Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 128 of 138
Found at i:18005610 original size:157 final size:161
Alignment explanation
Indices: 18005260--18005623 Score: 397
Period size: 159 Copynumber: 2.3 Consensus size: 161
18005250 CCCGTACGCC
* *
18005260 CGTTTCTTGGGTTGGCTTAGGCATA-GAAAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAAGTTCATTCCCATGTCTAAGCCCCAGTCGGACCGAG
* * *
18005323 GGTTGTGACAGCCGGACTGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGTGCATTAT
66 GGTTGCGACAGCCGGACTGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTAT
* * *
18005388 ACCTCTCCAGCTGGCTCAATGCCCGCACACT
131 ACCTCTCCAGATGACTCAACGCCCGCACACT
* * * ** *
18005419 CATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCA-GTTTAAG-ATCGGATCGGACCGA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAAGTTCATTCCCATGTCTAAGCCCCAG-TCGGACCGA
* * * * * *
18005481 GGGTTGCGAGCAGCGGGA-TGACAGCATGTAG-GGGGTATCGAGCCGGTTCCCAGCTTGCGCATT
65 GGGTTGCGA-CAGCCGGACTGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATT
* * * * * **
18005544 CTGCCTCTCC-GATGACTGAGCGCCGGCATGCT
129 ATACCTCTCCAGATGACTCAACGCCCGCACACT
18005576 CGTTTCGTGGGTTGGCTTAGGCATACGGAA-TTCATT-CCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAAGTTCATTCCCATGTCTAAGC
18005624 ATATGGAGTT
Statistics
Matches: 168, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 50 0.30
158 40 0.24
159 65 0.39
160 10 0.06
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (161 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAAGTTCATTCCCATGTCTAAGCCCCAGTCGGACCGAG
GGTTGCGACAGCCGGACTGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTAT
ACCTCTCCAGATGACTCAACGCCCGCACACT
Found at i:18005635 original size:26 final size:26
Alignment explanation
Indices: 18005596--18005648 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18005586 GTTGGCTTAG
18005596 GCATACGGAATTCATTC-CATGTCTAA
1 GCATACGGAATTCATTCACA-GTCTAA
* *
18005622 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAATTCATTCACAGTCTAA
18005648 G
1 G
18005649 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCACAGTCTAA
Found at i:18005869 original size:12 final size:12
Alignment explanation
Indices: 18005839--18005869 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18005829 TCGAGGGTTG
*
18005839 TGGCAGCAGGAC
1 TGGCAGTAGGAC
18005851 TGGCAGTAGGAC
1 TGGCAGTAGGAC
18005863 TGGCAGT
1 TGGCAGT
18005870 GGGATCAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.19, G:0.42, T:0.16
Consensus pattern (12 bp):
TGGCAGTAGGAC
Found at i:18006168 original size:26 final size:26
Alignment explanation
Indices: 18006132--18006184 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18006122 GTTGGCTTAG
18006132 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
18006158 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
18006184 G
1 G
18006185 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:18006718 original size:26 final size:26
Alignment explanation
Indices: 18006682--18006734 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18006672 GGTTGGTTAG
18006682 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18006708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18006734 G
1 G
18006735 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18007639 original size:26 final size:26
Alignment explanation
Indices: 18007601--18007651 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18007591 TTGACTTAGG
*
18007601 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGGAATTCATCCCCAGTCTAAT
* *
18007627 CATACGGAATTCATTCCTAGTCTAA
1 CATACGGAATTCATCCCCAGTCTAA
18007652 GATCGAACAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAATTCATCCCCAGTCTAAT
Found at i:18007952 original size:159 final size:156
Alignment explanation
Indices: 18007660--18007967 Score: 359
Period size: 159 Copynumber: 2.0 Consensus size: 156
18007650 AAGATCGAAC
*
18007660 AGACCGAGGGTTGTGACAGCAGGATTGAAAGCACGTAGGATGGACCGGGCCAATCCCCGACTTGC
1 AGACCGAGGGTTGTGACAGCAGGATTGAAAGCACGTAGGAGGGACCGGGCCAATCCCCGACTTGC
*** * *
18007725 ACATTCTGCCTCTGACCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTCGCATACGCGTAGGCA
66 ACATTCTGCCTCTGACCAACTGAGCGCCCGCACACCCGTTTCGTGGGTTCGCATACGCATAGGCA
18007790 GTTCATTCCATGTCTAAGCCCCAGCT
131 GTTCATTCCATGTCTAAGCCCCAGCT
** * ** * * **
18007816 AGACCGAGGGTTGTGGTAGTAGGATTGGCAGCATGTAGAGAGGGACTGGGCTGATCCCCGACTTG
1 AGACCGAGGGTTGTGACAGCAGGATTGAAAGCACGTAG-GAGGGACCGGGCCAATCCCCGACTTG
** * * * * *
18007881 CGTATTCTGCCTCTCCGGCCAACTGAG-GACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA
65 CACATTCTGCCTCT--GACCAACTGAGCG-CCCGCACACCCGTTTCGTGGGTTCGCATACGCATA
18007945 CGG-AGTTCATTCCATGTCTAAGC
127 -GGCAGTTCATTCCATGTCTAAGC
18007968 ATACGGAGTT
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
156 32 0.26
157 34 0.27
158 1 0.01
159 56 0.45
160 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
AGACCGAGGGTTGTGACAGCAGGATTGAAAGCACGTAGGAGGGACCGGGCCAATCCCCGACTTGC
ACATTCTGCCTCTGACCAACTGAGCGCCCGCACACCCGTTTCGTGGGTTCGCATACGCATAGGCA
GTTCATTCCATGTCTAAGCCCCAGCT
Found at i:18007990 original size:26 final size:26
Alignment explanation
Indices: 18007940--18007992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18007930 GTTGGCTTAG
*
18007940 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
18007966 GCATACGGAGTTCATTCCCA-CTCTAA
1 GCATACGGAGTTCATT-CCATCTCTAA
18007992 G
1 G
18007993 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:18009690 original size:344 final size:343
Alignment explanation
Indices: 18009254--18009885 Score: 836
Period size: 344 Copynumber: 1.8 Consensus size: 343
18009244 GAACAACAAC
* * *
18009254 AGGATCGGTAGCATGCAGAGAGGATCAGGTCGATCCCTGGCTTCCGTATTCTGCCTCTCCGATGG
1 AGGATCGGTAGCATGCAGAGAGGACCAGGTCGATCCCTGACTTCCGCATTCTGCCTCTCCGATGG
* * * *
18009319 GCTGAGCACCCGTACGCTCGTTTCGTGGGGTGGTTTAGGCATACGGAGCTCATTCCATGTCTAAG
66 GCTGAGCACACGCACGCTCATTTCGTGGGGTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAG
* ** * *
18009384 CCCTAACCGGATCGAGGGTTGTTACAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCC
131 CCCTAACCGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGAGAAGGACCGAGCCGATCC
* * * * * *
18009449 TCGACTTACGCATTATGGCTCTTCGATCGGCCTCTCCGCCC-ACACGCTCATTCCGTGGGTTGAC
196 TCGACTTACGCATTATGCCTCTCCGA-CGGACTCACCACCCGA-ACGCTCATTCCATGGGTTGAC
18009513 TTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTTATTCCCAATCTAAGATCGGACC
259 TTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTTATTCCCAATCTAAGATCGGACC
18009578 GGACTGAGGGTTGCTGTAGT
324 GGACTGAGGGTTGCTGTAGT
* * * *
18009598 AGGATCGGTAGCATGCAGGGGGGACCAGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCT-
1 AGGATCGGTAGCATGCAGAGAGGACCAGGTCGATCCCTGACTTCCGCATTCTGCCTCTCC-GATG
* * * * * *
18009662 GGCTGAGCGCATGCATGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 GGCTGAGCACACGCACGCTCATTTCGTGGGGTGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
* * * * * * * *
18009727 GCCCTAGCCGGATCGATGGTTGTGGCAGCGGGACTGGCAGCAGGTAGAGAAGGACCGAGCCGATC
130 GCCCTAACCGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGAGAAGGACCGAGCCGATC
* * * * * *
18009792 CTCGGCTTACGCGTTATGCCTCTCCGACTGACTCAGCACCCGAACGCTCGTTTCATGGGTTGACT
195 CTCGACTTACGCATTATGCCTCTCCGACGGACTCACCACCCGAACGCTCATTCCATGGGTTGACT
*
18009857 TAGGCATACGGAGTTCATTCCTAGTCTAA
260 TAGGCATACGGAGTTCATCCCTAGTCTAA
18009886 CATTGAATCG
Statistics
Matches: 243, Mismatches: 43, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
343 56 0.23
344 185 0.76
345 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
AGGATCGGTAGCATGCAGAGAGGACCAGGTCGATCCCTGACTTCCGCATTCTGCCTCTCCGATGG
GCTGAGCACACGCACGCTCATTTCGTGGGGTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAG
CCCTAACCGGATCGAGGGTTGTGACAGCAGGACCGACAGCACGCAGAGAAGGACCGAGCCGATCC
TCGACTTACGCATTATGCCTCTCCGACGGACTCACCACCCGAACGCTCATTCCATGGGTTGACTT
AGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTTATTCCCAATCTAAGATCGGACCGG
ACTGAGGGTTGCTGTAGT
Found at i:18010068 original size:26 final size:26
Alignment explanation
Indices: 18010018--18010070 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18010008 GTTCGCTTAG
*
18010018 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
18010044 GCATGCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18010070 G
1 G
18010071 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18010204 original size:185 final size:180
Alignment explanation
Indices: 18009860--18010414 Score: 574
Period size: 184 Copynumber: 3.0 Consensus size: 180
18009850 GTTGACTTAG
* * * * * *
18009860 GCATACGGAGTTCATTCCTAGTCTAACATTGAATCGAACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT-CCGTAGTAGGATCGACA
*** ** * *
18009925 GCATGCAGGGGCCACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTT-GAGTCTGCTGAGCGC
65 GCACATAGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTTCGA--CGGCTGAGCGC
*
18009989 CCGTACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 CCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * **
18010044 GCATGCGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGATGGTTATTGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT-CCGTAGTAGGATCGACA
*
18010109 GCACATAAGGGGGGACCGGGGCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACAGGCTGAGCGC
65 GCACAT-AGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTTCGAC-GGCTGAGCGC
* * * * *
18010174 CCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCGAA
127 CCGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * * *
18010229 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCG-TAGTAGGATCGACA
* * * * * * * *
18010294 GCACGTAGGGGGGATCAGGCCGATCCCCGGATTGCGCATTCTGCCTCTCCAACCGACTGAGTGCC
65 GCACATAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTTCGA-CGGCTGAGCGCC
* * *
18010359 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
18010413 GC
1 GC
18010415 CCCAACCAGA
Statistics
Matches: 308, Mismatches: 53, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
183 3 0.01
184 150 0.49
185 149 0.48
186 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (180 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGTAGTAGGATCGACAG
CACATAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTTCGACGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:18010399 original size:184 final size:181
Alignment explanation
Indices: 18009901--18010414 Score: 553
Period size: 185 Copynumber: 2.8 Consensus size: 181
18009891 AATCGAACCG
* * ** *
18009901 AGGGTTGCGGTAGTAGGATCGACAGCATGCAGGGGCCACCGGGTCGATCCCCGACTTGCGCATTC
1 AGGGTTGC-GTAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGA-TTGCGCATTC
* * * * *
18009966 TGCCTCTTGAGTCTGCTGAGCGCCCGTACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTC
64 TGCCTCTTCA-ACAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
18010031 ATTCCATGTCTAAGCATGCGGAGTTCATTCCCAATCTAAGATCGGATCGGACCG
128 ATCCCATGTCGAAGCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCA
* ** * * *
18010085 ATGGTTATTGTAGTAGGATCGACAGCACATAAGGGGGGACCGGGGCGATCCCCAGCTTGCGCATT
1 AGGGTT-GCGTAGTAGGATCGACAGCACGT-AGGGGGGACCGGGCCGATCCCC-GATTGCGCATT
* * * * *
18010150 CTGCCTCTTCGACAGGCTGAGCGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
63 CTGCCTCTTCAACA-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* *
18010215 CATCCCCA-GTCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGATCA
127 CAT-CCCATGTCGAAGCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCA
* * *
18010270 AGGGTTGCGATAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCGGATTGCGCATTC
1 AGGGTTGCG-TAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCC-GATTGCGCATTC
* * * * * *
18010335 TGCCTCTCCAACCGACTGAGTGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
64 TGCCTCTTCAACAG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* *
18010400 ATTCCATGTCTAAGC
128 ATCCCATGTCGAAGC
18010415 CCCAACCAGA
Statistics
Matches: 270, Mismatches: 52, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
183 4 0.01
184 116 0.43
185 146 0.54
186 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (181 bp):
AGGGTTGCGTAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGATTGCGCATTCTG
CCTCTTCAACAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATC
CCATGTCGAAGCATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCA
Found at i:18010942 original size:26 final size:26
Alignment explanation
Indices: 18010912--18010964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18010902 GTTGACTTAG
* *
18010912 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18010938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18010964 G
1 G
18010965 ATGAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18011494 original size:26 final size:26
Alignment explanation
Indices: 18011465--18011517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18011455 GTTGACTTAG
*
18011465 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18011491 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18011517 G
1 G
18011518 ATCAAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18011829 original size:26 final size:26
Alignment explanation
Indices: 18011799--18011851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18011789 GTTGGCTTAG
18011799 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
18011825 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18011851 G
1 G
18011852 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18012642 original size:26 final size:26
Alignment explanation
Indices: 18012612--18012683 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
18012602 TAGGCATACG
18012612 AAGTTCATTCCATGTCTAAGCAAACA
1 AAGTTCATTCCATGTCTAAGCAAACA
*
18012638 AAGTTCATTCCATGTCTAAGCATACA
1 AAGTTCATTCCATGTCTAAGCAAACA
*
18012664 GAGTTCATTCCCA-GTCTAAG
1 AAGTTCATT-CCATGTCTAAG
18012684 ATCGGACCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
AAGTTCATTCCATGTCTAAGCAAACA
Found at i:18013354 original size:26 final size:26
Alignment explanation
Indices: 18013317--18013395 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
18013307 GTTGGCTTAG
*
18013317 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGAAGTTTATTCCATGTCTAA
*
18013343 GCATATGAAGTTTATTCCATGTCTAA
1 GCATACGAAGTTTATTCCATGTCTAA
* *
18013369 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTTATT-CCATGTCTAA
18013395 G
1 G
18013396 ATCGAATCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCATGTCTAA
Found at i:18013737 original size:171 final size:170
Alignment explanation
Indices: 18013369--18013738 Score: 409
Period size: 171 Copynumber: 2.2 Consensus size: 170
18013359 CCATGTCTAA
** * *
18013369 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCGATAGCAGGACCAACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCCAATCGGACCAAGGGTTGCGACAGCAGGACCAACA
* * * * *
18013434 GCAGGATCGACAGCACACAAGAGGGATCGGGTTCAATCCCCGGCTTATGCATTTTGCCTCTCCGA
65 GCAGGATCGACAGCACACAAGAGGGACCAGGCTCAATCCCCAGCTTATGCATTATGCCTCTCCGA
* * * * *
18013499 CCGATTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAG
130 CCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
* * * * * * * * **
18013540 GCATGCGGAGTTTATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCAGTA
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAATCGGACCAAGGGTTGCGACAGCAGGACCAACA
* * * *
18013605 GCAGGATCGATAGCACACAGAGGGGGACCAGGCT-GATCCCCAGCTTATGCGTTATGCCTCTCCG
65 GCAGGATCGACAGCACACA-AGAGGGACCAGGCTCAATCCCCAGCTTATGCATTATGCCTCTCCG
* * * *
18013669 GCCGGCTGAGCGCCTATACGCTCATTTCATGGGTTGACTTAG
129 ACCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
18013711 GCATACGGAGTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
18013739 ATATGGAGTT
Statistics
Matches: 161, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
170 4 0.02
171 144 0.89
172 13 0.08
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (170 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCCAATCGGACCAAGGGTTGCGACAGCAGGACCAACAG
CAGGATCGACAGCACACAAGAGGGACCAGGCTCAATCCCCAGCTTATGCATTATGCCTCTCCGAC
CGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:18013741 original size:26 final size:26
Alignment explanation
Indices: 18013711--18013763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18013701 GTTGACTTAG
18013711 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18013737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18013763 G
1 G
18013764 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18013938 original size:26 final size:26
Alignment explanation
Indices: 18013908--18013959 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
18013898 GTTGACTTAG
* *
18013908 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18013934 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18013960 TGTCAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18013979 original size:197 final size:196
Alignment explanation
Indices: 18013688--18014048 Score: 494
Period size: 197 Copynumber: 1.8 Consensus size: 196
18013678 GCGCCTATAC
**
18013688 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
** * * * *
18013753 CCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGCAGGACTA-GCAGCAC-ACAGGGAGGA
66 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGA-TAGGCAGCACGA-AGGG-GGA
* ** * *
18013816 TTGAGCTGATCCTCGACTTGTGCATTTTGCCTCTCCAGCTGACCTCTCCAGCCGACTGAGCACCC
128 TCGAGCCAATCCCCGACTTGTGCATTCTGCCTCTCCAGCTGACCTCTCCAGCCGACTGAGCACCC
18013881 CCAT
193 CCAT
* *
18013885 GCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACAGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
* *
18013950 CCCAGTCTAATG-TCAGACCAGACCGAGGGTTGCGATAGTAGGATAGGCAGCACGTAAGGGGGAT
66 CCCAGTCTAA-GATCAGACCAGACCGAGGGTTGCGACAGCAGGATAGGCAGCACG-AAGGGGGAT
*
18014014 CGAGCCAATCCCCGGCTTGTGCATTCTGCCTCTCC
129 CGAGCCAATCCCCGACTTGTGCATTCTGCCTCTCC
18014049 GGTCGGCTGA
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
196 2 0.01
197 134 0.94
198 5 0.04
199 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (196 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATAGGCAGCACGAAGGGGGATCG
AGCCAATCCCCGACTTGTGCATTCTGCCTCTCCAGCTGACCTCTCCAGCCGACTGAGCACCCCCA
T
Found at i:18014433 original size:158 final size:159
Alignment explanation
Indices: 18014073--18014433 Score: 390
Period size: 158 Copynumber: 2.3 Consensus size: 159
18014063 TCGTACGCCT
* *
18014073 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGT
*** * * * *
18014138 TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATTCCTGGCTTGCGCATTATGCC
66 TACAGCAGCAGGATCGACAGCACGCAGAGAGGGATCCGGCCGATCCCTGGCTTGAGCATTATGCC
* *
18014203 TCTCCATCCAGTTCAGCACCCGCACGCTC
131 TCTCCATCAAGCTCAGCACCCGCACGCTC
* * * * **** *
18014232 GTTTCATGGGTTGACTTAGGCATACGGAGTTAACTCTCA-GTCTAAG-ATTGGACCGGACTGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGACAGAGG
* * * * * *
18014295 GTTACAGTAGTAGGATCGACAGCGCGCAG-GAAGGGA-CCGGTCGATCCCTGGCTTTAGCATTCT
64 GTTACAGCAGCAGGATCGACAGCACGCAGAG-AGGGATCCGGCCGATCCCTGGCTTGAGCATTAT
* *
18014358 GCCTCTTCGA-CAAGCTGAGCACCCGCACGCTC
128 GCCTC-TCCATCAAGCTCAGCACCCGCACGCTC
*
18014390 GTTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTA
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
18014434 GGCATACAGA
Statistics
Matches: 164, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 83 0.51
159 77 0.47
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGT
TACAGCAGCAGGATCGACAGCACGCAGAGAGGGATCCGGCCGATCCCTGGCTTGAGCATTATGCC
TCTCCATCAAGCTCAGCACCCGCACGCTC
Found at i:18015491 original size:26 final size:24
Alignment explanation
Indices: 18015431--18015496 Score: 91
Period size: 22 Copynumber: 2.8 Consensus size: 24
18015421 GTTGACTTAG
18015431 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
*
18015455 --ATACGTAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
18015477 AAGCATACGGAGTTCATTCC
1 --GCATACGGAGTTCATTCC
18015497 CAGAGTAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
22 21 0.58
26 15 0.42
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (24 bp):
GCATACGGAGTTCATTCCATGTCT
Found at i:18015995 original size:26 final size:26
Alignment explanation
Indices: 18015966--18016017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18015956 TTGGCTTAGT
18015966 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
18015992 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
18016018 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:18016480 original size:26 final size:26
Alignment explanation
Indices: 18016450--18016502 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18016440 GTTGACTTAG
*
18016450 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
18016476 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18016502 G
1 G
18016503 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18017056 original size:159 final size:159
Alignment explanation
Indices: 18016882--18017242 Score: 386
Period size: 159 Copynumber: 2.3 Consensus size: 159
18016872 ACGCCCGTTT
*
18016882 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAAGGTTGTG
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAAGGTTGTG
* ** **
18016947 GCAGCGGGACCGACAGCACGTAAAAAAAGA-TCGGATGGATCC-CTGACTTGCGCATTATGCCTC
66 GCAACAAGACCGACAGCACGTAAAAAAAGACTCGGACAG-TCCTC-GACTTGCGCATTATGCCTC
* * *
18017010 TTCGATCTGCTCAACGCCCGAACGCTCATTC
129 TCCGACCAGCTCAACGCCCGAACGCTCATTC
* * ** * * * *
18017041 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAACTGGACTGAGGGTTGT
1 CATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACTGAAGGTTGT
* ** ** * * *
18017105 GGCAACAAGATCGACAGCACGTAAGGAGGGACTGGGCCAGTCCTCGACTTGCGCATTCTGCCTCT
65 GGCAACAAGACCGACAGCACGTAAAAAAAGACTCGGACAGTCCTCGACTTGCGCATTATGCCTCT
* * * * *
18017170 CCGGCCAGCTGAGCGCCCGAACGCTCGTTT
130 CCGACCAGCTCAACGCCCGAACGCTCATTC
* *
18017200 CGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18017243 ATACAGAGTT
Statistics
Matches: 163, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 3 0.02
159 152 0.93
160 8 0.05
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAAGGTTGTG
GCAACAAGACCGACAGCACGTAAAAAAAGACTCGGACAGTCCTCGACTTGCGCATTATGCCTCTC
CGACCAGCTCAACGCCCGAACGCTCATTC
Found at i:18017437 original size:26 final size:26
Alignment explanation
Indices: 18017408--18017459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18017398 GTTGACTTAG
18017408 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
18017434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18017460 TATCAAACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18017781 original size:26 final size:26
Alignment explanation
Indices: 18017751--18017803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18017741 GTTGGATTAG
*
18017751 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18017777 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18017803 G
1 G
18017804 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18019500 original size:26 final size:26
Alignment explanation
Indices: 18019469--18019521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18019459 GTTAGCTTAG
*
18019469 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
18019495 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18019521 G
1 G
18019522 ATCCGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18019715 original size:26 final size:26
Alignment explanation
Indices: 18019664--18019716 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18019654 GTTGACTTAG
**
18019664 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAAACTAA
18019690 GCATACGGAGTTCATTCCC-AAACTAA
1 GCATACGGAGTTCA-TCCCTAAACTAA
18019716 G
1 G
18019717 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAAACTAA
Found at i:18020071 original size:159 final size:158
Alignment explanation
Indices: 18019690--18020074 Score: 371
Period size: 159 Copynumber: 2.4 Consensus size: 158
18019680 CCTAGTCTAA
* * ** *
18019690 GCATACGGAGTTCATTCCCAAACTAAGATCAAACCAGACTGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGATA
** ** * * * * * * *
18019755 GCATGTAGGCGGGACCGAGTTGATCTCTGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGTGCC
66 GCACATAGGCGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACAGACTCAGGGCC
* * *
18019820 CGCACGCCCGTTTTGTGGGTTGGCTTAG
131 CGAACGCCCGTTTCGTGGGTTGACTTAG
* * ** * * * * * * *
18019848 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCGAGAGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGA
* * *
18019911 TAGCACATAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATACCTCTCCGGTC-GACTCAG
64 TAGCACATAG-GCGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCC-GACAGACTCAG
* *
18019975 GGCCCGAACGCTCGTTTCGTTGGTTGACTTAG
127 GGCCCGAACGCCCGTTTCGTGGGTTGACTTAG
* * *
18020007 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTACGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGATA
18020072 GCA
66 GCA
18020075 TGCAGGGGGT
Statistics
Matches: 172, Mismatches: 49, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.02
158 51 0.30
159 113 0.66
160 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGATA
GCACATAGGCGGGACCGAGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACAGACTCAGGGCC
CGAACGCCCGTTTCGTGGGTTGACTTAG
Found at i:18020131 original size:26 final size:26
Alignment explanation
Indices: 18020085--18020135 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18020075 TGCAGGGGGT
* *
18020085 ATACGGAGTTTATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCAAGTCTAAGC
*
18020111 ATACGGAGTTCATTCCAAGTCTAAG
1 ATACGGAGTTCATCCCAAGTCTAAG
18020136 ATCGAACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCAAGTCTAAGC
Found at i:18020456 original size:26 final size:26
Alignment explanation
Indices: 18020426--18020478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18020416 GTTGGCTTAG
18020426 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
18020452 GCATACATAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
18020478 G
1 G
18020479 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:18021536 original size:159 final size:158
Alignment explanation
Indices: 18021183--18021677 Score: 383
Period size: 158 Copynumber: 3.1 Consensus size: 158
18021173 TAAGCTTACA
*
18021183 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGAAGGATCGACAGCACGCA
1 GAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGAAGGATCGACAGCACGCA
* * * * * ***
18021248 GGAGGGACCAGGCCGATCCCTGACTTGCACATTCTACCTCTCTGACCGGCTGTGCACCCGCACGC
66 GAAGGGACCAGACCGATCCCCGACTTGCACATTATACCTCTCCGACCGGCTCAACACCCGCACGC
* ** *
18021313 TTGTTTCGTGGGTTGGCTTAGGCATAAG
131 TCGTTTCGTGGGTTAACTTAGGCACAAG
** * * * * *
18021341 GAGTTCA-TTCCATGTCTAAGCCCCAGCT-GGATCGAGGGTTGTGGCA-ACGAGATCGACAGCAC
1 GAGTTCATTTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGAAG-GATCGACAGCAC
* * * * * **
18021403 GCAGAAGGGGATC-GAACCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCTCAACGCTTG
63 GCAGAA-GGGACCAG-ACCGATCCCCGACTTGCACATTATACCTCTCCGACCGGCTCAACACCCG
*
18021467 CACGCTCGTTTCGTGGGTTAACTTAGGCACACG
126 CACGCTCGTTTCGTGGGTTAACTTAGGCACAAG
* * * * * * *
18021500 GAGTTCATTTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGTAGGATTGATAGCACGTA
1 GAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGAAGGATCGACAGCACGCA
** * * * * * * * * * *
18021565 G--GGGACACCAGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGATCAGTTGAGCGCCCGCAC
66 GAAGGG--ACCAGACCGATCCCCGACTTGCACATTATACCTCTCCGACCGGCTCAACACCCGCAC
* * ** * *
18021628 ACTCATTTCGTGGGTTGGCTTAGGCATACG
129 GCTCGTTTCGTGGGTTAACTTAGGCACAAG
*
18021658 GAGTTCACTT-CATGTCTAAG
1 GAGTTCATTTCCA-GTCTAAG
18021678 CATACAGAGT
Statistics
Matches: 264, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 133 0.50
159 114 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGAAGGATCGACAGCACGCA
GAAGGGACCAGACCGATCCCCGACTTGCACATTATACCTCTCCGACCGGCTCAACACCCGCACGC
TCGTTTCGTGGGTTAACTTAGGCACAAG
Found at i:18022056 original size:26 final size:26
Alignment explanation
Indices: 18022019--18022071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18022009 GTTGACTTAG
*
18022019 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTGATCCCCAGTCTAA
* *
18022045 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTGATCCCCAGTCTAA
18022071 G
1 G
18022072 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTGATCCCCAGTCTAA
Found at i:18022231 original size:26 final size:26
Alignment explanation
Indices: 18022201--18022253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18022191 GTTGCCTTAG
18022201 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
18022227 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18022253 G
1 G
18022254 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18022411 original size:184 final size:181
Alignment explanation
Indices: 18021994--18022412 Score: 459
Period size: 182 Copynumber: 2.3 Consensus size: 181
18021984 GAGCACCTGT
* * *
18021994 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCAGTCTAAGCATACGAAGTTTA
1 ACACTCCTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
* * * * *
18022059 TTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACAGTAGCAGGATCGATAACACAGGGGGGATC
65 TTCCCAGTCTAAGATCGAACCAGACTGAGGGTTACAGCAGCAGGATCGACAACACAGGGGGGATC
* * *
18022124 GGGCCGTTCCCCGGCTTGCACATTCTACCTTTTCGGCCAGCTGAGCGCCCGC
130 GGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGCGCCCGC
* * *
18022176 TCACTCCTTTCATGGGTTGCCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
1 ACACTCCTTTCGTGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGAAGTTCA
* * * * *
18022241 TTCCCAGTCTAAGATCGAACCAGATCT-ATGGTTGCGGCAGCAGGGTC-AGCAGCATGCAGGGGG
65 TTCCCAGTCTAAGATCGAACCAGA-CTGAGGGTTACAGCAGCAGGATCGA-CAACA--CAGGGGG
* * * * * * * * *
18022304 GATTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCTGCCCGGTGGGTGCCCGC
126 GATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGCGCCCGC
* *
18022360 ACAC-CCATTTCGTGGGTTGGCTTAGGCATAACGAGTTCAT-TCCATGTCTAAGC
1 ACACTCC-TTTCGTGGGTTGACTTAGGCAT-ACGAGTTCATCCCCA-GTCTAAGC
18022413 CCCAGTCGGA
Statistics
Matches: 197, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
181 2 0.01
182 96 0.49
183 7 0.04
184 89 0.45
185 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (181 bp):
ACACTCCTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
TCCCAGTCTAAGATCGAACCAGACTGAGGGTTACAGCAGCAGGATCGACAACACAGGGGGGATCG
GGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGCGCCCGC
Found at i:18022708 original size:26 final size:26
Alignment explanation
Indices: 18022678--18022730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18022668 GTTGACCTAG
18022678 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
18022704 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18022730 G
1 G
18022731 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18022911 original size:26 final size:26
Alignment explanation
Indices: 18022861--18022913 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18022851 GTTGGCTTAG
*
18022861 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATAGGGAGTTCATTCCATATCTAA
*
18022887 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATAGGGAGTTCATT-CCATATCTAA
18022913 G
1 G
18022914 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCATATCTAA
Found at i:18023982 original size:26 final size:26
Alignment explanation
Indices: 18023952--18024004 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18023942 ATTGACTTAG
* *
18023952 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* *
18023978 GCATACAGAGTTCTTTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
18024004 G
1 G
18024005 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:18024302 original size:26 final size:26
Alignment explanation
Indices: 18024266--18024318 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18024256 GTTGGCTTAG
18024266 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
18024292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18024318 G
1 G
18024319 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18025027 original size:26 final size:26
Alignment explanation
Indices: 18024990--18025040 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18024980 TGACTTAGGG
18024990 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
18025016 ATACGGATTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
18025041 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:18025514 original size:26 final size:26
Alignment explanation
Indices: 18025477--18025529 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18025467 GTTGGCTTAT
*
18025477 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
* *
18025503 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
18025529 G
1 G
18025530 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGTCTAA
Found at i:18026238 original size:26 final size:26
Alignment explanation
Indices: 18026202--18026252 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18026192 TGACTTAGGT
*
18026202 ATACGGAGTTCATCCCCAGTATAAGC
1 ATACGAAGTTCATCCCCAGTATAAGC
* *
18026228 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTATAAG
18026253 ATCAAATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTATAAGC
Found at i:18026700 original size:158 final size:156
Alignment explanation
Indices: 18026226--18026726 Score: 518
Period size: 159 Copynumber: 3.2 Consensus size: 156
18026216 CCCAGTATAA
* * * * *
18026226 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAAGGTTACAG-AGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATC-AACCGAACCGAGGGTTGCAGTAGCAGGATCGACA
* ** *
18026290 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
64 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
18026355 CGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** ** * *
18026383 GCATAAGGATTTCATTCCATGTCTAAGCCCCAACCGAATTGAGGGTTGTGGTAGCAGGACCGGCA
1 GCATACGGAGTTCATCCCA-GTCTAAG-ATCAACCGAACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * * *
18026448 GCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTTTCCGACCGGCTCAACAC
64 GCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
18026513 CCGAACGCTCGTTTCGTGGGTTGACTTAG
128 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
18026542 GCATACGGAGTTCACTCCCAGTCTAAGATCAGGCCGAACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCA-ACCGAACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * **
18026607 GCACGTAGGGGGGATTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCTGACCGATTGAGCGCC
64 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * *
18026672 CGTACACTCGTTTCATGGTTTGGCTTAG
129 CGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
18026700 GCATACAGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATCCCA-GTCTAAG
18026727 CATACGAAGT
Statistics
Matches: 273, Mismatches: 64, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
156 4 0.01
157 34 0.12
158 108 0.40
159 123 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAACCGAACCGAGGGTTGCAGTAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18026935 original size:26 final size:26
Alignment explanation
Indices: 18026899--18026948 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
18026889 GACTTAGGCA
*
18026899 TACATAGTTCA-TCTCCAGTCTAAGCG
1 TACAGAGTTCATTC-CCAGTCTAAGCG
18026925 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
18026949 ATCTAACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCG
Found at i:18026936 original size:196 final size:195
Alignment explanation
Indices: 18026594--18027107 Score: 515
Period size: 196 Copynumber: 2.7 Consensus size: 195
18026584 GGGTTGCAGT
** * * * * *
18026594 AGCAGGATCGACAGCACGTAGGGGGGATTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCTGA
1 AGCAGGATCGACAGCACACAGGGGGGACTGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCGA
* * * * *
18026659 CCGATTGAGCGCCCGTACACTCGTTTCATGGTTTGGCTTAGGCATACAGAGTTTATTCCATGTCT
66 CCGACTGAGCACCCG-ACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCT
18026724 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGACCAA
130 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGACCAA
18026789 C
195 C
*
18026790 AGCAGGATCGACAGCACACAGGGGGGACTGGGTCGATCCCTAGCTTACGCATTTTGCCTCTCCGA
1 AGCAGGATCGACAGCACACAGGGGGGACTGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCGA
* * *
18026855 TCGACTGAGCACCC-ACATGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATCTCCA-GT
66 CCGACTGAGCACCCGACA--CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-TCCATGT
* *
18026918 CTAAGCGTAC-AGAGTTCATTCCCAGTCTAAGATCTA-ACCAGA-CTGAGGG-T-T---A-C-GG
128 CTAAGCATACGA-AGTTCATTCCCAGTCTAAGATC-AGACCGGATC-GAGGGTTGTGGCAGCAGG
18026973 --C-A-
190 ACCAAC
** * * ** * * *
18026975 A-CAGGATCGACAGCACGTAAGGGGGA-TCGGGTCGATCCTTAGCTTGTGTATTCTGCCTCTTCA
1 AGCAGGATCGACAGCACACAGGGGGGACT-GGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCG
* * * * * **
18027038 ACCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTC
65 ACCGACTGAGCACCCG-ACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTC
18027103 TAAGC
129 TAAGC
18027108 CCCAGCCGGA
Statistics
Matches: 270, Mismatches: 38, Indels: 32
0.79 0.11 0.09
Matches are distributed among these distances:
183 5 0.02
184 101 0.37
185 1 0.00
186 3 0.01
187 1 0.00
189 2 0.01
190 1 0.00
191 1 0.00
194 4 0.01
195 3 0.01
196 143 0.53
197 5 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (195 bp):
AGCAGGATCGACAGCACACAGGGGGGACTGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCGA
CCGACTGAGCACCCGACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGACCAAC
Found at i:18027546 original size:696 final size:695
Alignment explanation
Indices: 18026127--18027606 Score: 1711
Period size: 696 Copynumber: 2.1 Consensus size: 695
18026117 ACCACCCGTT
* * * * * ** *
18026127 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGT
1 CGATCCTC-GCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGT
* *
18026192 TGACTTAGGTATACGGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * * * *
18026257 AATCGGACCGAAGGTTACAGAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCT
130 AACCAGACCGAAGGTTACAGAACAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAGCT
*** * *
18026322 TGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
195 TGCGCATTCTGCCTCTCCAACCGGCTGAGCGCTCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
* ** * *
18026387 AAGGATTTCATTCCATGTCTAAGCCCCAACCGAATTGAGGGTTGTGGTAGCAGGACCGGCAGCAC
260 AAGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCAAGCGTTGTGGTAGCAGGACCGACAGCAC
* * * *
18026452 GCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTTTCCGACCGGCTCAACACCCGA
325 GCAAAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTTTACGACCGACTCAACACCCGA
18026517 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGGCCGAACC
390 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGGCCGAACC
* ** * * *
18026582 GAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGGGGGATTGGGTCGGTCCCTGGCTTGCGCATT
455 GAGGGTTGCAGTAACAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCTAGCTTGCGCATT
* * * * *
18026647 CTGCCTCTCTGACCGATTGAGCGCCCGTACACTCGTTTCATGGTTTGGCTTAGGCATACAGAGTT
520 CTGCCTATCTGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
* *
18026712 TATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGG
585 CATTCCATGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGG
* ** * *
18026777 CAGCAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACTGGGT
650 CAGCAGGACCAACAGCAAGATCGACAGCACACAGGAAGGACCGGGC
* * * *
18026823 CGATCCCTAGCTTACGCATTTTGCCTCTCCGATCGACTGAGCACCCACATGCTCGTTTCGTGGGT
1 CGAT-CCTCGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGT
* * * *
18026888 TGACTTAGGCATACATAGTTCATCTCCAGTCTAAGCGTAC-AGAGTTCATTCCCAGTCTAAGATC
65 TGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGA-AGTTCATTCCCAGTCTAAGATC
* * * * * * **
18026952 TAACCAGACTGAGGGTTACGGCAACAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCTTAG
129 AAACCAGACCGAAGGTTACAG-AACAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAG
* * *
18027017 CTTGTGTATTCTGCCTCTTCAACCGGCTGAGCGC-CTGCACGCCCGTTTCATGGGTTGACTTAGG
193 CTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCTC-GCACGCCCGTTTCATGGGTTGACTTAGG
* * * * * *
18027081 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGCTTTGTGGTAGCGGGACCGACGG
257 CATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCAAGCGTTGTGGTAGCAGGACCGACAG
* * * * ** * *
18027146 CACGCAAAGGGGGATCGGGCC-ATCCTTGGCTTGCACATTATTCCTTTACGGTCGACTTAGCACC
322 CACGCAAAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTTTACGACCGACTCAACACC
* * * * * *
18027210 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGATC-GGACTG
387 CGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGG-C-C
* *
18027274 GAA-TGAGGGTTGCAGTAATAGGATCGACAGCACGTAGGGTGGG-TCCAGGCCGAT-CCTCAGCT
450 GAACCGAGGGTTGCAGTAACAGGATCGACAGCACGTAGGG-GGGAT-CAGGCCGATCCCT-AGCT
** * * **
18027336 TGCGCATT-TCGCCTATC-GGTCGGCTGAGCGCCTGCACGTTCATTTCATGGGTTGGCTTAGGCA
512 TGCGCATTCT-GCCTATCTGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCA
* * * * *
18027399 TACGGAGTTCATTCCATGTCTAAGCATAC-AGACTTCATTTCTAGTCTAAGATCCGATCGGATCG
576 TACAGAGTTCATTCCATGTCTAAGCATACGA-ACTTCATTCCCAGTCTAAGATCAGACCGGATCG
* * * * *
18027463 AGGGTTGTGGTAGCAGGACTAGCAGCAAGATCGATAGCACTCAAGGAAGGACCGGGC
640 AGGGTTGTGGCAGCAGGACCAACAGCAAGATCGACAGCACAC-AGGAAGGACCGGGC
* * ** ** ** * * * *
18027520 CGATCCTCGCTTGCGTATTCTGCCTCTCTGGCCGGTTGAGTGCCCACCCACTCCTTTCATGGGTT
1 CGATCCTCGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTT
* *
18027585 GGCTTAGGCATACAGTGTTCAT
66 GACTTAGGCATACAGAGTTCAT
18027607 TCCATGTCTA
Statistics
Matches: 649, Mismatches: 123, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
695 4 0.01
696 438 0.67
697 207 0.32
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (695 bp):
CGATCCTCGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
ACCAGACCGAAGGTTACAGAACAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCAGCTT
GCGCATTCTGCCTCTCCAACCGGCTGAGCGCTCGCACGCCCGTTTCATGGGTTGACTTAGGCATA
AGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCAAGCGTTGTGGTAGCAGGACCGACAGCACG
CAAAGGGGGACCGGGCCGATCCCTGACTTGCACATTATGCCTTTACGACCGACTCAACACCCGAA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGGCCGAACCG
AGGGTTGCAGTAACAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCTAGCTTGCGCATTC
TGCCTATCTGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGC
AGCAGGACCAACAGCAAGATCGACAGCACACAGGAAGGACCGGGC
Found at i:18027807 original size:26 final size:26
Alignment explanation
Indices: 18027777--18027829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18027767 GTTGACTTAG
18027777 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCACTCCC-AGTCTAA
*
18027803 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
18027829 G
1 G
18027830 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:18028185 original size:26 final size:26
Alignment explanation
Indices: 18028149--18028201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18028139 GTTGGCTTAG
*
18028149 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18028175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18028201 G
1 G
18028202 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18028725 original size:26 final size:26
Alignment explanation
Indices: 18028687--18028739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18028677 GTTGACTTAG
* *
18028687 GCATACGGCGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18028713 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18028739 G
1 G
18028740 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18029294 original size:159 final size:159
Alignment explanation
Indices: 18028720--18029299 Score: 523
Period size: 159 Copynumber: 3.7 Consensus size: 159
18028710 TAAGCATACA
* * * *
18028720 GAGTTCATCCCCAGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGC
1 GAGTTCATTCCAAGTCTAAGCCTCAG-CCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGC
* *
18028784 AGGGGGGACCAGG-TCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCTGCAC
65 AGGGGGGACCAGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCAC
* * * *
18028848 ACCCATTTCATGGTTTGGCTTAGGCATAGG
130 GCCCGTTTCATGGGTTGGCTTAGGCATAAG
* * ** *
18028878 GAGTTCATTCCATGTCTAAGCCTCAGCC-GAACCGAGGGTTATGGCAGTAGGATCGGTAGCACGT
1 GAGTTCATTCCAAGTCTAAGCCTCAGCCAG-ACCGAGGGTTGTGGCAGTAGGATCGACAGCACGC
* * ** * * * * * *
18028942 AGAGGTGGACCGGGC-CGATCCCCATCTTGCGCATTATGCCTCTACGATCGGCTCCA-CACCTGA
65 AG-GGGGGACCAGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCT-GAGCGCCTGC
** * *
18029005 ACGCTTGTTTCATGGGTTGACTTAGGCATACG
128 ACGCCCGTTTCATGGGTTGGCTTAGGCATAAG
* * * * * * *
18029037 GAGTTCATT-CATAGTCTATG-ATTAGATCGGACCGAGGGTTGCGGCAGTAGGATCAACAGCACG
1 GAGTTCATTCCA-AGTCTAAGCCTCAG-CCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACG
* * ** * *
18029100 CAGGGGGGGACC-GGGTCGATCCCCGACTTGTGCATTCTACCTCTCCGACCGGCTGAGCG-CTCG
64 CA-GGGGGGACCAGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCT-G
*
18029163 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
127 CACGCCCGTTTCATGGGTTGGCTTAGGCATAAG
* * * * * * *
18029196 GAGTTCATTCCAAGTCTAAGCCCCAGCCAGATCGAGGATTGTGGCAGTGGGATCGGCAACACGAA
1 GAGTTCATTCCAAGTCTAAGCCTCAGCCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
** * *
18029261 GGGAGGGA-TTGGCTCGATCCCTGGCTTACGCATTCTGCC
66 GGG-GGGACCAGGCTCGATCCCCGGCTTACGCATTATGCC
18029300 ACCCTGGTTG
Statistics
Matches: 329, Mismatches: 77, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 63 0.19
159 258 0.78
160 7 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCAAGTCTAAGCCTCAGCCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
GGGGGGACCAGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCTGCACG
CCCGTTTCATGGGTTGGCTTAGGCATAAG
Found at i:18029397 original size:26 final size:26
Alignment explanation
Indices: 18029361--18029413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18029351 GTTGACTTAG
* *
18029361 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18029387 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
18029413 G
1 G
18029414 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:18031748 original size:26 final size:26
Alignment explanation
Indices: 18031718--18031770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18031708 GTTGACTTAG
*
18031718 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
*
18031744 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
18031770 G
1 G
18031771 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:18032243 original size:158 final size:157
Alignment explanation
Indices: 18031744--18032245 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
18031734 CCCAGTCTAA
* * *
18031744 GCATACAGAATTCATTCCCA-GTCTAAGATCAGATCGGATCAAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGAC
* * * * * *
18031808 AGCACGCAGGGGGGATCGGGCCGATCCCTGACATGCACATTCTGCCTCTCCTACCGGCTGAGTGC
65 AGCATGCA-GGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTGC
*
18031873 CCGCACACCCGTTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* ** * ** * *
18031902 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACGAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGAC
* * * * * * *
18031966 AGCACGTAG-AGGGGGATCGAGCCGAT-CCTCGGCTTACGCATTATGCCTTTTCGATCGGCTCAA
65 AGCA--T-GCAGGGGGATCGAGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGATCGGCTGAG
* * * *
18032029 TGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
126 TGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* ** * *
18032061 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCAAGGGATGCAGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGAC
* * *** * *
18032125 AGCATGCAGGGGGACCAAATTGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCC
65 AGCATGCAGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTG-C
* * *
18032190 CCGCACTCTCATTTCGTGGGTTGGCTTCG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
*
18032219 GCATACGGAGTTCAATCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
18032246 CAGACAGAGT
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 45 0.17
158 101 0.38
159 116 0.43
160 4 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGACA
GCATGCAGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGTGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:18033125 original size:59 final size:59
Alignment explanation
Indices: 18033062--18033452 Score: 389
Period size: 60 Copynumber: 6.7 Consensus size: 59
18033052 TTATGCAGGA
* *
18033062 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTAATTTTAAGG
* *
18033121 AAAATTGATACTTTCAACTTTTCCTTAAAAAT-TGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATAT--TTTTTTTGAAAATTTAATTTTAAGG
* * *
18033181 AAAATTGATACTTTCAACTTTTCCGC-AAAAATA-TTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTAATTTT-AAGG
* * ** *
18033240 AAAATTGACACTTTCAACTTTT-CCTCAAAA-CCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTAATTTTAAGG
* *
18033297 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAAATTTTGATCTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT-GAAAA-TTTAAT-TTTAAGG
* ** * ** * *
18033359 AAAATT-CT--TTTC--C---T--AAAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAAAATTTAATTTTAAGG
*
18033409 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTTTGA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATT-TTTTTTGA
18033453 TTTTTATTTA
Statistics
Matches: 269, Mismatches: 39, Indels: 47
0.76 0.11 0.13
Matches are distributed among these distances:
50 12 0.04
51 5 0.02
52 10 0.04
53 10 0.04
54 1 0.00
55 1 0.00
57 27 0.10
58 48 0.18
59 67 0.25
60 71 0.26
61 5 0.02
62 12 0.04
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTAATTTTAAGG
Found at i:18033212 original size:119 final size:115
Alignment explanation
Indices: 18033062--18033452 Score: 446
Period size: 119 Copynumber: 3.4 Consensus size: 115
18033052 TTATGCAGGA
*
18033062 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTTGAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTTAAGGAAAATT
*
18033127 GATACTTTCAACTTTTCCTTAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
66 GA-ACTTTCAACTTTTCC-TAAAAA--AATTTTTTTGAAAATTTATTTTTAAGG
* *
18033181 AAAATTGATACTTTCAACTTTTCCGC-AAAAATA-TTTTTTGGAAACTTTTATTTTCAAGGAAAA
1 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAACTTTAATTTT-AAGGAAAA
* **
18033244 TTGACACTTTCAACTTTTCCTCAAAACCTTTTTTTGAAAATTTATTTTTAAGG
64 TTGA-ACTTTCAACTTTTCCTAAAAAAATTTTTTTGAAAATTTATTTTTAAGG
* * *
18033297 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAAATTTTGATCTTCAAGG--A
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT-G-AAACTTTAAT-TTTAAGGAAA
* *
18033360 A---AA--TT---CTTTTCCTAAAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGG
63 ATTGAACTTTCAACTTTTCCT--AAAAAAA--TTTTTTTGAAAATTTATTTTTAAGG
*
18033409 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTTTGA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATT-TTTTTTGA
18033453 TTTTTATTTA
Statistics
Matches: 243, Mismatches: 17, Indels: 32
0.83 0.06 0.11
Matches are distributed among these distances:
108 8 0.03
110 4 0.02
111 3 0.01
112 58 0.24
113 7 0.03
114 1 0.00
115 1 0.00
116 56 0.23
117 8 0.03
118 25 0.10
119 69 0.28
120 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (115 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTTAAGGAAAATT
GAACTTTCAACTTTTCCTAAAAAAATTTTTTTGAAAATTTATTTTTAAGG
Found at i:18033475 original size:112 final size:109
Alignment explanation
Indices: 18033062--18033475 Score: 329
Period size: 112 Copynumber: 3.6 Consensus size: 109
18033052 TTATGCAGGA
* * * * *
18033062 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTTGAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AATTTTTA-TTTAAAGAAAA-T
** ***
18033127 GATACTTTCAACTTTTCCTTAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
63 -A-AAATT--ACTTTTCC-TAAAAA--CCCTTTTTTGAAAATTTATTTTTAAGG
* * * *
18033181 AAAATTGATACTTTCAACTTTTCCGCAAAAATA-TTTTTTGGAAACTTTTATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG-AATTTTTA-TTT-AAAGAAAA-
** * *
18033245 TGACACTTTCAACTTTTCCTCAAAACCTTTTTTTGAAAATTTATTTTTAAGG
62 T-A-AAATT--ACTTTTCCTAAAAACCCTTTTTTGAAAATTTATTTTTAAGG
* * *
18033297 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAAATTTTGATCTTCAAG----
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT-G--AATTTTTAT-TTAAAGAAAA
* *
18033358 GAAAATT-CTTTTCCTAAAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGG
62 TAAAATTACTTTTCCT----AAAAACCCTTTTTTGAAAATTTATTTTTAAGG
18033409 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTTTG-ATTTTTATTTAAAGAAAATAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTTTGAATTTTTATTTAAAGAAAATAA
18033473 AAT
65 AAT
18033476 AATAAAACAA
Statistics
Matches: 255, Mismatches: 26, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
108 13 0.05
109 7 0.03
111 3 0.01
112 70 0.27
113 6 0.02
116 56 0.22
117 6 0.02
118 28 0.11
119 66 0.26
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (109 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAATTTTTATTTAAAGAAAATAAA
ATTACTTTTCCTAAAAACCCTTTTTTGAAAATTTATTTTTAAGG
Found at i:18033499 original size:30 final size:30
Alignment explanation
Indices: 18033465--18033521 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
18033455 TTTATTTAAA
18033465 GAAAATAAAATA-ATAAAACAAAATAAAAGT
1 GAAAATAAAA-AGATAAAACAAAATAAAAGT
*
18033495 GAAAATAAAAAGATAAAATAAAATAAA
1 GAAAATAAAAAGATAAAACAAAATAAA
18033522 GAAAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (30 bp):
GAAAATAAAAAGATAAAACAAAATAAAAGT
Found at i:18033505 original size:13 final size:13
Alignment explanation
Indices: 18033469--18033517 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
18033459 TTTAAAGAAA
18033469 ATAAAATAATAAA-
1 ATAAAATAA-AAAG
*
18033482 ACAAAAT-AAAAG
1 ATAAAATAAAAAG
18033494 -TGAAAATAAAAAG
1 AT-AAAATAAAAAG
18033507 ATAAAATAAAA
1 ATAAAATAAAA
18033518 TAAAGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
11 3 0.10
12 6 0.20
13 20 0.67
14 1 0.03
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (13 bp):
ATAAAATAAAAAG
Found at i:18033605 original size:16 final size:17
Alignment explanation
Indices: 18033584--18033616 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
18033574 AAACCGAATC
18033584 TAATAAAT-AAATAAAA
1 TAATAAATAAAATAAAA
18033600 TAATAAATAAAATAAAA
1 TAATAAATAAAATAAAA
18033617 AAATTCAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
TAATAAATAAAATAAAA
Found at i:18033606 original size:12 final size:12
Alignment explanation
Indices: 18033589--18033614 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18033579 GAATCTAATA
18033589 AATAAATAAAAT
1 AATAAATAAAAT
18033601 AATAAATAAAAT
1 AATAAATAAAAT
18033613 AA
1 AA
18033615 AAAAATTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AATAAATAAAAT
Found at i:18034574 original size:34 final size:35
Alignment explanation
Indices: 18034517--18034582 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 35
18034507 AATAACAGAT
18034517 ATATAATTAGATAAATAAAAATAAAAAAATAAAAAA
1 ATATAATTAGATAAATAAAAAT-AAAAAATAAAAAA
** *
18034553 ATAT-ATTA-ATAAATAGTAATAATAAATAAA
1 ATATAATTAGATAAATAAAAATAAAAAATAAA
18034583 TAATAAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 9 0.33
34 10 0.37
35 4 0.15
36 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (35 bp):
ATATAATTAGATAAATAAAAATAAAAAATAAAAAA
Found at i:18034603 original size:29 final size:29
Alignment explanation
Indices: 18034544--18034622 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 29
18034534 AAAATAAAAA
* *
18034544 AATAAAAAAATATATTAATAAATAGTAAT
1 AATAAAAAAATATATAAATAAATAGGAAT
* *
18034573 AATAAATAAATA-ATAAATACATAGG-AT
1 AATAAAAAAATATATAAATAAATAGGAAT
*
18034600 -ATAAAGGAAAATATATACATAAA
1 AATAAA--AAAATATATAAATAAA
18034623 ATATAGAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
26 5 0.12
27 2 0.05
28 15 0.38
29 18 0.45
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.27
Consensus pattern (29 bp):
AATAAAAAAATATATAAATAAATAGGAAT
Found at i:18034642 original size:8 final size:8
Alignment explanation
Indices: 18034629--18034667 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
18034619 TAAAATATAG
*
18034629 AATAAAAT
1 AATAAAAA
18034637 AATAAAAA
1 AATAAAAA
18034645 AAT-AAAA
1 AATAAAAA
18034652 AATAACAAA
1 AATAA-AAA
18034661 AATAAAA
1 AATAAAA
18034668 TTGGACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:18034650 original size:16 final size:17
Alignment explanation
Indices: 18034629--18034668 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
18034619 TAAAATATAG
18034629 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
18034645 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
18034661 AATAAAAT
1 AATAAAAT
18034669 TGGACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:18034655 original size:23 final size:24
Alignment explanation
Indices: 18034620--18034667 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
18034610 ATATATACAT
* * *
18034620 AAAATATAGAATAA-AATAATAAA
1 AAAATAAAAAATAACAAAAATAAA
18034643 AAAATAAAAAATAACAAAAATAAA
1 AAAATAAAAAATAACAAAAATAAA
18034667 A
1 A
18034668 TTGGACTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (24 bp):
AAAATAAAAAATAACAAAAATAAA
Found at i:18034847 original size:18 final size:18
Alignment explanation
Indices: 18034814--18034883 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
18034804 CAACATTTTC
*
18034814 ATTTTTTGATTTTTTTAT
1 ATTTTTTGTTTTTTTTAT
*
18034832 ATTTTTTGTTTTTTTTGT
1 ATTTTTTGTTTTTTTTAT
* *
18034850 TTGTTTTTGTTTTTGTTTTT
1 AT-TTTTTGTTTTT-TTTAT
18034870 ATTTTATT-TTTTTT
1 ATTTT-TTGTTTTTT
18034884 AACCAAAGCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 18 0.41
19 19 0.43
20 7 0.16
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.83
Consensus pattern (18 bp):
ATTTTTTGTTTTTTTTAT
Found at i:18034856 original size:12 final size:11
Alignment explanation
Indices: 18034833--18034883 Score: 57
Period size: 12 Copynumber: 4.4 Consensus size: 11
18034823 TTTTTTTATA
18034833 TTTTTTGTTTTT
1 TTTTTTG-TTTT
18034845 TTTGTTTGTTTT
1 TTT-TTTGTTTT
18034857 TGTTTTTGTTTT
1 T-TTTTTGTTTT
* *
18034869 TATTTTATTTT
1 TTTTTTGTTTT
18034880 TTTT
1 TTTT
18034884 AACCAAAGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 11 0.32
12 17 0.50
13 6 0.18
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.86
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:18034880 original size:6 final size:6
Alignment explanation
Indices: 18034834--18034874 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
18034824 TTTTTTATAT
* *
18034834 TTTTTG TTTTTT TTGTTTG TTTTTG TTTTTG TTTTTA TTTT
1 TTTTTG TTTTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTT
18034875 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:18034961 original size:42 final size:42
Alignment explanation
Indices: 18034891--18035193 Score: 434
Period size: 42 Copynumber: 7.1 Consensus size: 42
18034881 TTTAACCAAA
* * * *
18034891 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
18034933 ACTCCTCTAAACAGAGGCACCACAACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
18034975 GCTCCTCTAAACAGAACAGAGGCACCACGAC-TTTG-AAAGTAAATT
1 GCTCCTCT----A-AACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
18035020 GCTTCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
18035062 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG--AAAAGTAAATT
*
18035105 GCTCCTCTAAACAGAGGCACCATGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
18035147 GCTCCTCTAAATAGAGGCACCACGAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
18035188 GCTCCT
1 GCTCCT
18035194 TGAGAATCAT
Statistics
Matches: 238, Mismatches: 13, Indels: 21
0.88 0.05 0.08
Matches are distributed among these distances:
40 17 0.07
41 30 0.13
42 113 0.47
43 36 0.15
44 4 0.02
45 17 0.07
46 5 0.02
47 16 0.07
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
Found at i:18035132 original size:85 final size:83
Alignment explanation
Indices: 18034891--18035193 Score: 455
Period size: 85 Copynumber: 3.6 Consensus size: 83
18034881 TTTAACCAAA
* * * *
18034891 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATTACTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
18034956 AACTTTTGAAAAGTAAATT
65 GACTTTTGAAAAGTAAATT
*
18034975 GCTCCTCTAAACAGAACAGAGGCACCACGACTTTG-AAAGTAAATTGCTTCTCTAAACAGAGGCA
1 GCTCCTCT----A-AACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
18035039 CCACGACTTTTGAAAAGTAAATT
61 CCACGACTTTTGAAAAGTAAATT
18035062 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTG--AAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
*
18035127 TGACTTTTGAAAAGTAAATT
64 CGACTTTTGAAAAGTAAATT
*
18035147 GCTCCTCTAAATAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCT
18035194 TGAGAATCAT
Statistics
Matches: 202, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
82 21 0.10
83 18 0.09
84 8 0.04
85 79 0.39
87 56 0.28
88 2 0.01
89 18 0.09
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTGAAAAGTAAATT
Found at i:18036231 original size:7 final size:7
Alignment explanation
Indices: 18036219--18036287 Score: 52
Period size: 7 Copynumber: 9.7 Consensus size: 7
18036209 TTTTTCAAAC
18036219 TTTTTCT
1 TTTTTCT
18036226 TTTTTCAT
1 TTTTTC-T
*
18036234 TTTTTAT
1 TTTTTCT
18036241 TTTTT-T
1 TTTTTCT
**
18036247 TAATT-T
1 TTTTTCT
*
18036253 TTTTTAT
1 TTTTTCT
*
18036260 TTTTTCA
1 TTTTTCT
18036267 TTTTTCAT
1 TTTTTC-T
18036275 TTTTTCT
1 TTTTTCT
18036282 CTTTTT
1 -TTTTT
18036288 NNNNNNNNNN
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
6 8 0.16
7 25 0.50
8 17 0.34
ACGTcount: A:0.10, C:0.09, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:18036236 original size:8 final size:8
Alignment explanation
Indices: 18036219--18036280 Score: 58
Period size: 8 Copynumber: 7.8 Consensus size: 8
18036209 TTTTTCAAAC
18036219 TTTTTC-T
1 TTTTTCAT
18036226 TTTTTCAT
1 TTTTTCAT
18036234 TTTTT-ATTT
1 TTTTTCA--T
*
18036243 TTTTTAATT
1 TTTTTCA-T
*
18036252 TTTTTTAT
1 TTTTTCAT
18036260 TTTTTCA-
1 TTTTTCAT
18036267 TTTTTCAT
1 TTTTTCAT
18036275 TTTTTC
1 TTTTTC
18036281 TCTTTTTNNN
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
7 14 0.29
8 19 0.40
9 14 0.29
10 1 0.02
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTCAT
Found at i:18036238 original size:10 final size:9
Alignment explanation
Indices: 18036233--18036264 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
18036223 TCTTTTTTCA
18036233 TTTTTTATT
1 TTTTTTATT
18036242 TTTTTTAATT
1 TTTTTT-ATT
18036252 TTTTTTATT
1 TTTTTTATT
18036261 TTTT
1 TTTT
18036265 CATTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTATT
Found at i:18037532 original size:26 final size:26
Alignment explanation
Indices: 18037496--18037548 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18037486 GTTGGCTTAG
18037496 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18037522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18037548 G
1 G
18037549 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18038589 original size:26 final size:26
Alignment explanation
Indices: 18038559--18038611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18038549 GTTGACTTAG
*
18038559 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18038585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18038611 G
1 G
18038612 ATTAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18038938 original size:26 final size:26
Alignment explanation
Indices: 18038902--18038954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18038892 GTTGGCTTAG
*
18038902 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18038928 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18038954 G
1 G
18038955 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18040157 original size:26 final size:26
Alignment explanation
Indices: 18040120--18040172 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18040110 GTTGGCTTAG
18040120 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
18040146 GCATAC-ACAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
18040172 G
1 G
18040173 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:18041908 original size:184 final size:184
Alignment explanation
Indices: 18041540--18041895 Score: 469
Period size: 184 Copynumber: 1.9 Consensus size: 184
18041530 TTGACTTAGA
*
18041540 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAACAGGATTGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAACAGGATTGACAG
* * ** * * * *
18041605 TACGCAGGGGGGATCGGGCCGGTCCATGGCTTACGCATTCTATCTCTCTGGCCGACTGAGCGCCC
66 CACGCAGGGGGGATCGAGCCAATCCATGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCC
* *
18041670 GCACGCTCATTTCATGGGTTGCCTTAGGCATATGGAGTTCATCCCCAGTCTAAG
131 GCACGCCCATTTCATGGGTTGCCTTAGGCATAGGGAGTTCATCCCCAGTCTAAG
* * * * *
18041724 CATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATTGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAACAGGATTGACAG
* * * * **
18041789 CACGTAGGGGGGATCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTTGAGCGCCC
66 CACGCAGGGGGGATCGAGCCAATCCATGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCC
* * ** *
18041854 GCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAT
131 GCACGCCCATTTCATGGGTTGCCTTAGGCATAGGGAGTTCAT
18041896 TTCATGTCTA
Statistics
Matches: 145, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 145 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAACAGGATTGACAG
CACGCAGGGGGGATCGAGCCAATCCATGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCC
GCACGCCCATTTCATGGGTTGCCTTAGGCATAGGGAGTTCATCCCCAGTCTAAG
Found at i:18042069 original size:26 final size:26
Alignment explanation
Indices: 18042040--18042092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18042030 GTTGGCTTAG
*
18042040 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18042066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18042092 G
1 G
18042093 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18042904 original size:26 final size:26
Alignment explanation
Indices: 18042875--18042927 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18042865 GTTAGCTTAG
18042875 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18042901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18042927 G
1 G
18042928 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18043246 original size:26 final size:26
Alignment explanation
Indices: 18043210--18043262 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18043200 GTTGACTTAG
18043210 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
18043236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18043262 G
1 G
18043263 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18044469 original size:26 final size:26
Alignment explanation
Indices: 18044431--18044483 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18044421 GTTAGCTTAG
18044431 GCATACGATGTTCATT-CCATGTCTAA
1 GCATACGATGTTCATTCCCA-GTCTAA
18044457 GCATACAGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
18044483 G
1 G
18044484 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:18044681 original size:12 final size:12
Alignment explanation
Indices: 18044664--18044694 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
18044654 CGAGGGTTGT
18044664 GACAGCAGGATC
1 GACAGCAGGATC
18044676 GACAGCAGGATC
1 GACAGCAGGATC
*
18044688 GATAGCA
1 GACAGCA
18044695 TGTAGAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.32, T:0.10
Consensus pattern (12 bp):
GACAGCAGGATC
Found at i:18044834 original size:26 final size:26
Alignment explanation
Indices: 18044786--18044837 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18044776 GTTAACTTAG
* *
18044786 GCATACGGAGTTTATCTCGAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
18044812 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
18044838 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:18045118 original size:159 final size:159
Alignment explanation
Indices: 18044812--18045316 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 159
18044802 TCGAGTCTAA
* * * *
18044812 GCATACGGAGTTCATTCCCA-GTCTAA--ATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGACAGCAGGATCGA
* * * * * *
18044874 CAGCACGCAGGGGGGATCGGGTCC-ATCCCCGGCTTACGTATTTTGCCTTTTCTAGCCTGCTGAG
65 CAGCACGCAGGGGGGACCGGG-CCGATCCCCGGCTTACGCATTATGCCTCTTC-AGACGGCTGAG
*
18044938 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
18044970 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGACAGCAGGATCGAC
* * * * * *
18045034 AGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCGTTATGCCTCTTCGGTCGGCTCAGCA
66 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGACGGCTGAGCG
* * * *
18045099 CCTGCATGCTCGTTTCGTGGGTTGACTTAT
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** *
18045129 GCATACGAAGTTTATTCCCTGTCTAAG-ATCAGACTGGACCGAA-GGTTATGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACC-AAGGGTTGTGACAGCAGGATCGA
* * ** * * * *
18045192 CAGCATGCTGGGGGTGACTAGGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCCGACAGGCTGAG
65 CAGCACGCAGGGGG-GACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGAC-GGCTGAG
**
18045256 CGCCCGCACGCTCGTTTAATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
18045288 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18045317 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 61, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 32 0.12
159 203 0.74
160 38 0.14
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGTGACAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGACGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18045338 original size:26 final size:26
Alignment explanation
Indices: 18045288--18045340 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18045278 GTTGGCTTAG
*
18045288 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18045314 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18045340 G
1 G
18045341 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18046041 original size:26 final size:26
Alignment explanation
Indices: 18046011--18046061 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
18046001 TTGACTTAGG
18046011 CATACGAAGTTCATCCCCAATCTAAA
1 CATACGAAGTTCATCCCCAATCTAAA
* * *
18046037 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAATCTAA
18046062 GATCGGGTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAA
Found at i:18046978 original size:159 final size:157
Alignment explanation
Indices: 18046721--18047161 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 157
18046711 CAGGATTGGT
* * * *
18046721 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTAGCTAAGCAC
1 AGCACGCAGGGGGGACCGGGTCGAT-CCCTGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCGC
* * * * * *
18046786 CTGCA-TGCTCGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
65 CCGCACT-CTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGAC
* ** * *
18046849 CAGATTGAGGGTTGTGGCAGCGGGATTGAC
128 CAAACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
18046879 AGCACGCAGAGGGGGACCGGGTCGATCCCTGCCTTGCGTATTATGCCTCTTCGGCTGGCTCAGCG
1 AGCACGCAG-GGGGGACCGGGTCGATCCCTG-CTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCG
** * * * *
18046944 CCCGCACTCTCATTTTGTGGGTTGATTTATGCATACGGAGTTCATTCCCAGTGTAAG-ATCAGAT
64 CCCGCACTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGAC
*
18047008 CAAACCGAGGGTTGTGGTAGCAGGATCGAC
128 CAAACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
18047038 AGTACGCAGGGGGGGAGCGGGTCGATCTCTGGCTTGTGCATTCTACCTCTCCGG-TCGGCTGAGT
1 AGCACGCA-GGGGGGACCGGGTCGATCCCT-GCTTGCGCATTCTGCCTCTCCGGCT-GGCTAAGC
* * * * *
18047102 GCCCGTACCCTTATTCTGCGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCA
63 GCCCGCACTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
18047162 TACGGAGTTC
Statistics
Matches: 228, Mismatches: 45, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
158 20 0.09
159 201 0.88
160 7 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGGGTCGATCCCTGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCGCC
CGCACTCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAA
ACCGAGGGTTGTGGCAGCAGGATCGAC
Found at i:18047159 original size:621 final size:621
Alignment explanation
Indices: 18045974--18047162 Score: 1734
Period size: 621 Copynumber: 1.9 Consensus size: 621
18045964 TCTGGTCGGC
*
18045974 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACA
1 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACA
* *
18046039 TACGGAGTTCATTCCCAGTCTAAGATCGGGTCGGATCAAGGGTTGCAACAGTAGGATCGACAACA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGCTCGGATCAAGGGTTGCAACAGCAGGATCGACAACA
* * * * * * * * **
18046104 TGTAGAGGGGACCGGGTCGATCCCCGGCTTGCACGTTCTGCCTCTCCGGCCGGTTGAGTGCCCGC
131 CGCAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTAAGCACCCGC
* * *
18046169 ACGCCCATTTTGTGGGTTGCCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
196 ACGCCCATTTCGTGGGATGCCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
18046234 AAGGGTTGTGGCAGCGGGATTGACAACACACAGAAGGGGACCGGACCGATCCCCGCCTTGCGTAT
261 AAGGGTTGTGGCAGCGGGATTGACAACACACAGAAGGGGACCGGACCGATCCCCGCCTTGCGTAT
18046299 TATGCCTCTTCGGCTAGCTCAGCGCCCGCACTCTCATTTTATGGGTTGATTTATGCATACGAAGT
326 TATGCCTCTTCGGCTAGCTCAGCGCCCGCACTCTCATTTTATGGGTTGATTTATGCATACGAAGT
** *
18046364 TCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAAGATCGACAGTACACAGGGG
391 TCATTCCCAGTGTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAAGATCGACAGTACACAGGGG
* * *
18046429 GGGATCGGGCCGATCTTTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCACCTTCG
456 GGGAGCGGGCCGATCTCTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCACCTTCA
* *
18046494 TTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCAATAGGGACCTGGCT
521 TTCCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATGCAATAGGGACCTGGCT
18046559 GATCCCCAACTTGCACATTATGCCTCTCCGGCTGGT
586 GATCCCCAACTTGCACATTATGCCTCTCCGGCTGGT
* * * * *
18046595 TGAGCGCCTGCACACTTGTTTCATGGGTTGACTTAGGGATACGAAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACA
* ** * * ** *
18046660 TATGGAGTTCATTCCCAGTCTAAGATCGGACT-GGATTGAGGGTTGCAATAGCAGGATTGGTAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCGG-CTCGGATCAAGGGTTGCAACAGCAGGATCGACAAC
* * * *
18046724 ACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTAGCTAAGCACCTG
130 ACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTAAGCACCCG
* * * * *
18046789 CATGCTCGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
195 CACGCCCATTTCGTGGGATGCCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
** * * * ** *
18046854 TGAGGGTTGTGGCAGCGGGATTGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGCCTTGCGTA
260 CAAGGGTTGTGGCAGCGGGATTGACAACACACAGAAGGGGACCGGACCGATCCCCGCCTTGCGTA
* * *
18046919 TTATGCCTCTTCGGCTGGCTCAGCGCCCGCACTCTCATTTTGTGGGTTGATTTATGCATACGGAG
325 TTATGCCTCTTCGGCTAGCTCAGCGCCCGCACTCTCATTTTATGGGTTGATTTATGCATACGAAG
* * * *
18046984 TTCATTCCCAGTGTAAGATCAGATCAAACCGAGGGTTGTGGTAGCAGGATCGACAGTACGCAGGG
390 TTCATTCCCAGTGTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAAGATCGACAGTACACAGGG
* * ** * *
18047049 GGGGAGCGGGTCGATCTCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGTACCCTT
455 GGGGAGCGGGCCGATCTCTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCA-CCTT
*
18047114 -ATTCTGCGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
519 CATTCCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
18047163 ACGGAGTTCA
Statistics
Matches: 498, Mismatches: 68, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
621 493 0.99
622 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (621 bp):
TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAACA
TACGGAGTTCATTCCCAGTCTAAGATCGGCTCGGATCAAGGGTTGCAACAGCAGGATCGACAACA
CGCAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTAAGCACCCGC
ACGCCCATTTCGTGGGATGCCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
AAGGGTTGTGGCAGCGGGATTGACAACACACAGAAGGGGACCGGACCGATCCCCGCCTTGCGTAT
TATGCCTCTTCGGCTAGCTCAGCGCCCGCACTCTCATTTTATGGGTTGATTTATGCATACGAAGT
TCATTCCCAGTGTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAAGATCGACAGTACACAGGGG
GGGAGCGGGCCGATCTCTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGTGCCCGCACCTTCA
TTCCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATGCAATAGGGACCTGGCT
GATCCCCAACTTGCACATTATGCCTCTCCGGCTGGT
Found at i:18047169 original size:26 final size:26
Alignment explanation
Indices: 18047133--18047185 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18047123 GTTGGCTTAG
18047133 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
18047159 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18047185 G
1 G
18047186 ATTTTGAGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18049394 original size:158 final size:158
Alignment explanation
Indices: 18049140--18049439 Score: 386
Period size: 158 Copynumber: 1.9 Consensus size: 158
18049130 AAGATCGGAT
* ** * * *
18049140 CGGACCGAGGGTTGTAGCAGTAGGATCAGCAGCACATAGGGGGGACCGGGCCGATCCCCGGCTTG
1 CGGACCGAGGGTTGTAGCAGCAGGATCAGCAAAACACAGGGGGGACCGAGCCGATCCCCGGCTTA
* * * * * * * * *
18049205 TGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTATGCCCGTTTCGGGGGTTGGCTTAGGCATAG
66 CGCATTATGCCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCGGGGGTTGACTTAGGCATAC
*
18049270 GGAGTTCATTCCATGTATAATTGCTAGC
131 AGAGTTCATTCCATGTATAATTGCTAGC
* * *
18049298 CGGACCGAGGGTTGTGGCAGCAGGATCGGCAAAACGCAGAGGGGGACCGAGCCGATCCCCGGCTT
1 CGGACCGAGGGTTGTAGCAGCAGGATCAGCAAAACACAG-GGGGGACCGAGCCGATCCCCGGCTT
* * *
18049363 ACG-ATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
65 ACGCATTATGCCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCGGGGGTTGACTTAGGCATA
18049427 CAGAGTTCATTCC
130 CAGAGTTCATTCC
18049440 CAATCTAAGA
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 94 0.79
159 25 0.21
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
CGGACCGAGGGTTGTAGCAGCAGGATCAGCAAAACACAGGGGGGACCGAGCCGATCCCCGGCTTA
CGCATTATGCCTCTCCGACCGACTCAACGCCCGCACGCCCATTTCGGGGGTTGACTTAGGCATAC
AGAGTTCATTCCATGTATAATTGCTAGC
Found at i:18049604 original size:157 final size:159
Alignment explanation
Indices: 18049182--18049605 Score: 428
Period size: 157 Copynumber: 2.7 Consensus size: 159
18049172 CACATAGGGG
* * ** * * * * *
18049182 GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTATGCCCGT
1 GGACCGAGCCGATCCCCGACTT-ACCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCAT
* * * * * *
18049247 TTCGGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTAT-A-ATTGCTAGCCGGACCGAGGGT
65 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGC-AGCCAGACCAACGGT
* * *
18049310 TGTGGCAGCAGGATCGGCAAAACGCAGAGGG
129 TGCGGCAGCAGGATCGACAAAACGCAGAGGA
* * * * *
18049341 GGACCGAGCCGATCCCCGGCTTACGATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCTCATT
1 GGACCGAGCCGATCCCCGACTTACCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATT
* * * *
18049406 TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATTG-A-CCAGACTAACGGTT
66 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTGCAGCCAGACCAACGGTT
* **
18049468 GCGGTAGCAGGATCGACAGCACGCA-AGGA
130 GCGGCAGCAGGATCGACAAAACGCAGAGGA
** * * ** * *
18049497 GGATTGGGTCGATCTTCGACTTACACATTCTGCTTCTCCGGCCGGCTGAGCGCCCGCACGCTCAT
1 GGACCGAGCCGATCCCCGACTTAC-CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCAT
18049562 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
18049606 CATACGTAGT
Statistics
Matches: 216, Mismatches: 44, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
156 23 0.11
157 101 0.47
158 63 0.29
159 25 0.12
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGACCGAGCCGATCCCCGACTTACCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGCAGCCAGACCAACGGTTG
CGGCAGCAGGATCGACAAAACGCAGAGGA
Found at i:18055130 original size:158 final size:158
Alignment explanation
Indices: 18054865--18055150 Score: 441
Period size: 158 Copynumber: 1.8 Consensus size: 158
18054855 GGGGATCGAA
* *
18054865 CCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCTACATGCCCATTTTGTAG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC-ACATGCCCATTTCGTAG
*
18054930 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
65 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGC
18054995 GGGATCAGTAACACGCAGGGGAGACCAGG
130 GGGATCAGTAACACGCAGGGGAGACCAGG
* * ** *
18055024 CCGATCCCCGGCTTGTGCATTCTGCCTCTCC-AGTCGGTTGAGCACTCC-CATGCCCATTTCGTG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAGCAC-CCACATGCCCATTTCGTA
* *
18055087 GGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCA
64 GGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCA
18055151 ATGGGACTGA
Statistics
Matches: 115, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
158 75 0.65
159 38 0.33
160 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (158 bp):
CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCACATGCCCATTTCGTAGG
TTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCG
GGATCAGTAACACGCAGGGGAGACCAGG
Found at i:18055573 original size:159 final size:157
Alignment explanation
Indices: 18054929--18055601 Score: 489
Period size: 159 Copynumber: 4.2 Consensus size: 157
18054919 CCATTTTGTA
* * * * * *
18054929 GGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTGTGGCAG
* * ** * * * * * * * *
18054994 CGGGATCAGTA-A-CACGCAG-GGGAGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCA
65 CGGGA-CCG-ACAGCACGTAGAGGG-GACTGGGTCAATCCCTGGCTTGCGCATTATGCCTTTTCG
* * * * * * *
18055056 GTCGGTTGAGCACTCC-CATGCCCATTTCGTG
127 GCCGGCTCAGCGC-CCGCACGCTCGTTTCGTG
* * * * * ** *
18055087 GGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAA
1 GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTGTGGCAG
* * * * * * * *
18055152 TGGGACTGACAGCACATAGAAGGGGATTGGGTCGATACCC-GGCTTACGCATTATGCCTCTTCGA
65 CGGGACCGACAGCACGTAG-AGGGGACTGGGTCAAT-CCCTGGCTTGCGCATTATGCCTTTTCGG
* *
18055216 CCGGCTCAGTGCCCGCACGCTCGTTTTGTG
128 CCGGCTCAGCGCCCGCACGCTCGTTTCGTG
* ** *
18055246 GGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGT
1 GGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-TCGGA-CGAGGGTTGTGGC
* * * * * * * * * *
18055309 AGTC-AGATCGACAGCATGCAGGGGGGACCGGGCCAATCCCTGGCTTGCACATTCTGCCTTTCCG
63 AG-CGGGACCGACAGCACGTAGAGGGGACTGGGTCAATCCCTGGCTTGCGCATTATGCCTTTTCG
* * * *
18055373 GCCGGCTGAGCGCCCGTACGCTTGTTTCGTA
127 GCCGGCTCAGCGCCCGCACGCTCGTTTCGTG
* ** *
18055404 GGTTGGCTTAGGCATACGGGGTTCATTCCATGTCTAAGCCCCAGTCGGACGGAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-GAGGGTTGTGGCAG
* **
18055469 CGGGACCAACAAAACGTAGAGGAGGACTGGGTCAATCCCTGGCTTGCGCATTATGCCTTTTCGGC
65 CGGGACCGACAGCACGTAGAGG-GGACTGGGTCAATCCCTGGCTTGCGCATTATGCCTTTTCGGC
** * **
18055534 TAGCTCAGCACCCGCATACTCGTTTCGTG
129 CGGCTCAGCGCCCGCACGCTCGTTTCGTG
* *
18055563 GGTTGACTTAGGCATACGAAGTTCATCCCAAGTCTAAGC
1 GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGC
18055602 ATACAGAGTT
Statistics
Matches: 401, Mismatches: 99, Indels: 29
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 11 0.03
158 187 0.47
159 193 0.48
160 9 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACGAGGGTTGTGGCAGC
GGGACCGACAGCACGTAGAGGGGACTGGGTCAATCCCTGGCTTGCGCATTATGCCTTTTCGGCCG
GCTCAGCGCCCGCACGCTCGTTTCGTG
Found at i:18055605 original size:26 final size:26
Alignment explanation
Indices: 18055574--18055626 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
18055564 GTTGACTTAG
18055574 GCATAC-GAAGTTCA-TCCCAAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
18055600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18055626 G
1 G
18055627 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18061876 original size:26 final size:26
Alignment explanation
Indices: 18061846--18061898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18061836 GTTGACTTAG
18061846 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
18061872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
18061898 G
1 G
18061899 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:18062551 original size:25 final size:25
Alignment explanation
Indices: 18062517--18062564 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
18062507 GTTGACTTAG
*
18062517 GCATATGGAGTTCA-TCCCTAGTCAA
1 GCATACGGAGTTCATTCCC-AGTCAA
18062542 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
18062565 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:18062811 original size:669 final size:670
Alignment explanation
Indices: 18061648--18063399 Score: 1912
Period size: 669 Copynumber: 2.6 Consensus size: 670
18061638 CGTGACACCT
* * * *
18061648 GCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATATCTAAGTCCCAGCTGGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC-GGA
* * * * * * *
18061713 CCGACGGTTGTGGTAGCAGAATCGATAG-GAGGATCGACAGCACGTAGAGGAGGATCGAGCTGAT
65 CCGAGGGTTGTGGCAGCAGGACCGACAGCG-GGATCGACAGCACGTAGAGGGGGACCGAGCTGAT
* *
18061777 CCCCGACTTGTGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCACGTTTCATGGGTTGAC
129 CCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCACATTTCATGGGTTGAC
*
18061842 TTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC
194 TTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
* * *
18061907 AGATCGAGGGTTGCGGCAGCAGGATCAACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGT
259 AGACCGAGGGTTGAGGCAGCAGGATCAACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGC
* * * *
18061972 GCATTCTACCTCTCCGGCAGGTTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
324 GCATTCTACCTCTCCGACAGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
* * * * *
18062037 GAGCTCATTCCATGTCTAAGCCCTAGCCGGACTGAAGGTTGTGGCAGCGGGACCTGTAGCACGCA
389 GAGCTCATTCCATGTCTAAGCCCCAGCCGGACTCAAGGTTGTGGCAGCGGGACCGGCAACACGCA
* * *
18062102 AAGGGAGATCGAGTCGATCCCCGACTTGTGCATTATGCCTCTCCGGCCCGTTCAGCACCCGAACA
454 AAGGGAGATCGAGCCGATCCCCGACTTATGCATTATGCCTCTCCGGCCCGCTCAGCACCCGAACA
* * * *
18062167 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTAACATC-GAACCAGACCGA
519 CTCATTTCATGGGTTGACTTAGACATACAGAGTTCATACCCAGTCTAACATCAG-ACCAGACCGA
* * * *
18062231 GTGTTACGATAGCAAGATCGACAACACGCAGTGGGGA-CTGGGTCGGTCCCTGGCTTGCGCATTC
583 GTGTTACGACAGCAAGATCGACAACACGCAGGGGGGATC-GGAT-GGTCCCCGGCTTGCGCATTC
* * *
18062295 TGCCTCTCCAG-TCGGTTGAGTGCCC
646 TACCTCT-CAGATCGGCTGAGCGCCC
*
18062320 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CGGA
* * * * *
18062385 CCAAGGGTTATGGCAGCAGGACCGACAGCGGGATTGTCAGCACGCAGAGGGGGACCGAGCTGATC
65 CCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTGATC
* * * * *
18062450 CCCGACTTGCGCATTATGCCTCTCCG-GCGGCTGAGTGCCCGTATGCTCATTTCGTGGGTTGACT
130 CCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCACATTTCATGGGTTGACT
*** * ** *
18062514 TAGGCATATGGAGTTCATCCCTAGTC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
195 TAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
** * * *
18062578 GACCGAGGGTT-AGGCAG-ATGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGC
260 GACCGAGGGTTGAGGCAGCA-GGATCAACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGC
* * ** *
18062641 GCATTCTACCTCTCCGACTGGCTGATTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAGG
324 GCATTCTACCTCTCCGACAGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
* * *
18062706 GAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-CAAGGGTTGTGGTAGCGGGACCGGCAACACGC
389 GAGCTCATTCCATGTCTAAGCCCCAGCCGGACTCAA-GGTTGTGGCAGCGGGACCGGCAACACGC
** * * * ** ** *
18062770 AGGGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGAAT
453 AAAGGGAGATCGAGCCGATCCCCGACTTATGCATTATGCCTCTCCGGCCCGCTCAGCACCCGAAC
* * * * * *
18062835 GCTCATTTCATGGGTTGACTTAGACATACGGAGTTTATACCCAGTCTAAGATCAGACTAGACTGA
518 ACTCATTTCATGGGTTGACTTAGACATACAGAGTTCATACCCAGTCTAACATCAGACCAGACCGA
* * ** * *
18062900 GTGTTGCGGCAGCACTATCGATAGCACGCAGGGGGGATCGGATGGTCCCCGGCTTGCGCATTCTA
583 GTGTTACGACAGCAAGATCGACAACACGCAGGGGGGATCGGATGGTCCCCGGCTTGCGCATTCTA
* *
18062965 CCTCTCTGATCGGCTGAGCGCCT
648 CCTCTCAGATCGGCTGAGCGCCC
* *
18062988 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGAA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CGGA
* * * *
18063053 CCGAGGGTTGTGGCAGTAGGACCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCG-GATTGAT
65 CCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAG-CTGAT
* * * ** *
18063117 CCTCGGCTTGCGCATTATGCCT-TCCCGACCGGCCTCTCCAGCTGGCTGAGCACCCACACGCTCG
129 CCCCGACTTGCGCATTATGCCTCT-CCGACCGG---CT-GAG-T-GC-CCGCACGCACA---T--
* ** * *
18063181 TT-TTGTGAGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
181 TTCATG-G-GTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** * * * * * * * * *
18063245 GTCTAAGATCATACTGGACCAAAGTTTGTGGTAGCACG-T----AG---A-A--GGGGACCGAGT
244 GTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCAACAGCACACAGGGGGGATCGGGC
* * * * * * * *
18063299 CGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGGCTGGGCGCCCGCACGCTCGTTTCATGGGT
309 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACAGGCTGAGTGCCCGCACGCCCGTTTCATGGGT
*
18063364 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
374 TGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGC
18063400 ATATGGAGTT
Statistics
Matches: 907, Mismatches: 146, Indels: 53
0.82 0.13 0.05
Matches are distributed among these distances:
667 4 0.00
668 176 0.19
669 292 0.32
670 46 0.05
671 54 0.06
672 136 0.15
673 103 0.11
674 1 0.00
675 3 0.00
676 5 0.01
679 3 0.00
680 2 0.00
681 3 0.00
682 30 0.03
683 43 0.05
684 5 0.01
685 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (670 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCGGAC
CGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTGATCC
CCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCACATTTCATGGGTTGACTT
AGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG
ACCGAGGGTTGAGGCAGCAGGATCAACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGC
ATTCTACCTCTCCGACAGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
GCTCATTCCATGTCTAAGCCCCAGCCGGACTCAAGGTTGTGGCAGCGGGACCGGCAACACGCAAA
GGGAGATCGAGCCGATCCCCGACTTATGCATTATGCCTCTCCGGCCCGCTCAGCACCCGAACACT
CATTTCATGGGTTGACTTAGACATACAGAGTTCATACCCAGTCTAACATCAGACCAGACCGAGTG
TTACGACAGCAAGATCGACAACACGCAGGGGGGATCGGATGGTCCCCGGCTTGCGCATTCTACCT
CTCAGATCGGCTGAGCGCCC
Found at i:18063039 original size:157 final size:157
Alignment explanation
Indices: 18062604--18063082 Score: 435
Period size: 159 Copynumber: 3.0 Consensus size: 157
18062594 GATGGATCGG
* *
18062604 CAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGACTGGCTGATTG
1 CAGCACGCAGGGGGGATCGGAT-GATCCTCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGTG
* * * *
18062669 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * ** *
18062734 GGACCAAGGGTTGTGGTAGCGGGACCGG
130 AGACCAAGGGTTGCGGCAGCACGACCGA
* ** ** * * * *
18062762 CAACACGCAGGGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGCTGGCTCAGT
1 CAGCACGCA-GGGGGGATCG-GATGATCCTCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGT
* * * * * * * *
18062827 GCCCGAATGCTCATTTCATGGGTTGACTTAGACATACGGAGTTTATACCCA-GTCTAAG-ATCAG
64 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACCAG
** * * *
18062890 ACTAGACTGAGTGTTGCGGCAGCACTATCGA
128 AC-AGACCAAGGGTTGCGGCAGCACGACCGA
* * * * *
18062921 TAGCACGCAGGGGGGATCGGATGGTCCCCGGCTTGCGCATTCTACCTCTCTGA-TCGGCTGAGCG
1 CAGCACGCAGGGGGGATCGGATGATCCTCGGCTTGCGCATTCTACCTCTCCGACT-GGCTGAGTG
* * *
18062985 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAG-C
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * * * *
18063049 CGAACCGAGGGTTGTGGCAGTAGGACCGG
130 AG-ACCAAGGGTTGCGGCAGCACGACCGA
18063078 CAGCA
1 CAGCA
18063083 GGATCGACAG
Statistics
Matches: 245, Mismatches: 68, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
156 5 0.02
157 98 0.40
158 25 0.10
159 113 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CAGCACGCAGGGGGGATCGGATGATCCTCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGTGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACA
GACCAAGGGTTGCGGCAGCACGACCGA
Found at i:18063238 original size:26 final size:26
Alignment explanation
Indices: 18063199--18063251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18063189 GTTGACTTAG
18063199 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * *
18063225 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
18063251 G
1 G
18063252 ATCATACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:18064622 original size:159 final size:157
Alignment explanation
Indices: 18064129--18064623 Score: 415
Period size: 159 Copynumber: 3.1 Consensus size: 157
18064119 AAGCATACAA
* * ** *
18064129 AGTTCATT-CCTAGTGTAAGATC-GAACGGACCGAGGGTTGCAACAATAGGATCGGCAGCACGCA
1 AGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCA
* * * * * * *
18064192 GGGGGGACTAAGCCGTTCCTCGACTTGCGCATTCTGCCTCTCCGATCGATTGAGTGCCCACACGC
65 -GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
* * *
18064257 CCGTTCCATGGGTTGGCTTAGGCATAGGGG
129 TCGTTTCATGGGTTGGCTTAGGCATA-CGG
* * ** * **** * *
18064287 AGTTCATTCCATGTCTAGGCCCCA-ACTGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCA
1 AGTTCATTCCCTGTCTAAG-ATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCA
* * * * * * ** *
18064351 GAGTGGGATC-GAGCCGATCCCCGACTTGCACATTATGCCTTTCCGA-CCAGCTCAGCGCTTGAA
65 G-G-GGGACCAG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGA-CTGAGCGCCCGCA
* ** ** *
18064414 TGCTCGTTTTGTGGGTTCACTTAGGCATACGA
126 CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
** * *
18064446 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCACCAGCAGGATCGACAGCATGCAG
1 AGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAG
* * * *
18064511 GGGAGCACCAGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCCGATTGACTGAACGCCCGCACGC
66 GGG-G-ACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
*
18064576 TCATTTCATGGGTTGGCTTAGGCATACGG
129 TCGTTTCATGGGTTGGCTTAGGCATACGG
18064605 AGTTCATTCCCTGTCTAAG
1 AGTTCATTCCCTGTCTAAG
18064624 CATACGGAGT
Statistics
Matches: 248, Mismatches: 77, Indels: 23
0.71 0.22 0.07
Matches are distributed among these distances:
157 2 0.01
158 18 0.07
159 165 0.67
160 63 0.25
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAG
GGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGG
Found at i:18064627 original size:26 final size:25
Alignment explanation
Indices: 18064597--18064649 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
18064587 GTTGGCTTAG
*
18064597 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
18064623 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
18064648 GC
1 GC
18064650 CCCATCCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:18064842 original size:26 final size:26
Alignment explanation
Indices: 18064806--18064855 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18064796 GTTGACTTAG
18064806 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
18064832 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
18064856 GAGATCGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18065343 original size:26 final size:26
Alignment explanation
Indices: 18065307--18065359 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18065297 GTTGGCTTAG
*
18065307 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
18065333 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
18065359 G
1 G
18065360 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:18066068 original size:26 final size:26
Alignment explanation
Indices: 18066031--18066083 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18066021 GTTGACTTAG
*
18066031 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18066057 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18066083 G
1 G
18066084 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18066344 original size:159 final size:159
Alignment explanation
Indices: 18066128--18066559 Score: 612
Period size: 159 Copynumber: 2.7 Consensus size: 159
18066118 GACAGCACGT
* * * * ** * *
18066128 AGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAACTAAGCGCCCGCATGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGC
* * * * * * *
18066193 CCGTTTCGTGGGTTCGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGTCCCAGTCGGACCGAGG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGAACCGAGG
*
18066258 GTTGTGGCAGCGGGACCGGTAGCACGTAG
131 GTTGTGGCAGCGGGACCGGTAGCACGCAG
* * * * * *
18066287 AGGGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTGAGCGCCCCCACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGC
18066352 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGAACCGAGG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGAACCGAGG
*
18066417 GTTGTGGTAGCGGGACCGGTAGCACGCAG
131 GTTGTGGCAGCGGGACCGGTAGCACGCAG
* * *
18066446 AGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGTAAGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGC
* *
18066511 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGC
18066560 GTACGGAGTT
Statistics
Matches: 240, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
159 240 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGC
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGAACCGAGG
GTTGTGGCAGCGGGACCGGTAGCACGCAG
Found at i:18066584 original size:26 final size:26
Alignment explanation
Indices: 18066535--18066584 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
18066525 GGCTTAGGCA
* *
18066535 TACGGAGTTCATTCTATGTCTAAGCG
1 TACGGAGTTCATTCCATGTATAAGCG
18066561 TACGGAGTTCATTCCCA-GTATAAG
1 TACGGAGTTCATT-CCATGTATAAG
18066585 ATTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTATAAGCG
Found at i:18067281 original size:26 final size:26
Alignment explanation
Indices: 18067252--18067304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18067242 GTTGACTTAG
18067252 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18067278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18067304 G
1 G
18067305 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18067695 original size:26 final size:26
Alignment explanation
Indices: 18067645--18067697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18067635 GTTGACTGAG
*
18067645 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
18067671 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18067697 G
1 G
18067698 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18068012 original size:158 final size:157
Alignment explanation
Indices: 18067671--18068031 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 157
18067661 CCCAGTCTAA
** * * * * ** *
18067671 GCATACGGAGTTCATTCTCA-ATCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGA-TCGG
1 GCATACGGAGTTCATTC-CATATCTAA-CCCCAACCGGACCGAGGGTAGTGGCAGCGGGACT-GA
* * * *
18067734 CAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGACCGACTGAGCA
63 CAGCACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGACAGACTAAGCA
* * * *
18067799 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACACCCGTTTCGTCGCTTGGCTTAG
* ** *
18067829 GCATAGGGAGTTCATTTGATATCTAAGCCCCAACCGGATCGAGGGTAGTGGCAGCGGGACTGACA
1 GCATACGGAGTTCATTCCATATCTAA-CCCCAACCGGACCGAGGGTAGTGGCAGCGGGACTGACA
* * * *
18067894 GCACGTAGAGGGGGATCAGGCCGATCCTCGGCTTG-TGTATTCTACCTCTCGGTCAG-CTAAGCA
65 GCACGTAG-GGGGGATCAGGCCGATCCCCGGCTTGCT-CATTCTACCTCTCCGACAGACTAAGCA
**
18067957 CCCGCACACTTGTTTCGTCGCTTGGCTTAG
128 CCCGCACACCCGTTTCGTCGCTTGGCTTAG
* * *
18067987 GCATACGGAGTTCATTCCATGTCTAATCCCAGCCGGACCGAGGGT
1 GCATACGGAGTTCATTCCATATCTAACCCCAACCGGACCGAGGGT
18068032 TATGGCAACA
Statistics
Matches: 165, Mismatches: 34, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
157 17 0.10
158 109 0.66
159 39 0.24
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATATCTAACCCCAACCGGACCGAGGGTAGTGGCAGCGGGACTGACAG
CACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGACAGACTAAGCACCC
GCACACCCGTTTCGTCGCTTGGCTTAG
Found at i:18068464 original size:159 final size:158
Alignment explanation
Indices: 18067712--18068645 Score: 487
Period size: 158 Copynumber: 5.9 Consensus size: 158
18067702 AACCGGACCG
* * * * * * * * * * *
18067712 AGGGTTGCGACAGTAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCTCATTC
1 AGGGTTGTGACAGCAGGATAGACAACACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
* * * * * * *
18067777 TGCCTCTCCGACCGACTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* ** * * * *
18067842 ATTTGATATCTAAGCCCCAACCGGA-TCG
131 AATCCATGTCTAAGCCCCAATCAGACT-A
* * * * * * * * * * *
18067870 AGGGTAGTGGCAGCGGGACT-GACAGCACGTAGAGGGGGATCAGGCCGATCCTCGGCTTGTGTAT
1 AGGGTTGTGACAGCAGGA-TAGACAACACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCAT
* * * * * * * * * * *
18067934 TCTACCTCTCGGTC-AGCTAAGCACCCGCACACTTGTTTCGTCGCTTGGCTTAGGCATACGGAGT
64 TATGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * ** * **
18067998 TCATTCCATGTCTAA-TCCCAGCCGGACCG
129 TCAATCCATGTCTAAGCCCCAATCAGACTA
* * * * * * * *
18068027 AGGGTTATGGCAACAGGACAGGCAGCACACAGAGGGGGACCGGGTCGAT-CCCGACTTGCGCATT
1 AGGGTTGTGACAGCAGGATAGACAACACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * * * * * *
18068091 ATGCCTCTCCG-GTCGACTCAACGA-CTGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
65 ATGCCTCTCCGACT-GGCTCAGC-ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* ***** * **
18068154 TTCATTCC-TAGTCTAAGATAGGA-CTGGACCG
128 TTCAATCCAT-GTCTAAGCCCCAATC-AGACTA
* * * * * * * * * * *
18068185 AGGGTTGCTG-CAGTAGGATCGATAGCATGCAGGGGGGACCAGGTCAATCCTCGGCTTGCGCATT
1 AGGGTTG-TGACAGCAGGATAGACAACACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * * * * * * *
18068249 CTGCCTCTCCGGCCT--TTGAACGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 ATGCCTCTCC-GACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * *
18068312 TTAGTCCATGTCTAAGCCCCAA-CAAGACTG
129 TCAATCCATGTCTAAGCCCCAATC-AGACTA
* * * * *
18068342 AGGGTTGTGGCAG-AGAGACTAG-TAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTA
1 AGGGTTGTGACAGCAG-GA-TAGACAACACGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCA
* ** * * *
18068405 TTATGCCTCTTCGACTGGCTCAGCGTCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAG
63 TTATGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* ** *
18068470 TTCATTCC-TAGTCTAAGATCGAATCAGACTA
128 TTCAATCCAT-GTCTAAGCCCCAATCAGACTA
* * * * * *
18068501 AGGGTTGTGATAGCAGGATCGACAACACGCAAGGGGGATCGGGCTGATCCCCGACTTGTGCATTC
1 AGGGTTGTGACAGCAGGATAGACAACACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
* *
18068566 TGCCTCTCCGACTGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
18068631 AATCCATGTCTAAGC
131 AATCCATGTCTAAGC
18068646 ATACGGAGTT
Statistics
Matches: 595, Mismatches: 154, Indels: 54
0.74 0.19 0.07
Matches are distributed among these distances:
156 24 0.04
157 187 0.31
158 260 0.44
159 120 0.20
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGTTGTGACAGCAGGATAGACAACACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
TGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
AATCCATGTCTAAGCCCCAATCAGACTA
Found at i:18068507 original size:316 final size:315
Alignment explanation
Indices: 18067978--18068645 Score: 749
Period size: 316 Copynumber: 2.1 Consensus size: 315
18067968 GTTTCGTCGC
* * * **
18067978 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-TCCCAGCCGGACCGAGGGTTATGGCAACA
1 TTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCCCCAACAAGACCGAGGGTTATGGCAACA
* *
18068042 GGACAGGCAGCACACAGAGGGGGACCGGGTCGATCCCGACTTGCGCATTATGCCTCTCCGGTCGA
66 GGACAGGCAGCACACAGAGGGGGACCGGGCCGATCCCGACTTGCGCATTATGCCTCTCCGCTCGA
* *
18068107 CTCAACGACTGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGA
131 CTCAACGACCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGA
* * * * * * * * *
18068172 TAGGACTGGACCGAGGGTTGCTG-CAGTAGGATCGATAGCATGCAGGGGGGACCAGG-TCAATCC
196 TAGAACTAGACCAAGGGTTG-TGACAGCAGGATCGACAACACGCAAGGGGGACCGGGCT-AATCC
* * * * * * *
18068235 TCGGCTTGCGCATTCTGCCTCTCCGGCCT-TTGAACGCCCGTACGCCCGTTTCATGGG
259 CCGACTTGCGCATTCTGCCTCTCC-GACTGCTGAACACCCGCACGCCCATTTCATGGG
* * * * * *
18068292 TTGGCTTAGGCATAGGGAGTTTAGTCCATGTCTAAGCCCCAACAAGACTGAGGGTTGTGGC-AGA
1 TTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCCCCAACAAGACCGAGGGTTATGGCAACA
* * * * *
18068356 GAGACTA-GTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGAC
66 G-GAC-AGGCAGCACACAGAGGGGGACCGGGCCGAT-CCCGACTTGCGCATTATGCCTCTCCG-C
* * * * * *
18068420 T-GGCTCAGCGTCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCT
127 TCGACTCAACGACCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCT
* * * * *
18068484 AAGATCGAA-TCAGACTAAGGGTTGTGATAGCAGGATCGACAACACGCAAGGGGGATCGGGCTGA
192 AAGATAGAACT-AGACCAAGGGTTGTGACAGCAGGATCGACAACACGCAAGGGGGACCGGGCTAA
* * *
18068548 TCCCCGACTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCTCATTTCATGGG
256 TCCCCGACTTGCGCATTCTGCCTCTCCGACT-GCTGAACACCCGCACGCCCATTTCATGGG
18068609 TTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGC
1 TTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGC
18068646 ATACGGAGTT
Statistics
Matches: 292, Mismatches: 52, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
314 35 0.12
315 53 0.18
316 146 0.50
317 58 0.20
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (315 bp):
TTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCCCCAACAAGACCGAGGGTTATGGCAACA
GGACAGGCAGCACACAGAGGGGGACCGGGCCGATCCCGACTTGCGCATTATGCCTCTCCGCTCGA
CTCAACGACCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGA
TAGAACTAGACCAAGGGTTGTGACAGCAGGATCGACAACACGCAAGGGGGACCGGGCTAATCCCC
GACTTGCGCATTCTGCCTCTCCGACTGCTGAACACCCGCACGCCCATTTCATGGG
Found at i:18068647 original size:26 final size:26
Alignment explanation
Indices: 18068618--18068670 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18068608 GTTGGCTTAG
18068618 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
18068644 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
18068670 G
1 G
18068671 ATTTTGAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:18069667 original size:159 final size:157
Alignment explanation
Indices: 18069452--18069868 Score: 503
Period size: 159 Copynumber: 2.6 Consensus size: 157
18069442 GGGATCGAGC
* * *
18069452 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACAGACTGAGCGCCCGCACACCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGAC-GGCTGAGCGCCCGCAC-GCCGTTTCGTGGGT
*** * * * *
18069517 TCATTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGTCGGACCGAGGGTTATGGCAGCG
64 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCC-AGCCGGACAGAGAGTTATGGCAACG
* * **
18069581 GGACCGGCAGCACGTAGAGAGGGACCGGGT
128 GGACCGACAACACACAGAGAGGGACCGGGT
* * * * *
18069611 CGATCCCCGACTTGCGCATTATTCCTCTCCGATCGGCTGAGCGTCCTCACGGCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CGGCTGAGCGCCCGCAC-GCCGTTTCGTGGGT
** *
18069676 TGGCTTAGGCATAGGGAGTTCATTCTGTGTCTAAGACCCAGCCGGACAGAGAGTTGTGGCAACGG
64 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGGACAGAGAGTTATGGCAACGG
*
18069741 GACCGACAACACACAGAGGGGGACCGGGT
129 GACCGACAACACACAGAGAGGGACCGGGT
* * * * *
18069770 CGATCCCCGGCTTGCGTATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCC-GACGGCTGAGCGCCCGCACGC-CGTTTCGTGGGT
*
18069835 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
18069869 ACGTACGGAG
Statistics
Matches: 218, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
158 2 0.01
159 211 0.97
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTCCGACGGCTGAGCGCCCGCACGCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGGACAGAGAGTTATGGCAACGGGA
CCGACAACACACAGAGAGGGACCGGGT
Found at i:18070869 original size:184 final size:183
Alignment explanation
Indices: 18070540--18070889 Score: 479
Period size: 184 Copynumber: 1.9 Consensus size: 183
18070530 TGGTCCGTCA
* * * *
18070540 AGCGCCCAACGCTCGTTTTGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAT
1 AGCGCCCAACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
* *
18070605 AGAGGTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGTAGGATCGGTAGCACGC
66 AGAGGTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAGTAGGATCGGCAGCACGC
* * *
18070670 AGGGGTGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTTTTCGGTCGACTG
131 AGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGGTCGACTG
* * *
18070723 AGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCAT
1 AGCGCCCA-ACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATCCCCA-GTCTAAGCAT
* * * ** * *
18070787 ACGGAGTTCATTCCCAGTCTTAGATCAGATTGGATCGAGGGTTAC-GACAGTAGGATCTGCATCA
64 ACAGAGGTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAG-CAGTAGGATCGGCAGCA
*
18070851 CGTAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCT
128 CGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCT
18070890 ACCTCTCTGG
Statistics
Matches: 144, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 12 0.08
184 132 0.92
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (183 bp):
AGCGCCCAACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
AGAGGTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAGTAGGATCGGCAGCACGC
AGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTTTTCGGTCGACTG
Found at i:18070909 original size:13 final size:13
Alignment explanation
Indices: 18070891--18070922 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
18070881 GCGCATTCTA
18070891 CCTCTCTGGCTGG
1 CCTCTCTGGCTGG
*
18070904 CCTCTCTGGTTGG
1 CCTCTCTGGCTGG
18070917 CCTCTC
1 CCTCTC
18070923 CGACCGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.41, G:0.25, T:0.34
Consensus pattern (13 bp):
CCTCTCTGGCTGG
Found at i:18071626 original size:158 final size:160
Alignment explanation
Indices: 18070993--18071643 Score: 533
Period size: 159 Copynumber: 4.1 Consensus size: 160
18070983 CCCAGTCTAA
* ** * * * *
18070993 GCATATGGAGTTCATTCCCAGTCTAAGATCGAGCTGGATCGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGATCGAGGGTTGC-GCAGCAGGATCGACA
* * * **
18071058 GCACGCAG-GAGGGACCGGG-CTGATCCCCAGCTTGTGCATTCTGCCTCT-CGGGTCGACTGAGC
65 GCACGCAGAGGGGGACCGGGTCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACTCGACTGAGC
* * * *
18071120 GTCCGCACGCCCGTTTTGTGGGTTGGCTTAG
130 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
18071151 GAATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGG-TCCTAGGGTTGTGGCAGTGGGA-CTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGAT-CGAGGGTTG-CGCAGCAGGATC-GA
* * * * * *
18071214 CAGCACGCAGAGGGGGATC-GGACTGATCCCCGACTTGCGCATTCTGCCTCTCC-AGTCGTCTAA
63 CAGCACGCAGAGGGGGACCGGGTCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACTCGACTGA
* *
18071277 GCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
128 GCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * *
18071310 GCATACAGAGTTGATT-TCATGTCTAAGCCCCAGCCGGACCGAGGATTATG-GCAACAAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGATCGAGG-GT-TGCGCAGCAGGATCGA
* * * * * * *
18071373 CAGCACACAGAGGGGGACCGGGTC-GATCCCTAGCTTACGCATTATGCCTCTCCGGCT-GACTCA
63 CAGCACGCAGAGGGGGACCGGGTCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACTCGACTGA
* *
18071436 GCGGCCGA-ACGCTCGTTTCGTGGGTTGACTTAG
128 GC-GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
18071469 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGATCGAGGGTTGCGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGATCGAGGGTTGCGCAGCAGGATCGACA
* * * * * *
18071533 GCACGCA-AGATGAGATCGGGTC-GGTCCCCAACTTGTGCATTCTGCCTCTCCGACT-GGCTGAG
65 GCACGCAGAG-GGGGACCGGGTCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACTCGACTGAG
*
18071595 TGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
*
18071627 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
18071644 AATGTCTAAG
Statistics
Matches: 387, Mismatches: 87, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.03
158 155 0.40
159 208 0.54
160 12 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGATCGAGGGTTGCGCAGCAGGATCGACAG
CACGCAGAGGGGGACCGGGTCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACTCGACTGAGCG
CCCACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18071723 original size:12 final size:12
Alignment explanation
Indices: 18071703--18071732 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18071693 GAGGGTTGCA
*
18071703 GCAGTAGGATCG
1 GCAGCAGGATCG
18071715 GCAGCAGGATCG
1 GCAGCAGGATCG
18071727 GCAGCA
1 GCAGCA
18071733 TGCAAGGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.23, G:0.40, T:0.10
Consensus pattern (12 bp):
GCAGCAGGATCG
Done.