Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 27 of 138
Found at i:6720122 original size:9 final size:9
Alignment explanation
Indices: 6720060--6720125 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
6720050 GAGATTTCAT
6720060 ATTTGCAAAG
1 ATTTGC-AAG
*
6720070 GTTT-CAA-
1 ATTTGCAAG
6720077 ATTTGCAAGG
1 ATTTGCAA-G
*
6720087 ATTT-CCAG
1 ATTTGCAAG
6720095 ATTTGCAAG
1 ATTTGCAAG
*
6720104 AATT-CAAAG
1 ATTTGC-AAG
6720113 ATTTGCAAG
1 ATTTGCAAG
6720122 ATTT
1 ATTT
6720126 TCATATTTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
7 3 0.07
8 11 0.25
9 22 0.50
10 8 0.18
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (9 bp):
ATTTGCAAG
Found at i:6720138 original size:17 final size:17
Alignment explanation
Indices: 6720113--6720146 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6720103 GAATTCAAAG
* *
6720113 ATTTGCAAGATTTTCAT
1 ATTTACAAGAATTTCAT
6720130 ATTTACAAGAATTTCAT
1 ATTTACAAGAATTTCAT
6720147 GTTCGCAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (17 bp):
ATTTACAAGAATTTCAT
Found at i:6720324 original size:33 final size:34
Alignment explanation
Indices: 6720287--6720359 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 34
6720277 CCAAATTCGT
*
6720287 AAGAATTTTAGATTAAAAAAAATTT-AATTTCAC
1 AAGAATTTTAAATTAAAAAAAATTTCAATTTCAC
* * * *
6720320 AAGAATTTTAAATTTACAAGAATTTCAATTTCAT
1 AAGAATTTTAAATTAAAAAAAATTTCAATTTCAC
6720354 AAGAAT
1 AAGAAT
6720360 AAAAAATTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 21 0.62
34 13 0.38
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (34 bp):
AAGAATTTTAAATTAAAAAAAATTTCAATTTCAC
Found at i:6720329 original size:17 final size:17
Alignment explanation
Indices: 6720309--6720549 Score: 122
Period size: 17 Copynumber: 14.1 Consensus size: 17
6720299 TTAAAAAAAA
6720309 TTTAATTTCACAAGAAT
1 TTTAATTTCACAAGAAT
6720326 TTTAAATTT-ACAAGAAT
1 TTT-AATTTCACAAGAAT
* *
6720343 TTCAATTTCATAAGAAT
1 TTTAATTTCACAAGAAT
*** *
6720360 AAAAAATTT-GCAAGAAT
1 -TTTAATTTCACAAGAAT
*
6720377 TTT-ATGTTCATAAGAATT
1 TTTAAT-TTCACAAGAA-T
*
6720395 TTTAGA-TTCACAAGAAA
1 TTTA-ATTTCACAAGAAT
* *
6720412 TTCAATTTCACAATAAT
1 TTTAATTTCACAAGAAT
* * *
6720429 TTCATATTT-GCAATAAT
1 TTTA-ATTTCACAAGAAT
* *
6720446 TTTGGATTT-GCAAGAA-
1 TTT-AATTTCACAAGAAT
* *
6720462 TTCAATTTCATAAGAAT
1 TTTAATTTCACAAGAAT
* *
6720479 TTCAAATTT-GCAAGAAT
1 TT-TAATTTCACAAGAAT
6720496 TTTAGATTT-ACAAGAAT
1 TTTA-ATTTCACAAGAAT
**
6720513 TTTAATTTCGTAAGAATT
1 TTTAATTTCACAAGAA-T
* *
6720531 TTTAAATTCGCAAGAAT
1 TTTAATTTCACAAGAAT
6720548 TT
1 TT
6720550 CAACTTCATC
Statistics
Matches: 173, Mismatches: 34, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
15 6 0.03
16 20 0.12
17 99 0.57
18 47 0.27
20 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40
Consensus pattern (17 bp):
TTTAATTTCACAAGAAT
Found at i:6720358 original size:34 final size:34
Alignment explanation
Indices: 6720185--6720558 Score: 160
Period size: 34 Copynumber: 11.0 Consensus size: 34
6720175 CTTAGATTCG
*
6720185 TAAGAATTTTAAATTTGA-AAGAAATTT-AGTTTCA
1 TAAGAATTTTAAATTT-ACAAG-AATTTCAATTTCA
* * * * **
6720219 CAACAATTTCAAATTTACAACAATTT-AAGTTTTG
1 TAAGAATTTTAAATTTACAAGAATTTCAA-TTTCA
* *** * ** * *
6720253 CAAGAATGAAAAATTCACAAGAA-CCCAAATTCG
1 TAAGAATTTTAAATTTACAAGAATTTCAATTTCA
* * * *
6720286 TAAGAATTTTAGATTAAAAAAAATTT-AATTTCA
1 TAAGAATTTTAAATTTACAAGAATTTCAATTTCA
*
6720319 CAAGAATTTTAAATTTACAAGAATTTCAATTTCA
1 TAAGAATTTTAAATTTACAAGAATTTCAATTTCA
*** * *
6720353 TAAGAATAAAAAATTTGCAAGAATTT-TATGTTCA
1 TAAGAATTTTAAATTTACAAGAATTTCAAT-TTCA
* * *
6720387 TAAGAATTTTTAGATTCACAAGAAATTCAATTTCA
1 TAAGAA-TTTTAAATTTACAAGAATTTCAATTTCA
* * * * * * **
6720422 CAATAATTTCATATTTGCAATAATTTTGGATTTGC-
1 TAAGAATTTTAAATTTACAAGAA-TTTCAATTT-CA
* *
6720457 -AAGAA--TTCAATTTCATAAGAATTTCAAATTTGC-
1 TAAGAATTTTAAATTT-ACAAGAATTTC-AATTT-CA
* * *
6720490 -AAGAATTTTAGATTTACAAGAATTTTAATTTCG
1 TAAGAATTTTAAATTTACAAGAATTTCAATTTCA
** *
6720523 TAAGAATTTTTAAATTCGCAAGAATTTCAACTTCA
1 TAAGAA-TTTTAAATTTACAAGAATTTCAATTTCA
6720558 T
1 T
6720559 CATTGTAAGG
Statistics
Matches: 246, Mismatches: 77, Indels: 33
0.69 0.22 0.09
Matches are distributed among these distances:
32 9 0.04
33 73 0.30
34 105 0.43
35 56 0.23
36 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.37
Consensus pattern (34 bp):
TAAGAATTTTAAATTTACAAGAATTTCAATTTCA
Found at i:6720375 original size:100 final size:101
Alignment explanation
Indices: 6720124--6720367 Score: 260
Period size: 101 Copynumber: 2.4 Consensus size: 101
6720114 TTTGCAAGAT
* * * * ** * ** *
6720124 TTTCATATTTACAAGAATTTCA-TGTTCGCAAGAATGGAAGATTCACAAGAACTTAGATTCGTAA
1 TTTCAAATTTACAACAATTTAAGT-TTCACAAGAATAAAAAATTCACAAGAACCCAAATTCGTAA
* * *
6720188 GAATTTTAAATTTGAAAGAAATTTAGTTTCACAACAA
65 GAATTTTAAATTTAAAAAAAATTTAATTTCACAACAA
** *
6720225 TTTCAAATTTACAACAATTTAAGTTTTGCAAGAATGAAAAATTCACAAGAACCCAAATTCGTAAG
1 TTTCAAATTTACAACAATTTAAGTTTCACAAGAATAAAAAATTCACAAGAACCCAAATTCGTAAG
* *
6720290 AATTTTAGA-TTAAAAAAAATTTAATTTCACAAGAA
66 AATTTTAAATTTAAAAAAAATTTAATTTCACAACAA
* * *
6720325 TTTTAAATTTACAAGAATTTCAA-TTTCATAAGAATAAAAAATT
1 TTTCAAATTTACAACAATTT-AAGTTTCACAAGAATAAAAAATT
6720368 TGCAAGAATT
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
100 56 0.46
101 64 0.53
102 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.34
Consensus pattern (101 bp):
TTTCAAATTTACAACAATTTAAGTTTCACAAGAATAAAAAATTCACAAGAACCCAAATTCGTAAG
AATTTTAAATTTAAAAAAAATTTAATTTCACAACAA
Found at i:6720438 original size:69 final size:67
Alignment explanation
Indices: 6720307--6720557 Score: 166
Period size: 69 Copynumber: 3.7 Consensus size: 67
6720297 GATTAAAAAA
* * * *
6720307 AATTTAATTTCACAAGAATTTTAAATTTACAAGAATTTCAATTTCATAAGAATAAAAAATTTGCA
1 AATTTTATTTCACAAGAATTTTAAATTCACAAGAAATTCAATTTCACAAGAATAAAAAATTTGCA
6720372 AG
66 AG
* * * *** *
6720374 AATTTTATGTTCATAAGAATTTTTAGATTCACAAGAAATTCAATTTCACAATAATTTCATATTTG
1 AATTTTAT-TTCACAAGAA-TTTTAAATTCACAAGAAATTCAATTTCACAAGAATAAAAAATTTG
*
6720439 CAAT
64 CAAG
* * * * * * *** *
6720443 AATTTTGGATTT-GCAAGAA-TTCAATTTCATAAGAATTTCAAATTT-GCAAGAATTTTAGATTT
1 AATTTT--ATTTCACAAGAATTTTAAATTCACAAGAAATTC-AATTTCACAAGAATAAAAAATTT
*
6720505 ACAAG
63 GCAAG
** * * *
6720510 AATTTTAATTTCGTAAGAATTTTTAAATTCGCAAGAATTTCAACTTCA
1 AATTTT-ATTTCACAAGAA-TTTTAAATTCACAAGAAATTCAATTTCA
6720558 TCATTGTAAG
Statistics
Matches: 142, Mismatches: 33, Indels: 16
0.74 0.17 0.08
Matches are distributed among these distances:
66 4 0.03
67 50 0.35
68 18 0.13
69 66 0.46
70 2 0.01
71 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (67 bp):
AATTTTATTTCACAAGAATTTTAAATTCACAAGAAATTCAATTTCACAAGAATAAAAAATTTGCA
AG
Found at i:6722333 original size:16 final size:16
Alignment explanation
Indices: 6722314--6722354 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
6722304 CACCATTAAC
6722314 TTTTTTTTTCCTTTAT
1 TTTTTTTTTCCTTTAT
* * *
6722330 TTTTTTCTTCTTTTCT
1 TTTTTTTTTCCTTTAT
6722346 TTTTTTTTT
1 TTTTTTTTT
6722355 TTACACTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTCCTTTAT
Found at i:6726141 original size:18 final size:18
Alignment explanation
Indices: 6726120--6726154 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6726110 GTTTAAAATC
6726120 TAATTT-TTATAAAAAAAA
1 TAATTTATT-TAAAAAAAA
6726138 TAATTTATTTAAAAAAA
1 TAATTTATTTAAAAAAA
6726155 TATCTTCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATTTATTTAAAAAAAA
Found at i:6726492 original size:13 final size:13
Alignment explanation
Indices: 6726469--6726503 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
6726459 AATAAATATA
6726469 AAAACTAAAAAGTC
1 AAAACTAAAAA-TC
6726483 AAAACTAAAAATC
1 AAAACTAAAAATC
6726496 AAAA-TAAA
1 AAAACTAAA
6726504 GAAGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.19
13 6 0.29
14 11 0.52
ACGTcount: A:0.71, C:0.11, G:0.03, T:0.14
Consensus pattern (13 bp):
AAAACTAAAAATC
Found at i:6728741 original size:14 final size:15
Alignment explanation
Indices: 6728716--6728749 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6728706 TGGGAGATAA
*
6728716 AAAAGAAAATAAAAT
1 AAAAGAAAATAAAAC
6728731 AAAAG-AAATAAAAC
1 AAAAGAAAATAAAAC
6728745 AAAAG
1 AAAAG
6728750 TGTAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAAGAAAATAAAAC
Found at i:6729497 original size:16 final size:15
Alignment explanation
Indices: 6729472--6729505 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
6729462 GCAAAAATCT
*
6729472 AAAAAAATAAAGTAA
1 AAAAAAATAAAATAA
6729487 AAAACAAATAAAATAA
1 AAAA-AAATAAAATAA
6729503 AAA
1 AAA
6729506 GGAAGCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAAAAATAAAATAA
Found at i:6730171 original size:104 final size:105
Alignment explanation
Indices: 6729985--6730173 Score: 267
Period size: 104 Copynumber: 1.8 Consensus size: 105
6729975 GTAAGTCAAC
* * *
6729985 AAATCTCACCAAATTTTCTCTTTTTACTTACCTAAGAAGTTTTTTTACAACAAAAAACTACAAAG
1 AAATATCACCAAATCTTCTCTTTTTACTTACCTAAGAAGTTTTTTTACAAAAAAAAACTACAAAG
6730050 ACTACATTTCTTATGTAAGAAATATAGTTTTTGTGCACTA
66 ACTACATTTCTTATGTAAGAAATATAGTTTTTGTGCACTA
*** *
6730090 AAATATCACCAAATCTTCTCTTTTTA-TTTTTTCAAGAA-TTTTTTT-CATAAAAAAAATTACAA
1 AAATATCACCAAATCTTCTCTTTTTACTTACCT-AAGAAGTTTTTTTACA-AAAAAAAACTACAA
*
6730152 AGACTACTTTTCTTATGTAAGA
64 AGACTACATTTCTTATGTAAGA
6730174 GACATAATCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
103 2 0.03
104 43 0.58
105 29 0.39
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (105 bp):
AAATATCACCAAATCTTCTCTTTTTACTTACCTAAGAAGTTTTTTTACAAAAAAAAACTACAAAG
ACTACATTTCTTATGTAAGAAATATAGTTTTTGTGCACTA
Found at i:6730420 original size:108 final size:105
Alignment explanation
Indices: 6730228--6730483 Score: 282
Period size: 108 Copynumber: 2.4 Consensus size: 105
6730218 TAAGTCAACG
* * *
6730228 AATCTCAACAAA-TCTTCTTTTTCATTTTTTC-AAGAATTTTTTTTTTACAATAAAAAACTACAA
1 AATCTC-ACAAATTTTTCTTTTT-A-CTTTTCAAAGATTTTTTTTTTTACAATAAAAAACTACAA
* * *
6730291 AGACTACTTTTCTAATATAAGAAACATAATCTTTGTGTATCAA
63 AAACTACCTTTCTAATATAAGAAACATAATCTTTGTGTACCAA
* * *
6730334 AATCTCACCAAATCTTTTCTTTTTGCTTTTCAAAGACTTTTTTTTTTTTCAATAAAAAACTATAA
1 AATCTCA-CAAAT-TTTTCTTTTTACTTTTCAAAGA-TTTTTTTTTTTACAATAAAAAACTACAA
* * ** * *
6730399 AAACTACCTTTCTTATGTAAGAAATTTAGTCTTTTTGTACCAA
63 AAACTACCTTTCTAATATAAGAAACATAATCTTTGTGTACCAA
* * *
6730442 AATCTCACAAATTTTTTTTTTTATTTTTCTAAGATTTTTTTT
1 AATCTCACAAATTTTTCTTTTTACTTTTCAAAGATTTTTTTT
6730484 ACAACAAAAA
Statistics
Matches: 126, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
105 9 0.07
106 33 0.26
107 9 0.07
108 75 0.60
ACGTcount: A:0.34, C:0.15, G:0.05, T:0.47
Consensus pattern (105 bp):
AATCTCACAAATTTTTCTTTTTACTTTTCAAAGATTTTTTTTTTTACAATAAAAAACTACAAAAA
CTACCTTTCTAATATAAGAAACATAATCTTTGTGTACCAA
Found at i:6735247 original size:2 final size:2
Alignment explanation
Indices: 6735242--6735267 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6735232 TATATGTGTG
6735242 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6735268 GGCTAATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6740481 original size:22 final size:21
Alignment explanation
Indices: 6740452--6740494 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
6740442 TTCTATTATG
6740452 TAAAATTA-ATCACATTAAGAA
1 TAAAATTATATCA-ATTAAGAA
*
6740473 TAAATATTATATTAATTAAGAA
1 TAAA-ATTATATCAATTAAGAA
6740495 ATTAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 12 0.63
23 3 0.16
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (21 bp):
TAAAATTATATCAATTAAGAA
Found at i:6740529 original size:21 final size:20
Alignment explanation
Indices: 6740493--6740536 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
6740483 ATTAATTAAG
* *
6740493 AAATTAATAATTTAAATATT
1 AAATTAAAAATTTAAAAATT
6740513 AAATTAAAAATTTTAAAAATT
1 AAATTAAAAA-TTTAAAAATT
6740534 AAA
1 AAA
6740537 ATATTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATTAAAAATTTAAAAATT
Found at i:6740538 original size:29 final size:27
Alignment explanation
Indices: 6740481--6740549 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 27
6740471 AATAAATATT
* *
6740481 ATATT-AATTAAGAAATTAATAATTTAA
1 ATATTAAATTAA-AAATTAAAAATTAAA
6740508 ATATTAAATTAAAAATTTTAAAAATTAAA
1 ATATTAAATTAAAAA--TTAAAAATTAAA
*
6740537 ATATTATATTAAA
1 ATATTAAATTAAA
6740550 TATGTTACTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 8 0.22
28 6 0.17
29 22 0.61
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (27 bp):
ATATTAAATTAAAAATTAAAAATTAAA
Found at i:6742007 original size:14 final size:14
Alignment explanation
Indices: 6741979--6742013 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
6741969 TTAAAATTTG
*
6741979 AATTTATGTATATAT
1 AATTT-TGTAAATAT
6741994 AATTTTGTAAATAT
1 AATTTTGTAAATAT
6742008 AATTTT
1 AATTTT
6742014 AAATTTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (14 bp):
AATTTTGTAAATAT
Found at i:6746987 original size:39 final size:39
Alignment explanation
Indices: 6746929--6747392 Score: 666
Period size: 39 Copynumber: 12.0 Consensus size: 39
6746919 TTACTCATCT
*
6746929 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6746968 CCTCCTCCTCCGAAAGAGGAGCCATACAAATACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747007 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCT
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747046 CCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
* *
6747085 CCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGTCT
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747124 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTC-C
* * ***** ** *
6747164 CC-CCACCCCCT--CCTCCAG-TTTACAAATACAAGTCT
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747199 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCT
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
* * *
6747238 CCTCCTCCACCTAAGGAGGAGCCATACAAGTACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
* *
6747277 CCTCCTCCTCCTAAAGAGGAGCCATATAAGTACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747316 CCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGTCC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
*
6747355 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTC
1 CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTC
6747393 TCCCCCACCA
Statistics
Matches: 379, Mismatches: 41, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
35 2 0.01
36 21 0.06
37 2 0.01
38 2 0.01
39 350 0.92
40 2 0.01
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.19
Consensus pattern (39 bp):
CCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCC
Found at i:6747259 original size:192 final size:192
Alignment explanation
Indices: 6746992--6747353 Score: 643
Period size: 192 Copynumber: 1.9 Consensus size: 192
6746982 AGAGGAGCCA
*
6746992 TACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCTCC
1 TACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCACC
6747057 TAAAGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGT
66 TAAAGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGT
* *
6747122 CTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
131 CCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
*
6747184 TACAAATACAAGTCTCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCACC
1 TACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCACC
* * * *
6747249 TAAGGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATATAAGTACAAGT
66 TAAAGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGT
*
6747314 CCCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGTC
131 CCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTC
6747354 CCCTCCTCCT
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
192 161 1.00
ACGTcount: A:0.32, C:0.35, G:0.14, T:0.19
Consensus pattern (192 bp):
TACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCACC
TAAAGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGT
CCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
Found at i:6747361 original size:231 final size:231
Alignment explanation
Indices: 6746953--6747401 Score: 799
Period size: 231 Copynumber: 1.9 Consensus size: 231
6746943 GGAGGAGCCA
*
6746953 TACAAATACAAGTCCCCTCCTCCTCCGAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCC
1 TACAAATACAAGTCCCCTCCTCCTCCGAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCACC
*
6747018 TAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGT
66 TAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGT
*
6747083 CCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
131 CCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCA
6747148 TACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
196 TACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
* * *
6747184 TACAAATACAAGTCTCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAGTCTCCTCCTCCACC
1 TACAAATACAAGTCCCCTCCTCCTCCGAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCACC
* * *
6747249 TAAGGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATATAAGTACAAGT
66 TAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGT
* *
6747314 CCCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCA
131 CCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCA
6747379 TACAAATACAAGTCTCCCCCACC
196 TACAAATACAAGTCTCCCCCACC
6747402 ACCACCACCC
Statistics
Matches: 207, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
231 207 1.00
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.19
Consensus pattern (231 bp):
TACAAATACAAGTCCCCTCCTCCTCCGAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCACC
TAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAGT
CCCCTCCTCCTCCCAAAGAGGAGCCATACAAATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCA
TACAAATACAAGTCTCCCCCACCCCCTCCTCCAGTT
Found at i:6751164 original size:18 final size:18
Alignment explanation
Indices: 6751125--6751168 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
6751115 TGATGCACAC
*
6751125 ATTTTATTCTTTTTAGAA
1 ATTTTATTCTTATTAGAA
*
6751143 ATTTTATTCATTATTA-AT
1 ATTTTATTC-TTATTAGAA
6751161 ATTTTATT
1 ATTTTATT
6751169 TAAAATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (18 bp):
ATTTTATTCTTATTAGAA
Found at i:6753131 original size:19 final size:19
Alignment explanation
Indices: 6753107--6753144 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
6753097 CAGTAGAGGC
*
6753107 TCAACAATTTTAAAAATTT
1 TCAACAACTTTAAAAATTT
6753126 TCAACAACTTTAAAAATTT
1 TCAACAACTTTAAAAATTT
6753145 CATCTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (19 bp):
TCAACAACTTTAAAAATTT
Found at i:6753323 original size:48 final size:48
Alignment explanation
Indices: 6753126--6753525 Score: 377
Period size: 49 Copynumber: 8.3 Consensus size: 48
6753116 TTAAAAATTT
*
6753126 TCAACAACTTTAAAAATTTCATCTTGAAAAAGGCTCATCTCAGCAGAGGC
1 TCAACAACTTT-AAAATTTCATCTTGAAAAA-GCTCCTCTCAGCAGAGGC
* * ** * *
6753176 TTAACGACTTTAAAAATTTCATC-TGAAAAAGCTTTTATCAGCAAAGGC
1 TCAACAACTTT-AAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
* * * * * *
6753224 TTAACAAATTTTGAAATCTT-ATCTTGAAAAAGCTCTTTTCAGTAGAGGC
1 TCAAC-AACTTTAAAAT-TTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
* *
6753273 TCAACAACTTTAAAATTTCATCTTGGAAAAA-CTCCTCTCTGCAGAAGC
1 TCAACAACTTTAAAATTTCATCTT-GAAAAAGCTCCTCTCAGCAGAGGC
* * *
6753321 TCAACAACTAT-AAA----ATCTTGAAAATGCTCCTCTTAGCAGAGGC
1 TCAACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
* * * * *
6753364 TCAACAACTTTAAAAAAATCTCATCTTAAAAAAGCTTCTCTCAGTAGAAGC
1 TCAACAACTTT---AAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
* * * * * *
6753415 TCAATAATTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGTAGAGGC
1 TCAACAACTTT-AAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
*
6753464 TCAACAACTTTAAAAATT-ATCTTGAAAAAGCTCCTCTCAGCAGAGGC
1 TCAACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
6753511 TCAACAACTTTAAAA
1 TCAACAACTTTAAAA
6753526 ATCTCATTTG
Statistics
Matches: 289, Mismatches: 47, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
42 5 0.02
43 29 0.10
47 49 0.17
48 67 0.23
49 86 0.30
50 21 0.07
51 32 0.11
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (48 bp):
TCAACAACTTTAAAATTTCATCTTGAAAAAGCTCCTCTCAGCAGAGGC
Found at i:6753529 original size:191 final size:189
Alignment explanation
Indices: 6753146--6753525 Score: 482
Period size: 191 Copynumber: 2.0 Consensus size: 189
6753136 TAAAAATTTC
* * * * *
6753146 ATCTTGAAAAAGGCTCATCTCAGCAGAGGCTTAACGACTTTAAAAATTTCATCTGAAAAAGCTTT
1 ATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTAAAAAAGCTTC
* * * * *
6753211 TATCAGCAAAGGCTTAACAAATTTTGAAATCTTATCTTGAAAAAGCTCTTTTCAGTAGAGGCTCA
66 TATCAGCAAAGGCTCAACAAATTTTAAAATCTCATCTTGAAAAAGCTCATCTCAGTAGAGGCTCA
* *
6753276 ACAACTTTAAAATTTCATCTTGGAAAAACTCCTCTCTGCAGAAGCTCAACAACTATAAA
131 ACAACTTTAAAAATTCATCTTGGAAAAACTCCTCTCAGCAGAAGCTCAACAACTATAAA
* * *
6753335 ATCTTG-AAAATGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAAAATCTCATCTTAAAAAAGC
1 ATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTT--AAAAATCTCATC-TAAAAAAGC
* * * *
6753399 TTCTCTCAGTAGAA-GCTCAA-TAATTTTAAAAATCTCATCTTGGAAAAGCTCATCTCAGTAGAG
63 TTCTATCAGCA-AAGGCTCAACAAATTTT-AAAATCTCATCTTGAAAAAGCTCATCTCAGTAGAG
* *
6753462 GCTCAACAACTTTAAAAATT-ATCTT-GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAA
126 GCTCAACAACTTTAAAAATTCATCTTGGAAAAA-CTCCTCTCAGCAGAAGCTCAACAACTATAAA
6753525 A
1 A
6753526 ATCTCATTTG
Statistics
Matches: 164, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
188 29 0.18
189 12 0.07
190 51 0.31
191 70 0.43
192 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29
Consensus pattern (189 bp):
ATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTAAAAAAGCTTC
TATCAGCAAAGGCTCAACAAATTTTAAAATCTCATCTTGAAAAAGCTCATCTCAGTAGAGGCTCA
ACAACTTTAAAAATTCATCTTGGAAAAACTCCTCTCAGCAGAAGCTCAACAACTATAAA
Found at i:6756968 original size:46 final size:46
Alignment explanation
Indices: 6756915--6757009 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
6756905 ATATCATCCA
6756915 CATATACCTCTATTTCTTTATGCATCATGTCATGAAAGAGAGTCAC
1 CATATACCTCTATTTCTTTATGCATCATGTCATGAAAGAGAGTCAC
* *
6756961 CATATACCTTTATTTCTTTATGCATCATGTTATGAAAGAGAGTCAC
1 CATATACCTCTATTTCTTTATGCATCATGTCATGAAAGAGAGTCAC
6757007 CAT
1 CAT
6757010 TGCTCTTTGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (46 bp):
CATATACCTCTATTTCTTTATGCATCATGTCATGAAAGAGAGTCAC
Found at i:6761113 original size:39 final size:39
Alignment explanation
Indices: 6760526--6761115 Score: 751
Period size: 39 Copynumber: 15.1 Consensus size: 39
6760516 CCCTTACTCA
*
6760526 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760565 TCCCCTCCTCCTCCTAAGGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
*
6760604 TCCCCTCCACCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAG
1 T---CT---CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760649 TCCCCTCCTCCTCCTAAAGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760688 TCTCCTCCTCCTCCTAAAGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* * *
6760727 TCCCCTCCTCCTCCAAAAGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* * ***** **
6760766 TCTCCTCCACCACCT--CCTCCAG-TTTACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
6760802 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* * * ***** **
6760841 TCTCCCCCACCCCCT--CCTCCAG-TTTACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
6760877 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760916 TCTCCTCCTCCACCTAAGGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760955 TCCCCTCCTCCTCCTAAGGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
* *
6760994 TCCCCTCCTCCTCCTAAGGAGGAGCCATACAAGTACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
*
6761033 TCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
6761072 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
1 TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
6761111 TCTCC
1 TCTCC
6761116 CCCACCACCA
Statistics
Matches: 483, Mismatches: 56, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
36 49 0.10
37 4 0.01
38 4 0.01
39 389 0.81
42 2 0.00
45 35 0.07
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.19
Consensus pattern (39 bp):
TCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG
Found at i:6761429 original size:99 final size:99
Alignment explanation
Indices: 6761258--6761455 Score: 396
Period size: 99 Copynumber: 2.0 Consensus size: 99
6761248 TTCCATAAAT
6761258 ATTTTTTGCATTCAAGCTGCATTATGTCACATTTCCTTTTTTGAATTTAATGAGTTTAATGAAAA
1 ATTTTTTGCATTCAAGCTGCATTATGTCACATTTCCTTTTTTGAATTTAATGAGTTTAATGAAAA
6761323 GCTCGATGTGTTCTTGCAGGAGAAGAGAAGAGTG
66 GCTCGATGTGTTCTTGCAGGAGAAGAGAAGAGTG
6761357 ATTTTTTGCATTCAAGCTGCATTATGTCACATTTCCTTTTTTGAATTTAATGAGTTTAATGAAAA
1 ATTTTTTGCATTCAAGCTGCATTATGTCACATTTCCTTTTTTGAATTTAATGAGTTTAATGAAAA
6761422 GCTCGATGTGTTCTTGCAGGAGAAGAGAAGAGTG
66 GCTCGATGTGTTCTTGCAGGAGAAGAGAAGAGTG
6761456 TGATCCGAAT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 99 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.38
Consensus pattern (99 bp):
ATTTTTTGCATTCAAGCTGCATTATGTCACATTTCCTTTTTTGAATTTAATGAGTTTAATGAAAA
GCTCGATGTGTTCTTGCAGGAGAAGAGAAGAGTG
Found at i:6767457 original size:12 final size:13
Alignment explanation
Indices: 6767426--6767459 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6767416 TATAAACTAC
6767426 AAGGAAAAAAAGA
1 AAGGAAAAAAAGA
*
6767439 AAGGAAAAATAGA
1 AAGGAAAAAAAGA
6767452 AA-GAAAAA
1 AAGGAAAAA
6767460 GTAGCTGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (13 bp):
AAGGAAAAAAAGA
Found at i:6767593 original size:35 final size:35
Alignment explanation
Indices: 6767554--6767668 Score: 108
Period size: 35 Copynumber: 3.3 Consensus size: 35
6767544 CATAACTAGA
* *
6767554 AAATATACTACAACATAAATAAAATAGAAACCAGG
1 AAATATACTACAATAGAAATAAAATAGAAACCAGG
** * * * *
6767589 AAATATGTTGCAATAGAAATAAGAA-ACAAAAGCA-A
1 AAATATACTACAATAGAAATAA-AATA-GAAACCAGG
* *
6767624 AAATATACAACAATAGAAATAAAATAGAAACTAGG
1 AAATATACTACAATAGAAATAAAATAGAAACCAGG
6767659 AAATATACTA
1 AAATATACTA
6767669 TTATTATTAA
Statistics
Matches: 59, Mismatches: 17, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
34 6 0.10
35 46 0.78
36 7 0.12
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (35 bp):
AAATATACTACAATAGAAATAAAATAGAAACCAGG
Found at i:6768463 original size:3 final size:3
Alignment explanation
Indices: 6768455--6768497 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
6768445 GGAAAGGGCT
6768455 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6768498 CTATATCAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:6770245 original size:25 final size:26
Alignment explanation
Indices: 6770214--6770270 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
6770204 CAACAATTAT
*
6770214 TATTAAA-TTTGAAAA-AAATACTAAA
1 TATTAAATTTTCAAAATAAATA-TAAA
6770239 TATTAAATTTTCAAAATAAATATAAA
1 TATTAAATTTTCAAAATAAATATAAA
*
6770265 TCTTAA
1 TATTAA
6770271 TACTCATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 7 0.25
26 16 0.57
27 5 0.18
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (26 bp):
TATTAAATTTTCAAAATAAATATAAA
Found at i:6774138 original size:16 final size:17
Alignment explanation
Indices: 6774109--6774147 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
6774099 ATTATTAAAT
6774109 AATAAAAATAAGTAATA
1 AATAAAAATAAGTAATA
*
6774126 AATAATAAT-AGTAAT-
1 AATAAAAATAAGTAATA
6774141 AATAAAA
1 AATAAAA
6774148 TTTCAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 6 0.30
17 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (17 bp):
AATAAAAATAAGTAATA
Found at i:6774148 original size:20 final size:20
Alignment explanation
Indices: 6774104--6774146 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6774094 GGGAAATTAT
6774104 TAAATAATAAAAATAAGTAA
1 TAAATAATAAAAATAAGTAA
* *
6774124 TAAATAATAATAGTAA-TAA
1 TAAATAATAAAAATAAGTAA
6774143 TAAA
1 TAAA
6774147 ATTTCAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
TAAATAATAAAAATAAGTAA
Found at i:6774346 original size:34 final size:35
Alignment explanation
Indices: 6774289--6774355 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
6774279 AAACCCTAAG
*
6774289 TAAAACCCAAAAGCCTTAAGTGAAACCTTAAACTA
1 TAAAACCCAAAAGCCTTAAGTGAAACCCTAAACTA
* *
6774324 TAAAATCC-AAAGCCTTAGGTGAAACCCTAAAC
1 TAAAACCCAAAAGCCTTAAGTGAAACCCTAAAC
6774356 CCTAGGTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.46, C:0.24, G:0.10, T:0.19
Consensus pattern (35 bp):
TAAAACCCAAAAGCCTTAAGTGAAACCCTAAACTA
Found at i:6775241 original size:17 final size:19
Alignment explanation
Indices: 6775191--6775242 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 19
6775181 ACTCTCGAAC
*
6775191 CAAAATTTATTTTTGTAGAT
1 CAAAA-TTATTTTTTTAGAT
*
6775211 CAAAATTATCTTTTTA-AT
1 CAAAATTATTTTTTTAGAT
*
6775229 -AAACTTATTTTTTT
1 CAAAATTATTTTTTT
6775243 TATTAAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 9 0.32
20 5 0.18
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.54
Consensus pattern (19 bp):
CAAAATTATTTTTTTAGAT
Found at i:6777682 original size:20 final size:20
Alignment explanation
Indices: 6777659--6777706 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
6777649 AAGAGCTTTG
6777659 TCATTCATGAATTCATGAAT
1 TCATTCATGAATTCATGAAT
* **
6777679 TCATTCATGCATTCATGCTT
1 TCATTCATGAATTCATGAAT
6777699 TCATTCAT
1 TCATTCAT
6777707 TCATGCATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (20 bp):
TCATTCATGAATTCATGAAT
Found at i:6777691 original size:8 final size:8
Alignment explanation
Indices: 6777680--6777714 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
6777670 TTCATGAATT
6777680 CATTCATG
1 CATTCATG
6777688 CATTCATG
1 CATTCATG
* *
6777696 CTTTCATT
1 CATTCATG
6777704 CATTCATG
1 CATTCATG
6777712 CAT
1 CAT
6777715 CTATTTATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.09, T:0.43
Consensus pattern (8 bp):
CATTCATG
Found at i:6780714 original size:15 final size:15
Alignment explanation
Indices: 6780694--6780728 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
6780684 AAACATCGAC
6780694 AAAGGTCAGAACTCG
1 AAAGGTCAGAACTCG
*
6780709 AAAGGTCAGAATTCG
1 AAAGGTCAGAACTCG
6780724 AAAGG
1 AAAGG
6780729 CCATAATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (15 bp):
AAAGGTCAGAACTCG
Found at i:6781693 original size:48 final size:48
Alignment explanation
Indices: 6781639--6781736 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
6781629 TATTAGGTAC
* *
6781639 CAAATAAAAATGAAAGACAAAGAAATGCAAAACAGGTGTCAACAATAA
1 CAAATAAAAATGAAAGACAAAGAAATGCAAAACAAGTGCCAACAATAA
* * * *
6781687 CAAATAAAAATTAAAGATAGAGAAATGCAAAACAAGTGCCAAGAATAA
1 CAAATAAAAATGAAAGACAAAGAAATGCAAAACAAGTGCCAACAATAA
6781735 CA
1 CA
6781737 TGATAACATA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.13
Consensus pattern (48 bp):
CAAATAAAAATGAAAGACAAAGAAATGCAAAACAAGTGCCAACAATAA
Found at i:6783025 original size:3 final size:3
Alignment explanation
Indices: 6783019--6783072 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
6783009 ATAATAATAA
* * *
6783019 TAT TAT TAT TAT TAT TAT TGT TGT TTT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6783067 TAT TAT
1 TAT TAT
6783073 AAAACAACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:6783176 original size:22 final size:22
Alignment explanation
Indices: 6783151--6783192 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
6783141 CTAAAATAAT
6783151 ATAAATAATAT-ATAAAAAATCA
1 ATAAA-AATATAATAAAAAATCA
*
6783173 ATAAAAATATAATTAAAAAT
1 ATAAAAATATAATAAAAAAT
6783193 TAAAAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (22 bp):
ATAAAAATATAATAAAAAATCA
Found at i:6784301 original size:11 final size:12
Alignment explanation
Indices: 6784277--6784303 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6784267 TCTCTTTTTC
6784277 TTTTTAAAATTT
1 TTTTTAAAATTT
6784289 TTTTTAAAATTT
1 TTTTTAAAATTT
6784301 TTT
1 TTT
6784304 AATATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTAAAATTT
Found at i:6785285 original size:22 final size:22
Alignment explanation
Indices: 6785246--6785291 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
6785236 AACTAAATCT
* *
6785246 TACTTAATTCTAGGGATATAAA
1 TACTTAATTCTAGAGATACAAA
*
6785268 TACTTAATTCTATAGATACAAA
1 TACTTAATTCTAGAGATACAAA
6785290 TA
1 TA
6785292 TAAATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (22 bp):
TACTTAATTCTAGAGATACAAA
Found at i:6789028 original size:23 final size:23
Alignment explanation
Indices: 6788968--6789021 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
6788958 CAGGAATCGA
6788968 CAATGAAGGCCT-AAAAAGTCAG
1 CAATGAAGGCCTAAAAAAGTCAG
6788990 CAATGAAGGCCTAAAAAAGTCAG
1 CAATGAAGGCCTAAAAAAGTCAG
6789013 CAATGAAGG
1 CAATGAAGG
6789022 TTGAAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.13
Consensus pattern (23 bp):
CAATGAAGGCCTAAAAAAGTCAG
Found at i:6789193 original size:22 final size:22
Alignment explanation
Indices: 6789168--6789213 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
6789158 AACTAAATCT
6789168 TACTTAATTCTAAG-GATACAAA
1 TACTTAATT-TAAGAGATACAAA
*
6789190 TACTTAATTTTAGAGATACAAA
1 TACTTAATTTAAGAGATACAAA
6789212 TA
1 TA
6789214 TAAATATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (22 bp):
TACTTAATTTAAGAGATACAAA
Found at i:6790201 original size:16 final size:15
Alignment explanation
Indices: 6790167--6790200 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6790157 ACCAACCACG
6790167 AAAACAGAAACAAAA
1 AAAACAGAAACAAAA
*
6790182 AAAATAGAAACAAAA
1 AAAACAGAAACAAAA
6790197 AAAA
1 AAAA
6790201 AAGACAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.82, C:0.09, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAACAGAAACAAAA
Found at i:6790211 original size:17 final size:15
Alignment explanation
Indices: 6790167--6790204 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
6790157 ACCAACCACG
*
6790167 AAAACAGAAACAAAA
1 AAAAAAGAAACAAAA
*
6790182 AAAATAGAAACAAAA
1 AAAAAAGAAACAAAA
6790197 AAAAAAGA
1 AAAAAAGA
6790205 CAAACAATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.82, C:0.08, G:0.08, T:0.03
Consensus pattern (15 bp):
AAAAAAGAAACAAAA
Found at i:6790886 original size:17 final size:16
Alignment explanation
Indices: 6790844--6790886 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
6790834 AATTTTCTAA
* *
6790844 TTTTTTATATTATTAT
1 TTTTTTATTTTAGTAT
6790860 TTTTTATATTTTAAGTAT
1 TTTTT-TATTTT-AGTAT
6790878 TTTTTTATT
1 TTTTTTATT
6790887 GATGCATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 9 0.39
18 9 0.39
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTTATTTTAGTAT
Found at i:6791314 original size:16 final size:16
Alignment explanation
Indices: 6791295--6791368 Score: 69
Period size: 16 Copynumber: 4.6 Consensus size: 16
6791285 AAAATCCCTT
6791295 AAATCCAAACCCCATA
1 AAATCCAAACCCCATA
6791311 AAATCCTAAACCCC-TA
1 AAATCC-AAACCCCATA
* **
6791327 AAATCTAAAACCCCCCA
1 AAATC-CAAACCCCATA
**
6791344 AAATCCAAAATCCATA
1 AAATCCAAACCCCATA
*
6791360 AAATTCAAA
1 AAATCCAAA
6791369 GTCCTAAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
16 34 0.72
17 13 0.28
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.16
Consensus pattern (16 bp):
AAATCCAAACCCCATA
Found at i:6791320 original size:33 final size:33
Alignment explanation
Indices: 6791267--6791363 Score: 94
Period size: 32 Copynumber: 3.0 Consensus size: 33
6791257 CCTAAGTTTT
*
6791267 TAAAACCCCTAAAAAT-CTAAAATCCCTTAAATC
1 TAAAACCCCT-AAAATCCTAAAATCCCTAAAATC
* *
6791300 -CAAACCCCATAAAATCCT-AAACCCCTAAAATC
1 TAAAACCCC-TAAAATCCTAAAATCCCTAAAATC
* *
6791332 TAAAACCCCCCAAAATCC-AAAATCCATAAAAT
1 TAAAA-CCCCTAAAATCCTAAAATCCCTAAAAT
6791364 TCAAAGTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
32 24 0.46
33 24 0.46
34 4 0.08
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (33 bp):
TAAAACCCCTAAAATCCTAAAATCCCTAAAATC
Found at i:6791341 original size:17 final size:16
Alignment explanation
Indices: 6791267--6791363 Score: 81
Period size: 17 Copynumber: 5.9 Consensus size: 16
6791257 CCTAAGTTTT
6791267 TAAAACCCCTAAAAATC
1 TAAAACCCCT-AAAATC
* *
6791284 TAAAATCCCTTAAATC
1 TAAAACCCCTAAAATC
*
6791300 -CAAACCCCATAAAATCC
1 TAAAACCCC-TAAAAT-C
6791317 T-AAACCCCTAAAATC
1 TAAAACCCCTAAAATC
*
6791332 TAAAACCCCCCAAAATC
1 TAAAA-CCCCTAAAATC
* * *
6791349 CAAAATCCATAAAAT
1 TAAAACCCCTAAAAT
6791364 TCAAAGTCCT
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
15 8 0.12
16 26 0.40
17 31 0.48
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAACCCCTAAAATC
Found at i:6791348 original size:49 final size:49
Alignment explanation
Indices: 6791269--6791363 Score: 129
Period size: 49 Copynumber: 1.9 Consensus size: 49
6791259 TAAGTTTTTA
* ** *
6791269 AAACCCCTAAAAATCTAAAATCCCTTAAATCCAAACCCCATAAAATCCT
1 AAACCCCTAAAAATCTAAAACCCCCAAAATCCAAAACCCATAAAATCCT
*
6791318 AAACCCCT-AAAATCTAAAACCCCCCAAAATCCAAAATCCATAAAAT
1 AAACCCCTAAAAATCTAAAA-CCCCCAAAATCCAAAACCCATAAAAT
6791364 TCAAAGTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 11 0.28
49 29 0.73
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (49 bp):
AAACCCCTAAAAATCTAAAACCCCCAAAATCCAAAACCCATAAAATCCT
Found at i:6793472 original size:15 final size:15
Alignment explanation
Indices: 6793452--6793480 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6793442 CATGTATTGT
6793452 ATTTCATACATACAC
1 ATTTCATACATACAC
6793467 ATTTCATACATACA
1 ATTTCATACATACA
6793481 GTAGGTCCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (15 bp):
ATTTCATACATACAC
Found at i:6796312 original size:20 final size:20
Alignment explanation
Indices: 6796287--6796335 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
6796277 GAGAGCTACA
6796287 AAGAATATGCTGTTAGATGG
1 AAGAATATGCTGTTAGATGG
6796307 AAGAATATGCTGTTAGATGG
1 AAGAATATGCTGTTAGATGG
6796327 AAGAATATG
1 AAGAATATG
6796336 GCATCGTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.04, G:0.29, T:0.29
Consensus pattern (20 bp):
AAGAATATGCTGTTAGATGG
Found at i:6799085 original size:16 final size:16
Alignment explanation
Indices: 6799064--6799095 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
6799054 AATATGTTTG
6799064 ATTTTCAAGGAATTAA
1 ATTTTCAAGGAATTAA
6799080 ATTTTCAAGGAATTAA
1 ATTTTCAAGGAATTAA
6799096 TGCTTTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
ATTTTCAAGGAATTAA
Found at i:6799338 original size:33 final size:33
Alignment explanation
Indices: 6799301--6799586 Score: 273
Period size: 33 Copynumber: 8.7 Consensus size: 33
6799291 TCTGGCCTCA
*
6799301 AATGAAGTTTTAAGCACAGTTTATCTGGTCATT
1 AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
*
6799334 AATGAAGCTTTAAGCCCAGTTTATCTGGCCTCA--
1 AATGAAGTTTTAAGCCCAGTTTATCTGG--TCATT
*
6799367 AATGAAGTTTTAAACCCAGTTTATCTGGTCATT
1 AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
* * * **
6799400 ATTGAAGTTTTAAGCCCAATTTATCTGGCCAAC
1 AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
* *
6799433 AATGACA--TTTAAGCACAGTTTATCTGGCCATT
1 AATGA-AGTTTTAAGCCCAGTTTATCTGGTCATT
* * *** *
6799465 AATGAAGCTTTAAGCCCAGTTTGTCTAACCATC
1 AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
6799498 AATGAAGTTTTAAGCCCAGTTTATCTGGCCTCA--
1 AATGAAGTTTTAAGCCCAGTTTATCTGG--TCATT
* * *
6799531 AATGAGGTTTTAAGCCCAGTTTAGCTGG-CCTT
1 AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
**
6799563 CAAT-AAAATTTAAGCCCAGTTTAT
1 -AATGAAGTTTTAAGCCCAGTTTAT
6799587 TTGGCCCCAA
Statistics
Matches: 209, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
30 1 0.00
31 4 0.02
32 42 0.20
33 156 0.75
34 1 0.00
35 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (33 bp):
AATGAAGTTTTAAGCCCAGTTTATCTGGTCATT
Found at i:6799387 original size:66 final size:66
Alignment explanation
Indices: 6799276--6799586 Score: 343
Period size: 66 Copynumber: 4.8 Consensus size: 66
6799266 AAAAAAAAAA
* * *
6799276 CTTTAAGCCTAATTT-TCTGGCCTCAAATGAAGTTTTAAGCACAGTTTATCTGGTCATTAATGAA
1 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGCCCAGTTTATCTGGTCATTAATGAA
6799340 G
66 G
* *
6799341 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAACCCAGTTTATCTGGTCATTATTGAA
1 CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGCCCAGTTTATCTGGTCATTAATGAA
6799406 G
66 G
* * * * *
6799407 TTTTAAGCCCAATTTATCTGGCC-AACAATGACA--TTTAAGCACAGTTTATCTGGCCATTAATG
1 CTTTAAGCCCAGTTTATCTGGCCTCA-AATGA-AGTTTTAAGCCCAGTTTATCTGGTCATTAATG
6799469 AAG
64 AAG
* **
6799472 CTTTAAGCCCAGTTTGTCTAACCATC-AATGAAGTTTTAAGCCCAGTTTATCTGGCCTCA--AAT
1 CTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGTTTTAAGCCCAGTTTATCTGG--TCATTAAT
*
6799534 GAGG
63 GAAG
* * **
6799538 TTTTAAGCCCAGTTTAGCTGGCCTTC-AAT-AAAATTTAAGCCCAGTTTAT
1 CTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGTTTTAAGCCCAGTTTAT
6799587 TTGGCCCCAA
Statistics
Matches: 208, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
64 1 0.00
65 83 0.40
66 121 0.58
67 1 0.00
68 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (66 bp):
CTTTAAGCCCAGTTTATCTGGCCTCAAATGAAGTTTTAAGCCCAGTTTATCTGGTCATTAATGAA
G
Found at i:6799516 original size:131 final size:130
Alignment explanation
Indices: 6799309--6799592 Score: 383
Period size: 131 Copynumber: 2.2 Consensus size: 130
6799299 CAAATGAAGT
* **
6799309 TTTAAGCACAGTTTATCTGGTCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCTCAAATGAAG
1 TTTAAGCACAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTAACCTCAAATGAAG
* * *
6799374 TTTTAAACCCAGTTTATCTGG-TCATTATTGAAGTTTTAAGCCCAATTTATCTGGCCAACAATGA
66 TTTTAAACCCAGTTTATCTGGCTCA--AATGAAGTTTTAAGCCCAATTTAGCTGGCCAACAATAA
*
6799438 CA
129 AA
*
6799440 TTTAAGCACAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTGTCTAACCATC-AATGAA
1 TTTAAGCACAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTAACC-TCAAATGAA
* * * **
6799504 GTTTTAAGCCCAGTTTATCTGGCCTCAAATGAGGTTTTAAGCCCAGTTTAGCTGGCCTTCAATAA
65 GTTTTAAACCCAGTTTATCTGG-CTCAAATGAAGTTTTAAGCCCAATTTAGCTGGCCAACAATAA
6799569 AA
129 AA
* *
6799571 TTTAAGCCCAGTTTATTTGGCC
1 TTTAAGCACAGTTTATCTGGCC
6799593 CCAAAAAAAG
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
131 130 0.96
132 2 0.01
133 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (130 bp):
TTTAAGCACAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTAACCTCAAATGAAG
TTTTAAACCCAGTTTATCTGGCTCAAATGAAGTTTTAAGCCCAATTTAGCTGGCCAACAATAAAA
Found at i:6800425 original size:121 final size:122
Alignment explanation
Indices: 6800115--6800437 Score: 504
Period size: 122 Copynumber: 2.7 Consensus size: 122
6800105 AAAAAATTTA
* *
6800115 AAATTTTTAAAATTTCATTGCCTCTGATTATGAGGAGCATTCAAAGATTTTGAGATTTGTAAGAC
1 AAATTTTTAAAGTTTCATTGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTAAGAC
* * *
6800180 CTTCGGGCATAATCTTCAAAAGTCTCTGCACACGACTTTCAAGATTAAAAGATTTTT
66 CTCCGGGCATAATCTTCAAAAGCCTCTGCACACGACTTTCAAGATTAAAAGATTTTC
* *
6800237 AAATTTTTAAAGTTTCATTGTCTCTGATTATAAGAAGCATTCAAAGATTTTGAGATTTGTAAGAC
1 AAATTTTTAAAGTTTCATTGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTAAGAC
* ** *
6800302 CTCCGGGCATAATCTTTAAAAGCCTCTGCGTATGACTTTCAAGATTAAAAGATTTTC
66 CTCCGGGCATAATCTTCAAAAGCCTCTGCACACGACTTTCAAGATTAAAAGATTTTC
** *
6800359 AAA-TTTTAAAGTTTCACCGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTATGAC
1 AAATTTTTAAAGTTTCATTGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTAAGAC
*
6800423 CTCCGGGTATAATCT
66 CTCCGGGCATAATCT
6800438 CTACGACCTC
Statistics
Matches: 184, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
121 70 0.38
122 114 0.62
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.36
Consensus pattern (122 bp):
AAATTTTTAAAGTTTCATTGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTAAGAC
CTCCGGGCATAATCTTCAAAAGCCTCTGCACACGACTTTCAAGATTAAAAGATTTTC
Found at i:6800448 original size:22 final size:21
Alignment explanation
Indices: 6800420--6800516 Score: 96
Period size: 19 Copynumber: 4.7 Consensus size: 21
6800410 AGATTTGTAT
*
6800420 GACCTCCGGGTATAATCTCTA
1 GACCTCCGGGCATAATCTCTA
6800441 CGACCTCCGGGCATAA--TCTA
1 -GACCTCCGGGCATAATCTCTA
6800461 GACCTCCGGGCATAA--TCTA
1 GACCTCCGGGCATAATCTCTA
* *
6800480 GACCTCCGGACATAA-CTTTTAA
1 GACCTCCGGGCATAATC-TCT-A
*
6800502 GAACTCCGGGCATAA
1 GACCTCCGGGCATAA
6800517 ATTCAATTCG
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
19 33 0.49
20 4 0.06
21 2 0.03
22 28 0.42
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (21 bp):
GACCTCCGGGCATAATCTCTA
Found at i:6800466 original size:19 final size:19
Alignment explanation
Indices: 6800420--6800494 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
6800410 AGATTTGTAT
*
6800420 GACCTCCGGGTATAATCTCTA
1 GACCTCCGGGCATAA--TCTA
6800441 CGACCTCCGGGCATAATCTA
1 -GACCTCCGGGCATAATCTA
6800461 GACCTCCGGGCATAATCTA
1 GACCTCCGGGCATAATCTA
*
6800480 GACCTCCGGACATAA
1 GACCTCCGGGCATAA
6800495 CTTTTAAGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
19 33 0.65
20 4 0.08
22 14 0.27
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (19 bp):
GACCTCCGGGCATAATCTA
Found at i:6800723 original size:23 final size:23
Alignment explanation
Indices: 6800692--6800763 Score: 135
Period size: 23 Copynumber: 3.1 Consensus size: 23
6800682 ATTCCAATCA
*
6800692 ATTCTGTAAGACCTTCAGGCATG
1 ATTCGGTAAGACCTTCAGGCATG
6800715 ATTCGGTAAGACCTTCAGGCATG
1 ATTCGGTAAGACCTTCAGGCATG
6800738 ATTCGGTAAGACCTTCAGGCATG
1 ATTCGGTAAGACCTTCAGGCATG
6800761 ATT
1 ATT
6800764 TGAACCGGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (23 bp):
ATTCGGTAAGACCTTCAGGCATG
Found at i:6800728 original size:111 final size:111
Alignment explanation
Indices: 6800499--6800717 Score: 293
Period size: 110 Copynumber: 2.0 Consensus size: 111
6800489 ACATAACTTT
* * * *
6800499 TAAGAACTCCGGGCATAAATTCAATTCGTGGTGTTATCCCGATCGATTTCTTTATCTTTTGACTT
1 TAAGACCTCCGGGCATAAATTCAATTCGCGGTGTTATCCCGATCGAATTCTTTATCTTTTAACTT
* *
6800564 GTAGTGTTATCCCAGTCAATTCTGTAAGACTTCTGGGCATGATTTC
66 GTAGTGTTATCCCAATCAATTCTGTAAGACTTCTAGGCATGATTTC
* * *
6800610 TAAGACCTCTGGGCATAAATTCGATTCGCGGTGTTATCCCGATC-AATTCTTTAT-TTTTCAATT
1 TAAGACCTCCGGGCATAAATTCAATTCGCGGTGTTATCCCGATCGAATTCTTTATCTTTT-AACT
*
6800673 TGT-GATGTTATTCCAATCAATTCTGTAAGACCTTC-AGGCATGATT
65 TGTAG-TGTTATCCCAATCAATTCTGTAAGA-CTTCTAGGCATGATT
6800718 CGGTAAGACC
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
109 5 0.05
110 46 0.48
111 44 0.46
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (111 bp):
TAAGACCTCCGGGCATAAATTCAATTCGCGGTGTTATCCCGATCGAATTCTTTATCTTTTAACTT
GTAGTGTTATCCCAATCAATTCTGTAAGACTTCTAGGCATGATTTC
Found at i:6801360 original size:17 final size:17
Alignment explanation
Indices: 6801340--6801443 Score: 119
Period size: 17 Copynumber: 6.4 Consensus size: 17
6801330 AAAACCTCTA
* *
6801340 AAAATCTAAAATCCCTT
1 AAAATCCAAAATCCCCT
6801357 AAAA-CC-AAA-CCCCAT
1 AAAATCCAAAATCCCC-T
*
6801372 AAAATCCGAAA-CCCCT
1 AAAATCCAAAATCCCCT
* *
6801388 AAAATCCAAAACCCCCC
1 AAAATCCAAAATCCCCT
6801405 AAAATCCAAAATCCCCT
1 AAAATCCAAAATCCCCT
6801422 AAAATCCAAAAT-CCCT
1 AAAATCCAAAATCCCCT
6801438 AAAATC
1 AAAATC
6801444 TAAAGTCCTA
Statistics
Matches: 77, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
14 3 0.04
15 8 0.10
16 24 0.31
17 42 0.55
ACGTcount: A:0.49, C:0.35, G:0.01, T:0.15
Consensus pattern (17 bp):
AAAATCCAAAATCCCCT
Found at i:6801375 original size:33 final size:33
Alignment explanation
Indices: 6801330--6801443 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 33
6801320 CTAAGTTTTT
* * *
6801330 AAAACCTCTAAAAATCTAAAATCCCTTAAAA-CC
1 AAAACCCCT-AAAATCCAAAATCCCCTAAAATCC
*
6801363 -AAACCCCATAAAATCCGAAA-CCCCTAAAATCC
1 AAAACCCC-TAAAATCCAAAATCCCCTAAAATCC
*
6801395 AAAACCCCCCAAAATCCAAAATCCCCTAAAATCC
1 AAAA-CCCCTAAAATCCAAAATCCCCTAAAATCC
*
6801429 AAAATCCCTAAAATC
1 AAAACCCCTAAAATC
6801444 TAAAGTCCTA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
31 8 0.12
32 17 0.25
33 23 0.34
34 20 0.29
ACGTcount: A:0.49, C:0.34, G:0.01, T:0.16
Consensus pattern (33 bp):
AAAACCCCTAAAATCCAAAATCCCCTAAAATCC
Found at i:6801455 original size:15 final size:16
Alignment explanation
Indices: 6801340--6801456 Score: 105
Period size: 17 Copynumber: 7.2 Consensus size: 16
6801330 AAAACCTCTA
*
6801340 AAAATCTAAAATCCCTT
1 AAAATCCAAAATCCC-T
*
6801357 AAAA-CC-AAACCCCAT
1 AAAATCCAAAATCCC-T
* *
6801372 AAAATCCGAAACCCCT
1 AAAATCCAAAATCCCT
* *
6801388 AAAATCCAAAACCCCCC
1 AAAATCCAAAA-TCCCT
6801405 AAAATCCAAAATCCCCT
1 AAAATCCAAAAT-CCCT
6801422 AAAATCCAAAATCCCT
1 AAAATCCAAAATCCCT
* *
6801438 AAAATCTAAAGT-CCT
1 AAAATCCAAAATCCCT
6801453 AAAA
1 AAAA
6801457 AATCCTAAGG
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
15 18 0.21
16 28 0.32
17 41 0.47
ACGTcount: A:0.50, C:0.32, G:0.02, T:0.16
Consensus pattern (16 bp):
AAAATCCAAAATCCCT
Found at i:6806719 original size:75 final size:75
Alignment explanation
Indices: 6806651--6807095 Score: 374
Period size: 75 Copynumber: 5.7 Consensus size: 75
6806641 CTCCACCACC
* *
6806651 TTACAAGTACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCAC
1 TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCAC
6806716 CTCCTCCAGT
66 CTCCTCCAGT
* *
6806726 TTACAAATACAAGTCTCCCCCTCCTCCTCCCAAGGAGGAACCATACAAATACAAGTCTCCTCCAC
1 TTACAAATACAAGTCT---CCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCAC
6806791 CACCTCCTCCAGT
63 CACCTCCTCCAGT
* *
6806804 TTACAAATACAAGTCCCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCAC
1 TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCA-
*
6806869 CTCCTCCTCCTAAGGAGGAGCC
65 --CCTCCTCC--------AG-T
* * * ******* ** * *
6806891 ATACAAATACAAGTCTCCCCCGCC-CC-CTCCTCCAG-TTTACAAATACAAGTCTCCTCCTCCTC
1 TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCAC
** *
6806953 CTCCTAAGGAGGAGCC
66 CTCCT-----CCAG-T
* * * * * * * *
6806969 ATACAGATACAAGCCTCTTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCC
1 TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCAC
6807034 CTCCTCCAGT
66 CTCCTCCAGT
* *
6807044 TTACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCATACAGATACAAG
1 TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAG
6807096 CCTCTTCCTC
Statistics
Matches: 296, Mismatches: 51, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
75 107 0.36
76 2 0.01
78 103 0.35
79 2 0.01
80 2 0.01
81 33 0.11
84 21 0.07
85 2 0.01
86 4 0.01
87 20 0.07
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.20
Consensus pattern (75 bp):
TTACAAATACAAGTCTCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCTCCACCAC
CTCCTCCAGT
Found at i:6806731 original size:36 final size:36
Alignment explanation
Indices: 6806691--6806824 Score: 135
Period size: 36 Copynumber: 3.6 Consensus size: 36
6806681 GGAGGAGCCA
6806691 TACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
1 TACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
* * * * **
6806727 TACAAATACAAGTCTCCCCCTCCTCCTCC-CAAGGAGGAACCA
1 TACAAATACAAGTCTCCTCCACCACCTCCTC---CA-G---TT
6806769 TACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
1 TACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
*
6806805 TACAAATACAAGTCCCCTCC
1 TACAAATACAAGTCTCCTCC
6806825 TCCTCCAAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
35 1 0.01
36 45 0.58
38 1 0.01
39 2 0.03
40 1 0.01
42 26 0.34
43 1 0.01
ACGTcount: A:0.30, C:0.41, G:0.07, T:0.22
Consensus pattern (36 bp):
TACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
Found at i:6806736 original size:42 final size:40
Alignment explanation
Indices: 6806690--6806815 Score: 111
Period size: 42 Copynumber: 3.1 Consensus size: 40
6806680 AGGAGGAGCC
6806690 ATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTT---
1 ATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTTAAA
* * * * *
6806727 -TACAAATACAAGTCTCCCCCTCCTCCTCC-CAAG-GAGGAA
1 ATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTTA--AA
6806766 CCATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTTTACAA
1 --ATACAAATACAAGTCTCCTCCACCACCTCCTCCAG-TTA-AA
6806810 ATACAA
1 ATACAA
6806816 GTCCCCTCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 17
0.71 0.12 0.18
Matches are distributed among these distances:
35 3 0.04
36 26 0.39
42 32 0.48
43 3 0.04
44 2 0.03
45 1 0.01
ACGTcount: A:0.33, C:0.39, G:0.07, T:0.21
Consensus pattern (40 bp):
ATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTTAAA
Found at i:6806884 original size:48 final size:48
Alignment explanation
Indices: 6806820--6806923 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
6806810 ATACAAGTCC
6806820 CCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
1 CCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
* * *
6806868 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCC
1 CCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
6806916 CCTCCTCC
1 CCTCCTCC
6806924 AGTTTACAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.26, C:0.45, G:0.12, T:0.16
Consensus pattern (48 bp):
CCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
Found at i:6806899 original size:123 final size:123
Alignment explanation
Indices: 6806745--6807346 Score: 844
Period size: 123 Copynumber: 5.0 Consensus size: 123
6806735 CAAGTCTCCC
* * * * *
6806745 CCTCCTCCTCCCAAGGAGGAACCATACAAATACAAGTCTCCTCCACCACCTCCTCCAGTTTACAA
1 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
*
6806810 ATACAAGTCCCCTCCTCCTCCAAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
66 ATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
6806868 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
1 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
* *
6806933 ATACAAGTCTCCTCCTCCTCCTCCTAAGGAGGAGCCATACAGATACAAG---------CCT
66 ATACAAG--TCC-CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
*
6806985 CTTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
1 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
* * *
6807050 ATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCATACAGATACAAG---------CCT
66 ATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
* * * * * *
6807099 CTTCCTCCTCCTAAGGAGGAACCATATAAATACAAGTCTCCTCCACCACCTCCTCCAGTTTACAA
1 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
* *
6807164 ATACAAGTCCCCTCCTCCTCCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCA
66 ATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
*
6807222 CCTCCTCCACCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
1 CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
* *
6807287 ATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCATATAAATACAAGTCTCCCCCACCA
66 ATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
6807345 CC
1 CC
6807347 ACCACCCCAT
Statistics
Matches: 436, Mismatches: 31, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
114 141 0.32
115 2 0.00
117 73 0.17
123 183 0.42
125 3 0.01
126 34 0.08
ACGTcount: A:0.29, C:0.40, G:0.12, T:0.20
Consensus pattern (123 bp):
CCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCCCCTCCTCCAGTTTACAA
ATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCACCA
Found at i:6807141 original size:36 final size:37
Alignment explanation
Indices: 6806947--6807142 Score: 144
Period size: 39 Copynumber: 5.2 Consensus size: 37
6806937 AAGTCTCCTC
* *
6806947 CTCCTCCTCCTAAGGAGGAGCCATACAGATACAAGCCT
1 CTCCTCCTCCTAAGGAGGAACCATACAAATACAAG-CT
*
6806985 CTTCCTCCTCCTAAGGAGGAGCCATACAAATACAAG-T
1 C-TCCTCCTCCTAAGGAGGAACCATACAAATACAAGCT
* * ********* ***
6807022 CTCCCCCGCCCCCTCCTCCAGTTTACAAATACAAGTCT
1 CTCCTCCTCCTAAGGAGGAACCATACAAATACAAG-CT
* *
6807060 CCTCCTCCTCCTAAGGAGGAGCCATACAGATACAAGCCT
1 -CTCCTCCTCCTAAGGAGGAACCATACAAATACAAG-CT
*
6807099 CTTCCTCCTCCTAAGGAGGAACCATATAAATACAAG-T
1 C-TCCTCCTCCTAAGGAGGAACCATACAAATACAAGCT
6807136 CTCCTCC
1 CTCCTCC
6807143 ACCACCTCCT
Statistics
Matches: 117, Mismatches: 36, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
36 25 0.21
37 4 0.03
38 3 0.03
39 85 0.73
ACGTcount: A:0.28, C:0.36, G:0.14, T:0.21
Consensus pattern (37 bp):
CTCCTCCTCCTAAGGAGGAACCATACAAATACAAGCT
Found at i:6807168 original size:75 final size:75
Alignment explanation
Indices: 6807084--6807230 Score: 215
Period size: 75 Copynumber: 2.0 Consensus size: 75
6807074 GGAGGAGCCA
* * * * * *
6807084 TACAGATACAAG-CCTCTTCCTCCTCCTAAGGAGGAACCATATAAATACAAGTCTCCTCCACCAC
1 TACAAATACAAGTCC-CCTCCTCCTCCAAAGGACGAACCATACAAATACAAGTCTCCCCCACCAC
6807148 CTCCTCCAGTT
65 CTCCTCCAGTT
*
6807159 TACAAATACAAGTCCCCTCCTCCTCCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCACC
1 TACAAATACAAGTCCCCTCCTCCTCCAAAGGACGAACCATACAAATACAAGTCTCCCCCACCACC
6807224 TCCTCCA
66 TCCTCCA
6807231 CCTAAGGAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
75 62 0.97
76 2 0.03
ACGTcount: A:0.31, C:0.39, G:0.10, T:0.20
Consensus pattern (75 bp):
TACAAATACAAGTCCCCTCCTCCTCCAAAGGACGAACCATACAAATACAAGTCTCCCCCACCACC
TCCTCCAGTT
Found at i:6807245 original size:48 final size:48
Alignment explanation
Indices: 6807174--6807278 Score: 165
Period size: 48 Copynumber: 2.2 Consensus size: 48
6807164 ATACAAGTCC
*
6807174 CCTCCTCCTCCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCA
1 CCTCCTCCACCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCA
* * * *
6807222 CCTCCTCCACCTAAGGAGGAGCCATACAAATACAAGTCTCCCCCGCCC
1 CCTCCTCCACCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCA
6807270 CCTCCTCCA
1 CCTCCTCCA
6807279 GTTTACAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.28, C:0.46, G:0.11, T:0.15
Consensus pattern (48 bp):
CCTCCTCCACCAAAGGACGAGCCATACAAATACAAGTCTCCCCCACCA
Found at i:6811083 original size:25 final size:26
Alignment explanation
Indices: 6811055--6811103 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6811045 TATTTTGAAG
6811055 ACTTATTTG-AAAAGATTTTTTTTAA
1 ACTTATTTGAAAAAGATTTTTTTTAA
*
6811080 ACTTATTTGAAAAAGCTTTTTTTT
1 ACTTATTTGAAAAAGATTTTTTTT
6811104 TCTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (26 bp):
ACTTATTTGAAAAAGATTTTTTTTAA
Found at i:6811167 original size:11 final size:11
Alignment explanation
Indices: 6811153--6811193 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
6811143 TAAAATTTCT
6811153 CAAAAATAAAA
1 CAAAAATAAAA
6811164 CAAAAATAAAA
1 CAAAAATAAAA
*
6811175 TAAAAATTAAAA
1 CAAAAA-TAAAA
*
6811187 CTAAAAT
1 CAAAAAT
6811194 GAGTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (11 bp):
CAAAAATAAAA
Found at i:6811185 original size:23 final size:22
Alignment explanation
Indices: 6811154--6811229 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 22
6811144 AAAATTTCTC
6811154 AAAAATAAAACAAAAATAAAAT
1 AAAAATAAAACAAAAATAAAAT
* *
6811176 AAAAATTAAAACTAAAATGAGTTAA-
1 AAAAA-TAAAACAAAAAT-A--AAAT
*
6811201 AAAAATAAAACAATCAAATCAAAT
1 AAAAATAAAACAA--AAATAAAAT
6811225 AAAAA
1 AAAAA
6811230 AATAAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
22 5 0.12
23 13 0.31
24 13 0.31
25 5 0.12
26 6 0.14
ACGTcount: A:0.74, C:0.07, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAAATAAAACAAAAATAAAAT
Found at i:6811691 original size:20 final size:20
Alignment explanation
Indices: 6811663--6811715 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
6811653 AATTCTCTAA
* *
6811663 AAACTTAAATCAAAACCCAT
1 AAACCTAAATCAAAACCCAG
6811683 AAACCTAAAATC-AAACCCAG
1 AAACCT-AAATCAAAACCCAG
*
6811703 AATCCTTAAATCA
1 AAACC-TAAATCA
6811716 CGCCCAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.53, C:0.26, G:0.02, T:0.19
Consensus pattern (20 bp):
AAACCTAAATCAAAACCCAG
Found at i:6811695 original size:21 final size:21
Alignment explanation
Indices: 6811669--6811715 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
6811659 CTAAAAACTT
*
6811669 AAATCAAAACCCATAAACCTA
1 AAATCAAAACCCAGAAACCTA
* *
6811690 AAATC-AAACCCAGAATCCTT
1 AAATCAAAACCCAGAAACCTA
6811710 AAATCA
1 AAATCA
6811716 CGCCCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.17
Consensus pattern (21 bp):
AAATCAAAACCCAGAAACCTA
Found at i:6812118 original size:3 final size:3
Alignment explanation
Indices: 6812087--6812155 Score: 95
Period size: 3 Copynumber: 23.3 Consensus size: 3
6812077 GGAAGAAAGA
* * * *
6812087 AAT AAA AAT AAT AAA AAT AAT GAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6812135 AAT AAT AAT AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
6812156 CTATACAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
2 2 0.03
3 57 0.97
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6812411 original size:32 final size:31
Alignment explanation
Indices: 6812375--6812488 Score: 92
Period size: 31 Copynumber: 3.6 Consensus size: 31
6812365 ATCACAAGTC
* *
6812375 TAAAAATGAAATGACTAGGATCGAGTCGAGGT
1 TAAAAAT-AAATAACTAAGATCGAGTCGAGGT
6812407 TAAAAATAAATAACTAAGA-CGA-TC-ACGAGT
1 TAAAAATAAATAACTAAGATCGAGTCGA-G-GT
* * *
6812437 CAAAAAATGAAATAACCAAGATTGAGTCGAGGT
1 -TAAAAAT-AAATAACTAAGATCGAGTCGAGGT
* *
6812470 T-AAAATAAATGACTCAGAT
1 TAAAAATAAATAACTAAGAT
6812489 GAAACCACAA
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
28 1 0.02
29 3 0.05
30 15 0.23
31 21 0.32
32 18 0.27
33 4 0.06
34 3 0.05
35 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.21
Consensus pattern (31 bp):
TAAAAATAAATAACTAAGATCGAGTCGAGGT
Found at i:6812647 original size:120 final size:120
Alignment explanation
Indices: 6812430--6812892 Score: 416
Period size: 120 Copynumber: 3.9 Consensus size: 120
6812420 CTAAGACGAT
* ** * *
6812430 CACGAGTCAAAAAATGAAA-TAACCAAGATTGAGTCGAGGT-TAAAATAAATGACTC-AGATGAA
1 CACGAGTC-AAAAAT-AAAGTGACCAAGACCGAGTCGAGGTCGAGAATAAATGA-TCGAGATGAA
* * * *
6812492 ACCACAAGTCATAAAAAATGTTTTGGATTGAGCCAAGATCAAGTGACTGAGATAAAAC
63 ACCACAAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAAGTGACTGAGATAAAAC
* ** * * *
6812550 CACAAGTCAAAAATAAAGTGATTAGGATCGAGTCGAGGTCGAGAATAAATTATCGAGATGAAACC
1 CACGAGTCAAAAATAAAGTGACCAAGACCGAGTCGAGGTCGAGAATAAATGATCGAGATGAAACC
* * * * * *
6812615 ACAAGTCATAAAAAATGATCTAGACTGTGCCAAAATCACGTGACCGAGATGAAAT
66 ACAAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAAGTGACTGAGATAAAAC
* * * * *
6812670 CACGAGTCAAAAATAAAGCGACCAAGACCAAATCAAGGTCGAGAATAAATGATCGAGATGAAATC
1 CACGAGTCAAAAATAAAGTGACCAAGACCGAGTCGAGGTCGAGAATAAATGATCGAGATGAAACC
** * * * * *
6812735 ATGAGTCATAAGAAATGATCCAGACTAAGCCGAGATCAAGTGA-TCAAGATAAAAC
66 ACAAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAAGTGACT-GAGATAAAAC
* * ** * * * * *
6812790 CACGAGTCAAAAATAAAGTAACCAAAATTGAGTCAAGGTTGAAAATAAAT-AACTGAGATGAAGC
1 CACGAGTCAAAAATAAAGTGACCAAGACCGAGTCGAGGTCGAGAATAAATGATC-GAGATGAAAC
* * * * *
6812854 CACGAGT-TTGAAAAATAATCTAGACTAAGCCAAGATCAA
65 CACAAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAA
6812893 AATGAGTAAC
Statistics
Matches: 276, Mismatches: 62, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
118 3 0.01
119 52 0.19
120 221 0.80
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (120 bp):
CACGAGTCAAAAATAAAGTGACCAAGACCGAGTCGAGGTCGAGAATAAATGATCGAGATGAAACC
ACAAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAAGTGACTGAGATAAAAC
Found at i:6813213 original size:9 final size:9
Alignment explanation
Indices: 6813199--6813223 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6813189 CACAAAAAGA
6813199 AAGATTCGT
1 AAGATTCGT
6813208 AAGATTCGT
1 AAGATTCGT
6813217 AAGATTC
1 AAGATTC
6813224 CAAATTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (9 bp):
AAGATTCGT
Found at i:6813377 original size:86 final size:85
Alignment explanation
Indices: 6813232--6813600 Score: 335
Period size: 86 Copynumber: 4.4 Consensus size: 85
6813222 TCCAAATTTT
* ** * * * *
6813232 GCAAAGATGCAAGGTTCGTAAAGACTCTCAAATTCATAAGAAAGAAAGATTTACAAGATTTCAAG
1 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAA-AAAAAAAGATTTACAAGATTTCAAG
*
6813297 TTTCGCAAAGGTTCTAGATTC
65 TTTCGCAAAGATTCTAGATTC
*
6813318 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAAAAAATAAAGATTCT-CAAGATTCCAA
1 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAAAAAA-AAAGATT-TACAAGATTTCAA
** *
6813382 GTTTCATAAAAATTCTAGATTC
64 GTTTCGCAAAGATTCTAGATTC
** ** *
6813404 ATAAAGATGCAAGATTCGTAAGAACTTTCAAATTCACAAGAAAAAAAGATTTACAAGATTTCAAG
1 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAA-AAAAAAAGATTTACAAGATTTCAAG
* * * *
6813469 TTTCGTAAAGATTTTAAACTC
65 TTTCGCAAAGATTCTAGATTC
* * * ** * *
6813490 GCAAAGAT----G-----CAAGGACTTTTAGATTCACAAAAAAAAATATTCGCAAGATTACGAGT
1 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAAAAAAAAAGATTTACAAGATTTCAAGT
* * *
6813546 TTAGCAAAGGTTCTAGATTT
66 TTCGCAAAGATTCTAGATTC
* *
6813566 GCAAAGATGCTAGATTCACAAGGATTTTCAAATTC
1 GCAAAGATGCAAGATTCACAAGGACTTTCAAATTC
6813601 GTAAGAAAAA
Statistics
Matches: 226, Mismatches: 44, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
76 42 0.19
77 17 0.08
80 1 0.00
82 1 0.00
85 18 0.08
86 142 0.63
87 5 0.02
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (85 bp):
GCAAAGATGCAAGATTCACAAGGACTTTCAAATTCACAAAAAAAAAGATTTACAAGATTTCAAGT
TTCGCAAAGATTCTAGATTC
Found at i:6814910 original size:18 final size:18
Alignment explanation
Indices: 6814884--6814922 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
6814874 ACCCCATCAA
*
6814884 TTTTCTTTTTCTTTTTTT
1 TTTTCTTTTGCTTTTTTT
*
6814902 TTTTTTTTTGCTTTTTTT
1 TTTTCTTTTGCTTTTTTT
6814920 TTT
1 TTT
6814923 GTGGAGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (18 bp):
TTTTCTTTTGCTTTTTTT
Found at i:6814923 original size:12 final size:11
Alignment explanation
Indices: 6814884--6814922 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
6814874 ACCCCATCAA
6814884 TTTTCTTTTTCT
1 TTTTCTTTTT-T
*
6814896 TTTTTTTTTTT
1 TTTTCTTTTTT
6814907 TTTTGCTTTTTT
1 TTTT-CTTTTTT
6814919 TTTT
1 TTTT
6814923 GTGGAGCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:6817893 original size:25 final size:25
Alignment explanation
Indices: 6817864--6817911 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
6817854 TAAATAAATC
6817864 ATTAAGAAAATATA-AGCAATGAATA
1 ATTAAGAAAATATATA-CAATGAATA
* *
6817889 ATTAAGTAAGTATATACAATGAA
1 ATTAAGAAAATATATACAATGAA
6817912 AAGGAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.56, C:0.04, G:0.12, T:0.27
Consensus pattern (25 bp):
ATTAAGAAAATATATACAATGAATA
Found at i:6817926 original size:37 final size:36
Alignment explanation
Indices: 6817885--6817964 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 36
6817875 ATAAGCAATG
* *
6817885 AATAATTAAGTAAGTATATA-CAATGAAAAGGAAAATA
1 AATAATTAAGCAAATATA-AGCAATGAAAAGGAAAA-A
* * *
6817922 AATAATAAAGCAAATATAAGCAATGAAAGGGAATAA
1 AATAATTAAGCAAATATAAGCAATGAAAAGGAAAAA
6817958 AATAATT
1 AATAATT
6817965 TCAAATTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
36 8 0.22
37 28 0.78
ACGTcount: A:0.60, C:0.04, G:0.14, T:0.23
Consensus pattern (36 bp):
AATAATTAAGCAAATATAAGCAATGAAAAGGAAAAA
Found at i:6819319 original size:21 final size:21
Alignment explanation
Indices: 6819295--6819335 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6819285 CCTAGATTTT
6819295 CCAAACTTTTC-CAAATTTCTC
1 CCAAA-TTTTCTCAAATTTCTC
*
6819316 CCAAATTTTCTCAGATTTCT
1 CCAAATTTTCTCAAATTTCT
6819336 TCAAAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.27, C:0.29, G:0.02, T:0.41
Consensus pattern (21 bp):
CCAAATTTTCTCAAATTTCTC
Found at i:6819401 original size:20 final size:21
Alignment explanation
Indices: 6819354--6819403 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
6819344 TCTCTAGAAA
6819354 CTTAAATCAAACCCCAAAAAC
1 CTTAAATCAAACCCCAAAAAC
* * *
6819375 CTAAAATCAAA-CCTAAAATC
1 CTTAAATCAAACCCCAAAAAC
6819395 CTTAAATCA
1 CTTAAATCA
6819404 CTCCCAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (21 bp):
CTTAAATCAAACCCCAAAAAC
Found at i:6819412 original size:20 final size:20
Alignment explanation
Indices: 6819357--6819414 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
6819347 CTAGAAACTT
6819357 AAATCAAACCCCAAAAACCTA
1 AAATCAAA-CCCAAAAACCTA
* * *
6819378 AAATCAAACCTAAAATCCTT
1 AAATCAAACCCAAAAACCTA
**
6819398 AAATCACTCCCAAAAAC
1 AAATCAAACCCAAAAAC
6819415 TTCAAATCGA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 22 0.73
21 8 0.27
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (20 bp):
AAATCAAACCCAAAAACCTA
Found at i:6819784 original size:3 final size:3
Alignment explanation
Indices: 6819776--6819869 Score: 97
Period size: 3 Copynumber: 32.3 Consensus size: 3
6819766 AGAAGCAAGA
6819776 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
6819823 AAT ACT ATAC AAT -AT ATT AAT -AT GAT AAT AAC AAA AAT AAT AA-
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6819866 AAT A
1 AAT A
6819870 CAATCCAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
2 8 0.11
3 67 0.88
4 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6820418 original size:22 final size:23
Alignment explanation
Indices: 6820370--6820417 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
6820360 AAACTTTAAG
*
6820370 AAAATACCAAATATAAAAACTAA
1 AAAATACCAAATATAAAAACAAA
6820393 AAAATACC-AATAT-AAAACAAA
1 AAAATACCAAATATAAAAACAAA
6820414 AAAA
1 AAAA
6820418 AAAAACCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
22 5 0.21
23 8 0.33
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (23 bp):
AAAATACCAAATATAAAAACAAA
Found at i:6820418 original size:23 final size:23
Alignment explanation
Indices: 6820370--6820419 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
6820360 AAACTTTAAG
**
6820370 AAAATACCAAATATAAAAACTAA
1 AAAATACCAAATATAAAAAAAAA
6820393 AAAATACC-AATATAAAACAAAAA
1 AAAATACCAAATATAAAA-AAAAA
6820416 AAAA
1 AAAA
6820420 AAACCTATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (23 bp):
AAAATACCAAATATAAAAAAAAA
Found at i:6821849 original size:32 final size:32
Alignment explanation
Indices: 6821808--6821871 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
6821798 GCAGAGAGGG
6821808 ACTTACTTCTAAGTATTCATATTCGGAACTTA
1 ACTTACTTCTAAGTATTCATATTCGGAACTTA
6821840 ACTTACTTCTAAGTATTCATATTCGGAACTTA
1 ACTTACTTCTAAGTATTCATATTCGGAACTTA
6821872 CTTCTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (32 bp):
ACTTACTTCTAAGTATTCATATTCGGAACTTA
Found at i:6823441 original size:35 final size:35
Alignment explanation
Indices: 6823402--6823468 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
6823392 CAAAAACTAG
*
6823402 GAAATATACTATAGCAAAAACATGAAATAGAATCA
1 GAAATATACTACAGCAAAAACATGAAATAGAATCA
* * * *
6823437 GAAATATATTGCAGCAGAAACATGAAGTAGAA
1 GAAATATACTACAGCAAAAACATGAAATAGAA
6823469 AATGGTGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.19
Consensus pattern (35 bp):
GAAATATACTACAGCAAAAACATGAAATAGAATCA
Found at i:6824704 original size:7 final size:7
Alignment explanation
Indices: 6824692--6824722 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
6824682 GAGGAATTAT
6824692 TAAATAA
1 TAAATAA
6824699 TAAATAA
1 TAAATAA
6824706 TAAATAA
1 TAAATAA
6824713 TAAATAA
1 TAAATAA
6824720 TAA
1 TAA
6824723 TAGTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAATAA
Found at i:6826864 original size:26 final size:27
Alignment explanation
Indices: 6826810--6826864 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
6826800 TATGTGGGAC
* *
6826810 ATTTGGATGCAATTTGTGTTTAAGGTA
1 ATTTGGATGCAACTTGTGTTTAAGCTA
*
6826837 ATTT-GATGCAACTTGTGTTTATGCTA
1 ATTTGGATGCAACTTGTGTTTAAGCTA
6826863 AT
1 AT
6826865 AGTGTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (27 bp):
ATTTGGATGCAACTTGTGTTTAAGCTA
Found at i:6828315 original size:12 final size:12
Alignment explanation
Indices: 6828298--6828352 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
6828288 AAGAGCTTTG
*
6828298 TCATTCGTGCAT
1 TCATTCATGCAT
*
6828310 TCATTCATTCAT
1 TCATTCATGCAT
6828322 TCATTCATGCA-
1 TCATTCATGCAT
*
6828333 TCATGCACT-CAT
1 TCATTCA-TGCAT
6828345 TCATTCAT
1 TCATTCAT
6828353 TTATCCATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 9 0.25
12 27 0.75
ACGTcount: A:0.24, C:0.27, G:0.07, T:0.42
Consensus pattern (12 bp):
TCATTCATGCAT
Found at i:6828316 original size:4 final size:4
Alignment explanation
Indices: 6828307--6828353 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
6828297 GTCATTCGTG
* * *
6828307 CATT CATT CATT CATT CATT CATG CA-T CATG CACT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT
6828354 TATCCATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
3 2 0.06
4 34 0.94
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.43
Consensus pattern (4 bp):
CATT
Found at i:6837122 original size:9 final size:10
Alignment explanation
Indices: 6837108--6837132 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6837098 TTAGAAAATA
6837108 TTTTTTATTT
1 TTTTTTATTT
6837118 TTTTTTATTT
1 TTTTTTATTT
6837128 TTTTT
1 TTTTT
6837133 CTTGTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:6837235 original size:12 final size:12
Alignment explanation
Indices: 6837220--6837266 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
6837210 AATAATATAA
*
6837220 AAAATGAAAACT
1 AAAATCAAAACT
6837232 AAAAAT-ATAAACT
1 -AAAATCA-AAACT
*
6837245 AAAATCAAAAAT
1 AAAATCAAAACT
6837257 AAAATCAAAA
1 AAAATCAAAA
6837267 AATAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 20 0.65
13 11 0.35
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (12 bp):
AAAATCAAAACT
Found at i:6837267 original size:13 final size:13
Alignment explanation
Indices: 6837244--6837285 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
6837234 AAATATAAAC
6837244 TAAAATC-AAAAA
1 TAAAATCAAAAAA
6837256 TAAAATCAAAAAA
1 TAAAATCAAAAAA
6837269 TAAAAT-AAAAAA
1 TAAAATCAAAAAA
*
6837281 GAAAA
1 TAAAA
6837286 AAGAAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (13 bp):
TAAAATCAAAAAA
Found at i:6838103 original size:3 final size:3
Alignment explanation
Indices: 6838095--6838134 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
6838085 AAAAATTAAA
*
6838095 AAT AAT AAT AAT AAT AAAT AAT -AT AAT AAT AAT ACT AAT A
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT A
6838135 GACTACAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6838122 original size:5 final size:5
Alignment explanation
Indices: 6838096--6838306 Score: 127
Period size: 5 Copynumber: 38.6 Consensus size: 5
6838086 AAAATTAAAA
* * *
6838096 ATAAT AATAAT AATAA- ATAAT ATAAT AATAAT ACTAAT AGACT ACAAT
1 ATAAT -ATAAT -ATAAT ATAAT ATAAT -ATAAT A-TAAT ATAAT ATAAT
* * * *
6838144 ATAAT ATACT ATACT ATACTAT ACAAT ATACTAT GATAAT ACTAAT ATACT
1 ATAAT ATAAT ATAAT ATA--AT ATAAT ATA--AT -ATAAT A-TAAT ATAAT
* * *
6838195 ATACT ATAAT AATAAT AATAATAT ATAAT AACAAT AACAAT AATAAT AATAAT
1 ATAAT ATAAT -ATAAT -AT-A-AT ATAAT -ATAAT -ATAAT -ATAAT -ATAAT
* *
6838248 ATAAT ATAAT ATAAT AATAAT ATAAT ATAAT ATAAT ATAAT ACAAT ATAGT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
6838299 ATACT ATA
1 ATAAT ATA
6838307 GTAATGTAAT
Statistics
Matches: 174, Mismatches: 17, Indels: 29
0.79 0.08 0.13
Matches are distributed among these distances:
4 4 0.02
5 95 0.55
6 62 0.36
7 8 0.05
8 5 0.03
ACGTcount: A:0.57, C:0.07, G:0.01, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:6838127 original size:24 final size:24
Alignment explanation
Indices: 6838095--6838289 Score: 105
Period size: 21 Copynumber: 8.4 Consensus size: 24
6838085 AAAAATTAAA
6838095 AATAATAATAATAATAAATAATAT
1 AATAATAATAATAATAAATAATAT
* *
6838119 AATAATAATACTAATAGACTACAATAT
1 AATAATAATAATAATA-A--ATAATAT
* * *
6838146 AAT-ATACTATACTATACTATACAATAT
1 AATAATA--ATA--ATAATAAATAATAT
* * * *
6838173 ACT-ATGATAATACTAATATACTAT
1 AATAATAATAATAATAA-ATAATAT
*
6838197 ACT-ATAATAATAAT-AATAATAT
1 AATAATAATAATAATAAATAATAT
* *
6838219 -ATAATAACAATAA-CAAT-A-AT
1 AATAATAATAATAATAAATAATAT
6838239 AATAATAAT-ATAAT--ATAATAT
1 AATAATAATAATAATAAATAATAT
6838260 AATAATAAT-ATAAT--ATAATAT
1 AATAATAATAATAATAAATAATAT
6838281 AAT-ATAATA
1 AATAATAATA
6838290 CAATATAGTA
Statistics
Matches: 140, Mismatches: 16, Indels: 33
0.74 0.08 0.17
Matches are distributed among these distances:
19 2 0.01
20 12 0.09
21 35 0.25
22 18 0.13
23 7 0.05
24 32 0.23
25 4 0.03
26 3 0.02
27 20 0.14
28 3 0.02
30 4 0.03
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (24 bp):
AATAATAATAATAATAAATAATAT
Found at i:6838196 original size:31 final size:30
Alignment explanation
Indices: 6838158--6838281 Score: 113
Period size: 31 Copynumber: 4.3 Consensus size: 30
6838148 TATACTATAC
* *
6838158 TATACTATACAATATACTATGATAATACTAA
1 TATACTATACAATATAC-ATAATAATAATAA
6838189 TATACTATAC--TATA-ATAATAATAATAA
1 TATACTATACAATATACATAATAATAATAA
6838216 TATA-TAATAACAATA-ACAATAATAATAATAA
1 TATACT-AT-ACAATATAC-ATAATAATAATAA
*
6838247 TATA--ATATAATATA-ATAATAAT-ATAA
1 TATACTATACAATATACATAATAATAATAA
*
6838273 TATAATATA
1 TATACTATA
6838282 ATATAATACA
Statistics
Matches: 81, Mismatches: 3, Indels: 21
0.77 0.03 0.20
Matches are distributed among these distances:
26 9 0.11
27 25 0.31
28 10 0.12
29 8 0.10
30 2 0.02
31 27 0.33
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.35
Consensus pattern (30 bp):
TATACTATACAATATACATAATAATAATAA
Found at i:6838208 original size:3 final size:3
Alignment explanation
Indices: 6838200--6838289 Score: 104
Period size: 3 Copynumber: 32.0 Consensus size: 3
6838190 ATACTATACT
* *
6838200 ATA ATA ATA ATA ATA ATA TATA ATA ACA ATA ACA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
6838246 AT- ATA AT- ATA AT- ATA ATA ATA AT- ATA AT- ATA AT- ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6838287 ATA
1 ATA
6838290 CAATATAGTA
Statistics
Matches: 75, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
2 14 0.19
3 58 0.77
4 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6838834 original size:55 final size:55
Alignment explanation
Indices: 6838672--6838854 Score: 167
Period size: 55 Copynumber: 3.4 Consensus size: 55
6838662 GACTGAGCTG
* * * *
6838672 CAAGTCAAAAAAATGATCTGTACTGAA-CCAAGATCG-ATGATCGAGATAGAACCA
1 CAAGTCAAAAAAATGATCTGGACT-AAGCCAAGATTGAATGATTGGGATAGAACCA
* * * * * * *
6838726 TAAGTCTGAAAAAA-GA-CTAGATTAAGCCAAGATTAAATGATTAGGATTGAACCA
1 CAAGTC-AAAAAAATGATCTGGACTAAGCCAAGATTGAATGATTGGGATAGAACCA
* * * *
6838780 CAAGTCTAAAAAATGATCTGGACTAAGCCAAGTTTGAATGATTGGGACAAAACCA
1 CAAGTCAAAAAAATGATCTGGACTAAGCCAAGATTGAATGATTGGGATAGAACCA
* *
6838835 TAGGTCAAAAAAATGATCTG
1 CAAGTCAAAAAAATGATCTG
6838855 AACTGAGCTA
Statistics
Matches: 100, Mismatches: 24, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
52 2 0.02
53 17 0.17
54 28 0.28
55 53 0.53
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (55 bp):
CAAGTCAAAAAAATGATCTGGACTAAGCCAAGATTGAATGATTGGGATAGAACCA
Found at i:6838902 original size:55 final size:55
Alignment explanation
Indices: 6838843--6838957 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 55
6838833 CATAGGTCAA
* *
6838843 AAAAATGATCT-GAACTGAGCTAAAATCGAATGACCAAGATGAAATCATGAGTCTG
1 AAAAATGATCTAG-ACTGAGCTAAAATCAAATGACCAAGACGAAATCATGAGTCTG
* * *** *
6838898 AAAAATGATCTAGACTTAGCTAAGATCAAATGGTTAAGACGAAATCATGAGTTTG
1 AAAAATGATCTAGACTGAGCTAAAATCAAATGACCAAGACGAAATCATGAGTCTG
6838953 AAAAA
1 AAAAA
6838958 CGAATATCGA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 50 0.98
56 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.23
Consensus pattern (55 bp):
AAAAATGATCTAGACTGAGCTAAAATCAAATGACCAAGACGAAATCATGAGTCTG
Found at i:6839801 original size:18 final size:17
Alignment explanation
Indices: 6839779--6839821 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
6839769 TTAAGTCTTC
* *
6839779 ATTTTTTCTCTTTTTTCT
1 ATTTTTTTTATTTTTT-T
6839797 -TTTTTTTTATTTTTTT
1 ATTTTTTTTATTTTTTT
6839813 ATTTTTTTT
1 ATTTTTTTT
6839822 TTCACATCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (17 bp):
ATTTTTTTTATTTTTTT
Found at i:6840141 original size:12 final size:13
Alignment explanation
Indices: 6840124--6840156 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6840114 CTCCTTCATT
6840124 TTTTTTC-CTTTC
1 TTTTTTCTCTTTC
*
6840136 TTTTTTCTCTTTT
1 TTTTTTCTCTTTC
6840149 TTTTTTCT
1 TTTTTTCT
6840157 TTTTTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTCTCTTTC
Found at i:6840141 original size:13 final size:13
Alignment explanation
Indices: 6840122--6840162 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
6840112 CTCTCCTTCA
6840122 TTTTTTTTC-CTT
1 TTTTTTTTCTCTT
*
6840134 TCTTTTTTCTCTT
1 TTTTTTTTCTCTT
6840147 TTTTTTTTCT-TT
1 TTTTTTTTCTCTT
6840159 TTTT
1 TTTT
6840163 ATCATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTCTCTT
Found at i:6844635 original size:25 final size:26
Alignment explanation
Indices: 6844585--6844634 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
6844575 AATTAATCAA
6844585 GAAAATTCAGTAAAATAAATAAAAAT
1 GAAAATTCAGTAAAATAAATAAAAAT
*
6844611 GAAAATTCAG-AATATAAACTAAAA
1 GAAAATTCAGTAAAATAAA-TAAAA
6844635 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (26 bp):
GAAAATTCAGTAAAATAAATAAAAAT
Found at i:6844642 original size:26 final size:26
Alignment explanation
Indices: 6844586--6844640 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
6844576 ATTAATCAAG
*
6844586 AAAATTCAGTAAAATAAATAAAAATG
1 AAAATTCAGTAAAATAAATAAAAATA
*
6844612 AAAATTCAG-AATATAAACT-AAAATA
1 AAAATTCAGTAAAATAAA-TAAAAATA
6844637 AAAA
1 AAAA
6844641 ATAAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (26 bp):
AAAATTCAGTAAAATAAATAAAAATA
Found at i:6845502 original size:3 final size:3
Alignment explanation
Indices: 6845494--6845574 Score: 111
Period size: 3 Copynumber: 29.0 Consensus size: 3
6845484 CTATATTATG
6845494 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6845541 ATA AT- ACA AT- ATA ATA AT- ATA AT- ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6845575 TATCATACTA
Statistics
Matches: 70, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
2 11 0.16
3 59 0.84
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6845586 original size:15 final size:15
Alignment explanation
Indices: 6845420--6845576 Score: 92
Period size: 18 Copynumber: 10.1 Consensus size: 15
6845410 AAGGAAAGAA
6845420 AATA-AATA-AATAAT
1 AATATAATATAAT-AT
*
6845434 AATATAATAATAATACC
1 AATATAAT-ATAATA-T
* *
6845451 AATAGACTATAATAT
1 AATATAATATAATAT
* * *
6845466 AATATATTGTACTAT
1 AATATAATATAATAT
*
6845481 -ATACT-ATATTATGAT
1 AATA-TAATATAAT-AT
6845496 AATAATAATAATAATAAT
1 AAT-ATAAT-ATAAT-AT
6845514 AATAATAATAATAATAAT
1 AAT-ATAAT-ATAAT-AT
*
6845532 AATAATAATATAATAC
1 AAT-ATAATATAATAT
6845548 AATAT-A-ATAATAT
1 AATATAATATAATAT
6845561 AATATAATATAATAT
1 AATATAATATAATAT
6845576 A
1 A
6845577 TCATACTATA
Statistics
Matches: 115, Mismatches: 16, Indels: 23
0.75 0.10 0.15
Matches are distributed among these distances:
13 11 0.10
14 12 0.10
15 27 0.23
16 15 0.13
17 17 0.15
18 33 0.29
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (15 bp):
AATATAATATAATAT
Found at i:6846232 original size:39 final size:39
Alignment explanation
Indices: 6846178--6846619 Score: 413
Period size: 39 Copynumber: 11.4 Consensus size: 39
6846168 TCCACCACCT
* *
6846178 TACAAGTACAAGTCTCCTTCTCCTCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
6846217 TACAAATACAAGTCTCCTCCTCCTCCTCCAAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCT---AAGGAGGAGCCA
*
6846259 TACAAATACATGTCTCCTCCTCCTCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
* * * ***** **
6846298 TACAAATACAAGTCTCCCCCACCACCT--TCTCCAG-TT
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
*
6846334 TACAAATACAAGTCCCCTCCTCCTCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
* *
6846373 TACAAATTCAAGTCTCCTCCTCCCCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
* * * ***** **
6846412 TACAAATACAAGTCTCCCCCGCCCCCT--CCTCCAG-TT
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
6846448 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
* *
6846487 TACAAATACAAGCCTCTTCCTCCTCCTAAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
* * ** **
6846526 TACAAATACAAGTCTCCCCCACCCCTCCT--CCA--A--TT
1 TACAAATACAAGTCT-CCTC-CTCCTCCTAAGGAGGAGCCA
*
6846561 TACAAATACAAGTCCCCTCCTCCTCCTAAGGAGGAGGAGCCA
1 TACAAATACAAGTCTCCTCCTCCTCCT-A--AGGAGGAGCCA
6846603 TACAAATACAAGTCTCC
1 TACAAATACAAGTCTCC
6846620 CCCACCACCA
Statistics
Matches: 317, Mismatches: 66, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
33 7 0.02
34 3 0.01
35 14 0.04
36 47 0.15
37 5 0.02
38 5 0.02
39 172 0.54
40 3 0.01
41 7 0.02
42 54 0.17
ACGTcount: A:0.29, C:0.36, G:0.13, T:0.21
Consensus pattern (39 bp):
TACAAATACAAGTCTCCTCCTCCTCCTAAGGAGGAGCCA
Done.