Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 129 of 138
Found at i:18072158 original size:158 final size:158
Alignment explanation
Indices: 18071860--18072207 Score: 418
Period size: 158 Copynumber: 2.2 Consensus size: 158
18071850 ATCCCCAGTC
** ** * *
18071860 TAAGCATACAGAGTTCATTCCCA-GTCTAAGATCTAACCGGACGGAGGGTTGCTGTAATAGGATC
1 TAAGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGCTGTAATAGGATC
* * * * * ***
18071924 GGTAGCACGTAGTGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGGCCAGCTGAG
65 GGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAG
*
18071989 CGCCCACACGCCCATTTCATGGGTTGGCT
130 CACCCACACGCCCATTTCATGGGTTGGCT
* *
18072018 TAAGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG-TGTCAATGGGA-C
1 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGCTGT-AATAGGATC
* *
18072081 TGGCAGCACGCAGAGGGGGACCG-GATCGATCCCCGGCTTGCGTATTCTACCTCTCCAACC-GCT
65 -GGCAGCACGCAG-GGGGGACCGAG-CCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCT
* *
18072144 GAGCACCCGCACGCCCATTTCGTGGGTTGGCT
127 GAGCACCCACACGCCCATTTCATGGGTTGGCT
*
18072176 TAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TAAGCATAGGGAGTTCATTCCATGTCTAAGCC
18072208 TTAGCTAGAC
Statistics
Matches: 162, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 7 0.04
158 119 0.73
159 36 0.22
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGCTGTAATAGGATCG
GCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCAGCTGAGC
ACCCACACGCCCATTTCATGGGTTGGCT
Found at i:18072224 original size:158 final size:157
Alignment explanation
Indices: 18071948--18072525 Score: 500
Period size: 158 Copynumber: 3.6 Consensus size: 157
18071938 GGGACCGAGC
* *** * *
18071948 CGATCCCCGGCTTGCGCATTTTGCCTCTCTGGCCAGCTGAGCGCCCACACGCCCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAACC-GCTGAGCGCCCGCACGCCCATTTCGTGGGT
* * ** * * * *
18072013 TGGCTTAAGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGTCAATGG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAGACCAAGGGTTGTGGCAATGG
*
18072078 GACTGGCAGCACGCAGAGGGGGACCGGAT
130 GA-TGGCAGCACGCAGAGGGGGATCGGAT
* * *
18072107 CGATCCCCGGCTTGCGTATTCTACCTCTCCAACCGCTGAGCACCCGCACGCCCATTTCGTGGGTT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCTGAGCGCCCGCACGCCCATTTCGTGGGTT
* * *
18072172 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCTAGACCAAGGGTTGTGGCAGTGAG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAGACCAAGGGTTGTGGCAATGGG
* * * *
18072237 ATCGGTAGCACACAGAGGGTGATC-GAGC
131 AT-GGCAGCACGCAGAGGGGGATCGGA-T
* * * * * * * * *
18072265 CAATCCTCGACTTGCGCATTATGCCTCTCCAGTA-GGCTCAACGCCCGAACGCTCATTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCA--ACCGCTGAGCGCCCGCACGCCCATTTCGTGGG
* * * * * *
18072329 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAAACTAAGGGCTTGTGGCA
64 TTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCTTAG-CCAGACCAAGGG-TTGTGGCA
* * * * *
18072392 CTTGGATTGACAGCACGCAGGGGGGGATCGGGT
126 ATGGGA-TGGCAGCACGCAGAGGGGGATCGGAT
* ** ** * * * *
18072425 GGATCCTTGGCTTGCGCATTCTGCCTCTCCGGCTTGCTGAGCGCCCGCATGCTC-GTTCGGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAAC-CGCTGAGCGCCCGCACGCCCATTTC-GTGGG
* **
18072489 TTGGATTAGGCATATAGAGTTCATTCCATGTCTAAGC
64 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18072526 ATACGGAGTT
Statistics
Matches: 334, Mismatches: 71, Indels: 26
0.77 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 128 0.38
159 97 0.29
160 104 0.31
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCTGAGCGCCCGCACGCCCATTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAGACCAAGGGTTGTGGCAATGGG
ATGGCAGCACGCAGAGGGGGATCGGAT
Found at i:18072527 original size:26 final size:26
Alignment explanation
Indices: 18072498--18072550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18072488 GTTGGATTAG
*
18072498 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
18072524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18072550 G
1 G
18072551 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18074075 original size:159 final size:159
Alignment explanation
Indices: 18073923--18074277 Score: 391
Period size: 158 Copynumber: 2.2 Consensus size: 159
18073913 ATTTCGTGCA
* * **
18073923 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATTGAGGATTGTGGCAG-
1 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGATTGTGGCAGC
* * * * * * *
18073986 TGAGATCGGTAGCACGCAGAGGGGGGTCGGG-CTGATCCCCGGCTTGCGT-ATTATGCCTCTTCG
66 AG-GATCAGCAGCACGCAG-GGGGGATCGGGTC-GATCCCCAGCTTAC-TCATTATACCTCTTCG
* *
18074049 ACTTG-CTCAGCGCCCGAACGCTCATTTCATGGG
127 A-TCGACTCAGCGCCCGAACACTCATTTCATGGG
** *** *
18074082 TTGATTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATTGGACCAGACCGAGGGTTGTGGCAG
1 TTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGATTGTGGCAG
* * *
18074145 CAGGATCAGCAGCACGTAGGGGGGATCGGGTCGGTCCCCAGCTTACTCATTCTACCTCTTCGATC
65 CAGGATCAGCAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTACTCATTATACCTCTTCGATC
* *
18074210 GACTGAGCGCCCGCACACTCATTTCATGGG
130 GACTCAGCGCCCGAACACTCATTTCATGGG
18074240 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
18074278 TACAGAGTTA
Statistics
Matches: 162, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.02
158 93 0.57
159 65 0.40
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGATTGTGGCAGC
AGGATCAGCAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTACTCATTATACCTCTTCGATCG
ACTCAGCGCCCGAACACTCATTTCATGGG
Found at i:18074494 original size:26 final size:26
Alignment explanation
Indices: 18074458--18074510 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18074448 GTTGACTTAG
*
18074458 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAATCTAA
*
18074484 GCATATGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
18074510 G
1 G
18074511 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:18074774 original size:159 final size:158
Alignment explanation
Indices: 18074559--18075145 Score: 635
Period size: 159 Copynumber: 3.7 Consensus size: 158
18074549 GCACGCAGGA
* * * * *
18074559 GGGATC-GGCCTGATCCCCGGCTTGTGCATTTTGCCTCTACGGTCGGCTGAGAGCCCGCACG-TC
1 GGGATCGGGCC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCT-
* *
18074622 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGTCGGACCGAGGG
64 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC-CAGTCGGATCGAGGG
**
18074687 TTGTGGCAGCGGGTCCGGCAACATGCAGAGG
128 TTGTGGCAGCGGGTCCGGCAACAAACAGAGG
* * *
18074718 GGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCG
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
* * *
18074783 TTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTGGATCGAGGGTT
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGTCGGATCGAGGGTT
* * *
18074848 ATGGCAGCGGGTCCGGCAATACACAGAGG
130 GTGGCAGCGGGTCCGGCAACAAACAGAGG
* * * * * * * *
18074877 GGGATCGGGCCGATCCCCCGCTTGCGTATTATGCCTTTCCGACCGGCTCAGCACCCGTACGCTCG
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
* * * * ** * *
18074942 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCA-GTCTAAGATCAAACCGAATTGAGGGT
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAG-CCCAGTCGGATCGAGGGT
* * ** *
18075006 TGCGGCAGCAGGAT-CGATAGCAAACAG-GG
129 TGTGGCAGC-GGGTCCGGCAACAAACAGAGG
* * * * * * *
18075035 GGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTAAGCGCCCGCATGCTCA
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
* * *
18075100 TTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCCTGTCTAAGC
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18075146 ATACGGAGTT
Statistics
Matches: 358, Mismatches: 63, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.01
158 91 0.25
159 252 0.70
160 12 0.03
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGATCGAGGGTTG
TGGCAGCGGGTCCGGCAACAAACAGAGG
Found at i:18075148 original size:26 final size:26
Alignment explanation
Indices: 18075118--18075170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18075108 GTTGGCTTAG
*
18075118 GCATACCGAGTTCATTCCCTGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
* *
18075144 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
18075170 G
1 G
18075171 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:18076174 original size:317 final size:316
Alignment explanation
Indices: 18075533--18076344 Score: 882
Period size: 317 Copynumber: 2.6 Consensus size: 316
18075523 AAGCATACGA
* * * * * *** * *
18075533 AGTTCATTCCTAATCTAAGATCGGACCGGACCAAGGGTCACAACAGTAGGATCGATAGCATGCA-
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATAGCACGCAG
* * * * * *
18075597 GAGGGACCGAGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTAAGCGCCCACACGCC
66 GGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTC-CGCCGGCTGAGCGCCCGCACGCC
* * * * *
18075662 CGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATCTCTAAGCCCCAGTCGAAGCGAGGG
130 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAAGGA
* * * * ** *
18075727 TTGTGGTGACGAGATCGGCAGCACGTAGAGGGGGATCGAGCTGATCCTTGGCTTGCGTATTATGC
195 TTGTGGAGACGAGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGC
* * * * * *
18075792 CTCTCCGATCGGCTCAGCACCTGAACGCTCATTTCATGGGTTGACTTTGACAAACGG
260 ATCTCCGACCGACTCAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACAAACGG
* * * * *
18075849 AGTTCATTCTCATTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATAGCACGCAG
* * *
18075914 GGGGGACCGGGCTGATCCTCGGCTTACGCAATT-TGCCTCTCCGACCGGTTGAGCGCCCGCATGC
66 GGGGGACCGGGCTGATCCTCGGCTTGCGC-ATTCTGCCTCTCCG-CCGGCTGAGCGCCCGCACGC
* *
18075978 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGG
129 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAAGG
* *
18076043 ATTGTGGCAG-TGGGACCGACAGCACGTAGAGGGGGACC-AGGCTGATCCCCGGCTTGCGCATTA
194 ATTGTGG-AGACGAGACCGACAGCACGTAGAGGGGGACCGA-GCTGATCCCCGGCTTGCGCATTA
* ** * * * * *
18076106 TGCATCTCC-AGCCGACTGAGTGCCCGCACGCTCGTTTCTTAGGTTGACTTAGGCATACGG
257 TGCATCTCCGA-CCGACTCAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACAAACGG
* *
18076166 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGTAGCAGGATCGATAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATAGCACGCA-
* * ** *
18076231 GGGGGGACCGGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGTTGGCTGAACGCCCGCACG
65 GGGGGGACCGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGCGCCCGCACG
* * ** * *
18076295 CTCGTTTCGA-GGGTTGTCTTAGGCATACAGAGTTTATTCCATGTTTAAGC
128 CCCGTTTC-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18076345 ATATGGGGTT
Statistics
Matches: 411, Mismatches: 74, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
316 53 0.13
317 262 0.64
318 94 0.23
319 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATAGCACGCAG
GGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCCGCACGCCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCAAGGAT
TGTGGAGACGAGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCA
TCTCCGACCGACTCAGCACCCGAACGCTCATTTCATAGGTTGACTTAGACAAACGG
Found at i:18076290 original size:159 final size:157
Alignment explanation
Indices: 18075599--18076334 Score: 599
Period size: 159 Copynumber: 4.6 Consensus size: 157
18075589 AGCATGCAGA
* * * * * * *
18075599 GGGACCGAGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTAAGCGCCCACACGCCCG
1 GGGACCGGGCTGATCCCCGGCTTGCGCATT-TGCCTCTC-CGCCGGCTGAGCGCCCGCACGCTCG
* * * * * ** * *
18075664 TTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATT-CCATCTCTAAGCCCCAG-TCGAAGCGAGGG
64 TTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGG
* * * *
18075727 TTGTGG-TG-ACGAGATCGGCAGCACGTAGAGG
127 TTGTGGCAGCA-G-GATCGACAGCACGCAGGGG
* * ** * * * * * * *
18075758 GGGATCGAGCTGATCCTTGGCTTGCGTATTATGCCTCTCCGATCGGCTCAGCACCTGAACGCTCA
1 GGGACCGGGCTGATCCCCGGCTTGCGCATT-TGCCTCTCCG-CCGGCTGAGCGCCCGCACGCTCG
* * * * * * * *
18075823 TTTCATGGGTTGACTTTGACAAACGGAGTTCATTCTCATTCTAAGATCAGACCGGACTGAGGGTT
64 TTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
18075888 GTGGCAGCAGGATCGACAGCACGCA-GGG
129 GTGGCAGCAGGATCGACAGCACGCAGGGG
* * * * *
18075916 GGGACCGGGCTGATCCTCGGCTTACGCAATTTGCCTCTCCGACCGGTTGAGCGCCCGCATGCCCG
1 GGGACCGGGCTGATCCCCGGCTTGCGC-ATTTGCCTCTCCG-CCGGCTGAGCGCCCGCACGCTCG
* * * ** * *
18075981 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCAAGGA
64 TTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGG
** * * *
18076044 TTGTGGCAGTGGGACCGACAGCACGTAGAGG
127 TTGTGGCAGCAGGATCGACAGCACGCAGGGG
* * * *
18076075 GGGACCAGGCTGATCCCCGGCTTGCGCATTATGCATCTCCAGCCGACTGAGTGCCCGCACGCTCG
1 GGGACCGGGCTGATCCCCGGCTTGCGCATT-TGCCTCTCC-GCCGGCTGAGCGCCCGCACGCTCG
*
18076140 TTTCTTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
64 TTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
* * *
18076205 ATGGTAGCAGGATCGATAGCACGCAGGGG
129 GTGGCAGCAGGATCGACAGCACGCAGGGG
* ** *
18076234 GGGACCGGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGTTGGCTGAACGCCCGCACGCTC
1 GGGACCGGGCT-GATCCCCGGCTTGCGCATT-TGCCTCTCC-GCCGGCTGAGCGCCCGCACGCTC
* * * *
18076298 GTTTCGA-GGGTTGTCTTAGGCATACAGAGTTTATTCC
63 GTTTC-ATAGGTTGACTTAGGCATACGGAGTTCATTCC
18076335 ATGTTTAAGC
Statistics
Matches: 458, Mismatches: 104, Indels: 30
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.00
158 126 0.28
159 321 0.70
160 8 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GGGACCGGGCTGATCCCCGGCTTGCGCATTTGCCTCTCCGCCGGCTGAGCGCCCGCACGCTCGTT
TCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGT
GGCAGCAGGATCGACAGCACGCAGGGG
Found at i:18077072 original size:26 final size:26
Alignment explanation
Indices: 18077036--18077086 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077026 TTGACTTAGG
18077036 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
18077062 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
18077087 GATCAGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:18077918 original size:26 final size:26
Alignment explanation
Indices: 18077882--18077934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18077872 GTTGACTTAG
18077882 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
18077908 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18077934 G
1 G
18077935 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18078256 original size:26 final size:26
Alignment explanation
Indices: 18078222--18078272 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18078212 GTTGACTTAG
18078222 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18078248 GCATCCGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
18078273 TGATCGAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18078560 original size:343 final size:341
Alignment explanation
Indices: 18077455--18078619 Score: 1236
Period size: 340 Copynumber: 3.4 Consensus size: 341
18077445 GGACCGAGCC
* * * * * * * *
18077455 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTTT--TGCGGT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACACTCTCATTTCGTG-GGT
* * * * * * *
18077518 TGTCTTAGGCATATGGAGTTCAT-TCCATATCTAAGCATACGGAGTTCATTCCCACTCTATGATC
65 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
18077582 AG-TCCGAACCGAAGGGTTGCGGTAGCAGGACAGGCAACAAGATCGACATCACGTAGGAGGGACT
129 AGAACAG-ACCG-AGGG-T----TA-CA--ACA-G---CAGGATCGACAGCACGCAGGAGGGACC
* * * * *
18077646 GGGCCGATCCCCGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGT
180 GGGTCGATCCTC-GCTTGTGCATTCTG-CTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGT
* * *
18077711 GGGTTGGCTTAGGCATAGGGAGTTCATTCTAAGTCTAAGCCCCAGCCAGACCGAGGGTTCTGGCA
243 GGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCA
* ** * * *
18077776 GCAGGACCGGTAGCACACAGCGGGGGACCGAGCT
308 GCGGGACCGACAGCACGCAGCGGGGGATCGGGCT
* * * * * *
18077810 GATCCCCAGCTTACGCATTATGCCTCTCCGATCGGTTGAGTGCCCACACGCTCATTTTGTGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACACTCTCATTTCGTGGGTT
*
18077875 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
18077940 ATCAGACCGAGGGTTACGATAGCAGGATCGACAGCTCGCA-GAGGGGACCAGGTTGATCCTCGGT
131 AACAGACCGAGGGTTACAACAGCAGGATCGACAGCACGCAGGA-GGGACCGGGTCGATCCTCGCT
* ** *
18078004 TGCGCATTCTGCTC-TCTGGTAGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCAT
195 TGTGCATTCTGCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCAT
* * * *
18078068 AGGGAGTTCATTCCACGTCTAAGCCCTAGCCGGA-TCGAGGGTTGTGGTAG-GGGACCGACAGCA
259 AGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACT-GAGGGTTGTGGCAGCGGGACCGACAGCA
*
18078131 CGCAGCGAGGGATCGGGCT
323 CGCAGCGGGGGATCGGGCT
* * * * *
18078150 GATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCATA-TGCTCGTTTCATGGGT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACACT-CTCATTTCGTGGGT
** *
18078214 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCCGGAGTTCATTCCCAGTCTATGATC-
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
18078278 GAACTGGATCGAGTGTTGCAACAGTAGGA-CTGGCAGCACGCAGGAGGGACCGGGTCGATCCTCG
130 GAAC-AGACCGAGGGTTACAACAGCAGGATC-GACAGCACGCAGGAGGGACCGGGTCGATCCTCG
* * * * *
18078342 ACCTGTGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGCACACTTGTTTTGTGGATTGGCTTAGG
193 -CTTGTGCATTCTG-CTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGG
* *
18078407 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCGGGACCGACAG
256 CATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAG
*
18078472 CACGCAGTGGGGGATCGGGCT
321 CACGCAGCGGGGGATCGGGCT
* * *
18078493 AATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACTCTCATTTCGTGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACACTCTCATTTCGTGGGTT
* * * *
18078558 GACTTAGACATATGGAGTTCATCCCCAGTCTAACCAAATGGAGTTCATTCCCAGTCTAAGAT
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
18078620 TGGTGTTTCC
Statistics
Matches: 681, Mismatches: 112, Indels: 46
0.81 0.13 0.05
Matches are distributed among these distances:
339 4 0.01
340 181 0.27
341 99 0.15
342 100 0.15
343 170 0.25
344 1 0.00
346 1 0.00
347 2 0.00
349 1 0.00
350 2 0.00
354 1 0.00
355 50 0.07
356 62 0.09
357 7 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (341 bp):
GATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCACACTCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
AACAGACCGAGGGTTACAACAGCAGGATCGACAGCACGCAGGAGGGACCGGGTCGATCCTCGCTT
GTGCATTCTGCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGACAGCACGC
AGCGGGGGATCGGGCT
Found at i:18080720 original size:26 final size:26
Alignment explanation
Indices: 18080684--18080736 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080674 GTTGGCTTAG
18080684 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
18080710 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
18080736 G
1 G
18080737 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:18080910 original size:26 final size:26
Alignment explanation
Indices: 18080880--18080932 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18080870 GTTGACTTAG
*
18080880 GCATACATAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
18080906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18080932 G
1 G
18080933 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18080921 original size:196 final size:196
Alignment explanation
Indices: 18080581--18080959 Score: 521
Period size: 196 Copynumber: 1.9 Consensus size: 196
18080571 TTGCGACAAT
* ** * * *
18080581 AGGATAGACAGCACATAGGGGGGATCTGGTCGATCCCCAGCTTGTGCGTTCTACCTTTTCGACCG
1 AGGATAGACAGCACATAAGGGGGATCTGGTCGATCCCCAGCTTAAGCATTCCACCTTCTCGACCG
* * * * *
18080646 GTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GTTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
* * * *
18080711 CATACGGAGTTCATTTCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAACAGTAGGACCAGCAA
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAAGGTTGCAACAGTAGGACCAGCAA
18080776 C
196 C
* * * *
18080777 AGGATCGACAGCACGTAAGGGGGA-CTGGGTCGATCCCCAGCTTAAGCATTCCGCC-TCTCTGGC
1 AGGATAGACAGCACATAAGGGGGATCT-GGTCGATCCCCAGCTTAAGCATTCCACCTTCTC-GAC
*
18080840 CGGTTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACATAGTTCATCCC-TAGTCT
64 CGGTTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAT-GTCT
*
18080904 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAAGGTTGCGACAG
128 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAAGGTTGCAACAG
18080960 CAAGATCGAC
Statistics
Matches: 159, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
195 6 0.04
196 153 0.96
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
AGGATAGACAGCACATAAGGGGGATCTGGTCGATCCCCAGCTTAAGCATTCCACCTTCTCGACCG
GTTGAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAAGGTTGCAACAGTAGGACCAGCAA
C
Found at i:18081389 original size:158 final size:157
Alignment explanation
Indices: 18080906--18081407 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 157
18080896 CCTAGTCTAA
** * * *
18080906 GCATACGGAGTTCATTCC-CAGTCTAAGATCAGACTGGA-CAGAAGGTTGCGACAGCAAGATCGA
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACCAGACCA-AAGGTTGTGGCAGCAGGATCGA
* * * ** * * *
18080969 CAGCACGCAGGGGGGACCGGGCCGATCCC-CGACTTGTGCTTTCTGCCTCTCCGATCAGTTGAGC
64 CAGCACACAGGGGGGACCGGGTCGATCCCTAG-CTTACGCATTCTGCCTCTCCGAT-AGCTAAGC
* *
18081033 TCCCACACGCTCGTTTCGTGGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
18081064 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGTAGGA-CTGG
1 GCATACGGAGTTCATTCCACGTCTAAG-ATCAGACCAGACCAAAGGTTGTGGCAGCAGGATC-GA
* * ** * * * *
18081127 CAGCACACAGGAGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTTTGGTTGGCTTAGT
64 CAGCACACAGG-GGGGACCGGGTCGATCCCTAGCTTACGCATTCTGCCTC-TCCGATAGCTAAGC
* * * * *
18081192 GCCCGTACGCTCGTTTTGTGGGTTGACTTAT
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
18081223 GCATACGGAGTTCATTCC-CAGTCTAAGATCAGACCAGACCAAAGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACCAGACCAAAGGTTGTGGCAGCAGGATCGAC
* * * *
18081287 AGCACACAGGGGGGACTGGGTTGATCCCTAGCTTACGCATTCTACCTCTCCAGCTAGCTAAGCAC
65 AGCACACAGGGGGGACCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCC-GATAGCTAAGCAC
18081352 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
18081381 GCAAACGGAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
18081408 CATATGGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 144 0.53
159 123 0.45
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCAGACCAGACCAAAGGTTGTGGCAGCAGGATCGACA
GCACACAGGGGGGACCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTCCGATAGCTAAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:18082999 original size:26 final size:26
Alignment explanation
Indices: 18082949--18083001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18082939 GTTGACTTAG
* *
18082949 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
18082975 GCATACGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
18083001 G
1 G
18083002 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Found at i:18083455 original size:158 final size:156
Alignment explanation
Indices: 18082975--18083469 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 156
18082965 TCTAGTCTAA
* ** * * * *
18082975 GCATACGGAGTTCATTCCCAATCTAAGATTGGATTGGACCAAGGGTTGTGACAGTAGGATCAGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCA
* * ** * ** * *
18083040 GCACGCAGGGGGGGACCGGGCCGATCCCCGTTTTACGCATTCTGCCTCTCAAGCCAGCTGAGCGC
65 GCACGCA-GGGGGGATCGGG-CGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* *
18083105 CCGCACACC-CATTTCGTGGGTTGGCTTAG
128 CCGTAC-CCTCGTTTCGTGGGTTGGCTTAG
* * * *
18083134 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAG-CTGAACCGAGGGTTGTGGCAGCGGGA-CTAG
1 GCATACGGAGTTCATTCCA-GTCTAAGAT-CAGACTGGACCGAGGGTTGTGGCAGCAGGATC-AG
* * * *
18083197 CAGCACGCAGAGGGGGATCGAGGCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
63 CAGCACGCAG-GGGGGATCG-GGCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * *
18083262 TCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 ACCCGTACCCTCGTTTCGTGGGTTGGCTTAG
*
18083293 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAG-C
* ** *
18083357 AGCACACAGGGGGGATCGGGTCGATCCCTGACTTGCTTATTCTGCCTCTCCGGTCGGCTGAGCAC
64 AGCACGCAGGGGGGATCGGG-CGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* * * *
18083422 CTGTACCCTTGTTTCGTGAGTTGGCATCA-
128 CCGTACCCTCGTTTCGTGGGTTGGC-TTAG
*
18083451 GCATACGGAGCTCATTCCA
1 GCATACGGAGTTCATTCCA
18083470 TGTTTAAGCA
Statistics
Matches: 275, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 92 0.33
159 175 0.64
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAGCAG
CACGCAGGGGGGATCGGGCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
TACCCTCGTTTCGTGGGTTGGCTTAG
Found at i:18083503 original size:26 final size:26
Alignment explanation
Indices: 18083450--18083503 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
18083440 AGTTGGCATC
* *
18083450 AGCATACGGAGCTCATTCCATGTTTA
1 AGCATACAGAGCTCATTCCATGTCTA
*
18083476 AGCATACAGAGTTCATTCCCA-GTCTA
1 AGCATACAGAGCTCATT-CCATGTCTA
18083502 AG
1 AG
18083504 ATTTTTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGCTCATTCCATGTCTA
Found at i:18084204 original size:26 final size:26
Alignment explanation
Indices: 18084174--18084224 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18084164 TTGACTTAGG
18084174 CATACGGAGTTCATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* *
18084200 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
18084225 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:18084664 original size:158 final size:155
Alignment explanation
Indices: 18084200--18084699 Score: 479
Period size: 159 Copynumber: 3.2 Consensus size: 155
18084190 CCAATCTAAC
* * * *
18084200 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATCGGCTA
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGACAGTAGGATC-GATA
* * * * * *
18084265 -CATGCA-GGGGGATCGGACCGATCCCTGGCTTACGCATTCTGCCTCTCCAGTCGGCCGTGCGCC
64 GCACGCAGGGGGGATCGG-TCGATCCC-CGCTTACGCATTCTGCCTCTTCAGTCGGCTGAGCGCC
* *
18084328 CGCACGCTCGTTTCATGGATTGGTTTAGG
127 CGCACGCTCGTTTCATGGGTTGGCTTAGG
* * ** * * * * **
18084357 CATAGGGAGTTTATT-CCATGTCTAAGCCCCAGG-CTGACCGAGGGTTGTGGCAGTGGGACCGGC
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATC-GGACGGACCGAGGGTTGTGACAGTAGGATCGAT
* * * * *
18084420 AGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTTCGCATTATGCCTCTTCGGTTGGCTCAGCG
63 AGCACGCAG-GGGGGATC-GGTCGATCCCCG-CTTACGCATTCTGCCTCTTCAGTCGGCTGAGCG
* * *
18084485 CCCGCACGCTCATTTCATGGGTTGACTTATG
125 CCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * *
18084516 CATACAGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGTTGTGACAGTAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGTGACAGTAGGATCGATAG
* * * * *
18084581 CACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTTCCTCTTCAGCCGACTGAGCGCCC
65 CACGCAGGGGGGATCG-GTCGATCCCC-GCTTACGCATTCTGCCTCTTCAGTCGGCTGAGCGCCC
* *
18084646 GCACACTCGTTTCGTGGGTTGGCTTAGG
128 GCACGCTCGTTTCATGGGTTGGCTTAGG
18084674 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
18084700 CATATGAAGT
Statistics
Matches: 271, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 52 0.19
158 91 0.34
159 118 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGTGACAGTAGGATCGATAGC
ACGCAGGGGGGATCGGTCGATCCCCGCTTACGCATTCTGCCTCTTCAGTCGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGG
Found at i:18086939 original size:26 final size:26
Alignment explanation
Indices: 18086903--18086955 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18086893 GTTGACTTAG
* *
18086903 GCATACGAAGTTGATCCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18086929 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18086955 G
1 G
18086956 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18087279 original size:159 final size:159
Alignment explanation
Indices: 18086990--18087281 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 159
18086980 CAGCACGCTG
* * * * * * *
18086990 GGGGGATCGGGCCGATCCTCGGCTTACGCATTTTGCCTCTCCGACCGGCTGAGCACTCGTACGCC
1 GGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACACTCGAACGCC
* * * * *
18087055 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGG
18087120 TTGTGGCAGTGGGACCGGTAGCACGTAGA
131 TTGTGGCAGTGGGACCGGTAGCACGTAGA
* * * * *
18087149 GGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTTTCCGATCGGCTCAACGCTCGAACGCT
1 GGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACACTCGAACGCC
* * * * *
18087214 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATTGAACTGAGG
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAATCGAACCGAGG
18087278 GTTG
130 GTTG
18087282 CGACGGTACG
Statistics
Matches: 110, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
159 107 0.97
160 3 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACACTCGAACGCC
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGG
TTGTGGCAGTGGGACCGGTAGCACGTAGA
Found at i:18087301 original size:159 final size:158
Alignment explanation
Indices: 18086981--18087312 Score: 360
Period size: 159 Copynumber: 2.1 Consensus size: 158
18086971 GGGTTGCGAC
* * * * * * *
18086981 AGCACGCTGGGGGGATCGGGCCGATCCTCGGCTTACGCATTTTGCCTCTCCGACCGGCTGAGCAC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACAC
* * * * *
18087046 TCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 TCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAATCG
* * * ** *
18087111 GACCGAGGGTTGTGGCAGTGGGACCGGT
131 AACCGAGGGTTGCGACAGTACGACCGAT
* * * * *
18087139 AGCACGTAGAGGGGGATCGGGCCGATCCCCAGCTTGCACATTATGCCTTTCCGATCGGCTCAACG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACA
* * * *
18087204 CTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAAT
65 CTCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAAT
* * * *
18087268 TGAACTGAGGGTTGCGACGGTACGATCGAT
129 CGAACCGAGGGTTGCGACAGTACGACCGAT
18087298 AGCACGCAGGGGGGA
1 AGCACGCAGGGGGGA
18087313 CCAAGTCAGT
Statistics
Matches: 140, Mismatches: 32, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 13 0.09
159 124 0.89
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGACCGGCTCAACAC
TCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAATCG
AACCGAGGGTTGCGACAGTACGACCGAT
Found at i:18087630 original size:26 final size:26
Alignment explanation
Indices: 18087600--18087652 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18087590 GTTGACTTAG
18087600 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
18087626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18087652 G
1 G
18087653 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18088348 original size:26 final size:26
Alignment explanation
Indices: 18088318--18088373 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18088308 TGGGTTGACT
18088318 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
18088344 TAAGCATACGGAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
18088370 TAAG
1 TAAG
18088374 ATTAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:18088804 original size:26 final size:26
Alignment explanation
Indices: 18088768--18088820 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
18088758 GTTGGCTTAG
18088768 GCATACGGAGTTCATTCCATA-TCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
18088794 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18088820 G
1 G
18088821 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18089178 original size:26 final size:26
Alignment explanation
Indices: 18089149--18089201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18089139 GTTGATTTAG
18089149 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
18089175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
18089201 G
1 G
18089202 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:18089680 original size:26 final size:26
Alignment explanation
Indices: 18089650--18089702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18089640 GTTGGCTTAG
*
18089650 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
18089676 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18089702 G
1 G
18089703 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:18089894 original size:26 final size:26
Alignment explanation
Indices: 18089859--18089911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18089849 GTTAACTTAG
18089859 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18089885 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18089911 G
1 G
18089912 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18090238 original size:26 final size:26
Alignment explanation
Indices: 18090202--18090253 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18090192 GTTGGCTTAG
*
18090202 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
18090228 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18090254 CAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18091057 original size:26 final size:26
Alignment explanation
Indices: 18091021--18091073 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18091011 GTTGACGTAG
18091021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
18091047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18091073 G
1 G
18091074 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18092254 original size:18 final size:17
Alignment explanation
Indices: 18092215--18092253 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
18092205 CGTTGGCATT
18092215 GGGGGTTCAGGCGATTG
1 GGGGGTTCAGGCGATTG
*
18092232 GGGGGTTCAGGTGATTG
1 GGGGGTTCAGGCGATTG
18092249 GGGGG
1 GGGGG
18092254 GCCAGGGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.10, C:0.08, G:0.59, T:0.23
Consensus pattern (17 bp):
GGGGGTTCAGGCGATTG
Found at i:18093692 original size:170 final size:169
Alignment explanation
Indices: 18093404--18093715 Score: 387
Period size: 170 Copynumber: 1.8 Consensus size: 169
18093394 TGGATCGAAT
*
18093404 CGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATTGGCAGCACGAAAGGGGGATCAGATCGATCCC
1 CGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATGGGCAGCACGAAAGGGGGATCAGATCGATCCC
* * * *
18093469 CAACTTGTGCGTTCTGCTCTTCGATCGACTGAGCGCCTACACATTCATTTCATGGGTTGGCTTAG
66 CAACTTGTGCATTCTGCTCTCCGATCGACTGAGCGCCCACACATTCATTTCATGGGTTGACTTAG
*
18093534 GCATACTGAGTTTATTCCATGTCTAAGCCCCAGCCAGAC
131 GCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCAGAC
* * * * * * * *
18093573 CGAGGGTTGTGGCAGTAGGATCGGTAGCGGGATGGGCAGCATGCAGAGGGGGATC-GAGCTGATC
1 CGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATGGGCAGCACG-AAAGGGGGATCAGATC-GATC
* * * * * *
18093637 CCCGACTTGT-CATTGTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTT-GTTTCATGGGTTGAC
64 CCCAACTTGTGCATTCTG-CTCTCCGATCGACTGAGCGCCCACAC-ATTCATTTCATGGGTTGAC
18093700 TTAGGCATACGGAGTT
127 TTAGGCATACGGAGTT
18093716 CATCCCCAGT
Statistics
Matches: 119, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
169 44 0.37
170 73 0.61
171 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (169 bp):
CGAGGGTTGTGGCAGCAAGACCAGTAGCAGGATGGGCAGCACGAAAGGGGGATCAGATCGATCCC
CAACTTGTGCATTCTGCTCTCCGATCGACTGAGCGCCCACACATTCATTTCATGGGTTGACTTAG
GCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCAGAC
Found at i:18093734 original size:26 final size:26
Alignment explanation
Indices: 18093704--18093756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18093694 GTTGACTTAG
*
18093704 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
18093730 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18093756 G
1 G
18093757 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18093988 original size:354 final size:361
Alignment explanation
Indices: 18093493--18094318 Score: 954
Period size: 369 Copynumber: 2.3 Consensus size: 361
18093483 TGCTCTTCGA
* * * * ** *
18093493 TCGACTGAGCGCCTACACATTCATTTCATGGGTTGGCTTAGGCATACTGAGTTTATTCCATGTCT
1 TCGACTGAGCACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * ** * * *
18093558 AAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCGGGATGGGCAGCATGCAGAGGG
66 AAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAACGGGATCGGCAGCACGCAGAGGG
* **
18093623 GGATCGAGCTGATCCCCGACTTG-TCATTGTGCCTCTCCG-A-TCGG-C-T-GAGCGCCCGCACG
131 GGATCGAGCTGATCCCCGACTTGCGCATTACGCCTCTCCGCACTCGGCCGTGGAGCGCCCGCACG
* *
18093682 CTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-AGAGTTCATT
196 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAAGTTCATT
* * * * * **
18093746 CCCAGTCTAAGATCAGA-CTGGAGCGAGGGTTGCGGTAGCAGGATCAACAATATGCAAGGGGGAC
261 CCCAATCTAAGATCAAATC-AGAGCGAGGGTTGCGGCAGCAGGATCAACAACACCCAAGGGGGAC
*
18093810 CG-GACCGGTCCCCGGCTTACACATTCTGCCTCTCCAG
325 CGAG-CCGATCCCCGGCTTACACATTCTGCCTCTCCAG
*
18093847 TCGACTGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
1 TCGACTGAGCACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * ** * *
18093912 AAGCCCCAACCGGACCGAGGGTTATGGTAGTAGGACCGACAATTGGATCGGTAGCACGTAGAGGG
66 AAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAACGGGATCGGCAGCACGCAGAGGG
*
18093977 GGA-CTGAGCTGATCCCTGACTTGCGCATTACGCCTCTCCGACCAGCCTCTTCGGCCGGTGGAGC
131 GGATC-GAGCTGATCCCCGACTTGCGCATTACGCCTCTCCG--CA----C-TCGGCC-GTGGAGC
* * *
18094041 GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATCCCCAGTCTAAGCATACGA
187 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA
* * * * *
18094106 AAGTTCATTCCCAATCTAAGATCAAATCAGATCGAGGGTTTCGGCAGTAGGATCGACAGCACCCA
252 AAGTTCATTCCCAATCTAAGATCAAATCAGAGCGAGGGTTGCGGCAGCAGGATCAACAACACCCA
* * * *
18094171 GGGGGGACCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGG
317 AGGGGGACCGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCAG
* * * * **
18094216 TTGGCTGAGCACCCACATG-CCAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
1 TCGACTGAGCACCCACACGTTC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * *
18094280 TAAACCCCTACCGGACCGAGGGTTGTGGCAGCAGGACCG
65 TAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCG
18094319 GTAGCACGCA
Statistics
Matches: 393, Mismatches: 60, Indels: 23
0.83 0.13 0.05
Matches are distributed among these distances:
353 1 0.00
354 128 0.33
355 13 0.03
358 1 0.00
364 4 0.01
365 1 0.00
367 1 0.00
368 64 0.16
369 178 0.45
370 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (361 bp):
TCGACTGAGCACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAACGGGATCGGCAGCACGCAGAGGG
GGATCGAGCTGATCCCCGACTTGCGCATTACGCCTCTCCGCACTCGGCCGTGGAGCGCCCGCACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAAGTTCATT
CCCAATCTAAGATCAAATCAGAGCGAGGGTTGCGGCAGCAGGATCAACAACACCCAAGGGGGACC
GAGCCGATCCCCGGCTTACACATTCTGCCTCTCCAG
Found at i:18094794 original size:26 final size:26
Alignment explanation
Indices: 18094764--18094816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18094754 GTTGACTTAG
18094764 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18094790 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18094816 G
1 G
18094817 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18096358 original size:26 final size:26
Alignment explanation
Indices: 18096329--18096381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18096319 GTTGGCTTAG
*
18096329 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
18096355 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18096381 G
1 G
18096382 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:18097256 original size:26 final size:26
Alignment explanation
Indices: 18097226--18097278 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18097216 GTTGACTTAG
*
18097226 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
18097252 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
18097278 G
1 G
18097279 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:18097545 original size:158 final size:158
Alignment explanation
Indices: 18097383--18097755 Score: 425
Period size: 159 Copynumber: 2.4 Consensus size: 158
18097373 CTGAGTGCCT
* * * * *
18097383 GCACGCTCGTTTCGTGGTTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGG
* *
18097447 A-TGGAGGGTT-GTAGAGCAGGACCGACAGCACACAGAGGGGGATCGGGCCGATCCTCGACTTGC
66 ACT-GAGGGTTAG-ACAGCAGGACCGACAGCACACAG-GGGGGACCGGGCCGATCCTCGACTTGC
18097510 ACATTATGCCTCTCCGATC-AGCTCAACGCCC
128 ACATTATGCCTCTCCGATCGA-CTCAACGCCC
* * * * ***
18097541 GCACGCTCATTTTGTGGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATTGGATA
1 GCACGCTCGTTTCGT-GGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATA
* * **
18097604 GGACTGAGGGTTACGACAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCGATCCTCGACTTGC
64 GGACTGAGGGTTA-GACAGCAGGACCGACAGCACACAGGGGGGACCGGGCCGATCCTCGACTTGC
* * * *
18097669 ACATTCTGCCTTTTCGATCGACTGAACGCCC
128 ACATTATGCCTCTCCGATCGACTCAACGCCC
* *
18097700 GCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
18097756 TACGGAGTTC
Statistics
Matches: 179, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
157 3 0.02
158 47 0.26
159 105 0.59
160 23 0.13
161 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGG
ACTGAGGGTTAGACAGCAGGACCGACAGCACACAGGGGGGACCGGGCCGATCCTCGACTTGCACA
TTATGCCTCTCCGATCGACTCAACGCCC
Found at i:18097757 original size:26 final size:25
Alignment explanation
Indices: 18097727--18097778 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
18097717 GTTGGCTTAG
18097727 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
18097753 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
18097778 G
1 G
18097779 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:18098122 original size:26 final size:26
Alignment explanation
Indices: 18098092--18098144 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18098082 GTTGACTTAG
18098092 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
*
18098118 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
18098144 G
1 G
18098145 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:18098314 original size:26 final size:26
Alignment explanation
Indices: 18098278--18098330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18098268 GTTGGCTTAG
18098278 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18098304 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18098330 G
1 G
18098331 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18098653 original size:26 final size:26
Alignment explanation
Indices: 18098617--18098670 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
18098607 TGGGTTAGCT
18098617 TAGGCATACGGAGTTCATTC-CATGTC
1 TAGGCATACGGAGTTCATTCTCA-GTC
*
18098643 TAGGCTTACGGAGTTCATTCTCAGTC
1 TAGGCATACGGAGTTCATTCTCAGTC
18098669 TA
1 TA
18098671 AGAGTTTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCTCAGTC
Found at i:18098917 original size:25 final size:26
Alignment explanation
Indices: 18098879--18098930 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
18098869 GTTGGCTTAG
18098879 GCATACGATGTTCATT-CCATGTCTAA
1 GCATACGATGTTCATTCCCA-GTCTAA
*
18098905 GCATAGGA-GTTCATTCCCAGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
18098930 G
1 G
18098931 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:18100173 original size:56 final size:56
Alignment explanation
Indices: 18100106--18100211 Score: 203
Period size: 56 Copynumber: 1.9 Consensus size: 56
18100096 ATTCCATGTC
18100106 AAGCCCCAGCTGGACTGAAGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGA
1 AAGCCCCAGCTGGACTGAAGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGA
*
18100162 AAGCCCCAGCTGGACTGAAGGTTGTGACAGTGGGACCGACAGCACGCAGA
1 AAGCCCCAGCTGGACTGAAGGTTGTGACAGCGGGACCGACAGCACGCAGA
18100212 TGAGGATCGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.27, C:0.25, G:0.37, T:0.10
Consensus pattern (56 bp):
AAGCCCCAGCTGGACTGAAGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGA
Found at i:18100824 original size:26 final size:26
Alignment explanation
Indices: 18100794--18100843 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
18100784 GGCTTAGGCA
18100794 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
18100820 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
18100844 AGTTTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:18101221 original size:25 final size:26
Alignment explanation
Indices: 18101192--18101242 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
18101182 GGGTTGACTT
*
18101192 AGCATACTGAATTCA-TCCCAGTCTA
1 AGCATACGGAATTCATTCCCAGTCTA
*
18101217 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAATTCATTCCCAGTCTA
18101243 CGATAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
AGCATACGGAATTCATTCCCAGTCTA
Found at i:18101687 original size:157 final size:156
Alignment explanation
Indices: 18101218--18102034 Score: 655
Period size: 157 Copynumber: 5.2 Consensus size: 156
18101208 CCCAGTCTAA
* * * * *
18101218 GCATACGGAGTTCATTCCCAGTCTACGAT-AGACCAGACCGAGGGTTACAGCAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * ** *
18101282 GCATGCTGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTG-GGCTCC-AGCCGG-TGAGCAC
65 GCACGCAGGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCCC
* *
18101344 CCGCACACCCGTTTCATGGG-TGG-TTAGG
128 CCGCACACTCGTTTCGTGGGTTGGCTTA-G
* ** * * * * *
18101372 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
18101436 AGCACGCAGAGGGGGACTGGGCCGATCCTCAGCTTGCGCATTATTCCTCTCCGACTGGCTCAACG
64 AGCACGCAG-GGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCC
** * *
18101501 GTCGCACACTCGTTTAGTGGGTTGACTTAG
127 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* **
18101531 GCATACGGAGTTCATTCCTAGTCCAAGATCAGACCAGACTGAGGGTTGCGTTAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
18101596 GCACGCAGGGGGGACGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCCCCC
65 GCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCCCC
*
18101661 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACACTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
18101688 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGGGACCCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
18101751 CAGCATGCAGTGGGGGATCGAGCCGATCCCCGGCTTGCGTATTATGCCTTTTCGATCGGTTCAGC
63 CAGCACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * * *
18101816 GCCTGCACGCT-ATTTCGTGGGTTGACTTAG
126 CCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * *
18101846 GCATATGGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTACGGTAGCAGCATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
18101911 GCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGACCGGCTGAGTGCA
65 GCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA--GC-
** *
18101976 CGTACGCACACTCGTTTCGTGGGTTGGCTTAA
126 C-CCCGCACACTCGTTTCGTGGGTTGGCTTAG
**
18102008 GCATACAAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
18102035 CATACGGAGT
Statistics
Matches: 513, Mismatches: 125, Indels: 42
0.75 0.18 0.06
Matches are distributed among these distances:
153 3 0.01
154 21 0.04
155 31 0.06
156 34 0.07
157 161 0.31
158 105 0.20
159 110 0.21
160 4 0.01
161 9 0.02
162 35 0.07
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCCCCG
CACACTCGTTTCGTGGGTTGGCTTAG
Found at i:18101915 original size:315 final size:315
Alignment explanation
Indices: 18101218--18102035 Score: 986
Period size: 316 Copynumber: 2.6 Consensus size: 315
18101208 CCCAGTCTAA
* * * * *
18101218 GCATACGGAGTTCATTCCCAGTCTACGAT-AGACCAGACCGAGGGTTACAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
* * * * ** * *
18101282 GCATGCTGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTG-GGCTCCAGCCGGTGAGCACCC
66 GCACGCAGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTGAGCCCCC
* *
18101346 GCACACCCGTTTCATGGG-TGG-TTAGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
130 GCACACTCGTTTCGTGGGTTGGCTTA-GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * *
18101409 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACTGGGCCGATCCTCAGCTTGCG
194 ACCGAGGGTTGTGGCAGCAGGACCCACAGCACGCAGAGGGGGACTGAGCCGATCCCCAGCTTGCG
* * *
18101474 CATTATTCCTCTCCGACTGGCTCAACGGTCGCACACTCGTTTAGTGGGTTGACTTAG
259 CATTATGCCTCTCCGACTGGCTCAACGCTCGCACACTCATTTAGTGGGTTGACTTAG
* * * *
18101531 GCATACGGAGTTCATTCCTAGTCCAAGATCAGACCAGACTGAGGGTTGCGTTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
* *
18101596 GCACGCAGGGGGGACGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCCCCC
66 GCACGCAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGG-TGAGCCCCC
*
18101661 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
130 GCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* * * * *
18101726 TCGAGGGTTGTGGCAGCGGGACCCACAGCATGCAGTGGGGGA-TCGAGCCGATCCCCGGCTTGCG
195 CCGAGGGTTGTGGCAGCAGGACCCACAGCACGCAGAGGGGGACT-GAGCCGATCCCCAGCTTGCG
* * * * * * *
18101790 TATTATGCCTTTTCGA-TCGGTTCAGCGC-CTGCACGCT-ATTTCGTGGGTTGACTTAG
259 CATTATGCCTCTCCGACT-GGCTCAACGCTC-GCACACTCATTTAGTGGGTTGACTTAG
* * *
18101846 GCATATGGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTACGGTAGCAGCATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
* * * * *
18101911 GCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGACCGGCTGAGTGCA
66 GCACGCAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGG-TGA--GC-
** * ***
18101976 CGTACGCACACTCGTTTCGTGGGTTGGCTTAAGCATACAAAGTTCATTCCATGTCTAAGC
126 C-CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
18102036 ATACGGAGTT
Statistics
Matches: 430, Mismatches: 62, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
313 49 0.11
314 51 0.12
315 115 0.27
316 158 0.37
317 3 0.01
318 2 0.00
319 1 0.00
320 51 0.12
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTGAGCCCCCG
CACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAGCAGGACCCACAGCACGCAGAGGGGGACTGAGCCGATCCCCAGCTTGCGCA
TTATGCCTCTCCGACTGGCTCAACGCTCGCACACTCATTTAGTGGGTTGACTTAG
Found at i:18102045 original size:26 final size:26
Alignment explanation
Indices: 18102005--18102060 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
18101995 TGGGTTGGCT
18102005 TAAGCATACAAAGTTCATT-CCATGTC
1 TAAGCATACAAAGTTCATTCCCA-GTC
**
18102031 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
18102057 TAAG
1 TAAG
18102061 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:18102424 original size:26 final size:26
Alignment explanation
Indices: 18102388--18102440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18102378 GTTGACTTAG
*
18102388 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
18102414 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
18102440 G
1 G
18102441 ATCAAAACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:18102953 original size:26 final size:26
Alignment explanation
Indices: 18102917--18102967 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18102907 TGGCTTAGGC
18102917 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
18102943 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
18102968 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:18104558 original size:26 final size:26
Alignment explanation
Indices: 18104510--18104560 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18104500 TGACTTTGGT
*
18104510 ATACGAAGTTCATCCCTAGTCTAAGC
1 ATACGAAGTTCATCCCTAATCTAAGC
*
18104536 ATACGGAGTTCATTCCC-AATCTAAG
1 ATACGAAGTTCA-TCCCTAATCTAAG
18104561 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCTAATCTAAGC
Found at i:18111994 original size:158 final size:157
Alignment explanation
Indices: 18111506--18112316 Score: 753
Period size: 159 Copynumber: 5.1 Consensus size: 157
18111496 CTCAGCCTAA
* *
18111506 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGA-ACCGGACTGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATA--GGACAGAGGGTTGCGGCAGCAGGATC-G
* * * * * * *
18111569 CAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCTGATCGGCTGAGCG
63 CAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
18111634 CCCGTACGCCTGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
* * ** * * * *
18111664 GCATATGGAGTTCATT-TCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATAGGACAGAGGGTTGCGGCAGCAGGATC-G
** ** * * * * *
18111727 CAGCACGCATA-GGGGGATTGGGCTAATCCCCGGTTTGTGCATTAC-GCCTCTTCGGTTGGCTCA
63 CAGCACG--TAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTGA
** ** * *
18111790 GCGCCCGCACGCTCATTTTGTGGGCTGACTTAG
125 GCGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
* *
18111823 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCGGCAGCAGGATCG-CA
* * *
18111888 GCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
65 GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
18111953 CGTACGCTTGTTTCATGGGTTGGCTTAA
130 CGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * *
18111981 GCATACGGAGTTCATT-TCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGTAGCAGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATAGGACAGAGGGTTGCGGCAGCAGGATC-G
* * * * * * *
18112044 CAGCACGCAGAGGGGGACCGGGCCGATCCCCAGTTTGTGCATTAC-GCCTTTTCGGTCGGCTCAG
63 CAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTCCGGTCGGCTGAG
* * * * **
18112108 TGCCCCCGCGCTCGTTTCATGGGTTAACTTAG
126 CGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
** * * * *
18112140 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACAGAAGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GATAGGACAGAGGGTTGCGGCAGCAGGATCG-C
*
18112205 AGCACGTA-GGGGGACCGGGTC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
64 AGCACGTAGGGGGGACCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC-
18112268 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
*
18112299 GCACACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
18112317 ATGTTTAAGC
Statistics
Matches: 515, Mismatches: 114, Indels: 47
0.76 0.17 0.07
Matches are distributed among these distances:
157 9 0.02
158 221 0.43
159 248 0.48
160 37 0.07
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCGGCAGCAGGATCGCAG
CACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:18112082 original size:317 final size:316
Alignment explanation
Indices: 18111506--18112326 Score: 1144
Period size: 317 Copynumber: 2.6 Consensus size: 316
18111496 CTCAGCCTAA
* * *
18111506 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAA--GGACAGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
18111570 AGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCTGATCGGCTGAGCGC
64 AGCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
18111635 CCGTACGCCTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTTCATGTCTAAGCCCCAGCTG
129 CCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTG
* * ** * *
18111700 GACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCATAGGGGGATTGGGCTAATCCCCGGTTTGT
194 GACCGAGGGTTGTGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCGGGCCAATCCCCAGTTTGT
* * ** *
18111765 GCATTACGCCTCTTCGGTTGGCTCAGCGCCCGCACGCTCATTTTGTGGGCTGACTTAG
259 GCATTACGCCTCTTCGGTCGGCTCAGCGCCCCCACGCTCATTTCATGGGCTAACTTAG
* *
18111823 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-AGGACAGAGGGTTGCGGCAGCAGGATCGACA
* *
18111888 GCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
65 GCACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
18111953 CGTACGCTTGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTTGG
130 CGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGG
* *
18112018 ACCGAGGGTTGTGGTAGCAGGATCTGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGTTTGTG
195 ACCGAGGGTTGTGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCGGGCCAATCCCCAGTTTGTG
* * * * *
18112083 CATTACGCCTTTTCGGTCGGCTCAGTGCCCCCGCGCTCGTTTCATGGGTTAACTTAG
260 CATTACGCCTCTTCGGTCGGCTCAGCGCCCCCACGCTCATTTCATGGGCTAACTTAG
* * * * *
18112140 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACAGAAGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GA-AGGACAGAGGGTTGCGGCAGCAGGATCGAC
* *
18112205 AGCACGTA-GGGGGACCGGGTC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
64 AGCACGTAGGGGGGACCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC-
* * * *
18112268 GCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGC
127 GCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
18112327 ATACGGAGTT
Statistics
Matches: 447, Mismatches: 52, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
316 1 0.00
317 357 0.80
318 88 0.20
319 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAAGGACAGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGCTGGA
CCGAGGGTTGTGGCAGCAGGATCTGCAGCACGCAGAGGGGGACCGGGCCAATCCCCAGTTTGTGC
ATTACGCCTCTTCGGTCGGCTCAGCGCCCCCACGCTCATTTCATGGGCTAACTTAG
Found at i:18112695 original size:26 final size:26
Alignment explanation
Indices: 18112666--18112718 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18112656 GTTGACTTAG
18112666 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
**
18112692 GCATATTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
18112718 G
1 G
18112719 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:18113023 original size:342 final size:343
Alignment explanation
Indices: 18112212--18113376 Score: 1026
Period size: 342 Copynumber: 3.3 Consensus size: 343
18112202 GATAGCACGT
* * * * ** * *
18112212 AGGGGGACCGGG-TCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGGCCCGCAC
1 AGGGGGACCGGGCTGA-TCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC-ACCCGCAC
* * * * * * *
18112276 GCTTGTTTCATGGGTTGGCTTAGGCACACGGAGTTCAT-TCCATGTTTAAGCATACGGAGTTCAT
64 GCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGATCAT
* * * * *
18112340 TACCAGTATAAGATCGAACCAGACCGAGGGTTACGACAACAGGACCAACCAGCAAGATCGACAGC
128 TCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACA--A--GATC-G---G-TAG-CA-C
* * * * * * *
18112405 ACGTAGGGGGGACC-AGGCAGATCCCC-GGCT-TACGTATTCTTCCTCT-CGATCGGCTGAACGC
182 A-G-AGGGCGGACCGA-GCCGATCCCCAGGCTGCAC--ATTCTGCCTCTCCGGTCGACTGAGCGC
** * * * * * *
18112466 CCGCATG-CTCGCTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGACCCAGCC
242 CTACACGCCCCGTTTC-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * *
18112530 GGATCGAGGGTTTGGGCAGCAAGACTGACAGTGGGATCGGTAGCACGCAG
306 GGACCGAGGG-TT--G-TG---G--T---AGCGGGACCGGTAGCATGCAG
* * * * * * *
18112580 AGGGGGATCGGGCTGATCCTCGGCTTACGCATTATTCCTC-TCTGGCCGGTTGAGCACCCGTACG
1 AGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTC-GACCGGCTCAGCACCCGCACG
* ** *
18112644 CTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATATTGAGTTCATTC
65 CTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTC
* * * * * **
18112709 CTAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGCAAGATCGGTATCAC-GCAGGGTGGGTC
130 CCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAAGATCGGTAGCACAG-AGGGCGGACC
* * * *
18112773 GAGCCGAT-CCCTGGCCTGCGCATTTTGCCTCTCCGG-CGACTGAGCGCCTACATG-CCCGTTTC
194 GAGCCGATCCCCAGG-CTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCTACACGCCCCGTTTC
18112835 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
258 -TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
*
18112900 TAGCGGGACCGGTAGCATGTAG
322 TAGCGGGACCGGTAGCATGCAG
* *
18112922 AGGGGGACCGGG-TCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCTGCGCCCGCACG
1 AGGGGGACCGGGCT-GATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACG
* * *
18112986 CTTGTTCCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTC
65 CTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTC
* * * ** *
18113051 CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAACAGGATCGGTAGCACAGAGGGCGGACCG
130 CCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAAGATCGGTAGCACAGAGGGCGGACCG
* ** * *
18113116 AGCCGATCCCCAGGTTGCACATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCACGCCCCTTTTCTG
195 AGCCGATCCCCAGGCTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCTACACGCCCCGTTTCTG
* * * *
18113181 GGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAA-CCCCAGCCAGACCAAGGGTTGTGGCAG
260 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAG
* *
18113245 CGGGACCGGCAGCATGCAA
325 CGGGACCGGTAGCATGCAG
* * * * *
18113264 AGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCAGCTCAGCACCCGCACAC
1 AGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGC
* ** * * * *
18113329 TCGTTTTATGGGTTGACTTATGCATACGAAGTTCATTCCCAATCTAAG
66 TAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
18113377 ATCGGACCGA
Statistics
Matches: 668, Mismatches: 114, Indels: 56
0.80 0.14 0.07
Matches are distributed among these distances:
341 1 0.00
342 335 0.50
343 61 0.09
344 7 0.01
345 1 0.00
347 1 0.00
350 1 0.00
351 1 0.00
353 5 0.01
354 98 0.15
355 5 0.01
356 2 0.00
357 2 0.00
358 1 0.00
359 1 0.00
362 1 0.00
363 2 0.00
365 1 0.00
367 95 0.14
368 45 0.07
369 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (343 bp):
AGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGC
TAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTCC
CAGTCTAAGATCGAACCAGACCGAGGGTTACGACAACAAGATCGGTAGCACAGAGGGCGGACCGA
GCCGATCCCCAGGCTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCTACACGCCCCGTTTCTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGC
GGGACCGGTAGCATGCAG
Found at i:18113037 original size:26 final size:26
Alignment explanation
Indices: 18113008--18113060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18112998 GTTGACTTAG
* *
18113008 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
*
18113034 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
18113060 G
1 G
18113061 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:18113427 original size:158 final size:158
Alignment explanation
Indices: 18113034--18114159 Score: 980
Period size: 158 Copynumber: 7.1 Consensus size: 158
18113024 CCCAGTCTAA
* * * * * * * *
18113034 GCATACGGAGATCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
18113099 GCACAG-AGGGCGGACCGAGCCGATCCCCAGG-TTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
66 GCAC-GCAGGGGGGACCGGGCCGATCCCC-GGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
* * * *
18113162 CCTGCACGCCCCTTTTC-TGGGTTGGCTTAG
129 CCCGCACG-CTCGTTTCATGGGTTGACTTAG
* * *** * * * *
18113192 GCATAGGGAGTTCACT-CCATGTCTAACCCCAG-CCAGACCA-AGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGA-CAGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
18113254 CAGCATGCAAAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCAGCTCAGC
64 CAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
* * * *
18113319 ACCCGCACACTCGTTTTATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
18113350 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
18113415 GCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCTGATCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCC
* *
18113480 CGTACGC-CTGTTTCATGGGTTGGCTTAG
131 CGCACGCTC-GTTTCATGGGTTGACTTAG
* * ** * * * * *
18113508 GCATATGGAGTTCATT-TCATGTCTAAGGCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
18113571 CAGCACGCATAGGGGGACCGGGCCAATCCCCGGTTTGTGCATTACGCCTCTCCGGTTGGCTCAGC
64 CAGCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
* ** *
18113636 GCCCGCACGCTCATTTTGTGGGCTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
** * * *
18113667 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
18113732 GCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCC
** * * *
18113797 CATACGCTTGTTTCATGGGTTGGCTTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** ** * * * *
18113825 GCATACGGAGTTCATT-TCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGTAGCAGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
18113888 CAGCACGCAGAGGGGGACCGGGCCGATCCCCAGTTTGTGCATTACGCCTTTTCGGTCGGCTCAGT
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
* *
18113953 GCCCCCGCGCTCGTTTCATGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * **
18113984 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAAGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
18114049 GCACGTAGGGGGGACCGGGTC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGGGGGGACCGGGCCGA-TCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
* *
18114113 CCGCACGCTTGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
*
18114142 GCACACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
18114160 ATGTTTAAGC
Statistics
Matches: 751, Mismatches: 195, Indels: 44
0.76 0.20 0.04
Matches are distributed among these distances:
156 1 0.00
157 41 0.05
158 432 0.58
159 272 0.36
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:18113713 original size:317 final size:317
Alignment explanation
Indices: 18113034--18114169 Score: 1409
Period size: 317 Copynumber: 3.6 Consensus size: 317
18113024 CCCAGTCTAA
* * * * * * * **
18113034 GCATACGGAGATCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * *
18113099 GCACAG-AGGGCGGACCGAGCCGATCCCCAGGTTGCACATTCTGCCTCTCCGGTCGGTTGAGCGC
66 GCAC-GTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
18113163 CTGCACGCCCCT-TTTC-TGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAA-CCCCAGC
130 CCGCACG--CCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * * * * * *
18113225 CAGACCAAGGGTTGTGGCAGCGGGACCGGCAGCATGCAAAGGGGGACTGGGCTGATCCCCGGCTT
193 TGGACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGGTTT
* * * * * * *
18113290 GCGCATTATGCCTCTTCGATCAGCTCAGCACCCGCACACTCGTTTTATGGGTTGACTTAT
258 GTGCATTACGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
* * * * * *
18113350 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
18113415 GCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTACCTCTCTGATCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * *
18113480 CGTACGCCTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTTCATGTCTAAGGCCCAGCTGG
131 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* *
18113545 ACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCATAGGGGGACCGGGCCAATCCCCGGTTTGTG
196 ACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGGTTTGTG
* * * * *
18113610 CATTACGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTTGTGGGCTGACTTAG
261 CATTACGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
** * *
18113667 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACAGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
18113732 GCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
** * * * *
18113797 CATACGCTTGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTTGG
131 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * * *
18113862 ACCGAGGGTTGTGGTAGCAGGATCTGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGTTTGTG
196 ACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGGTTTGTG
* * * * *
18113927 CATTACGCCTTTTCGGTCGGCTCAGTGCCCCCGCGCTCGTTTCATGGGTTGACTTAG
261 CATTACGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
* * *
18113984 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAAGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * *
18114049 GCACGTAGGGGGGACCGGGTC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGTAGGGGGGACCGGGCCGA-TCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
18114113 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGC
130 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
18114170 ATACGGAGTT
Statistics
Matches: 710, Mismatches: 105, Indels: 9
0.86 0.13 0.01
Matches are distributed among these distances:
314 3 0.00
315 5 0.01
316 151 0.21
317 551 0.78
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
ACCGAGGGTTGTGGCAGCGGGATCTGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGGTTTGTG
CATTACGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAG
Found at i:18114538 original size:26 final size:26
Alignment explanation
Indices: 18114509--18114561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18114499 GTTGACTTAG
18114509 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* * *
18114535 GCATATTGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
18114561 G
1 G
18114562 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:18114874 original size:343 final size:340
Alignment explanation
Indices: 18113964--18115220 Score: 1138
Period size: 343 Copynumber: 3.6 Consensus size: 340
18113954 CCCCCGCGCT
* * ** * *
18113964 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAA
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAG
* * * * * *
18114027 GGTTGCGGTAGCAGGATCGATAGCACGTAG-GGGGGACCGGGTC-AGTCCCCGGCTTGCGCATTC
64 GGTTGTGGTAGCGGGACCGATAGCACGCAGAGGGGGACCGGGTCGA-TCCTCGGCTTGCGCATTA
* * * *
18114090 TGCCTCTCCG-GTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCACACGGAGTT
128 TGCCTCTTCGAG-CGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
18114154 CAT-TCCATGTTTAAGCATACGGAGTTCATTACCAGTATAAGATCGAACCAGACCGAGGGTTACG
192 CATCCCCA-GTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCAGACCGAGGGTT---
* * * *
18114218 ACAACAGGACCAGCAGCAAGATCGGTAGCACGTAGGGGGGACC-AGGCAGATCCCCGGCTTACGT
252 ---AC--G---A-CAGCAAGATCGGTAGCACG-AGGGGGG-CCGA-GCCGATCCCAGGCTTGCGC
* * * *
18114282 ATTCTT-CCTCTCCGATCGGCTGAACGCCCGCATGCT
305 ATT-TTGCCTCTCCGGTCGGCTGAGCGCCTGCATGCC
* * * * *
18114318 CGCTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGACCCAGCCGGATCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * *
18114383 TTGTGGCAGCAAGACTGGTAGTGGGATCGGTAGCACGCAGAGGGGGATCGGG-CTGATCCTCGGC
66 -T-T--------G--TGGTAGCGGGACCGATAGCACGCAGAGGGGGACCGGGTC-GATCCTCGGC
* * * * * * * *
18114447 TTACGCATTATTCCTC-TCTAGCCGGTTGAGCACCCGTACACTAGTTTCGTGGGTTGACTTAGGC
118 TTGCGCATTATGCCTCTTCGAG-CGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGC
* ** *
18114511 ATATGGAGTTCATCCCCAGTCTAAGCATATTGAGTTCATTCCTAGTCTAAGATCGAACCAGATCG
182 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGAACCAGACCG
* * *
18114576 AGGGTTACGACAGCAAGATCGGTATCACGCAGGGTGGGCCGAGCCGATCCCTGGCCTGCGCATTT
246 AGGGTTACGACAGCAAGATCGGTAGCACG-AGGG-GGGCCGAGCCGATCCCAGGCTTGCGCATTT
* * *
18114641 TGCCTCTCCGGCCGACTGAGCGCCTACATGCC
309 TGCCTCTCCGGTCGGCTGAGCGCCTGCATGCC
*
18114673 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * *
18114738 TTGTGGTAGCGGGACCGGTAGCATGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGC
66 TTGTGGTAGCGGGACCGATAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGC
** * * * *
18114803 CTCTTCGA-CGGGCTCTGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATATGGAGTTCAT
131 CTCTTCGAGC-GGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * ** *
18114867 CCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAA
195 CCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAG
* * * *
18114932 CAGGATCGGTAGCACAGAGGGCGGACCGAGCCGATCCCCAGG-TTGCACATTCTGCCTCTCCGGT
259 CAAGATCGGTAGCAC-GAGGG-GGGCCGAGCCGAT-CCCAGGCTTGCGCATTTTGCCTCTCCGGT
* *
18114996 CGGTTGAGCGCCTGCACGCCC
321 CGGCTGAGCGCCTGCATG-CC
* * * *
18115017 CTTTTC-TGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAA-CCCCAGCCAGACCAAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * * * *
18115080 TTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGC
66 TTGTGGTAGCGGGACCGATAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGC
* * * * * * * * *
18115145 CTCTTCTATCAGCTTAGCGCTCGCACACTCGTTTTATGGGTTGACTTATGCATACGGAGTTCATT
131 CTCTTCGAGCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
*
18115210 CCCAATCTAAG
196 CCCAGTCTAAG
18115221 ATCGGACCGA
Statistics
Matches: 750, Mismatches: 122, Indels: 74
0.79 0.13 0.08
Matches are distributed among these distances:
342 135 0.18
343 254 0.34
344 19 0.03
345 1 0.00
353 4 0.01
354 50 0.07
355 127 0.17
356 6 0.01
359 1 0.00
361 2 0.00
364 1 0.00
366 24 0.03
367 122 0.16
368 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (340 bp):
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGTAGCGGGACCGATAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGC
CTCTTCGAGCGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCA
AGATCGGTAGCACGAGGGGGGCCGAGCCGATCCCAGGCTTGCGCATTTTGCCTCTCCGGTCGGCT
GAGCGCCTGCATGCC
Found at i:18114881 original size:26 final size:26
Alignment explanation
Indices: 18114852--18114904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18114842 GTTGACTTAG
* *
18114852 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
*
18114878 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
18114904 G
1 G
18114905 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:18115402 original size:26 final size:26
Alignment explanation
Indices: 18115352--18115404 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18115342 GTTGGCTTAG
*
18115352 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
18115378 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
18115404 G
1 G
18115405 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:18116108 original size:26 final size:26
Alignment explanation
Indices: 18116072--18116124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18116062 GTTGACTTAG
18116072 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
18116098 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
18116124 G
1 G
18116125 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:18116399 original size:159 final size:157
Alignment explanation
Indices: 18116098--18116591 Score: 546
Period size: 159 Copynumber: 3.1 Consensus size: 157
18116088 CCCAGTCTAA
* * *
18116098 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATC-GTA
* * * * * *
18116163 GTACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTCGGCTGAGCACC
65 GCACGCAGGGGGGACCGGGCTGATCCCCGAGTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
18116228 CGTACGCCTGTTTCATGAGTTGGCTTAG
130 CGTACGCTTGTTTCGTGGGTTGGCTTAG
* ** * *
18116256 GCATACGGAGTTCATT-TCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGCGGCAGCGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGTAGCAGGATC-G
* * * *
18116319 TAGCACGCAGAAGGGGACCGGGCTGATCCCCGAGTTGTGCATTATGCCTCTCCGGTCGGCTCAGC
63 TAGCACGCAG-GGGGGACCGGGCTGATCCCCGAGTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
18116384 GCCCGTACGCTTGTTTTGTGGGTTGACTTAG
127 GCCCGTACGCTTGTTTCGTGGGTTGGCTTAG
** ** *
18116415 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCG-TA
** * * * *
18116480 GCACATAGGGGGGGATCGGG-TCGGTCCCCG-GCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
65 GCACGCA-GGGGGGACCGGGCT-GATCCCCGAG-TTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
*
18116543 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
127 GCCCGTACGCTTGTTTCGTGGGTTGGCTTAG
* *
18116574 GCACAGGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
18116592 ATGTTTAAGC
Statistics
Matches: 280, Mismatches: 47, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 61 0.22
159 213 0.76
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGTAG
CACGCAGGGGGGACCGGGCTGATCCCCGAGTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GTACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:18117329 original size:26 final size:26
Alignment explanation
Indices: 18117298--18117350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117288 GTTGACGTAG
*
18117298 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
18117324 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
18117350 G
1 G
18117351 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:18117563 original size:343 final size:343
Alignment explanation
Indices: 18116944--18117667 Score: 857
Period size: 343 Copynumber: 2.1 Consensus size: 343
18116934 TCATTTCATT
** *
18116944 GGTTGACTTAGGCATACGGAGTTCATCGACAGTCTAAGCATACGAAGGTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGGTCATTCCCAATCTAAGA
* * * * * * * *
18117009 TCAAATCGGATCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGGGGTCGGGTCGATCCCT
66 TCAAACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACGGAGGGGGGATCGGCTCGATCCCC
* * *
18117074 GGCTTGCGCATTCTGCCTCTCCGGCCGACTAAGTGCCCGCACACCCGTTTCGTGGGTTGGCATAG
131 AGCTTACGCATTCTGCCTCTCCGGCCGACTAAGTGCCCACACACCCGTTTCGTGGGTTGGCATAG
* ** *
18117139 GCATAGGGAGTTCATTCCAAGTCTAACCCGCAGTCGAACCGAGGGTTGTGGTAGCGGGATCGGTA
196 GCATAGGGAGTTCATTCCAAGTCTAACCCGCAGCCGAACCGAGGGTTGTGACAGCGGGATCGGCA
* * * * * ** * *
18117204 GCATGTAGAGGGGGATCGGGTTGAT-CCTCGGCTTACGCGTTATGCCTCTTC-GACTGGCTCAAC
261 GCACGCAAAAGGGGATCAGGCCGATCCCT-GGCTTACGCATTATGCCTCTTCAG-CCGGCTCAAC
* *
18117267 GCCCATACGCTTGTTCCATG
324 GCCCACACGCTCGTTCCATG
* * *
18117287 GGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGGTCATTCCCAATCTAAGA
* ** * *
18117352 TCAGACCGAACCGAGGGTTGTGACAGCAGGATCGATAGCACGGAGGGTGGATCGAGCT-GATCCC
66 TCAAACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACGGAGGGGGGATCG-GCTCGATCCC
* * ** * ** *
18117416 CAGCTTACGCATTCTGTCTCTTCGGCCGGTTGAGTGCCCACACACCCGTTTTTTGGGTTGGCTTA
130 CAGCTTACGCATTCTGCCTCTCCGGCCGACTAAGTGCCCACACACCCGTTTCGTGGGTTGGCATA
*
18117481 GGCATAGGGAGTTCATTCCATGTCTAAGCCC-CAGCC-AGACCGAGGGTTGTGACAGCGGGA-CT
195 GGCATAGGGAGTTCATTCCAAGTCTAA-CCCGCAGCCGA-ACCGAGGGTTGTGACAGCGGGATC-
* *
18117543 GGCAGCACGCAAAAGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCAGCCGGCTTA
257 GGCAGCACGCAAAAGGGGATCAGGCCGATCCCTGGCTTACGCATTATGCCTCTTCAGCCGGCTCA
* * **
18117608 GCGCCCGCACGCTCGTTTTATG
322 ACGCCCACACGCTCGTTCCATG
* * *
18117630 GGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
18117668 ATCAGACCAA
Statistics
Matches: 319, Mismatches: 56, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
342 2 0.01
343 308 0.97
344 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGGTCATTCCCAATCTAAGA
TCAAACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACGGAGGGGGGATCGGCTCGATCCCC
AGCTTACGCATTCTGCCTCTCCGGCCGACTAAGTGCCCACACACCCGTTTCGTGGGTTGGCATAG
GCATAGGGAGTTCATTCCAAGTCTAACCCGCAGCCGAACCGAGGGTTGTGACAGCGGGATCGGCA
GCACGCAAAAGGGGATCAGGCCGATCCCTGGCTTACGCATTATGCCTCTTCAGCCGGCTCAACGC
CCACACGCTCGTTCCATG
Found at i:18117645 original size:159 final size:159
Alignment explanation
Indices: 18117324--18117827 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 159
18117314 CCCAGTCTAA
* * * * * *
18117324 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGAACCGAGGGTTGTGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCAAGGGTTGTGACAGGAGAATCGA
* ** * * * * * *
18117387 TAGCAC-GGAGGGTGGATC-GAGCTGATCCCCAGCTTACGCATTCTGTCTCTTCGGCCGG-TTGA
65 CAGCACACAAAGG-GGACCAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTT-A
* * * * *
18117449 GTGCCCACACACCCGTTTTTTGGGTTGGCTTAG
127 GCGCCCGCACGCTCGTTTTATGGGTTGGCTTAG
* * * * * * *
18117482 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGACAGCGGGACT-GG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGTTGTGACAG-GAGAATCGA
* * * * *
18117545 CAGCACGCAAAAGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCAGCCGGCTTAGC
65 CAGCACAC-AAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTTAGC
* *
18117610 GCCCGCACGCTCGTTTTATGGGTTGACTTAT
129 GCCCGCACGCTCGTTTTATGGGTTGGCTTAG
* * * ** *
18117641 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACTAAGGGTTGTGGTAGTAGAATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCAAGGGTTGTGACAGGAGAATCGA
* * * * * * * *
18117704 CAGGATACAAGGGGGACCAGGCTGATCCCCGACTTGCGCATTCTACGTCTTCGGCCGGCTGAGCG
65 CAGCACACAAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTTAGCG
** *
18117769 CCCGCACGCTCGTTTCGTGCGTTGGCTTAG
130 CCCGCACGCTCGTTTTATGGGTTGGCTTAG
18117799 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
18117828 TGCGGAGTTC
Statistics
Matches: 273, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 146 0.53
159 112 0.41
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGTTGTGACAGGAGAATCGAC
AGCACACAAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTTAGCGC
CCGCACGCTCGTTTTATGGGTTGGCTTAG
Found at i:18117835 original size:26 final size:26
Alignment explanation
Indices: 18117799--18117851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
18117789 GTTGGCTTAG
18117799 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
18117825 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
18117851 G
1 G
18117852 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18122262 original size:45 final size:44
Alignment explanation
Indices: 18122208--18122681 Score: 456
Period size: 45 Copynumber: 10.6 Consensus size: 44
18122198 CTTGGTACGA
* *
18122208 GCGGTTGCCTCGAGCACCATCAGCACAAGCCT-GCCCTTGGTGCGG
1 GCGGTTGCCTCGACCACCATCGGCACAAG-CTGGCCC-TGGTGCGG
** * * ** *
18122253 GCTCTTGCCTCGACCACCATCGGCACACGTTGGGCATTAGTGCGG
1 GCGGTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGG
* * * * *
18122298 GCGATTACCCCGAACACCATCGGCACAAGCTGGGCCCTGGTACGG
1 GCGGTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGG
* * * *
18122343 GTGATTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCAG
1 GCGGTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGG
* *
18122388 GCGATTGCCTCGACCACCATCGGCACAAGC---CCCTGGTGTGG
1 GCGGTTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCGG
* * ** * ** *
18122429 CCCGATCCCCCCGACCACCATCGGCACACCCTGGGCACTGGTGCGG
1 -GCGGTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGG
* *
18122475 GCGGTTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTGCGG
1 GCGGTTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCGG
18122520 GCGGTTGCCTCGACCACCATCGGCACACA-CTGGGCCCTGGTGCGG
1 GCGGTTGCCTCGACCACCATCGGCACA-AGCT-GGCCCTGGTGCGG
* * * *
18122565 GCGGTTGCCTCGAACACCATCGGCACAAGCCGACCCTTGGTGCGA
1 GCGGTTGCCTCGACCACCATCGGCACAAGCTGGCCC-TGGTGCGG
18122610 GCGGTTGCCTCGACCACCATCGGCACACA-CTAGGCCCTGGTGCGG
1 GCGGTTGCCTCGACCACCATCGGCACA-AGCT-GGCCCTGGTGCGG
* **
18122655 GCGCTTGCCTCGAGTACCATCGGCACA
1 GCGGTTGCCTCGACCACCATCGGCACA
18122682 TGGTATTGAC
Statistics
Matches: 355, Mismatches: 62, Indels: 24
0.80 0.14 0.05
Matches are distributed among these distances:
41 9 0.03
42 24 0.07
44 6 0.02
45 300 0.85
46 16 0.05
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.16
Consensus pattern (44 bp):
GCGGTTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCGG
Found at i:18122377 original size:90 final size:88
Alignment explanation
Indices: 18122212--18122681 Score: 512
Period size: 90 Copynumber: 5.3 Consensus size: 88
18122202 GTACGAGCGG
* * * **
18122212 TTGCCTCGAGCACCATCAGCACAAGCCTGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAG-CGGCCC-TGGTGCGGGCGATTGCCTCGACCACCATCGGC
* * *
18122277 ACACGTTGGGCATTAGTGCGGGCGA
64 ACACGCTGGGCACTGGTGCGGGCGA
* * * *
18122302 TTACCCCGAACACCATCGGCACAAGCTGGGCCCTGGTACGGGTGATTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAGC--GGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGC
* * *
18122367 ACATGCTGGGCCCTGGTGCAGGCGA
64 ACACGCTGGGCACTGGTGCGGGCGA
* * * ** *
18122392 TTGCCTCGACCACCATCGGCACAAGC--CCCTGGTGTGGCCCGATCCCCCCGACCACCATCGGCA
1 TTGCCTCGAACACCATCGGCACAAGCGGCCCTGGTGCGG-GCGATTGCCTCGACCACCATCGGCA
* *
18122455 CACCCTGGGCACTGGTGCGGGCGG
65 CACGCTGGGCACTGGTGCGGGCGA
* *
18122479 TTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAGC--GGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGC
* * *
18122544 ACACACTGGGCCCTGGTGCGGGCGG
64 ACACGCTGGGCACTGGTGCGGGCGA
* * *
18122569 TTGCCTCGAACACCATCGGCACAAGCCGACCCTTGGTGCGAGCGGTTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAG-CGGCCC-TGGTGCGGGCGATTGCCTCGACCACCATCGGC
* * * *
18122634 ACACACTAGGCCCTGGTGCGGGCGC
64 ACACGCTGGGCACTGGTGCGGGCGA
**
18122659 TTGCCTCGAGTACCATCGGCACA
1 TTGCCTCGAACACCATCGGCACA
18122682 TGGTATTGAC
Statistics
Matches: 324, Mismatches: 47, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
86 9 0.03
87 63 0.19
89 5 0.02
90 232 0.72
91 15 0.05
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.17
Consensus pattern (88 bp):
TTGCCTCGAACACCATCGGCACAAGCGGCCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCAC
ACGCTGGGCACTGGTGCGGGCGA
Found at i:18122513 original size:177 final size:179
Alignment explanation
Indices: 18122212--18122681 Score: 543
Period size: 177 Copynumber: 2.6 Consensus size: 179
18122202 GTACGAGCGG
* * * * ** ** *
18122212 TTGCCTCGAGCACCATCAGCACAAGCCTGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAGCC-ACCCTTGGTGCGAGCGATCCCCCCGACCACCATCGGC
** * * * * *
18122277 ACACGTTGGGCATTAGTGCGGGCGATTACCCCGAACACCATCGGCACAAGCTGGGCCCTGGTACG
65 ACACACTGGGCACTGGTGCGGGCGATTGCCTCGAACACCATCGGCACAAGCTAGGCCCTGGTACG
* **
18122342 GGTGATTGCCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCAGGCGA
130 GGCGATTGCCTCGACCACCATCGGCACACACTGGGCCCTGGTGCAGGCGA
* *
18122392 TTGCCTCGACCACCATCGGCACAAG-C-CCC-TGGTGTG-GCCCGATCCCCCCGACCACCATCGG
1 TTGCCTCGAACACCATCGGCACAAGCCACCCTTGGTGCGAG--CGATCCCCCCGACCACCATCGG
* * * *
18122453 CACACCCTGGGCACTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTGC
64 CACACACTGGGCACTGGTGCGGGCGATTGCCTCGAACACCATCGGCACAAGCTAGGCCCTGGTAC
* * *
18122518 GGGCGGTTGCCTCGACCACCATCGGCACACACTGGGCCCTGGTGCGGGCGG
129 GGGCGATTGCCTCGACCACCATCGGCACACACTGGGCCCTGGTGCAGGCGA
* ** *
18122569 TTGCCTCGAACACCATCGGCACAAGCCGACCCTTGGTGCGAGCGGTTGCCTCGACCACCATCGGC
1 TTGCCTCGAACACCATCGGCACAAGCC-ACCCTTGGTGCGAGCGATCCCCCCGACCACCATCGGC
* * * **
18122634 ACACACTAGGCCCTGGTGCGGGCGCTTGCCTCGAGTACCATCGGCACA
65 ACACACTGGGCACTGGTGCGGGCGATTGCCTCGAACACCATCGGCACA
18122682 TGGTATTGAC
Statistics
Matches: 247, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
175 1 0.00
176 6 0.02
177 144 0.58
178 1 0.00
179 1 0.00
180 87 0.35
181 6 0.02
182 1 0.00
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.17
Consensus pattern (179 bp):
TTGCCTCGAACACCATCGGCACAAGCCACCCTTGGTGCGAGCGATCCCCCCGACCACCATCGGCA
CACACTGGGCACTGGTGCGGGCGATTGCCTCGAACACCATCGGCACAAGCTAGGCCCTGGTACGG
GCGATTGCCTCGACCACCATCGGCACACACTGGGCCCTGGTGCAGGCGA
Found at i:18134729 original size:22 final size:23
Alignment explanation
Indices: 18134701--18134747 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
18134691 TTTCATTTCA
18134701 TTTTTATTAATTTAATAAA-ATT
1 TTTTTATTAATTTAATAAATATT
*
18134723 TTTTTATTAATTTACTAAATATT
1 TTTTTATTAATTTAATAAATATT
18134746 TT
1 TT
18134748 AGATTCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTATTAATTTAATAAATATT
Found at i:18141686 original size:20 final size:20
Alignment explanation
Indices: 18141661--18141702 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
18141651 ATTCCAATTG
18141661 ACTGAAAGTTATAAACTAGC
1 ACTGAAAGTTATAAACTAGC
18141681 ACTGAAAGTTATAAACTAGC
1 ACTGAAAGTTATAAACTAGC
18141701 AC
1 AC
18141703 GGGTCTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (20 bp):
ACTGAAAGTTATAAACTAGC
Found at i:18144590 original size:128 final size:127
Alignment explanation
Indices: 18144340--18144583 Score: 312
Period size: 128 Copynumber: 1.9 Consensus size: 127
18144330 AATAAGTAAA
*
18144340 TATCATTACAAATATAATAAAAACTTTTATAATAAAATTTTTGTCATTGTATAAAATATTAAAAA
1 TATCATTACAAATATAATAAAAACTTTTAGAATAAAATTTTTGTCATTGTATAAAATATTAAAAA
* * * *
18144405 ATATTAAGAAACAACTTTGAAAATTCATTGCAAATAAAACAAGCTTTTGCAACAATAAGTTT
66 ATATTAAGAAACAACATTGAAAAATCACTGCAAATAAAACAAGCTTTTACAACAATAAGTTT
* *
18144467 TATCATTACAAATATAAT-AAAAGTTTTCAGAATAACAATTTTTGTCATTGTATAAAATATTAAG
1 TATCATTACAAATATAATAAAAACTTTT-AGAATAA-AATTTTTGTCATTGTATAAAATATTAAA
* ** ** * *
18144531 AAATAACTTAAGCAACGGCATTGAAAAATGGCTGCAATTTAAACAAG-TTTTAC
64 AAAT-A-TTAAGAAACAACATTGAAAAATCACTGCAAATAAAACAAGCTTTTAC
18144584 GCAATAACTT
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
126 8 0.08
127 24 0.24
128 31 0.31
129 6 0.06
130 30 0.30
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (127 bp):
TATCATTACAAATATAATAAAAACTTTTAGAATAAAATTTTTGTCATTGTATAAAATATTAAAAA
ATATTAAGAAACAACATTGAAAAATCACTGCAAATAAAACAAGCTTTTACAACAATAAGTTT
Found at i:18144814 original size:130 final size:129
Alignment explanation
Indices: 18144616--18144856 Score: 299
Period size: 130 Copynumber: 1.9 Consensus size: 129
18144606 TATAAACAAT
** *
18144616 ATAAAATTTTTTGTAACAACTTGTTTGTCATTGTATAACACATTAAAATATAATTTAAGCATCAA
1 ATAAAATTTTTTGTAACAACTTGTTTGTCATTCCATAAAACATTAAAATATAATTTAAGCATCAA
* * * * *
18144681 CTTTGAAAAATTGTTTCAAATAAAAAAAATATTCACAACAA-ATTTTTTTATTATTACAAATATA
66 CTTTAAAAAAGTATTGCAAATAAAAAAAAGATT-ACAACAACATTTTTTTATTATTACAAATATA
* ** *
18144745 ATAAAATTTTTTGTAACAACTTTTTTTGTTGTTCCATAAAATATTTAAAA-ATAATTTAAGCAAT
1 ATAAAATTTTTTGTAACAAC-TTGTTTGTCATTCCATAAAACA-TTAAAATATAATTTAAGC-AT
* *
18144809 -GACTTTAAAAAAGTATTGCAAATAAAAAAAGGATTACAACAACATTTT
63 CAACTTTAAAAAAGTATTGCAAATAAAAAAAAGATTACAACAACATTTT
18144857 GTTGTCATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
129 27 0.29
130 59 0.63
131 8 0.09
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.39
Consensus pattern (129 bp):
ATAAAATTTTTTGTAACAACTTGTTTGTCATTCCATAAAACATTAAAATATAATTTAAGCATCAA
CTTTAAAAAAGTATTGCAAATAAAAAAAAGATTACAACAACATTTTTTTATTATTACAAATATA
Found at i:18150774 original size:16 final size:15
Alignment explanation
Indices: 18150749--18150788 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
18150739 TTTAGTATCA
18150749 TTTCCATTTTTCCTTCT
1 TTTCC-TTTTTCCTT-T
18150766 TTTCCTTTTTCCTTT
1 TTTCCTTTTTCCTTT
18150781 TTT-CTTTT
1 TTTCCTTTT
18150789 AGAACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.22
15 4 0.17
16 9 0.39
17 5 0.22
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCCTTTTTCCTTT
Found at i:18160230 original size:25 final size:25
Alignment explanation
Indices: 18160170--18160221 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
18160160 AATTCATGTA
* *
18160170 TCTACAACATATTAAAGGTTCAGCC
1 TCTACAACACATTAAAGGCTCAGCC
18160195 TCTACAACACATTAAAGGCTCAGCC
1 TCTACAACACATTAAAGGCTCAGCC
18160220 TC
1 TC
18160222 AAACTCACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (25 bp):
TCTACAACACATTAAAGGCTCAGCC
Found at i:18165489 original size:25 final size:25
Alignment explanation
Indices: 18165461--18165591 Score: 99
Period size: 25 Copynumber: 5.2 Consensus size: 25
18165451 AATATATAAT
18165461 AAATGACACAATTTA-AATATGCATG
1 AAATGACA-AATTTACAATATGCATG
* * * *
18165486 AAATGACATACTTAAAATATACATG
1 AAATGACAAATTTACAATATGCATG
* * *
18165511 AAATTATATATTTACAATATGCAAT-
1 AAATGACAAATTTACAATATGC-ATG
*
18165536 AGAATGACATA-TTACAATATGCAATG
1 A-AATGACAAATTTACAATATGC-ATG
* *
18165562 GAATGATATAA-TTACAATATGCATG
1 AAATGACA-AATTTACAATATGCATG
18165587 AAATG
1 AAATG
18165592 TAAAACACAC
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
24 4 0.05
25 62 0.71
26 21 0.24
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (25 bp):
AAATGACAAATTTACAATATGCATG
Found at i:18165571 original size:51 final size:51
Alignment explanation
Indices: 18165471--18165591 Score: 144
Period size: 51 Copynumber: 2.4 Consensus size: 51
18165461 AAATGACACA
*
18165471 ATTTA-AATATGC-ATGAAATGACATACTTAAAATATACATGAAATTATAT
1 ATTTACAATATGCAATGAAATGACATACTTAAAATATACATGAAATGATAT
* * *
18165520 ATTTACAATATGCAAT-AGAATGACATA-TTACAATATGCAATGGAATGATAT
1 ATTTACAATATGCAATGA-AATGACATACTTAAAATATAC-ATGAAATGATAT
*
18165571 AATTACAATATGC-ATGAAATG
1 ATTTACAATATGCAATGAAATG
18165592 TAAAACACAC
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
49 5 0.08
50 23 0.37
51 34 0.55
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (51 bp):
ATTTACAATATGCAATGAAATGACATACTTAAAATATACATGAAATGATAT
Found at i:18166292 original size:26 final size:23
Alignment explanation
Indices: 18166255--18166306 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 23
18166245 AATTAATTCC
18166255 TTTTTCGTTTTCTCTTTTCTTTTCT
1 TTTTTCGTTTTCTCTTTT-TTTT-T
*
18166280 TTTTTGGTCTTTCTCTTTTTTTTT
1 TTTTTCGT-TTTCTCTTTTTTTTT
18166304 TTT
1 TTT
18166307 AGAAACAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 4 0.16
25 11 0.44
26 10 0.40
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (23 bp):
TTTTTCGTTTTCTCTTTTTTTTT
Found at i:18166305 original size:21 final size:20
Alignment explanation
Indices: 18166267--18166304 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18166257 TTTCGTTTTC
18166267 TCTTTTCTTTTCTTTTTTGG
1 TCTTTTCTTTTCTTTTTTGG
18166287 TCTTTCTCTTTT-TTTTTT
1 TCTTT-TCTTTTCTTTTTT
18166305 TTAGAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.79
Consensus pattern (20 bp):
TCTTTTCTTTTCTTTTTTGG
Found at i:18166773 original size:6 final size:6
Alignment explanation
Indices: 18166759--18166808 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
18166749 GTTGGTCTGG
* * *
18166759 GGTTTA GGTTAA GGTTTA GGTTTA GTTTTA GGGTTTG GGTTTA TGGTTTA
1 GGTTTA GGTTTA GGTTTA GGTTTA GGTTTA -GGTTTA GGTTTA -GGTTTA
18166809 AAGTTATGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
6 26 0.72
7 10 0.28
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (6 bp):
GGTTTA
Found at i:18166799 original size:19 final size:18
Alignment explanation
Indices: 18166758--18166806 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
18166748 GGTTGGTCTG
18166758 GGGTTTAGGTTAAGGTTT
1 GGGTTTAGGTTAAGGTTT
* * *
18166776 AGGTTTAGTTTTAGGGTTT
1 GGGTTTAG-GTTAAGGTTT
18166795 GGGTTTATGGTT
1 GGGTTTA-GGTT
18166807 TAAAGTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 7 0.29
19 16 0.67
20 1 0.04
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (18 bp):
GGGTTTAGGTTAAGGTTT
Found at i:18167104 original size:32 final size:33
Alignment explanation
Indices: 18167038--18167108 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
18167028 AAGCTTATAG
* *
18167038 TATGAT-TTTGAGGATTTTCTAAGAACTACGAT
1 TATGATATTTGAAGATTTTCTAAGAACTACAAT
*
18167070 TATGATATTTGAAGA-TTTCTAAGAAGTTA-AAT
1 TATGATATTTGAAGATTTTCTAAGAA-CTACAAT
18167102 TATGATA
1 TATGATA
18167109 ATTAGATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 25 0.74
33 9 0.26
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.41
Consensus pattern (33 bp):
TATGATATTTGAAGATTTTCTAAGAACTACAAT
Found at i:18171971 original size:21 final size:21
Alignment explanation
Indices: 18171943--18171990 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
18171933 GTTATGGTGT
18171943 AAGTTTAGGGTTTT-AGGGTA
1 AAGTTTAGGGTTTTAAGGGTA
*
18171963 AAGTATTAGGGTTTTAAGGTTA
1 AAGT-TTAGGGTTTTAAGGGTA
18171985 AAGTTT
1 AAGTTT
18171991 CGGTTTAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 4 0.16
21 12 0.48
22 9 0.36
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (21 bp):
AAGTTTAGGGTTTTAAGGGTA
Found at i:18172053 original size:7 final size:7
Alignment explanation
Indices: 18172038--18172128 Score: 80
Period size: 7 Copynumber: 13.3 Consensus size: 7
18172028 AGGGATAAGG
18172038 TTAGGGT
1 TTAGGGT
*
18172045 TTTGGGT
1 TTAGGGT
*
18172052 TTAAGG-
1 TTAGGGT
18172058 TTAGGGT
1 TTAGGGT
18172065 TTA-GGT
1 TTAGGGT
*
18172071 TTTGGGAT
1 TTAGGG-T
*
18172079 TTA-TGT
1 TTAGGGT
*
18172085 TTGGGGT
1 TTAGGGT
18172092 TTAGGGT
1 TTAGGGT
*
18172099 TTAGGAT
1 TTAGGGT
*
18172106 TTGGGGT
1 TTAGGGT
18172113 TTAGGGT
1 TTAGGGT
*
18172120 TTAGAGT
1 TTAGGGT
18172127 TT
1 TT
18172129 TAGGTTAGGT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
6 13 0.20
7 49 0.75
8 3 0.05
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:18174328 original size:3 final size:3
Alignment explanation
Indices: 18174320--18174401 Score: 128
Period size: 3 Copynumber: 27.3 Consensus size: 3
18174310 AGAAGTAAGG
* * *
18174320 ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATT ATA ATA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
18174368 ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
18174402 ATCTAATTAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:18176519 original size:24 final size:26
Alignment explanation
Indices: 18176478--18176525 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
18176468 TGCAAATACA
18176478 TTTGTTTTTTTTAAAAGCT-TTCTGT
1 TTTGTTTTTTTTAAAAGCTCTTCTGT
*
18176503 TTTG-TTTTTTTACAAGCTCTTCT
1 TTTGTTTTTTTTAAAAGCTCTTCT
18176526 TCTTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.62
Consensus pattern (26 bp):
TTTGTTTTTTTTAAAAGCTCTTCTGT
Found at i:18176534 original size:24 final size:24
Alignment explanation
Indices: 18176483--18176535 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
18176473 ATACATTTGT
* *
18176483 TTTTTTTAAAAGCTTTCTGTTTTG
1 TTTTTTTAAAAGCTTTCTGTCTTA
*
18176507 TTTTTTTACAAGCTCTTCT-TCTTA
1 TTTTTTTAAAAGCT-TTCTGTCTTA
18176531 TTTTT
1 TTTTT
18176536 CAAGTAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.15, C:0.13, G:0.08, T:0.64
Consensus pattern (24 bp):
TTTTTTTAAAAGCTTTCTGTCTTA
Found at i:18177015 original size:25 final size:25
Alignment explanation
Indices: 18176957--18177005 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
18176947 GCTGTTTTTT
*
18176957 TTTCATTTTTGCCCTTTTTTTTTCC
1 TTTCAGTTTTGCCCTTTTTTTTTCC
18176982 TTTCAGTTTTG-CCTTTTTCTTTTC
1 TTTCAGTTTTGCCCTTTTT-TTTTC
18177006 TATTTAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.04, C:0.22, G:0.06, T:0.67
Consensus pattern (25 bp):
TTTCAGTTTTGCCCTTTTTTTTTCC
Found at i:18177251 original size:15 final size:16
Alignment explanation
Indices: 18177219--18177263 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
18177209 CAATTCAATC
18177219 TTTATTTTGTATTATT
1 TTTATTTTGTATTATT
*
18177235 TTTATTTT-TATTTTTT
1 TTTATTTTGTA-TTATT
*
18177251 TTTCTTTTGTATT
1 TTTATTTTGTATT
18177264 TTATGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (16 bp):
TTTATTTTGTATTATT
Found at i:18177305 original size:4 final size:4
Alignment explanation
Indices: 18177298--18177324 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
18177288 TATGTATGTC
18177298 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
18177325 TGTTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:18177376 original size:14 final size:14
Alignment explanation
Indices: 18177346--18177393 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
18177336 ACATGTATTT
18177346 TATTTATATAGTTATA
1 TATTTAT-TA-TTATA
18177362 TATTTATTATTATA
1 TATTTATTATTATA
18177376 T-TATTATTATTAT-
1 TAT-TTATTATTATA
18177389 TATTT
1 TATTT
18177394 TGCAATGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 2 0.07
16 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
TATTTATTATTATA
Found at i:18178336 original size:13 final size:13
Alignment explanation
Indices: 18178320--18178349 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
18178310 TTTTTTTAGA
*
18178320 ATTTTTTTTATTT
1 ATTTGTTTTATTT
18178333 ATTTGTTTTATTT
1 ATTTGTTTTATTT
18178346 ATTT
1 ATTT
18178350 ATTTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (13 bp):
ATTTGTTTTATTT
Found at i:18178341 original size:17 final size:17
Alignment explanation
Indices: 18178320--18178361 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
18178310 TTTTTTTAGA
*
18178320 ATTTTTTTTATTTATTT
1 ATTTTATTTATTTATTT
*
18178337 GTTTTATTTATTTATTT
1 ATTTTATTTATTTATTT
18178354 ATTTTATT
1 ATTTTATT
18178362 AGATTAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (17 bp):
ATTTTATTTATTTATTT
Found at i:18178405 original size:17 final size:16
Alignment explanation
Indices: 18178383--18178447 Score: 57
Period size: 17 Copynumber: 4.2 Consensus size: 16
18178373 ATTTATTAAA
18178383 TTTTATCTTTATCTTAT
1 TTTTATCTTTAT-TTAT
* *
18178400 TTTTATTTTTGTTT-T
1 TTTTATCTTTATTTAT
*
18178415 ACTTT-TCTTTA-TT-T
1 -TTTTATCTTTATTTAT
18178429 TTTTATCTTTATTTAT
1 TTTTATCTTTATTTAT
18178445 TTT
1 TTT
18178448 CACTTTTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
13 3 0.08
14 9 0.24
15 7 0.18
16 9 0.24
17 10 0.26
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTATCTTTATTTAT
Found at i:18178432 original size:18 final size:18
Alignment explanation
Indices: 18178396--18178447 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
18178386 TATCTTTATC
* *
18178396 TTATTTTTATTT-TTGTT
1 TTATCTTTATTTATTTTT
*
18178413 TTA-CTTTTCTTTATTTTT
1 TTATC-TTTATTTATTTTT
18178431 TTATCTTTATTTATTTT
1 TTATCTTTATTTATTTT
18178448 CACTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 9 0.32
18 18 0.64
19 1 0.04
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (18 bp):
TTATCTTTATTTATTTTT
Found at i:18178467 original size:22 final size:22
Alignment explanation
Indices: 18178429--18178470 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
18178419 TTCTTTATTT
18178429 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
*
18178451 TTTTAT-TTTGTTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
18178471 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:18178554 original size:58 final size:58
Alignment explanation
Indices: 18178485--18178763 Score: 328
Period size: 58 Copynumber: 4.7 Consensus size: 58
18178475 AATAAAAATC
* **
18178485 AAAAAATATTTTTTAGGAAAAGTTGGAAGTATCAATTTTCCTTAAAAATAAATTTTTT
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAA
*
18178543 GAAAAATA-TTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAAATATTTTTTA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-----AA
* * ** *
18178606 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTT-TAA
* * *
18178667 AAAAAATATTTTTAAGGAAAAGTTGGAAGTATCAATTTTCCTTAAAAATAAATTTTCA
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAA
* *
18178725 AAAAAGTA-TTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTTAGG-AAAAGTTGAAAGTATCAATTTT
18178764 TCCTACACAA
Statistics
Matches: 189, Mismatches: 21, Indels: 22
0.81 0.09 0.09
Matches are distributed among these distances:
57 12 0.06
58 76 0.40
59 3 0.02
60 3 0.02
61 46 0.24
63 38 0.20
64 8 0.04
65 3 0.02
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAA
Found at i:18182297 original size:8 final size:8
Alignment explanation
Indices: 18182283--18182314 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
18182273 AATTTTGAAA
18182283 AAAAAAAG
1 AAAAAAAG
*
18182291 GAAAAAAG
1 AAAAAAAG
18182299 AAAAAAAG
1 AAAAAAAG
18182307 AAAAAAAG
1 AAAAAAAG
18182315 CACCACAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:18182304 original size:15 final size:14
Alignment explanation
Indices: 18182280--18182313 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
18182270 GGTAATTTTG
*
18182280 AAAAAAAAAAGGAA
1 AAAAAAAAAAAGAA
18182294 AAAAGAAAAAAAGAA
1 AAAA-AAAAAAAGAA
18182309 AAAAA
1 AAAAA
18182314 GCACCACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:18182740 original size:15 final size:14
Alignment explanation
Indices: 18182704--18182755 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
18182694 AAAAACGAGC
*
18182704 AAAAAAAAAGATGATA
1 AAAAAAAAAGA--AGA
18182720 AAAAAAAAAGAAAAGA
1 AAAAAAAAAG--AAGA
18182736 GAAAAAAAAAGAAGA
1 -AAAAAAAAAGAAGA
18182751 AAAAA
1 AAAAA
18182756 TGAGAAAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
14 5 0.16
15 4 0.12
16 12 0.38
17 10 0.31
18 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAGAAGA
Found at i:18182742 original size:20 final size:21
Alignment explanation
Indices: 18182719--18182773 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 21
18182709 AAAAGATGAT
18182719 AAAAAAAAA-AGAAAAGA-GA
1 AAAAAAAAAAAGAAAAGATGA
* *
18182738 AAAAAAAAGAAGAAAAAATGA
1 AAAAAAAAAAAGAAAAGATGA
*
18182759 GAAAATGAAAAAAGA
1 -AAAA-AAAAAAAGA
18182774 GATTCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 8 0.29
20 7 0.25
21 2 0.07
22 4 0.14
23 7 0.25
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAAAGAAAAGATGA
Found at i:18182773 original size:23 final size:23
Alignment explanation
Indices: 18182719--18182773 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
18182709 AAAAGATGAT
18182719 AAAAAAA-AAAGAAAAGAGAAAA
1 AAAAAAAGAAAGAAAAGAGAAAA
*
18182741 AAAAAGAAGAAA-AAATGAGAAAA
1 AAAAA-AAGAAAGAAAAGAGAAAA
*
18182764 TGAAAAAAGA
1 -AAAAAAAGA
18182774 GATTCAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 5 0.18
23 16 0.57
24 7 0.25
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (23 bp):
AAAAAAAGAAAGAAAAGAGAAAA
Found at i:18184059 original size:41 final size:41
Alignment explanation
Indices: 18184013--18184348 Score: 485
Period size: 41 Copynumber: 8.1 Consensus size: 41
18184003 ATGATTGTCA
*
18184013 AGGAGCAATTTACTTTCCAAAATCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
18184054 AGGAGCAATTTATTTTCCAAAATCGTGGTGCCTATGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
18184095 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* **
18184136 AGGAGTAATTTACTTTCCAAAGTCCCGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
18184177 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCCCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* **
18184218 AGGAGCAATTTACTTTTCAAAGTCCCGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
18184259 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
18184300 AGGAGCAATTTA-TGCTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACT--TTC-CAAAGTCGTGGTGCCTCTGTTTAG
18184343 AGGAGC
1 AGGAGC
18184349 TTTGGCAAAA
Statistics
Matches: 266, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
40 1 0.00
41 235 0.88
42 3 0.01
43 27 0.10
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:18184382 original size:10 final size:10
Alignment explanation
Indices: 18184369--18184415 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
18184359 AATAAAAAAT
18184369 AAAAAAACAC
1 AAAAAAACAC
*
18184379 AAAAAAAACAT
1 -AAAAAAACAC
*
18184390 AAAAAAAGAC
1 AAAAAAACAC
*
18184400 AAAAAAAAAC
1 AAAAAAACAC
18184410 AAAAAA
1 AAAAAA
18184416 TGACAATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.85, C:0.11, G:0.02, T:0.02
Consensus pattern (10 bp):
AAAAAAACAC
Found at i:18184385 original size:11 final size:10
Alignment explanation
Indices: 18184354--18184415 Score: 70
Period size: 11 Copynumber: 5.7 Consensus size: 10
18184344 GGAGCTTTGG
18184354 CAAAAAATAAA
1 CAAAAAA-AAA
*
18184365 AAATAAAAAAA
1 CAA-AAAAAAA
18184376 CACAAAAAAAA
1 CA-AAAAAAAA
18184387 CATAAAAAAAGA
1 CA-AAAAAAA-A
18184399 CAAAAAAAAA
1 CAAAAAAAAA
18184409 CAAAAAA
1 CAAAAAA
18184416 TGACAATGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
10 8 0.18
11 29 0.64
12 8 0.18
ACGTcount: A:0.84, C:0.10, G:0.02, T:0.05
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:18184413 original size:20 final size:20
Alignment explanation
Indices: 18184362--18184421 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 20
18184352 GGCAAAAAAT
*
18184362 AAAAAATAAAAAAACACAAA
1 AAAAAATAAAAAAAGACAAA
18184382 AAAAACATAAAAAAAGACAAA
1 AAAAA-ATAAAAAAAGACAAA
* *
18184403 AAAAAACAAAAAATGACAA
1 AAAAAATAAAAAAAGACAA
18184422 TGTTGAGTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 17 0.47
21 19 0.53
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.05
Consensus pattern (20 bp):
AAAAAATAAAAAAAGACAAA
Found at i:18184421 original size:10 final size:10
Alignment explanation
Indices: 18184369--18184421 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
18184359 AATAAAAAAT
*
18184369 AAAAAAACAC
1 AAAAAAAGAC
18184379 AAAAAAA-AC
1 AAAAAAAGAC
18184388 ATAAAAAAAGAC
1 --AAAAAAAGAC
*
18184400 AAAAAAAAAC
1 AAAAAAAGAC
*
18184410 AAAAAATGAC
1 AAAAAAAGAC
18184420 AA
1 AA
18184422 TGTTGAGTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 2 0.05
10 26 0.70
11 7 0.19
12 2 0.05
ACGTcount: A:0.81, C:0.11, G:0.04, T:0.04
Consensus pattern (10 bp):
AAAAAAAGAC
Found at i:18184604 original size:16 final size:16
Alignment explanation
Indices: 18184570--18184647 Score: 56
Period size: 16 Copynumber: 4.9 Consensus size: 16
18184560 CAATTCAATC
18184570 TTTATTTTGTATTA-TT
1 TTTATTTT-TATTATTT
18184586 TTTATTTTTATTATTT
1 TTTATTTTTATTATTT
*
18184602 TTT-TCTTTT-GTATTT
1 TTTAT-TTTTATTATTT
*
18184617 TATGTA-TTTTATTAATT
1 T-T-TATTTTTATTATTT
* *
18184634 ATTATTATTATTAT
1 TTTATTTTTATTAT
18184648 ATGTATGTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
15 14 0.29
16 30 0.61
17 5 0.10
ACGTcount: A:0.22, C:0.01, G:0.04, T:0.73
Consensus pattern (16 bp):
TTTATTTTTATTATTT
Found at i:18184615 original size:18 final size:16
Alignment explanation
Indices: 18184570--18184603 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
18184560 CAATTCAATC
18184570 TTTATTTTGTATTATT
1 TTTATTTTGTATTATT
18184586 TTTATTTT-TATTATT
1 TTTATTTTGTATTATT
18184601 TTT
1 TTT
18184604 TTCTTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTATTTTGTATTATT
Found at i:18184674 original size:12 final size:13
Alignment explanation
Indices: 18184586--18184684 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 13
18184576 TTGTATTATT
18184586 TTTATTTT-TATTA
1 TTTATTTTAT-TTA
*
18184599 TTT-TTTTCTTT-
1 TTTATTTTATTTA
* *
18184610 TGTATTTTATGTA
1 TTTATTTTATTTA
* *
18184623 TTT-TATTAATTA
1 TTTATTTTATTTA
18184635 -TTATTATTATTATA
1 TTTATT-TTATT-TA
* * *
18184649 TGTA-TGTCTTTA
1 TTTATTTTATTTA
18184661 TTTA-TTTATTTA
1 TTTATTTTATTTA
18184673 TTTATTTTATTT
1 TTTATTTTATTT
18184685 TGTTAATATT
Statistics
Matches: 63, Mismatches: 15, Indels: 16
0.67 0.16 0.17
Matches are distributed among these distances:
11 4 0.06
12 34 0.54
13 20 0.32
14 3 0.05
15 2 0.03
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:18184683 original size:9 final size:9
Alignment explanation
Indices: 18184570--18184753 Score: 53
Period size: 9 Copynumber: 20.0 Consensus size: 9
18184560 CAATTCAATC
*
18184570 TTTATTTTG
1 TTTATTTTA
18184579 TATTATTTTTA
1 T-TTA-TTTTA
18184590 TTT-TTATTA
1 TTTATT-TTA
* *
18184599 TTTTTTTCTT
1 TTTATTT-TA
18184609 TTGTATTTTA
1 TT-TATTTTA
*
18184619 TGTATTTTA
1 TTTATTTTA
*
18184628 TTAATTATTA
1 TTTATT-TTA
18184638 -TTATTATTA
1 TTTATT-TTA
* *
18184647 TATGTA-TGTC
1 T-T-TATTTTA
18184657 TTTA-TTTA
1 TTTATTTTA
18184665 TTTA-TTTA
1 TTTATTTTA
18184673 TTTATTTTA
1 TTTATTTTA
*
18184682 TTT-TGTTA
1 TTTATTTTA
* *
18184690 -ATATTTACA
1 TTTATTT-TA
*
18184699 TGTATTTTA
1 TTTATTTTA
*
18184708 TTTA-TATA
1 TTTATTTTA
* *
18184716 GTTA-TATA
1 TTTATTTTA
18184724 TTTATTATTA
1 TTTATT-TTA
18184734 TATTATTATTA
1 T-TTATT-TTA
*
18184745 TTTTTTTTA
1 TTTATTTTA
18184754 CAATATTTTT
Statistics
Matches: 134, Mismatches: 24, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
7 1 0.01
8 37 0.28
9 44 0.33
10 29 0.22
11 21 0.16
12 2 0.01
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (9 bp):
TTTATTTTA
Found at i:18184739 original size:11 final size:12
Alignment explanation
Indices: 18184624--18184745 Score: 53
Period size: 12 Copynumber: 9.9 Consensus size: 12
18184614 TTTTATGTAT
18184624 TTTATTAATTAT-
1 TTTATT-ATTATA
18184636 TATTATTATTATA
1 T-TTATTATTATA
* *
18184649 TGTATGTCTT-TA
1 TTTAT-TATTATA
18184661 TTTATTTATT-TA
1 TTTA-TTATTATA
18184673 TTTATT-TTAT-
1 TTTATTATTATA
*
18184683 TTTGTTA--ATA
1 TTTATTATTATA
*
18184693 TTTACATGTATTTTA
1 TTT--AT-TATTATA
18184708 TTTATATAGTTATATA
1 TTTAT-TA--T-TATA
18184724 TTTATTATTATA
1 TTTATTATTATA
18184736 -TTATTATTAT
1 TTTATTATTAT
18184746 TTTTTTTACA
Statistics
Matches: 86, Mismatches: 9, Indels: 31
0.68 0.07 0.25
Matches are distributed among these distances:
9 2 0.02
10 10 0.12
11 13 0.15
12 28 0.33
13 17 0.20
15 8 0.09
16 8 0.09
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (12 bp):
TTTATTATTATA
Found at i:18184837 original size:16 final size:16
Alignment explanation
Indices: 18184816--18184860 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
18184806 TTTTATTCAT
18184816 TTATCTGATTTTTTTA
1 TTATCTGATTTTTTTA
*
18184832 TTATCTGATTATTATTA
1 TTATCTGATT-TTTTTA
18184849 TTAT-T-ATTTTTT
1 TTATCTGATTTTTT
18184861 CTTTTTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 3 0.12
15 3 0.12
16 11 0.42
17 9 0.35
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (16 bp):
TTATCTGATTTTTTTA
Found at i:18184851 original size:17 final size:16
Alignment explanation
Indices: 18184806--18184852 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
18184796 TTAATTTTAT
18184806 TTTTATTCATTTATCTGA
1 TTTTATT-A-TTATCTGA
*
18184824 TTTTTTTATTATCTGA
1 TTTTATTATTATCTGA
18184840 TTATTATTATTAT
1 TT-TTATTATTAT
18184853 TATTTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 10 0.38
17 10 0.38
18 6 0.23
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.66
Consensus pattern (16 bp):
TTTTATTATTATCTGA
Done.