Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 137 of 138
Found at i:19769392 original size:158 final size:158
Alignment explanation
Indices: 19769031--19769399 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 158
19769021 CCTCGATCTG
* * * * *
19769031 GTCTGATCTTAGACTGGGAATAAACTTTGTATGGCTAAGTCAACACACGAAATGAGCGTACGGGC
1 GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGC
* * * *
19769096 TCTGAGACGACCGGAGAGCCATAATCCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCTTGCTG
66 GCTCAGACGACCGAAGAGCCAGAATCCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCTTGCTG
* * * *
19769161 TCGGTCCCGCTGCCACAACCCTCTATCC
131 TCGATCCAGCTGCCACAACCCCCGATCC
* ** * * * * * *
19769189 GGCTGGGGCTTAG-CGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGG
1 GTCT-GATCTTAGACTA-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGG
* * * * *
19769253 GCGCTCA-ACCGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCC-CTG-TGT
64 GCGCTCAGA-CGACCGAAGAGCCAGAATCCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCT-T
**
19769315 GCTGTCGATCCTAG-TGCTGCAACCCCCGATCC
127 GCTGTCGATCC-AGCTGCCACAACCCCCGATCC
*
19769347 AGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA
1 -GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
19769400 CAAGCGTGCA
Statistics
Matches: 167, Mismatches: 37, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 71 0.43
159 95 0.57
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGC
GCTCAGACGACCGAAGAGCCAGAATCCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCTTGCTG
TCGATCCAGCTGCCACAACCCCCGATCC
Found at i:19769407 original size:158 final size:157
Alignment explanation
Indices: 19769031--19769455 Score: 383
Period size: 158 Copynumber: 2.7 Consensus size: 157
19769021 CCTCGATCTG
* * * * * *
19769031 GTCTGATCTTAGACTGGGAATAAACTTTGTATGGCTAAGTCAACACACGAAATGAGCGTACGGGC
1 GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
* * * * * * *
19769096 TCTGAGACGACCGGAGAGCCATAATCCGTAAGTCAGGGATCGACCCAATCCCCCTCTGCTTGCTG
66 GCTCA-ACGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCTTGCTG
* * * *
19769161 TCGGTCCCGCTGCCACAACCCTCTATCC
130 TCGATCCAGCTGCCACAACCCCCGATCC
* ** * * * * *
19769189 GGCTGGGGCTTAG-CGATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGG
1 GTCT-GATCTTAGACTA-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGG
* *
19769253 GCGCTCAACCGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCC-CTG-TGTG
64 GCGCTCAA-CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCT-TG
**
19769316 CTGTCGATCCTAG-TGCTGCAACCCCCGATCC
127 CTGTCGATCC-AGCTGCCACAACCCCCGATCC
* ** * *
19769347 AGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGA
1 -GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * * * *
19769412 CGCCCAGTCGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATCGA
65 CGCTCA-ACGACCGA-AGAGGCAGAATGCGTAAGTCGGGGATCGA
19769456 ACGGGTGGTA
Statistics
Matches: 210, Mismatches: 48, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 113 0.54
159 95 0.45
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
GCTCAACGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCCAATCCCCCTCTGCTTGCTGT
CGATCCAGCTGCCACAACCCCCGATCC
Found at i:19771002 original size:159 final size:158
Alignment explanation
Indices: 19770587--19771031 Score: 396
Period size: 159 Copynumber: 2.8 Consensus size: 158
19770577 AACTCCGTAT
* * * *
19770587 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
* * * *
19770652 T-CGACCGAAGAGGCAGAATGT-GTAATCTGGGGA-CTGACCCGGTCCCCCTTGTGTGCTATCGA
65 TCCAACCGGAGAGGCAGAAT-TCGTAAGCTGGGGATC-GGCCCGGTCCCCCTTGTGTGCTATCGA
*** * * ** * *
19770714 TCTTGCTATCGCAACCCTCGGTTTGGTTCGA
128 TCCCACTACCACAACCCTCGGTCCGGCTAGA
* * * * * * *
19770745 TCTTAGAC-TGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACAAGCATTCAGGCGCTG
1 GCTTAGACAT-GGAATGAA-TTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* *** * * * ** * * * *
19770808 AGCCTGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTTCTGTGTGCTGTCGG
64 ATCCAACCGGAGAGGCAGAATTCGTAAGCTGGGGATCGGCCCGGTCCCCCT-TGTGTGCTATCGA
* *
19770873 TCCCACTGCCACAACCCTCGGTCCGGCTAGG
128 TCCCACTACCACAACCCTCGGTCCGGCTAGA
* *
19770904 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAT
* * **
19770969 CCAACCGGAGAGGCAGAATTCGTAAGCTGGGGATCGGGCCGGTCCCCCCTGCATGCTATCGAT
66 CCAACCGGAGAGGCAGAATTCGTAAGCTGGGGATCGGCCCGGTCCCCCTTGTGTGCTATCGAT
19771032 ACTGCTGTTA
Statistics
Matches: 215, Mismatches: 64, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
157 1 0.00
158 93 0.43
159 120 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAT
CCAACCGGAGAGGCAGAATTCGTAAGCTGGGGATCGGCCCGGTCCCCCTTGTGTGCTATCGATCC
CACTACCACAACCCTCGGTCCGGCTAGA
Found at i:19771099 original size:26 final size:26
Alignment explanation
Indices: 19771063--19771115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19771053 CCAGTCTAAT
19771063 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
19771089 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
19771115 C
1 C
19771116 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:19771432 original size:672 final size:674
Alignment explanation
Indices: 19770587--19772055 Score: 2147
Period size: 672 Copynumber: 2.2 Consensus size: 674
19770577 AACTCCGTAT
* * *
19770587 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * *
19770652 TCGACCGAAGAGGCAGAATGTGTAATCTGGGGACTGACCCGGTCCCCCTTGTGTGCTATCGATCT
66 CCGACCGAAGAGGCAGAATG-GCAAGCTGGGGACTGACCCGGTCCCCCTTGCGTGCTATCGATCT
* * *
19770717 TGCTATCGCAACCCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
130 TGCTACCGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* *
19770782 CCCACGAAACAAGCATTCAGGCGCTGAGCCTGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGG
195 CCCACGAAACAAGCATTCAGGCGCTGAGCCTGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGA
* ** **
19770847 CCCAGTCCCCTTCTGTGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGAC
260 CCCAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGAC
* * * *
19770912 ATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCATCCAACCGG
325 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCAACCGG
* ** * * * * *
19770977 AGAGGCAGAATTCGTAAGCTGGGGATCGGGCCGGTCCCCCCTGCATGCTATCGATACTGCTGTTA
390 AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTATCGATACTACTGTTA
19771042 CAACCCTCGGTCCAG-TCTAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAA
455 CAACCCTCGGT-CAGATCTAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAA
*
19771106 CTCTGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGTGCTCAGTCGGTCGG-A-G-AGGCA
519 CTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGTGCTCAGTCGGTCGGAAGGAAGGCA
* * * * *
19771168 TAATGTGCAACCCTGGGATCAACCTGATCCCCTTCTACTTGCTGTCGATCCTGCTTCCAGTCCTA
584 TAATGTGCAACCCAGGGATCAACCCGATCCCCTTCTACGTGCTGTCGATCCCGCTACCAGTCCTA
** *
19771233 CTGCCACAACCCTCGGTCCGGCTGGG
649 CTGCCACAACCCTCGGTCCGAATAGG
* *
19771259 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCTTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
19771324 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACTGACCCGGT-CCCCTCTGCGTGCTATCGATC
66 CCGACCGAAGAGGCAGAATG-GCAAGCTGGGGACTGACCCGGTCCCCCT-TGCGTGCTATCGATC
*
19771388 TTGCTACCGTAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
129 TTGCTACCGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* * *
19771453 ACCCATGAAACAAGCATTTAGGCGCTGAGCTTGCCGGAGAGGCATAATGCGCAAGCCAGGGATCG
194 ACCCACGAAACAAGCATTCAGGCGCTGAGCCTGCCGGAGAGGCATAATGCGCAAGCCAGGGATCG
* *
19771518 ACCTAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCGGCTTGGGCTTAGA
259 ACCCAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGA
*
19771583 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCAGCCG
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCAACCG
*
19771648 GAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTGTCGATACTACTGTT
389 GAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTATCGATACTACTGTT
* * * * * * *
19771713 GCAACCCTTGGTCTGATCTGATCTTAGACTTGGAATAAACTCTGTATGCTTAGATTGGGGATGAA
454 ACAACCCTCGGTCAGATCTAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAA
* *
19771778 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAGTCGGTCGGAAAGGCTGGT
519 CTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGTGCTCAGTCGGTCGG-AA-----G-
* * *
19771843 CGAAAAGGCATAATGTGCAAGCCAGGGATCAACCCGATCCCTTTCTGCGTGCTGTCGATCCCGCT
577 -G--AAGGCATAATGTGCAACCCAGGGATCAACCCGATCCCCTTCTACGTGCTGTCGATCCCGCT
** *
19771908 ACCAGTCCTGTTGCCACAACCCTCGGTCCGAATATG
639 ACCAGTCCTACTGCCACAACCCTCGGTCCGAATAGG
* * *
19771944 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * *
19772009 CCGACCGGAGAGGCAGAATGGCAAGCCGGGAATTGACCCGGTCCCCC
66 CCGACCGAAGAGGCAGAATGGCAAGCTGGGGACTGACCCGGTCCCCC
19772056 CTACATGCTG
Statistics
Matches: 708, Mismatches: 73, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
671 7 0.01
672 515 0.73
674 1 0.00
682 1 0.00
684 19 0.03
685 165 0.23
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (674 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGGCAAGCTGGGGACTGACCCGGTCCCCCTTGCGTGCTATCGATCTT
GCTACCGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCACGAAACAAGCATTCAGGCGCTGAGCCTGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGAC
CCAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAGCCAACCGGA
GAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTATCGATACTACTGTTAC
AACCCTCGGTCAGATCTAATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGTGCTCAGTCGGTCGGAAGGAAGGCATA
ATGTGCAACCCAGGGATCAACCCGATCCCCTTCTACGTGCTGTCGATCCCGCTACCAGTCCTACT
GCCACAACCCTCGGTCCGAATAGG
Found at i:19771688 original size:159 final size:158
Alignment explanation
Indices: 19771227--19771688 Score: 475
Period size: 159 Copynumber: 2.9 Consensus size: 158
19771217 CCTGCTTCCA
* *
19771227 GTCCTACTGCCACAACCCTCGGTCCGGCTGGGGCTTGGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTACTGCCACAACCCTCGGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * *
19771292 CCAACCCACAAAACGAGCTTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCTGGGGA
66 CCAACCCACGAAACGAGCATGCAGGCGCTCAGCCG-CCGGAGAGGCAGAATGCGCAAGCCGAGGA
* *
19771357 -CTGACCCGGT-CCCCTCTGCGTGCTATCG
130 TC-GACCCGGTCCCCCTCTACGTGCTACCG
* * * * ** ** *** *
19771385 ATCTTGCTACCGTAACCCTCGGTTTGG-TCCAATCTTAGAC-TGGGAATGAACTTCGTATGCCTA
1 GTCCTACTGCCACAACCCTCGGTCCGGCT-CGGGCTTAGACAT-GGAATGAACTCCGTATGCCTA
* * * ** * * *
19771448 AGTCAACCCATGAAACAAGCATTTAGGCGCTGAGCTTGCCGGAGAGGCATAATGCGCAAGCC-AG
64 AGCCAACCCACGAAACGAGCATGCAGGCGCTCAGC-CGCCGGAGAGGCAGAATGCGCAAGCCGA-
**
19771512 GGATCGACCTAGTCCCCCTCTACGTGCTACCG
127 GGATCGACCCGGTCCCCCTCTACGTGCTACCG
* * *
19771544 GTCCCACTGCCACAACCCTCGGTCCGGCTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTACTGCCACAACCCTCGGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* *
19771609 CCAACCCACGAAACGGGCATGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCGAGGA
66 CCAACCCACGAAACGAGCATGCAGGCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGCCGAGGA
*
19771674 TCGGCCCGGTCCCCC
130 TCGACCCGGTCCCCC
19771689 ATGCATGCTG
Statistics
Matches: 233, Mismatches: 61, Indels: 19
0.74 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 100 0.43
159 128 0.55
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GTCCTACTGCCACAACCCTCGGTCCGGCTCGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGCCGGAGAGGCAGAATGCGCAAGCCGAGGAT
CGACCCGGTCCCCCTCTACGTGCTACCG
Found at i:19772152 original size:26 final size:26
Alignment explanation
Indices: 19772114--19772166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19772104 CCAATTCGAT
19772114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19772140 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19772166 C
1 C
19772167 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19772486 original size:26 final size:26
Alignment explanation
Indices: 19772457--19772509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19772447 TCGGTCCGAT
*
19772457 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
19772483 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19772509 C
1 C
19772510 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19773721 original size:26 final size:26
Alignment explanation
Indices: 19773685--19773737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19773675 CTAGTTCGAT
19773685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19773711 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19773737 C
1 C
19773738 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19774094 original size:26 final size:26
Alignment explanation
Indices: 19774065--19774117 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19774055 TCGGTCCGAT
19774065 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19774091 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19774117 C
1 C
19774118 CTAAGCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19775915 original size:26 final size:26
Alignment explanation
Indices: 19775879--19775931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19775869 CTAGTTCGAT
19775879 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19775905 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19775931 C
1 C
19775932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19776288 original size:26 final size:26
Alignment explanation
Indices: 19776259--19776311 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19776249 TCGGTCCGAT
19776259 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19776285 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19776311 C
1 C
19776312 CTAAGCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19782472 original size:26 final size:26
Alignment explanation
Indices: 19782436--19782488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19782426 CTAGTCTGAT
19782436 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19782462 CTTAGACTGGGCATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
19782488 C
1 C
19782489 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19783908 original size:159 final size:158
Alignment explanation
Indices: 19783478--19783898 Score: 452
Period size: 159 Copynumber: 2.6 Consensus size: 158
19783468 GATCCCACTA
* * ** *
19783478 TCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAACAAACTTCGTATGCCT
1 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * *
19783543 AAGCCAACCCATGAAACGAGTGTGCGAGCGCTCAGCTGGCCGAAGAGGCAGAATGCACAAGCCGT
66 AAGCCAACCCACGAAACGAGTGTGCG-GTGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGT
*
19783608 GGATCGACCCGATCCCCCCCTACGTGCTG
130 GGATCGACCCGATCCCCCCCTACATGCTG
* * * ** * **** *
19783637 TCGATCCTGTTACCGTAACCCTCAGTCCGG-TCCCATCTTAGAC-TGGGAATGAACTCTGTATGC
1 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGC
* * * * * * * * *
19783700 ATAAGTCAACCCACGAAACGAGCGTGCGATCACTGAGTCGGCCGAAGAGGCATAATGCGCAAGCC
64 CTAAGCCAACCCACGAAACGAGTGTGCGGT-GCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCC
* *
19783765 G-GAGATCGACCCGATCCCCCTCTGCATGCTG
128 GTG-GATCGACCCGATCCCCCCCTACATGCTG
* *
19783796 TCGGTCCTGCTGCCACAACCCGCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* *
19783861 AAGCCAACCCACGAAACGGGTGTGTTGGTGCTCAGCCG
66 AAGCCAACCCACGAAACGAGTGTG-CGGTGCTCAGCCG
19783899 ACCAGAGAGG
Statistics
Matches: 202, Mismatches: 53, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
158 3 0.01
159 195 0.97
160 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGTGTGCGGTGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGTG
GATCGACCCGATCCCCCCCTACATGCTG
Found at i:19784018 original size:26 final size:26
Alignment explanation
Indices: 19783989--19784041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19783979 CTGATCTGAT
19783989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
19784015 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19784041 C
1 C
19784042 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19784357 original size:158 final size:159
Alignment explanation
Indices: 19784015--19784358 Score: 440
Period size: 159 Copynumber: 2.2 Consensus size: 159
19784005 ACTCTGTATG
* * ** *
19784015 CTTAGACTGGGGATGAACTCTGTATGCGTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACGAGAGTGCCGGCGCTCAGC
* * * * *
19784080 TAGTCGGAGAGGCATAATACGTAAGTCGGGGATCAGCACGGTCCCCCTCTGCGTGCTGTCTATCC
66 CAGTCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCACGATCCCCCTCTGCGTGCTGTCGATCC
*
19784145 TGCTGCAGCAACCCTCAGTCCGGTCCGAT
131 TGCTGCAGCAACCCTCAGTCCGATCCGAT
* * * *
19784174 CTTAGATTGGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACGATAGTGCCGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACGAGAGTGCCGGCGCTCAGC
* * * * *
19784239 CGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGC-CTGATCCCTC-CTGCGTGCTGTCGATC
66 CAGTCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCAC-GATCCCCCTCTGCGTGCTGTCGATC
** * *
19784302 CTGCTGTTGCAACCCTCGGTCCGATCTGAT
130 CTGCTGCAGCAACCCTCAGTCCGATCCGAT
*
19784332 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
19784359 TTAGACATGG
Statistics
Matches: 158, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 66 0.42
159 92 0.58
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACGAGAGTGCCGGCGCTCAGC
CAGTCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCACGATCCCCCTCTGCGTGCTGTCGATCC
TGCTGCAGCAACCCTCAGTCCGATCCGAT
Found at i:19784361 original size:26 final size:26
Alignment explanation
Indices: 19784332--19784384 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19784322 CCGATCTGAT
19784332 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19784358 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19784384 C
1 C
19784385 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19784421 original size:343 final size:341
Alignment explanation
Indices: 19783832--19784560 Score: 819
Period size: 342 Copynumber: 2.1 Consensus size: 341
19783822 CCGGCTGGGG
* * * ** *
19783832 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGT-GTGTTGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAAC-GATAGTGCCGGTGTTCA
** * * *** * ** * * *
19783895 GCCGACCAGAGAGGTAGAATATACAGGCCGGGGACCTGCCCGATCCCCCTGCGTGCTGCCAATCC
64 GCCGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGATCCCCCTGCGTGCTGCCAATCC
* * *
19783960 TACTGCCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
129 TACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * *
19784025 GGATGAACTCTGTATGCGTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAG-CTAGTCGGAG
194 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTGAGGGCGCTCAGTC-AGTCGGAG
* ** *
19784089 AGGCATAATACGTAAG-TCGGGGATCAGCACGGTCCCCCTCTGCGTGCTGTCT-ATCCTGCTG-C
258 AGGCAAAATACACAAGCT-GGGGATCAGCACGGTCCCCC-CTGCGTGCTGT-TGATCCTACTGTC
19784151 AGCAACCCTCA-GTCCGGTCCGAT
320 -GCAACCCT-AGGTCCGGTCCGAT
* *
19784174 CTTAGATTGGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACGATAGTGCCGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGATAGTGCCGGTGTTCAGC
* *
19784239 CGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGATCCCTCCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGATCCC-CCTGCGTGCTGCCAATCCT
* **
19784304 GCTGTTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-G
130 ACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGG
* * *
19784368 GAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGCA-TGAGGGCGCTCAGTCGGTCGGAG
194 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG-AGTGAGGGCGCTCAGTCAGTCGGAG
* * ** * *
19784432 GGGCAAAATGCACAAGCTGGGGATTGGCCCGGTCCCTCCTGCGTGCTGTTGATCCTACTGTCGCA
258 AGGCAAAATACACAAGCTGGGGATCAGCACGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCA
19784497 ACCCTAGGTCCGGTCCGAT
323 ACCCTAGGTCCGGTCCGAT
* * ** *
19784516 CTTAGGCTGGGAATGATCTCCGTATGCCTAAGTCAACCCATGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAA
19784561 TGACCGTACA
Statistics
Matches: 322, Mismatches: 55, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
341 5 0.02
342 161 0.50
343 152 0.47
344 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGATAGTGCCGGTGTTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGATCCCCCTGCGTGCTGCCAATCCTA
CTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTGAGGGCGCTCAGTCAGTCGGAGAGG
CAAAATACACAAGCTGGGGATCAGCACGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCAACC
CTAGGTCCGGTCCGAT
Found at i:19784660 original size:343 final size:343
Alignment explanation
Indices: 19783939--19784664 Score: 777
Period size: 343 Copynumber: 2.1 Consensus size: 343
19783929 CCTGCCCGAT
* * ** ** *
19783939 CCCCCTGCGTGCTGCCAATCCTACTGCCGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATG
1 CCCCCTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* * * * * * *
19784004 AACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCGTAAGTCAACCCACGAAACGAGAGTGC
66 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTGA
* **
19784069 GGGCGCTCAGCTAGTCGGAGAGGCATAATACGTAAGTCGGGGATCAGCACGGTCCCCCTCTGCGT
131 GGGCGCTCAGCTAGTCGGAGAGGCAAAATACACAAGTCGGGGATCAGCACGGTCCCCCTCTGCGT
* * *
19784134 GCTGTCTATCCTGCTGCAGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCTGTAT
196 GCTGTCTATCCTACTGCAGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * *
19784199 GCCTAAACCAACCCACGAAACGATAGTGCCGGTGTTCAGCCGGTCGGAGAGGCAGAATGCGCAAG
261 GCCTAAACCAACCCACGAAACGACAGTACAGGCGTTCAGCCGATCGAAAAGGCAGAATACGCAAG
** *
19784264 TTGGGGATCGGCCTGATC
326 CCGGGGATCGACCTGATC
* * * * ***
19784282 CCTCCTGCGTGCTGTCGATCCTGCTGTTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
1 CCCCCTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
* *
19784347 AACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGCA-T
66 AACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG-AGT
* * * ** * *
19784410 GAGGGCGCTCAG-TCGGTCGGAGGGGCAAAATGCACAAG-CTGGGGATTGGCCCGGTCCCTC-CT
129 GAGGGCGCTCAGCT-AGTCGGAGAGGCAAAATACACAAGTC-GGGGATCAGCACGGTCCCCCTCT
* *
19784472 GCGTGCTGT-TGATCCTACTGTC-GCAACCCT-AGGTCCGGTCCGATCTTAGGCTGGGAATGATC
192 GCGTGCTGTCT-ATCCTACTG-CAGCAACCCTCA-GTCCGGTCCGATCTTAGACTGGGAATGAAC
** * * * * *
19784534 TCCGTATGCCTAAGTCAACCCATGAAATGACCGTACAGGCGTTGAGCCGATCGAAAAGGCATAAT
254 TCCGTATGCCTAAACCAACCCACGAAACGACAGTACAGGCGTTCAGCCGATCGAAAAGGCAGAAT
* *
19784599 ACGCATGCCGGGGATCGA-CTCGGTC
319 ACGCAAGCCGGGGATCGACCT-GATC
*
19784624 CCCCTCTGCGTCCTGCCGGTCCCGCTGCCACAACCCTCGGT
1 CCCC-CTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGT
19784665 TTGGCTAGAG
Statistics
Matches: 314, Mismatches: 60, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
341 4 0.01
342 125 0.40
343 183 0.58
344 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (343 bp):
CCCCCTGCGTCCTGCCGATCCCGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTGA
GGGCGCTCAGCTAGTCGGAGAGGCAAAATACACAAGTCGGGGATCAGCACGGTCCCCCTCTGCGT
GCTGTCTATCCTACTGCAGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAACCAACCCACGAAACGACAGTACAGGCGTTCAGCCGATCGAAAAGGCAGAATACGCAAG
CCGGGGATCGACCTGATC
Found at i:19784847 original size:159 final size:159
Alignment explanation
Indices: 19784358--19784860 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 159
19784348 ACTCCGTATG
* ** *
19784358 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGCATG-AGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGCGCTCA
* * * * * * *
19784421 G-TCGGTCGGAGGGGCAAAATGCACAAGCTGGGGATTGGCCCGGT-CCCTCCTGCGTGCTGTTGA
65 GCT-GATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCT-CTGCGTGCTGTCGA
* * *
19784484 TCCTACTGTCGCAACCCT-AGGTCCGGTCCGAT
128 TCCTGCTGCCGCAACCCTCA-GTCCGGTTCGAT
* * * * * * *
19784516 CTTAGGCTGGGAATGATCTCCGTATGCCTAAGTCAACCCATGAAATGACCGTACA-GGCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGCGCTCAG
* * * * * * * * * *
19784580 CCGATCGAAAAGGCATAATACGCATGCCGGGGATCGACTCGGTCCCCCTCTGCGTCCTGCCGGTC
66 CTGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGTCGATC
* * * ** * * *
19784645 CCGCTGCCACAACCCTCGGTTTGGCTAGAG
130 CTGCTGCCGCAACCCTCAGTCCGGTTCGAT
* *
19784675 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGCGCTCA
* * * *
19784739 GCTGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCGTGCTATCGATC
65 GCTGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATC
* *
19784804 CTGCTAG-CGTAACCGTCAGTCCGGTTCGAT
130 CTGCT-GCCGCAACCCTCAGTCCGGTTCGAT
* *
19784834 CATAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
19784861 TTAGATTAGG
Statistics
Matches: 261, Mismatches: 74, Indels: 19
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.00
158 79 0.30
159 134 0.51
160 47 0.18
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGCGCTCAG
CTGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGGTTCGAT
Found at i:19784865 original size:26 final size:26
Alignment explanation
Indices: 19784836--19784886 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
19784826 GGTTCGATCA
19784836 TAGACT-GGGAATGAACT-TCGTATGCT
1 TAGACTAGGG-ATGAACTCT-GTATGCT
*
19784862 TAGATTAGGGATGAACTCTGTATGC
1 TAGACTAGGGATGAACTCTGTATGC
19784887 CTATGTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCTGTATGCT
Found at i:19785185 original size:170 final size:169
Alignment explanation
Indices: 19784872--19785226 Score: 407
Period size: 170 Copynumber: 2.1 Consensus size: 169
19784862 TAGATTAGGG
* * *
19784872 ATGAACTCTGTATGCCTATGTCAATCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACTGGAGAGG
* * * * *
19784937 CATAATACGTAAGCCAGGGATTAGCCCGGTCCCCCTCTGCATACTTCGATCCCGCTGGCGGTCCT
66 CAGAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATAC-TCCATCCCGCTGACGGTCCT
* *
19785002 GCTGCCACAACCCTCGATCCGGT-TGGGGCTTAGACATG-GA
130 GCTGCCACAACCCTCGATCCAGTCT-GAGCTTAGAC-TGAGA
19785042 ATGAACTCTGTATGCCTAAG-CTAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACTGGAGAG
1 ATGAACTCTGTATGCCTAAGTC-AACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACTGGAGAG
* * * * * *
19785106 GTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGTCTGTGAC-CCATCCTGCT-ACTGG
65 GCAGAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTG-C-AT-ACTCCATCCCGCTGAC-GG
* ** *
19785168 TCTTGCTGCTGCAACCCTCGATCCAGTCTGATCTTAGACTGAGA
126 TCCTGCTGCCACAACCCTCGATCCAGTCTGAGCTTAGACTGAGA
*
19785212 ATGAACTCCGTATGC
1 ATGAACTCTGTATGC
19785227 TTAGAAATGG
Statistics
Matches: 157, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
169 7 0.04
170 146 0.93
171 2 0.01
172 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (169 bp):
ATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACTGGAGAGG
CAGAATACGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATACTCCATCCCGCTGACGGTCCTG
CTGCCACAACCCTCGATCCAGTCTGAGCTTAGACTGAGA
Found at i:19785319 original size:366 final size:355
Alignment explanation
Indices: 19784640--19785335 Score: 835
Period size: 366 Copynumber: 1.9 Consensus size: 355
19784630 TGCGTCCTGC
* **
19784640 CGGTCCCGCTGCCACAACCCTCGGTTTGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTA
* *
19784705 AGCCAACCCATGAAATGGGCGTGCAGGGCGCTCAGCTGACCGGAGAGGCAGAATGCGCAAGCCGA
66 AGCCAACCCATGAAATGAGCGTGCAGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA
* * * * *
19784770 GGATCGACCCGGTCCCCTCTGCGTGCTATCGATCCTGCTAGCGTAACCGTCAGTCCGGTTCGATC
131 GGATCGACCCGGTCCCCCCTGCGTGCCATCGATACTGCTAGCGTAACCCTCAGTCCAGTTCGATC
* * * * * * * *
19784835 ATAGACTGGGAATGAACTTCGTATGCTTAGATTAGGGATGAACTCTGTATGCCTATGTCAATCCA
196 ATAGACTGAGAATGAACTCCGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * ** *
19784900 TGAAATGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCATAATACGTAAGCCAGGGATTAGCCCG
261 TAAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATACACAAGCCAGGGATCAGCCCG
19784965 GTCCCCCTCTGCATACTTCGATCCCGCTGG
326 GTCCCCCTCTGCATACTTCGATCCCGCTGG
* * * * **
19784995 CGGTCCTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * *
19785060 AGCTAACCCATGAAATGAGCGTGC-GGGCGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGCCGG
66 AGCCAACCCATGAAATGAGCGTGCAGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA
* * *
19785124 GGATCGGCCCGGTCCCCCCTGTCTGTGACCCATCCTGCTACTGGTCTTGCTGCTGCAACCCTC-G
131 GGATCGACCCGGTCCCCCCTG-C-GTG--CCAT-C-GATACT-G-CTAGC-G-T--AACCCTCAG
*
19785188 ATCCAG-TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAA-ATGGAATGAACTCCGTAT
184 -TCCAGTTC-GATCATAGACTGAGAATGAACTCCGTATGCTTAGAATA-GGAATGAACTCCGTAT
* * *
19785251 GCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCAGTCGG-TCGGAGAGGCAGAATGCACAA
246 GCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGCAGAATACACAA
*
19785315 GCCAGGGATCGGCCCGGTCCC
310 GCCAGGGATCAGCCCGGTCCC
19785336 TCCTTACGTG
Statistics
Matches: 283, Mismatches: 42, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
354 55 0.19
355 79 0.28
356 3 0.01
358 3 0.01
359 1 0.00
360 4 0.01
361 1 0.00
362 4 0.01
363 1 0.00
364 1 0.00
365 5 0.02
366 126 0.45
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (355 bp):
CGGTCCCGCTGCCACAACCCTCGATCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCATGAAATGAGCGTGCAGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA
GGATCGACCCGGTCCCCCCTGCGTGCCATCGATACTGCTAGCGTAACCCTCAGTCCAGTTCGATC
ATAGACTGAGAATGAACTCCGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCA
TAAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATACACAAGCCAGGGATCAGCCCG
GTCCCCCTCTGCATACTTCGATCCCGCTGG
Found at i:19785421 original size:26 final size:26
Alignment explanation
Indices: 19785385--19785437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19785375 TCGGTCTGAT
*
19785385 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
19785411 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19785437 C
1 C
19785438 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19792058 original size:26 final size:26
Alignment explanation
Indices: 19792021--19792071 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19792011 GCTTAAAATC
19792021 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
19792047 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
19792072 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:19792245 original size:26 final size:26
Alignment explanation
Indices: 19792216--19792268 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19792206 CCGATCTGAT
19792216 CTTAGA-TCGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
*
19792242 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19792268 C
1 C
19792269 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19793095 original size:158 final size:157
Alignment explanation
Indices: 19792575--19793087 Score: 514
Period size: 159 Copynumber: 3.2 Consensus size: 157
19792565 CTGCTACTGT
*** *
19792575 AACCCTCGGTCTGGTTTGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCAATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * *
19792640 CGAGCGTGC-AGTGCTCAACCAGCTA-GAGAGGCAGAATGCGCAAGCTGGGGA-CCAACCAAGTC
66 CGAGCGTGCGGGTGCTCAGCCA-C-AGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TC
* * *
19792702 CCCCCTACGTGCTGTTGATCTTGCTGCCGC
128 CCCCCTGCGTGCTGTCGATCCTGCTGCCGC
* * * *
19792732 AACCCTCGGTCCAGTCTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCGGTCCAATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * * * * * *
19792797 CGAACGTGCGGGCGTTGAGCCAACCGGAGAGGCATAATGCGTAAGCCGAGGATCGACTCGGTCCC
66 CGAGCGTGCGGGTGCTCAGCC-ACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
* * *
19792862 CCTCTGTGTGCTG-CTGGTCCTGCTGCCAC
130 CC-CTGCGTGCTGTC-GATCCTGCTGCCGC
* * * ** *
19792891 AACCTTCGGTCCAACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCCAATTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * *
19792955 ATGGGTGTGCGGGTGCTCAGCCGACAGGACAGGCAGAATGCGCAGGCCGGGGATTGACCCGATCC
65 ACGAGCGTGCGGGTGCTCAGCC-ACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
* *
19793020 CCCCTGGGTGCTGTCGATCCTGCTGTCGC
129 CCCCTGCGTGCTGTCGATCCTGCTGCCGC
*
19793049 AACCCTCGGTTCAATTTGATCTTAGACTGGGAATGAACT
1 AACCCTCGGTCCAATTTGATCTTAGACTGGGAATGAACT
19793088 TTGTATGCTT
Statistics
Matches: 282, Mismatches: 65, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 68 0.24
158 86 0.30
159 127 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
AACCCTCGGTCCAATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGGGTGCTCAGCCACAGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
CCTGCGTGCTGTCGATCCTGCTGCCGC
Found at i:19793147 original size:26 final size:26
Alignment explanation
Indices: 19793069--19793139 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
19793059 TCAATTTGAT
19793069 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
19793095 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
*
19793121 CTTAGACTGGGGATGAACT
1 CTTAGACTGGGAATGAACT
19793140 CCATATGCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:19793857 original size:26 final size:26
Alignment explanation
Indices: 19793819--19793871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19793809 GGCTTAAAAT
*
19793819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
19793845 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19793871 C
1 C
19793872 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19794214 original size:159 final size:158
Alignment explanation
Indices: 19793844--19794257 Score: 384
Period size: 159 Copynumber: 2.6 Consensus size: 158
19793834 AACTCCGTAT
* * * *
19793844 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAG
1 GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* *
19793909 CCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATAGACCTGGTCCCCCCTGTGTACTGTCAATCC
66 CCGGTCGAAGAGCCAGAATGCACAAGCCGAGGATAGACCTGGTCCCCCCTGTGTACTGTCAATCC
* * * * *
19793974 TGCTGTCATAACGCTCAGTTTGGTTCAA
131 CGCTGCCATAACCCTCAGTTCGGCTCAA
* * * * * * * *
19794002 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA-TGAGCGTGCGGGCGTTG
1 GCTTAGACATA-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTC
* * * * * * **
19794065 AGCCGGTCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGT-CCCCCTCGATGTGCTGTTG
64 AGCCGGTCGAAGAGCCAGAATGCACAAGCCGAGGATAGACCTGGTCCCCCCT-G-TGTACTGTCA
* * ***
19794129 GTCCCGCTGCCATAGCCCTCAGTTCGGCTGGG
127 ATCCCGCTGCCATAACCCTCAGTTCGGCTCAA
* * * * *
19794161 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCCACCCATGAAACAGGCGTGCAGGTGCTCAA
1 GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
** * ** *
19794226 CCGACCGGAGAGGTAGAATGCGCAAGCCGAGG
66 CCGGTCGAAGAGCCAGAATGCACAAGCCGAGG
19794258 GTCGGCCCGA
Statistics
Matches: 199, Mismatches: 51, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 7 0.04
158 87 0.44
159 102 0.51
160 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
CCGGTCGAAGAGCCAGAATGCACAAGCCGAGGATAGACCTGGTCCCCCCTGTGTACTGTCAATCC
CGCTGCCATAACCCTCAGTTCGGCTCAA
Found at i:19794356 original size:26 final size:26
Alignment explanation
Indices: 19794320--19794371 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794310 CCGATCCGAT
*
19794320 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
19794346 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
19794372 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:19794725 original size:26 final size:26
Alignment explanation
Indices: 19794687--19794737 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794677 CTGGTCTGAT
*
19794687 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19794713 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
19794738 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19794903 original size:26 final size:26
Alignment explanation
Indices: 19794872--19794924 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19794862 CTGGTCCGAT
* *
19794872 CTTAGACTG-GGAATGAAGTCTGTATG
1 CTTAGACTGCGG-ATGAACTCCGTATG
19794898 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGACTGCGGATGAACTCCGTATG
19794924 C
1 C
19794925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATG
Found at i:19795119 original size:26 final size:26
Alignment explanation
Indices: 19795081--19795133 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19795071 CTGATCCGAT
19795081 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19795107 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19795133 C
1 C
19795134 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19795361 original size:158 final size:159
Alignment explanation
Indices: 19795106--19795504 Score: 430
Period size: 158 Copynumber: 2.5 Consensus size: 159
19795096 AACTTCGTAT
* * *
19795106 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * **
19795171 CCGACCGGAGAGACAGAATGCGCAAGTTGGGGACCAGCTCGGT-CTCCTCTGTGTGCTGTCGATC
66 CCGACCGAAGAGACAGAAGGCGCAAGTCGGGGACCAGCTCGATCCCCCTCTACGTGCTGTCGATC
* ** *
19795235 CTGCTACCACAACCCTTGGTCCGGTCT-GA
131 CCGCTACCACAACCCTCAGTCC-GACTGGA
* * * * *
19795264 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCA
* ** * * *
19795328 -CCTGATCGAAGAGTTATAAGGCGCAAGTCGGGGATCAGCTCGATCCCCCTCTACGTGCTGTCGG
65 GCC-GACCGAAGAGACAGAAGGCGCAAGTCGGGGACCAGCTCGATCCCCCTCTACGTGCTGTCGA
*
19795392 TCCCGCTACCACAACCCTCAGTCCGACTGGG
129 TCCCGCTACCACAACCCTCAGTCCGACTGGA
* * * * *
19795423 GCTTAGACATGAAATGAACTCCCTATACCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * *
19795487 CCGGCCGGAGAGGCAGAA
66 CCGACCGAAGAGACAGAA
19795505 TGCACAAGAT
Statistics
Matches: 194, Mismatches: 41, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 111 0.57
159 79 0.41
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGACCGAAGAGACAGAAGGCGCAAGTCGGGGACCAGCTCGATCCCCCTCTACGTGCTGTCGATC
CCGCTACCACAACCCTCAGTCCGACTGGA
Found at i:19795616 original size:26 final size:26
Alignment explanation
Indices: 19795580--19795632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19795570 CTGGTCCGAT
*
19795580 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
19795606 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
19795632 C
1 C
19795633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:19795732 original size:183 final size:182
Alignment explanation
Indices: 19795436--19795789 Score: 451
Period size: 183 Copynumber: 1.9 Consensus size: 182
19795426 TAGACATGAA
* * * * *
19795436 ATGAACTCCCTATACCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAACCGGCCGGAGAGGC
1 ATGAACTCCCTATACCTAAGCCAACCCACGAAACAGCGTACGAGCGCTCAACCGACCGAAGAGGC
* **
19795501 AGAATGCACAAGATAGGGATCGGTCCGATCCCCCTGCGTGTAGTCGATCCTGCTGCCATAACCCT
66 AGAATGCACAAGACAGGGATCGGTCCGATCCCCCTGCGTGTAGTCGATCCTAATGCCATAACCCT
* *
19795566 TGGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGGGG
131 CGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGGGG
* * * * * *
19795618 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGAGTGCTCAACCGATCGAAGAGG
1 ATGAACTCCCTATACCTAAGCCAACCCACGAAAC-AGCGTACGAGCGCTCAACCGACCGAAGAGG
** * * * ***
19795683 CAGAATGCGTAAGCCGGGGATCGG-CTTGATCCCCCTGCGTGCT-GTCGATCCTAATGTTGTAAC
65 CAGAATGCACAAGACAGGGATCGGTC-CGATCCCCCTGCGTG-TAGTCGATCCTAATGCCATAAC
19795746 CCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGC
128 CCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGC
19795790 CTAAGTCAAC
Statistics
Matches: 145, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
182 31 0.21
183 113 0.78
184 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (182 bp):
ATGAACTCCCTATACCTAAGCCAACCCACGAAACAGCGTACGAGCGCTCAACCGACCGAAGAGGC
AGAATGCACAAGACAGGGATCGGTCCGATCCCCCTGCGTGTAGTCGATCCTAATGCCATAACCCT
CGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGGGG
Found at i:19796543 original size:26 final size:26
Alignment explanation
Indices: 19796502--19796554 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19796492 CCGATCCGAT
* *
19796502 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
19796528 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
19796554 C
1 C
19796555 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:19796671 original size:184 final size:184
Alignment explanation
Indices: 19796343--19796712 Score: 481
Period size: 184 Copynumber: 2.0 Consensus size: 184
19796333 TTCGATTGGG
* *
19796343 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGACGTGCGGGTGCTCAA
1 GCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGTGCTCAA
** * * * * * **
19796408 CCGGTCGGAGAGGTAGAATGTGTAAGCCAGGGATCAACCAGGTCCCCCTTGTGTGCTGGCAATCC
66 CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCAGATCCCCCCTACGTGCTGGCAATCC
* * ** * *
19796473 TACTACCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
131 TAATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
19796527 GCTTAGACAGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAAC-GAGCGTGCGGGTGCTCA
1 GCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGA-CGTGCGGGTGCTCA
* * ** * *
19796591 GCCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACTTGATCCCCCCTACGTGCTGTCGATC
65 ACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCAGATCCCCCCTACGTGCTGGCAATC
**
19796656 CTAATGTCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
130 CTAATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
19796711 GC
1 GC
19796713 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 27, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
183 2 0.01
184 156 0.99
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGTGCTCAA
CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCAGATCCCCCCTACGTGCTGGCAATCC
TAATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19796764 original size:501 final size:501
Alignment explanation
Indices: 19796027--19797129 Score: 1319
Period size: 501 Copynumber: 2.2 Consensus size: 501
19796017 CCGATCTAAT
* * *
19796027 CTTAGACTGGGAATGAA-TGCCGTATGCCTAAGCCAACCTA-AGAAACGAGCGTACGGGCGCTCA
1 CTTAGACTGGGGATGAACT-CCGTATGCCTAAGCCAACCCACA-AAACGAGCGTGCGGGCGCTCA
* * * * *
19796090 ACC-AGTCGAAGAGGTAAAATGCACAAGCCGAGGATCGACCCAATCCCTCCCACGTGCTATCGAT
64 GCCGA-CCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCCCACGTGCTATCGAT
* ** * * * * *
19796154 CCTACTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
128 CCTAATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
19796219 AAACCACAAAATGACCGTGAGGGCGTTGAGTCTGCCGGAGAGGCATAATGCA-CAAGCC-AGGGA
193 AAACCACAAAACGACCGTGAGGGCGCTGAGTCGGCCGAAGAGGCATAATG-AGCAAGCCGA-GGA
* * * * *
19796282 TTGGCCCGGTACCCCTCTACGTGCTATCAGTCTCACTGCCACAACCCTCGATTCGATTGGGGCTT
256 TCGGCCCGGTACCCCTCTACGTGCTATCAGTCCCACTGCCACAACCCTCGATCCGACTGGAGCTT
* **
19796347 AGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGACGTGCGGGTGCTCAACCGG
321 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACACGCGGGTGCTCAACCGG
* * * * *
19796412 TCGGAGAGGTAGAATGTGTAAGCCAGG-GATCAACCAGGTCCCCCTTGTGTGCTGGCAATCCTAC
386 CCGGAGAGGCAGAATGCGCAAGCC-GGAGATCAACCAGGTCCCCCTTGCGTGCTGGCAATCCTAC
* *
19796476 TACCGCAACCCTTGGTCC-GATCCGATCTTAGACTGGGAATGAACTTCGTATG
450 TACCGCAACCCTCGGTCCAG-TCCGATCATAGACTGGGAATGAACTTCGTATG
* *
19796528 CTTAGACAGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* *** *
19796593 CGACCGAAGAGGCAGAATGCGTAAGCC-AGGGATCGACTTGATCCC-CCCTACGTGCTGTCGATC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCAATCCCTCCC-ACGTGCTATCGATC
**
19796656 CTAATGTCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
129 CTAATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * *
19796721 ACCCATGAAACGAGCGTGCGGGTGCTGAG-CAGGCCGAAGAGGCATAATGAGCAAGCCGAGGATC
194 AACCACAAAACGACCGTGAGGGCGCTGAGTC-GGCCGAAGAGGCATAATGAGCAAGCCGAGGATC
* * * * * * *
19796785 GGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGAGCTTAG
258 GGCCCGGTACCCCTCTACGTGCTATCAGTCCCACTGCCACAACCCTCGATCCGACTGGAGCTTAG
* * * **
19796850 ACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCACGCGGGTGCTCAGTCGGCC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACACGCGGGTGCTCAACCGGCC
** * * * * *
19796915 GGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGC
388 GGAGAGGCAGAATGCGCAAGCCGGAGATCAACCAGGTCCCCCTTGCGTGCTGGCAATCCTACTAC
* *
19796980 CGCAACCCTCGGTCCAGTTCGATCATAGACTGGGAATGAACTTTGTATG
453 CGCAACCCTCGGTCCAGTCCGATCATAGACTGGGAATGAACTTCGTATG
* * * * * *
19797029 CTTAGACTGGGGATGAACTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* *
19797094 CGACC-AGAGAGGCAGGATGCGCAAGCCGAAGATCGA
66 CGACCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGA
19797130 ATAAGTGGTA
Statistics
Matches: 508, Mismatches: 82, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
500 9 0.02
501 493 0.97
502 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (501 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCTCCCACGTGCTATCGATCCT
AATACCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAA
CCACAAAACGACCGTGAGGGCGCTGAGTCGGCCGAAGAGGCATAATGAGCAAGCCGAGGATCGGC
CCGGTACCCCTCTACGTGCTATCAGTCCCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACACGCGGGTGCTCAACCGGCCGGA
GAGGCAGAATGCGCAAGCCGGAGATCAACCAGGTCCCCCTTGCGTGCTGGCAATCCTACTACCGC
AACCCTCGGTCCAGTCCGATCATAGACTGGGAATGAACTTCGTATG
Found at i:19796784 original size:158 final size:157
Alignment explanation
Indices: 19796528--19797021 Score: 568
Period size: 158 Copynumber: 3.1 Consensus size: 157
19796518 ACTTCGTATG
* * *
19796528 CTTAGACAGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG-
* * * * * *
19796593 CGACCGAAGAGGCAGAATGCGTAAGCC-AGGGATCGACTTGATCCCCCCTACGTGCTGTCGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
** * * *
19796657 TAATGTCACAACCCTCAGTCCGATCCAAT
129 TGCTGCCACAACCCTCGGTCCGATCCGAT
* * *
19796686 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
19796751 AGGCCGAAGAGGCATAATGAGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTCC
66 -GGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGATCC
* * *
19796816 CGCTGCCACAACCCTCGGTCCGA-CTGGAG
129 TGCTGCCACAACCCTCGGTCCGATC-CGAT
* **
19796845 CTTAGACAT-GGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCACGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * *
19796908 GTCGGCCGGAGAGGCAGAATGCGCAAGCCG-GAGATCGGCCCGGTCCCCCTTGCGTGCTGTCGAT
64 G-CGGCCGAAGAGGCAGAATGCGCAAGCCGAG-GATCGGCCTGGTCCCCCCTGCGTGCTGTCGAT
* *
19796972 CCTGCTGCCGCAACCCTCGGTCC-AGTTCGAT
127 CCTGCTGCCACAACCCTCGGTCCGA-TCCGAT
*
19797003 CATAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
19797022 TTGTATGCTT
Statistics
Matches: 284, Mismatches: 41, Indels: 23
0.82 0.12 0.07
Matches are distributed among these distances:
157 4 0.01
158 148 0.52
159 127 0.45
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
GGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGATCCGAT
Found at i:19797044 original size:26 final size:26
Alignment explanation
Indices: 19797005--19797055 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19796995 AGTTCGATCA
*
19797005 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
*
19797031 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
19797056 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:19798091 original size:158 final size:156
Alignment explanation
Indices: 19797750--19798091 Score: 409
Period size: 158 Copynumber: 2.2 Consensus size: 156
19797740 AACTCCGTAT
* *
19797750 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
19797815 CCAGCTGGAGGCATAATACGCAAGCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTCCCA
66 CCACCGGGAGGCAGAATACGCAAGCGGGGATCAGCCCGGTCCCCCTCTGCGTGATGCCAATCCCA
* * * *
19797880 CTACCACAACCCTCGGTCCAGTTGGG
131 CTACCACAACCCTCAGTCCAATTCGA
* *
19797906 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** *
19797971 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGATGTCAATC
66 -CCACCGG-GAGGCAGAATACGCAAG-CGGGGATCAGCCCGGTCCCCCTCTGCGTGATGCCAATC
** ** *
19798035 CTGCTGTCGCAACCCTCAGTCCAATTCGA
128 CCACTACCACAACCCTCAGTCCAATTCGA
* *
19798064 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19798092 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
156 61 0.39
157 5 0.03
158 70 0.45
159 20 0.13
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCACCGGGAGGCAGAATACGCAAGCGGGGATCAGCCCGGTCCCCCTCTGCGTGATGCCAATCCCA
CTACCACAACCCTCAGTCCAATTCGA
Found at i:19798101 original size:26 final size:26
Alignment explanation
Indices: 19798065--19798116 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19798055 CCAATTCGAT
*
19798065 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19798091 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19798117 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19798432 original size:26 final size:26
Alignment explanation
Indices: 19798403--19798455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19798393 TACTGTCGAT
*
19798403 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
19798429 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
19798455 C
1 C
19798456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:19799508 original size:26 final size:26
Alignment explanation
Indices: 19799467--19799519 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19799457 CTGGTCTGAT
19799467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19799493 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
19799519 C
1 C
19799520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19799622 original size:184 final size:180
Alignment explanation
Indices: 19799308--19799847 Score: 480
Period size: 184 Copynumber: 3.0 Consensus size: 180
19799298 TCCAATTGGG
* * * * *
19799308 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT-GGGCTTGTGGGCGCTCA
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACG-AATCGAGCATGTGGGCGCTCA
* * * * * * * *
19799372 ACCAGTCGA-AAAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCTCCTGCGTGATGTCGAT
64 ACC-GACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGGCCTGATCCC-CCTGCATGCTGTCGAT
**
19799436 CCTGCTGTCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
127 CCTGCTACCGCAACCC-T-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
19799492 GCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAATCCAACGTGTGGGCGCTCAG
1 GCTTAGACTG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCATGTGGGCGCTCAA
* * **
19799557 CCGACCAGAGAGGCAGGATGCGCAAGCTGAGGATCGGCCTGGTCCCCACTGCATGCTACCGATCC
65 CCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGGCCTGATCCCC-CTGCATGCTGTCGATCC
**** *
19799622 TGCTACCGCAACCC--TC-GG--T-A----A-AAAAAGAATGAACTCCATAT
129 TGCTACCGCAACCCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * **
19799663 GCTTGGACTGGGGATGAATTTCGTATGCCTAAGTCAACCCATGAAACGAGCAT-TCGGATGCTCA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCATGT-GGGCGCTCA
* * * * *
19799727 ACCGACCAGAGAGGCAGGATGCGTAATCCGGGGAT-AGCCTGATCCCCCCTGCATGCTGTCAATC
64 ACCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGGCCTGAT-CCCCCTGCATGCTGTCGATC
* *
19799791 TTGCTACCCCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 CTGCTACCGCAACCCT--GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
19799846 GC
1 GC
19799848 CTAAGTCAAC
Statistics
Matches: 282, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
170 33 0.12
171 99 0.35
172 2 0.01
174 2 0.01
175 2 0.01
176 1 0.00
177 2 0.01
178 1 0.00
179 2 0.01
180 2 0.01
182 1 0.00
183 26 0.09
184 109 0.39
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (180 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCATGTGGGCGCTCAAC
CGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGGCCTGATCCCCCTGCATGCTGTCGATCCTG
CTACCGCAACCCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:19800179 original size:26 final size:26
Alignment explanation
Indices: 19800150--19800202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19800140 CCGGTCCGAT
19800150 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
19800176 CTTAGACTAGGGATGAGCTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
19800202 C
1 C
19800203 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:19800534 original size:26 final size:26
Alignment explanation
Indices: 19800505--19800557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19800495 CCGATCCGAT
19800505 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19800531 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19800557 C
1 C
19800558 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19801242 original size:60 final size:60
Alignment explanation
Indices: 19801148--19801264 Score: 207
Period size: 60 Copynumber: 1.9 Consensus size: 60
19801138 GGGATCGATC
*
19801148 CGATCCCCTCTGTGTGCTACCGATCCTACGGTCGCAACCCTCGATCTGATCCGATCTGCT
1 CGATCCCCTCTGTGTGCTACCGATCCTACGGTCGCAACCCTCGATCCGATCCGATCTGCT
* *
19801208 CGATCCCCTCTGTGTGCTACCGATCCTACTGTCGCAACCCTCGGTCCGATCCGATCT
1 CGATCCCCTCTGTGTGCTACCGATCCTACGGTCGCAACCCTCGATCCGATCCGATCT
19801265 TAGACTGGGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.15, C:0.39, G:0.20, T:0.26
Consensus pattern (60 bp):
CGATCCCCTCTGTGTGCTACCGATCCTACGGTCGCAACCCTCGATCCGATCCGATCTGCT
Found at i:19801292 original size:26 final size:26
Alignment explanation
Indices: 19801263--19801315 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19801253 CCGATCCGAT
19801263 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
* *
19801289 CTTAGACTGGAGGTGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
19801315 C
1 C
19801316 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:19801683 original size:26 final size:26
Alignment explanation
Indices: 19801632--19801683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19801622 CCGGTCTGAT
*
19801632 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19801658 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19801684 TGTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19801692 original size:185 final size:184
Alignment explanation
Indices: 19801472--19801834 Score: 462
Period size: 185 Copynumber: 2.0 Consensus size: 184
19801462 ACCGACTGGG
*
19801472 GCTTAGACAAGGAATGAACTCGGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
19801536 ACTGGTC-GAAAAGGTAGAATGCGCAAGCCGGGGATTGGACCGATCCACCCCT-ACGTGCTGTTG
66 ACT-ACCAG-AAAGGTAGAATGCGCAAGCCGGGGATCGGACCGAT-C-CCCCTAACGTGCTGTCG
* *
19801599 ATCCTGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATAT
127 ATCCTGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATAT
* ** * *
19801657 GCTTAGACATGGAATGAACTCCGTATGTGTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
19801722 CCTACCAGAGAGGTAGAATGTGTAAGCCGGGGATCGGCCCGGTCCTCCTAACGTGCTGTCGATCC
66 ACTACCAGAAAGGTAGAATGCGCAAGCCGGGGATCGGACCGATCCCCCTAACGTGCTGTCGATCC
* * * *
19801787 TGCTACCGTAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACT
131 TGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACT
19801835 CTGTATACCT
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 57 0.38
185 88 0.58
186 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
ACTACCAGAAAGGTAGAATGCGCAAGCCGGGGATCGGACCGATCCCCCTAACGTGCTGTCGATCC
TGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATAT
Found at i:19802185 original size:26 final size:26
Alignment explanation
Indices: 19802134--19802186 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19802124 CTGGTCTGGT
*
19802134 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
19802160 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGAATGGGAATGAACTCCATATG
19802186 C
1 C
19802187 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:19803238 original size:26 final size:25
Alignment explanation
Indices: 19803198--19803268 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 25
19803188 TGGTCTAATG
*
19803198 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGG-ATGAACTCCATATGC
*
19803224 TTAGACTGAGGATGAACTCCGTATGC
1 TTAGACTG-GGATGAACTCCATATGC
19803250 TTAGACTGGAGATGAACTC
1 TTAGACTGG-GATGAACTC
19803269 TGTATGCCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
25 1 0.02
26 38 0.93
27 2 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (25 bp):
TTAGACTGGGATGAACTCCATATGC
Found at i:19803470 original size:26 final size:26
Alignment explanation
Indices: 19803432--19803484 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19803422 CCAGTTCGAT
19803432 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19803458 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19803484 C
1 C
19803485 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19803832 original size:159 final size:158
Alignment explanation
Indices: 19803457--19803959 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 158
19803447 AACTCCGTAT
* * * *
19803457 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
* * * * * *
19803522 CCGATCGGAGAGGTATAATGCACGAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGAGCTACCGATCC
** * *
19803587 TGCTACCGCAACCCTCGGTCTGGTCTAA
131 CACTACCACAACCCTCAGTCTGGTCTAA
* * * *
19803615 TCTTAGAC-TGGGAATGAA-TTCTGTATGCCTAAGTCAACCCATGAAA-TGAGCGTTCGGGTGCT
1 GCTTAGACAT-GGAATGAACTTCT-TATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGTGCT
* * * * * *
19803677 GAGCCGGCCAGAGAGGCATAATGCGCAAGTCAGGGATCGACTCGATCCCCCTTTGTGAGCTACCG
63 CAGCCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCC-CTGCGAGCTACCG
* * * **
19803742 GTCCCACTGCCACAACCCTCAGTTTGG-CTGGG
127 ATCCCACTACCACAACCCTCAGTCTGGTCT-AA
* *
19803774 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
* * * * * * * ** *
19803839 TCAACCGGAGAGGCAGAATGCGTAAGCCAGGGATTGACCTGATCCCTACTGCGTGCTACCGATCC
66 CCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGAGCTACCGATCC
** ** *
19803904 TGCTGTCACAACCCTC-GATCCT-GTCTGA
131 CACTACCACAACCCTCAG-T-CTGGTCTAA
* *
19803932 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCTTATGC
19803960 TTAGACTAGG
Statistics
Matches: 273, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 144 0.53
159 118 0.43
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGAGCTACCGATCC
CACTACCACAACCCTCAGTCTGGTCTAA
Found at i:19803977 original size:25 final size:26
Alignment explanation
Indices: 19803933--19803984 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
19803923 CCTGTCTGAT
*
19803933 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
19803959 CTTAGACTAGG-ATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
19803984 C
1 C
19803985 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:19804592 original size:26 final size:26
Alignment explanation
Indices: 19804551--19804603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19804541 CCGGTTAGAT
*
19804551 CTTAGACTGAGAATGAACTCCTTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
19804577 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
19804603 C
1 C
19804604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:19806130 original size:26 final size:26
Alignment explanation
Indices: 19806094--19806146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19806084 CTGGTTCAAT
19806094 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
19806120 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
19806146 C
1 C
19806147 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:19806333 original size:26 final size:26
Alignment explanation
Indices: 19806302--19806354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19806292 CTGGTCTGAT
*
19806302 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
19806328 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19806354 C
1 C
19806355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19806760 original size:155 final size:159
Alignment explanation
Indices: 19806391--19806765 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 159
19806381 CGGGGACCGG
* * ** ** *
19806391 GTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTGCGT
1 GTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTGCCT
* * * * * * * *
19806456 ATGCCTAAGTCAACCCACGAAATGTGCCTTCGGGCACTGAGTCGACCGGAGAGGCATAATTCGCA
66 ATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGTCGACCGGAGAGGCATAATGCGCA
** *
19806521 AGCTGGGGATCAGTCCGATCCCCCTCTGC
131 AGCTAAGGATCAGCCCGATCCCCCTCTGC
* * ** ** *
19806550 GTGCTGCCGATCCCGCTACCATAACCCTCGATCCGGTTGGGGCTTAGACAT-GGAATGAACTTCC
1 GTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTGCC
*
19806614 TATGCCTAAGCCAA-CCACAAAACGGGCATGCGGGCACTCAG-CTGGCCGGAGAGGCA-AATGCG
65 TATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGTC-GACCGGAGAGGCATAATGCG
19806676 CAAG-TCAAGGATCAGCCCGAT-CCCC-CTGC
129 CAAGCT-AAGGATCAGCCCGATCCCCCTCTGC
* * * ** * *
19806705 GTGCTGTCGATCCTGTTGTCACAACCTTCGGTCCGGTCCAATCTTAGACTGGGAATGAACT
1 GTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
19806766 CCGTATGTGT
Statistics
Matches: 175, Mismatches: 37, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
154 1 0.01
155 50 0.29
156 5 0.03
157 22 0.13
158 33 0.19
159 63 0.36
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GTGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTGCCT
ATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGTCGACCGGAGAGGCATAATGCGCA
AGCTAAGGATCAGCCCGATCCCCCTCTGC
Found at i:19806778 original size:26 final size:26
Alignment explanation
Indices: 19806749--19806798 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
19806739 GGTCCAATCT
19806749 TAGACT-GGGAATGAACTCCGTATGTG
1 TAGACTAGGG-ATGAACTCCGTATGTG
19806775 TAGACTAGGGATGAACTCCGTATG
1 TAGACTAGGGATGAACTCCGTATG
19806799 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGTG
Found at i:19806981 original size:26 final size:26
Alignment explanation
Indices: 19806943--19806995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19806933 CCGGTCCGAT
*
19806943 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19806969 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19806995 C
1 C
19806996 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19807088 original size:196 final size:196
Alignment explanation
Indices: 19806736--19807099 Score: 495
Period size: 196 Copynumber: 1.9 Consensus size: 196
19806726 CAACCTTCGG
*
19806736 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGTGTAGACTAGGGATGAACTCCGTATGCC
1 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGTGTAGACTAGGAATGAACTCCGTATGCC
* * * *
19806801 TAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCAGTCGGAAAGGCATAATGCGAAAGCTG
66 TAAGCCAACCCACGAAACAAGCATGCGGGCACTCAACCAGTCGGAAAGGCAGAATGCGAAAGCCG
*
19806866 GGGATCGACTCAGTCCCCCTTGCATGCTATCGATCCTGTTGTTGGTCCTGCTGTCGCAACCCTTG
131 GGGATCGACTCAGTCCCCCCTGCATGCTATCGATCCTGTTGTTGGTCCTGCTGTCGCAACCCTTG
19806931 A
196 A
* *
19806932 TCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT-TAGAC-ATGGAATGAACTCCGTATG
1 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG-TGTAGACTA-GGAATGAACTCCGTATG
* ** * * *
19806995 CCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAATC-GATC-GAAGAGGTAGAATGCGCAA
64 CCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAACCAG-TCGGAA-AGGCAGAATGCGAAA
* * *
19807058 GCCGGGGATCG-GTCTGATCCCCCCTGCATGCTGTCGATCCTG
127 GCCGGGGATCGACTCAG-TCCCCCCTGCATGCTATCGATCCTG
19807100 CTACTGCAAC
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
195 8 0.05
196 137 0.94
197 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGTGTAGACTAGGAATGAACTCCGTATGCC
TAAGCCAACCCACGAAACAAGCATGCGGGCACTCAACCAGTCGGAAAGGCAGAATGCGAAAGCCG
GGGATCGACTCAGTCCCCCCTGCATGCTATCGATCCTGTTGTTGGTCCTGCTGTCGCAACCCTTG
A
Found at i:19807332 original size:159 final size:158
Alignment explanation
Indices: 19806968--19807351 Score: 412
Period size: 158 Copynumber: 2.4 Consensus size: 158
19806958 AACTTCGTAT
** * *
19806968 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
* * * * * * * *
19807033 TCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCCCTGCATGCTGTCGATCC
66 CCGACCGAAGAAGCAGAATGCGCAAACCGAGGATCGGTCCGATCCCCCCTGCATCCTGTCGATCC
* ** *
19807098 TGCTACTGCAACCCTCGATCCGATCCAA
131 CGCTACCACAACCCTCGATCCAATCCAA
* * ** * * *
19807126 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCA
* * *
19807190 GCCGACCGAAGAAGCATAATGCGCAAACCGAGGATCGGTCCGATCCCCCTTTGCGTCCTGTCGAT
65 GCCGACCGAAGAAGCAGAATGCGCAAACCGAGGATCGGTCCGATCCCCC-CTGCATCCTGTCGAT
* * * ***
19807255 CCCGTTTCCACAACCCTCGATCTAA-CTGGG
129 CCCGCTACCACAACCCTCGATCCAATC-CAA
* * *
19807285 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
19807350 CC
66 CC
19807352 AGTCAGAGAG
Statistics
Matches: 181, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.01
158 94 0.52
159 85 0.47
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
CCGACCGAAGAAGCAGAATGCGCAAACCGAGGATCGGTCCGATCCCCCCTGCATCCTGTCGATCC
CGCTACCACAACCCTCGATCCAATCCAA
Found at i:19807370 original size:159 final size:158
Alignment explanation
Indices: 19806968--19807398 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 158
19806958 AACTTCGTAT
** * *
19806968 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
* * * * *
19807033 TCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGTCTGATCCCCC-CTGCATGCTGTCGATC
66 CCG-TCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGTCCGATCCCCCTCTGCATCCTGTCGATC
* ** *
19807097 CTGCTACTGCAACCCTCGATCCGATCCAA
130 CCGCTACCACAACCCTCGATCCAATCCAA
* * ** * * *
19807126 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCA
* * * * * *
19807190 GCCGACCGAAGAAGCATAATGCGCAAACCGAGGATCGGTCCGATCCCCCTTTGCGTCCTGTCGAT
65 GCCG-TCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGTCCGATCCCCCTCTGCATCCTGTCGAT
* * * ***
19807255 CCCGTTTCCACAACCCTCGATCTAA-CTGGG
129 CCCGCTACCACAACCCTCGATCCAATC-CAA
* * *
19807285 GCTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
* * *
19807350 CCAGTC-AGAGAGGCAGAATGCACAAGCCAAGGATC-ATCCCGATCCCCCT
66 CC-GTCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGGT-CCGATCCCCCT
19807399 ACGTGCTATC
Statistics
Matches: 218, Mismatches: 48, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.44
159 119 0.55
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
CCGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGTCCGATCCCCCTCTGCATCCTGTCGATCC
CGCTACCACAACCCTCGATCCAATCCAA
Found at i:19807479 original size:26 final size:26
Alignment explanation
Indices: 19807443--19807495 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19807433 TCGATTCGAT
19807443 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
* *
19807469 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
19807495 C
1 C
19807496 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:19807901 original size:26 final size:26
Alignment explanation
Indices: 19807863--19807915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19807853 CGCTCAAACT
19807863 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
19807889 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
19807915 C
1 C
19807916 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19808315 original size:13 final size:13
Alignment explanation
Indices: 19808297--19808322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19808287 GACGCTCAGT
19808297 CAGTCGGAGAGGC
1 CAGTCGGAGAGGC
19808310 CAGTCGGAGAGGC
1 CAGTCGGAGAGGC
19808323 AGAATGCGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CAGTCGGAGAGGC
Found at i:19808454 original size:26 final size:26
Alignment explanation
Indices: 19808416--19808466 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
19808406 CCGATCTGAT
*
19808416 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
19808442 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
19808467 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:19808787 original size:26 final size:26
Alignment explanation
Indices: 19808758--19808810 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19808748 CCGGTCCAAT
19808758 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
19808784 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
19808810 C
1 C
19808811 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:19809657 original size:26 final size:26
Alignment explanation
Indices: 19809621--19809673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19809611 TTGATCCGAT
*
19809621 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19809647 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19809673 C
1 C
19809674 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19810963 original size:171 final size:170
Alignment explanation
Indices: 19810692--19811051 Score: 415
Period size: 171 Copynumber: 2.1 Consensus size: 170
19810682 CCGGTATGAT
* * * * * *
19810692 CTTAGACTAGGAATGAACTCTGTATGCCCAAGTCAACCCATAAAATGAGCGTGCGAGCGCTGAGC
1 CTTAGACTAGGAATAAACTCCGTATGCCCAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAGC
* * *
19810757 CGATCGAAGAGGCATAATGAGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCT-GCTGATC
66 CGATCGAAGAGGAAGAATGAGCAAGTCGAGGATCGACCCGGTCCCCC-CTGCGTGCTATC-GATC
* *
19810821 CCGCTGCTGATCCTGCTGCCACAACCATCGGTCCGGCTGCTG
129 CCGCTACTGATCCTGCAGCCACAACCATCGGTCCGGCTGCTG
* *
19810863 CTTAGAC-ATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAG
1 CTTAGACTA-GGAATAAACTCCGTATGCCCAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAG
* * *
19810927 CCGATCGGAGAGGAAGAATGCA-CAAG-CTGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGAT
65 CCGATCGAAGAGGAAGAATG-AGCAAGTC-GAGGATCGACCCGGTCCCCCCTGCGTGCTATCGAT
* * * * * *
19810990 CCTGCTACTGGTCCTGCAGCCGCAACCCTCGGTCCAGTCTGAT-
128 CCCGCTACTGATCCTGCAGCCACAACCATCGGTCC-GGCTGCTG
* *
19811033 CTTAGACTGGGAATGAACT
1 CTTAGACTAGGAATAAACT
19811052 TCATATGCTT
Statistics
Matches: 159, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
170 58 0.36
171 100 0.63
172 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (170 bp):
CTTAGACTAGGAATAAACTCCGTATGCCCAAGCCAACCCATAAAACGAGCGTACGAGCGCTCAGC
CGATCGAAGAGGAAGAATGAGCAAGTCGAGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCC
GCTACTGATCCTGCAGCCACAACCATCGGTCCGGCTGCTG
Found at i:19811416 original size:355 final size:351
Alignment explanation
Indices: 19810863--19811628 Score: 923
Period size: 354 Copynumber: 2.2 Consensus size: 351
19810853 CCGGCTGCTG
* * * ** *
19810863 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * *
19810927 CCGATCGGAGAGGAAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCC
65 CCGATCGGAGAGGAAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGTATGCTATCGATCC
* * *
19810992 TGCTACTGGTCCTGCAGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCATA
130 TGCTACTGGTCCTGCAGCCGCAACCCTCAGCCCAGTCCGATCTTAGACTGGGAATGAACTTCATA
* * ** * **
19811057 TGCTTAGGCATGGAATAAACTCTGTATGCCTCAGCCAACCCATGAAACGAGCATGTGGGCACTCA
195 TGCTTAGACATGGAATAAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGCACTCA
* *
19811122 GTCGGTCGGAGAGGCAGATTATGC-AAGCCAGGGACTGGCCCGGTCCCCCCCGCGTGCTACCGAT
260 GTCGG-CCGAGAGGCAGA--ATGCGAAGCCAGGGACTAGCCCGGTCCCCCCCGCGTGCTACCGAT
* * * * *
19811186 CTTGCTGTCGTAACCCTCAGTCTGGTCCGAT
322 CCTGCTGCCGCAA-CCTCAGCCCGGTCCGAT
*
19811217 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGC
* * * * * *
19811282 CGATCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCCTGAT-CCCCCTTTACATGCTGTCGATC
66 CGATCGGAGAGGAAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGT--ATGCTATCGATC
* *
19811346 CTGCT-GTCGGTCCTGCTGCCGCAACCCTCAGCCC-GATCCGATCTTAGACTGGGAATGAAC-TC
129 CTGCTACT-GGTCCTGCAGCCGCAACCCTCAGCCCAG-TCCGATCTTAGACTGGGAATGAACTTC
* * * * * *
19811408 TGTATGCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCTACGAAATGAGCGTACGGGCG
192 -ATATGCTTAGACATGGAATAAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGCA
* * * **
19811473 CTCAGTCGGCCGAGAGGCAGAATGCGTAAGTCGGGGACTAGCCCGGTCCCCCCTGCGTGCTGTCG
256 CTCAGTCGGCCGAGAGGCAGAATGCG-AAGCCAGGGACTAGCCCGGTCCCCCCCGCGTGCTACCG
*
19811538 ATCCTGCTGCCGCAACCTCAGCCCGGTCTGAT
320 ATCCTGCTGCCGCAACCTCAGCCCGGTCCGAT
* * *
19811570 CTTAGACTGGAAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCG
19811629 TTGAGCCGGC
Statistics
Matches: 351, Mismatches: 53, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
352 4 0.01
353 77 0.22
354 149 0.42
355 121 0.34
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (351 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGAAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTGTATGCTATCGATCCT
GCTACTGGTCCTGCAGCCGCAACCCTCAGCCCAGTCCGATCTTAGACTGGGAATGAACTTCATAT
GCTTAGACATGGAATAAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
TCGGCCGAGAGGCAGAATGCGAAGCCAGGGACTAGCCCGGTCCCCCCCGCGTGCTACCGATCCTG
CTGCCGCAACCTCAGCCCGGTCCGAT
Found at i:19811426 original size:26 final size:26
Alignment explanation
Indices: 19811388--19811440 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19811378 CCGATCCGAT
*
19811388 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19811414 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
19811440 C
1 C
19811441 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19811804 original size:158 final size:156
Alignment explanation
Indices: 19811413--19811912 Score: 381
Period size: 158 Copynumber: 3.2 Consensus size: 156
19811403 AACTCTGTAT
* * *
19811413 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCTACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
19811478 TCGGCCGAGAGGCAGAATGCGTAAGTCGGGGACTAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CCGGCGGAGAGGCAGAATACGTAAGTCGGAGACGAGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* *
19811543 GCTGCCGCAACCTCAGCCCGGTCTGA
131 GCTGCCACAACCTCAGCCCGGACTGA
* * * * * * * *
19811569 TCTTAGAC-TGGAAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * **
19811633 GCCGGCCGAAGAGGCATAATACGTAAGAT-GGAGACCGA-CCCGGTCCCATTCTGCGTGCTGCC-
65 GCCGG-CGGAGAGGCAGAATACGTAAG-TCGGAGA-CGAGCCCGGTCCC-CCCTGCGTGCTGCCG
* * *
19811695 AGTGCTGCTGCCACAACCCTC-GATCC-GACTGG
126 A-TCCTGCTGCCACAA-CCTCAG-CCCGGACTGA
* * * * *
19811727 GGTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACGGCCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * ** * *
19811792 CCGGTTGGAGAGGTAGAATGCGCAAG-CCGAGGATCG-GCTTGGTCCCCCCTGCGTGCAGTCGAT
66 CCGG-CGGAGAGGCAGAATACGTAAGTCGGA-GA-CGAGCCCGGTCCCCCCTGCGTGCTGCCGAT
* * * * *
19811855 CCTGTTGCCGCAACCCTC-GATCCGGTCCGA
128 CCTGCTGCCACAA-CCTCAG-CCCGGACTGA
* *
19811885 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
19811913 TTCGACTGGG
Statistics
Matches: 265, Mismatches: 64, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 3 0.01
156 53 0.20
157 65 0.25
158 135 0.51
159 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCGGAGAGGCAGAATACGTAAGTCGGAGACGAGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCACAACCTCAGCCCGGACTGA
Found at i:19811926 original size:26 final size:26
Alignment explanation
Indices: 19811886--19811964 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
19811876 CCGGTCCGAT
19811886 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
19811912 CTTCGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* * *
19811938 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
19811964 C
1 C
19811965 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.04
26 43 0.93
27 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19812222 original size:11 final size:13
Alignment explanation
Indices: 19812204--19812235 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
19812194 TTGCGGTTTG
19812204 AGATTTTTTA-AA
1 AGATTTTTTAGAA
19812216 A-ATTTTTTAGAA
1 AGATTTTTTAGAA
19812228 AGATTTTT
1 AGATTTTT
19812236 GTTCCTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 4 0.22
13 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (13 bp):
AGATTTTTTAGAA
Found at i:19813309 original size:159 final size:157
Alignment explanation
Indices: 19813007--19813508 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 157
19812997 GAACTCCTAT
* * *
19813007 TCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 TCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
19813072 TCAATCGGAGAGGCAGAATGCACAAGCTGGGGAT-AAGCCCGATCCCCCCCTGCATGCTGTCGAT
66 CCGATCGGAAAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGGT-CCCCCCTGCGTGCTGTCGAT
*
19813136 CCTGCTATCGCAACCCTCGGTCCGGTCCGA
129 CCTGCTACCGCAACCCTCGGTCC-GTCCGA
* * * * * *
19813166 TCTTAGAC-TAGGAATGAACTACGTTTGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGTTGA
1 TCTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
19813230 GCCGACCGGAAAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGTTGCCGGT
65 GCCGATCGGAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * * * * * *
19813295 CCCGTTGCCACAACCCTCTGTTCGACTGGG
129 CCTGCTACCGCAACCCTCGGTCCGTC-CGA
* * * * * *
19813325 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 TCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
19813390 CCGGTCAGAAAGGCAGAATGCGCAAG-TCGGGGATTCG-CCCGGTCCCCCCTGCGTGCTGTCGAT
66 CCGATCGGAAAGGCAGAATGCGCAAGCT-GGGGA-TCGACCCGGTCCCCCCTGCGTGCTGTCGAT
* **
19813453 CCTGCTACCGCAACCCTCGATCCTGTCTAA
129 CCTGCTACCGCAACCCTCGGTCC-GTCCGA
* *
19813483 TCTTAGACTTGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTACGTAT
19813509 ACTTAGACTA
Statistics
Matches: 270, Mismatches: 65, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
158 59 0.22
159 206 0.76
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGATCGGAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCGGTCCGTCCGA
Found at i:19813525 original size:26 final size:26
Alignment explanation
Indices: 19813484--19813533 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
19813474 CCTGTCTAAT
*
19813484 CTTAGACTTGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
*
19813510 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
19813534 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:19822278 original size:158 final size:157
Alignment explanation
Indices: 19822040--19822338 Score: 343
Period size: 158 Copynumber: 1.9 Consensus size: 157
19822030 CTTAGACTGG
* * * * * *
19822040 GAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGTGTTCGGGCATTGAGCCGACCGAAGA
1 GAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTTCGGGCACTCAACCGACCGAAGA
* * * * *
19822105 GGCATAATACACAAGCCGAGGAT-CGACCCAGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCAT
66 GGCAGAATACACAAGCCGAGGATCCG-CCCAGTCCCCC-CTACGTGCTGCCGATCCTACTGCCAT
19822169 AACCCTCGGTCTGACTGGGGCTTAGTCAT
129 AACCCTCGGTCTGACTGGGGCTTAGTCAT
** *
19822198 GAATGAACTCCCTATGACTAAGCCAACCCACGAAACGGACGTG-T-GGGCACTCAACCGATTGGA
1 GAATGAACTCCCTATGACTAAGCCAACCCACGAAAC-GA-GTGTTCGGGCACTCAACCGACCGAA
* * * * * * **
19822261 GAGGCAGAATGCGCAAGCTGGGGATCCGTCCGGTCCCCCCTACGTGCTGCCGATCCTACTGCTGT
64 GAGGCAGAATACACAAGCCGAGGATCCGCCCAGTCCCCCCTACGTGCTGCCGATCCTACTGCCAT
19822326 AACCCTCGGTCTG
129 AACCCTCGGTCTG
19822339 GTCTGATATT
Statistics
Matches: 116, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 33 0.28
158 75 0.65
159 5 0.04
160 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCCTATGACTAAGCCAACCCACGAAACGAGTGTTCGGGCACTCAACCGACCGAAGA
GGCAGAATACACAAGCCGAGGATCCGCCCAGTCCCCCCTACGTGCTGCCGATCCTACTGCCATAA
CCCTCGGTCTGACTGGGGCTTAGTCAT
Found at i:19822360 original size:158 final size:157
Alignment explanation
Indices: 19821871--19822371 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 157
19821861 ACTCCATATG
** * * * ** *
19821871 CTTAGACAT-GGAATGAACTTTGTATGCCTCAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGA-CGTGTGGGCACTCAA
* * * *
19821935 CCGACTGGAGAGGCAGAATGCATAAG-TCGGGGA-CCAGCCCGATCCTCTCCTGCGTGCTGTCAA
64 CCGACTGGAGAGGCAGAATGCACAAGCT-GGGGATCC-GCCCGGTCC-CCCCTGCGTGCTGTCGA
* * *
19821998 TCCTGCTGCTGCAACCCTCGGTCCGGTTTGAT
126 TCCTGCTGCTGTAACCCTCGGTCTGGTCTGAT
* * * * *
19822030 CTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGA-GTGTTCGGGCATTGAG
1 CTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGACGTG-T-GGGCACTCAA
* * * * * * * *
19822094 CCGACCGAAGAGGCATAATACACAAGCCGAGGAT-CGACCCAGTCCCCCTCTGCGTGCTGTCGGT
64 CCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCCG-CCCGGTCCCCC-CTGCGTGCTGTCGAT
** * **
19822158 CCTGCTGCCATAACCCTCGGTCT-GACTGGGG
127 CCTGCTGCTGTAACCCTCGGTCTGGTCT-GAT
* *
19822189 CTTAGTCAT--GAATGAACTCCCTATGACTAAGCCAACCCACGAAACGGACGTGTGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGACTAAGCCAACCCACGAAAC-GACGTGTGGGCACTCAA
* * * * *
19822252 CCGATTGGAGAGGCAGAATGCGCAAGCTGGGGATCCGTCCGGTCCCCCCTACGTGCTGCCGATCC
64 CCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCCGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
19822317 TACTGCTGTAACCCTCGGTCTGGTCTGAT
129 TGCTGCTGTAACCCTCGGTCTGGTCTGAT
* *
19822346 ATTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19822372 CTTAGACTGG
Statistics
Matches: 266, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 40 0.15
158 98 0.37
159 123 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGACGTGTGGGCACTCAACC
GACTGGAGAGGCAGAATGCACAAGCTGGGGATCCGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCTGTAACCCTCGGTCTGGTCTGAT
Found at i:19822397 original size:26 final size:26
Alignment explanation
Indices: 19822347--19822398 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
19822337 TGGTCTGATA
* * *
19822347 TTAGACTGGGAATGAAGTCCGTATGC
1 TTAGACTGGGAATAAACTCCATATGC
*
19822373 TTAGACTGGGGATAAACTCCATATGC
1 TTAGACTGGGAATAAACTCCATATGC
19822399 CTAAGTCAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGC
Found at i:19823176 original size:159 final size:159
Alignment explanation
Indices: 19822730--19823224 Score: 582
Period size: 159 Copynumber: 3.1 Consensus size: 159
19822720 GCTTAGACAT
* * * * * * * * *
19822730 GGAATGAACTTCGTATGCCTAAGCCAACGCACGAAATGAGAGTACGGGCACTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGTCGGCCGGAG
* * * * * *
19822795 AGGTAGAATGCGTAAACCGAGGA-TCAGCCCGGTCCCCCTCTGTGTGCTGTCAATCTTGCTACCG
66 AGGCATAATGCATAAGCCGAGGATTGA-CCCGGTCCCCCTCTGTGTGCTGTCGATCTTGCTACCG
* * *
19822859 CAACTCTCAGTTCGGTTCGATCTTTGATTG
130 TAACTCTCGGTTCGGTTCGATCTTAGATTG
* * *
19822889 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGTCAGCCGGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGTCGGCCGGAG
* * * * *
19822954 AGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTTTGTGTGCTATCGATCTTACTACCGT
66 AGGCATAATGCATAAGCCGAGGATTGACCCGGTCCCCCTCTGTGTGCTGTCGATCTTGCTACCGT
19823019 AACTCTCGGTTCGGTTCGATCTTAGATTG
131 AACTCTCGGTTCGGTTCGATCTTAGATTG
*
19823048 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGCATTGAGTCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGTCGGCCGGAG
** * ** * * * *
19823113 AGGCATAATGCATAAGTTGGGGATTGACCCGGTCCCCCTCTACGTGTTGTCGGTCTCGTTACCGT
66 AGGCATAATGCATAAGCCGAGGATTGACCCGGTCCCCCTCTGTGTGCTGTCGATCTTGCTACCGT
* * *
19823178 AACGTC-CGG-TCCGATCTGATCTTAAATTG
131 AAC-TCTCGGTTCGGTTC-GATCTTAGATTG
*
19823207 GGAATGAACTTCGTATGC
1 GGAATGAACTCCGTATGC
19823225 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 48, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
158 5 0.02
159 277 0.97
160 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCATTGAGTCGGCCGGAG
AGGCATAATGCATAAGCCGAGGATTGACCCGGTCCCCCTCTGTGTGCTGTCGATCTTGCTACCGT
AACTCTCGGTTCGGTTCGATCTTAGATTG
Found at i:19823616 original size:26 final size:26
Alignment explanation
Indices: 19823578--19823630 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19823568 TCGGTCTGAT
19823578 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
19823604 CTTAGAAAT-GGAATGAACTCCGTATG
1 CTTAG-AATGGGAATGAACTCCGTATG
19823630 C
1 C
19823631 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:19824016 original size:159 final size:157
Alignment explanation
Indices: 19823603--19824039 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 157
19823593 AACTCCGTAT
* * *
19823603 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTA-AAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
19823668 CCGGTCGGAGAGGCAAAATGCGTAAGCC-AGGGACCGACCCGATCCCCCCTGCGTGCTGTCCATC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCCTGCGTGATGTCCATC
*** * *
19823732 CTGTTGCCGCAACCCTCGGTTTGATCCGA
129 CCACTGCCACAACCCTCGGTCTGATCCGA
* * * * * * *
19823761 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTGAG
1 GCTTAAAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *** * ** * * *
19823826 TCGGTCGGAGAGGTGTAATACGCAAATCGAGGATTGGCCCGGTCCCCCTCTGCGTGATGTCGATC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTGATGTCCATC
* * ** *
19823891 CCACTGCTACAACCCTTGGTCTGATTGGG
129 CCACTGCCACAACCCTCGGTCTGATCCGA
* * **
19823920 GCTTAAACATGGAACGAACTCCCTATGGTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAAA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
19823985 CCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTG
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTG
19824040 CTACTGATCC
Statistics
Matches: 220, Mismatches: 55, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
157 2 0.01
158 93 0.42
159 124 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGATGTCCATCCC
ACTGCCACAACCCTCGGTCTGATCCGA
Found at i:19824385 original size:196 final size:196
Alignment explanation
Indices: 19824047--19824399 Score: 476
Period size: 196 Copynumber: 1.8 Consensus size: 196
19824037 GTGCTACTGA
* * *
19824047 TCCTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGATTGGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGAA
* * ** *
19824112 TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTCAGTCGACCGG
66 TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGACCGA
*
19824177 AGAGGTAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCCTGTTACTA
131 AGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCCTGTTACTA
19824242 G
196 G
* * ** *
19824243 TCCTGCT-CCTGCAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGATCTCCATATGCTTAGT
1 TCCTGCTGCC-GCAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAG-
* * * * * *
19824307 AAT-GGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTGCAGTCGCTTAGTTGGCC
64 AATAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGACC
* *
19824371 GAAGAGGCAGAATGCGCAAGCCGGGGATC
129 GAAGAGGCAGAATGCACAAGCCGAGGATC
19824400 AGCCTGGTCC
Statistics
Matches: 133, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
195 2 0.02
196 129 0.97
197 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (196 bp):
TCCTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGAA
TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCGACCGA
AGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCCTGTTACTA
G
Found at i:19824573 original size:697 final size:694
Alignment explanation
Indices: 19823407--19824899 Score: 1731
Period size: 697 Copynumber: 2.1 Consensus size: 694
19823397 TCTGGCTGGG
* * * * ** **
19823407 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGCACATGCGCTCA
1 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGC-CTCA
* * * * *
19823471 GTTGGCCGGAGAGGCAAAATACACAAGCCGTGGATCGACTCAGTCCCCCCTATGTGCTGTCGATC
64 GTCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACTCAGTCCCCCCTATGTGCTGTCGATC
* * * * * * *
19823536 CTGCTGCTGGTCCTACTACCGCTACCCTTGGTTCGGTCTGATCTTAGAATGGGAATGAACTCCGT
129 CTGCTACTAGTCCTACTACCGCAACCCTCGGTTCGATCTGATCTTAGAATAGGAATGAACTCCAT
* **
19823601 ATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGTGGGCGCTC
194 ATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * * *
19823666 AACCGGTCGGAGAGGCAAAATGCGTAAGCCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCCAT
259 AACCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGACAGACCCGATCCCCCCTGCATGCTGTCCAT
** * ** ** * * *
19823731 CCTGTTGCCGCAACCCTCGGTTTGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
324 CCTACTACCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
* * * ** * * *
19823796 AACCCACAAAACGAGTGTGCGGGCGCTGAGTCGGTCGGAGAGGTGTAATACGCAAATCGAGGATT
389 AACCCACAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATACACAAACCGAGGATC
* * * * * * *
19823861 GGCCCGGTCCCCCTCTGCGTGATGTCGATCCCACTGCTACAACCCTTGGTCTGATTGGGGCTTAA
454 GGACCGATCCCCCTCTGCGTGATGTAGATCCCACTGCCACAACCCTCGATC-GACTGGGG-TTAA
* ** * * * **
19823926 ACATGGAACGAACTCCCTATGGTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
517 ACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACC
* * * *
19823991 GGAGAGGCAAAATGTGCAAGCC-GAGGATCGGCCCGATCCCCCCTGCGTGCTACTGATCCTGCTG
582 GGAGAGACAAAATGTGCAAGCCAG-GGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTA
* *
19824055 CCGCAACCCTCGGTCCAATCCAATCTTAGATTGGGAATGAACTCCATAT
646 CCGCAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATAT
*
19824104 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGC-CTCAG
* * *
19824169 TCGACCGGAGAGGTAGAATGCACAAGCCGAGGATCGAC-CTGATCCCCCCTGTGTGCTGTCGATC
65 TCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACTCAG-TCCCCCCTATGTGCTGTCGATC
* * * *
19824233 CTGTTACTAGTCCTGCT-CCTGCAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGATCTCCA
129 CTGCTACTAGTCCTACTACC-GCAACCCTCGGTTCGATCTGATCTTAGAATAGGAATGAACTCCA
* * * * *
19824297 TATGCTTAGTAATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTGCAGTCGCT
193 TATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT
* *** * * * * ** * *
19824362 TAGTTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCTGGTCCCTTCTGCATGCTTTCG
258 CAACCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGA-CAGACCCGATCCCCCCTGCATGCTGTCC
* * *
19824426 ATCCTACTATCGCAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAG
322 ATCCTACTACCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAG
** * * *
19824491 TCAACCCACGGAATGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATGCACAAACCGGGGA
387 TCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATACACAAACCGAGGA
* * * * * *
19824556 TCGGATCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCCTCGATCGGCTGGGGTTAG
452 TCGGACCGATCCCCCTCTGCGTGATGTAGATCCCACTGCCACAACCCTCGATCGACTGGGGTTAA
* * * *
19824621 ACATGGAATGAACTACCTATGCCTAAGCCAACCGATGAAACGGGCGTACGGGCACTCAACCGACC
517 ACATGGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACC
* * * *
19824686 GGAGAGACAGAATGTGCAAGCCAGGGATTGGCCCGGTCCCTCCTGCGTGCTACCGATCCTACTAC
582 GGAGAGACAAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTAC
* * *
19824751 CGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAGCTCCGTAT
647 CGCAACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATAT
* *
19824799 GCTTAGACT-GGTGATGAACTCCGTATGCCTAAGTCAACCCATGACATGAGCGTGCGGTG-CTTA
1 GCTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGG-GCCTCA
* * * *
19824862 GTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
64 GTCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
19824900 ACGTGTGGTA
Statistics
Matches: 663, Mismatches: 126, Indels: 17
0.82 0.16 0.02
Matches are distributed among these distances:
694 38 0.06
695 206 0.31
696 12 0.02
697 404 0.61
698 3 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (694 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCCTCAGT
CGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACTCAGTCCCCCCTATGTGCTGTCGATCCT
GCTACTAGTCCTACTACCGCAACCCTCGGTTCGATCTGATCTTAGAATAGGAATGAACTCCATAT
GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGACAGACCCGATCCCCCCTGCATGCTGTCCATCC
TACTACCGCAACCCTCAATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCACAAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGAGGCATAATACACAAACCGAGGATCGG
ACCGATCCCCCTCTGCGTGATGTAGATCCCACTGCCACAACCCTCGATCGACTGGGGTTAAACAT
GGAACGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGACCGGAG
AGACAAAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTACCGCA
ACCCTCGGTCCAATCCAATCTTAGACTAGGAATGAACTCCATAT
Found at i:19824803 original size:26 final size:26
Alignment explanation
Indices: 19824774--19824826 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19824764 CCAATCCGAT
*
19824774 CTTAGACTAGG-AATGAGCTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
*
19824800 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
19824826 C
1 C
19824827 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:19825571 original size:158 final size:155
Alignment explanation
Indices: 19825165--19825591 Score: 449
Period size: 158 Copynumber: 2.7 Consensus size: 155
19825155 CCGACCAAAG
* * * * * *
19825165 AGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCTCCTACGTGCTGTCGATCCTGCTGCTGCA
1 AGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTTCCGTA
* *
19825230 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
66 ACCCTCGATC-GGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
* * * ** *
19825295 GAGCGTTCAGGTGTTGAGCCAGTTGAG
129 GAGCGTACAGGTGCTCAGCCAGCCGAA
* * * *
19825322 AGGCATAATGTGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTTCCAT
1 AGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTTCCGT
* * ** * *
19825387 AACCCTCGATCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
65 AACCCTCGATCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * *
19825452 TGGGTGTACGGGTGCTCAGCCGGCCGAAA
128 CGAGCGTACAGGTGCTCAGCCAGCCG-AA
* ** * * * *
19825481 AGGCAGAATGCGCAAGTTAGGGATCGGCCCGGTCCCCCCTGCTTGCTGTCGATCCTGCTTTCGTA
1 AGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTTCCGTA
*
19825546 ACCCTCAGTTCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGC
66 ACCCTC-GATCGGTCTGATCTTAGACTG-GAATGAACTCCGTATGC
19825592 TTAGATTGGG
Statistics
Matches: 217, Mismatches: 47, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 40 0.18
158 137 0.63
159 40 0.18
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (155 bp):
AGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTTCCGTA
ACCCTCGATCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
GCGTACAGGTGCTCAGCCAGCCGAA
Found at i:19826660 original size:159 final size:157
Alignment explanation
Indices: 19826276--19826690 Score: 445
Period size: 159 Copynumber: 2.6 Consensus size: 157
19826266 CGCTCAAAAT
* *
19826276 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCGGC
* * * * * *
19826341 CGGTCGGAGAGGCGGAATACGCAAGCCGGGGATCGGGCCGATCCCCCCTACGTGCTATCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGATCCCCCCTACGTGCTATCGATCCC
* ** * * *
19826406 GCTGCCGCAACCCTCGGTCCAATTCGAT
130 GCTACAACAACCCTCAGTCCAACTCGAG
* *
19826434 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCT-GAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCG-G
* * * * * * * *
19826498 CCGACCGGAGAGGCATAATGTGCAAGCTGGGGATCGATCCGATCCCCCTTTGCGTGCTGTCGGTC
64 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGATCCCCC-CTACGTGCTATCGATC
* * * *
19826563 CCGTTACAACAACCCTCAGTCCGACTGGGG
128 CCGCTACAACAACCCTCAGTCCAACTCGAG
* * * * * *
19826593 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGAGCGTGCGAGCGCTCGGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCGGC
* * *
19826658 CGATCGGAAAGGCAGAATGCGAAAGTTGGGGAT
65 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGAT
19826691 TGACCCTGTC
Statistics
Matches: 210, Mismatches: 42, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
158 95 0.45
159 113 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCGGCC
GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAGCCGATCCCCCCTACGTGCTATCGATCCCG
CTACAACAACCCTCAGTCCAACTCGAG
Found at i:19827316 original size:188 final size:184
Alignment explanation
Indices: 19826954--19827319 Score: 436
Period size: 188 Copynumber: 2.0 Consensus size: 184
19826944 GGGCTTAGAC
* * *
19826954 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGTCGG
1 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAG
* * * * * * **
19827019 AGAGGTAGAATGCCCAAGCTGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCG
66 AGAGGCAGAATGACCAAGCTAAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCG
* * * *
19827084 CAACCTTCAGTTTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTCGAT
131 CAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTCGAT
* * *
19827138 ATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTCCGGGCGTTCAGCCG
1 ATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGA----GCGTACGGGCGCTCAGCCG
*
19827202 GTCAGAGAGGCAGAATGAGCAAG-TCAAGGATC-AGCCCGATCCCCCCTTACGTGCTGTCGATCC
61 GTCAGAGAGGCAGAATGACCAAGCT-AAGGATCGA-CCCGATCCCCCC-TACGTGCTGTCGATCC
*
19827265 TGCTACCGCAACCCTC-GATTCGAT-CGATCTTAGACTGGTAATGAACTTCGTATGC
123 TGCTACCGCAACCCTCAG-TTCGATCCGATCTTAGACTGGGAATGAACTTCGTATGC
19827320 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
183 1 0.01
184 37 0.24
187 2 0.01
188 81 0.53
189 32 0.21
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAG
AGAGGCAGAATGACCAAGCTAAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCG
CAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTCGAT
Found at i:19827390 original size:158 final size:161
Alignment explanation
Indices: 19827138--19827497 Score: 408
Period size: 158 Copynumber: 2.2 Consensus size: 161
19827128 ATGCTTCGAT
* * * **
19827138 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGTCCGGGCGTTCAGCCGG
1 ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA--GTGCATCCGGGCGCTCAGCCAA
**
19827203 TCAGAGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCC-CTTACGTGCTGTCGATCCTG
64 TCAGAGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCCTC-TACGTGCTGTCGATCCCA
* * *
19827267 CTACCGCAACCCTCGATTCGA-TCGATCTTAGAC
128 CTACCACAACCCTCGATCCGACTCGAGCTTAGAC
* * * *
19827300 -TGGTAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGA-T-CATGCGGGCGCTGAGCCAAT
1 ATGG-AATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGCATCCGGGCGCTCAGCCAAT
* * * *
19827362 CGGAGAGGCAGAATGCA-TAAGTCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCAC
65 CAGAGAGGCAGAATG-AGCAAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCAC
* * *
19827426 TGCCACAACCCTCGGTCCGACTCGGGCTTAGAC
129 TACCACAACCCTCGATCCGACTCGAGCTTAGAC
* * * *
19827459 ATGGATTGAACTCCCTATGCCTAAGCCAACCCAGGAAAC
1 ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAC
19827498 AGGCGTGCGG
Statistics
Matches: 166, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
158 84 0.51
159 42 0.25
160 3 0.02
161 3 0.02
162 34 0.20
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (161 bp):
ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGCATCCGGGCGCTCAGCCAATC
AGAGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTA
CCACAACCCTCGATCCGACTCGAGCTTAGAC
Found at i:19827534 original size:159 final size:158
Alignment explanation
Indices: 19827207--19827534 Score: 358
Period size: 159 Copynumber: 2.1 Consensus size: 158
19827197 AGCCGGTCAG
**
19827207 AGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCCCTTACGTGCTGTCGATCCTGCTACC
1 AGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCCCTTACGTGCTGTCGATCCCACTACC
* * * * * *
19827272 GCAACCCTCGATTCGATCGATCTTAGACTGGTAATGAACTTCGTATGCCTAAGTCAACCCACGAA
66 ACAACCCTCGATCCGATCGAGCTTAGACTGGTAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
19827337 ATGATCATGCGGGCGCTGAGCCAATCGG
131 AAGAGCATGCGGGCGCTCAACCAACCGA
* * * *
19827365 AGAGGCAGAATGCA-TAAGTCAAGGATCAGCCCGAT-CCCCCTCTGCGTGCTGTCGGTCCCACTG
1 AGAGGCAGAATG-AGCAAGTCAAGGATCAGCCCGATCCCCCCT-TACGTGCTGTCGATCCCACTA
* * *
19827428 CCACAACCCTCGGTCCGACTCGGGCTTAGACATGG-ATTGAACTCCCTATGCCTAAGCCAACCCA
64 CCACAACCCTCGATCCGA-TCGAGCTTAGAC-TGGTAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
19827492 GGAAACAG-GCGTGCGGGTGCTCAACCGACCGA
127 CGAAA-AGAGCATGCGGGCGCTCAACCAACCGA
19827524 AGAGGCAGAAT
1 AGAGGCAGAAT
19827535 ACGTAAGCTA
Statistics
Matches: 140, Mismatches: 25, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
157 6 0.04
158 63 0.45
159 67 0.48
160 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
AGAGGCAGAATGAGCAAGTCAAGGATCAGCCCGATCCCCCCTTACGTGCTGTCGATCCCACTACC
ACAACCCTCGATCCGATCGAGCTTAGACTGGTAATGAACTCCCTATGCCTAAGCCAACCCACGAA
AAGAGCATGCGGGCGCTCAACCAACCGA
Found at i:19828661 original size:158 final size:158
Alignment explanation
Indices: 19828358--19828645 Score: 382
Period size: 158 Copynumber: 1.8 Consensus size: 158
19828348 AACTCCGTAT
* *
19828358 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
* * * * * *
19828423 CGGTCGGAGAGGTAGAATACGCAAGCCGAGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGGTCC
66 CAGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
19828488 CACTGCCACAACCCTTAGTCTGGCTGGG
131 CACTGCCACAACCCTTAGTCTGGCTGGG
** * * **
19828516 GCTTAGACATGGAATGAACTCCCTATGTGTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCT-AG
* * * *
19828581 CCAGCCAGG-GAGGCAGAATGCGCAAGCCGGGGATCGGCCTGAT-CCCCTCTGCGTGCTGTCGAT
65 CCAGCC-GGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
19828644 CC
129 CC
19828646 TGCTGTCGCA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 74 0.67
159 34 0.31
160 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
CAGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
CACTGCCACAACCCTTAGTCTGGCTGGG
Found at i:19828679 original size:158 final size:158
Alignment explanation
Indices: 19828358--19828701 Score: 363
Period size: 158 Copynumber: 2.2 Consensus size: 158
19828348 AACTCCGTAT
* *
19828358 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
* * * * * *
19828423 CGGTCGGAGAGGTAGAATACGCAAGCCGAGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGGTCC
66 CAGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
* * *
19828488 CACTGCCACAACCCTTAGTCTGGCTGGG
131 CACTGCCACAACCCTTAGTCTAGCTCGA
* ** * * **
19828516 GCTTAGACATGGAATGAACTCCCTATGTGTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCT-AG
* * * *
19828581 CCAGCCAGG-GAGGCAGAATGCGCAAGCCGGGGATCGGCCTGAT-CCCCTCTGCGTGCTGTCGAT
65 CCAGCC-GGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
** * * * *
19828644 CCTGCTGTCGCAACCCTTGGT-TCAGTTCGA
129 CCCACTGCCACAACCCTTAGTCT-AGCTCGA
*
19828674 TCTTAGAC-TGAGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCATATGC
19828702 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 113 0.74
159 34 0.22
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAGC
CAGCCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
CACTGCCACAACCCTTAGTCTAGCTCGA
Found at i:19829725 original size:26 final size:26
Alignment explanation
Indices: 19829696--19829748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
19829686 CCGATTTGAT
*
19829696 CTTAGAC-GGGGAATGAACTCCGTATG
1 CTTAGACTGGGG-ATAAACTCCGTATG
*
19829722 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
19829748 C
1 C
19829749 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:19829894 original size:368 final size:367
Alignment explanation
Indices: 19829139--19829895 Score: 772
Period size: 368 Copynumber: 2.1 Consensus size: 367
19829129 ATGATGTCGA
* **
19829139 TCCTGCTGCCACAACCCTTAGTTTCG-CTGGGGCTTAGACATGGAATGAACTCCAAATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTTT-GACTGGGGCTTAGACATGGAATGAACTCCAAATGCCTAAG
* * * * **
19829203 CCAACCCATGAAATGGGTGTACGGGCTTTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGA
65 CCAACCCACGAAACGGGCGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGA
* * * * *
19829268 TCGATCTGGTCCCCCTTGCATGCTATCGATCCTGCTGCGTAACCCTCGATCCGATCCGATCTTAG
130 TCGACCCGATCCCCCTTACATGCTATCGATCCTGCTGCATAACCCTCGATCCGATCCGATCTTAG
* * * * *
19829333 ACTGAGAATGAACTTCGTATGCTTAAACTGGGGATGACCTCCGTATGCCTAACTCAACCCATGAA
195 ACGGAGAATGAACTCCGTATGCTTAAACTGGGGATAAACTCCGTATGCCTAACTCAACCCATAAA
* * * ** * * *
19829398 ATGAGCGTATGGGCTTTCAGTCGGTTCGAGAGGCTGATTGAAGAGGCATAATGCACAAGCCAGGG
260 ACGAGCGTACGGGCTCTCACCCGGTTCGAAAGGCTGATCGAAGAGGCAGAATGCACAAGCCAGGG
* *
19829463 ATCAGCCCGATCCTTCTCTGCGTGCTGCCGATCCCGCTGCCGG
325 ATCAGCCCGATCCTCCCCTGCGTGCTGCCGATCCCGCTGCCGG
* * ***
19829506 TCCTGCTGCCACATCCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCAAATGCCTAAGC
* * * * * * ****
19829571 CAACCCACGAAACGTGCGTGCGAGCGCTCAGCTGGCCGGAGAGGTAGAATGCGCAAGTTGGGGAT
66 CAACCCACGAAACGGGCGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGAT
* * * **
19829636 CGGCCCGATCTGCCC-TACATGCTATCGATCCTGCTGCCATAATCCTCGATCCGATTTGATCTTA
131 CGACCCGATC-CCCCTTACATGCTATCGATCCTGCTG-CATAACCCTCGATCCGATCCGATCTTA
* * * *
19829700 GACGGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAAGTCAACCCATAA
194 GACGGAGAATGAACTCCGTATGCTTAAACTGGGGATAAACTCCGTATGCCTAACTCAACCCATAA
* * * * * *
19829765 AACGATCGTGCGGGGTGCTCACCCGG-TCGAAAAAG-TCGATCGAAGAGGTAGAATGCATAAGCC
259 AACGAGCGTACGGGCT-CTCACCCGGTTCG-AAAGGCT-GATCGAAGAGGCAGAATGCACAAGCC
* ** * * * *
19829828 GGGGATC-GACTTGGTCC-CCCCTAG-GTGCTGTCGATCCTGCTGCTGG
321 AGGGATCAG-CCCGATCCTCCCCT-GCGTGCTGCCGATCCCGCTGCCGG
* **
19829874 TCCTATTGCCGTAACCCTCGGT
1 TCCTACTGCCACAACCCTCGGT
19829896 CTGGTATGAT
Statistics
Matches: 313, Mismatches: 69, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
366 1 0.00
367 132 0.42
368 137 0.44
369 43 0.14
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (367 bp):
TCCTACTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCAAATGCCTAAGC
CAACCCACGAAACGGGCGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGAT
CGACCCGATCCCCCTTACATGCTATCGATCCTGCTGCATAACCCTCGATCCGATCCGATCTTAGA
CGGAGAATGAACTCCGTATGCTTAAACTGGGGATAAACTCCGTATGCCTAACTCAACCCATAAAA
CGAGCGTACGGGCTCTCACCCGGTTCGAAAGGCTGATCGAAGAGGCAGAATGCACAAGCCAGGGA
TCAGCCCGATCCTCCCCTGCGTGCTGCCGATCCCGCTGCCGG
Found at i:19830798 original size:26 final size:26
Alignment explanation
Indices: 19830762--19830814 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19830752 CCAGTCTGAT
*
19830762 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
19830788 CTTAGATTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19830814 C
1 C
19830815 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19832520 original size:159 final size:157
Alignment explanation
Indices: 19832184--19832646 Score: 484
Period size: 159 Copynumber: 2.9 Consensus size: 157
19832174 AACTCTGTAT
* ** *
19832184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCAAGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAAGCGTTCAG
* * * * * * *
19832249 CCGGCCGGAGAGACAGAATGCGCAAGTCGGGATCGACTCGGTCTCCCCCTGCATGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGTGCAAGCCGGGATCGGCTCGGTC-CCCCCTGCGTGCTGTCGATCC
* *
19832314 TGCTGCCACAACCCTCGGTCCAGTCTGA
130 TGCTGCCACAACCCTCAGTCCAGACTGA
* * * * ** *
19832342 TCTTAGAC-TAGGAAAGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAAGCGTTCA
* * * * * *
19832406 GCCGACCGAAGAGGCATAATGTGCAAGCCAAGTATCGGCCCGGTCCCCCTCTACGTGCTGTCGGT
65 GCCGACCGAAGAGGCAGAATGTGCAAGCC-GGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
* *
19832471 CCCGCTGCCACAACCCTCAGTCC-GACTGGG
128 CCTGCTGCCACAACCCTCAGTCCAGACT-GA
* * * * * * *
19832501 GCTTAGACATTGAATGAACTCCCTATGCCTAGGCCAACCCACGAAATGGGCATGCAAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAAGCGTTCAG
*
19832566 CC-AGCC-AGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCACTGCGTGCTGTCGAT
66 CCGA-CCGA-AGAGGCAGAATGTGCAAGCC-GGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGAT
* *
19832629 CCTGCTGTCGCAACCCTC
128 CCTGCTGCCACAACCCTC
19832647 GATCCGATTC
Statistics
Matches: 245, Mismatches: 53, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 111 0.45
159 132 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAAGCGTTCAG
CCGACCGAAGAGGCAGAATGTGCAAGCCGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCCAGACTGA
Found at i:19832701 original size:26 final size:26
Alignment explanation
Indices: 19832662--19832712 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
19832652 GATTCGATCC
*
19832662 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
19832688 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
19832713 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:19833069 original size:26 final size:26
Alignment explanation
Indices: 19833040--19833092 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
19833030 CCGGTCTGAT
19833040 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
19833066 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
19833092 C
1 C
19833093 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:19839955 original size:26 final size:26
Alignment explanation
Indices: 19839917--19839969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19839907 GGCTCAAAAT
**
19839917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
19839943 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
19839969 C
1 C
19839970 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:19840338 original size:159 final size:158
Alignment explanation
Indices: 19839942--19840388 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 158
19839932 AACTCCGTAT
* * *
19839942 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
19840007 CTGGTCGGAGAGGTAGAATGTGCAAGCCGAGGATCGATTCAGTCCCCCCTATGTGCTGTCGATCT
66 CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAGTCCCCCCTATGTGCTGCCGATCC
* * *
19840072 TGCTACCGCAACCCTCAGTCCGGTCCGA
131 CGCTACCACAACCCACAGTCCGGTCCGA
* * * * * * * * *
19840100 TCTTACAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
** * * * * *
19840164 GCCTATCGAAAAGGCATAATGCGCAAGTCGAGGATCGGCTC-GAT-CCCCCTCA-GCATGCTGCC
65 GCAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAG-TCCCCCCT-ATG--TGCTGCC
* * * ** *
19840226 GATCCCGCTGCCACAACCGACGGTCCGGTTGGG
126 GATCCCGCTACCACAACCCACAGTCCGGTCCGA
* * *
19840259 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** *
19840324 CAGACCGGAGAGGCAGAATGCACAAGCCGAGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAGTCCCCCCTATGTGCTGCCGATCC
19840389 TACTGCCGCA
Statistics
Matches: 222, Mismatches: 58, Indels: 18
0.74 0.19 0.06
Matches are distributed among these distances:
157 8 0.04
158 94 0.42
159 111 0.50
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAGTCCCCCCTATGTGCTGCCGATCC
CGCTACCACAACCCACAGTCCGGTCCGA
Found at i:19840444 original size:158 final size:157
Alignment explanation
Indices: 19839943--19840444 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 157
19839933 ACTCCGTATG
** * * *
19839943 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * ** ** *
19840008 TGGTCGGAGAGGTAGAATGTGCAAGCCGAGGATCGATTCAGTCCCCCCTATGTGCTGTCGATCTT
66 AGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATCCT
* * *
19840073 GCTACCGCAACCCTCAGTCCGGTCCGAT
131 GCTGCCGCAA-CCTCGGTCCGGTCTGAT
* * * * * * * *
19840101 CTTACACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * * * * *
19840166 CTATCGAAAAGGCATAATGCGCAAGTCGAGGATCGGCTC-GATCCCCCTCAGCATGCTGCCGATC
66 AGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAG-TCCCCC-CTGCGTGCTGTCGATC
* * * **
19840230 CCGCTGCCACAACCGACGGTCCGGT-TGGGG
129 CTGCTGCCGCAACC-TCGGTCCGGTCT-GAT
* * * * *
19840260 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
19840325 AGACCGGAGAGGCAGAATGCACAAGCCGAGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 AGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATCCT
*
19840390 ACTGCCGCAACTCTCGGTCCGGTCTGAT
131 GCTGCCGCAAC-CTCGGTCCGGTCTGAT
* *
19840418 CTTAGACTTGGAATGGATTTCGTATGC
1 CTTAGACTTGGAATGAACTTCGTATGC
19840445 ATAGATTGGG
Statistics
Matches: 264, Mismatches: 73, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.00
158 145 0.55
159 117 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
AGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCTCGGTCCGGTCTGAT
Found at i:19840814 original size:26 final size:26
Alignment explanation
Indices: 19840785--19840837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
19840775 CCAGTCTGAT
19840785 CTTAGAC-TAGCAATGAACTCTGTATG
1 CTTAGACAT-GCAATGAACTCTGTATG
*
19840811 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGCAATGAACTCTGTATG
19840837 C
1 C
19840838 CTAAGCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGCAATGAACTCTGTATG
Found at i:19841165 original size:159 final size:158
Alignment explanation
Indices: 19840811--19841311 Score: 434
Period size: 158 Copynumber: 3.2 Consensus size: 158
19840801 ACTCTGTATG
* * * *
19840811 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
** * * * * *
19840876 CAGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCAACCCGATCCCCCCTGCGTGCTGTCAATCCT
66 CAGTCGGAGAGGCAGAATGCACAAACCGAGGACCAACCCGATCCCCCCCGCATGCTGTCAATCCC
* *
19840941 ACTGCCGCAACCCTCAGTCTGGTCCGAT
131 ACTGCCACAACCCTCAGTCTGGTCCGAC
* ** * * *** *
19840969 CTTAGGCTGGGAATGAACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* **** **
19841034 CAGTCGGAGAGGCATAATGCACAAACCGAGGATTGGCCCGATCCCCCTCCGCATGCTGTCGGTCC
66 CAGTCGGAGAGGCAGAATGCACAAACCGAGGACCAACCCGATCCCCC-CCGCATGCTGTCAATCC
** * *
19841099 CACTGCCACAACCCTTGGTCTGG-CTGGGC
130 CACTGCCACAACCCTCAGTCTGGTC-CGAC
* * * *
19841128 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * ** * * * *
19841193 C-GAT-GGAGAGGTAGAATGCGCAAGCCG-GAGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
66 CAG-TCGGAGAGGCAGAATGCACAAACCGAG-GACCAACCCGATCCCCCCCGCATGCTGTCAATC
* * ** * * *
19841255 CTACTGTCGTAACCCTCGGTCCGGTCCGAT
129 CCACTGCCACAACCCTCAGTCTGGTCCGAC
* *
19841285 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACAAGGAATGAACTCCGTATGC
19841312 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 63, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 58 0.21
158 128 0.47
159 89 0.32
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CAGTCGGAGAGGCAGAATGCACAAACCGAGGACCAACCCGATCCCCCCCGCATGCTGTCAATCCC
ACTGCCACAACCCTCAGTCTGGTCCGAC
Found at i:19842069 original size:27 final size:26
Alignment explanation
Indices: 19842020--19842070 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
19842010 GGCTCAAAAT
* *
19842020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
19842046 CTTAGACATGGAAATGAACACCGTA
1 CTTAGAC-TGGAAATGAACACCGTA
19842071 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCGTATG
Found at i:19842418 original size:160 final size:158
Alignment explanation
Indices: 19842045--19842477 Score: 408
Period size: 160 Copynumber: 2.7 Consensus size: 158
19842035 AACTCCGTAT
* * *
19842045 GCTTAGACATGGAAATGAACACCGTACGCCTAAGCCAA-CCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
19842109 ACCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTATCGATC
65 ACCGATCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATC
* * * **
19842174 CTGCTGTCGTAACCCTCCATTTGGTCTGA
130 CCGCTGCCGCAACCCTCCATCCGGTCTGA
* * * * * *
19842203 TCTTAGAC-TGGGAATGAACTCTGC-ATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTG
1 GCTTAGACAT-GGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC
* * ** * * * *
19842266 AGCCGATCGAAAAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGTTGTTGG
64 AACCGATCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTATCGA
* * *
19842331 TCCCGTTTGCCGCAACCCTCGATCCGGT-TAGG
128 TCCCG-CTGCCGCAACCCTCCATCCGGTCT-GA
* * *
19842363 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* *** * * *
19842428 CCG-GCTGGGGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCT
66 CCGATC-GAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCT
19842478 GCACGTTGTC
Statistics
Matches: 218, Mismatches: 48, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 19 0.09
158 73 0.33
159 19 0.09
160 106 0.49
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGATCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
CGCTGCCGCAACCCTCCATCCGGTCTGA
Found at i:19842755 original size:26 final size:26
Alignment explanation
Indices: 19842717--19842769 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
19842707 CCAATCCAAT
19842717 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
19842743 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
19842769 C
1 C
19842770 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:19843044 original size:158 final size:159
Alignment explanation
Indices: 19842744--19843243 Score: 385
Period size: 158 Copynumber: 3.2 Consensus size: 159
19842734 CTCTGTATGC
* * *
19842744 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCC
* * * * * *
19842809 GGCCGAAGAGGCAAAATGTGCAAGCTGGGGACTAGCCCGATCCCTCTCTGTGTGCTATCGATCCT
66 GACCGAAGAGGCAAAATGCGCAAGCTAGGGACGAGCCCGATCCCTCTCTGCGTGCTATCGATCCC
* * *
19842874 ATTGCCGCAACCCTTGGTCTGATCCGATT
131 ACTGCCACAACCCTCGGTCTGATCCGATT
* * * * * * *
19842903 TTAGAC-TGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCC
* * * * * *
19842967 GACTGAAGAGGCATAATGCGTAAG-TCAGGGATCGA-CCTGATCCCTCTCTGCGTGCTGTCGGTC
66 GACCGAAGAGGCAAAATGCGCAAGCT-AGGGA-CGAGCCCGATCCCTCTCTGCGTGCTATCGATC
* * * ***
19843030 CCGCTGCCACAACCCTCGGTCCGA-CTGGGGC
129 CCACTGCCACAACCCTCGGTCTGATC-CGATT
* * * * *
19843061 TTAGACATGGAATGAACTCCCTAT-CGCTAAGCCAACCCACGAAATG-G-ATGTGCGGGGGCTCA
1 TTAGACATGGAATGAACTCCGTATGC-CTAAGCCAACCCACAAAACGAGCA--TACGGGCGCTCA
* * * * * * *
19843123 GTCGGTCGGAA-AGGCAGAATGCGCAAG-TCGAGGATCG-GCTCGATCCC-CTCTGCGTGCTACC
63 G-CCGACCGAAGAGGCAAAATGCGCAAGCTAG-GGA-CGAGCCCGATCCCTCTCTGCGTGCTATC
* * * * * * *
19843184 GATCCTACTGTCGCAACCTTCGGTCTGGTTCGATC
125 GATCCCACTGCCACAACCCTCGGTCTGATCCGATT
19843219 TTAGAC-TGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
19843244 TTAGGCTGGG
Statistics
Matches: 269, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 19 0.07
158 164 0.61
159 80 0.30
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCC
GACCGAAGAGGCAAAATGCGCAAGCTAGGGACGAGCCCGATCCCTCTCTGCGTGCTATCGATCCC
ACTGCCACAACCCTCGGTCTGATCCGATT
Found at i:19843252 original size:25 final size:26
Alignment explanation
Indices: 19843218--19843269 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19843208 CTGGTTCGAT
19843218 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19843243 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19843269 C
1 C
19843270 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19843360 original size:696 final size:693
Alignment explanation
Indices: 19842017--19844039 Score: 2422
Period size: 696 Copynumber: 2.9 Consensus size: 693
19842007 CGTGGCTCAA
* *
19842017 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAATGAACACCGTACGCCTAAGCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGG-AATGAAC-TCGTATGCCTAAGCCA
** * *
19842082 A-CCACGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCACAAG-TCGGGGA-T
64 ACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGACT
* * * ** *
19842144 CGGCCCGATCCCCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCCATTTGGTCTGATCTTAG
128 -GGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAG
* * * *
19842209 ACTGGGAATGAACTCTGCATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGA-T
192 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACT
* * * * * *
19842273 CGAAAAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGTTGTTGGTCCCGTT
257 -GAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCG-C
* * ** *
19842338 TGCCGCAACCCTCGATCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATAC-CTAAGCCAACC
320 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT-CGCTAAGCCAACC
* * * * * *
19842402 CACGAAACGGGCGTACGGGCGTTCAACCGG-CTGGGGAGGCAGAATGCGCAAGCCGAGGATCGGC
384 CACGAAA-AGGAGTGCGGGCGCTC-AGCGGTC-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGC
** * * * *
19842466 CCGATCCCCCCTGCACGTTGTCGATCCTAC-ACCGCAACCCTT-GATTCGGTCAGATCTTAGATT
446 CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAA-CCTTCGGTT-GGTCAGATCTTAGACT
* * * * *
19842529 GGGAATGAACTTTGTATGCTTAGACTGAGGATGAACTTCGTATACCTAAGTCAACCCACGAAACG
509 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
* * * * * * * *
19842594 AGCATGCAGGCACCCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGGTCCCCC
574 AGCATGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCC
19842659 CTGCGTGCTGTCGATCCTACTGCTGGCCCTGCTACCGCAACCCTCGGTCCAATCC
639 CTGCGTGCTGTCGATCCTACTGCTGGCCCTGCTACCGCAACCCTCGGTCCAATCC
*
19842714 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC-TCGTATGCCTAAGCCAA
* * * * * * *
19842779 CCCACAAAACGAGCATACGGGTGCTCAGTCGGCCGAAGAGGCAAAATGTGCAAGCTGGGGACTAG
65 CCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACTGG
* * ** * * * *
19842844 CCCGATCCCTCTCTGTGTGCTATCGATCCTATTGCCGCAACCCTTGGTCTGATCCGATTTTAGAC
130 CCCGATCCC-CCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
19842909 T-GGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGTTGAGCCGACTGA
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTGA
* * * * *
19842973 AGAGGCATAATGCGTAAGTCAGGGATCGACCTGATCCCTCTCTGCGTGCTGTCGGTCCCGCTGCC
259 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCC
19843038 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCGCTAAGCCAACCCACGA
324 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCGCTAAGCCAACCCACGA
* * * * *
19843103 AATGGATGTGCGGGGGCTCAGTCGGTCGGAAAGGCAGAATGCGCAAGTCGAGGATCGGCTCGATC
389 AAAGGA-GTGCGGGCGCTCAG-CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATC
* ** *
19843168 CCCTCTGCGTGCTACCGATCCTACTGTCGCAACCTTCGGTCTGGTTC-GATCTTAGACT-GGAAT
452 CCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGT-TGG-TCAGATCTTAGACTGGGAAT
* * ** *
19843231 GAACTCCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAGCGTG
515 GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATG
* * * * * *
19843296 CGGGCGCTCAGGCGGTTAGAGAGGCAGAATGCGCAAGCTGGGGATCGATCTAGTCCCTCCTGCGT
580 CGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGT
* * * * *
19843361 GCTGTCGATCCTGCTGCTGGTCCTGCTACTGCAACCCTCGGTCCAGTTC
645 GCTGTCGATCCTACTGCTGGCCCTGCTACCGCAACCCTCGGTCCAATCC
* * * *
19843410 AATCTTTGACTGGGAATGAACTCCGCATGCTTAAACATGGAATGAACTCTGTGTGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC-GTATGCCTAAGCCAA
* * * * **
19843475 CCCACGAAACGAGCGTGCAGGCGCTCAGAT-GGCCGGAGAGGTAGAATGCGTAAGCCAGGGAGC-
65 CCCACGAAACGAGCGTACGGGCGCTCAG-TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGA-CT
* *
19843538 GGCCCGATCCCCCCTGCGTGCTGTAGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
128 GGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * *
19843603 CTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTGAGCCGACAG
193 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTG
* * * * * * *
19843668 GAGAGGCGTAATGCACAAGCCGGGGACCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGC
258 AAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGC
* * * * *
19843733 CACAA-CCTCAGTCCGACTGGGGCATAGACATGGAATGAACTTCGTAT-GCCTAAGCCAACCCAT
323 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCG-CTAAGCCAACCCAC
* * *
19843796 GAAACAGGCA-TGCAGGCGCTCAGCTGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCG
387 GAAA-AGG-AGTGCGGGCGCTCAGC-GGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCG
* * * * *
19843860 ATCCCCCCTGCGTGCTGTCGATCCTATTGGCACAACCCTCGGTTTGGTCTGATCTTAGACTGGGA
449 ATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGG-TTGGTCAGATCTTAGACTGGGA
*
19843925 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCA
513 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCA
* * * * *
19843990 TACGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGTAAGCCGGGGATCGA
578 TGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
19844040 ACGGGTGGTA
Statistics
Matches: 1120, Mismatches: 182, Indels: 49
0.83 0.13 0.04
Matches are distributed among these distances:
694 4 0.00
695 201 0.18
696 643 0.57
697 224 0.20
698 48 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (693 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACTGGC
CCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACTGAAG
AGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCGCTAAGCCAACCCACGAAA
AGGAGTGCGGGCGCTCAGCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC
CTGCGTGCTGTCGATCCTACTGCCGCAACCTTCGGTTGGTCAGATCTTAGACTGGGAATGAACTC
TGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCG
CTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTC
GATCCTACTGCTGGCCCTGCTACCGCAACCCTCGGTCCAATCC
Found at i:19843560 original size:196 final size:195
Alignment explanation
Indices: 19843196--19843573 Score: 436
Period size: 196 Copynumber: 1.9 Consensus size: 195
19843186 TCCTACTGTC
* ** * * ** *
19843196 GCAACCTTCGGTCTGGTTCGATCTTAGACTGGAATGAACTCCGTATGCTTAGGCTGGGGATGAAC
1 GCAACCCTCGGTCCAGTTCAATCTTAGACTGGAATGAACTCCGCATGCTTAAACTGGGAATGAAC
* ** * * * **
19843261 TCCGTATGCCTAAGTCAACCCATTAAATGAGCGTGCGGGCGCTCAGGCGGTTAGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGGCCAGAGAGGCAGAAT
** * * * * *
19843326 GCGCAAGCTGGGGATCGATCTAGTCCCTCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTACT
131 GCGCAAGCCAGGGAGCGACCGAGTCCCCCCTGCGTGCTGTAGATCCTGCTGCTGGTCCTGCTACT
*
19843391 GCAACCCTCGGTCCAGTTCAATCTTTGACTGGGAATGAACTCCGCATGCTTAAACAT-GGAATGA
1 GCAACCCTCGGTCCAGTTCAATCTTAGACT-GGAATGAACTCCGCATGCTTAAAC-TGGGAATGA
* * * * *
19843455 ACTCTGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGATGGCCGGAGAGGTAGA
64 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGGCCAGAGAGGCAGA
* *
19843520 ATGCGTAAGCCAGGGAGCGGCCCGA-TCCCCCCTGCGTGCTGTAGATCCTGCTGC
129 ATGCGCAAGCCAGGGAGC-GACCGAGTCCCCCCTGCGTGCTGTAGATCCTGCTGC
19843574 CGCAACCCTC
Statistics
Matches: 149, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
195 25 0.17
196 120 0.81
197 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (195 bp):
GCAACCCTCGGTCCAGTTCAATCTTAGACTGGAATGAACTCCGCATGCTTAAACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGGCCAGAGAGGCAGAAT
GCGCAAGCCAGGGAGCGACCGAGTCCCCCCTGCGTGCTGTAGATCCTGCTGCTGGTCCTGCTACT
Found at i:19843919 original size:158 final size:158
Alignment explanation
Indices: 19843448--19843939 Score: 541
Period size: 158 Copynumber: 3.1 Consensus size: 158
19843438 GCTTAAACAT
* * *
19843448 GGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGATGGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGACGGAG
* * * * *
19843513 AGGTAGAATGCGTAAGCC-AGGGAGCGGCCCGATCCCCCCTGCGTGCTGTAGATCCTGCTGCCGC
66 AGGTAGAATGCGCAAGCCGA-GGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
*
19843577 AACCCTCGGTCTGGTCTGATCTTAGACTG
130 AACCCTCGGTTTGGTCTGATCTTAGACTG
* ** * * *
19843606 GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTGAGC-CGACAGGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGAC-GGA
* * * * * *
19843670 GAGG-CGTAATGCACAAGCCGGGGACCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCC
65 GAGGTAG-AATGCGCAAGCCGAGGACCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCC
* ** * ** *
19843734 ACAA-CCTCAG-TCCGACTGGGGCATAGACAT-
128 ACAACCCTCGGTTTGGTCT-GATCTTAGAC-TG
* * *
19843764 GGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAAC-AGGCATGCAGGCGCTCAGCTGGTCGG
1 GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCGCTCAGCTGGACGG
* ** *
19843827 AGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTATTGGCA
64 AGAGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
19843892 CAACCCTCGGTTTGGTCTGATCTTAGACTG
129 CAACCCTCGGTTTGGTCTGATCTTAGACTG
19843922 GGAATGAACTCTGTATGC
1 GGAATGAACTCTGTATGC
19843940 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 54, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 31 0.12
158 202 0.76
159 33 0.12
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGACGGAG
AGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTCGGTTTGGTCTGATCTTAGACTG
Found at i:19843942 original size:26 final size:26
Alignment explanation
Indices: 19843913--19843965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19843903 TTGGTCTGAT
*
19843913 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
19843939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
19843965 C
1 C
19843966 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19844865 original size:26 final size:26
Alignment explanation
Indices: 19844829--19844879 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19844819 CCGGTTAGAT
* *
19844829 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
19844855 CTTAGACTGGGGATTAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
19844880 ACCTAAGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19844967 original size:184 final size:183
Alignment explanation
Indices: 19844643--19845055 Score: 474
Period size: 184 Copynumber: 2.3 Consensus size: 183
19844633 GTGGCTCAAA
* * * *
19844643 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-AGAATGAACCCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATACCTAAGCCAA
* * ** **
19844707 CCCACGAAACAAACGTGCGAGCGCTCAGACAGTCGGAGAGGCAGAATGTGCAAGTCAAGGATCTG
65 CCCACGAAACAAACGTGCGAGCGCTCAGACAGCCAGAGAGGCAGAATGCACAAGTCAAGGATAGG
* * * * * * *
19844772 CCTGATCCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCTCAGTCCGGT-TAG
130 CCCGATCCCCCCTACGCGCTGCCAATACTACTGTCACAA-CCTCAGTCCAGTCT-G
* * * * *
19844827 ATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGGATTAACTCCGTATACCTAAGTCGAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGCCAAC
* * * * * *
19844892 CCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCATAATGCACAAG-CTGAGGATAGG
66 CCACGAAACAAACGTGCGAGCGCTCAGACAGCCAGAGAGGCAGAATGCACAAGTC-AAGGATAGG
* ** *
19844956 CCCGGTCCCCCCTGTGCGCTGCCAATACTACTGTCATAACCTCAGTCCAGTCTG
130 CCCGATCCCCCCTACGCGCTGCCAATACTACTGTCACAACCTCAGTCCAGTCTG
19845010 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
19845056 TCATATGTCT
Statistics
Matches: 191, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
182 34 0.18
183 23 0.12
184 134 0.70
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (183 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGCCAAC
CCACGAAACAAACGTGCGAGCGCTCAGACAGCCAGAGAGGCAGAATGCACAAGTCAAGGATAGGC
CCGATCCCCCCTACGCGCTGCCAATACTACTGTCACAACCTCAGTCCAGTCTG
Found at i:19845062 original size:26 final size:25
Alignment explanation
Indices: 19845012--19845062 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
19845002 CCAGTCTGAT
*
19845012 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCATATG
* *
19845037 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACT-GGAATGAACTCCATATG
19845063 TCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Done.