGGGTTGACTTAGGCATACGGAGTTCAGTCCTAGTCTAAG
17973630 ATCAGATCGG
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
157 48 0.45
158 58 0.55
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (156 bp):
GGATCGACAGCACGCAAGGGCGACCGAGCCGATCCCCAGCTTGCGCATTCAGCCTCTCCGACCGG
CTCAGCACCCACACGCCTGTTTCTGGGTTGACTTAGGCATACGGAGTTCAGTCCTAGTCTAAGCC
CCAGCCAGATTGAGGCTGTGGCAGCG
Found at i:17974508 original size:26 final size:26
Alignment explanation
Indices: 17974471--17974523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17974461 GTGGACTTAG
*
17974471 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17974497 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17974523 G
1 G
17974524 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17974804 original size:159 final size:157
Alignment explanation
Indices: 17974533--17974999 Score: 491
Period size: 159 Copynumber: 2.9 Consensus size: 157
17974523 GATCAAACTG
* * * *
17974533 GACCGAGGGTTGC-GGCAGTGGGATCTACAGCACGAAGGGGGGACCGGGTCGATCCCTGACTTGC
1 GACCAAGGGTT-CTGGCAG-GGGATCGACAGCACGTAGGGGGGACC-GGTCGATCCCTGGCTTGC
* * * * *
17974597 GCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATAG
63 GCATTCTGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAC
17974661 GGAGTTCATTCCATGTCTAAGCCCCA-ACCA
127 GGAGTTCATTCCATGTCTAAGCCCCAGACCA
* * *
17974691 GACCAAGGGTTCTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGC
1 GACCAAGGGTTCTGGCAG-GGGATCGACAGCACGTAG-GGGGGACC-GGTCGATCCCTGGCTTGC
* * * * *
17974756 GCATTATGCCTCTTCGGTCGGCTCAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTATGCATACG
63 GCATTCTGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
** **
17974821 GAGTTCATTCCCA-GTCTAAG-GTCAGACTG
128 GAGTTCATT-CCATGTCTAAGCCCCAGACCA
* * * * * *
17974850 GACCGAA-GGTTATAGCAGGAGGATTGACAGCACATAGGGGGGACTCGGTTGATCCCTGGCTTGT
1 GACC-AAGGGTTCTGGCAGG-GGATCGACAGCACGTAGGGGGGAC-CGGTCGATCCCTGGCTTGC
* *
17974914 GCATTCTGCCTCTCCGGTCGG-TCGAACG-CTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA
63 GCATTCTGCCTCTCCGGTCGGCTC-AGCGCCT-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
17974977 CAGAGTTCATTCCATGTCTAAGC
126 CGGAGTTCATTCCATGTCTAAGC
17975000 ATACGGAGTT
Statistics
Matches: 257, Mismatches: 40, Indels: 23
0.80 0.12 0.07
Matches are distributed among these distances:
157 8 0.03
158 121 0.47
159 122 0.47
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GACCAAGGGTTCTGGCAGGGGATCGACAGCACGTAGGGGGGACCGGTCGATCCCTGGCTTGCGCA
TTCTGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGACCA
Found at i:17974953 original size:158 final size:156
Alignment explanation
Indices: 17974497--17974998 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 156
17974487 CCCAGTCTAA
* * ** *
17974497 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGTGGGATCT-A
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AACTGGACCGAAGGTTATGGCAGCGGGAT-TGA
* *
17974560 CAGCACGA-AGGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGG-CTGAG
63 CAGCAC-ATAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTC-GAG
* *
17974623 CTCCCGCACGC-CTGTTTTGTGGGTTGGCTTAG
126 C-GCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** ** * **
17974655 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC-AAGGGTTCTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACTGGACCGAA-GGTTATGGCAGCGGGATTGAC
* * * * *
17974719 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTC-AGC
64 AGCACATAG-GGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG-TCGAGC
* * *
17974783 GCCTGTACGCTCGTTTCGTGGGTTGACTTAT
127 GCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
17974814 GCATACGGAGTTCATTCCCA-GTCTAAGGTCAGACTGGACCGAAGGTTATAGCAG-GAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACTGGACCGAAGGTTATGGCAGCG-GGATTGA
* * *
17974877 CAGCACATAGGGGGGACTC-GGTTGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGTCGAAC
63 CAGCACATAGGGGGGAC-CAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTCGAGC
*
17974941 GCTCGCATGCTCGTTTCGTGGGTTGGCTTAG
127 GC-CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
17974972 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17974999 CATACGGAGT
Statistics
Matches: 280, Mismatches: 46, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
157 9 0.03
158 144 0.51
159 120 0.43
160 6 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACTGGACCGAAGGTTATGGCAGCGGGATTGACAG
CACATAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTCGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:17975022 original size:26 final size:26
Alignment explanation
Indices: 17974972--17975024 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17974962 GTTGGCTTAG
*
17974972 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
*
17974998 GCATACGGAGTTCATTCC-CGATCTAA
1 GCATACAGAGTTCATTCCACG-TCTAA
17975024 G
1 G
17975025 ATTTTGAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:17975753 original size:26 final size:26
Alignment explanation
Indices: 17975717--17975766 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17975707 TTGATTTAGG
17975717 CATATGGAGTTCATCCCCAGTCTAGA
1 CATATGGAGTTCATCCCCAGTCTAGA
*
17975743 CATATGGAGTTCATTCCCAGTCTA
1 CATATGGAGTTCATCCCCAGTCTA
17975767 AGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAGA
Found at i:17976043 original size:159 final size:160
Alignment explanation
Indices: 17975815--17976106 Score: 385
Period size: 159 Copynumber: 1.8 Consensus size: 160
17975805 TAACATGTAG
* * * * *
17975815 GGGGTACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTACCCGCACGTC
1 GGGGTACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTACCCGCACGTC
** ** * *
17975880 CATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAG
66 CATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAG
17975943 GGTTGTGGTAGTGAGACCGACAGCATGCAGAA
129 GGTTGTGGTAGTGAGACCGACAGCATGCAGAA
* * * *
17975975 GGGG-ACCGAGCCAATCCCTGGCTTGCGTATTATGCCTCTCCGGTCGGCTCAGTGCCCGCATG-C
1 GGGGTACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTACCCGCACGTC
*
17976038 TCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
66 -CATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGG
17976103 GTTG
130 GTTG
17976107 CAGCAGCAAG
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 4 0.04
159 102 0.90
160 7 0.06
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (160 bp):
GGGGTACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTACCCGCACGTC
CATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGG
TTGTGGTAGTGAGACCGACAGCATGCAGAA
Found at i:17976266 original size:26 final size:26
Alignment explanation
Indices: 17976217--17976267 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17976207 TTGGCTTAGG
* *
17976217 CATACTGAGTTCATTCCACGTCTAAC
1 CATACGGAGTTCATTCCACATCTAAC
17976243 CATACGGAGTTCATTCC-CAATCTAA
1 CATACGGAGTTCATTCCAC-ATCTAA
17976268 GATCGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCACATCTAAC
Found at i:17976540 original size:171 final size:170
Alignment explanation
Indices: 17976276--17976610 Score: 397
Period size: 171 Copynumber: 2.0 Consensus size: 170
17976266 AAGATCGGAT
* * *
17976276 CGGATCGAGGGTTGTGACAGCAGGACCAGCAACAGGATCGACAGCATGCAGGGGGGGATCGGGTC
1 CGGACCGAGGGTTGTGACAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGATCGGGTC
* * * * * * **
17976341 GATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCCCACATG-TTCATTTTGTGGGT
66 GATCCCCAGCTCGCACATTATACCTCTCCGCCCGACTAAGCGCACACAAGCTTC--TTCATGGGT
* *
17976405 TGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCCCCAGC
129 TGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCCCCAGC
* * * * *
17976447 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGATCGGG-C
1 CGGACCGAGGGTTGTGACAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGATCGGGTC
* * * * *
17976511 TGATCCCCGGCTCGCGCATTATGCCTCTCCGCCCGGCTAAGCGCACGCAAGCTTCTTCATGGGTT
66 -GATCCCCAGCTCGCACATTATACCTCTCCGCCCGACTAAGCGCACACAAGCTTCTTCATGGGTT
*
17976576 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
130 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
17976611 ATACGGAGTT
Statistics
Matches: 137, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
170 37 0.27
171 97 0.71
172 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (170 bp):
CGGACCGAGGGTTGTGACAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGATCGGGTC
GATCCCCAGCTCGCACATTATACCTCTCCGCCCGACTAAGCGCACACAAGCTTCTTCATGGGTTG
ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCCCCAGC
Found at i:17976613 original size:26 final size:25
Alignment explanation
Indices: 17976583--17976634 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17976573 GTTGACTTAG
17976583 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAG-CTAA
*
17976609 GCATACGGAGTTCATTCCCAGCTAA
1 GCATACGGAGTTCATCCCCAGCTAA
17976634 G
1 G
17976635 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGCTAA
Found at i:17976903 original size:98 final size:98
Alignment explanation
Indices: 17976732--17976910 Score: 245
Period size: 98 Copynumber: 1.8 Consensus size: 98
17976722 CAGCCGGTTG
* * * * *
17976732 AGCACCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGTCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACC
* *
17976797 AGTCAGACCGATGGTTGTGGCAGCGGGACCGGC
66 AGACAGACCGAGGGTTGTGGCAGCGGGACCGGC
* *
17976830 AGCACCCGCACG-CTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCAAGTCTAAG-AT
1 AGCACCCGCACGTC-CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCAC
17976893 CAGACTAGACCGAGGGTT
65 CAGAC-AGACCGAGGGTT
17976911 ACAGCAGTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
97 5 0.07
98 65 0.93
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (98 bp):
AGCACCCGCACGTCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACC
AGACAGACCGAGGGTTGTGGCAGCGGGACCGGC
Found at i:17976932 original size:98 final size:98
Alignment explanation
Indices: 17976732--17976932 Score: 208
Period size: 98 Copynumber: 2.1 Consensus size: 98
17976722 CAGCCGGTTG
* * * * *
17976732 AGCACCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACGTCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACC
* * *** ** *
17976797 AGTCAGACCGATGGTTGTGGCAGCGGGACCGGC
66 AGACAGACCGAGGGTTACAGCAGCAAGACCGAC
* *
17976830 AGCACCCGCACG-CTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCAAGTCTAAG-AT
1 AGCACCCGCACGTC-CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCAC
* * *
17976893 CAGACTAGACCGAGGGTTACAGCAGTAAGATCGAT
65 CAGAC-AGACCGAGGGTTACAGCAGCAAGACCGAC
17976928 AGCAC
1 AGCAC
17976933 GTAGGGGGGT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
97 5 0.06
98 78 0.94
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (98 bp):
AGCACCCGCACGTCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCACC
AGACAGACCGAGGGTTACAGCAGCAAGACCGAC
Found at i:17977061 original size:26 final size:25
Alignment explanation
Indices: 17977022--17977073 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17977012 GTTGGCTTAG
*
17977022 GCATACGGGTTCATTC-CATGTCTAA
1 GCATACGAGTTCATTCTCA-GTCTAA
17977047 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATAC-GAGTTCATTCTCAGTCTAA
17977073 G
1 G
17977074 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 16 0.67
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCTCAGTCTAA
Found at i:17977749 original size:26 final size:26
Alignment explanation
Indices: 17977719--17977771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17977709 GTTGGCTTAG
17977719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17977745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17977771 G
1 G
17977772 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17978491 original size:26 final size:26
Alignment explanation
Indices: 17978452--17978504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978442 GTTGGCTTAG
*
17978452 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17978478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17978504 G
1 G
17978505 ATTAGTGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17978811 original size:725 final size:729
Alignment explanation
Indices: 17977184--17979978 Score: 4101
Period size: 725 Copynumber: 3.8 Consensus size: 729
17977174 CGACGGCATT
* * * *
17977184 GGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTGTCTC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATC-C
* *
17977249 -TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTG-CA
65 ATCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCA
* * * * *
17977312 GTAGCCATTAAAGTGTCT-AGAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACATTT
130 GTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTT
* **
17977376 TGAGTTTTTAGCTGAAGCT-TTTTGTGCATGCCAA-AAAAAATACAAGGATCACCTCTACCAAAT
194 CGAGTTTTTAGCT-AAATTGTTTTGTGCATGCCAACAAAAAA-ACAAGGATCACCTCTACCAAAT
* * *
17977439 TTGGGAACAAAACTCTTTCAAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
257 TTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * **
17977504 ATGAAAAATAGGAAACGGGTTGTCTTCCCACAAAACTTCACATGAAGGCTTAGGGGACCATTGTA
322 ATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTA
* *
17977569 TGAATTTACATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
387 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTGAACCCACC
* *
17977634 TACCACCCGTTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCTGGCTGAGCGCCCGCACGCT
452 TACCACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACC-GGCTGAGCGCCCGCACGCT
* *
17977699 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
516 CTTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
*
17977764 AGTCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACTTTTTTTT
581 AGTCTAAGA-TTT----CAC-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTTT
17977829 CGCCAGGGGCACCATCGTCGAAGCATCGCCAATGCATCGCCAGAGAGCCTAACCGGCAGCATTGG
640 CGCCAGGGGCACCATCGTCGAAGCATCGCCAATGCATCGCCAGAGAGCCTAACCGGCAGCATTGG
17977894 GGGTT-CGACGATTGGAGGGGTCGG
705 GGGTTCCGACGATTGGAGGGGTCGG
17977918 GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCA
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCA
*
17977983 TCATGAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
*
17978048 TAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
17978113 AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACCAAATTTGG
196 AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACCAAATTTGG
* *
17978178 GGACAAAACTCTTTTTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGA
261 GGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* *
17978243 ATAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGGCCATTGTATGAA
326 AAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
**
17978308 TTTACAAGCCA-AAAAATGGCATTGGTGTGGCAGAAATATGAAGATGTGCCTGAACCCACCTACC
391 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTGAACCCACCTACC
*
17978372 ACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCTTTT
456 ACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCTTTT
** *
17978437 TGCGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
521 TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
*
17978502 AAGA-TT-A-GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACTTTTTTTTCGCCAGGGGCA
586 AAGATTTCACGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTTTCGCCAGGGGCA
17978564 CCATCGTCGAAGCATCGCCAATGCATCGCCAGAGAGCCTAACCGGCAGCATTGGGGGTTCCGACG
651 CCATCGTCGAAGCATCGCCAATGCATCGCCAGAGAGCCTAACCGGCAGCATTGGGGGTTCCGACG
*
17978629 ATTCGAGGGGTCGG
716 ATTGGAGGGGTCGG
*
17978643 GGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCA
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCA
*
17978708 TCATGAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
17978773 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
17978838 AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACCAAATTTGG
196 AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACCAAATTTGG
* *
17978903 GGACAAAACTCTTTTTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGA
261 GGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * * *
17978968 ATAATAGAAAACAGATCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGGCCATTGTATGAA
326 AAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
*
17979033 TTTACAAGCCATAAAAATGGCATTGGCGTGGCAGAAATATGAAGATGTGCCTGAACCCACCTACC
391 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTGAACCCACCTACC
*
17979098 ACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCTTTT
456 ACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCTTTT
17979163 TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
521 TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
17979228 AAGATTTTGAGCCACGGTGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACTTTTTTTTCACCC
586 AAGA-TTT----CAC-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTTTCGCCA
*** * * * * *
17979293 GGGGCACCATTACCAAAGCGTCACGCCGAA--CATTCACCGGGAGAGCCTAAATCGGCAGCATTC
645 GGGGCACCATCGTCGAAGCAT--CGCC-AATGCA-TCGCC-AGAGAGCCT-AACCGGCAGCATT-
* *
17979356 GGGGGTTCC-ACGCGATTGGGGGCGGTC-A
703 GGGGGTTCCGA--CGATTGGAGG-GGTCGG
* * *
17979384 GCGGGTGGTGCGCAACATGATGTGTGATGGAGT-TCCTGGTAGTTGG-CCTTATATTGGCCCCCT
1 GGGGGT-GTGCGC-ACATGATGTGCGATGG-GTGT--TGGTACTTGGCCCTTATATTGGCCCCCT
* *
17979447 ATCCCTCATCAAACCTCGAGAACTCAC-CACCCCTTAAAGAGCATTTGGAGATTTTATAGGTTTG
61 ATCCATCATCAAACCTCGAGAACTCACAC-CCCCTTAAACAGCATTT-GAGATTTTATAGGTTTG
* **
17979511 CTGGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGAACACTTTTTTCAAATGGTCACAAAAT-AG
124 CT-GCCAGTAGCCATTAAAGTGTCTG-AAATGGGG-ACACTTTTTTCAAACGGTCACAAAATCTT
* * * * * *
17979575 CTCCACTTCGAGTTTTTAGGCTGAATTTTTTTGGGCATGCCAACCCAAAATAC-AGAATCACCTC
186 CTCCACTTCGAGTTTTTA-GCTAAATTGTTTTGTGCATGCCAA-CAAAAAAACAAGGATCACCTC
* * *
17979639 TACCAAA-TTGGTG-C-AAACGCTTTCTAAAAAAATTTTAAAAAATCCCCGCACCG-AAAAAGTT
249 TACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAAT-CCCGAACCGTAAAAAGTT
** *
17979700 TCAAAAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATTAAACTTCACATGAAGGCTTAGGG
313 TC-AAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGG
** * *
17979765 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCACAAATATGAAGATGTGCT
377 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC
* * * * * * **
17979830 TGAACTCACCTACCACCCGCTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGC
442 TGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
17979895 CCGCACGCT-TGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGG
507 CCGCACGCTCT-TTTTATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGG
*
17979958 AGTTCATTCCCAGCCTAAGAT
570 AGTTCATTCCCAGTCTAAGAT
17979979 CATACCAGAC
Statistics
Matches: 1910, Mismatches: 109, Indels: 73
0.91 0.05 0.03
Matches are distributed among these distances:
724 112 0.06
725 415 0.22
726 184 0.10
728 2 0.00
731 2 0.00
733 89 0.05
734 209 0.11
735 301 0.16
736 9 0.00
737 8 0.00
738 10 0.01
739 13 0.01
740 9 0.00
741 13 0.01
742 10 0.01
743 18 0.01
744 60 0.03
745 67 0.04
746 275 0.14
747 34 0.02
748 63 0.03
749 7 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (729 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCA
TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
AGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCACCTCTACCAAATTTGG
GGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTGAACCCACCTACC
ACCCGTTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCTTTT
TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATTTCACGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTTTCGCCAGGGGCA
CCATCGTCGAAGCATCGCCAATGCATCGCCAGAGAGCCTAACCGGCAGCATTGGGGGTTCCGACG
ATTGGAGGGGTCGG
Found at i:17979214 original size:26 final size:26
Alignment explanation
Indices: 17979178--17979230 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17979168 GTTGGCTTAG
17979178 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17979204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17979230 G
1 G
17979231 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17979961 original size:26 final size:26
Alignment explanation
Indices: 17979924--17979976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17979914 GTTGACTTAG
*
17979924 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* *
17979950 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
17979976 G
1 G
17979977 ATCATACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:17980369 original size:159 final size:157
Alignment explanation
Indices: 17979950--17980449 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 157
17979940 CCCAGTCTAA
* * * * ** * * *
17979950 GCATACGGAGTTCATTCCCA-GCCTAAGATCATACCAGACCGAGGGTTACGACAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCACATCGGACCGAGGGTTGTGGCAGCAGGATCGAA
** * * * *
17980014 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTAACAATCTGCCTCTCCGGTCGGCTGAGCGCC
65 AGCACACAGGGGGGATCGGTCCGATCCCCGGCTTAGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
17980079 CGTAC-GTCAATTTCGTGGGTTGGCTTAG
130 CGTACGGTC-ATTTCGTGGGTTGGCTTAG
* * * * * * * *
17980107 G-ATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTTGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCACA-TCGGACCGAGGGTTGTGGCAGCAGGATCGAA
* * * * *
17980170 AGCATGCA-AAGGGGGATCGGTCCGATCCCGGGCTTGGCATTATGCCTCTCCGGCCGGCTCAGCG
65 AGCA--CACAGGGGGGATCGGTCCGATCCCCGGCTTAGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
17980234 CCCGCTACGGTCATTTCGTGGGTTGACCTAG
128 CCCG-TACGGTCATTTCGTGGGTTGGCTTAG
**
17980265 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCACATCGGACCGAGGGTTGTGGCAGCAGGATCGAA
* * * * * * * *
17980329 AGCACACAGGGGGGACCGAGTCAG-TCCCCAGCTTACGCATTCTCCCTTTCCGACCTGCTGAGTG
65 AGCACACAGGGGGGATCG-GTCCGATCCCCGGCTTA-GCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
17980393 CCCGTACGCTCGTTTTGTGGGTAGGCTTAG
128 CCCGTACGGTCATTTCGTGGGTTGGCTTAG
17980423 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
17980450 CATACGGAGT
Statistics
Matches: 273, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
155 5 0.02
156 43 0.16
157 57 0.21
158 81 0.30
159 82 0.30
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCACATCGGACCGAGGGTTGTGGCAGCAGGATCGAAA
GCACACAGGGGGGATCGGTCCGATCCCCGGCTTAGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GTACGGTCATTTCGTGGGTTGGCTTAG
Found at i:17980447 original size:158 final size:156
Alignment explanation
Indices: 17980057--17980450 Score: 402
Period size: 158 Copynumber: 2.5 Consensus size: 156
17980047 TAACAATCTG
** *
17980057 CCTCTCCGGTCGGCTGAGCGCCCGTACGTCAATTTCGTGGGTTGGCTTAGG-ATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCGTACGTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
17980121 TCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTTGCAGCGGGACCGACAGCATGCAAAGGGGGA
65 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGAAAGCA-GCAAAGGGGGA
* * ** * *
17980186 TCGGTCCGATCCCGGGCTTGGCATTATG
129 CCGGTCAGATCCCCAGCTTCGCATTATC
* * * *
17980214 CCTCTCCGGCCGGCTCAGCGCCCGCTACGGTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCA
1 CCTCTCCGACCGGCTGAGCGCCCG-TAC-GTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
** * * *
17980279 TTCCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAAAGCA-CACAGGGG
64 TT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGAAAGCAGCA-AAGGG
*
17980341 GGACCGAGTCAG-TCCCCAGCTTACGCATTCTC
126 GGACCG-GTCAGATCCCCAGCTT-CGCATTATC
* * * * * *
17980373 CCTTTCCGACCTGCTGAGTGCCCGTACGCTCGTTTTGTGGGTAGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCGTACG-TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
17980438 TCCATGTCTAAGC
65 TCCATGTCTAAGC
17980451 ATACGGAGTT
Statistics
Matches: 195, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
157 28 0.14
158 82 0.42
159 82 0.42
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (156 bp):
CCTCTCCGACCGGCTGAGCGCCCGTACGTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGAAAGCAGCAAAGGGGGACC
GGTCAGATCCCCAGCTTCGCATTATC
Found at i:17980452 original size:26 final size:26
Alignment explanation
Indices: 17980423--17980475 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17980413 GTAGGCTTAG
17980423 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17980449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17980475 G
1 G
17980476 ATGGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17981236 original size:515 final size:510
Alignment explanation
Indices: 17979854--17981506 Score: 1846
Period size: 514 Copynumber: 3.2 Consensus size: 510
17979844 ACCCGCTCGA
* * * * * * *
17979854 TCCCCGGCTTACGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTGA
1 TCCCCGGCTTGCGCATTCTGCCTCTCCGG-CTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * * ***
17979919 CTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCATA
65 CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* *
17979983 CCAGACCGAGGGTTACG--ACA-G----T-AG--GATCGATAGCAT-GCA-GGGGGGATCGGGCC
129 CCAGACCGAGGGTTGCGTAACAGGACCATCAGCAGATCGATAGC-TCGCAGGGGGGGATCGGGCT
* * * * * *
17980036 GATCCCCGGCTT-AACAATCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGTCAATTTCGTGGGTT
193 GAT-CCCGACTTGAGCATTCTGCCTCT-CAGTCGGCTGAGCGCCCGTACGCCAGTTTCGTGGGTT
* * * *
17980100 GGCTTAGG-ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTTGCAGCGGG
256 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGG
* * * * * * * *
17980164 ACCGACAGCATGCAAAGGGGGATCGGTCCGATCCCGGGCTTG-GCATTATGCCTCTCCGGCCGGC
321 ACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGC
** * *
17980228 TCAGCGCCCGCTACGGTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGA
386 TCAGCGCCCGC-ACATTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
17980293 TCGGATCGGACCGAGGGTTGTGGCAGCA-GGATCGAAAGCACACAGGGGGGACC-GAGTCAG
450 TCGGATCGGACCGAGGGTTGCGACAGCATAGATCGACAGCACACAGGGGGGACCAG-GTCAG
* * * * * * * * *
17980353 TCCCCAGCTTACGCATTCTCCCTTTCCGACCTGCTGAGTGCCCGTACGCTCGTTTTGTGGGTAGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCCG-GCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* *
17980418 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGAT
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* ** * * * * * * *
17980483 CAGACTGAGGGTTGCGGTAGTAGTACCAGCAGCAAGATCGACAGCACGTAGGGGGTG-CCGGGCT
130 CAGACCGAGGGTTGC-GTAACAGGACCATCAGC-AGATCGATAGCTCGCAGGGGGGGATCGGGCT
* * * * * ** *
17980547 GATCCCCATCTTGTGCATTCTGCCTCTCCGACCGACTGAATGCCCGTACGCCCGTTTCGTGGGTT
193 GATCCCGA-CTTGAGCATTCTGCCTCTCAG-TCGGCTGAGCGCCCGTACGCCAGTTTCGTGGGTT
* *
17980612 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGTGGG
256 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGG
** * * *
17980677 ACCGACAGCACGTAGAGGGGGACTAGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGC
321 ACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGC
* * *
17980742 TCAGTGCCCGCACATTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGAT
386 TCAGCGCCCGCACATTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
17980807 CGAATCGGACCGAGGGTTGCGATAGCATAAAT-GACAGCATGC-CGGGGGGGACCAGGTCAG
451 CGGATCGGACCGAGGGTTGCGACAGCATAGATCGACAGCA--CACAGGGGGGACCAGGTCAG
* * *
17980867 TCCCTGGCTTGCGTATTCTGCCTCTCCGGCTAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* *
17980932 CTTAGGCGTACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGAC
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * *
17980997 CGGACCGAGGGTTGCGATAACAGGACCATCAGCATGATCGGTAACTCGCAGGGGGGGATCGGGCT
130 CAGACCGAGGGTTGCG-TAACAGGACCATCAGCA-GATCGATAGCTCGCAGGGGGGGATCGGGCT
* * * * *
17981062 GATCCCTGACTTGCGCATTCTACCTCTCTAGTCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTT
193 GATCCC-GACTTGAGCATTCTGCCTCTC-AGTCGGCTGAGCGCCCGTACGCCAGTTTCGTGGGTT
*
17981127 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTTGTGGCAGCGGG
256 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGG
* * *
17981192 ACCGGCAGCACGTAGAGGGGGACCGGGCCGACCCCCGACTTGCGCATTATGCCTCTTCGGTCGGC
321 ACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGC
* * * *
17981257 TTAGCGCCCGCACGCTT-GTTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCCAGTCTAAGA
386 TCAGCGCCCGCAC-ATTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
17981321 TTGGACCGGACCGAGGGTTGCGACAG--TAGGATCAACAACACACAGGGGGGACTAGG-CTG
450 TCGGATCGGACCGAGGGTTGCGACAGCATA-GATCGACAGCACACAGGGGGGACCAGGTCAG
* * * * *
17981380 ATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTT
1 -TCCCCGGCTTGCGCATTCTGCCTCTCCG-GCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
17981445 GCTTAGGCATACGGAGTTCATTCCATGTATAAGCATATGGAGTTCATT-CCATGTCTAAGATT
64 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA-GTCTAAGATT
17981507 TTGAGCCACA
Statistics
Matches: 961, Mismatches: 155, Indels: 61
0.82 0.13 0.05
Matches are distributed among these distances:
498 3 0.00
499 119 0.12
500 1 0.00
502 1 0.00
508 2 0.00
510 3 0.00
511 24 0.02
512 51 0.05
513 171 0.18
514 323 0.34
515 259 0.27
516 4 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (510 bp):
TCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
AGACCGAGGGTTGCGTAACAGGACCATCAGCAGATCGATAGCTCGCAGGGGGGGATCGGGCTGAT
CCCGACTTGAGCATTCTGCCTCTCAGTCGGCTGAGCGCCCGTACGCCAGTTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGA
CAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
GCCCGCACATTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
CGGACCGAGGGTTGCGACAGCATAGATCGACAGCACACAGGGGGGACCAGGTCAG
Found at i:17981338 original size:159 final size:159
Alignment explanation
Indices: 17981048--17981478 Score: 458
Period size: 159 Copynumber: 2.7 Consensus size: 159
17981038 TAACTCGCAG
* * * * * *
17981048 GGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTACCTC-TCTAGTCGGCTGAGCACCCGCACG
1 GGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTC-GGTCGGCTGAGCGCCCGCACG
* * *
17981112 CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCAAGCCGGACCAA
65 CTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCAAGCCGGACCAA
* * * ** * **
17981176 GGGTTGTGGCAGCGGGACCGGCAGCACGTA
130 GGGTTGCGACAGCAGGACCAACAACACACA
* * *
17981206 GAGGGGGACCGGGCCGACCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTTAGCGCCCGCACG
1 G-GGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACG
* * **** *
17981271 CTTGTTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCG
65 CTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCAAG-CCGGACCA
* *
17981334 AGGGTTGCGACAGTAGGATCAACAACACACA
129 AGGGTTGCGACAGCAGGACCAACAACACACA
** * * * *
17981365 GGGGGGACTAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCTGCACGC
1 GGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGC
* * *
17981430 TCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATT-CCATGTATAAGC
66 TTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGC
17981479 ATATGGAGTT
Statistics
Matches: 224, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 96 0.43
159 120 0.54
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGC
TTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCAAGCCGGACCAAG
GGTTGCGACAGCAGGACCAACAACACACA
Found at i:17981487 original size:26 final size:26
Alignment explanation
Indices: 17981451--17981503 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17981441 GTTTGCTTAG
17981451 GCATACGGAGTTCATTCCATGTATAA
1 GCATACGGAGTTCATTCCATGTATAA
* *
17981477 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
17981503 G
1 G
17981504 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:17982189 original size:26 final size:26
Alignment explanation
Indices: 17982160--17982212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982150 GTTGACTTAG
* *
17982160 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
17982186 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17982212 G
1 G
17982213 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17982562 original size:26 final size:26
Alignment explanation
Indices: 17982526--17982578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982516 GTTGACTTAG
*
17982526 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
17982552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
17982578 G
1 G
17982579 ATCGGATAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:17982898 original size:159 final size:158
Alignment explanation
Indices: 17982588--17983035 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 158
17982578 GATCGGATAG
* * * * *
17982588 CAGGATTGGTAGCACGCAGGGGGGATCGGTTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCT
1 CAGGATCGGTAGAACGCAGGGGGGATCGGGTCGATCCCTGGCTTATGCATTATGCCTCTCCGGCT
* * * * * * * *
17982653 GACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAA
66 GACTCAGTACCCACACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
* * *
17982718 GCCCCAGTCGGACCGAGGGTTG-TGGCAA
131 GCCCCAGCCGAACCGAAGGTTGCT-GCAA
* * * *
17982746 CAGGATCGGTAGAACGTAGAGGGGGATCGGGTCGATCCTTGGTTTATGCATTATGCCTCTTCGGC
1 CAGGATCGGTAGAACGCAG-GGGGGATCGGGTCGATCCCTGGCTTATGCATTATGCCTCTCCGGC
* *
17982811 TGGCTCAGTACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCT
65 TGACTCAGTACCCACACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCT
** * *
17982875 AAG-ATCGGACCGAACCGAAGGTTGCTGCAG
129 AAGCCCCAG-CCGAACCGAAGGTTGCTGCAA
* * * * * * * ** * *
17982905 CAGGATCGATAGCATGCA-GGGGCA-CTGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCC-GA
1 CAGGATCGGTAGAACGCAGGGGGGATC-GGGTCGATCCCTGGCTTATGCATTATGCCTCTCCGGC
* * * * * * *
17982967 TCGATTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCATAGGCATACGAAGTTCATTCCATGTCT
65 T-GACTCAGTACCCACACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCT
17983032 AAGC
129 AAGC
17983036 ATATGGAGTT
Statistics
Matches: 234, Mismatches: 48, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 6 0.03
157 85 0.36
158 18 0.08
159 122 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CAGGATCGGTAGAACGCAGGGGGGATCGGGTCGATCCCTGGCTTATGCATTATGCCTCTCCGGCT
GACTCAGTACCCACACACCCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
GCCCCAGCCGAACCGAAGGTTGCTGCAA
Found at i:17983756 original size:159 final size:158
Alignment explanation
Indices: 17983455--17983746 Score: 365
Period size: 159 Copynumber: 1.8 Consensus size: 158
17983445 GATCGGACCG
* * *
17983455 AGGGTTGTGGCAGCAGGATCAGCAGCACATAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTC
1 AGGGTTGTGGCAGCAGGATCAGCAGCACATAGGGGGGATCGAGCCGATCCCCAGCTTACACATTA
* * * * * *
17983520 TGCCTCTCCGGTCGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCAGCCGGCTCAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTC
17983585 ATTACATGTCTAAACCCCAGTCGGATCA
131 ATTACATGTCTAAACCCCAGTCGGATCA
** * *
17983613 AGGGTTGTGGCAGC-GG-TACAGACAGCATGTAGAGGGGGATC-AGGCTGATCCCCAGCTTGCAC
1 AGGGTTGTGGCAGCAGGAT-CAG-CAGCACATAG-GGGGGATCGA-GCCGATCCCCAGCTTACAC
* * * * *
17983675 ATTATGCCTCTTCAGCCGGCTCAGCACCCGCACACTCTTTTCATGGGTTGACTTATGCATATGGA
62 ATTATGCCTCTCCAGCCGGCTCAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGGGA
17983740 GTTCATT
127 GTTCATT
17983747 CCCAGTCTAA
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 5 0.04
158 23 0.21
159 83 0.74
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGTTGTGGCAGCAGGATCAGCAGCACATAGGGGGGATCGAGCCGATCCCCAGCTTACACATTA
TGCCTCTCCAGCCGGCTCAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTC
ATTACATGTCTAAACCCCAGTCGGATCA
Found at i:17983926 original size:26 final size:26
Alignment explanation
Indices: 17983890--17983942 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17983880 GTTGGCGTAG
17983890 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17983916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17983942 G
1 G
17983943 ATTCTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17984994 original size:171 final size:171
Alignment explanation
Indices: 17984688--17984995 Score: 366
Period size: 171 Copynumber: 1.8 Consensus size: 171
17984678 CAAGGGTTGC
* * * * *
17984688 GGCAGCAGGACTAGTAGTAGGATCGACAGCACGCAAGGGGGGACTAGGCCGATCCCCGGCTTGCG
1 GGCAGCAGGACCAGTAGCAGGATCAACAGCACGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCG
* * * ** * * * *
17984753 CATTCTACCTCTCCGATCGACTGAGTGCCTGCACGCTCATTTCGCGGATTGGCTTAGGCATACAG
66 CATTATACCTCTCCGACCGACTCAACGCCCGCAAGCTCATTTCACGGATTGACTTAGGCATACAG
17984818 AGTTCATTCCATATCTAAGCCCCAGCTAGACCGGGGGTTAT
131 AGTTCATTCCATATCTAAGCCCCAGCTAGACCGGGGGTTAT
* * * *
17984859 GGCAGCAGGACCGGTAGCGGGATCAACAGCACGCAAAGGGGGACCGGGCTGATCCCCGGCTTGCG
1 GGCAGCAGGACCAGTAGCAGGATCAACAGCACGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCG
* * * * * * * *
17984924 CATTATGCCTCTTCGGCC-AGCTCAACGCCCGCAAGCTCATTTCATGGGTTGACTTATGCCTACG
66 CATTATACCTCTCCGACCGA-CTCAACGCCCGCAAGCTCATTTCACGGATTGACTTAGGCATACA
17984988 GAGTTCAT
130 GAGTTCAT
17984996 CCTCGGTCTA
Statistics
Matches: 110, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
170 1 0.01
171 109 0.99
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (171 bp):
GGCAGCAGGACCAGTAGCAGGATCAACAGCACGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCG
CATTATACCTCTCCGACCGACTCAACGCCCGCAAGCTCATTTCACGGATTGACTTAGGCATACAG
AGTTCATTCCATATCTAAGCCCCAGCTAGACCGGGGGTTAT
Found at i:17985175 original size:26 final size:26
Alignment explanation
Indices: 17985139--17985191 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17985129 GTTGGCTTAG
17985139 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
17985165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17985191 G
1 G
17985192 ATTTTGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17985898 original size:26 final size:26
Alignment explanation
Indices: 17985862--17985914 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17985852 GTTGACTTAG
17985862 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
17985888 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
17985914 G
1 G
17985915 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:17986082 original size:26 final size:26
Alignment explanation
Indices: 17986046--17986098 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986036 GTTGGCTTAG
*
17986046 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17986072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17986098 G
1 G
17986099 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17986831 original size:26 final size:26
Alignment explanation
Indices: 17986801--17986853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986791 GTTGACTTTG
17986801 GCATACCG-AGTTCATCCCCAGTCTAA
1 GCATA-CGAAGTTCATCCCCAGTCTAA
*
17986827 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
17986853 G
1 G
17986854 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:17987995 original size:160 final size:159
Alignment explanation
Indices: 17987493--17988026 Score: 609
Period size: 157 Copynumber: 3.4 Consensus size: 159
17987483 CGTGAGTTGG
* * ** * * *
17987493 CTTAGGCATACATAGTTGATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTATGGCAGCGGGA
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCGGGA
17987557 CCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCT
65 CCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCT
*
17987622 CAGCGCCTGCAGGCTCCTTTCGTGCATTCA
130 CAGCGCTTGCAGGCTCCTTTCGTGCATTCA
* * * *
17987652 CTTATGC--ACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCGGGAC
** * * ** * * *
17987715 CGACAGCATACAG-GGGGGATCGGGTCGATTCCCGGTTGTGCAT-T-CTGCCTCTCCGGTC-GAC
66 CGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACT-TGCATATGATGCCTCTTCGGCCAG-C
* ** * * ** **
17987776 TGAGCGCTCACACGCTCGTTTCGTGGGTTGG
129 TCAGCGCTTGCAGGCTCCTTTCGTGCATTCA
** * * *
17987807 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAG-TCGGACTGAGGGTTGTGGCAGCGGGA
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAGAT-CAGATCAGACCGAGGGTTGTGGCAGCGGGA
17987871 CCGGAC-GCCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAG
65 CC-GACAG-CACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAG
17987935 CTCAGCGCTTGCAGGCTCCTTTCGTGCATTCA
128 CTCAGCGCTTGCAGGCTCCTTTCGTGCATTCA
* * *
17987967 CTTATGCATACAGAGTTCATTCCATGTCTAAGATCGGATCAGACTGAGGGTTGTGGCAGC
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGC
17988027 AAGATCGATA
Statistics
Matches: 299, Mismatches: 63, Indels: 25
0.77 0.16 0.06
Matches are distributed among these distances:
154 1 0.00
155 39 0.13
156 24 0.08
157 105 0.35
158 15 0.05
159 29 0.10
160 85 0.28
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCGGGAC
CGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTC
AGCGCTTGCAGGCTCCTTTCGTGCATTCA
Found at i:17988083 original size:317 final size:314
Alignment explanation
Indices: 17987389--17988156 Score: 1170
Period size: 317 Copynumber: 2.4 Consensus size: 314
17987379 AGCAGGACCA
* * * *
17987389 GCAGCAGGATCGACAGCGTGCAAGGGGGGACCGGAC-CGA-TCCTCGGCTTGTGCATTCTGCCTC
1 GCAGCAAGATCGACAGCATAC-AGGGGGGATCGG-CTCGATTCC-CGG-TTGTGCATTCTGCCTC
* * * * * * * ** *
17987452 TTCGATC-AGCTGAGCACCCGCACACTTGTTTCGTGAGTTGGCTTAGGCATACATAGTTGATTCC
62 TCCGGTCGA-CTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
17987516 ATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGATCG
126 ATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGATCG
17987581 GGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTCAGCGCCTGCAGGCTCCTTTCGTG
191 GGTCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTCAGCGCCTGCAGGCTCCTTTCGTG
17987646 CATTCACTTATGCACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTG
256 CATTCACTTATGCACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTG
* *
17987705 GCAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATTCCCGGTTGTGCATTCTGCCTCTCCG
1 GCAGCAAGATCGACAGCATACAGGGGGGATCGGCTCGATTCCCGGTTGTGCATTCTGCCTCTCCG
* *
17987770 GTCGACTGAGCGCTCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
17987835 TAAGCTCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCGGAC-GCCACGCAGAGAGGGATCGGG
131 TAAGCCCCAGCT-GGACCGAGGGTTATGGCAGCGGGACC-GACAG-CACGCAGAGAGGGATCGGG
*
17987898 TCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTCAGCGCTTGCAGGCTCCTTTCGTGCA
193 TCGATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTCAGCGCCTGCAGGCTCCTTTCGTGCA
*
17987963 TTCACTTATGCATACAGAGTTCATTCCATGTCTAAGATCGGATCAGACTGAGGGTTGTG
258 TTCACTTATGC--ACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTG
*
17988022 GCAGCAAGATCGATAGCATACAGGGGGGATCGAGCT-GATTCCCGGTTGTGCATTCTGCCTCTCC
1 GCAGCAAGATCGACAGCATACAGGGGGGATCG-GCTCGATTCCCGGTTGTGCATTCTGCCTCTCC
*
17988086 GGTCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 GGTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
17988151 CTAAGC
130 CTAAGC
17988157 ATACGGAGTT
Statistics
Matches: 416, Mismatches: 27, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
313 1 0.00
314 105 0.25
315 115 0.28
316 22 0.05
317 171 0.41
318 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (314 bp):
GCAGCAAGATCGACAGCATACAGGGGGGATCGGCTCGATTCCCGGTTGTGCATTCTGCCTCTCCG
GTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCTGGACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGAGGGATCGGGTCG
ATCCCCGACTTGCATATGATGCCTCTTCGGCCAGCTCAGCGCCTGCAGGCTCCTTTCGTGCATTC
ACTTATGCACAGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTG
Found at i:17988148 original size:157 final size:156
Alignment explanation
Indices: 17987389--17988155 Score: 595
Period size: 157 Copynumber: 4.9 Consensus size: 156
17987379 AGCAGGACCA
* * * **
17987389 GCAGCAGGATCGACAGCGTGCAAGGGGGGACCGGACCGA-TCCTCGGCTTGTGCATTCTGCCTCT
1 GCAGCAGGATCGA-AGCATAC-AGGGGGGATCGGGTCGATTCC-CGG-TTGTGCATTCTGCCTCT
* * * * * * * ** *
17987453 TCGATC-AGCTGAGCACCCGCACACTTGTTTCGTGAGTTGGCTTAGGCATACATAGTTGATTCCA
62 CCGGTCGA-CTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* ** * * * *
17987517 TGTCTAAG-CCCCAGCTGGACCGAGGGTTATG
126 TGTCTAAGATCGGATC-AGACTGAGGGTTGTG
* * ** * * ** *
17987548 GCAGCGGGACCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCGACT-TGCATATGATGCCTCT
1 GCAGCAGGATCGA-AGCATACAG-GGGGGATCGGGTCGATTCCCGGTTGTGCAT-T-CTGCCTCT
* * * * * ** ** * *
17987612 TCGG-CCAGCTCAGCGC-CTGCAGGCTCCTTTCGTGCATTCACTTATGC--ACAGAGTTCATTCC
62 CCGGTCGA-CTGAGCGCTC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
17987673 ATGTCTAAGATCGGATCAGACCGAGGGTTGTG
125 ATGTCTAAGATCGGATCAGACTGAGGGTTGTG
17987705 GCAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATTCCCGGTTGTGCATTCTGCCTCTCCG
1 GCAGCAGGATCGA-AGCATACAGGGGGGATCGGGTCGATTCCCGGTTGTGCATTCTGCCTCTCCG
* *
17987770 GTCGACTGAGCGCTCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
65 GTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
17987835 TAAGCTC-CAGTCGGACTGAGGGTTGTG
130 TAAGATCGGA-TCAGACTGAGGGTTGTG
* * * ** * * ** *
17987862 GCAGCGGGACCGGACGCCACGCAGAGAGGGATCGGGTCGATCCCCGACT-TGCATATGATGCCTC
1 GCAGCAGGATC-GAAG-CATACAG-GGGGGATCGGGTCGATTCCCGGTTGTGCAT-T-CTGCCTC
* * * * * * ** ** * *
17987926 TTCGG-CCAGCTCAGCGCTTGCAGGCTCCTTTCGTGCATTCACTTATGCATACAGAGTTCATTCC
61 TCCGGTCGA-CTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
17987990 ATGTCTAAGATCGGATCAGACTGAGGGTTGTG
125 ATGTCTAAGATCGGATCAGACTGAGGGTTGTG
* *
17988022 GCAGCAAGATCGATAGCATACAGGGGGGATCGAG-CTGATTCCCGGTTGTGCATTCTGCCTCTCC
1 GCAGCAGGATCGA-AGCATACAGGGGGGATCGGGTC-GATTCCCGGTTGTGCATTCTGCCTCTCC
*
17988086 GGTCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
64 GGTCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
17988151 CTAAG
129 CTAAG
17988156 CATACGGAGT
Statistics
Matches: 474, Mismatches: 110, Indels: 50
0.75 0.17 0.08
Matches are distributed among these distances:
155 38 0.08
156 25 0.05
157 175 0.37
158 41 0.09
159 103 0.22
160 91 0.19
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCAGCAGGATCGAAGCATACAGGGGGGATCGGGTCGATTCCCGGTTGTGCATTCTGCCTCTCCGG
TCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGATCGGATCAGACTGAGGGTTGTG
Found at i:17988158 original size:26 final size:26
Alignment explanation
Indices: 17988129--17988181 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17988119 GTTGGCTTAG
17988129 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17988155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17988181 G
1 G
17988182 ATTTTGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17989065 original size:158 final size:159
Alignment explanation
Indices: 17988779--17989162 Score: 438
Period size: 158 Copynumber: 2.4 Consensus size: 159
17988769 ACGCATTCTT
* * * * * ** *
17988779 CCTCTCCAGCTGGCTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGTGTAGGGAGTTCAT
1 CCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *** *
17988844 T-CCATGTCTAAGCCCCAGCCGACCGAGGGTTGTGGCAATGGGATCGGCAGCACACAGCGGGGGA
66 TCCCATATCTAAGACCCAACCGACCGAGGGTTGTGGCAACAAGATCGGCAGCACACAGCAGGGGA
17988908 CCGGGCTGATCCCC-AGCTTGCACATTATG
131 CCGGGCTGATCCCCGA-CTTGCACATTATG
17988937 CCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
17989002 TCCCA-ATCTAAGATCGAATCGAACCGAGGGTTGTGGGAGCAAGATCGGCAGCACACAG-AGGGG
66 TCCCATATCTAAGACCCAACCG-ACCGAGGGTTGTGGCAACAAGATCGGCAGCACACAGCAGGGG
* * * *
17989065 ATCGGGTTGGTCCCCGACTTGCACATTCTG
130 ACCGGGCTGATCCCCGACTTGCACATTATG
* * * *
17989095 CCTCTCCGGTCGG-TTGAGCGCCCGCACGCTC-ATTCTATGGGTTAGCTTAGGCACACGGAGTTC
1 CCTCTCCGGCCGGCTT-AGCGCCCGCACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGGAGTTC
17989158 ATTCC
64 ATTCC
17989163 ATGGATAAGC
Statistics
Matches: 193, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
157 5 0.03
158 153 0.79
159 35 0.18
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCCATATCTAAGACCCAACCGACCGAGGGTTGTGGCAACAAGATCGGCAGCACACAGCAGGGGA
CCGGGCTGATCCCCGACTTGCACATTATG
Found at i:17989660 original size:156 final size:157
Alignment explanation
Indices: 17989472--17989842 Score: 419
Period size: 158 Copynumber: 2.4 Consensus size: 157
17989462 CAACTGAGCG
* *
17989472 CCGCACACCCGTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT-AG-CCAACCA
1 CCGCACACTCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAACCA
** * *
17989535 GACTGAGGGTAGTGGCAGC-GAGATCGGTAGCAAGCAAAGGGGGACCGGGTCGATCCCCGGCTTG
65 GACTGAGGGTAGTGGCAGCAG-GATCGACAGCAAGC-AAGGGGGACCAGGTCGATCCCCGACTTG
17989599 CGCATTATGCCTCTCCGGCCAGCTCAGCAC
128 CGCATTATGCCTCTCCGGCCAGCTCAGCAC
* **
17989629 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTGACC
1 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGA-CCAACC
* * * * *
17989693 GGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGGACCAGGTCGGTCCCCGACTTGC
64 AGACTGAGGGTAGTGGCAGCAGGATCGACAGCAAGCAAGGGGGACCAGGTCGATCCCCGACTTGC
* * * * **
17989758 GCATTCTGCCTCTCCGGTCGGCTGAGTGC
129 GCATTATGCCTCTCCGGCCAGCTCAGCAC
* * ** * *
17989787 CCGCACGCTCG-TTCTGTGGGTTGGCTTAAGCACCCAGAGTTCATTCCATGTATAAG
1 CCGCACACTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
17989843 GATACGGAGT
Statistics
Matches: 180, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
156 36 0.20
157 21 0.12
158 89 0.49
159 33 0.18
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAACCAG
ACTGAGGGTAGTGGCAGCAGGATCGACAGCAAGCAAGGGGGACCAGGTCGATCCCCGACTTGCGC
ATTATGCCTCTCCGGCCAGCTCAGCAC
Found at i:17990102 original size:197 final size:197
Alignment explanation
Indices: 17989746--17990267 Score: 505
Period size: 197 Copynumber: 2.6 Consensus size: 197
17989736 ACCAGGTCGG
* * ** * ** * *
17989746 TCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTC-GTTCTGTGGGTTG
1 TCCCCGACTTACACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTC-ATGGGTTG
* * * * * *
17989810 GCTTAAGCACCCAGAGTTCATTCCATGTATAAGGATACGGAGTTCATTCCCAGTCTAAGATTGGA
65 GCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATTGGA
* * * *
17989875 CTGGACCGAGGGTTACGGGAGTGAGACCAGCACCAGGATCGGTAGCACACAGGGAGGGATCGGGC
130 CCGGACCGAGGGTTACAGGAATGAGACCAGCACCAGGATCGGTAGCACACAGAGAGGGATCGGGC
17989940 CAA
195 CAA
* * * ** * * *
17989943 TCCCCGGCTTACGCATTCTGCCTCTCTGACCGGTTGAGCACTCGCATGCTCATTTTATGGGTTGG
1 TCCCCGACTTACACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGG
* * *
17990008 CTTAGGCAGACGGAGTTCATTCCGTGTCTAAGCATACGGAGTTCATTCCTAGTCTAAAATCAT-G
66 CTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAAT--TGG
* ** * * * *
17990072 -CCGGACTGAGGGTTGTAGTAAT-AGGACCAGCAGCAGGATCGGTAGCACGCAGAGAGTGATCGG
129 ACCGGACCGAGGGTTACAGGAATGA-GACCAGCACCAGGATCGGTAGCACACAGAGAGGGATCGG
* *
17990135 GTCGA
193 GCCAA
* * * * * *
17990140 TCCTCGACTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
1 TCCCCGACTTACACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGG
* * * ** *
17990205 CTTAGGCATACGGAGTTCATCCCCA-GTCTAACCATACAAAGTTCATTCCCAGTCTAAGATTGG
66 CTTAGGCACACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATTGG
17990268 TCTAGACCGA
Statistics
Matches: 262, Mismatches: 57, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
195 1 0.00
196 2 0.01
197 253 0.97
198 5 0.02
199 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
TCCCCGACTTACACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGG
CTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATTGGAC
CGGACCGAGGGTTACAGGAATGAGACCAGCACCAGGATCGGTAGCACACAGAGAGGGATCGGGCC
AA
Found at i:17990582 original size:26 final size:26
Alignment explanation
Indices: 17990552--17990604 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
17990542 GTTGGCTTAG
17990552 GCATAC-GAAGTTCATTCC-ATGTCTAA
1 GCATACAG-AGTTCATTCCTA-GTCTAA
17990578 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17990604 G
1 G
17990605 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17990926 original size:26 final size:26
Alignment explanation
Indices: 17990897--17990949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17990887 GTTGACTTAG
*
17990897 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
17990923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
17990949 G
1 G
17990950 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:17991056 original size:183 final size:184
Alignment explanation
Indices: 17990794--17991134 Score: 492
Period size: 183 Copynumber: 1.9 Consensus size: 184
17990784 ACCAACAGTG
* *
17990794 GGATCGACAGCACGTAGAGGGGGACCGGGCTAATCCACGGCTTGCGTATTATGCCTCTCCGGCCG
1 GGATCGACAGCACGTAGAGAGGGACCGGGCTAATCCACGGCTTGCGCATTATGCCTCTCCGGCCG
* * * * *
17990859 GATGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATATGGAGTTTATCCCCA-GTCTAA
66 GATGAGCCCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
*
17990923 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGCAGCA
130 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGCAGCA
* * * * *
17990978 GGATCGACAGCACGTA-AGAGGGACTGGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC
1 GGATCGACAGCACGTAGAGAGGGACCGGGCT-AATCCACGGCTTGCGCATTATGCCTCTCCGGCC
* *
17991041 -GACTGAGCCCCCGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GGA-TGAGCCCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTA
17991105 AGCATACGGAGTTCATTCCCAGTCTAAGAT
129 AGCATACGGAGTTCATTCCCAGTCTAAGAT
17991135 TTTGAGCCAC
Statistics
Matches: 139, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
182 6 0.04
183 117 0.84
184 16 0.12
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GGATCGACAGCACGTAGAGAGGGACCGGGCTAATCCACGGCTTGCGCATTATGCCTCTCCGGCCG
GATGAGCCCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGCAGCA
Found at i:17991109 original size:26 final size:26
Alignment explanation
Indices: 17991080--17991132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17991070 GTTGGCTTAG
17991080 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
17991106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17991132 G
1 G
17991133 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17992030 original size:26 final size:26
Alignment explanation
Indices: 17991993--17992045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17991983 GTTAGCTTGG
17991993 GCATATGCAGTTCATT-CCATGTCTAA
1 GCATATGCAGTTCATTCCCA-GTCTAA
*
17992019 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATATGCAGTTCATTCCCAGTCTAA
17992045 G
1 G
17992046 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATATGCAGTTCATTCCCAGTCTAA
Found at i:17993226 original size:158 final size:158
Alignment explanation
Indices: 17992750--17993250 Score: 539
Period size: 157 Copynumber: 3.2 Consensus size: 158
17992740 CCTAGTCCAA
* * * * * * *
17992750 GCATATAGAG-TCATCCCACCGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAAGATTGGT
1 GCATATAGAGTTCATTCCA-CGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
17992814 AGCACACAGGGGGGATCGGGCCAATCCTCGGCTTGCGCA-TTCTACCTCTCCGGTTGACTGAGCG
65 AGCACACAGGGGGGATCGGGCCAATCCACGGCTTGCGCATTTC-GCCTCTCCGGTCGGCTGAGCG
* *
17992878 CCCACACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * ** * * *
17992908 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATATAGAGTTCATTCCACGTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
** * * * *
17992972 AGCATGCAGAGGGGA-CTGGG-CAATCCCCGGCTTGCGCATTAT-GCCTCTTCGGTCGGCTTAGC
65 AGCACACAGGGGGGATC-GGGCCAATCCACGGCTTGCGCATT-TCGCCTCTCCGGTCGGCTGAGC
** **
17993034 GCCCGCACGCTCGTTTCATTAGTTAACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
17993065 GCATATAGAGTTCATTCC-CAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGAC
1 GCATATAGAGTTCATTCCAC-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* *
17993129 AGCACACAGGGGGGATCGGGCCGATCCACGGCTTGCGCATTTCGCCTCTCCGGTCGGCTGAGTGC
65 AGCACACAGGGGGGATCGGGCCAATCCACGGCTTGCGCATTTCGCCTCTCCGGTCGGCTGAGCGC
*
17993194 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** *
17993223 GCATGCAGGAGTTCATTCCATGTCTAAG
1 GCATATA-GAGTTCATTCCACGTCTAAG
17993251 CATACGGAGT
Statistics
Matches: 275, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 124 0.45
158 121 0.44
159 28 0.10
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATATAGAGTTCATTCCACGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACACAGGGGGGATCGGGCCAATCCACGGCTTGCGCATTTCGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:17993260 original size:26 final size:25
Alignment explanation
Indices: 17993230--17993283 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 25
17993220 TAGGCATGCA
17993230 GGAGTTCATTCCATGTCTAAGCATAC
1 GGAGTTCATTCCATGTCTAAGCAT-C
17993256 GGAGTTCATTCCATGTCTAAGCATC
1 GGAGTTCATTCCATGTCTAAGCATC
17993281 GGA
1 GGA
17993284 CCAGACCGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
GGAGTTCATTCCATGTCTAAGCATC
Found at i:17993385 original size:186 final size:184
Alignment explanation
Indices: 17993072--17993436 Score: 520
Period size: 186 Copynumber: 2.0 Consensus size: 184
17993062 TAGGCATATA
* *
17993072 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCCGCAACAGGATCGACAGCACACA
* ** * *
17993137 GGGGGGATCGGGCCGATCCACGGCTTGCGCATTTCGCCTCTCCGGTCGGCTGAGTGCCCGCACGC
66 GGGGGAATCGGGCCGATCCACAACTTGCGCATTTCGCCTCTCCGATCGGCTGAGTGCCCGCACAC
* *
17993202 TCGTTTCGTGGGTTGGCTTAGGCAT-GCAGGAGTTCATTCCATGTCTAAGCATACG
131 CCATTTCGTGGGTTGGCTTAGGCATAG--GGAGTTCATTCCATGTCTAAGCATACG
* * **
17993257 GAGTTCATT-CCATGTCTAAGCATCGGACCAGACCGAGGGTTGCCGCAACAGGATCGACAGCATG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGCCGCAACAGGATCGACAGCACA
* *
17993321 CAGGGGGAATCGGGCCGATCC-CTAACTTGCGTATTTTGCCTCTCCGATCGGCTGAGTGCCCGCA
64 CAGGGGGAATCGGGCCGATCCAC-AACTTGCGCATTTCGCCTCTCCGATCGGCTGAGTGCCCGCA
*
17993385 CACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
17993437 CCCATCGAAA
Statistics
Matches: 160, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
184 3 0.02
185 39 0.24
186 117 0.73
187 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCCGCAACAGGATCGACAGCACACA
GGGGGAATCGGGCCGATCCACAACTTGCGCATTTCGCCTCTCCGATCGGCTGAGTGCCCGCACAC
CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACG
Found at i:17994483 original size:26 final size:26
Alignment explanation
Indices: 17994447--17994499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17994437 GTTAACTTAG
*
17994447 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
17994473 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17994499 G
1 G
17994500 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18000470 original size:26 final size:26
Alignment explanation
Indices: 18000421--18000471 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18000411 TTGGCTTAGG
*
18000421 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATATCTAAC
*
18000447 CATATGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
18000472 GATCGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAC
Found at i:18000826 original size:184 final size:184
Alignment explanation
Indices: 18000263--18000827 Score: 599
Period size: 196 Copynumber: 3.0 Consensus size: 184
18000253 GTTAACTTAG
* * * *
18000263 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCACCGAGGGTTGTGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATTGGCA
*
18000328 GCACG-AGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTC-CGATCGGCTG-ACTG
66 GCACGCAGGGGGGACCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCTCGATCGGCTGAAC-G
*
18000390 CCTGCACGCTCAT-TTT-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCGCACGC-C-TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
18000446 CCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT---GC-----GAC-AGC-
* * * * *
18000511 ATAGGATTGGTAGCACGCAGGGGGGGCCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCT-TCGA
56 --AGGATTGGCAGCACGCAGGGGGGACC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCTCGA
* * * * * *
18000575 TCGGCTGAGCGCCCGCAC-ACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GT
118 TCGGCTGAACGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
18000638 CTAA
181 CTAA
* **
18000642 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATTGGCA
* * * * * *
18000707 GCATGCAAGGGGGACCAGGCCGATGCCCGACTTGCGTATTCTGCCTCTCTAG-CCGGCTGAACGC
66 GCACGCAGGGGGGACC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCTCGATCGGCTGAACGC
*
18000771 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
18000826 GC
1 GC
18000828 CCCAGCCAGA
Statistics
Matches: 311, Mismatches: 48, Indels: 45
0.77 0.12 0.11
Matches are distributed among these distances:
183 43 0.14
184 103 0.33
185 4 0.01
186 1 0.00
187 3 0.01
188 3 0.01
191 3 0.01
192 3 0.01
193 3 0.01
194 1 0.00
195 16 0.05
196 123 0.40
197 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATTGGCA
GCACGCAGGGGGGACCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTCGATCGGCTGAACGCC
CGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18001167 original size:26 final size:26
Alignment explanation
Indices: 18001117--18001169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18001107 GTTGGCTTAG
*
18001117 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18001143 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18001169 G
1 G
18001170 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18001271 original size:11 final size:11
Alignment explanation
Indices: 18001239--18001264 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
18001229 CCTGAGGCAC
18001239 CATCACCGGAG
1 CATCACCGGAG
18001250 CATCACCGGAG
1 CATCACCGGAG
18001261 CATC
1 CATC
18001265 GTCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:18002234 original size:159 final size:157
Alignment explanation
Indices: 18001782--18002341 Score: 472
Period size: 158 Copynumber: 3.5 Consensus size: 157
18001772 GTTCGATTCT
* ** * * *
18001782 CGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCCGCACGCTTGTTTCATGGGTTGACTT
1 CGACTTACGCATTATGCCTCTCCGGTCGGCTGAGC-TCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * *
18001847 GGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGA-TCGAAGGTTGTGATAGTAGGATCG
65 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGAG-TAGTAGGATCG
* * **
18001911 ACAGTACGCA-AGGTGGACCGGGCTAATCCC
128 ACAGCACGCAGAGGGGGACC-GGCCGATCCC
* ** * * * *
18001941 C-AGCTTACGCATTCTGCCTCTCCGACCGACTGAGCTCCCGAACGCCCGTTTCGTGGGTTGGCTT
1 CGA-CTTACGCATTATGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTT
* ** * * * * *
18002005 AGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGA-ACTGAGGGTTGTGGCAGCT-GGAC
65 AGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTG-AGTAG-TAGGAT
* *
18002067 CGATAGCACGCAGAGGGGGACCGAGTCGATCCC
126 CGACAGCACGCAGAGGGGGACCG-GCCGATCCC
* * * * * *
18002100 CGACTTATGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACCTA
1 CGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
18002165 GGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGTAGGATCGAC
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-AGTAGTAGGATCGAC
18002230 AGCACGCAG-GGGGGACCGGGCCGATCCC
130 AGCACGCAGAGGGGGACC-GGCCGATCCC
** * * * * * * * *
18002258 CGAC-TGGGTCATTCTACCTCTCCGGTTGGCTGA-ATGCCTGCACGCTCGTTTCATAGGTTGCCT
1 CGACTTACG-CATTATGCCTCTCCGGTCGGCTGAGCT-CCCGCACGCTCGTTTCGTGGGTTGACT
18002321 TAGGCATACGGAGTTCATTCC
64 TAGGCATACGGAGTTCATTCC
18002342 ATGGCTAAGC
Statistics
Matches: 314, Mismatches: 72, Indels: 31
0.75 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 157 0.50
159 149 0.47
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CGACTTACGCATTATGCCTCTCCGGTCGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGAGTAGTAGGATCGACA
GCACGCAGAGGGGGACCGGCCGATCCC
Found at i:18002415 original size:12 final size:12
Alignment explanation
Indices: 18002398--18002429 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18002388 CCGAGGGTTG
18002398 CGACAGCAGGAC
1 CGACAGCAGGAC
*
18002410 CGACAGCAGGAT
1 CGACAGCAGGAC
18002422 CGACAGCA
1 CGACAGCA
18002430 CGCAGAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.31, G:0.31, T:0.03
Consensus pattern (12 bp):
CGACAGCAGGAC
Found at i:18002731 original size:171 final size:169
Alignment explanation
Indices: 18002386--18004206 Score: 900
Period size: 171 Copynumber: 10.9 Consensus size: 169
18002376 GATCGAACCA
* * *
18002386 GACCGAGGGTTGCGACAGCAGGACCGACAGCAGGATCGACAGCACGCAGA-GGGGAACGGGCCGA
1 GACCGAGGGTTGTGACAGCAGGA-CG-CTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGA
* * ** * * ** * *
18002450 TCCCCAATTTGCCCATTCTACCTTTTCGATCGGCTGAGTGCCTGCACACTCATTTTATGGGTTGG
64 TCCCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGG
* *
18002515 CTTAGGCATATGGAGTTGATTCCATGTCTAAGCC-CTAGCCG
129 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAC-AGCCG
* * * *
18002556 GACCGAGGGTTGTGACAGCAGGACCGACTGCGGGATCGACAGCACGTAGAGGGGGGCCGGGTCGA
1 GACCGAGGGTTGTGACAGCAGGA-CG-CTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGA
* * * * * * *
18002621 TCCCTGGCTTGTGCATTCTGTCTCTTCGGA-CGGTTGAGCACCCACACGCTCATTTTGTGCGTTG
64 TCCCCGACTTGTGCATTCTGCCTCTTC-GATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTG
* *
18002685 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCACAGTCG
128 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCCG
* * * * * * *
18002727 GACCGAGGGTTGTGGCAGCAAGATCGGTAGCGGGATC-AGCAGCACACAGAGGGGGATCGGGCTG
1 GACCGAGGGTTGTGACAGCAGGA-CGCT-GCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCG
* * * * * * **
18002791 ATCCTCGACTT-TCGCAATAC-GCCTCTTCGATCGGCTAAGCAACCGTACGCTCATTTCATGCAT
63 ATCCCCGACTTGT-GC-ATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGT
* * * * *
18002854 TGACTTAGGGATACGAAGTTCATTCC-TAGTCTAAG--ATCGAACCA
126 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCA-C-AGCCG
* **
18002898 GACCGAGGG-T-TG-C-G--GTA-G-T--AGGATCGGTAGCACGCAG-GGGGGACCGGGCCGATC
1 GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
* ** * * * * * * **
18002952 CACGACTTGCACATTCTGCCTCTTCGATCTGTTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCT
66 CCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCT
* * **
18003017 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAG
131 TAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCCG
* * * * * *
18003056 AACTGAGGGTTGTG---GC---A-GCT---GGACCGATAGCACGTAGAGGGGGACCGAGCCGATC
1 GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
* * * * * * * *
18003111 CCCGACTTATGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACC
66 CCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCT
* * *
18003176 TAGGCATACGGAGTTTATTCCCA-GTCTAAG--ATCGGACCA
131 TAGGCATACGGAGTTCATT-CCATGTCTAAGCCA-CAG-CCG
* *
18003215 GACTGAGGG-T-T----GCAGTA-G-T--AGGATCGACAGCACGCAG-GGGGGACCGGGCCGATC
1 GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
* * * * * *** * * * * *
18003269 CCCGAC-TGGGTCATTCTACCTCTCCGGTTGGCTGAATGCCTGCACGCTCGTTTCATAGGTTGCC
66 CCCGACTTGTG-CATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGC
* * *
18003333 TTAGGCATACGGAGTTCATTCCATGGCTAAGCATACAG-AG
130 TTAGGCATACGGAGTTCATTCCATGTCTAAGC-CACAGCCG
* * ** * * * *
18003373 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGACCGACAGCAGGATCGA
1 --GA--CCGAGGGT-TG-T-G-A-CAG--C-A-GG--ACG-CTGCAGGATCG--A-CA-G--C-A
* * * *
18003438 CAGCACGCAGAGGGGACCGGGCCGATCCCCAATTTGCT-CATTCTGCCTTTTCGATCGGCTGAGT
43 C-GCA-G-AG-GGGGACCGGGCCGATCCCCGACTTG-TGCATTCTGCCTCTTCGATCGGCTGAGC
* * * * *
18003502 GCCTGCACACTCATTTTATGGGTTGGCTTAGGCATATGGAGTTGATTCCATGTCTAAGCC-CTAG
103 ACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCAC-AG
18003566 CCG
167 CCG
* * * *
18003569 GACCGAGGGTTGTGACAGCAGGACCGACTGCGGGATCGACAGCACGTAGAGGGGGGCCGGGTCGA
1 GACCGAGGGTTGTGACAGCAGGA-CG-CTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGA
* * * * * * *
18003634 TCCCTGGCTTGTGCATTCTGTCTCTTCGGA-CGGTTGAGCACCCACACGCTCATTTTGTGCGTTG
64 TCCCCGACTTGTGCATTCTGCCTCTTC-GATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTG
* *
18003698 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCACAGTCG
128 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCCG
* * * * * * *
18003740 GACCGAGGGTTGTGGCAGCAAGATCGGTAGCGGGATC-AGCAGCACACAGAGGGGGATCGGGCTG
1 GACCGAGGGTTGTGACAGCAGGA-CGCT-GCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCG
* * * * * * **
18003804 ATCCTCGACTT-TCGCAATAC-GCCTCTTCGATCGGCTAAGCAACCGTACGCTCATTTCATGCAT
63 ATCCCCGACTTGT-GC-ATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGT
* * * * *
18003867 TGACTTAGGGATACGAAGTTCATTCC-TAGTCTAAG--ATCGAACCA
126 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCA-C-AGCCG
* **
18003911 GACCGAGGG-T-TG-C-G--GTA-G-T--AGGATCGGTAGCACGCAG-GGGGGACCGGGCCGATC
1 GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
* ** * * * * **
18003965 CACGACTTGCACATTCTGCCTCTTCGATCTGTTGA--ACGCCGCACGCCCGTTTCGTGGGTTGGC
66 CCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCAC-CCGCACGCTCATTTTATGGGTTGGC
* * * *
18004028 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
130 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCCG
* * * *
18004068 GACCGAGGGTTGTG---GC---A----GCAGGATTGGCAGCACGCAGAGGGGGACCGGGCCAATG
1 GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
* * * * ** * * * * *
18004123 CCCGGCTTGCGCATTATGCCTCTTCGGTAAGCTCAGCGCTCGCACGCTCATTTCATGGGTTGACT
66 CCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCT
**
18004188 TTTGCATACGGAGTTCATT
131 TAGGCATACGGAGTTCATT
18004207 NNNNNNNNNN
Statistics
Matches: 1261, Mismatches: 287, Indels: 217
0.71 0.16 0.12
Matches are distributed among these distances:
156 3 0.00
157 85 0.07
158 280 0.22
159 182 0.14
160 9 0.01
161 1 0.00
162 5 0.00
163 2 0.00
165 2 0.00
166 1 0.00
167 2 0.00
168 2 0.00
169 6 0.00
170 63 0.05
171 446 0.35
172 14 0.01
173 2 0.00
174 2 0.00
175 3 0.00
176 2 0.00
177 1 0.00
178 1 0.00
179 2 0.00
180 2 0.00
182 11 0.01
183 2 0.00
184 7 0.01
185 1 0.00
186 1 0.00
187 5 0.00
188 2 0.00
189 1 0.00
190 2 0.00
191 3 0.00
192 8 0.01
193 1 0.00
194 2 0.00
195 3 0.00
196 92 0.07
197 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (169 bp):
GACCGAGGGTTGTGACAGCAGGACGCTGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATC
CCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCCG
Found at i:18003065 original size:158 final size:157
Alignment explanation
Indices: 18002853--18003364 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 157
18002843 ATTTCATGCA
* * * ** *
18002853 TTGACTTAGGGATACGAAGTTCATTCC-TAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGT
1 TTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCACCAGACTGAGGGTTGCGGTAGT
* * * *
18002917 AGGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCACGACTTGCACATTCTGCCTCTTCGATCT
64 AGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCT
* *
18002982 GTTGAACGCCCGCACGCCCGTTTCGTGGG
129 GCTGAACGCCCGCACGCTCGTTTCGTGGG
* * ** * *
18003011 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACTGAGGGTTGTGGCAGCT
1 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCAG-ACTGAGGGTTGCGGTAG-T
* * * *** *
18003076 -GGACCGATAGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTATGCATTATGCCTCTCCGGTC
64 AGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTC
* * * * * *
18003140 GGCTCAGCACCCGCACGCTCATTTTGTGGG
128 TGCTGAACGCCCGCACGCTCGTTTCGTGGG
* * * ** *
18003170 TTGACCTAGGCATACGGAGTTTATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGT
1 TTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCACCAGACTGAGGGTTGCGGTAGT
* * ** *
18003234 AGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTGGGTCATTCTACCTCTCCGGT-T
64 AGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCT
* * * *
18003298 GGCTGAATGCCTGCACGCTCGTTTCATAGG
129 -GCTGAACGCCCGCACGCTCGTTTCGTGGG
* *
18003328 TTGCCTTAGGCATACGGAGTTCATTCCATGGCTAAGC
1 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18003365 ATACAGAGTT
Statistics
Matches: 277, Mismatches: 68, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 7 0.03
158 145 0.52
159 118 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACCAGACTGAGGGTTGCGGTAGTAG
GATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCTGC
TGAACGCCCGCACGCTCGTTTCGTGGG
Found at i:18003249 original size:317 final size:315
Alignment explanation
Indices: 18002588--18004206 Score: 1128
Period size: 317 Copynumber: 4.9 Consensus size: 315
18002578 ACCGACTGCG
* * * * ** *
18002588 GGATCGACAGCACGTAGAGGGGGGCCGGGTCGATCCCTGGCTTGTGCATTCTGTCTCTTCGGA-C
1 GGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCC-GACTTGCACATTCTGCCTCTTC-GATC
* * * * * * * *
18002652 GGTTGAGCACCCACACGCTCATTTTGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
63 TGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
18002717 GCCACAGTCGGACCGAGGGTTGTGGCAGCAAGATCGGTAGCGGGATCAGCAGCACACAGAGGGGG
128 GCCCCAGTAGAACCGAGGGTTGTGGCAGC----T-GG-A-C-CGAT----AGCACGCAGAGGGGG
* * * * * * *
18002782 ATCGGGCTGATCCTCGACTTTCGCAATACGCCTCTTCGATCGGCTAAGCAACCGTACGCTCATTT
181 ACCGGGCCGATCCCCGACTTT-GCATTATGCCTCTTCGATCGGCTAAGCACCCGCACGCTCATTT
** * * * *
18002847 CATGCATTGACTTAGGGATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCG
245 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCA
18002912 GTAGTA
310 GTAGTA
**
18002918 GGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCACGACTTGCACATTCTGCCTCTTCGATCTG
1 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCC-CGACTTGCACATTCTGCCTCTTCGATCTG
* *
18002983 TTGAACGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 TTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
18003048 CCCAGTAGAACTGAGGGTTGTGGCAGCTGGACCGATAGCACGTAGAGGGGGACCGAGCCGATCCC
130 CCCAGTAGAACCGAGGGTTGTGGCAGCTGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCC
* * * ** *
18003113 CGACTTATGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACCTA
195 CGACTT-TGCATTATGCCTCTTCGATCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTA
* * *
18003178 GGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGTA
259 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGTAGTA
* ** * * *
18003235 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTGGGTCATTCTACCTCTCCGGT-TG
1 GGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CCCGACTTGCACATTCTGCCTCTTCGATCT-
* * * * * *
18003299 GCTGAATGCCTGCACGCTCGTTTCATAGGTTGCCTTAGGCATACGGAGTTCATTCCATGGCTAAG
64 GTTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-G-T---
* * *
18003364 CATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGACCGACAG
124 C-T--A-AG--C---CCCAG--T---A--GAACC-GA--G--GGTTGTGGCAGCTGGACCG--A-
* * * *
18003429 CAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCC-AATTTGCTCATTCTGCCTTTTCGAT
165 TA-G--C-AC-GCA-G-AG-GGGGACCGGGCCGATCCCCGACTTTG--CATTATGCCTCTTCGAT
* ** * * * * * *
18003493 CGGCTGAGTGCCTGCACACTCATTTTATGGGTTGGCTTAGGCATATGGAGTTGATT-CCATGTCT
220 CGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
** * * * * *
18003557 AAGCCCTAGCCGGACCGAGGGTTGTGACAGCAGGACCGACTGCG
284 AAGATCGAACCAGACCGAGGG-T-T----GCAGTA--G--T--A
* * * * ** *
18003601 GGATCGACAGCACGTAGAGGGGGGCCGGGTCGATCCCTGGCTTGTGCATTCTGTCTCTTCGGA-C
1 GGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCC-GACTTGCACATTCTGCCTCTTC-GATC
* * * * * * * *
18003665 GGTTGAGCACCCACACGCTCATTTTGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
63 TGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
18003730 GCCACAGTCGGACCGAGGGTTGTGGCAGCAAGATCGGTAGCGGGATCAGCAGCACACAGAGGGGG
128 GCCCCAGTAGAACCGAGGGTTGTGGCAGC----T-GG-A-C-CGAT----AGCACGCAGAGGGGG
* * * * * * *
18003795 ATCGGGCTGATCCTCGACTTTCGCAATACGCCTCTTCGATCGGCTAAGCAACCGTACGCTCATTT
181 ACCGGGCCGATCCCCGACTTT-GCATTATGCCTCTTCGATCGGCTAAGCACCCGCACGCTCATTT
** * * * *
18003860 CATGCATTGACTTAGGGATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCG
245 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCA
18003925 GTAGTA
310 GTAGTA
**
18003931 GGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCACGACTTGCACATTCTGCCTCTTCGATCTG
1 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCC-CGACTTGCACATTCTGCCTCTTCGATCTG
* *
18003996 TTGAACG-CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 TTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* ** ** * *
18004060 CCCAGTCAG-ACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCGGGCCAATGC
130 CCCAGT-AGAACCGAGGGTTGTGGCAGCTGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCC
* * * ** * * *
18004124 CCGGCTTGCGCATTATGCCTCTTCGGTAAGCTCAGCGCTCGCACGCTCATTTCATGGGTTGACTT
194 CCGACTT-TGCATTATGCCTCTTCGATCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTT
**
18004189 TTGCATACGGAGTTCATT
258 AGGCATACGGAGTTCATT
18004207 NNNNNNNNNN
Statistics
Matches: 997, Mismatches: 212, Indels: 174
0.72 0.15 0.13
Matches are distributed among these distances:
316 87 0.09
317 225 0.23
318 4 0.00
319 1 0.00
320 1 0.00
321 3 0.00
322 3 0.00
323 4 0.00
324 2 0.00
325 2 0.00
326 2 0.00
328 78 0.08
329 157 0.16
330 30 0.03
331 5 0.01
332 1 0.00
333 1 0.00
334 1 0.00
336 5 0.01
338 4 0.00
339 2 0.00
340 1 0.00
341 12 0.01
342 90 0.09
343 25 0.03
344 2 0.00
345 5 0.01
346 9 0.01
347 4 0.00
348 1 0.00
349 3 0.00
350 3 0.00
351 3 0.00
352 3 0.00
353 12 0.01
354 95 0.10
355 1 0.00
356 2 0.00
358 2 0.00
359 1 0.00
360 5 0.01
361 1 0.00
362 2 0.00
364 1 0.00
365 1 0.00
366 20 0.02
367 74 0.07
368 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (315 bp):
GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCGACTTGCACATTCTGCCTCTTCGATCTGT
TGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTAGAACCGAGGGTTGTGGCAGCTGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCC
GACTTTGCATTATGCCTCTTCGATCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGTAGTA
Found at i:18003428 original size:12 final size:12
Alignment explanation
Indices: 18003411--18003442 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18003401 CCGAGGGTTG
18003411 CGACAGCAGGAC
1 CGACAGCAGGAC
*
18003423 CGACAGCAGGAT
1 CGACAGCAGGAC
18003435 CGACAGCA
1 CGACAGCA
18003443 CGCAGAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.31, G:0.31, T:0.03
Consensus pattern (12 bp):
CGACAGCAGGAC
Found at i:18004206 original size:159 final size:157
Alignment explanation
Indices: 18003850--18004206 Score: 385
Period size: 157 Copynumber: 2.3 Consensus size: 157
18003840 AAGCAACCGT
** * * * *
18003850 ACGCTCATTTCATGCATTGACTTAGGGATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGACC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCAACCAGACC
* * * *
18003915 GAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCACGACTTGCACATT
66 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCACGACTTGCACATT
* ** * *
18003980 CTGCCTCTTCGATCTGTTGAACGCCGC
131 ATGCCTCTTCGATAAGCTCAACGCCGC
* * * * * * **
18004007 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGTCAGAC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGACCCAACCAGAC
* * * *
18004071 CGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCGGGCCAATGCC-CGGCTTGCGC
65 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCAAT-CCACGACTTGCAC
* *
18004135 ATTATGCCTCTTCGGTAAGCTCAGCGCTCGC
128 ATTATGCCTCTTCGATAAGCTCAACGC-CGC
**
18004166 ACGCTCATTTCATGGGTTGACTTTTGCATACGGAGTTCATT
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
18004207 NNNNNNNNNN
Statistics
Matches: 160, Mismatches: 36, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.01
157 77 0.48
158 43 0.27
159 39 0.24
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCAACCAGACC
GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCACGACTTGCACATT
ATGCCTCTTCGATAAGCTCAACGCCGC
Done.