Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 136 of 138
Found at i:19663507 original size:28 final size:28
Alignment explanation
Indices: 19663454--19663508 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
19663444 TTTAGAAAAA
* **
19663454 TAAAATAAATAAAAATGGAAATGGAAAT
1 TAAAATAAAAAAAAAAAGAAATGGAAAT
19663482 TAAAATGAAAAAAAAAAAGAAA-GGAAA
1 TAAAAT-AAAAAAAAAAAGAAATGGAAA
19663509 ACCTGTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (28 bp):
TAAAATAAAAAAAAAAAGAAATGGAAAT
Found at i:19663898 original size:21 final size:22
Alignment explanation
Indices: 19663869--19663912 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
19663859 TCATCCTAAA
*
19663869 CCCAGAAAAACCCAATTTTTTT
1 CCCAGAAAAACCCAATTTCTTT
19663891 CCCA-AAAAACCCAATTTCTTT
1 CCCAGAAAAACCCAATTTCTTT
19663912 C
1 C
19663913 AAATTTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (22 bp):
CCCAGAAAAACCCAATTTCTTT
Found at i:19664382 original size:3 final size:3
Alignment explanation
Indices: 19664374--19664410 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
19664364 AAATTAAACC
19664374 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
19664411 CAACAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:19679135 original size:3 final size:3
Alignment explanation
Indices: 19679129--19679228 Score: 182
Period size: 3 Copynumber: 33.3 Consensus size: 3
19679119 TGCTTAATTG
19679129 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
19679177 TAA TAA TGA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
19679225 TAA T
1 TAA T
19679229 TTTATTTATT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 93 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:19680645 original size:45 final size:45
Alignment explanation
Indices: 19680552--19680789 Score: 253
Period size: 45 Copynumber: 5.3 Consensus size: 45
19680542 CATCTTTTGT
* ** * * * *
19680552 CGATGGTGGTCGAGGCAAGAGCCCGCACTAAGGG-CCGGCTTGTAC
1 CGATGGTGCTCGAGGCAACCGCCCGCAC-CAGGGCCCAGCGTGTGC
* * *
19680597 CGATAGTGCTCGAGGCAACCGCCCGTACCGGGGCCCAGCGTGTGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * *
19680642 CGATGGTGTTCGAGGCAACCGCCCGCATCGGGGCCCAGTGTGTGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * *
19680687 CGATGGTGATCGAGGCAACCACCCACACTAGGGCCCAGCGTGTGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * *
19680732 CGATGGTGCTAGAGGCAACCGCCCGCACCAGGACCCAGTGTGTGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGC
* *
19680777 TGATGGTGATCGA
1 CGATGGTGCTCGA
19680790 CCAGCGTGTG
Statistics
Matches: 160, Mismatches: 32, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
44 3 0.02
45 157 0.98
ACGTcount: A:0.18, C:0.31, G:0.35, T:0.16
Consensus pattern (45 bp):
CGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGC
Found at i:19680798 original size:24 final size:24
Alignment explanation
Indices: 19680766--19680813 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
19680756 GCACCAGGAC
* *
19680766 CCAGTGTGTGCTGATGGTGATCGA
1 CCAGCGTGTGCCGATGGTGATCGA
*
19680790 CCAGCGTGTGCCGATGGTGTTCGA
1 CCAGCGTGTGCCGATGGTGATCGA
19680814 GGCAACCGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.21, G:0.38, T:0.27
Consensus pattern (24 bp):
CCAGCGTGTGCCGATGGTGATCGA
Found at i:19680832 original size:69 final size:69
Alignment explanation
Indices: 19680721--19680858 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 69
19680711 ACACTAGGGC
* *
19680721 CCAGCGTGTGCCGATGGTGCTAGAGGCAACCGCCCGCACCAGGACCCAGTGTGTGCTGATGGTGA
1 CCAGCGTGTGCCGATGGTGCTAGAGGCAACCGCCCCCACCAGGACCCAGTGTGTGCCGATGGTGA
19680786 TCGA
66 TCGA
* * * *
19680790 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGC
1 CCAGCGTGTGCCGATGGTGCTAGAGGCAACCGCCCCCACCAGGACCCAGTGTGTGCCGATGGTGA
19680855 TCGA
66 TCGA
19680859 GGCAACTGCC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.17
Consensus pattern (69 bp):
CCAGCGTGTGCCGATGGTGCTAGAGGCAACCGCCCCCACCAGGACCCAGTGTGTGCCGATGGTGA
TCGA
Found at i:19680859 original size:45 final size:45
Alignment explanation
Indices: 19680790--19681029 Score: 247
Period size: 45 Copynumber: 5.4 Consensus size: 45
19680780 TGGTGATCGA
* *
19680790 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGC
1 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
* * **
19680835 CCAGTGTGTGCCGATGGTGCTCGAGGCAACTGCCCGTACCAAGGC
1 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
* * * * ** *
19680880 CCAGCGTGTGTCGATGGTGATCGAGGAAACCACCCGTACCAGGGC
1 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
* * *
19680925 CCAACGTGTGCCGATGGTGCTCGAGGTAACCG-GCCCACCAAGG-
1 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
* ** *
19680968 CCA-TGTGTGCCGATGGTGCTCGAGGCAATAG-CCCCAAC-AGGC
1 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
**
19681010 CCAGCGTGTATCGATGGTGC
1 CCAGCGTGTGCCGATGGTGC
19681030 AACGAGCAAA
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
41 3 0.02
42 32 0.20
43 16 0.10
44 7 0.04
45 104 0.64
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (45 bp):
CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCCCACCAAGGC
Found at i:19680861 original size:204 final size:201
Alignment explanation
Indices: 19680596--19680990 Score: 531
Period size: 204 Copynumber: 2.0 Consensus size: 201
19680586 CCGGCTTGTA
** * *
19680596 CCGATAGTGCTCGAGGCAACCGCCCGTACCGGGGCCCAGCGTGTGCCGATGGTGTTCGAGGCAAC
1 CCGATAGTGCTCGAGGCAACCGCCCCCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAAC
* ** * * * *
19680661 CGCCCGCATCGGGGCCCAGTGTGTGCCGATGGTGATCGAGGCAACCACCCACACTAGGGCCCAGC
66 CGCCCGCACCAAGGCCCAGCGTGTGCCGATGGTGATCGAGGAAACCACCCACACCAGGGCCCAAC
*
19680726 GTGTGCCGATGGTGCTAGAGGCAACCGCCCGCACC-AGGACCCAGTGTGTGCTGATGGTGATCGA
131 GTGTGCCGATGGTGCTAGAGGCAACCGCCC-CACCAAGG--CCA-TGTGTGCCGATGGTGATCGA
19680790 CCAGCGTGTG
192 CCAGCGTGTG
* * *
19680800 CCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGCTCGAGGCAAC
1 CCGATAGTGCTCGAGGCAACCGCCCCCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAAC
* * * **
19680865 TGCCCGTACCAAGGCCCAGCGTGTGTCGATGGTGATCGAGGAAACCACCCGTACCAGGGCCCAAC
66 CGCCCGCACCAAGGCCCAGCGTGTGCCGATGGTGATCGAGGAAACCACCCACACCAGGGCCCAAC
* * * *
19680930 GTGTGCCGATGGTGCTCGAGGTAACCGGCCCACCAAGGCCATGTGTGCCGATGGTGCTCGA
131 GTGTGCCGATGGTGCTAGAGGCAACCGCCCCACCAAGGCCATGTGTGCCGATGGTGATCGA
19680991 GGCAATAGCC
Statistics
Matches: 166, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
201 18 0.11
202 3 0.02
203 4 0.02
204 141 0.85
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (201 bp):
CCGATAGTGCTCGAGGCAACCGCCCCCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAAC
CGCCCGCACCAAGGCCCAGCGTGTGCCGATGGTGATCGAGGAAACCACCCACACCAGGGCCCAAC
GTGTGCCGATGGTGCTAGAGGCAACCGCCCCACCAAGGCCATGTGTGCCGATGGTGATCGACCAG
CGTGTG
Found at i:19680883 original size:114 final size:114
Alignment explanation
Indices: 19680676--19680903 Score: 334
Period size: 114 Copynumber: 2.0 Consensus size: 114
19680666 GCATCGGGGC
* *
19680676 CCAGTGTGTGCCGATGGTGATCGAGGCAACCACCCACACTAGGGCCCAGCGTGTGCCGATGGTGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCGTGTGCCGATGGTGC
*
19680741 TAGAGGCAACCGCCCGCACCAGGACCCAGTGTGTG-CTGATGGTGATCGA
66 TAGAGGCAACCGCCCGCACCAGGACCCAGCGTGTGTC-GATGGTGATCGA
* * * *
19680790 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCGTGTGCCGATGGTGC
* * *
19680855 TCGAGGCAACTGCCCGTACCAAGG-CCCAGCGTGTGTCGATGGTGATCGA
66 TAGAGGCAACCGCCCGCACC-AGGACCCAGCGTGTGTCGATGGTGATCGA
19680904 GGAAACCACC
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
114 98 0.96
115 4 0.04
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (114 bp):
CCAGCGTGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCGTGTGCCGATGGTGC
TAGAGGCAACCGCCCGCACCAGGACCCAGCGTGTGTCGATGGTGATCGA
Found at i:19680921 original size:159 final size:159
Alignment explanation
Indices: 19680631--19680948 Score: 447
Period size: 159 Copynumber: 2.0 Consensus size: 159
19680621 GTACCGGGGC
* * *
19680631 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCGCATCGGGGCCCAGTGTGTGCCGATGGTGA
1 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGA
* * * * *
19680696 TCGAGGCAACCACCCACACTAGGGCCCAGCGTGTGCCGATGGTGCTAGAGGCAACCGCCCGCACC
66 TCGAGGCAACCACCCACACCAAGGCCCAGCGTGTGCCGATGGTGATAGAGGAAACCACCCGCACC
** *
19680761 AGGACCCAGTGTGTGCTGATGGTGATCGA
131 AGGACCCAACGTGTGCCGATGGTGATCGA
*
19680790 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGC
1 CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGA
** ** * * *
19680855 TCGAGGCAACTGCCCGTACCAAGGCCCAGCGTGTGTCGATGGTGATCGAGGAAACCACCCGTACC
66 TCGAGGCAACCACCCACACCAAGGCCCAGCGTGTGCCGATGGTGATAGAGGAAACCACCCGCACC
* *
19680920 AGGGCCCAACGTGTGCCGATGGTGCTCGA
131 AGGACCCAACGTGTGCCGATGGTGATCGA
19680949 GGTAACCGGC
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
159 138 1.00
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.16
Consensus pattern (159 bp):
CCAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCCCACCAGGGCCCAGTGTGTGCCGATGGTGA
TCGAGGCAACCACCCACACCAAGGCCCAGCGTGTGCCGATGGTGATAGAGGAAACCACCCGCACC
AGGACCCAACGTGTGCCGATGGTGATCGA
Found at i:19681369 original size:40 final size:43
Alignment explanation
Indices: 19681272--19681467 Score: 147
Period size: 41 Copynumber: 4.7 Consensus size: 43
19681262 CACACATGCC
* * * * * *
19681272 CCAGTGTGTGCCAAT-GTGCT-GAGACAACGCCCATACTAGGC
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCACACAAGGG
* ** *
19681313 CCAGCATGTG-GGATGGTGCTCG-GGC-A-CCTCACACAAGGG
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCACACAAGGG
* *
19681352 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCGCACCAGGG
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCACACAAGGG
* * * * *
19681395 CCAGCGTGTGCCGATGGTTGATCGAGACAACCACC-C-CAAGGC
1 CCAGCGTGTGCCAATGG-TGCTCGAGGCAACCCCCACACAAGGG
* * *
19681437 CCAACGTGTGCCGATGGTGGTCGAGGCAACC
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACC
19681468 GCCTGCACTA
Statistics
Matches: 123, Mismatches: 25, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
39 17 0.14
40 13 0.11
41 30 0.24
42 22 0.18
43 27 0.22
44 14 0.11
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.15
Consensus pattern (43 bp):
CCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCACACAAGGG
Found at i:19681450 original size:42 final size:41
Alignment explanation
Indices: 19681346--19681501 Score: 152
Period size: 42 Copynumber: 3.6 Consensus size: 41
19681336 GCACCTCACA
* *
19681346 CAAGGGCCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCG
1 CAAGGGCCAGCGTGTGCCGATGGTGATCGAGGCAACCCCCG
*
19681387 CACCAGGGCCAGCGTGTGCCGATGGTTGATCGAGACAACCACCC-
1 CA--AGGGCCAGCGTGTGCCGATGG-TGATCGAGGCAACC-CCCG
* * * *
19681431 CAAGGCCCAACGTGTGCCGATGGTGGTCGAGGCAACCGCCTG
1 CAAGGGCCAGCGTGTGCCGATGGTGATCGAGGCAACC-CCCG
* *
19681473 CACTAGGGCGCAACGTGTGTCGATGGTGA
1 CA--AGGGC-CAGCGTGTGCCGATGGTGA
19681502 GGACCCAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 16 0.17
42 21 0.22
43 20 0.21
44 18 0.19
45 20 0.21
ACGTcount: A:0.21, C:0.31, G:0.34, T:0.15
Consensus pattern (41 bp):
CAAGGGCCAGCGTGTGCCGATGGTGATCGAGGCAACCCCCG
Found at i:19681497 original size:45 final size:41
Alignment explanation
Indices: 19681348--19681501 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 41
19681338 ACCTCACACA
* * *
19681348 AGGGCCAGCGTGTGCCAATGGTGCTCGAGGCAACCCCCGCACC
1 AGGGCCAACGTGTGCCGATGGTGATCGAGGCAA-CCCCGCA-C
* * *
19681391 AGGGCCAGCGTGTGCCGATGGTTGATCGAGACAACCACCCCA-
1 AGGGCCAACGTGTGCCGATGG-TGATCGAGGCAACC-CCGCAC
* *
19681433 AGGCCCAACGTGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
1 AGGGCCAACGTGTGCCGATGGTGATCGAGGCAACC-CC-GCAC
*
19681476 TAGGGCGCAACGTGTGTCGATGGTGA
1 -AGGGC-CAACGTGTGCCGATGGTGA
19681502 GGACCCAGCT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 14 0.15
42 21 0.23
43 22 0.24
44 18 0.20
45 17 0.18
ACGTcount: A:0.20, C:0.31, G:0.34, T:0.15
Consensus pattern (41 bp):
AGGGCCAACGTGTGCCGATGGTGATCGAGGCAACCCCGCAC
Found at i:19681575 original size:45 final size:46
Alignment explanation
Indices: 19681526--19681641 Score: 112
Period size: 48 Copynumber: 2.5 Consensus size: 46
19681516 CAATGTGTGT
19681526 TCGAGGCAACCGCCCAACACTAGGC-CCAGCGTGTGCCGATGGTGA
1 TCGAGGCAACCGCCCAACACTAGGCGCCAGCGTGTGCCGATGGTGA
* * * * * *
19681571 TCGAGGAAATCGCTCCATA-ACCAGGGCGCTAGCGTTTGCCGATGGTGC
1 TCGAGGCAACCGC-CCA-ACACTA-GGCGCCAGCGTGTGCCGATGGTGA
* *
19681619 TTGAGGCAACCGCCC-GCACTAGG
1 TCGAGGCAACCGCCCAACACTAGG
19681642 GGTGTGTGGC
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
45 13 0.24
46 9 0.16
47 6 0.11
48 27 0.49
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (46 bp):
TCGAGGCAACCGCCCAACACTAGGCGCCAGCGTGTGCCGATGGTGA
Found at i:19681790 original size:46 final size:46
Alignment explanation
Indices: 19681683--19681809 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 46
19681673 AGCCCGTCTA
* *
19681683 CACC-GGGCCCAGCATGGTGCCGATGGTGATCGAGGTAAACCGCCCG
1 CACCAGGGCCCAGCGT-GTGCCGATGGTGCTCGAGGTAAACCGCCCG
* *
19681729 CACCAGGGCCCAGCGTTGTGCTGATGGTGCTCGAGG-AAATCGCCCG
1 CACCAGGGCCCAGCG-TGTGCCGATGGTGCTCGAGGTAAACCGCCCG
* * *
19681775 CATCAGGGCCTAGCGTATGCCGATGGTGCTCGAGG
1 CACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGG
19681810 CAACATCACC
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
45 18 0.25
46 26 0.37
47 26 0.37
48 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.35, T:0.17
Consensus pattern (46 bp):
CACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGTAAACCGCCCG
Found at i:19682807 original size:173 final size:173
Alignment explanation
Indices: 19682623--19682937 Score: 463
Period size: 173 Copynumber: 1.8 Consensus size: 173
19682613 CTAAGATCGA
* *
19682623 ACCGACAGCGGGATCGACAGCAGCACGCAGAGGGGA-CTGGGTCGATCCCCGGCTTGCGCGTTAT
1 ACCGACAGCGGGATCGACAGCAGCACGCAGAGGGGATC-GGGCCGATCCCCGGCTTGCGCATTAT
* * **
19682687 GCTCCTCCGGTCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGACGGAGTTCA
65 GCCCCTCCGATCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGAAAGAGTTCA
19682752 TT-CCATGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCTAG
130 TTCCCA-GTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCTAG
* *
19682796 ACCGGCAGCGGGATCGACAGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATG
1 ACCGACAGCGGGATCGACAGCAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATG
* * * * * * *
19682861 CCCCTCTGATCGGTTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGGATAAAGAGTTCAT
66 CCCCTCCGATCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGAAAGAGTTCAT
19682926 TCCCAGTCTAAG
131 TCCCAGTCTAAG
19682938 ATCAGACCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
173 121 0.97
174 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (173 bp):
ACCGACAGCGGGATCGACAGCAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATG
CCCCTCCGATCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAGAAAGAGTTCAT
TCCCAGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCTAG
Found at i:19683074 original size:147 final size:147
Alignment explanation
Indices: 19682794--19683076 Score: 408
Period size: 147 Copynumber: 1.9 Consensus size: 147
19682784 TGTGGCAGCT
* *
19682794 AGACCGGCAGCGGGATCGACAGCAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTA
1 AGACCGACAGCGGGATCGACAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
* * * * * *
19682859 TGCCCCTCTGATCGGTTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGGATAAAGAGTTC
66 TGCCCCTCTGATCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAAAGAGTGC
19682924 ATTCCCAGTCTAAGATC
131 ATTCCCAGTCTAAGATC
* * * *
19682941 AGACCGACAGTGGTATCGACAGCAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTA
1 AGACCGACAGCGGGATCGACAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
* *
19683006 TGCCCCT-TCGGTCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCAT-ACGTAGT
66 TGCCCCTCT-GATCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAAAG-AGT
19683069 GCATTCCC
129 GCATTCCC
19683077 GATCTTGATA
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
146 3 0.03
147 117 0.98
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (147 bp):
AGACCGACAGCGGGATCGACAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
TGCCCCTCTGATCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAAAGAGTGC
ATTCCCAGTCTAAGATC
Found at i:19690148 original size:26 final size:26
Alignment explanation
Indices: 19690112--19690164 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19690102 GTTGACCTAG
19690112 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
19690138 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
19690164 G
1 G
19690165 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:19691039 original size:16 final size:16
Alignment explanation
Indices: 19691018--19691048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19691008 ATTCCCAGTC
*
19691018 TAAGCATACGGAGTTA
1 TAAGCATACAGAGTTA
19691034 TAAGCATACAGAGTT
1 TAAGCATACAGAGTT
19691049 CATTGCCAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.26
Consensus pattern (16 bp):
TAAGCATACAGAGTTA
Found at i:19691219 original size:17 final size:17
Alignment explanation
Indices: 19691197--19691232 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19691187 AGGCATATGG
19691197 AGTTCATTCCCAGTCTA
1 AGTTCATTCCCAGTCTA
* *
19691214 AGTTCATTTCTAGTCTA
1 AGTTCATTCCCAGTCTA
19691231 AG
1 AG
19691233 ATCGGACCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (17 bp):
AGTTCATTCCCAGTCTA
Found at i:19693271 original size:153 final size:155
Alignment explanation
Indices: 19692940--19693309 Score: 435
Period size: 153 Copynumber: 2.4 Consensus size: 155
19692930 GCATAGTGCC
* *
19692940 CGCCCGC-CAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
1 CGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
* * **
19693004 ACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGAGAGACCAACCGATCCCCGGCT
65 ACCAGACCGAGGG-TGT-G-AGCAGGATCAACAGCACGCAGAGAGAGACCAACCGATCCCCGGCT
* *
19693069 TGCGTATCCTGCCCCTCTAGCCGACTAAG
127 TGCGCATCCTACCCCTCTAGCCGACTAAG
* ** * *
19693098 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGTTATACGGAGTTCATTCCCATTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * * *
19693163 CCAGACCGA-GG-GT-AGCAGGATCAACAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGT
66 CCAGACCGAGGGTGTGAGCAGGATCAACAGCACGCAGAGAGAGA-CCAACCGATCCCCGGCTTGC
*
19693225 GCATCCTACCCCTCTGGCC-AGCTAAG
130 GCATCCTACCCCTCTAGCCGA-CTAAG
* * *
19693251 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
19693310 CATACAGAGT
Statistics
Matches: 182, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
152 24 0.13
153 90 0.49
155 2 0.01
157 2 0.01
158 63 0.35
159 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (155 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCAGACCGAGGGTGTGAGCAGGATCAACAGCACGCAGAGAGAGACCAACCGATCCCCGGCTTGCG
CATCCTACCCCTCTAGCCGACTAAG
Found at i:19693333 original size:26 final size:26
Alignment explanation
Indices: 19693283--19693335 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19693273 GTTGACTTAG
* *
19693283 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAATCTAA
19693309 GCATACAGAGTTCA-TTCCTAATCTAA
1 GCATACAGAGTTCATTTCC-AATCTAA
19693335 G
1 G
19693336 ATCGAAGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAATCTAA
Found at i:19694216 original size:26 final size:26
Alignment explanation
Indices: 19694180--19694230 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19694170 TGACTTAGTT
19694180 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
19694206 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19694231 ATAGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19697230 original size:179 final size:179
Alignment explanation
Indices: 19696901--19697310 Score: 504
Period size: 179 Copynumber: 2.3 Consensus size: 179
19696891 GTTGGCTTAG
** * * *
19696901 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT---G-ACCAGGATCGACA
* * **
19696966 ACACGCAGAGGGAACCGGCCGATCCTCGGCTTGCACATCCTGCCCCTCTGGCTGGCTGAGCGCCC
62 ACACGCAGAGGGAACCGGCCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCC
*
19697031 GCACGCTCGTTTCATGGGTTGACTTAGTTAGAC-AGAGTTCATTCCCAGTCTAA
127 GCACGCTCGTTTCATGGGTTGACTTAGGTAGACGA-AGTTCATTCCCAGTCTAA
* *
19697084 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGG-T-ACCAGGATCGACAGCAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGACCAGGATCGACAACAC
* * * ** * *
19697147 GTAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCTGTCCCTCTGGCCAGCTGAGCGCCTGC
66 GCAGA--GGGAACCGGCCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCCGC
* * *
19697212 ACGCTTGTTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAA
129 ACGCTCGTTTCATGGGTTGACTTAGGTAGACGAAGTTCATTCCCAGTCTAA
* *
19697263 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTG
19697311 TGGCAGCACA
Statistics
Matches: 196, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
177 18 0.09
178 1 0.01
179 133 0.68
180 2 0.01
182 1 0.01
183 41 0.21
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (179 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGACCAGGATCGACAACAC
GCAGAGGGAACCGGCCGATCCCCAGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGTAGACGAAGTTCATTCCCAGTCTAA
Found at i:19697275 original size:26 final size:26
Alignment explanation
Indices: 19697239--19697289 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19697229 TGACTTAGGT
19697239 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
19697265 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19697290 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19698168 original size:26 final size:26
Alignment explanation
Indices: 19698138--19698188 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19698128 TGACTTAGTT
*
19698138 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
19698164 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19698189 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19698299 original size:179 final size:182
Alignment explanation
Indices: 19697978--19698341 Score: 475
Period size: 179 Copynumber: 2.0 Consensus size: 182
19697968 TTGGCTTAGA
* * * *
19697978 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGTAGGATCGGCAG
1 CATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGG-T--GATAGCAGGATCGGCAA
* * * *
19698043 CACGCAGAAGGAGACCCGATCGATCCCCTACTTACGCATCATGCCCCTCTGGTCGGCTGAGCACC
63 CACGCAGAAGGAGACCCAATCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGACTGAGCACC
** *
19698108 CACACACTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAG
128 CACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
*
19698163 CATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGA-TCGA-GG-G-TAGCAGGATCGGCAACA
1 CATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACT-GAGGGTGATAGCAGGATCGGCAACA
* * * * * * *
19698224 CGCAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAGCACCCG
65 CGCAGAAGGAGACCCAATCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGACTGAGCACCCA
* *
19698289 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
130 CACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
19698342 ATCAGATCTG
Statistics
Matches: 157, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
179 117 0.75
180 1 0.01
184 3 0.02
185 36 0.23
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (182 bp):
CATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTGATAGCAGGATCGGCAACAC
GCAGAAGGAGACCCAATCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGACTGAGCACCCAC
ACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
Found at i:19698385 original size:153 final size:153
Alignment explanation
Indices: 19698162--19698494 Score: 463
Period size: 153 Copynumber: 2.2 Consensus size: 153
19698152 CCCAGTCTAA
*
19698162 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTAGCAGGATCGGCAACACGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTAGCAGGATCGACAACACGC
* *
19698227 AGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAGCACCCGCAC
66 AGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCAC
*
19698292 GCTCGTTTCGTGGGTTGACTTAG
131 ACTCGTTTCGTGGGTTGACTTAG
* * *
19698315 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCTGA-CTGAGGGTAGCAGGATCGACAACACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTAGCAGGATCGACAACAC-
* * * * ** * *
19698379 TC-GAGGGTGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGT
64 GCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGC
*
19698443 ACACTCGTTTCGTGGTTTGACTTAG
129 ACACTCGTTTCGTGGGTTGACTTAG
** *
19698468 TTATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
19698495 CATACGGAGT
Statistics
Matches: 159, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
152 1 0.01
153 157 0.99
154 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (153 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTAGCAGGATCGACAACACGC
AGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCGCAC
ACTCGTTTCGTGGGTTGACTTAG
Found at i:19698506 original size:26 final size:26
Alignment explanation
Indices: 19698470--19698520 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19698460 TGACTTAGTT
19698470 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
19698496 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19698521 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19698570 original size:332 final size:335
Alignment explanation
Indices: 19697909--19698671 Score: 964
Period size: 332 Copynumber: 2.3 Consensus size: 335
19697899 TGATCTACGC
* * * * * * *
19697909 GCTTGCACATCCCG-CCTCTCTGGCCGACGTAGTGCACGCCTGCCCGCTGGTTTCGTCGATTGGC
1 GCTTGCACATCCTGCCCT-TCTGGCCGAC-T-GAGCAC-CC-GCACGCTCGTTTCGTGGGTTGAC
* * *
19697973 TTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGTAGGATC
61 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG-T--GATAGCAGGATC
* * * * *
19698038 GGCAGCACGCAGAAGGAGACCCGATCGATCCCCTACTTACGCATCATGCCCCTCTGGTCGGCTGA
123 GACAACACGCAGAAGGAGACCCGACCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGGCTGA
19698103 GCACCCACACACTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATAC
188 GCACCCACACACTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
19698168 GAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTAGCAGGATCGGCAACACGCAGAGGG
253 GAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTAGCAGGATCGACAACACGCAGAGGG
19698233 GGACCCAATCGATCCCCG
318 GGACCCAATCGATCCCCG
*
19698251 GCTTGCGCATCCTGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCACATCCTGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
19698316 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCTGACTGA-GG-G-TAGCAGGATCGACAACAC
66 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGATAGCAGGATCGACAACAC
* * * * ** * * * *
19698378 ATC-GAGGGTGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCG
131 -GCAGAAGGAGACCCGACCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGGCTGAGCACCCA
* * * *
19698442 TACACTCGTTTCGTGGTTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
195 CACACTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
* * * * * *
19698507 ATTCCTAGTCTAAGATCAGACCGGACCTAGGGTAGCAGGATCGACAGCATGCAGAGGGGGACCCG
260 ATTCCCAGTCTAAGATCAAACCGGACCGAGGGTAGCAGGATCGACAACACGCAGAGGGGGACCCA
*
19698572 ATCGATCCCTG
325 ATCGATCCCCG
* * * ** * *
19698583 GCTTGCCCATCCTGCCCTTTTGGTCGGTTGAG--CGCGCACACTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCACATCCTGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
19698646 CATACGAAGTTCATTCCCAGTCTAAG
66 CATACGAAGTTCATTCCCAGTCTAAG
19698672 CATACGGAGT
Statistics
Matches: 371, Mismatches: 48, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
330 55 0.15
332 219 0.59
333 2 0.01
337 2 0.01
338 60 0.16
339 2 0.01
340 5 0.01
341 1 0.00
342 22 0.06
343 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Consensus pattern (335 bp):
GCTTGCACATCCTGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGATAGCAGGATCGACAACAC
GCAGAAGGAGACCCGACCGATCCCCGACTTACGCATCATGCCCCTCTGGCCGGCTGAGCACCCAC
ACACTCGTTTCATGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCAAACCGGACCGAGGGTAGCAGGATCGACAACACGCAGAGGGGGACCCAA
TCGATCCCCG
Found at i:19698682 original size:26 final size:26
Alignment explanation
Indices: 19698645--19698697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19698635 GTTGACTTAG
19698645 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
19698671 GCATACGGAGTTCCTTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19698697 G
1 G
19698698 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19698696 original size:177 final size:177
Alignment explanation
Indices: 19698315--19698716 Score: 540
Period size: 179 Copynumber: 2.3 Consensus size: 177
19698305 GTTGACTTAG
* * * *
19698315 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCTGA-CTGAGGGTAGCAGGATCGACAACACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCT-AGGGTAGCAGGATCGACAACACA
* ** *
19698379 TCGAGGGTGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGTA
65 -CGAGGGGGACCCGACCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGTTGAGCG-CCGCA
* ** *
19698444 CACTCGTTTCGTGGTTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAA
128 CACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
19698494 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCTAGGGTAGCAGGATCGACAGCATGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCTAGGGTAGCAGGATCGACAACA--C
* * * * *
19698559 A-GAGGGGGACCCGATCGATCCCTGGCTTGCCCATCCTGCCCTTTTGGTCGGTTGAGCG-CGCAC
64 ACGAGGGGGACCCGACCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGTTGAGCGCCGCAC
19698622 ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
129 ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
19698671 GCATACGGAGTTCCTTCCTAGTCTAAGATCGGACTGGACCAAGGGT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCTAGGGT
19698717 TGCTGCAGCA
Statistics
Matches: 198, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
177 91 0.46
179 103 0.52
180 2 0.01
181 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (177 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCTAGGGTAGCAGGATCGACAACACAC
GAGGGGGACCCGACCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGCCGGTTGAGCGCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:19699575 original size:26 final size:26
Alignment explanation
Indices: 19699545--19699595 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19699535 TGACTTAGTT
*
19699545 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCACAGTCTAAGC
19699571 ATACGGAGTTCATTCACAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
19699596 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGC
Found at i:19699790 original size:153 final size:153
Alignment explanation
Indices: 19699569--19699901 Score: 409
Period size: 153 Copynumber: 2.2 Consensus size: 153
19699559 CCCAGTCTAA
* * * * * *
19699569 GCATACGGAGTTCATTCACAGTCTAAGATCGGATCGGATCGAGGGTAGCAGGATCGGTATCACGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCAGGATCGGTAGCACAC
** *
19699634 AGAGGGGGACCCAG-TGGATCCCCGGCTTGCGCATCCTACCCCTCTAGCCGACTGAGCGCCCGCA
66 AGAGGGGGA-CCAGACCGATCCCCGACTTGCGCATCCTACCCCTCTAGCCGACTGAGCGCCCGCA
*
19699698 -CGCTCGTTTCATGGGTTAACTTAG
130 TAG-TCGTTTCATGGGTTAACTTAG
*
19699722 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTAGCAGGATCGGTAGCACAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCAGGATCGGTAGCACAC
* * * * * * * * *
19699787 AGAGGGTGACCTGACCGATCTCCGACTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGTAT
66 AGAGGGGGACCAGACCGATCCCCGACTTGCGCATCCTACCCCTCTAGCCGACTGAGCGCCCGCAT
* *
19699852 AGTCGTTTCATGGTTTGACTTAG
131 AGTCGTTTCATGGGTTAACTTAG
** *
19699875 TTATACAGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
19699902 CAGATGGAAT
Statistics
Matches: 152, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
152 3 0.02
153 148 0.97
154 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTAGCAGGATCGGTAGCACAC
AGAGGGGGACCAGACCGATCCCCGACTTGCGCATCCTACCCCTCTAGCCGACTGAGCGCCCGCAT
AGTCGTTTCATGGGTTAACTTAG
Found at i:19700039 original size:179 final size:177
Alignment explanation
Indices: 19699722--19700288 Score: 670
Period size: 179 Copynumber: 3.2 Consensus size: 177
19699712 GTTAACTTAG
* * * *
19699722 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTAGCAGGATCGGTAGCACAC
1 GCATATGGAATTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTAGCAGGATCGGTAGCACAC
* * ** *
19699787 AGAGGGTGACCTGACCGAT-CTCCGACTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGTA
65 AGAGGGGGACCCGACCGATCCT-CGACTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
*
19699851 TAGTCGTTTCATGGTTTGACTTAGTTATACAGAGTTCATTCCCAGTCTAA
129 TAGTCGTTTCATGGGTTGACTTAGTTATAC-GAGTTCATTCCCAGTCTAA
* * * * * *
19699901 GCAGATGGAATTCATTCCTAGTCTAAGATCAGATTGAACCTAGGGTAGTAGGATCGGTAGCACGC
1 GCATATGGAATTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTAGCAGGATCGGTAGCACAC
** * * * *
19699966 AGAGGGGGACCCGGTCGATCCTCGGCTTGCCCATCCTGCCCCTCTAGCCGGCTGAGCGCTCGTAC
65 AGAGGGGGACCCGACCGATCCTCGACTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTAT
* *
19700031 ACTCGTTTCATGGGTTGACTTAGTTATACGAAGTTCATTCCCAGCCTAA
130 AGTCGTTTCATGGGTTGACTTAGTTATACG-AGTTCATTCCCAGTCTAA
* * * * *
19700080 GCATAT-GAAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTAGCAAGATCAGCAGCACT
1 GCATATGGAA-TTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTAGCAGGATCGGTAGCACA
* * * * * *
19700144 CAAAGGGGGACCCGACCGATCCCCGACTTGCTCATCCTGCCACTCTGGCCGGTTGAGCACCCGTA
64 CAGAGGGGGACCCGACCGATCCTCGACTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
* * ** *
19700209 TGGTCGTTTTATGGGTTGACTTAGGAATACGGAGTTAATTCCCAGTCTAA
129 TAGTCGTTTCATGGGTTGACTTAGTTATAC-GAGTTCATTCCCAGTCTAA
* *
19700259 GCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCATATGGAATTCATTCCCAGTCTAAGATC
19700289 GGACCAGATC
Statistics
Matches: 326, Mismatches: 56, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
178 5 0.02
179 316 0.97
180 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (177 bp):
GCATATGGAATTCATTCCCAGTCTAAGATCAGACGAACCGAGGGTAGCAGGATCGGTAGCACACA
GAGGGGGACCCGACCGATCCTCGACTTGCCCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTATA
GTCGTTTCATGGGTTGACTTAGTTATACGAGTTCATTCCCAGTCTAA
Found at i:19700275 original size:26 final size:26
Alignment explanation
Indices: 19700235--19700285 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19700225 TGACTTAGGA
19700235 ATACGGAGTTAATTCCCAGTCTAAGC
1 ATACGGAGTTAATTCCCAGTCTAAGC
*
19700261 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTAATTCCCAGTCTAAG
19700286 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAGTCTAAGC
Found at i:19700736 original size:26 final size:26
Alignment explanation
Indices: 19700707--19700783 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
19700697 TAACTTAGTT
*
19700707 ATACGGAGTTTATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
19700733 ATACAGAGTTCATTCCCAGTCCAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
19700759 ATATGAAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19700784 ATCAGACCGG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19700947 original size:26 final size:26
Alignment explanation
Indices: 19700910--19700988 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
19700900 GTTGACTTAG
*
19700910 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19700936 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19700962 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19700988 G
1 G
19700989 ATTGGACTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19700966 original size:205 final size:205
Alignment explanation
Indices: 19700608--19700990 Score: 550
Period size: 205 Copynumber: 1.9 Consensus size: 205
19700598 GAAGGTTGAT
* *** * * * *
19700608 GCAGCACGTAGAGGGAGACCCGGTTGATCCTCGGCTTGCGCATCCTACCCCTCTGGTTGGTTGAG
1 GCAGCACGCAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTACCCCTCTGGCTGGCTGAG
* ** * *
19700673 CACCCGCACGCTCGTTTCGTGGGTTAACTTAGTTATACGGAGTTTATTCCCAGTCTAAGCATACA
66 CACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
*
19700738 GAGTTCATTCCCAGTCCAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCTAAGGT
131 GAGTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCTAAGGT
19700803 AGCAGGATCG
196 AGCAGGATCG
* * * *
19700813 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCTCTTTGGCTGGCTGAG
1 GCAGCACGCAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTACCCCTCTGGCTGGCTGAG
* * **
19700878 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATG
66 CACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
* *
19700943 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
131 GAGTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGAT
19700991 TGGACTGGAC
Statistics
Matches: 154, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
205 154 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (205 bp):
GCAGCACGCAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCTACCCCTCTGGCTGGCTGAG
CACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACA
GAGTTCATTCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCTAAGGT
AGCAGGATCG
Found at i:19703048 original size:153 final size:153
Alignment explanation
Indices: 19702714--19703076 Score: 372
Period size: 153 Copynumber: 2.3 Consensus size: 153
19702704 CTCGCCCACC
* * * * *
19702714 CGCTCGTTTCATTG-GTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC-GAATCAGAC
1 CGCTCATTTCA-TGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC
*
19702777 TGAGGGTTGCAGTAGAAGGATTGACAGCACGTAGAGGGAGACTCGACCATTCCCCGACTTGCGCA
64 TGA--G--G--GTAGAAGGATTGACAGCACGTAGAGGGAGACCCGACCATTCCCCGACTTGCGCA
* * * *
19702842 TCCTGCCCCTCTGGTCGGCTAAGCGCCTGTA
123 TCCTGCCCCTCTAGCCGGCTAAGCACCTGCA
* ** * ** * *
19702873 CGCTCGTTTTGTGGGTTGACTTAGTTATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTG
1 CGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * *
19702938 AGGGTAGCAGGTTTGACAGCACGTAGAGGGGGACCCGACCGA-TCCTCGGCTTGCGCATCCTGCC
66 AGGGTAGAAGGATTGACAGCACGTAGAGGGAGACCCGACC-ATTCCCCGACTTGCGCATCCTGCC
* * *
19703002 CTTCTAGCCGGTTGAGCACCTGCA
130 CCTCTAGCCGGCTAAGCACCTGCA
* *
19703026 CGTTCATTTCATGAGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAG
1 CGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
19703077 CATACGGAGT
Statistics
Matches: 170, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
153 111 0.65
154 1 0.01
155 1 0.01
157 1 0.01
158 2 0.01
159 53 0.31
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (153 bp):
CGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
AGGGTAGAAGGATTGACAGCACGTAGAGGGAGACCCGACCATTCCCCGACTTGCGCATCCTGCCC
CTCTAGCCGGCTAAGCACCTGCA
Found at i:19705880 original size:26 final size:26
Alignment explanation
Indices: 19705844--19705894 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19705834 TGACTTAGTT
19705844 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19705870 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19705895 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19706058 original size:26 final size:26
Alignment explanation
Indices: 19706021--19706073 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19706011 GTTGACTTAG
19706021 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19706047 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
19706073 G
1 G
19706074 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19706092 original size:179 final size:180
Alignment explanation
Indices: 19705684--19706092 Score: 505
Period size: 179 Copynumber: 2.2 Consensus size: 180
19705674 TTGGCTTAGA
* * * *
19705684 CATACAGAGTTCATTCCTAGTCAAAGATCAAACCGGACTGAGGGTTGCGACAGCAAGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T----CAGCAAGATCGACAG
* * * * * **
19705749 CACACAGAGAGAGACCCGATCGATCCTCGGCTTACGCATCTTGCCCCTTTAGCCGGCTGAGTGCC
61 CACACAGAGAGAGACCCGACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCCGGCTGAGCACC
* ** *
19705814 CGCACGCTCGTTTCGTGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAG
126 CGCACGCTCGCTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * * ** *
19705869 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGT-AGCAAGATCGGTAGCACGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCAGCAAGATCGACAGCACAC
* * ** * * *
19705933 AGAGGGGGACCCGACCGATCCCCGGCTTGGGCCTCCTACCCCTCTGGCTGGCTGAGCACCCGCAC
66 AGAGAGAGACCCGACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCCGGCTGAGCACCCGCAC
19705998 GCTCGCTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
131 GCTCGCTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
*
19706048 CATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
19706093 TGTGACAGCA
Statistics
Matches: 192, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
179 154 0.80
184 1 0.01
185 37 0.19
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (180 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTCAGCAAGATCGACAGCACAC
AGAGAGAGACCCGACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCCGGCTGAGCACCCGCAC
GCTCGCTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
Found at i:19706542 original size:26 final size:26
Alignment explanation
Indices: 19706513--19706589 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
19706503 TGACTTAGTT
* *
19706513 ATACAGAGTTTATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19706539 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
19706565 ATATGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19706590 ATCAGACCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19707774 original size:179 final size:182
Alignment explanation
Indices: 19707425--19707786 Score: 455
Period size: 179 Copynumber: 2.0 Consensus size: 182
19707415 GTTGGCTTGG
* *
19707425 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGTAAGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGG-TGT-G-AGTAAGATCGGTA
*
19707490 GCACACAGAGGGAGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTCTGACCGGCTGAGCAC
63 GCACACAGAGGGAGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTCTGACCGGCTCAGCAC
** * ** *
19707555 CCGCATGCCTGTTTCGTTGGTTGACTTAGTTATGCGGAGTTCATTCCCAGTCTTA
128 CCGCACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTA
* * *
19707610 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACG-AGG-GT-AGTAGGATCGGTTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTGTGAGTAAGATCGGTAGCA
* * * * * * * *
19707672 CGCTGAGGGGGACCCG-GCTGATCC-CTGGCTTGCGCATCCTGCCCCTCTGGCCGGTTCAGCGCC
66 CACAGAGGGAGACCCGATC-GATCCTC-GGCTTACGCATCCTGCCCCTCTGACCGGCTCAGCACC
*
19707735 CGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
129 CGCACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
19707787 AAGATAGGAC
Statistics
Matches: 154, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
178 2 0.01
179 108 0.70
182 2 0.01
184 3 0.02
185 39 0.25
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTGTGAGTAAGATCGGTAGCA
CACAGAGGGAGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTCTGACCGGCTCAGCACCCG
CACACCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTA
Found at i:19709241 original size:26 final size:26
Alignment explanation
Indices: 19709205--19709255 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19709195 TGACTTAGTT
19709205 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
19709231 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19709256 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19710264 original size:179 final size:179
Alignment explanation
Indices: 19709990--19710333 Score: 490
Period size: 179 Copynumber: 1.9 Consensus size: 179
19709980 CGAGGGTTGC
* * * * * *
19709990 GGTAGTAGGATCGGTAGCACGTAGAGAGAGACCCGATCGATCCTCGGCTTGCGCATCCTGTCCCT
1 GGTAGTAGGATCAGCAGCACATAGAGAGAGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCT
* * * * ** * *
19710055 CTGGTCGGCTGAGCGCCTGCACGTTCGTTTCGTGGGTTGACTTAGTTATATGGAGTTCATTCCCA
66 CTGGTCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
* *
19710120 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAG
131 ATCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGGACCAAACTGAG
* * *
19710169 GGTAGTAGGATCAGCAGCACATGGAGAGGGTCCCGATCGATCCCCGGCTTGCACATCCTGCCCCT
1 GGTAGTAGGATCAGCAGCACATAGAGAGAGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCT
* *
19710234 CTGGTCGGTTGAGGGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
66 CTGGTCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
*
19710299 ATCTAAGCATACGGAGTTCATTCGCAGTATAAGAT
131 ATCTAAGCATACGGAGTTCATTCCCAGTATAAGAT
19710334 CAGACCGGAC
Statistics
Matches: 143, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
179 143 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (179 bp):
GGTAGTAGGATCAGCAGCACATAGAGAGAGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCT
CTGGTCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA
ATCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGGACCAAACTGAG
Found at i:19710331 original size:26 final size:26
Alignment explanation
Indices: 19710279--19710331 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19710269 GTTGACTTAG
*
19710279 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATATAA
* * *
19710305 GCATACGGAGTTCATTCGCAGTATAA
1 GCATACGAAGTTCATTCCCAATATAA
19710331 G
1 G
19710332 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATATAA
Found at i:19711207 original size:26 final size:26
Alignment explanation
Indices: 19711177--19711227 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19711167 TGACTTAGTT
*
19711177 ATACGGACTTCATTCCCAGTCTAAGC
1 ATACGGACTTCATTCCCAGCCTAAGC
*
19711203 ATACGGAGTTCATTCCCAGCCTAAG
1 ATACGGACTTCATTCCCAGCCTAAG
19711228 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGACTTCATTCCCAGCCTAAGC
Found at i:19711331 original size:179 final size:179
Alignment explanation
Indices: 19711080--19711425 Score: 548
Period size: 179 Copynumber: 1.9 Consensus size: 179
19711070 CAAGATCGAC
*
19711080 AGCACATAGAGGGAGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
1 AGCACATAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
* **
19711145 CCCGCACGCTTGTTTCATGGGTTGACTTAGTTATACGGACTTCATTCCCAGTCTAAGCATACGGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATACGGA
* *
19711210 GTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTAGCAGGATCAGT
131 GTTAATTCCCAGCCTAAGATCAGACCGGACCCAGGGTAGCAGGATCAGT
* * * * *
19711259 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCT
1 AGCACATAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
19711324 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATACGGA
* * *
19711389 GTTAATTCCCAGTCTAAGATCGGATCGGACCCAGGGT
131 GTTAATTCCCAGCCTAAGATCAGACCGGACCCAGGGT
19711426 TGCGACAGCA
Statistics
Matches: 151, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
179 151 1.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.22
Consensus pattern (179 bp):
AGCACATAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATACGGA
GTTAATTCCCAGCCTAAGATCAGACCGGACCCAGGGTAGCAGGATCAGT
Found at i:19711387 original size:26 final size:26
Alignment explanation
Indices: 19711357--19711406 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
19711347 GACTTAGGCA
*
19711357 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTAATTCCCAGTCTAAGCG
19711383 TACGGAGTTAATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
19711407 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCG
Found at i:19712235 original size:26 final size:26
Alignment explanation
Indices: 19712199--19712275 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
19712189 TGACTTAGTT
19712199 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* * **
19712225 ATACAGAGTTCATTCCCAATCTATTC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19712251 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19712276 ATCGGACCAG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19712438 original size:26 final size:26
Alignment explanation
Indices: 19712402--19712454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19712392 GTTGACTTAG
*
19712402 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19712428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19712454 G
1 G
19712455 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19713298 original size:26 final size:26
Alignment explanation
Indices: 19713269--19713337 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
19713259 TTATACAAAC
* *
19713269 TTCATTCCCAGTCTAAGCATACGGAG
1 TTCATTCCCAATCTAAGCATACAGAG
**
19713295 TTCATTCCCAATCTATTCATACAGAG
1 TTCATTCCCAATCTAAGCATACAGAG
19713321 TTCATTCCCAATCTAAG
1 TTCATTCCCAATCTAAG
19713338 ATCAGACCAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.32
Consensus pattern (26 bp):
TTCATTCCCAATCTAAGCATACAGAG
Found at i:19713526 original size:179 final size:179
Alignment explanation
Indices: 19713285--19713702 Score: 536
Period size: 179 Copynumber: 2.3 Consensus size: 179
19713275 CCCAGTCTAA
* ** * *
19713285 GCATACGGAGTTCATTCCCAATCTATTCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGA-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** * * * *
19713349 CGGAGTGTAGCAAGATCGATAGCACGTAGA-GGGGGACCCGGCTGATCCCCGGCTTACACATCCT
66 CCAAG-GTAGCAAGATCGACAGCACGCA-ACGGGGGACCCGACCGATCCCCGGCTTACACATCCT
* * * *
19713413 ACCCTTCTGGCCGACTGA-CTGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
129 ACCCCTCTAGCCGACTGAGC-GCCCGCACGCTCGTTTCGTAGGTTGACTTAG
** *
19713464 TTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* *** *
19713529 CCAAGGTAGCAGGATCGACAGCACGCAACGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGC
66 CCAAGGTAGCAAGATCGACAGCACGCAACGGGGGACCCGACCGATCCCCGGCTTACACATCCTAC
** * *
19713594 CCCTCTAGTTGGCTGAGCGCCCGCACGCTCGTTTTGTAGGTTGACTTAG
131 CCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
*
19713643 GCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
19713703 TGGATCGAGG
Statistics
Matches: 205, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
178 1 0.00
179 200 0.98
180 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (179 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CCAAGGTAGCAAGATCGACAGCACGCAACGGGGGACCCGACCGATCCCCGGCTTACACATCCTAC
CCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
Found at i:19713679 original size:26 final size:26
Alignment explanation
Indices: 19713643--19713695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19713633 GTTGACTTAG
*
19713643 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19713669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19713695 G
1 G
19713696 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19714581 original size:26 final size:26
Alignment explanation
Indices: 19714546--19714595 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19714536 GACTTAGTTA
*
19714546 TATGGAGTTCATTCCCAGTCTAAGCT
1 TATGCAGTTCATTCCCAGTCTAAGCT
*
19714572 TATGCAGTTCATTCCTAGTCTAAG
1 TATGCAGTTCATTCCCAGTCTAAG
19714596 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (26 bp):
TATGCAGTTCATTCCCAGTCTAAGCT
Found at i:19714702 original size:179 final size:181
Alignment explanation
Indices: 19714392--19714793 Score: 479
Period size: 179 Copynumber: 2.2 Consensus size: 181
19714382 AGGCAGATGG
* * * * *
19714392 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGAGTTATGGCAGCAAGATTGGCAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG-GGTA-GGCAG--AGATCGACAGCACGCAG
* ** *
19714457 AGGGAGACCTAGTCGATCCCTGGCTTATGCATCCTACCCCTCTGGCTGGCTGAGCGGCCACACGC
62 AGGGAGACCTAGTCGATCCCCGGCTTACACATCCTACCCCTATGGCTGGCTGAGCGGCCACACGC
* * ** ** * *
19714522 TCGTTTCGTGGGTTGACTTAGTTATATGGAGTTCATTCCCAGTCTAAGCTTATGC
127 TCATTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGC
* *
19714577 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTA-GCAG-GATCGACAGCACGCAGAGGG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGGCAGAGATCGACAGCACGCAGAGGG
* * * * *
19714640 GGACCCT-GTCGATCCCCGGCTTGCACATCCTGCCCCTATGGTTGGCTGAGC-GCCTGCACGCTC
66 AGA-CCTAGTCGATCCCCGGCTTACACATCCTACCCCTATGGCTGGCTGAGCGGCC-ACACGCTC
*
19714703 ATTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
129 ATTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGC
* *
19714756 AGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGT
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
19714794 TGCGGTAGCA
Statistics
Matches: 186, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
178 3 0.02
179 141 0.76
180 3 0.02
182 4 0.02
184 3 0.02
185 32 0.17
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (181 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGGCAGAGATCGACAGCACGCAGAGGG
AGACCTAGTCGATCCCCGGCTTACACATCCTACCCCTATGGCTGGCTGAGCGGCCACACGCTCAT
TTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGC
Found at i:19714758 original size:26 final size:26
Alignment explanation
Indices: 19714722--19714774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19714712 GTTGACATAG
*
19714722 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
19714748 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
19714774 G
1 G
19714775 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:19716465 original size:26 final size:26
Alignment explanation
Indices: 19716435--19716487 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19716425 GTTGACTTAG
19716435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19716461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19716487 G
1 G
19716488 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19716590 original size:185 final size:181
Alignment explanation
Indices: 19716363--19716874 Score: 645
Period size: 178 Copynumber: 2.8 Consensus size: 181
19716353 GGACCTGCCT
* *
19716363 GATCTTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
1 GATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
*
19716428 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
19716493 ACCGAATCGAGGGTTGCGGGAGTAGGATCGACAGCACACAAAGGGGGACCC-GATC
131 ACCGAATCGAGGGTTGC-GGA--A-GATCGACAGCACACAAAGGGGGACCCAG-TC
* * * *
19716548 GATCCTTGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGTAAGCTCGTTTCATGGGTT
1 GATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
* ** * *
19716613 AACTTAGTTATACGGAGTTCATTTCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * ** ** * *
19716678 AATGAA-CAAGGGTAGC--AAGATCGGTAGCACGTAGAGGGGGACCCAGTT
131 ACCGAATCGAGGGTTGCGGAAGATCGACAGCACACAAAGGGGGACCCAGTC
* * * * *
19716726 GATTCTCGGCTTGTGCATTCTGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTT
1 GATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
* * * **
19716791 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATGCGGAGTTCATTCCTAGTGTAAGATTGG
66 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
**
19716856 ACCGGGTCGAGGGTTGCGG
131 ACCGAATCGAGGGTTGCGG
19716875 CAGCACAAGC
Statistics
Matches: 276, Mismatches: 47, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
178 135 0.49
179 10 0.04
181 1 0.00
184 8 0.03
185 122 0.44
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (181 bp):
GATCCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGAATCGAGGGTTGCGGAAGATCGACAGCACACAAAGGGGGACCCAGTC
Found at i:19716670 original size:26 final size:26
Alignment explanation
Indices: 19716622--19716672 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
19716612 TAACTTAGTT
* * *
19716622 ATACGGAGTTCATTTCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
19716648 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
19716673 ATCAGAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:19716823 original size:178 final size:179
Alignment explanation
Indices: 19716284--19716841 Score: 663
Period size: 185 Copynumber: 3.1 Consensus size: 179
19716274 TGATTTAGTT
* * * ** * * * * *
19716284 ATACGGAGTTCATTCCTAGTATAAGATTGGACCGGACCAAGGGTAGCAGGATCGGCAACACGTAG
1 ATACGGAGTTCATTCCCAATCTAAGATCAGAACGAATCAAGGGTAGCAAGATCGGCAGCACGTAG
* ** *
19716349 AGGGGGACCTGCCTGA-TCTTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
66 AGGGGGACCCGATTGATTC-TCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACG
*
19716413 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
130 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
* * * * *
19716463 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGGAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAATCTAAGATCAGAACGAATCAAGGGTAGC---A--A-GATCGGCAGC
** * * * * * *
19716528 ACACAAAGGGGGACCCGATCGATCCTTGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCC
60 ACGTAGAGGGGGACCCGATTGATTCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * ** *
19716593 GTAAGCTCGTTTCATGGGTTAACTTAGTTATACGGAGTTCATTTCTAGTCTAAGC
125 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
* *
19716648 ATACGGAGTTCATTCCCAATCTAAGATCAGAATGAA-CAAGGGTAGCAAGATCGGTAGCACGTAG
1 ATACGGAGTTCATTCCCAATCTAAGATCAGAACGAATCAAGGGTAGCAAGATCGGCAGCACGTAG
* * *
19716712 AGGGGGACCC-AGTTGATTCTCGGCTTGTGCATTCTGCCCCTCTGGCTGGCTGAGCACCCGTACG
66 AGGGGGACCCGA-TTGATTCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACG
*
19716776 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
130 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
*
19716826 ATGCGGAGTTCATTCC
1 ATACGGAGTTCATTCC
19716842 TAGTGTAAGA
Statistics
Matches: 317, Mismatches: 54, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
177 1 0.00
178 124 0.39
179 40 0.13
181 1 0.00
182 1 0.00
184 8 0.03
185 141 0.44
186 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (179 bp):
ATACGGAGTTCATTCCCAATCTAAGATCAGAACGAATCAAGGGTAGCAAGATCGGCAGCACGTAG
AGGGGGACCCGATTGATTCTCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
Found at i:19717883 original size:26 final size:26
Alignment explanation
Indices: 19717847--19717899 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19717837 GTTGACTTAG
19717847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19717873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19717899 G
1 G
19717900 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19718742 original size:25 final size:26
Alignment explanation
Indices: 19718714--19718766 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
19718704 GGTTGACTTT
19718714 AGCATACGGAGTTCATT-ACAGTCTA
1 AGCATACGGAGTTCATTCACAGTCTA
*
19718739 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCACAGTCTA
19718765 AG
1 AG
19718767 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCACAGTCTA
Found at i:19719074 original size:868 final size:867
Alignment explanation
Indices: 19717829--19719485 Score: 2545
Period size: 867 Copynumber: 1.9 Consensus size: 867
19717819 GGCACGCTCA
*
19717829 TTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTTATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
19717894 TCTAAGATCAGACCGGACTGAGGGTTACGATAGCACATGCTGGGCTCGAGCATATGCTGGTGCCG
66 TCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCCA
* * * ***
19717959 TATTTTTTTTCACCCGGGGCACCATTACCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGG
131 CATTTTTTTTCACCCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACAGCATTGGG
19718024 TTACGACGATTGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
196 TTACGACGATTGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
19718089 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTG
261 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAGTTG
* * *
19718154 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATA
326 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATA
* *
19718219 GTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAA
391 GTCAAAAAATCTTGTAAACTTCGAGATTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATAAA
*
19718284 AGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCTAAAAAAATTATAAAAAATCCCGAACC
455 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTATAAAAAATCCCGAACC
* * *
19718349 ATAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTAACATGAA
520 ATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAACATGAA
* *
19718414 GGCTTAAGAGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGA
585 GGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCATGGCAGAAATATGA
* * * *
19718479 CA-ATGTGCATAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCAT-CTCGTCTCTCTGGC
650 -AGATGTGCATAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCT-GCCTCTCTGGC
* * **
19718542 CGGA-GTAGTGCCCGCTCGCCCGCTTGTTTTGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCA
713 C-GACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCA
19718606 ATCGAAGATCAGACCGGACCAAAGGTTGTGGTAGCAGGATCGGCAGCACGAAGAGGGAGATCGGT
777 ATCGAAGATCAGACCGGACCAAAGGTTGTGGTAGCAGGATCGGCAGCACGAAGAGGGAGATCGGT
19718671 AGCTGGATCGGTAGCACGCATGCTTG
842 AGCTGGATCGGTAGCACGCATGCTTG
*
19718697 TTTTGTGGGTTGACTTTA-GCATACGGAGTTCATT-ACAGTCTAAGCATACGGAGTTCATTCCCA
1 TTTTATGGGTTGAC-TTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
19718760 GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
65 GTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCC
* * * * *
19718825 ACATTTTTTTTCGCTCCGAGGCCCCGTCACCGGAGCATCGTCGGAGAACCTGACCGACAGCATTG
130 ACATTTTTTTTCAC-CCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACAGCATT-
* * * * *
19718890 GGGTTCCGATGATTGAGGGGGGTCGGG-GGGGTGTGTGCCCATGATGTGCGATGGGTGCTGGTAC
193 GGGTTACGACGATTG-GGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
19718954 TTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGTA
257 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCA
*
19719018 GTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
322 GTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* ** *
19719083 AATGGTCGCAAAATCTTGTAAACTTCGAGATTTTAGCTGAATTTTTTTTTGCATGCAAAAAAAAT
387 AATAGTCAAAAAATCTTGTAAACTTCGAGATTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAT
* * * * *
19719148 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCTAAAAAAATTTTAAAAAATCCCGA
452 AAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTATAAAAAATCCCGA
* * *
19719213 ACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACAT
517 ACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAACAT
* *
19719278 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAAGGGCATTGGCATGGCAGAAATA
582 GAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCATGGCAGAAATA
* * *
19719343 TGAAGATGTGCCTAAACCTAACTACCACCCTATCGATCCACGGCTTGCGTATCCTGCCTCTCTGG
647 TGAAGATGTGCATAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGG
* * *
19719408 TCGACGTAGTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
712 CCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCA
* *
19719473 GTCTAAGATCAGA
777 ATCGAAGATCAGA
19719486 TCAGACTGAG
Statistics
Matches: 710, Mismatches: 72, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
866 3 0.00
867 406 0.57
868 216 0.30
869 75 0.11
870 10 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (867 bp):
TTTTATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCCA
CATTTTTTTTCACCCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACAGCATTGGG
TTACGACGATTGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCAGTTG
AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATA
GTCAAAAAATCTTGTAAACTTCGAGATTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAATAAAA
GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTATAAAAAATCCCGAACCA
TAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTAACATGAAG
GCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCATGGCAGAAATATGAA
GATGTGCATAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGA
CGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAATCG
AAGATCAGACCGGACCAAAGGTTGTGGTAGCAGGATCGGCAGCACGAAGAGGGAGATCGGTAGCT
GGATCGGTAGCACGCATGCTTG
Found at i:19719650 original size:26 final size:26
Alignment explanation
Indices: 19719614--19719690 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
19719604 TGACTTAGTT
*
19719614 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
19719640 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19719666 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19719691 ATAGGACCGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19719853 original size:26 final size:26
Alignment explanation
Indices: 19719817--19719869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19719807 GTTGACTTAG
* *
19719817 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAATCTAA
*
19719843 GCATACGAAGTTTATTCACAATCTAA
1 GCATACGAAGTTCATTCACAATCTAA
19719869 G
1 G
19719870 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAATCTAA
Found at i:19720919 original size:26 final size:26
Alignment explanation
Indices: 19720883--19720935 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19720873 GTTGGCTTAG
* *
19720883 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19720909 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19720935 G
1 G
19720936 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19721970 original size:26 final size:26
Alignment explanation
Indices: 19721934--19721986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19721924 GTTGACTTAG
19721934 GCATACGAAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
* * *
19721960 GCATGCGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
19721986 G
1 G
19721987 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:19724107 original size:26 final size:26
Alignment explanation
Indices: 19724077--19724129 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19724067 GTTGACTTAG
19724077 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19724103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19724129 G
1 G
19724130 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19725022 original size:26 final size:26
Alignment explanation
Indices: 19724974--19725024 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19724964 TGACTTAGTT
*
19724974 ATACGGACTTCATTCCTAGTCTAAGC
1 ATACGGACTTCATTCCTAATCTAAGC
*
19725000 ATACGGAGTTCATTCAC-AATCTAAG
1 ATACGGACTTCATTC-CTAATCTAAG
19725025 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGACTTCATTCCTAATCTAAGC
Found at i:19725187 original size:26 final size:26
Alignment explanation
Indices: 19725151--19725203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19725141 GTTGACTTAG
*
19725151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19725177 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19725203 G
1 G
19725204 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19726112 original size:26 final size:26
Alignment explanation
Indices: 19726049--19726115 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
19726039 TGACTTAGTT
*
19726049 ATACGAAGTTCATTCCTAGTCTAAGC
1 ATACGAAGTTCATTCCTAGTATAAGC
19726075 ATAC-AGAGTTCATT-CTCAGTATAAGC
1 ATACGA-AGTTCATTCCT-AGTATAAGC
*
19726101 ATACGAATTTCATTC
1 ATACGAAGTTCATTC
19726116 ACAATTTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 3 0.09
26 31 0.89
27 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTATAAGC
Found at i:19726125 original size:26 final size:26
Alignment explanation
Indices: 19726070--19726125 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
19726060 ATTCCTAGTC
* *
19726070 TAAGCATACAGAGTTCATTCTCAGTA
1 TAAGCATACAGAGTTCATTCACAATA
* *
19726096 TAAGCATAC-GAATTTCATTCACAATT
1 TAAGCATACAG-AGTTCATTCACAATA
19726122 TAAG
1 TAAG
19726126 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCACAATA
Found at i:19726288 original size:26 final size:26
Alignment explanation
Indices: 19726252--19726304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19726242 GTTGACTTAG
*
19726252 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19726304 G
1 G
19726305 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19727325 original size:179 final size:179
Alignment explanation
Indices: 19726994--19727398 Score: 454
Period size: 179 Copynumber: 2.2 Consensus size: 179
19726984 CTTAGACATT
* * *
19726994 CGGAGTTCATTCCGAGTCTAACATCAGACCAGACCGAGGGTTGCGATAGCAGGATCAGTAGCACG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-A-AG--G-G-TAGCAGGATCAGTAGCACG
* * * *
19727059 CAGAGGGAGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTTACCGGCTGAGCAACCGCA
60 CAAAGGGAGACCCGATCGATCCCCAGCTTGCGCATCCTACCCCTCTGACCAGCTGAGCAACCGCA
* ** ** * * *
19727124 TGCTCATTTTGTGGGTTGACTTA-GTTATACGGAGTTCATTCCTAGTCTAAGCATA
125 CGCTCATTTCATGGAATGACTTAGGCT-TACGGAGTCCATTCCCAGTCTAAGCATA
* * *
19727179 CGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCAAGGGTAGCAGGATCGGTAGCATGCAAAAG
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTAGCAGGATCAGTAGCACGC-AAAG
* * * **
19727244 GG-GACCCGGTCGATCCTCAGCTTGCGCATCCTACCCCTCTGGCCAGCTGAGCGCCCGCACGCTC
65 GGAGACCCGATCGATCCCCAGCTTGCGCATCCTACCCCTCTGACCAGCTGAGCAACCGCACGCTC
* *
19727308 GTTTCATGTAATGACTTAGGCTTACGGAGTCCATTCCCAGTCTAAGCATA
130 ATTTCATGGAATGACTTAGGCTTACGGAGTCCATTCCCAGTCTAAGCATA
* * ** *
19727358 CGGAGTTCATTCTCAATCTAAGATTGGACCAGACCGAGGGT
1 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
19727399 TGTGATAGCA
Statistics
Matches: 187, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
179 144 0.77
180 8 0.04
181 1 0.01
183 1 0.01
184 1 0.01
185 32 0.17
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (179 bp):
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTAGCAGGATCAGTAGCACGCAAAGG
GAGACCCGATCGATCCCCAGCTTGCGCATCCTACCCCTCTGACCAGCTGAGCAACCGCACGCTCA
TTTCATGGAATGACTTAGGCTTACGGAGTCCATTCCCAGTCTAAGCATA
Found at i:19727368 original size:26 final size:26
Alignment explanation
Indices: 19727330--19727379 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
19727320 GACTTAGGCT
*
19727330 TACGGAGTCCATTCCCAGTCTAAGCA
1 TACGGAGTCCATTCCCAATCTAAGCA
* *
19727356 TACGGAGTTCATTCTCAATCTAAG
1 TACGGAGTCCATTCCCAATCTAAG
19727380 ATTGGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTCCATTCCCAATCTAAGCA
Found at i:19728241 original size:26 final size:26
Alignment explanation
Indices: 19728205--19728255 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19728195 TGACTTAGTT
19728205 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
19728231 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19728256 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19729286 original size:26 final size:25
Alignment explanation
Indices: 19729248--19729299 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
19729238 GTTGACTTAG
19729248 GCATACGGGTTCATTC-CTAGTCTAA
1 GCATACGGGTTCATTCAC-AGTCTAA
*
19729273 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGG-GTTCATTCACAGTCTAA
19729299 G
1 G
19729300 ATCAGACAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGGTTCATTCACAGTCTAA
Found at i:19730793 original size:901 final size:894
Alignment explanation
Indices: 19728379--19731985 Score: 4553
Period size: 901 Copynumber: 4.0 Consensus size: 894
19728369 TGCGTTGACT
* * * * * *
19728379 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCGGGGGTTATGCCAGCACATGC
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGAT--GAACGGACT-GAGGGTTACGGCAGCACATGC
* * * *
19728443 TGGGCT-TAGGCATGTGCTGGTGTCACA-TTTTTTTCACCTGGGGCACCATCGTCGGAG-A--A-
63 TGGGCTCGAGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCAC
* * * * *
19728502 C-----A--TGACCGGCGGCATTAAGGTTCTGACGATTGGGGGGGTCGGGGGGGTGTGGGGACAT
128 CGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGG-CCGGGGGGTGTGCGCACAT
* * *
19728560 GATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
192 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
19728625 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTC
257 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTC
*
19728690 TGAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
322 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
19728755 GTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCT
387 GTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
*
19728820 AAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
452 AAAAAAATTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
19728885 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
516 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAA
19728950 ATGGCAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
581 AT-GC-----CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *** * *
19729015 TCCACGGCTTGCGCATCCCGCCTCTTTGGTCGGCGTAGTGCCCGCCTACCCGCTCGTCTCGTCGG
640 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGG
* * * *
19729080 TTGGCTTAGGCATACGGAGCTT-ATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAAC
705 TTGGCATAGGCATACGAAG-TTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGC
* * ** ** * *
19729144 AAGATTGGCAATGTGCAGA-AGGGGACCCGATTGATCCTCGGCTTATGCATCCTGCCCCTCTGGC
769 AAGATCGAC-A-GCACAGAGAGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGC
* * * *
19729208 CGGTTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGG-GTTCATTCCTAGTC
832 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * *
19729270 TAAGCATATGGAGTTCATTCACAGTCTAAGATCAGACAGCACCGATGGTTACGGCAGCACATGCT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATGA-AC-GGACTGAGGGTTACGGCAGCACATGCT
* * * *
19729335 GGGCTTG-GGCATGTGCTGGTGCCGTATTTTTTTTCACCCAGGGCACCATCGTCGGAGCATCGCC
64 GGGCTCGAGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACC
* * * ** * *
19729399 AGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGGCCGAGGGGTGTGCGCACAAGA
129 GGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGA
*
19729464 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19729529 TCACTCCCCCTTAAAGATG-ATTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCT
259 TCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
* **
19729593 GGAATGGGGACACTTTTTTCAAATGGTTGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
323 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG
* * *
19729658 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGGGGCCAAAACTCCTTCTA
388 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-
* * **
19729723 AAAAAAATTTAAAAAATCCCGAGCCGTAAATGGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
19729788 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAA
* *
19729853 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGG
582 TGCCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
19729918 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTAATCAGTTG
647 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG--T--CCGCTCGTTTCATCGGTTG
* *
19729983 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGCAGCAAGA
708 GCATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAGA
* * * ** *
19730048 TCGGCAGCACACAGAGGGAGACCCGACCAATCCCCAACTTGCGCATCCTGCCCCTCTGGCCGGCT
773 TCGACAGCACAGAGAGGG-GACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCT
* *
19730113 GAGCGTCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* **
19730171 TAAGCATACAGAGTTCATTCCCAGTCAAAGATTGAATCGGACTGAGGGTTACGATAGCACATGCT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGA-TGAA-CGGACTGAGGGTTACGGCAGCACATGCT
* *
19730236 GGGCTCGA-GCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGTATCATC
64 GGGCTCGAGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACC
* * * *
19730300 GGAGAACCTGATCGGCGGTATTGAGGTTCCGATGATTGGAGGGGCCGGGGGGTGTGCGCACATGA
129 GGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
19730365 TGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAACCTCAAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
19730429 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAATAGCCATTAAAGTGTCTG
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
* * * *
19730494 ATATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* *
19730559 TTTTTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAA
389 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAA
* * * *
19730624 AAATATTTTACAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTC
454 AAA-AATTTA-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
19730689 GTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAA
* *
19730754 TGCCATTGGCACGGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
582 TGCCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
19730819 CTTGCGCATCCCGTCTCTGTGGCC-ACGTATTACCCGCCCGTCCGCTTGTTTCATCGGTTGGCAT
647 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCAT
* * * ** * *
19730883 AGGCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGA
712 AGGCATACGAAGTTCATTCCCAG-----TC-TA---AG---A-T--CAGACT-GGA-CCGA-GGG
* * * * * * ** *
19730948 TCTGAGGGTAGCAGGATCGATAGCCCATAGAGAGGGACCCGACCGATTTCTGGCTTACGCATCCT
759 T-TG-CGGCAGCAAGATCGACAGCACAGAGAG-GGGACCCGACCGATCCCCGGCTTACGCATCCT
* ** * *
19731013 GCCCTTCTGGCCGATTGAGTGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCA
821 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
19731078 TTCCCAGTC
886 TTCCCAGTC
*
19731087 TAAG-AT-C--AG---A----C---C---G--G-AC---C-GAGGGTTGCGGCAGCACATGCTGG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATGAACGGACTGAGGGTTACGGCAGCACATGCTGG
* * * * * * * * *
19731128 GCTC-AGGCATGTGCTGGTGCCATAATTGTTTTCGCCTGGGGTACCATTGCCAGAGCATCACCGA
66 GCTCGAGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGG
* * * *
19731192 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATT-GGGGCGCCGGAGGGAGTGCGCACATGATG
131 AGAACCTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
19731256 TGCGATGGGTTCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
19731321 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
* * *
19731386 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTT
326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* * * **
19731451 TGTGCATACCAAAGAAAATACAAGGATGACGTCTACCAAGTTTGTAGCCAAAACTCCTTCTAAAA
391 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAA
* *
19731516 AATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
456 AAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
19731581 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGCC
*
19731646 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTG
586 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19731711 CGCATCCTGCCTCTCTGG-CGACGTAATGCCCGCCCGTCCGTTCGTTTCATCGGTTGGCATAGGC
651 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCATAGGC
* * * * * *
19731775 ATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGTAAGATCGATAG
716 ATACGA-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAGATCGACAG
* * * * * *
19731839 CACAGAGAGGGAGACCCTATCGATCCCTGGCTTCCACATCCTGCCCCTCTGGCCGGCTTAGCGCC
780 CACAGAGAGGG-GACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * ** *
19731904 CGTACGCTCGTTTCATGGGTTGACCTAGTTATACGGAGTTCA-TACCAGTC
844 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * **
19731954 TAAGCATACAAAGTTGATTCATAGTCTAAGAT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGAT
19731986 CAGACCGGAA
Statistics
Matches: 2365, Mismatches: 274, Indels: 159
0.85 0.10 0.06
Matches are distributed among these distances:
867 13 0.01
868 103 0.04
869 3 0.00
870 2 0.00
871 4 0.00
872 1 0.00
873 4 0.00
874 1 0.00
875 1 0.00
876 1 0.00
879 2 0.00
881 1 0.00
882 2 0.00
883 2 0.00
884 1 0.00
887 1 0.00
888 250 0.11
889 78 0.03
890 299 0.13
891 71 0.03
892 28 0.01
893 1 0.00
894 1 0.00
895 1 0.00
896 141 0.06
898 5 0.00
899 14 0.01
900 360 0.15
901 421 0.18
902 373 0.16
903 41 0.02
905 3 0.00
908 1 0.00
909 2 0.00
911 4 0.00
912 4 0.00
913 2 0.00
914 3 0.00
915 4 0.00
916 114 0.05
917 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (894 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATGAACGGACTGAGGGTTACGGCAGCACATGCTGG
GCTCGAGGCATGTGCTGGTGCCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGG
AGAACCTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAA
AAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGCC
ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCATAGGC
ATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAGATCGACAGC
ACAGAGAGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:19730916 original size:26 final size:26
Alignment explanation
Indices: 19730886--19730936 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
19730876 TTGGCATAGG
19730886 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
19730912 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
19730937 GATCAAACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:19732991 original size:26 final size:26
Alignment explanation
Indices: 19732955--19733005 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19732945 TGACTTAGTT
*
19732955 ATACGGAGTTCATTCATAGTCTAAGC
1 ATACGGAGTTCATTCACAGTCTAAGC
*
19732981 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
19733006 ATAAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGC
Found at i:19740131 original size:25 final size:26
Alignment explanation
Indices: 19740080--19740131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19740070 GTTGACTTAG
19740080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19740106 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19740131 G
1 G
19740132 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19741135 original size:154 final size:152
Alignment explanation
Indices: 19740866--19741155 Score: 382
Period size: 154 Copynumber: 1.9 Consensus size: 152
19740856 CGAGGGTTTT
* * * * **
19740866 GGTAGCAGGATCGGTAGCACACAGAGGGAGACTCGGCTGAACCCTGGCTTGTGCATCCTGCCCTC
1 GGTAGCAGGATCGGTAGCACACAAAGGGAGACCCAGCCGAACCCTGGCTTACGCATCCTGCCCTC
* * * * **
19740931 TGGCCGGCTAAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAATTATACGGAGTTCATTCCCAG
66 CGGCCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAG
*
19740996 TTTAAGATCAAACCAGACTGAG
131 TCTAAGATCAAACCAGACTGAG
* * *
19741018 GGTAGCAGGATCGGTAGCACGCAAAGGGGGACCCAGCCGATCCCCTGGCTTACGCATCCTGCCCC
1 GGTAGCAGGATCGGTAGCACACAAAGGGAGACCCAGCCGA-ACCCTGGCTTACGCATCCTG-CCC
* * * *
19741083 TCCGGCCAGCTGAGCGCCCGTACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
64 TCCGGCCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCC
19741148 AGTCTAAG
129 AGTCTAAG
19741156 CATACAGAGT
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
152 34 0.29
153 17 0.15
154 65 0.56
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (152 bp):
GGTAGCAGGATCGGTAGCACACAAAGGGAGACCCAGCCGAACCCTGGCTTACGCATCCTGCCCTC
CGGCCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACCAGACTGAG
Found at i:19741159 original size:26 final size:26
Alignment explanation
Indices: 19741129--19741181 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19741119 GTTGACTTAG
*
19741129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19741155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
19741181 G
1 G
19741182 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:19742190 original size:26 final size:26
Alignment explanation
Indices: 19742161--19742213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19742151 GTTGACTTAG
19742161 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19742187 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19742213 G
1 G
19742214 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19743225 original size:26 final size:25
Alignment explanation
Indices: 19743195--19743246 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
19743185 GTTGACTTAG
19743195 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATT-CCAATCTAA
* *
19743221 GCATACGGAGTTCATTCTAATCTAA
1 GCATACAGAGTTCATTCCAATCTAA
19743246 G
1 G
19743247 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAATCTAA
Found at i:19744288 original size:26 final size:26
Alignment explanation
Indices: 19744252--19744304 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19744242 GTTGACTTAG
19744252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19744278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19744304 G
1 G
19744305 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:19745183 original size:26 final size:26
Alignment explanation
Indices: 19745147--19745197 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19745137 TGACTTAGTT
*
19745147 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCTAGTCTAAGC
19745173 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCTAGTCTAAG
19745198 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCTAGTCTAAGC
Found at i:19745317 original size:179 final size:179
Alignment explanation
Indices: 19745041--19745388 Score: 489
Period size: 179 Copynumber: 1.9 Consensus size: 179
19745031 TTGCGATAGT
* * * **
19745041 AGGATGGGCAGCACACAGAGGGAGACCCCACTGATCCCTGGCTTGCGCATCCTACCCCTCTAGTT
1 AGGATGGGCAGCACACAGAGGGAGACCCCACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCC
* * * ** * *
19745106 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGTTATACGGAGTTCATTCCTAGTCTAA
66 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
19745171 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTAGC
131 GCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTAGC
* * * * * *
19745220 AGGATTGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCTGCCCCTCTGGCC
1 AGGATGGGCAGCACACAGAGGGAGACCCCACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCC
*
19745285 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
66 GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
19745350 GCACACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
131 GCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
19745389 CGAAGGTTGT
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
179 146 1.00
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (179 bp):
AGGATGGGCAGCACACAGAGGGAGACCCCACCGATCCCCGGCTTACGCATCCTACCCCTCTAGCC
GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
GCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTAGC
Found at i:19746045 original size:25 final size:26
Alignment explanation
Indices: 19746007--19746058 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
19745997 GTTGACTTAG
19746007 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
19746033 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19746058 G
1 G
19746059 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:19747762 original size:26 final size:26
Alignment explanation
Indices: 19747733--19747785 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19747723 GTTGACTTAG
**
19747733 GCATACGAAGTTCATTCTTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
19747759 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
19747785 G
1 G
19747786 ATCGGAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19749764 original size:26 final size:26
Alignment explanation
Indices: 19749724--19749776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19749714 GTTGACTTAG
19749724 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
* *
19749750 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
19749776 G
1 G
19749777 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:19751801 original size:157 final size:157
Alignment explanation
Indices: 19751588--19751878 Score: 404
Period size: 157 Copynumber: 1.9 Consensus size: 157
19751578 GAAACCCGAC
* * * *
19751588 CGATCCCCGGCTTGCGCATCTTGCCCCTCTAATCGACTGAACGCCCGCACGTTCGTTTCACGGGT
1 CGATCCCCGGCTTGCACATCCTGCCCCTCTAACCGACTGAACGCCCGCACGCTCGTTTCACGGGT
* ** *
19751653 TGACTTAGTTATACAGAGTTCATTCCCAGTCT-AAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 TGAATTAGGCATACAGAGTTCATTCCCAGT-TGAAGCATACGGAGTTCATTCCCAGTCTAAGATC
19751717 AGACCGGACCAAGGGTAGCAGGATCGAT
130 AGACCGGACCAAGGGTAGCAGGATCGAT
* ** * **
19751745 CGATCCCCGGCTTGCACATCCTGCCCTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCACATCCTGCCCCTCTAACCGACTGAACGCCCGCACGCTCGTTTCACGGGT
** * *
19751810 TGAATTAGGCATATGGAGTTCATTCCCAGTTGAAGCATGCGGAGTTCATTCCCAGTCTAAGATCG
66 TGAATTAGGCATACAGAGTTCATTCCCAGTTGAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
19751875 GACC
131 GACC
19751879 AGATCGAGGG
Statistics
Matches: 115, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
156 1 0.01
157 114 0.99
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (157 bp):
CGATCCCCGGCTTGCACATCCTGCCCCTCTAACCGACTGAACGCCCGCACGCTCGTTTCACGGGT
TGAATTAGGCATACAGAGTTCATTCCCAGTTGAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCAAGGGTAGCAGGATCGAT
Found at i:19751976 original size:183 final size:183
Alignment explanation
Indices: 19751745--19752112 Score: 578
Period size: 183 Copynumber: 2.0 Consensus size: 183
19751735 CAGGATCGAT
*
19751745 CGATCCCCGGCTTGCACATCCTGCCCTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
19751810 TGAATTAGGCATATGGAGTTCATTCCCAGT-TGAAGCATGCGGAGTTCATTCCCAGTCTAAGATC
66 TGAATTAGGCATACGGAGTTCATTCCCAGTCT-AAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
19751874 GGACCAGATCGAGGGTTACGATAGCACATGCTGGGCTCAAGCATGTGTTGGGGC
130 GGACCAGACCGAGGGTTACGATAGCACATGCTAGGCTCAAGCATGTGCTGGGGC
*
19751928 CGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-AGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
19751992 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATC
65 TTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** *
19752057 GGACCAGACCGAGGGTTGCGATAGCATATGCTAGGCTCGGGCATGTGCTGGTGC
130 GGACCAGACCGAGGGTTACGATAGCACATGCTAGGCTCAAGCATGTGCTGGGGC
19752111 CG
1 CG
19752113 TAGCTTTTTT
Statistics
Matches: 169, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
182 1 0.01
183 167 0.99
184 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (183 bp):
CGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTACGATAGCACATGCTAGGCTCAAGCATGTGCTGGGGC
Found at i:19752040 original size:26 final size:26
Alignment explanation
Indices: 19752004--19752053 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
19751994 GACTTAGGCA
19752004 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
19752030 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
19752054 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:19752918 original size:26 final size:26
Alignment explanation
Indices: 19752889--19752939 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19752879 TGACTTAGTT
*
19752889 ATATGGAGTTCATTCCCAGTGTAAGC
1 ATATGGAGTTCATTCCCAGTCTAAGC
19752915 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
19752940 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGC
Found at i:19753105 original size:26 final size:26
Alignment explanation
Indices: 19753066--19753118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19753056 GTTGACTTAG
*
19753066 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCACTCCCAGTCTAA
*
19753092 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAATTCACTCCCAGTCTAA
19753118 G
1 G
19753119 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCACTCCCAGTCTAA
Found at i:19755056 original size:26 final size:26
Alignment explanation
Indices: 19755027--19755077 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
19755017 TGACTTAGTT
*
19755027 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
19755053 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
19755078 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:19756765 original size:26 final size:26
Alignment explanation
Indices: 19756736--19756786 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19756726 TGACTTAGTT
19756736 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
**
19756762 ATACGGAGTTCATTCTTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
19756787 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:19761281 original size:26 final size:26
Alignment explanation
Indices: 19761252--19761304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19761242 CCGATTTGAT
19761252 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* **
19761278 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19761304 C
1 C
19761305 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:19762287 original size:159 final size:159
Alignment explanation
Indices: 19761998--19762287 Score: 411
Period size: 159 Copynumber: 1.8 Consensus size: 159
19761988 AACTCTGTCT
* * *
19761998 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
* * * *
19762063 TCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGATC
66 TCAGTCGGAGAGGCAGAATACGCAAGCCAGGGATCGGACCGGTCCCCCCCTACGTCCTGTCGATC
19762128 CCACTGCCACAACCCTCGGTTCGGCTAGG
131 CCACTGCCACAACCCTCGGTTCGGCTAGG
*** * *
19762157 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
* * * * *
19762222 TC-GATCGGAGAGGCAGAATATGTAAGCCGGGGATTGGCCCGGTCCCCCCCTACGTCCTGTCGAT
66 TCAG-TCGGAGAGGCAGAATACGCAAGCCAGGGATCGGACCGGTCCCCCCCTACGTCCTGTCGAT
19762286 CC
130 CC
19762288 TGCTACTAGT
Statistics
Matches: 113, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
158 1 0.01
159 112 0.99
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
TCAGTCGGAGAGGCAGAATACGCAAGCCAGGGATCGGACCGGTCCCCCCCTACGTCCTGTCGATC
CCACTGCCACAACCCTCGGTTCGGCTAGG
Found at i:19762358 original size:26 final size:26
Alignment explanation
Indices: 19762329--19762381 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19762319 CCGATTTGAA
*
19762329 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
19762355 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
19762381 C
1 C
19762382 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:19762864 original size:26 final size:26
Alignment explanation
Indices: 19762828--19762880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19762818 CCGGTCCGAT
* *
19762828 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
19762854 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
19762880 C
1 C
19762881 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:19763574 original size:26 final size:26
Alignment explanation
Indices: 19763538--19763590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763528 TCGATCTGAT
19763538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19763564 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19763590 C
1 C
19763591 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19763934 original size:26 final size:26
Alignment explanation
Indices: 19763905--19763957 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19763895 CTGGTCCGAT
19763905 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
19763931 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19763957 C
1 C
19763958 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19765179 original size:26 final size:26
Alignment explanation
Indices: 19765141--19765193 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19765131 CCGGTGGGAT
19765141 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19765167 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19765193 C
1 C
19765194 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19765302 original size:184 final size:184
Alignment explanation
Indices: 19764953--19765351 Score: 466
Period size: 184 Copynumber: 2.2 Consensus size: 184
19764943 TGGTCTAGTT
* * *
19764953 CGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATACCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATACCTAAGCCA
* *
19765018 ACCCACGAAACGAACGTGCAGGCGCTCAGTCGACAGGAGAGGCAGAATGCGCAAGCCGAGGGTCA
66 ACCAACGAAACGAACGTGCAGGCGCTCAGTCGACAGGAGAGGCAGAATACGCAAGCCGAGGGTCA
* * *
19765083 ACCTGGTCCCTCCTGCATGCTACCGATCCTGCTGCCGCAACCCTC-GATCCGGTG
131 ACCTGGTCCCTCCTACATGCTACCAATCCTGCTGCCACAACCCTCAG-TCCGGTG
* * * * *
19765137 GGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-ATGGAATGAACTTCGTATGCCTAAGCC
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATACCTAAGCC
* * * * *
19765201 AACCAACGAAACGAGCGTGCGGGTGCTCAGTCGATC-GGAGAGGCAGAATACGCAAGTCG-GGGG
65 AACCAACGAAACGAACGTGCAGGCGCTCAGTCGA-CAGGAGAGGCAGAATACGCAAGCCGAGGGT
** * * ** * * * *
19765264 CTGGCTTGGTGCCC-CCTACGTGCTGTCAATCTTGCTGCCACAACCTTCAGTCTGGTT
129 C-AACCTGGT-CCCTCCTACATGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTG
19765321 CGATCTTAGACTGGGAATGAACTCCATATGC
1 CGATCTTAGACTGGGAATGAACTCCATATGC
19765352 CTAAGTCAAC
Statistics
Matches: 179, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
183 5 0.03
184 169 0.94
185 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATACCTAAGCCA
ACCAACGAAACGAACGTGCAGGCGCTCAGTCGACAGGAGAGGCAGAATACGCAAGCCGAGGGTCA
ACCTGGTCCCTCCTACATGCTACCAATCCTGCTGCCACAACCCTCAGTCCGGTG
Found at i:19765581 original size:159 final size:158
Alignment explanation
Indices: 19765166--19765581 Score: 426
Period size: 159 Copynumber: 2.6 Consensus size: 158
19765156 AACTTCGTAT
* * *
19765166 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** * * *
19765231 TCGATCGGAGAGGCAGAATACGCAAGTCGGGGGCTGGCTTGGTGCCCCCTACGTGCTGTCAATCT
66 TCGATCGGAGAGGCAGAATACGCAAGTCGAGGATTGACCTGGTGCCCCCTACGTGCTGTCAATCC
* * ****
19765296 TGCTGCCACAACCTTCAGTCTGGTTCGA
131 CGCTGCCACAACCCTCAGTCCAACTCGA
* * * * * *
19765324 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGTGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * *
19765388 G-CTGATCGGATAGGCATAATACGCAAGCCGAGGATTGACCTGGT-CCCCTTATGCGTGCTGTCA
65 GTC-GATCGGAGAGGCAGAATACGCAAGTCGAGGATTGACCTGGTGCCCCCTA--CGTGCTGTCA
* * *
19765451 GTCCCGCTGCCACAACCCTCAGTCCAACTGGG
127 ATCCCGCTGCCACAACCCTCAGTCCAACTCGA
* * * * *
19765483 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
19765548 TC-AGCCGAAGAGGCAGAATGCGTAAGTCGAGGAT
66 TCGA-TCGGAGAGGCAGAATACGCAAGTCGAGGAT
19765582 CAGCCCGATC
Statistics
Matches: 205, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 8 0.04
158 88 0.43
159 107 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGATCGGAGAGGCAGAATACGCAAGTCGAGGATTGACCTGGTGCCCCCTACGTGCTGTCAATCC
CGCTGCCACAACCCTCAGTCCAACTCGA
Found at i:19766269 original size:157 final size:157
Alignment explanation
Indices: 19765999--19766514 Score: 522
Period size: 157 Copynumber: 3.3 Consensus size: 157
19765989 GTCTTGCTAT
* * * *
19765999 CGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CGTAACCCTCGATCTGATC-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACG
* * * * * * *
19766064 AAACGAG-TGTGCAGGCACTCAACCGGTAGGAGAGGCAGAATGCCCAAGCC-GGGGTCAGACCCG
65 AAACGAGCT-TGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATC-GGCCCG
* *
19766127 AT-CCCCCTGCGTGCTGTCGATCCTACTGT
128 ATACCCCCTGCGTGCTGTCGATCCTGCTGC
* *
19766156 CGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
1 CGTAACCCTCGATCTGAT-CGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACG
* * * *
19766221 AAATGAGCTTGCGGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGTT
65 AAACGAGCTTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGAT
* * * *
19766286 CCCCCTCTGCGTGCTGCCCATCTTGCTGC
130 ACCCC-CTGCGTGCTGTCGATCCTGCTGC
* * * * * ** * *
19766315 CATAACCCTCGGTCGGCTGGGGCTTAGACAT-GGCATGAACTCCT-TATGCCTAAGCCAACCCAT
1 CGTAACCCTCGATCTGATCGATCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGCCAACCCAC
* * * * * *
19766378 GAAACGGGCATGCGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGG
64 GAAACGAGCTTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGA
*
19766443 TAACCCCTGCGTG-TAGTCGATCCTGCTGC
129 TACCCCCTGCGTGCT-GTCGATCCTGCTGC
* * * *
19766472 CGCAACCCTCGATCTGGTTTGATCTTAGACTAGGAATGAACTC
1 CGTAACCCTCGATCT-GATCGATCTTAGACTGGGAATGAACTC
19766515 CATATGCTTA
Statistics
Matches: 294, Mismatches: 55, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 135 0.46
158 123 0.42
159 35 0.12
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CGTAACCCTCGATCTGATCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGA
AACGAGCTTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATA
CCCCCTGCGTGCTGTCGATCCTGCTGC
Found at i:19766393 original size:158 final size:157
Alignment explanation
Indices: 19766022--19766521 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 157
19766012 CTGGTCTGAT
* ** * *
19766022 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * * * * *
19766087 CGGTAGGAGAGGCAGAATGCCCAAGCC-GGGGTCAGACCCGATCCCCCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATC-GGCCCGATCCCCCTGCGTGCTGCCCATCCT
* * * *
19766151 ACTGTCGTAACCCTCGATCTGATCCAAT
130 ACTGCCATAACCCTCGATCGGATCCAAG
* * * *
19766179 CTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAATGAGCTTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* *
19766243 CCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGTTCCCCCTCTGCGTGCTGCCCATC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGAT-CCCC-CTGCGTGCTGCCCATC
* * * * ***
19766308 TTGCTGCCATAACCCTCGGTCGGCT-GGGG
128 CTACTGCCATAACCCTCGATCGGATCCAAG
* * * *
19766337 CTTAGACAT-GGCATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * *
19766401 CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTAACCCCTGCGTG-TAGTCGATC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCCTGCGTGCT-GCCCATC
* ** *** *
19766465 CTGCTGCCGCAACCCTCGATCTGG-TTTGAT
128 CTACTGCCATAACCCTCGATC-GGATCCAAG
* *
19766495 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCTTATGC
19766522 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 116 0.41
158 128 0.46
159 35 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTGCGTGCTGCCCATCCTA
CTGCCATAACCCTCGATCGGATCCAAG
Found at i:19766536 original size:26 final size:26
Alignment explanation
Indices: 19766495--19766547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19766485 CTGGTTTGAT
19766495 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
19766521 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19766547 C
1 C
19766548 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19767255 original size:26 final size:26
Alignment explanation
Indices: 19767217--19767269 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19767207 GGCTCAAACT
19767217 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
19767243 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19767269 C
1 C
19767270 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19767735 original size:15 final size:15
Alignment explanation
Indices: 19767715--19767745 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
19767705 CCCCCCTACG
19767715 TGCTGCCGATCCTGC
1 TGCTGCCGATCCTGC
19767730 TGCTGCCGATCCTGC
1 TGCTGCCGATCCTGC
19767745 T
1 T
19767746 ACTGGTCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.26, T:0.29
Consensus pattern (15 bp):
TGCTGCCGATCCTGC
Found at i:19767834 original size:26 final size:26
Alignment explanation
Indices: 19767783--19767835 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19767773 CCGATCCGAT
**
19767783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
19767809 CTTAGACAT-GGAATGAACTCAATATG
1 CTTAGAC-TGGGAATGAACTCAATATG
19767835 C
1 C
19767836 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:19768114 original size:196 final size:195
Alignment explanation
Indices: 19767725--19768101 Score: 450
Period size: 196 Copynumber: 1.9 Consensus size: 195
19767715 TGCTGCCGAT
* * * *
19767725 CCTGCTGCTGCCGATCCTGCTACTGGTCCTACTGCTGCAACCTTCTGTCCGATCCGATCTTAGAC
1 CCTGCTGCTACCGATCCTACTACTGGTCCTACTACTGCAACCTTCGGTCCGATCCGATCTTAGAC
* * *
19767790 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCAATATGCCTAAGCCAAGCCACAAAAT
66 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCAATATGCCTAAACCAACCCACAAAAC
* * * * * *
19767855 GAGCGTACAGGCGCTTAGCCGGCTGGAGAGGCAAAATTCGTAAGCCGGGGACTGACCCGGTCCCC
131 GAGCGTACAGGCGCTCAGCCGACCGAAGAGGCAAAATACGTAAGCCAGGGACTGACCCGGTCCCC
* * * *
19767920 CCTGCTTGCTACCGATCCTACTGCTGGTCCTTCTACTGCAACCCTT-GGTCCGGTCTGATCTTAG
1 CCTGC-TGCTACCGATCCTACTACTGGTCCTACTACTGCAA-CCTTCGGTCCGATCCGATCTTAG
* * ** *
19767984 ATTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAA
64 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCAATATGCCTAAACCAACCCACAAA
* *** * * * * *
19768049 ACGAGTGTGTGGGTGCTCAGTCGACCGAAGAGGTAGAATACGTAAGTCAGGGA
129 ACGAGCGTACAGGCGCTCAGCCGACCGAAGAGGCAAAATACGTAAGCCAGGGA
19768102 TCGGCTCGGT
Statistics
Matches: 149, Mismatches: 31, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
195 5 0.03
196 140 0.94
197 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (195 bp):
CCTGCTGCTACCGATCCTACTACTGGTCCTACTACTGCAACCTTCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCAATATGCCTAAACCAACCCACAAAAC
GAGCGTACAGGCGCTCAGCCGACCGAAGAGGCAAAATACGTAAGCCAGGGACTGACCCGGTCCCC
Found at i:19768411 original size:159 final size:157
Alignment explanation
Indices: 19768004--19768442 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 157
19767994 AACTTCGTAT
* * * *
19768004 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGTGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
19768069 TCGACCGAAGAGGTAGAATACGTAAGTCAGGGATCGGCTCGGTCCCTCCTATATGCTGTCGATCC
65 TCGACCGGAGAGGTAGAATACGCAAGTCAGGGATCAGCTCGGTCCCCCCTGTGTGCTGTCGATCC
* ** ** *
19768134 AACTGCCTTAACCCTCGGTCCGGTCCAA
130 AACTACCACAACCCTCAATCCGCTCCAA
* * * * *
19768162 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAACGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
19768226 GTCGATCGGATAGGCATAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCTCTGTGTGCTGTCGGT
64 GTCGACCGGAGAGGTAGAATACGCAAGTCAGGGATCAGCTCGGTCCCCC-CTGTGTGCTGTCGAT
** ***
19768291 CCCGCTACCACAACCCTCAATCCGACT-GGG
128 CCAACTACCACAACCCTCAATCCG-CTCCAA
* *
19768321 GCTTAGACATGGAATGAACTCTC-TACGCCTAAGCAAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
19768385 GCCAACCGGAGAGGTAGAATACGCAAGTC-GAGGATCAGCTCGATCCCCCCTGCGTGCT
64 GTCGACCGGAGAGGTAGAATACGCAAGTCAG-GGATCAGCTCGGTCCCCCCTGTGTGCT
19768443 ACCGATCCTG
Statistics
Matches: 223, Mismatches: 50, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 99 0.44
159 118 0.53
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGTAGAATACGCAAGTCAGGGATCAGCTCGGTCCCCCCTGTGTGCTGTCGATCCA
ACTACCACAACCCTCAATCCGCTCCAA
Found at i:19768516 original size:26 final size:26
Alignment explanation
Indices: 19768480--19768532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19768470 CTGGTCCAAT
19768480 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGATTGGGAATGAACTTC-GTATG
*
19768506 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
19768532 C
1 C
19768533 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Done.