Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 29 of 138
Found at i:7036134 original size:29 final size:29
Alignment explanation
Indices: 7036098--7036156 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
7036088 ACAACTTTAA
* * *
7036098 AAAAATAAGTGATAACTTAGTAGTTAACT
1 AAAAATAAATAATAACTTAATAGTTAACT
7036127 AAAAATAAATAATAACTTAATAGTTAACT
1 AAAAATAAATAATAACTTAATAGTTAACT
7036156 A
1 A
7036157 TTGATAACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (29 bp):
AAAAATAAATAATAACTTAATAGTTAACT
Found at i:7036185 original size:22 final size:22
Alignment explanation
Indices: 7036121--7036197 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
7036111 AACTTAGTAG
*
7036121 TTAACTAA-AAATAAATAATAAC
1 TTAA-TAATAAATCAATAATAAC
* * * *
7036143 TTAATAGTTAA-CTATTGATAAC
1 TTAATAATAAATC-AATAATAAC
7036165 TTAATAATAAATCAATAATAA-
1 TTAATAATAAATCAATAATAAC
*
7036186 TTAATAGTAAAT
1 TTAATAATAAAT
7036198 TTGTGATAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
21 13 0.31
22 28 0.67
23 1 0.02
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (22 bp):
TTAATAATAAATCAATAATAAC
Found at i:7036205 original size:43 final size:43
Alignment explanation
Indices: 7036121--7036452 Score: 131
Period size: 43 Copynumber: 7.8 Consensus size: 43
7036111 AACTTAGTAG
* *
7036121 TTAACTAA-AAATAAATAATAACTTAATAGTTAACTATTGATAAC
1 TTAA-TAATAAATCAATAATAACTTAATAG-TAAATATTGATAAC
* *
7036165 TTAATAATAAATCAATAATAA-TTAATAGTAAATTTGTGATAAT
1 TTAATAATAAATCAATAATAACTTAATAGTAAATAT-TGATAAC
* ** * * *
7036208 TTAATAGTAAATCAATTTTAATTTAATAGT--AT-TTAATTGA-
1 TTAATAATAAATCAATAATAACTTAATAGTAAATATTGA-TAAC
* * * *
7036248 -TAATAGTAAATC-ATAAATAACTTCATGGTAAATCAATT-ATAAA
1 TTAATAATAAATCAAT-AATAACTTAATAGTAAAT--ATTGATAAC
* * * * * * * *
7036291 TTAGTAATAAAT-AATTGATGATTTAGTAATTAATTATTGAAAAC
1 TTAATAATAAATCAA-TAATAACTTAAT-AGTAAATATTGATAAC
* * *
7036335 TTAAAAATAAATCAAT-ATAACTTAGTAATAAATTATCT-ATAA-
1 TTAATAATAAATCAATAATAACTTAATAGTAAA-TAT-TGATAAC
* * * * *
7036377 TATAATAGTTAA-CAGTGATAACTTAATAGTAAAGTA-TGTATAAT
1 T-TAATAATAAATCAATAATAACTTAATAGTAAA-TATTG-ATAAC
* *
7036421 TTAAT-AT-AATTAATAATAACTTGATAGTAAAT
1 TTAATAATAAATCAATAATAACTTAATAGTAAAT
7036453 CACAAATAAT
Statistics
Matches: 217, Mismatches: 46, Indels: 53
0.69 0.15 0.17
Matches are distributed among these distances:
38 2 0.01
39 21 0.10
40 2 0.01
41 9 0.04
42 35 0.16
43 83 0.38
44 58 0.27
45 7 0.03
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (43 bp):
TTAATAATAAATCAATAATAACTTAATAGTAAATATTGATAAC
Found at i:7036251 original size:22 final size:23
Alignment explanation
Indices: 7036138--7036251 Score: 80
Period size: 22 Copynumber: 5.2 Consensus size: 23
7036128 AAAATAAATA
* * *
7036138 ATAACTTAATAGTTAA-CTATTG
1 ATAATTTAATAGTAAATCAATTG
* * *
7036160 ATAACTTAATAATAAATCAA-TA
1 ATAATTTAATAGTAAATCAATTG
*
7036182 ATAA-TTAATAGTAAAT--TTGTG
1 ATAATTTAATAGTAAATCAAT-TG
7036203 ATAATTTAATAGTAAATCAATT-
1 ATAATTTAATAGTAAATCAATTG
* * *
7036225 TTAATTTAATAGT-ATTTAATTG
1 ATAATTTAATAGTAAATCAATTG
7036247 ATAAT
1 ATAAT
7036252 AGTAAATCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
21 22 0.30
22 47 0.64
23 3 0.04
24 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.42
Consensus pattern (23 bp):
ATAATTTAATAGTAAATCAATTG
Found at i:7036301 original size:22 final size:22
Alignment explanation
Indices: 7036276--7036367 Score: 66
Period size: 22 Copynumber: 4.2 Consensus size: 22
7036266 AACTTCATGG
7036276 TAAATCAATT-ATAAATTAGTAA
1 TAAAT-AATTGATAAATTAGTAA
* *
7036298 TAAATAATTGATGATTTAGTAA
1 TAAATAATTGATAAATTAGTAA
* * **
7036320 TTAATTATTGA-AAACTTAAAAA
1 TAAATAATTGATAAA-TTAGTAA
*
7036342 TAAATCAA-T-ATAACTTAGTAA
1 TAAAT-AATTGATAAATTAGTAA
7036363 TAAAT
1 TAAAT
7036368 TATCTATAAT
Statistics
Matches: 53, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
21 16 0.30
22 36 0.68
23 1 0.02
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (22 bp):
TAAATAATTGATAAATTAGTAA
Found at i:7039191 original size:17 final size:17
Alignment explanation
Indices: 7039171--7039203 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7039161 ATTTTAATTA
7039171 TTTA-TAAATATAATATT
1 TTTATTAAAT-TAATATT
7039188 TTTATTAAATTAATAT
1 TTTATTAAATTAATAT
7039204 ATTAAATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATTAAATTAATATT
Found at i:7039310 original size:16 final size:15
Alignment explanation
Indices: 7039284--7039315 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
7039274 TTAATAAGAG
7039284 ATTTTAAAAAGCAAA
1 ATTTTAAAAAGCAAA
7039299 ATTTTGAAAAAGCAAA
1 ATTTT-AAAAAGCAAA
7039315 A
1 A
7039316 AAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (15 bp):
ATTTTAAAAAGCAAA
Found at i:7042177 original size:17 final size:16
Alignment explanation
Indices: 7042134--7042177 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
7042124 AAATAAGAAG
7042134 ACATAAAACAGTATAC
1 ACATAAAACAGTATAC
7042150 ACACTAAAACAGTACTA-
1 ACA-TAAAACAGTA-TAC
7042167 ACATAATAACA
1 ACATAA-AACA
7042178 ACATATTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.24
17 17 0.68
18 2 0.08
ACGTcount: A:0.57, C:0.20, G:0.05, T:0.18
Consensus pattern (16 bp):
ACATAAAACAGTATAC
Found at i:7044460 original size:14 final size:14
Alignment explanation
Indices: 7044441--7044475 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
7044431 CATTTACACC
7044441 CCCACCCCCTCTTT
1 CCCACCCCCTCTTT
7044455 CCCACCCCCTCTTT
1 CCCACCCCCTCTTT
7044469 CCCACCC
1 CCCACCC
7044476 ACTCATCCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.09, C:0.69, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCACCCCCTCTTT
Found at i:7052489 original size:20 final size:21
Alignment explanation
Indices: 7052447--7052489 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7052437 CATTCACTCA
* * *
7052447 TAATTTTTATTATTTCAATAT
1 TAATTTTCATAATTTCAAAAT
7052468 TAATTTTCATAATTT-AAAAT
1 TAATTTTCATAATTTCAAAAT
7052488 TA
1 TA
7052490 TCTTATTAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTTTCATAATTTCAAAAT
Found at i:7054353 original size:16 final size:17
Alignment explanation
Indices: 7054323--7054354 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7054313 TTTCTAATAA
7054323 TCAATTTCATTATATTT
1 TCAATTTCATTATATTT
7054340 TCAATTTC-TTATATT
1 TCAATTTCATTATATT
7054355 CAGATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.59
Consensus pattern (17 bp):
TCAATTTCATTATATTT
Found at i:7058848 original size:33 final size:30
Alignment explanation
Indices: 7058811--7058900 Score: 83
Period size: 33 Copynumber: 2.8 Consensus size: 30
7058801 ACAAGTGATC
*
7058811 AAATTATATCCAAACAATAAAAAATAAAGAATT
1 AAATTATAT-CAAA-AATAAAAAATAAA-AATA
* *
7058844 AAATTATAT-TAAAATAATAAATAAAAATA
1 AAATTATATCAAAAATAAAAAATAAAAATA
*
7058873 AAATTATATTCAAATAATGAAACAATAA
1 AAATTATA-TCAAA-AAT-AAAAAATAA
7058901 TAAAGTAGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 11 0.23
30 13 0.28
31 4 0.09
32 3 0.06
33 16 0.34
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (30 bp):
AAATTATATCAAAAATAAAAAATAAAAATA
Found at i:7058887 original size:29 final size:29
Alignment explanation
Indices: 7058826--7058904 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 29
7058816 ATATCCAAAC
* *
7058826 AATAAAAAATAAAGAATTAAATTATATTAA
1 AATAATAAATAAA-AATAAAATTATATTAA
*
7058856 AATAATAAATAAAAATAAAATTATATTCA
1 AATAATAAATAAAAATAAAATTATATTAA
* *
7058885 AATAATGAAACAATAATAAA
1 AATAAT-AAATAAAAATAAA
7058905 GTAGTGGTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 20 0.47
30 23 0.53
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
AATAATAAATAAAAATAAAATTATATTAA
Found at i:7061759 original size:24 final size:24
Alignment explanation
Indices: 7061723--7061768 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7061713 ACACATATTG
*
7061723 AATTAATTGACTATTCCTAAAACC
1 AATTAATTGACTATCCCTAAAACC
* *
7061747 AATTCATTTACTATCCCTAAAA
1 AATTAATTGACTATCCCTAAAA
7061769 TTGACCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (24 bp):
AATTAATTGACTATCCCTAAAACC
Found at i:7067019 original size:17 final size:17
Alignment explanation
Indices: 7066997--7067030 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
7066987 TTTGCATAAA
7066997 TTTTTTTGTT-TTTATT
1 TTTTTTTGTTGTTTATT
7067013 TTTTTTTGTTGTTTATT
1 TTTTTTTGTTGTTTATT
7067030 T
1 T
7067031 AGTAGTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (17 bp):
TTTTTTTGTTGTTTATT
Found at i:7070120 original size:14 final size:15
Alignment explanation
Indices: 7070101--7070130 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7070091 CCAAGAGAAG
7070101 ATCAAG-TAAAAAAA
1 ATCAAGTTAAAAAAA
7070115 ATCAAGTTAAAAAAA
1 ATCAAGTTAAAAAAA
7070130 A
1 A
7070131 GATAGGGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (15 bp):
ATCAAGTTAAAAAAA
Found at i:7072320 original size:18 final size:18
Alignment explanation
Indices: 7072287--7072321 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7072277 TCCCAATTAT
* *
7072287 TTAATTTAAGTGTTTTAG
1 TTAATTTAAATATTTTAG
7072305 TTAATTTAAATATTTTA
1 TTAATTTAAATATTTTA
7072322 ATATTAGACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
TTAATTTAAATATTTTAG
Found at i:7074346 original size:11 final size:11
Alignment explanation
Indices: 7074332--7074366 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7074322 TTTTTTAATC
7074332 TTTTTGGAATT
1 TTTTTGGAATT
*
7074343 TTTTCTAGAATT
1 TTTT-TGGAATT
7074355 TTTTTGGAATT
1 TTTTTGGAATT
7074366 T
1 T
7074367 CCTGTTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.20, C:0.03, G:0.14, T:0.63
Consensus pattern (11 bp):
TTTTTGGAATT
Found at i:7074529 original size:24 final size:23
Alignment explanation
Indices: 7074496--7074540 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7074486 AGTTTGAGGG
7074496 AGAGAAACAAAGAAAAGAAAAGGA
1 AGAGAAACAAAGAAAA-AAAAGGA
*
7074520 AGAGAGACAAAGAAAAAAAAG
1 AGAGAAACAAAGAAAAAAAAG
7074541 AAATCTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.71, C:0.04, G:0.24, T:0.00
Consensus pattern (23 bp):
AGAGAAACAAAGAAAAAAAAGGA
Found at i:7083549 original size:21 final size:22
Alignment explanation
Indices: 7083516--7083570 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
7083506 ATTGTGAGTA
* *
7083516 ATTTTTTTATG-TTATTTTATTT
1 ATTTTATTATGTTTA-TTCATTT
7083538 ATTTTATT-TGTTTATTCATTT
1 ATTTTATTATGTTTATTCATTT
7083559 A-TTTACTTATGT
1 ATTTTA-TTATGT
7083571 ACTATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 4 0.14
21 11 0.39
22 13 0.46
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.71
Consensus pattern (22 bp):
ATTTTATTATGTTTATTCATTT
Found at i:7085193 original size:23 final size:23
Alignment explanation
Indices: 7085167--7085211 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7085157 AATTTGAGTA
*
7085167 TTTCTTTTCTTTTC-TTTTTCATC
1 TTTCATTT-TTTTCATTTTTCATC
7085190 TTTCATTTTTTTCATTTTTCAT
1 TTTCATTTTTTTCATTTTTCAT
7085212 ATCAGTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTCATTTTTTTCATTTTTCATC
Found at i:7085200 original size:16 final size:16
Alignment explanation
Indices: 7085181--7085211 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7085171 TTTTCTTTTC
7085181 TTTTTCATCTTTCATT
1 TTTTTCATCTTTCATT
*
7085197 TTTTTCATTTTTCAT
1 TTTTTCATCTTTCAT
7085212 ATCAGTTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCATCTTTCATT
Found at i:7088433 original size:17 final size:17
Alignment explanation
Indices: 7088402--7088435 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7088392 TTCTTAATTA
**
7088402 TTTAATTTATCTATTTT
1 TTTAATTTAAATATTTT
7088419 TTTAATTTAAATATTTT
1 TTTAATTTAAATATTTT
7088436 AATATTAGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTAATTTAAATATTTT
Found at i:7091483 original size:16 final size:17
Alignment explanation
Indices: 7091458--7091497 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
7091448 AAGCGTTAAA
7091458 AAAAAGAATGAAAAATG
1 AAAAAGAATGAAAAATG
7091475 AAAAA-AATGAAAAATG
1 AAAAAGAATGAAAAATG
7091491 AAAAAGA
1 AAAAAGA
7091498 TAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (17 bp):
AAAAAGAATGAAAAATG
Found at i:7091503 original size:16 final size:16
Alignment explanation
Indices: 7091458--7091516 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
7091448 AAGCGTTAAA
7091458 AAAAAGAATGAAAAATG
1 AAAAAG-ATGAAAAATG
*
7091475 AAAAAAATGAAAAATG
1 AAAAAGATGAAAAATG
7091491 AAAAAGAT-AAAAA--
1 AAAAAGATGAAAAATG
*
7091504 AAAATGATGAAAA
1 AAAAAGATGAAAA
7091517 GGAGAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
13 7 0.18
14 4 0.11
15 5 0.13
16 17 0.45
17 5 0.13
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.12
Consensus pattern (16 bp):
AAAAAGATGAAAAATG
Found at i:7091513 original size:22 final size:20
Alignment explanation
Indices: 7091455--7091531 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 20
7091445 ACAAAGCGTT
7091455 AAAAAAAAGAATGAAAAATGAA
1 AAAAAAAAG-ATGAAAAA-GAA
*
7091477 AAAAATGAAAAATGAAAAAGATA
1 AAAAA--AAAGATGAAAAAGA-A
7091500 AAAAAAAATGATGAAAAGGAGAA
1 AAAAAAAA-GATGAAAA--AGAA
7091523 AAAAGAAAA
1 AAAA-AAAA
7091532 ACTTAAATAG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
21 3 0.07
22 14 0.30
23 19 0.41
24 10 0.22
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (20 bp):
AAAAAAAAGATGAAAAAGAA
Found at i:7091531 original size:29 final size:26
Alignment explanation
Indices: 7091475--7091532 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 26
7091465 ATGAAAAATG
* * *
7091475 AAAAAAATGAAAAATGAAAAAGATAA
1 AAAAAAATGAAAAAGGAAAAAAAGAA
7091501 AAAAAAATGATGAAAAGGAGAAAAAAGAA
1 AAAAAAATGA--AAAAGGA-AAAAAAGAA
7091530 AAA
1 AAA
7091533 CTTAAATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 10 0.38
28 6 0.23
29 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (26 bp):
AAAAAAATGAAAAAGGAAAAAAAGAA
Found at i:7092720 original size:32 final size:32
Alignment explanation
Indices: 7092563--7092963 Score: 172
Period size: 32 Copynumber: 12.6 Consensus size: 32
7092553 TTAGACCTAG
* * * *
7092563 TCATTTTCATCCTTGGCTCAGTCTCGTCATTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* ** *
7092595 TCACTTTCGACTTTGGCTTAGT-TGGTCACTTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCA-TTT
* * * *
7092627 T-ATTTTTAACTTTGGCTTAGTCCGGTAAATT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* * ***
7092658 TCATTTTCAACCTTGGTTTAGTCCAATCATTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* *
7092690 TCATTTTTAACCTTGTCTCAGTCTGGTCATTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* ** * * * *
7092722 TCATTTTTGATTTTGACTCAAT-TCGGTTACTTT
1 TCATTTTTAACCTTGGCTTAGTCT-GGTCA-TTT
* ***
7092755 T-ATTTTTGACCTTGGCTTAGTCCATTCATTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* * *
7092786 TCATTTTTGACTTTGGCTTAGTCTGGTTATTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
* ** ** * * * *
7092818 TCATTATCGATTTTGGCTCAATTTGGTTACTTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTCA-TTT
* * *
7092851 T-ATTTTTTACCTTGGCTTAGTTTGG-CTGTTT
1 TCATTTTTAACCTTGGCTTAGTCTGGTC-ATTT
* * **
7092882 TCATTTTTTAA-TTTGG-TTCAATCCAGTCATTT
1 TCA-TTTTTAACCTTGGCTT-AGTCTGGTCATTT
* * * *
7092914 TCATTTTTGACCTTGACTCAATC-GGATCATTT
1 TCATTTTTAACCTTGGCTTAGTCTGG-TCATTT
* *
7092946 CCATTTTTGACCTTGGCT
1 TCATTTTTAACCTTGGCT
7092964 CAATCTAGTC
Statistics
Matches: 278, Mismatches: 75, Indels: 32
0.72 0.19 0.08
Matches are distributed among these distances:
31 43 0.15
32 219 0.79
33 16 0.06
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (32 bp):
TCATTTTTAACCTTGGCTTAGTCTGGTCATTT
Found at i:7092767 original size:96 final size:96
Alignment explanation
Indices: 7092667--7092871 Score: 302
Period size: 96 Copynumber: 2.1 Consensus size: 96
7092657 TTCATTTTCA
* * * *
7092667 ACCTTGGTTTAGTCCAATCATTTTCATTTTTAACCTTGTCTCAGTCTGGTCATTTTCATTTTTGA
1 ACCTTGGCTTAGTCCAATCATTTTCATTTTTAACCTTGGCTCAGTCTGGTCATTTTCATTATCGA
7092732 TTTTGACTCAATTCGGTTACTTTTATTTTTG
66 TTTTGACTCAATTCGGTTACTTTTATTTTTG
* * * * *
7092763 ACCTTGGCTTAGTCCATTCATTTTCATTTTTGACTTTGGCTTAGTCTGGTTATTTTCATTATCGA
1 ACCTTGGCTTAGTCCAATCATTTTCATTTTTAACCTTGGCTCAGTCTGGTCATTTTCATTATCGA
* * *
7092828 TTTTGGCTCAATTTGGTTACTTTTATTTTTT
66 TTTTGACTCAATTCGGTTACTTTTATTTTTG
7092859 ACCTTGGCTTAGT
1 ACCTTGGCTTAGT
7092872 TTGGCTGTTT
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (96 bp):
ACCTTGGCTTAGTCCAATCATTTTCATTTTTAACCTTGGCTCAGTCTGGTCATTTTCATTATCGA
TTTTGACTCAATTCGGTTACTTTTATTTTTG
Found at i:7092814 original size:64 final size:62
Alignment explanation
Indices: 7092573--7092818 Score: 197
Period size: 64 Copynumber: 3.9 Consensus size: 62
7092563 TCATTTTCAT
* *
7092573 CCTTGGCTCAGTCTC-GTCATTTTCACTTTCGACTTTGGCTTAGTTGGTCACTTTTATTTTTAA
1 CCTTGGCTTAGTC-CGGTCATTTTCATTTTCGACTTTGGCTTAGTTGGTCA-TTTTATTTTTAA
* * * * * * ***
7092636 CTTTGGCTTAGTCCGGTAAATTTCATTTTCAACCTTGGTTTAGTCCAATCATTTTCATTTTTAA
1 CCTTGGCTTAGTCCGGTCATTTTCATTTTCGACTTTGGCTTAGT-TGGTCATTTT-ATTTTTAA
* * * * * * * * * *
7092700 CCTTGTCTCAGTCTGGTCATTTTCATTTTTGATTTTGACTCAATTCGGTTACTTTTATTTTTGA
1 CCTTGGCTTAGTCCGGTCATTTTCATTTTCGACTTTGGCTTAGTT-GGTCA-TTTTATTTTTAA
** * *
7092764 CCTTGGCTTAGTCCATTCATTTTCATTTTTGACTTTGGCTTAGTCTGGTTATTTT
1 CCTTGGCTTAGTCCGGTCATTTTCATTTTCGACTTTGGCTTAGT-TGGTCATTTT
7092819 CATTATCGAT
Statistics
Matches: 138, Mismatches: 39, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
62 1 0.01
63 42 0.30
64 90 0.65
65 5 0.04
ACGTcount: A:0.16, C:0.19, G:0.15, T:0.50
Consensus pattern (62 bp):
CCTTGGCTTAGTCCGGTCATTTTCATTTTCGACTTTGGCTTAGTTGGTCATTTTATTTTTAA
Found at i:7092897 original size:96 final size:94
Alignment explanation
Indices: 7092684--7092963 Score: 262
Period size: 96 Copynumber: 2.9 Consensus size: 94
7092674 TTTAGTCCAA
* * * *
7092684 TCATTTTCA-TTTTTAACCTTGTCTCAGTCTGGTCATTTTCATTTTTGATTTTGACTCAATTCGG
1 TCATTTTCATTTTTTAA-TTTGGCTCAGTCTGGTCATTTTCATTATCGATTTTGACTCAATTCGG
7092748 TTACTTTTATTTTTGACCTTGGCTTAGTCCAT
65 TTACTTTTATTTTTGACCTTGGCTTAGT-C-T
* * * * * *
7092780 TCATTTTCATTTTTGACTTTGGCTTAGTCTGGTTATTTTCATTATCGATTTTGGCTCAATTTGGT
1 TCATTTTCATTTTTTAATTTGGCTCAGTCTGGTCATTTTCATTATCGATTTTGACTCAATTCGGT
*
7092845 TACTTTTATTTTTTACCTTGGCTTAGT-T
66 TACTTTTATTTTTGACCTTGGCTTAGTCT
* * * ** * * **
7092873 TGGCTGTTTTCATTTTTTAATTTGGTTCAATCCAGTCATTTTCATTTTTGACCTTGACTCAA-TC
1 T--C-ATTTTCATTTTTTAATTTGGCTCAGTCTGGTCATTTTCATTATCGATTTTGACTCAATTC
* *
7092937 GGAT-CATTTCCATTTTTGACCTTGGCT
63 GGTTAC-TTT-TATTTTTGACCTTGGCT
7092964 CAATCTAGTC
Statistics
Matches: 149, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 8 0.05
96 133 0.89
97 5 0.03
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.52
Consensus pattern (94 bp):
TCATTTTCATTTTTTAATTTGGCTCAGTCTGGTCATTTTCATTATCGATTTTGACTCAATTCGGT
TACTTTTATTTTTGACCTTGGCTTAGTCT
Found at i:7093078 original size:33 final size:32
Alignment explanation
Indices: 7093036--7093151 Score: 126
Period size: 33 Copynumber: 3.5 Consensus size: 32
7093026 TATATTTTTT
** *
7093036 ATTTTATTTTGTGACTTTGGCTAAGACTAAGTC
1 ATTTTATTTT-TGACTTTAACTAAGACAAAGTC
*
7093069 ATTTTATTTTTCGACTTCAACTAAGACAAAGTC
1 ATTTTATTTTT-GACTTTAACTAAGACAAAGTC
* *
7093102 ATTTTATTTCCTT-ATTTTAACTAAGACCAAGTC
1 ATTTTATTT--TTGACTTTAACTAAGACAAAGTC
7093135 ATTTTATTTTTTGACTT
1 ATTTTA-TTTTTGACTT
7093152 GAAGTCATCT
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.04
33 62 0.89
34 3 0.04
35 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.47
Consensus pattern (32 bp):
ATTTTATTTTTGACTTTAACTAAGACAAAGTC
Found at i:7093695 original size:17 final size:19
Alignment explanation
Indices: 7093659--7093695 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
7093649 TAGTAAAATT
*
7093659 TATGGTATAGATGAATGGA
1 TATGGTATAAATGAATGGA
7093678 TATGG-ATAAATG-ATGGA
1 TATGGTATAAATGAATGGA
7093695 T
1 T
7093696 GAATGGATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32
Consensus pattern (19 bp):
TATGGTATAAATGAATGGA
Found at i:7100861 original size:38 final size:38
Alignment explanation
Indices: 7100819--7100900 Score: 128
Period size: 38 Copynumber: 2.2 Consensus size: 38
7100809 AAAGAGCATA
* * *
7100819 ATCAAGATTTACTATCATTATGTAATTATGTAAAATAC
1 ATCAAGATCTACTATCATTAAGTAATTATATAAAATAC
7100857 ATCAAGATCTACTATCATTAAGTAATTATATAAAATAC
1 ATCAAGATCTACTATCATTAAGTAATTATATAAAATAC
*
7100895 AACAAG
1 ATCAAG
7100901 CTAAAATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (38 bp):
ATCAAGATCTACTATCATTAAGTAATTATATAAAATAC
Found at i:7102154 original size:42 final size:42
Alignment explanation
Indices: 7102097--7102178 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
7102087 TATTAACATT
7102097 AAAATAAATACACTTACACTAGTATATATATTCTTGTATGTA
1 AAAATAAATACACTTACACTAGTATATATATTCTTGTATGTA
* *
7102139 AAAATAAATATACTTACACTTGTATATATATTCTTGTATG
1 AAAATAAATACACTTACACTAGTATATATATTCTTGTATG
7102179 AAACAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.40
Consensus pattern (42 bp):
AAAATAAATACACTTACACTAGTATATATATTCTTGTATGTA
Found at i:7103259 original size:103 final size:103
Alignment explanation
Indices: 7103049--7103255 Score: 371
Period size: 103 Copynumber: 2.0 Consensus size: 103
7103039 TGACTAATAC
* * *
7103049 AACAATGATATTTATATACTCATTTTTTGTATAACTAACTTAAACAAAGGTAAGAAATAAAATAC
1 AACAATGATATTTATATACTAATTTTTTGTATAACTAACATAAACAAAGGCAAGAAATAAAATAC
*
7103114 TAAAAAGATAAAAAGACTGTGAAGTTGTGAATAACTAG
66 TAAAAAGATAAAAAGACTGTGAAGTTATGAATAACTAG
7103152 AACAATGATATTTATATACTAATTTTTTGTATAACTAACATAAACAAAGGCAAGAAAT-AAATAC
1 AACAATGATATTTATATACTAATTTTTTGTATAACTAACATAAACAAAGGCAAGAAATAAAATAC
7103216 TAAAAAGATAAAAAGACTGTGAAGTTATGAATAACTAG
66 TAAAAAGATAAAAAGACTGTGAAGTTATGAATAACTAG
7103254 AA
1 AA
7103256 ACAAGAACAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
102 45 0.45
103 55 0.55
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (103 bp):
AACAATGATATTTATATACTAATTTTTTGTATAACTAACATAAACAAAGGCAAGAAATAAAATAC
TAAAAAGATAAAAAGACTGTGAAGTTATGAATAACTAG
Found at i:7106595 original size:20 final size:20
Alignment explanation
Indices: 7106570--7106789 Score: 131
Period size: 18 Copynumber: 11.2 Consensus size: 20
7106560 CTTATAAATA
*
7106570 ATATTATATTGATAAATAAT
1 ATATTATATTAATAAATAAT
7106590 ATATTATATTAATAAATAAT
1 ATATTATATTAATAAATAAT
*
7106610 ATA--CTATTAATATAATATAT
1 ATATTATATTAATA-AATA-AT
* *
7106630 CAAAATATATTAATAAATAAT
1 -ATATTATATTAATAAATAAT
*
7106651 ATTATAATCTATTAAT-AATAAT
1 A-TAT--TATATTAATAAATAAT
* * * ** *
7106673 GTGTTA-ATAAAT-TTTATT
1 ATATTATATTAATAAATAAT
7106691 ATATTA-ATTAATAAATATTAT
1 ATATTATATTAATAAATA--AT
*
7106712 AATAATATATTAATAAATAAT
1 -ATATTATATTAATAAATAAT
*
7106733 ATA--CTATTAAT--ATAAT
1 ATATTATATTAATAAATAAT
* *
7106749 ATATTA-ATAAAT-AATATT
1 ATATTATATTAATAAATAAT
*
7106767 ATAATATATTAATAAATAAT
1 ATATTATATTAATAAATAAT
7106787 ATA
1 ATA
7106790 GGATAACAAA
Statistics
Matches: 154, Mismatches: 28, Indels: 36
0.71 0.13 0.17
Matches are distributed among these distances:
16 8 0.05
17 5 0.03
18 41 0.27
19 12 0.08
20 36 0.23
21 10 0.06
22 15 0.10
23 27 0.18
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (20 bp):
ATATTATATTAATAAATAAT
Found at i:7106727 original size:23 final size:23
Alignment explanation
Indices: 7106584--7106735 Score: 84
Period size: 23 Copynumber: 6.6 Consensus size: 23
7106574 TATATTGATA
* *
7106584 AATAATATATTATATTAATA-AAT
1 AATAA-ATATTATAATAATATATT
*
7106607 AATATACTATTA-ATATAATATA-T
1 AATA-AATATTATA-ATAATATATT
*
7106630 CA-AAATA-TATTAATAAATAATATT
1 AATAAATATTA-TAAT-AAT-ATATT
* * *
7106654 -ATAATCTATTAATAATAATGTGTT
1 AATAA-ATATT-ATAATAATATATT
* * *
7106678 AATAAATTTTATTATATTA-ATT
1 AATAAATATTATAATAATATATT
7106700 AATAAATATTATAATAATATATT
1 AATAAATATTATAATAATATATT
*
7106723 AATAAATAATATA
1 AATAAATATTATA
7106736 CTATTAATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 28
0.69 0.12 0.20
Matches are distributed among these distances:
20 2 0.02
21 5 0.05
22 24 0.24
23 41 0.42
24 11 0.11
25 9 0.09
26 5 0.05
27 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (23 bp):
AATAAATATTATAATAATATATT
Found at i:7106773 original size:23 final size:23
Alignment explanation
Indices: 7106676--7106788 Score: 102
Period size: 23 Copynumber: 4.6 Consensus size: 23
7106666 TAATAATGTG
** *
7106676 TTAATAAATTTTATTATATTA-A
1 TTAATAAATAATATTATAATATA
* *
7106698 TTAATAAATATTATAATAATATA
1 TTAATAAATAATATTATAATATA
7106721 TTAATAAATAATATACTATTAATATAATATA
1 TTAAT--A-AATA-A-TATT-ATA--ATATA
7106752 TTAATAAATAATATTATAATATA
1 TTAATAAATAATATTATAATATA
7106775 TTAATAAATAATAT
1 TTAATAAATAATAT
7106789 AGGATAACAA
Statistics
Matches: 77, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
22 18 0.23
23 25 0.32
25 4 0.05
26 8 0.10
27 1 0.01
28 7 0.09
29 4 0.05
31 10 0.13
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (23 bp):
TTAATAAATAATATTATAATATA
Found at i:7106882 original size:16 final size:17
Alignment explanation
Indices: 7106851--7106899 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
7106841 AATATTAAAT
7106851 ATTATTATTAAAATA-TA
1 ATTATT-TTAAAATATTA
*
7106868 ATTATTTTTAAATATTA
1 ATTATTTTAAAATATTA
*
7106885 ATAATTTTAATAATA
1 ATTATTTTAA-AATA
7106900 AATAATTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 7 0.26
17 16 0.59
18 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATTTTAAAATATTA
Found at i:7106888 original size:20 final size:20
Alignment explanation
Indices: 7106823--7106890 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 20
7106813 AGTATTTTTT
*
7106823 ATATTAAT-ATAATATTTT-A
1 ATATTAATAATTAT-TTTTAA
*
7106842 ATATTAA-ATATTATTATTAA
1 ATATTAATA-ATTATTTTTAA
7106862 A-A-T-ATAATTATTTTTAA
1 ATATTAATAATTATTTTTAA
7106879 ATATTAATAATT
1 ATATTAATAATT
7106891 TTAATAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 13
0.71 0.05 0.24
Matches are distributed among these distances:
17 12 0.31
18 3 0.08
19 12 0.31
20 12 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATTAATAATTATTTTTAA
Found at i:7106903 original size:16 final size:16
Alignment explanation
Indices: 7106827--7106912 Score: 52
Period size: 16 Copynumber: 5.1 Consensus size: 16
7106817 TTTTTTATAT
7106827 TAATATAAT-ATTTTAA
1 TAATA-AATAATTTTAA
*
7106843 TATTAAATATTATTATTAA
1 TAATAAATA--ATT-TTAA
*
7106862 -AATATAATTATTTTTAA
1 TAATA-AA-TAATTTTAA
*
7106879 -ATATTAATAATTTTAA
1 TA-ATAAATAATTTTAA
*
7106895 TAATAAATAATTTCAA
1 TAATAAATAATTTTAA
7106911 TA
1 TA
7106913 TACTTTAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
15 3 0.05
16 26 0.47
17 8 0.15
18 10 0.18
19 6 0.11
20 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATAAATAATTTTAA
Found at i:7107101 original size:15 final size:14
Alignment explanation
Indices: 7107065--7107099 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7107055 AAAATATAAA
*
7107065 CATTTTTCAAAAAT
1 CATTTTTAAAAAAT
*
7107079 TATTTTTAAAAAAT
1 CATTTTTAAAAAAT
7107093 CATTTTT
1 CATTTTT
7107100 TATGAAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (14 bp):
CATTTTTAAAAAAT
Found at i:7118705 original size:2 final size:2
Alignment explanation
Indices: 7118694--7118733 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
7118684 AGTGTCAAAC
7118694 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7118734 CATACATACT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7120684 original size:3 final size:3
Alignment explanation
Indices: 7120676--7120705 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7120666 TGCATCACAT
7120676 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7120706 AGCTATATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7124547 original size:33 final size:33
Alignment explanation
Indices: 7124510--7124576 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
7124500 ATTTTTTGTC
* *
7124510 TCAGATTTGT-TGAAATTTTTTTATAT-TTAATTT
1 TCAGATTAGTATG-AATTATTTTATATGTT-ATTT
7124543 TCAGATTAGTATGAATTATTTTATATGTTATTT
1 TCAGATTAGTATGAATTATTTTATATGTTATTT
7124576 T
1 T
7124577 GCTTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 26 0.87
34 4 0.13
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.58
Consensus pattern (33 bp):
TCAGATTAGTATGAATTATTTTATATGTTATTT
Found at i:7128561 original size:19 final size:19
Alignment explanation
Indices: 7128539--7128577 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7128529 TTTTGTTTGA
7128539 TTTTGAATTTTG-ATTTTTT
1 TTTTG-ATTTTGAATTTTTT
*
7128558 TTTTGTTTTTGAATTTTTT
1 TTTTGATTTTGAATTTTTT
7128577 T
1 T
7128578 AACTAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.13, C:0.00, G:0.10, T:0.77
Consensus pattern (19 bp):
TTTTGATTTTGAATTTTTT
Found at i:7128562 original size:25 final size:26
Alignment explanation
Indices: 7128525--7128574 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
7128515 AAAGTTTTCT
7128525 ATTTTTTTGTTTGATTTTGAATTTTG
1 ATTTTTTTGTTTGATTTTGAATTTTG
*
7128551 ATTTTTTT-TTTGTTTTTGAATTTT
1 ATTTTTTTGTTTGATTTTGAATTTT
7128575 TTTAACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (26 bp):
ATTTTTTTGTTTGATTTTGAATTTTG
Found at i:7129014 original size:104 final size:106
Alignment explanation
Indices: 7128765--7129144 Score: 378
Period size: 104 Copynumber: 3.6 Consensus size: 106
7128755 AAGGTTTTAC
* * * * * * * *
7128765 AAATCTCAAAATCTTTGAATGCTCCTCGTAGTAAAGTCGTTGAAAC-TTTAAAAATTAAAATCTT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
** * * * * * *
7128829 TT-ACCT-AGAA-GTCTTATAGATTATGCGCGAAGGTTTTAT
66 TTGTGCTCA-AAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* * * * * ** * * *
7128868 AGATTTTGAAATCTTTGAATGCTCACCGTACCAAAGGAGTTAAAACTTTAAAAATTTTAAATATT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
*
7128933 TTGT-C-CAAAGGTTTTACAGGTTATGCTCGAAAGTCTTAG
66 TTGTGCTCAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* * *
7128972 AAATCTTAAAATTTTTGAGTGCTCATCATATTAGAGGCGTTAAAACTTTTAAAATTTAAAATATT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
* * * *
7129037 TT-TGCTTAAAGGTTTTACAGATTATGTTCGGAGGTCTTAG
66 TTGTGCTCAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* *
7129077 AGATCTTAAAATCTTTGAATGCTCTTCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
7129142 TTG
66 TTG
7129145 CACTGAGGTC
Statistics
Matches: 224, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
103 38 0.17
104 95 0.42
105 91 0.41
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (106 bp):
AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
TTGTGCTCAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
Found at i:7129077 original size:105 final size:105
Alignment explanation
Indices: 7128765--7129143 Score: 374
Period size: 105 Copynumber: 3.6 Consensus size: 105
7128755 AAGGTTTTAC
* * * * * * * *
7128765 AAATCTCAAAATCTTTGAATGCTCCTCGTAGTAAAGTCGTTGAAAC-TTTAAAAATTAAAAT-CT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
* * * * * * *
7128828 TTT-ACCTAGAA-GTCTTATAGATTATGCGCGAAGGTTTTAT
66 TTTGTCC-A-AAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* * * * * ** * * *
7128868 AGATTTTGAAATCTTTGAATGCTCACCGTACCAAAGGAGTTAAAACTTTAAAAATTTTAAATA-T
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
*
7128932 TTTGTCCAAAGGTTTTACAGGTTATGCTCGAAAGTCTTAG
66 TTTGTCCAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* * *
7128972 AAATCTTAAAATTTTTGAGTGCTCATCATATTAGAGGCGTTAAAACTTTTAAAATTTAAAATATT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
* * * *
7129037 TTTG-CTTAAAGGTTTTACAGATTATGTTCGGAGGTCTTAG
66 TTTGTC-CAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
* *
7129077 AGATCTTAAAATCTTTGAATGCTCTTCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
1 AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
7129142 TT
66 TT
7129144 GCACTGAGGT
Statistics
Matches: 225, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
103 37 0.16
104 90 0.40
105 98 0.44
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (105 bp):
AAATCTTAAAATCTTTGAATGCTCATCATATTAAAGGCGTTAAAACTTTTAAAATTTAAAATATT
TTTGTCCAAAGGTTTTACAGATTATGCTCGAAAGTCTTAG
Found at i:7129444 original size:104 final size:102
Alignment explanation
Indices: 7129177--7129478 Score: 317
Period size: 104 Copynumber: 2.9 Consensus size: 102
7129167 CATGAAACTC
* * * * *
7129177 TCTTACAGATTATGTTAGAAGGTCTTAAAGATCTTGAAATCTTTGAATGCTCATCGTATTAGA-G
1 TCTTACAGATTATGTCAGAAGGTCTTAAAAATCTTAAAATCTTTGAATGCTCCTAGTATTAGAGG
* * *
7129241 -ATGTTGAAACTTTAAAAATTTAAAATATTTATTTGGAAT
66 CAT-TT-AAACTTTAAAAATTTAAAATGTTT-TTTGAAAG
* * * * * *
7129280 TTTTAAAAATTATGTTC-GAAGGTCTTAAAAATCTCAAAACCTTTGAATGCTTCTCA-TATTAGA
1 TCTTACAGATTATG-TCAGAAGGTCTTAAAAATCTTAAAATCTTTGAATGCTCCT-AGTATTAGA
*
7129343 GGCATTTAAACTTTAAAATTTTAAAATGTTTTGCTTGAAAG
64 GGCATTTAAACTTTAAAAATTTAAAATGTTTT--TTGAAAG
* * *
7129384 TCTTACAGATTATGCTCAG-AGATTTTAAAAATCTTAAAATCTTTTAATGCTCCTAGTATTAGAG
1 TCTTACAGATTATG-TCAGAAGGTCTTAAAAATCTTAAAATCTTTGAATGCTCCTAGTATTAGAG
* *
7129448 GCATTGAAATTTTAAAAATTTAAAATGTTTT
65 GCATTTAAACTTTAAAAATTTAAAATGTTTT
7129479 AACCGGAGGA
Statistics
Matches: 163, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
102 1 0.01
103 72 0.44
104 87 0.53
105 3 0.02
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (102 bp):
TCTTACAGATTATGTCAGAAGGTCTTAAAAATCTTAAAATCTTTGAATGCTCCTAGTATTAGAGG
CATTTAAACTTTAAAAATTTAAAATGTTTTTTGAAAG
Found at i:7129676 original size:23 final size:23
Alignment explanation
Indices: 7129632--7129676 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
7129622 ATTCTCTTGG
* * *
7129632 GTGTCAGCTTAACTGGGCTTAAT
1 GTGTCAACTAAACTAGGCTTAAT
*
7129655 GTGTCAACTAAACTAGGTTTAA
1 GTGTCAACTAAACTAGGCTTAA
7129677 AATTTTAACT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (23 bp):
GTGTCAACTAAACTAGGCTTAAT
Found at i:7130116 original size:84 final size:85
Alignment explanation
Indices: 7130025--7130213 Score: 211
Period size: 84 Copynumber: 2.2 Consensus size: 85
7130015 GATACAGATA
* * * **
7130025 CAAGTAATGTAACTGCGAATGT-CTTTTTCATGATGTAGATAAAAAAGTGAATATCTTTCTCA-A
1 CAAGTAATGTAAATGCAAATGTCCCTTTT-ATGATGTAGATAAAAAAGCAAATATCTTTCTCATA
*
7130088 ATGCATATTCAAGTGTGAATG
65 ATGCATATGCAAGTGTGAATG
*** * *
7130109 CAAGTAATGTAAATGCAAATGTCCCTTTTATGATGTAGATGTGAATGCAAATGTCTTTCTCATAA
1 CAAGTAATGTAAATGCAAATGTCCCTTTTATGATGTAGATAAAAAAGCAAATATCTTTCTCATAA
*
7130174 TGCATATGCACGTGTGAATG
66 TGCATATGCAAGTGTGAATG
* * * *
7130194 TAAGTGATGCAAATGTAAAT
1 CAAGTAATGTAAATGCAAAT
7130214 ATCTTTTTCT
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
84 46 0.53
85 41 0.47
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (85 bp):
CAAGTAATGTAAATGCAAATGTCCCTTTTATGATGTAGATAAAAAAGCAAATATCTTTCTCATAA
TGCATATGCAAGTGTGAATG
Found at i:7131687 original size:12 final size:13
Alignment explanation
Indices: 7131666--7131692 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7131656 TTATTTACTC
7131666 TTTGCTTTTTTTT
1 TTTGCTTTTTTTT
7131679 TTTGCTTTTTTTT
1 TTTGCTTTTTTTT
7131692 T
1 T
7131693 AAACATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (13 bp):
TTTGCTTTTTTTT
Found at i:7134718 original size:131 final size:131
Alignment explanation
Indices: 7134484--7134744 Score: 441
Period size: 131 Copynumber: 2.0 Consensus size: 131
7134474 AGGCCTAAGA
* ** *
7134484 TTGACATTTGTCTAAACTGGAGACAACTTGATAAAAGTATCAATATAAGGTTGATGAGTTGCTGA
1 TTGACATTTATCTAAACTAAAGACAACTTGATAAAAGTATCAATATAAGGTTGATGAGTTACTGA
*
7134549 AGGTGCTTATGACTTATGAAGGTCTCGAACATACAGATATGTGAACCCAAGTGGACACAACGGTG
66 AGGTGCTTATGACTTATGAAGGTCTCAAACATACAGATATGTGAACCCAAGTGGACACAACGGTG
7134614 C
131 C
* *
7134615 TTGACATTTATCTGAACTAAAGACAACTTGGTAAAAGTATCAATATAAGGTTGATGAGTTACTGA
1 TTGACATTTATCTAAACTAAAGACAACTTGATAAAAGTATCAATATAAGGTTGATGAGTTACTGA
* *
7134680 AGGTGCTTGTGACTTATGAAGGTCTCAAACATACAGATATGTGAACCCAAGTGGACACAATGGTG
66 AGGTGCTTATGACTTATGAAGGTCTCAAACATACAGATATGTGAACCCAAGTGGACACAACGGTG
7134745 TTTCAACAAC
Statistics
Matches: 121, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 121 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (131 bp):
TTGACATTTATCTAAACTAAAGACAACTTGATAAAAGTATCAATATAAGGTTGATGAGTTACTGA
AGGTGCTTATGACTTATGAAGGTCTCAAACATACAGATATGTGAACCCAAGTGGACACAACGGTG
C
Found at i:7135082 original size:28 final size:28
Alignment explanation
Indices: 7135050--7135107 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
7135040 ATGACATGAA
7135050 TTATATTATTAAAACTTTTAAAAATATC
1 TTATATTATTAAAACTTTTAAAAATATC
7135078 TTATATTATTAAAACTTTTAAAAATATC
1 TTATATTATTAAAACTTTTAAAAATATC
7135106 TT
1 TT
7135108 TTTGCTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (28 bp):
TTATATTATTAAAACTTTTAAAAATATC
Found at i:7143252 original size:28 final size:28
Alignment explanation
Indices: 7143208--7143283 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
7143198 TGGAATTTGT
7143208 TCATTTTTTT-AAGATTAAACACATACC
1 TCATTTTTTTCAAGATTAAACACATACC
* *
7143235 TCATTTTTTTCAAAATTAAACATATACC
1 TCATTTTTTTCAAGATTAAACACATACC
*
7143263 TTA-TTTTTTCAAGATTAAACA
1 TCATTTTTTTCAAGATTAAACA
7143284 TCAAGATACA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 27 0.61
28 17 0.39
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (28 bp):
TCATTTTTTTCAAGATTAAACACATACC
Found at i:7143284 original size:27 final size:27
Alignment explanation
Indices: 7143208--7143284 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 27
7143198 TGGAATTTGT
* *
7143208 TCATTTTTTTAAGATTAAACACATACC
1 TCATTTTTTCAAGATTAAACATATACC
*
7143235 TCATTTTTTTCAAAATTAAACATATACC
1 TCA-TTTTTTCAAGATTAAACATATACC
*
7143263 TTATTTTTTCAAGATTAAACAT
1 TCATTTTTTCAAGATTAAACAT
7143285 CAAGATACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 21 0.48
28 23 0.52
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.44
Consensus pattern (27 bp):
TCATTTTTTCAAGATTAAACATATACC
Found at i:7154550 original size:36 final size:37
Alignment explanation
Indices: 7154472--7154548 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
7154462 CATCTAATTC
* ** * *
7154472 TTTTATTTTTTATATTTTAAAATTATTTTTCATGAAT
1 TTTTATTTTTTATATTTAAAAATTATGATACATCAAT
7154509 TTTTATTTTTTA-ATGTTAAAAATTATGATACATCAAT
1 TTTTATTTTTTATAT-TTAAAAATTATGATACATCAAT
7154546 TTT
1 TTT
7154549 ATAAAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (37 bp):
TTTTATTTTTTATATTTAAAAATTATGATACATCAAT
Found at i:7164427 original size:36 final size:36
Alignment explanation
Indices: 7164387--7164527 Score: 106
Period size: 36 Copynumber: 4.1 Consensus size: 36
7164377 TTTTTAAATA
7164387 ATATTATATTAATA-AATTATATATTATTAATATAAT
1 ATATTATA-TAATATAATTATATATTATTAATATAAT
*
7164423 ATATTA-ATAATATATATTATA-ATATACTAATA-AAT
1 ATATTATATAATATA-ATTATATAT-TATTAATATAAT
* *
7164458 A-ATAATAATAATATAA-TAAATATTATTAAT-T--T
1 ATATTAT-ATAATATAATTATATATTATTAATATAAT
* * *
7164490 A-ATTA-ATAAGTATTATAATATACTATTAATATAAT
1 ATATTATATAA-TATAATTATATATTATTAATATAAT
7164525 ATA
1 ATA
7164528 CTATTAAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
30 4 0.05
31 4 0.05
32 16 0.19
33 1 0.01
34 17 0.20
35 13 0.16
36 28 0.34
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (36 bp):
ATATTATATAATATAATTATATATTATTAATATAAT
Found at i:7164545 original size:21 final size:20
Alignment explanation
Indices: 7164430--7164574 Score: 101
Period size: 21 Copynumber: 7.5 Consensus size: 20
7164420 AATATATTAA
*
7164430 TAATATATATTATAATATAC
1 TAATAAATATTATAATATAC
*
7164450 TAATAAATAATAATAATAATA-
1 TAATAAAT-ATTATAAT-ATAC
* *
7164471 TAATAAATATTATTAATTTAAT
1 TAATAAATATTA-TAATAT-AC
*
7164493 TAATAAGTATTATAATATAC
1 TAATAAATATTATAATATAC
*
7164513 T-AT---TAATATAATATAC
1 TAATAAATATTATAATATAC
* *
7164529 TATTAAATATTATTA-ATA-
1 TAATAAATATTATAATATAC
*
7164547 -AAT-AATATTATAATATAAA
1 TAATAAATATTATAATAT-AC
7164566 TAATAAATA
1 TAATAAATA
7164575 ATTTTATTTT
Statistics
Matches: 98, Mismatches: 13, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
16 22 0.22
17 5 0.05
18 1 0.01
19 5 0.05
20 22 0.22
21 29 0.30
22 14 0.14
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (20 bp):
TAATAAATATTATAATATAC
Found at i:7164563 original size:36 final size:35
Alignment explanation
Indices: 7164380--7164518 Score: 86
Period size: 32 Copynumber: 4.1 Consensus size: 35
7164370 AATTTTATTT
*
7164380 TTAAATAATATTATATTAATAA-ATTAT-ATAT--TA
1 TTAAATATTATTA-A-TAATAATATTATAATATACTA
7164413 TTAATATAATATATTAATAATATATATTATAATATACTA
1 TTAA-AT-AT-TATTAATAATA-ATATTATAATATACTA
* * *
7164452 ATAAATA--A-TAATAATAATATAATAA-ATATTA
1 TTAAATATTATTAATAATAATATTATAATATACTA
*
7164483 TT-AAT-TTAATTAAT-A-AGTATTATAATATACTA
1 TTAAATATT-ATTAATAATAATATTATAATATACTA
7164515 TTAA
1 TTAA
7164519 TATAATATAC
Statistics
Matches: 84, Mismatches: 8, Indels: 28
0.70 0.07 0.23
Matches are distributed among these distances:
30 3 0.04
31 14 0.17
32 17 0.20
33 17 0.20
34 8 0.10
35 3 0.04
36 10 0.12
37 5 0.06
38 2 0.02
39 5 0.06
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (35 bp):
TTAAATATTATTAATAATAATATTATAATATACTA
Found at i:7170441 original size:36 final size:36
Alignment explanation
Indices: 7170401--7170474 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
7170391 AAACATTGGC
* *
7170401 TTCAATGATTAAAGCACCATAAGGGTAATTTAGTAA
1 TTCAATGATAAAAGCACCACAAGGGTAATTTAGTAA
* * * *
7170437 TTCAATTATAAAAGCACTACATGTGTAATTTAGTAA
1 TTCAATGATAAAAGCACCACAAGGGTAATTTAGTAA
7170473 TT
1 TT
7170475 TAAGCACTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (36 bp):
TTCAATGATAAAAGCACCACAAGGGTAATTTAGTAA
Found at i:7174692 original size:17 final size:19
Alignment explanation
Indices: 7174655--7174698 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
7174645 TAGTCAAGGG
7174655 GCAGAATCAGAGCCATTTT
1 GCAGAATCAGAGCCATTTT
*
7174674 GCAG-ATCAGAGGC-TTTT
1 GCAGAATCAGAGCCATTTT
7174691 GCCAGAAT
1 G-CAGAAT
7174699 ATGCCAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 11 0.50
19 6 0.27
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (19 bp):
GCAGAATCAGAGCCATTTT
Found at i:7176292 original size:19 final size:19
Alignment explanation
Indices: 7176270--7176308 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7176260 AATAAGTGAG
* *
7176270 ATTTTTATTTGTTTAATTT
1 ATTTTTATTTATTAAATTT
7176289 ATTTTTATTTATTAAATTT
1 ATTTTTATTTATTAAATTT
7176308 A
1 A
7176309 ATAAATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (19 bp):
ATTTTTATTTATTAAATTT
Found at i:7178714 original size:34 final size:35
Alignment explanation
Indices: 7178562--7178711 Score: 164
Period size: 34 Copynumber: 4.4 Consensus size: 35
7178552 ACTGTATTGA
* * ** *
7178562 AAAATGCATTTATGAAAAATATTACAATTAT-TCA
1 AAAATCCATTTTTGAAAAGCATTACAATTATCTCG
** *
7178596 AAAATGTATTTTTGAAAAGTATTACAATTAT-TCG
1 AAAATCCATTTTTGAAAAGCATTACAATTATCTCG
**
7178630 AAAATATATTTTTGAAAAGCATTACAATTATC-CG
1 AAAATCCATTTTTGAAAAGCATTACAATTATCTCG
* *
7178664 AAAATCCATTTCTGGAAAGCATTACAATTATCTCG
1 AAAATCCATTTTTGAAAAGCATTACAATTATCTCG
7178699 -AAATCCATTTTTG
1 AAAATCCATTTTTG
7178712 GAAGTAATTT
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
34 101 0.98
35 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (35 bp):
AAAATCCATTTTTGAAAAGCATTACAATTATCTCG
Found at i:7181736 original size:61 final size:62
Alignment explanation
Indices: 7181651--7181881 Score: 171
Period size: 61 Copynumber: 3.5 Consensus size: 62
7181641 TAAGAAAATA
*
7181651 AAATTCATACTTTAATACTCAAATATCACCACCGAAAAAATGTGAATGTAAAGAAAAAATGT
1 AAATTCAAACTTTAATACTCAAATATCACCACCGAAAAAATGTGAATGTAAAGAAAAAATGT
** *
7181713 AAATTCAAACTTTAA-ACTCAAATATCACCATTGAGTGATTTTCAAAATGTCTTGAATATCATTA
1 AAATTCAAACTTTAATACTCAAATATCACCACCGA---A-----AAAATG---TGAATGT-A--A
**
7181777 TTAAGAAAATG-
52 AGAA-AAAATGT
* * * * ** * *
7181788 AAATTCATACTTTAATACTCAGATATCACCATCGAGAAAATGCAAATGTAGAGAAAGAATGT
1 AAATTCAAACTTTAATACTCAAATATCACCACCGAAAAAATGTGAATGTAAAGAAAAAATGT
*
7181850 AAATTCAAACTTTAA-ACTCTAATATCACCACC
1 AAATTCAAACTTTAATACTCAAATATCACCACC
7181882 AAGAGATTTT
Statistics
Matches: 131, Mismatches: 21, Indels: 35
0.70 0.11 0.19
Matches are distributed among these distances:
61 36 0.27
62 30 0.23
64 2 0.02
65 4 0.03
68 6 0.05
69 6 0.05
72 6 0.05
73 1 0.01
75 17 0.13
76 23 0.18
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (62 bp):
AAATTCAAACTTTAATACTCAAATATCACCACCGAAAAAATGTGAATGTAAAGAAAAAATGT
Found at i:7181746 original size:137 final size:137
Alignment explanation
Indices: 7181536--7181879 Score: 489
Period size: 137 Copynumber: 2.5 Consensus size: 137
7181526 TTTTTAACAT
* * * * * *
7181536 TCAAATATCATCACTGAGAAGATGCAAATGT--AGATAAAA--TAAATTCAAACTTTAAACTCAG
1 TCAAATATCACCACCGAAAAAATGCAAATGTAAAGAAAAAATGTAAATTCAAACTTTAAACTCAA
*
7181597 ATCTCACCATTGAGTGATTTTAAAAATGTCTTGAATATCACCATTAAGAAAATAAAATTCATACT
66 ATATCACCATTGAGTGATTTTAAAAATGTCTTGAATATCACCATTAAGAAAATAAAATTCATACT
7181662 TTAATAC
131 TTAATAC
**
7181669 TCAAATATCACCACCGAAAAAATGTGAATGTAAAGAAAAAATGTAAATTCAAACTTTAAACTCAA
1 TCAAATATCACCACCGAAAAAATGCAAATGTAAAGAAAAAATGTAAATTCAAACTTTAAACTCAA
* ** *
7181734 ATATCACCATTGAGTGATTTTCAAAATGTCTTGAATATCATTATTAAGAAAATGAAATTCATACT
66 ATATCACCATTGAGTGATTTTAAAAATGTCTTGAATATCACCATTAAGAAAATAAAATTCATACT
7181799 TTAATAC
131 TTAATAC
* * * * * *
7181806 TCAGATATCACCATCGAGAAAATGCAAATGTAGAGAAAGAATGTAAATTCAAACTTTAAACTCTA
1 TCAAATATCACCACCGAAAAAATGCAAATGTAAAGAAAAAATGTAAATTCAAACTTTAAACTCAA
7181871 ATATCACCA
66 ATATCACCA
7181880 CCAAGAGATT
Statistics
Matches: 186, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
133 25 0.13
135 7 0.04
137 154 0.83
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.29
Consensus pattern (137 bp):
TCAAATATCACCACCGAAAAAATGCAAATGTAAAGAAAAAATGTAAATTCAAACTTTAAACTCAA
ATATCACCATTGAGTGATTTTAAAAATGTCTTGAATATCACCATTAAGAAAATAAAATTCATACT
TTAATAC
Found at i:7182141 original size:35 final size:35
Alignment explanation
Indices: 7182101--7182186 Score: 111
Period size: 35 Copynumber: 2.5 Consensus size: 35
7182091 TAAAATGATG
**
7182101 ATGCAAATGTCTTTT-TTTTAAGGAATGCACATGAA
1 ATGCAAATGTCTTTTCTTAAAAGG-ATGCACATGAA
* *
7182136 ATGCAAATATCTTTTCTTAAAATGATGCACATGAA
1 ATGCAAATGTCTTTTCTTAAAAGGATGCACATGAA
*
7182171 ATACAAATGTCTTTTC
1 ATGCAAATGTCTTTTC
7182187 CAAAAATACC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
35 39 0.89
36 5 0.11
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGCAAATGTCTTTTCTTAAAAGGATGCACATGAA
Found at i:7182193 original size:35 final size:35
Alignment explanation
Indices: 7182125--7182193 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
7182115 TTTTTAAGGA
* **
7182125 ATGCACATGAAATGCAAATATCTTTTCTTAAAATG
1 ATGCACATGAAATACAAATATCTTTTCCAAAAATG
*
7182160 ATGCACATGAAATACAAATGTCTTTTCCAAAAAT
1 ATGCACATGAAATACAAATATCTTTTCCAAAAAT
7182194 ACCAATGCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (35 bp):
ATGCACATGAAATACAAATATCTTTTCCAAAAATG
Found at i:7182597 original size:17 final size:17
Alignment explanation
Indices: 7182557--7182598 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
7182547 CATAGTGCCA
* *
7182557 TTTATTTTCTTCAAAGT
1 TTTATTTTTTTCAAAAT
7182574 TTT-TTTTTTTCAAAAT
1 TTTATTTTTTTCAAAAT
7182590 TTTATTTTT
1 TTTATTTTT
7182599 CTTCCCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTATTTTTTTCAAAAT
Found at i:7186446 original size:9 final size:9
Alignment explanation
Indices: 7186432--7186463 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7186422 TGTATTAAAA
7186432 TTTTATTTT
1 TTTTATTTT
7186441 TTTTATTTT
1 TTTTATTTT
*
7186450 TTTGATTTT
1 TTTTATTTT
7186459 TTTTA
1 TTTTA
7186464 AAGAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.84
Consensus pattern (9 bp):
TTTTATTTT
Found at i:7189393 original size:12 final size:12
Alignment explanation
Indices: 7189361--7189399 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
7189351 GACTTATTTG
*
7189361 TTTATGATTTAT
1 TTTATTATTTAT
7189373 TTATATTATTTAT
1 TT-TATTATTTAT
7189386 TTTATTA-TTAT
1 TTTATTATTTAT
7189397 TTT
1 TTT
7189400 TTTAAGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 7 0.28
12 7 0.28
13 11 0.44
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTATTATTTAT
Found at i:7189434 original size:24 final size:23
Alignment explanation
Indices: 7189354--7189435 Score: 60
Period size: 24 Copynumber: 3.5 Consensus size: 23
7189344 GTGTATTGAC
*
7189354 TTATTTGTT-TATGATTTATTTAT
1 TTATTTTTTATATGA-TTATTTAT
* *
7189377 ATTATTTATTT-TATTATTATTTTT
1 -TTATTT-TTTATATGATTATTTAT
***
7189401 TTAAGATTTATCATGATTATTTAT
1 TTATTTTTTAT-ATGATTATTTAT
7189425 TTATTTTTTAT
1 TTATTTTTTAT
7189436 TCTTGTTAGG
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 31 0.70
25 6 0.14
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.68
Consensus pattern (23 bp):
TTATTTTTTATATGATTATTTAT
Found at i:7190510 original size:15 final size:14
Alignment explanation
Indices: 7190483--7190521 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7190473 GTTTTTCTTG
* *
7190483 AAAATAAAATTTTC
1 AAAAAAAAATTTTT
7190497 AAAAAAAAATTTTT
1 AAAAAAAAATTTTT
*
7190511 AAGAAAAAATT
1 AAAAAAAAATT
7190522 AGAAGTATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (14 bp):
AAAAAAAAATTTTT
Found at i:7190623 original size:60 final size:59
Alignment explanation
Indices: 7190364--7190656 Score: 361
Period size: 59 Copynumber: 5.0 Consensus size: 59
7190354 TGATTTTCCT
*
7190364 AAAATAAAATTTTCAAAAAAAATATTTTTGAA-GAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATAAAATTTTC-AAAAAAATATTTTT-AAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * * *
7190424 AAAACAAAAATTTTC-AAAAAATATTTTTGAGGAAGAGTTGAAAGTATCAGTTTTTCTTG
1 AAAA-TAAAATTTTCAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * * *
7190483 AAAATAAAATTTTCAAAAAAAAATTTTTAAGAAAAAATT-AGAAGTATCAA-TTTTCTTTA
1 AAAATAAAATTTTCAAAAAAATATTTTTAAGGAAAAGTTGA-AAGTATCAATTTTTC-TTG
* *
7190542 AAAATTAAAA-----AAAAATATATTTTTAAGGAAAAGTTGAAAGTATTAATTTTTCTTG
1 AAAA-TAAAATTTTCAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
7190597 AAAATAAAATTTTCAAAAACAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAAATTTTCAAAAA-AATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
7190657 TATAAAAGCA
Statistics
Matches: 198, Mismatches: 21, Indels: 28
0.80 0.09 0.11
Matches are distributed among these distances:
54 5 0.03
55 35 0.18
56 6 0.03
58 16 0.08
59 80 0.40
60 47 0.24
61 9 0.05
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.36
Consensus pattern (59 bp):
AAAATAAAATTTTCAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:7190903 original size:16 final size:15
Alignment explanation
Indices: 7190882--7190920 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7190872 GGGCTCATTT
7190882 TTATTTTTATTTATTA
1 TTATTTTTA-TTATTA
*
7190898 TTATTTATATTATTA
1 TTATTTTTATTATTA
7190913 TT-TTTTTA
1 TTATTTTTA
7190921 GGATTTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 8 0.38
16 8 0.38
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTTTTATTATTA
Found at i:7191228 original size:21 final size:20
Alignment explanation
Indices: 7191199--7191245 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7191189 ACATAGGCGG
*
7191199 TTTTAGAATTTTTAAGATTTT
1 TTTTTGAATTTTT-AGATTTT
* *
7191220 TTTTTGAATTTTTGGCTTTT
1 TTTTTGAATTTTTAGATTTT
7191240 TTTTTG
1 TTTTTG
7191246 GGAAATTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.17, C:0.02, G:0.13, T:0.68
Consensus pattern (20 bp):
TTTTTGAATTTTTAGATTTT
Found at i:7191928 original size:21 final size:22
Alignment explanation
Indices: 7191894--7191934 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7191884 TTAAAAATAA
7191894 AATTTCTAAAAAATATATTTCC
1 AATTTCTAAAAAATATATTTCC
7191916 AATTTCT-AAAAATATATTT
1 AATTTCTAAAAAATATATTT
7191935 TTGAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTCTAAAAAATATATTTCC
Found at i:7192142 original size:57 final size:58
Alignment explanation
Indices: 7191916--7192328 Score: 478
Period size: 60 Copynumber: 7.0 Consensus size: 58
7191906 ATATATTTCC
* * * *
7191916 AATTTCTAAAAATATATTTTTGAGAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAT
1 AATTT-TAAAAAAATATTTTTAAG-GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
* *
7191976 AATTTTCAAAAAAATTATTTTTAACGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA
1 AATTTT-AAAAAAA-TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
* *
7192036 AATTTTCAAAAAAAATATTTTTCAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
1 AATTTT--AAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
* * * * **
7192096 AATTTTTAAAAAATATTTTT-AGGAAAGGTTGAAAATAACCGTTTTTCTTAAAAATAA
1 AATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
* * * *
7192153 AATTTTAAAAAAATATTTTTGAA-AAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAA
1 AATTTTAAAAAAATATTTTT-AAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
* * * *
7192211 AA-TTAAAAAAAATA-TTTTGAGGAAAAGTTGGAAGTACCAATTTTTCTTAAAAATAAA
1 AATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AA
*
7192268 AATTGTCAAGAAAAACT-TTTTTAAGGAAAAGTTGAAAGTATCAATTTTT-TTAAAAATAA
1 AATT-TTAA-AAAAA-TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
7192327 AA
1 AA
7192329 ACCTCCAAAT
Statistics
Matches: 301, Mismatches: 40, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
55 1 0.00
56 31 0.10
57 65 0.22
58 42 0.14
59 9 0.03
60 109 0.36
61 44 0.15
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (58 bp):
AATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
Found at i:7195611 original size:97 final size:97
Alignment explanation
Indices: 7195445--7195640 Score: 365
Period size: 97 Copynumber: 2.0 Consensus size: 97
7195435 GCACAGGGGC
*
7195445 ATAATTTTAGAGAATAAAGATAAGGCTGGTTGGAAATTTCTTGTCATTTTAGGATTTTTTTTTTA
1 ATAATTTTAGAGAATAAAGATAAGGCTGGTTAGAAATTTCTTGTCATTTTAGGATTTTTTTTTTA
7195510 GATTAATATTGGGATTTCTTTTATGCAATAGG
66 GATTAATATTGGGATTTCTTTTATGCAATAGG
*
7195542 ATAATTTTGGAGAATAAAGATAAGGCTGGTTAGAAATTTCTTGTCATTTTAGGATTTTTTTTTTA
1 ATAATTTTAGAGAATAAAGATAAGGCTGGTTAGAAATTTCTTGTCATTTTAGGATTTTTTTTTTA
*
7195607 GATTAATGTTGGGATTTCTTTTATGCAATAGG
66 GATTAATATTGGGATTTCTTTTATGCAATAGG
7195639 AT
1 AT
7195641 TTCATTTGTT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (97 bp):
ATAATTTTAGAGAATAAAGATAAGGCTGGTTAGAAATTTCTTGTCATTTTAGGATTTTTTTTTTA
GATTAATATTGGGATTTCTTTTATGCAATAGG
Found at i:7196496 original size:8 final size:8
Alignment explanation
Indices: 7196483--7196537 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
7196473 CAATGTGGAT
7196483 GAAAAAAA
1 GAAAAAAA
7196491 GAAAAAAA
1 GAAAAAAA
7196499 TGAAAAAAA
1 -GAAAAAAA
*
7196508 TAAAAAAA
1 GAAAAAAA
7196516 -ATAAAAAA
1 GA-AAAAAA
* *
7196524 TAAAAAGA
1 GAAAAAAA
7196532 GAAAAA
1 GAAAAA
7196538 TGGAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
7 1 0.02
8 31 0.76
9 9 0.22
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (8 bp):
GAAAAAAA
Found at i:7196503 original size:17 final size:17
Alignment explanation
Indices: 7196481--7196515 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7196471 ATCAATGTGG
7196481 ATGAAAAAAAGAAAAAA
1 ATGAAAAAAAGAAAAAA
*
7196498 ATGAAAAAAATAAAAAA
1 ATGAAAAAAAGAAAAAA
7196515 A
1 A
7196516 ATAAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (17 bp):
ATGAAAAAAAGAAAAAA
Found at i:7196506 original size:16 final size:16
Alignment explanation
Indices: 7196484--7196529 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
7196474 AATGTGGATG
*
7196484 AAAAAAAGAAAAAAAT
1 AAAAAAAAAAAAAAAT
7196500 GAAAAAAATAAAAAAAAT
1 -AAAAAAA-AAAAAAAAT
7196518 AAAAAATAAAAA
1 AAAAAA-AAAAA
7196530 GAGAAAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.87, C:0.00, G:0.04, T:0.09
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAT
Found at i:7197573 original size:63 final size:64
Alignment explanation
Indices: 7197494--7197740 Score: 169
Period size: 63 Copynumber: 4.0 Consensus size: 64
7197484 ATTTTTAAGA
* * * *
7197494 AATCTTCAAATAAGAATCTTTAAGTGTCGAATGTGAATCTTCGAACTT-AAATGACAATCTTTG
1 AATCCTCAAATAAGAATCTTTAAGTGTCAAATGAGAATCTTCGAACTTCAAATAACAATCTTTG
* * * * * *
7197557 AATCCTCAAATGAGAATCTTTGAGTGTTAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTG
1 AATCCTCAAATAAGAATCTTTAAGTGTCAAATGAGAATCTTCGAACTTCAAATAACAATCTTTG
* * * * * * * *
7197621 AGGT-GTGAAACCCAA-AA---TT---TGTCAAATGTGAATCTTCGAA-TTCAAATGAGAATTTT
1 A-ATCCTCAAA--TAAGAATCTTTAAGTGTCAAATGAGAATCTTCGAACTTCAAATAACAATCTT
7197677 TG
63 TG
* * * * *
7197679 AAT-TTCAAATGAGAATCTTCAAAT-TCAAATGAGAATCTTCGAA-TTCAAATAAGAATCTTTG
1 AATCCTCAAATAAGAATCTTTAAGTGTCAAATGAGAATCTTCGAACTTCAAATAACAATCTTTG
7197740 A
1 A
7197741 GGTGTGAAAC
Statistics
Matches: 144, Mismatches: 29, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
55 1 0.01
56 2 0.01
57 5 0.03
58 17 0.12
59 19 0.13
61 35 0.24
62 3 0.02
63 40 0.28
64 18 0.12
65 3 0.02
66 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (64 bp):
AATCCTCAAATAAGAATCTTTAAGTGTCAAATGAGAATCTTCGAACTTCAAATAACAATCTTTG
Found at i:7197576 original size:42 final size:42
Alignment explanation
Indices: 7197523--7197618 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
7197513 TTAAGTGTCG
*
7197523 AATGTGAATCTTCGA-ACTTAAATGACAATCTTTGAATCCTCA
1 AATGAGAATCTTCGAGACTTAAATGACAATCTTTGAAT-CTCA
* ** * *
7197565 AATGAGAATCTTTGAGTGTTAAATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTCGAGACTTAAATGACAATCTTTGAATCTCA
*
7197607 AATAAGAATCTT
1 AATGAGAATCTT
7197619 TGAGGTGTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (42 bp):
AATGAGAATCTTCGAGACTTAAATGACAATCTTTGAATCTCA
Found at i:7197589 original size:43 final size:42
Alignment explanation
Indices: 7197540--7197622 Score: 130
Period size: 43 Copynumber: 2.0 Consensus size: 42
7197530 ATCTTCGAAC
*
7197540 TTAAATGACAATCTTTGAATCCTCAAATGAGAATCTTTGAGTG
1 TTAAATGACAATCTTTGAAT-CTCAAATAAGAATCTTTGAGTG
* *
7197583 TTAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAG
1 TTAAATGACAATCTTTGAATCTCAAATAAGAATCTTTGAG
7197623 GTGTGAAACC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (42 bp):
TTAAATGACAATCTTTGAATCTCAAATAAGAATCTTTGAGTG
Found at i:7197590 original size:21 final size:20
Alignment explanation
Indices: 7197523--7197740 Score: 122
Period size: 20 Copynumber: 10.8 Consensus size: 20
7197513 TTAAGTGTCG
* * *
7197523 AATGTGAATCTTCGAACTTA
1 AATGAGAATCTTTGAATTTA
* *
7197543 AATGACAATCTTTGAATCCTCA
1 AATGAGAATCTTTGAAT--TTA
*
7197565 AATGAGAATCTTTGAGTGTTA
1 AATGAGAATCTTTGAAT-TTA
7197586 AATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTTGAATTT-A
* * *
7197607 AATAAGAATCTTTGAGGTGTGA
1 AATGAGAATCTTTGA-AT-TTA
** * *
7197629 AACCCA-AA-ATTTG---TCA
1 AA-TGAGAATCTTTGAATTTA
* * *
7197645 AATGTGAATCTTCGAATTCA
1 AATGAGAATCTTTGAATTTA
*
7197665 AATGAGAATTTTTGAATTTCA
1 AATGAGAATCTTTGAATTT-A
** *
7197686 AATGAGAATCTTCAAATTCA
1 AATGAGAATCTTTGAATTTA
* *
7197706 AATGAGAATCTTCGAATTCA
1 AATGAGAATCTTTGAATTTA
*
7197726 AATAAGAATCTTTGA
1 AATGAGAATCTTTGA
7197741 GGTGTGAAAC
Statistics
Matches: 153, Mismatches: 33, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
16 6 0.04
17 3 0.02
20 66 0.43
21 53 0.35
22 23 0.15
23 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (20 bp):
AATGAGAATCTTTGAATTTA
Found at i:7197654 original size:59 final size:58
Alignment explanation
Indices: 7197585--7197857 Score: 282
Period size: 59 Copynumber: 4.6 Consensus size: 58
7197575 TTTGAGTGTT
*
7197585 AAATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTC
1 AAATGTGAATCTTTGAA-TTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTC
* * * * * * ** * *
7197644 AAATGTGAATCTTCGAATTCAAATGAGAATTTTTGA-ATTTCAAA-TGAGAATCTTCAAATTC
1 AAATGTGAATCTTTGAATTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAAT-TT----GTC
* * *
7197705 AAATGAGAATCTTCGAATTCAAATAAGAATCTTTGAGGTGTGAAACTCAAAATTTGTC
1 AAATGTGAATCTTTGAATTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTC
* *
7197763 AAATGTGAATTTTTGAATTTCAAATAAGAATATTTGAGGTGTGAAACCCAAAATTTGTC
1 AAATGTGAATCTTTGAA-TTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTC
* **
7197822 GAATGTGAATCTTCAAATTCAAATGAA-AATCTTTGA
1 AAATGTGAATCTTTGAATTCAAAT-AAGAATCTTTGA
7197858 ATTTCAAATA
Statistics
Matches: 175, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
56 4 0.02
57 7 0.04
58 48 0.27
59 69 0.39
61 35 0.20
62 7 0.04
63 5 0.03
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.34
Consensus pattern (58 bp):
AAATGTGAATCTTTGAATTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTC
Found at i:7197667 original size:20 final size:20
Alignment explanation
Indices: 7197642--7197737 Score: 138
Period size: 20 Copynumber: 4.8 Consensus size: 20
7197632 CCAAAATTTG
*
7197642 TCAAATGTGAATCTTCGAAT
1 TCAAATGAGAATCTTCGAAT
* *
7197662 TCAAATGAGAATTTTTGAATT
1 TCAAATGAGAATCTTCGAA-T
*
7197683 TCAAATGAGAATCTTCAAAT
1 TCAAATGAGAATCTTCGAAT
7197703 TCAAATGAGAATCTTCGAAT
1 TCAAATGAGAATCTTCGAAT
*
7197723 TCAAATAAGAATCTT
1 TCAAATGAGAATCTT
7197738 TGAGGTGTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 50 0.75
21 17 0.25
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (20 bp):
TCAAATGAGAATCTTCGAAT
Found at i:7197689 original size:41 final size:40
Alignment explanation
Indices: 7197642--7197737 Score: 138
Period size: 41 Copynumber: 2.4 Consensus size: 40
7197632 CCAAAATTTG
* * * *
7197642 TCAAATGTGAATCTTCGAATTCAAATGAGAATTTTTGAATT
1 TCAAATGAGAATCTTCAAATTCAAATGAGAATCTTCGAA-T
7197683 TCAAATGAGAATCTTCAAATTCAAATGAGAATCTTCGAAT
1 TCAAATGAGAATCTTCAAATTCAAATGAGAATCTTCGAAT
*
7197723 TCAAATAAGAATCTT
1 TCAAATGAGAATCTT
7197738 TGAGGTGTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 15 0.30
41 35 0.70
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (40 bp):
TCAAATGAGAATCTTCAAATTCAAATGAGAATCTTCGAAT
Found at i:7197750 original size:119 final size:123
Alignment explanation
Indices: 7197518--7197799 Score: 394
Period size: 119 Copynumber: 2.3 Consensus size: 123
7197508 AATCTTTAAG
* * * ** *
7197518 TGTCGAATGTGAATCTTCGAACTT-AAATGACAATCTTTGAATCCTCAAATGAGAATCTTTGAGT
1 TGTCAAATGTGAATCTTCGAACTTCAAATGAGAATATTTGAATCCTCAAATGAGAATCTTCAAAT
* *
7197582 GTTAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATT
66 GTCAAATGAGAATCTTCGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATT
* *
7197640 TGTCAAATGTGAATCTTCGAA-TTCAAATGAGAATTTTTGAAT-TTCAAATGAGAATCTTCAAAT
1 TGTCAAATGTGAATCTTCGAACTTCAAATGAGAATATTTGAATCCTCAAATGAGAATCTTCAAAT
*
7197703 -TCAAATGAGAATCTTCGAA-TTCAAATAAGAATCTTTGAGGTGTGAAACTCAAAATT
66 GTCAAATGAGAATCTTCGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATT
* * * *
7197759 TGTCAAATGTGAATTTTTGAATTTCAAATAAGAATATTTGA
1 TGTCAAATGTGAATCTTCGAACTTCAAATGAGAATATTTGA
7197800 GGTGTGAAAC
Statistics
Matches: 144, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
119 55 0.38
120 34 0.24
121 19 0.13
122 36 0.25
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (123 bp):
TGTCAAATGTGAATCTTCGAACTTCAAATGAGAATATTTGAATCCTCAAATGAGAATCTTCAAAT
GTCAAATGAGAATCTTCGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATT
Found at i:7197852 original size:20 final size:20
Alignment explanation
Indices: 7197829--7197875 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7197819 GTCGAATGTG
*
7197829 AATCTTCAAATTCAAATGAA
1 AATCTTCAAATTCAAATAAA
* *
7197849 AATCTTTGAATTTCAAATAAA
1 AATC-TTCAAATTCAAATAAA
7197870 AATCTT
1 AATCTT
7197876 TGAGATGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (20 bp):
AATCTTCAAATTCAAATAAA
Found at i:7197865 original size:21 final size:21
Alignment explanation
Indices: 7197839--7197878 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7197829 AATCTTCAAA
*
7197839 TTCAAATGAAAATCTTTGAAT
1 TTCAAATAAAAATCTTTGAAT
7197860 TTCAAATAAAAATCTTTGA
1 TTCAAATAAAAATCTTTGA
7197879 GATGTGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (21 bp):
TTCAAATAAAAATCTTTGAAT
Found at i:7198156 original size:114 final size:114
Alignment explanation
Indices: 7197900--7198317 Score: 667
Period size: 114 Copynumber: 3.7 Consensus size: 114
7197890 CTAAAGTTTG
* * *
7197900 TTTGGATGCGAATCTCTAAATTTTTGAGTGAGAACCTTTGAACTTAGATGTGAAACTCTAAGATT
1 TTTGGATGCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
**
7197965 TCTTGGATGTGAATCTCC-AAATTTGAACGAAAAGCTTTGAACTCAACT
66 TCTTGGATGTGAATCTCCAAAATTCAAACGAAAAGCTTTGAACTCAACT
*
7198013 TTTGGATTCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
1 TTTGGATGCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
* *
7198078 TCTTGGATGTGAATCTCCAAAATTCAAACGAAAAGCTTTAAACTCAATT
66 TCTTGGATGTGAATCTCCAAAATTCAAACGAAAAGCTTTGAACTCAACT
* *
7198127 TTTGGATGCGAATCTCTAAATTTTTAAGTGAGAACCTTTGAACTTAGATGTGAAACTCTAAGATT
1 TTTGGATGCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
* * *
7198192 TCTTGGATGTGAGTCTTCAAAATTCAAACGAAAAGCTTTGAACTTAACT
66 TCTTGGATGTGAATCTCCAAAATTCAAACGAAAAGCTTTGAACTCAACT
* * *
7198241 TTTGGATGCGAATCTTTAAATTTTTGAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGTTT
1 TTTGGATGCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
* *
7198306 TATTGCATGTGA
66 TCTTGGATGTGA
7198318 GCTTTTGAAC
Statistics
Matches: 281, Mismatches: 23, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
113 79 0.28
114 202 0.72
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (114 bp):
TTTGGATGCGAATCTCTAAATTTTTAAGTGAAAACCTTTGAACTTAGATGTAAAACTCTAAGATT
TCTTGGATGTGAATCTCCAAAATTCAAACGAAAAGCTTTGAACTCAACT
Found at i:7198772 original size:45 final size:44
Alignment explanation
Indices: 7198715--7198818 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 44
7198705 CAATGAGCAT
* *
7198715 TTTA-TTTTTCAAAGTAATGGTGCCTT-TATTTA-AAGGAGCTTTG
1 TTTATTTTTTCAAAGTAATGGTG-CTTCTATTTAGAA-AAGCTTTA
** *
7198758 TTTATTTTTTTCAAAGTTGTGGTGCTTCTGTTTAGAAAAGCTTTA
1 TTTA-TTTTTTCAAAGTAATGGTGCTTCTATTTAGAAAAGCTTTA
7198803 TTTATTTTTTCAAAGT
1 TTTATTTTTTCAAAGT
7198819 TGTTGAGCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.08
44 15 0.29
45 31 0.60
46 2 0.04
ACGTcount: A:0.24, C:0.09, G:0.16, T:0.51
Consensus pattern (44 bp):
TTTATTTTTTCAAAGTAATGGTGCTTCTATTTAGAAAAGCTTTA
Found at i:7198837 original size:44 final size:44
Alignment explanation
Indices: 7198751--7198861 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
7198741 TATTTAAAGG
* * * *
7198751 AGCTTTGTTTATTTTTTTCAAAGTTGTGGTGCTTCTGTTTAGAAA
1 AGCTTTATTTA-TTTTTTCAAAGTTGTGGAGCCTCTGATTAGAAA
* **
7198796 AGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGG
1 AGCTTTATTTATTTTTTCAAAGTTGTGGAGCCTCTGATTAGAAA
*
7198840 AGCTTTATTTATGTTTCTCAAA
1 AGCTTTATTTAT-TTTTTCAAA
7198862 ATCATTGAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 39 0.68
45 18 0.32
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.49
Consensus pattern (44 bp):
AGCTTTATTTATTTTTTCAAAGTTGTGGAGCCTCTGATTAGAAA
Found at i:7198882 original size:45 final size:44
Alignment explanation
Indices: 7198781--7198886 Score: 122
Period size: 45 Copynumber: 2.4 Consensus size: 44
7198771 AAGTTGTGGT
* ** * * **
7198781 GCTTCTGTTTAGAAAAGCTTTATTTATTTTTTCAAAGTTGTTGA
1 GCTTCTGATTAGAGGAGCTTTATTTATTTTCTCAAAATCATTGA
*
7198825 GCCTCTGATTAGAGGAGCTTTATTTATGTTTCTCAAAATCATTGA
1 GCTTCTGATTAGAGGAGCTTTATTTAT-TTTCTCAAAATCATTGA
*
7198870 GCTTCTGCTTAGAGGAG
1 GCTTCTGATTAGAGGAG
7198887 TTTTGATCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 23 0.45
45 28 0.55
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (44 bp):
GCTTCTGATTAGAGGAGCTTTATTTATTTTCTCAAAATCATTGA
Found at i:7198936 original size:11 final size:11
Alignment explanation
Indices: 7198906--7198937 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
7198896 AAATTTTAAC
7198906 AAAAAAAAA-T
1 AAAAAAAAAGT
7198916 AAAAAAAAAGT
1 AAAAAAAAAGT
7198927 AAAAAAAAAGT
1 AAAAAAAAAGT
7198938 GTCAAGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.09
Consensus pattern (11 bp):
AAAAAAAAAGT
Found at i:7200100 original size:119 final size:120
Alignment explanation
Indices: 7199821--7200110 Score: 319
Period size: 119 Copynumber: 2.4 Consensus size: 120
7199811 CATATTTCCA
* * *
7199821 ATTTCTAAAAAA-CTATTTTTGAGGAAAAGTTGAAAGTATC-AATTTTCCTTAAAAATAAAATTT
1 ATTTC-AAAAAAGC-ATTTTTAAGGAAAAATTGAAAGTATCAAATTTT-CTTGAAAATAAAA-TT
* * *
7199884 TCTAAAACTAAAACATTTTTTAGGAAAAGTTAAAAGTATCAATTTTTCTAAAATAAAAT
62 TCTAAAACAAAAACATTTTTGAGGAAAAGTTAAAAGTACCAATTTTTCTAAAATAAAAT
* * * * *
7199943 ATTTCCAAATAGTA-TTTTAAGGAAAAATTGAAAATATCAAATTTTCTTGAAATTAAAA-TT-TA
1 ATTTCAAAAAAGCATTTTTAAGGAAAAATTGAAAGTATCAAATTTTCTTGAAAATAAAATTTCTA
*
7200005 AAA-AAAAAGCA-TTTTGAGGAAAAGTT-GAAGTACCAATTTTTCTTAAAAATAAAA-
66 AAACAAAAA-CATTTTTGAGGAAAAGTTAAAAGTACCAATTTTTC-T-AAAATAAAAT
*
7200059 ATTATCAAGAAAAGCATTTTTAAGGAAAAATTGAAAGTATCAATTTTTCTTG
1 ATT-TCAA-AAAAGCATTTTTAAGGAAAAATTGAAAGTATCAAATTTTCTTG
7200111 TATAAATGTA
Statistics
Matches: 143, Mismatches: 17, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
115 14 0.10
116 22 0.15
117 19 0.13
118 7 0.05
119 33 0.23
120 32 0.22
121 11 0.08
122 5 0.03
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.36
Consensus pattern (120 bp):
ATTTCAAAAAAGCATTTTTAAGGAAAAATTGAAAGTATCAAATTTTCTTGAAAATAAAATTTCTA
AAACAAAAACATTTTTGAGGAAAAGTTAAAAGTACCAATTTTTCTAAAATAAAAT
Found at i:7200116 original size:59 final size:58
Alignment explanation
Indices: 7199820--7200109 Score: 257
Period size: 59 Copynumber: 4.9 Consensus size: 58
7199810 ACATATTTCC
* * *
7199820 AATTTCTAAAAAA-CTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
1 AATTTCAAAAAAAGC-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT--AAATAAA
* * * * *
7199880 ATTTTCTAAAACTAAAACATTTTTTAGGAAAAGTTAAAAGTATCAATTTTTCTAAAATAAA
1 AATTTC-AAAA--AAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAATAAA
* * * * * * *
7199941 ATATTTC-CAAATAGTA-TTTTAAGGAAAAATTGAAAATATCAAATTTTCTTGAAATTAA
1 A-ATTTCAAAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAATAAA
* * *
7199999 AATTTAAAAAAAAAGCA-TTTTGAGGAAAAGTTG-AAGTACCAATTTTTCTTAAAAATAAA
1 AATTT-CAAAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT--AAATAAA
* *
7200058 AATTATCAAGAAAAGCATTTTTAAGGAAAAATTGAAAGTATCAATTTTTCTT
1 AATT-TCAAAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTT
7200110 GTATAAATGT
Statistics
Matches: 184, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
57 32 0.17
58 24 0.13
59 39 0.21
60 22 0.12
61 27 0.15
62 4 0.02
63 35 0.19
64 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.36
Consensus pattern (58 bp):
AATTTCAAAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAATAAA
Found at i:7212046 original size:44 final size:44
Alignment explanation
Indices: 7211996--7212356 Score: 318
Period size: 44 Copynumber: 8.3 Consensus size: 44
7211986 CAAAGAGTCT
7211996 TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
1 TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
* * * * *
7212040 TTTATTTTTCCAAAGTCGTTAAGCCTCTTATTAGA-AAAGCTTTG
1 TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAA-CTTTG
*
7212084 TTTATTTTTCTAAAAAGTTGTTGAGCCTC----T----G-A-TTTG
1 TTTATTTTT-T-CAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
* * *
7212120 TTTATTTTTCCAAAAAGTTATTAAGCCTCTGATTAGA-GAAGCTTTG
1 TTTATTTTTTC--AAAGTTGTTGAGCCTCTGATTAGAGGAA-CTTTG
** * * **
7212166 TTTATTTTTTCAAAGTCATTGAGCTTCTTATTAGAGGAGTTTTG
1 TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
* * * * *
7212210 TTTATTTTTTTAAAGTTGTTGAGCATCTGATTATAGGAGCCTTG
1 TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
* * *
7212254 TTTATTTTTTAAAAAGTCGTTGAGCCTTTGATTAGAGGAACTTTG
1 TTTATTTTTT-CAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
* *
7212299 TTTA-TTTTTCAAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTG
1 TTTATTTTTTC--AAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
7212344 TTTA-TTTTTCAAA
1 TTTATTTTTTCAAA
7212357 AAATCGTTGA
Statistics
Matches: 257, Mismatches: 41, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
36 27 0.11
38 1 0.00
40 1 0.00
42 1 0.00
43 6 0.02
44 121 0.47
45 72 0.28
46 28 0.11
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.46
Consensus pattern (44 bp):
TTTATTTTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAACTTTG
Found at i:7212127 original size:36 final size:36
Alignment explanation
Indices: 7212080--7212153 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
7212070 TTAGAAAAGC
* * *
7212080 TTTGTTTATTTTTCTAAAAAGTTGTTGAGCCTCTGA
1 TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGA
7212116 TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGA
1 TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGA
7212152 TT
1 TT
7212154 AGAGAAGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (36 bp):
TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGA
Found at i:7212220 original size:45 final size:45
Alignment explanation
Indices: 7212116--7212409 Score: 295
Period size: 45 Copynumber: 6.5 Consensus size: 45
7212106 GAGCCTCTGA
* * * *
7212116 TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGATTAGAGAAGC
1 TTTGTTTATTTTT-TAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
* ** * * *
7212162 TTTGTTTATTTTTT-CAAAGTCATTGAGCTTCTTATTAGAGGAGT
1 TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
* * *
7212206 TTTGTTTATTTTTT-TAAAGTTGTTGAGCATCTGATTATAGGAGC
1 TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
* * * *
7212250 CTTGTTTATTTTTTAAAAAGTCGTTGAGCCTTTGATTAGAGGAAC
1 TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
* *
7212295 TTTGTTTATTTTTCAAAAAGTTGTTAAGCCTCTGATTAGAGGAGC
1 TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
* * * * * * *
7212340 TTTGTTTATTTTTCAAAAAATCGTTGAGTCTATGTTTAGAGGAGTT
1 TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAG-C
* * *
7212386 TTTGTTCATTCTCTAAAAAGTTGT
1 TTTGTTTATTTTTTAAAAAGTTGT
7212410 AAACCTCTGC
Statistics
Matches: 205, Mismatches: 41, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
44 73 0.36
45 101 0.49
46 31 0.15
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (45 bp):
TTTGTTTATTTTTTAAAAAGTTGTTGAGCCTCTGATTAGAGGAGC
Found at i:7212417 original size:90 final size:88
Alignment explanation
Indices: 7212116--7212418 Score: 326
Period size: 90 Copynumber: 3.4 Consensus size: 88
7212106 GAGCCTCTGA
* *
7212116 TTTGTTTATTTTTCCAAAAAGTTATTAAGCCTCTGATTAGAGAAGCTTTGTTTATTTTTTC--AA
1 TTTGTTTATTTTT--AAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTA-TTTTTCAAAA
*
7212179 AGTCATTGAGCTTCTT-ATTAGAGGAGT
63 AGTCGTTGAG--TCTTGATTAGAGGAGT
** * * * * *
7212206 TTTGTTTATTTTTTTAAAGTTGTTGAGCATCTGATTATAGGAGCCTTGTTTATTTTTTAAAAAGT
1 TTTGTTTATTTTTAAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAAAGT
* **
7212271 CGTTGAGCCTTTGATTAGAGGAAC
66 CGTTGAGTC-TTGATTAGAGGAGT
*
7212295 TTTGTTTATTTTTCAAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAAAA
1 TTTGTTTATTTTT-AAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAAAG
*
7212360 TCGTTGAGTCTATGTTTAGAGGAGTT
65 TCGTTGAGTCT-TGATTAGAGGAG-T
* * *
7212386 TTTGTTCATTCTCTAAAAAGTTG-TAAACCTCTG
1 TTTGTTTATT-TTTAAAAAGTTGTTAAGCCTCTG
7212419 CGTAGGGATG
Statistics
Matches: 177, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
87 6 0.03
88 33 0.19
89 34 0.19
90 84 0.47
91 18 0.10
92 2 0.01
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (88 bp):
TTTGTTTATTTTTAAAAAGTTGTTAAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAAAGT
CGTTGAGTCTTGATTAGAGGAGT
Found at i:7213055 original size:11 final size:11
Alignment explanation
Indices: 7213041--7213066 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7213031 TTTGCATTTT
7213041 TTTCTAGAAAA
1 TTTCTAGAAAA
7213052 TTTCTAGAAAA
1 TTTCTAGAAAA
7213063 TTTC
1 TTTC
7213067 CATATTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (11 bp):
TTTCTAGAAAA
Found at i:7214065 original size:60 final size:60
Alignment explanation
Indices: 7213703--7214066 Score: 338
Period size: 60 Copynumber: 6.2 Consensus size: 60
7213693 TGATTTTCCA
* * *
7213703 AAAATAAAATTTTCAAAAAAATATATTTTTGAGAAAAAGTTGAAAGCATCAATTTTTCTTA
1 AAAATAAAATTTT-AAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * * ** *
7213764 AAAATAAAAATTTT-TAAAAATATATTTTTAAGGAACAGTTGAAAGTATTGATTTTCCTTG
1 AAAAT-AAAATTTTAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * * * *
7213824 AAAACAAAAATTTT-CAAAAA-ATA-TTTTGAGAAAAAATTAAAAGTATCAA-TTTTCTTTG
1 AAAA-TAAAATTTTAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTG
* *
7213882 AAAATTTAAA----AAAAAAA-ACATTTTT-ATGGAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAA-TAAAATTTTAAAAAAATATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTTCTTG
* * * * * *
7213938 AAAATAAAATTGTTAAAAAAA-ACATTTATGAGGAAAAGTTGGAAGTACCAATTTTTCATA
1 AAAATAAAATT-TTAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * *
7213998 AAAATAAAATTTTAAAAAAATATATTTTTTAGTAAAAGTTGAAAGTATAAATTTTTCTTG
1 AAAATAAAATTTTAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* *
7214058 GAGATAAAA
1 AAAATAAAA
7214067 ACCATAAAAT
Statistics
Matches: 245, Mismatches: 44, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
55 12 0.05
56 28 0.11
57 9 0.04
58 29 0.12
59 12 0.05
60 141 0.58
61 6 0.02
62 8 0.03
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (60 bp):
AAAATAAAATTTTAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:7215582 original size:20 final size:20
Alignment explanation
Indices: 7215544--7215584 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7215534 AAAATATTTC
* *
7215544 AATATTTAAAAAATTAAAAA
1 AATATATAAAAAATCAAAAA
*
7215564 AATATATAAAAACTCAAAAA
1 AATATATAAAAAATCAAAAA
7215584 A
1 A
7215585 TAAAAAATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AATATATAAAAAATCAAAAA
Found at i:7215591 original size:17 final size:19
Alignment explanation
Indices: 7215560--7215599 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
7215550 TAAAAAATTA
7215560 AAAAAATATATAAAAACTC
1 AAAAAATATATAAAAACTC
*
7215579 AAAAAATA-A-AAAATCTC
1 AAAAAATATATAAAAACTC
7215596 AAAA
1 AAAA
7215600 TTTTAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
18 1 0.05
19 8 0.40
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAAATATATAAAAACTC
Found at i:7215631 original size:10 final size:9
Alignment explanation
Indices: 7215618--7215652 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
7215608 AAAATACCAA
7215618 AAAAAATTCC
1 AAAAAATT-C
7215628 AAAAAATTC
1 AAAAAATTC
7215637 AAAAAATTC
1 AAAAAATTC
7215646 AAAAAAT
1 AAAAAAT
7215653 GATATTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAAAATTC
Found at i:7215783 original size:20 final size:20
Alignment explanation
Indices: 7215726--7215786 Score: 81
Period size: 19 Copynumber: 3.1 Consensus size: 20
7215716 AATGAAAATA
7215726 AAAAAATTG-AAAATTTTTT
1 AAAAAATTGTAAAATTTTTT
* *
7215745 AAAAAA-TATAAAAATTTTT
1 AAAAAATTGTAAAATTTTTT
*
7215764 AAAAAATTGTAAATTTTTTT
1 AAAAAATTGTAAAATTTTTT
7215784 AAA
1 AAA
7215787 TTTTTTTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 1 0.03
19 21 0.60
20 13 0.37
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAAAATTGTAAAATTTTTT
Found at i:7216031 original size:34 final size:33
Alignment explanation
Indices: 7215974--7216038 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
7215964 TTTTAAGGAT
* *
7215974 TTTTTTTAATTTTAATAAATTTTTATTTTTTGA
1 TTTTTTTAATTCTAATAAATTTTTAATTTTTGA
* *
7216007 TTTTTTTAAGTTCTCATAATTTTTTAATTTTT
1 TTTTTTTAA-TTCTAATAAATTTTTAATTTTT
7216039 ACAATTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 9 0.33
34 18 0.67
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (33 bp):
TTTTTTTAATTCTAATAAATTTTTAATTTTTGA
Found at i:7216062 original size:26 final size:27
Alignment explanation
Indices: 7216033--7216084 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
7216023 TAATTTTTTA
7216033 ATTTTTACAATTTT-TAAAAATATTTC
1 ATTTTTACAATTTTGTAAAAATATTTC
*
7216059 ATTTTTATAATTTTGTAAAAATATTT
1 ATTTTTACAATTTTGTAAAAATATTT
7216085 TAGATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (27 bp):
ATTTTTACAATTTTGTAAAAATATTTC
Found at i:7216099 original size:20 final size:19
Alignment explanation
Indices: 7216061--7216124 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
7216051 AATATTTCAT
*
7216061 TTTTATAATTTTGTAAAAATA
1 TTTTAGAATTTT-T-AAAATA
*
7216082 TTTTAGATTTTTTTAAAA-A
1 TTTTAGA-ATTTTTAAAATA
7216101 TTTGTAGAATTTTTAAAAT-
1 TTT-TAGAATTTTTAAAATA
7216120 TTTTA
1 TTTTA
7216125 AAAACAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 2 0.05
19 16 0.43
20 8 0.22
21 7 0.19
22 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTAGAATTTTTAAAATA
Found at i:7216120 original size:9 final size:9
Alignment explanation
Indices: 7216032--7216127 Score: 52
Period size: 9 Copynumber: 10.2 Consensus size: 9
7216022 ATAATTTTTT
*
7216032 AATTTTTAC
1 AATTTTTAA
7216041 AATTTTTAAA
1 AATTTTT-AA
*
7216051 AATATTT--
1 AATTTTTAA
* *
7216058 CATTTTTAT
1 AATTTTTAA
7216067 AATTTTGTAAA
1 AATTTT-T-AA
7216078 AATATTTTAGA
1 AAT-TTTTA-A
**
7216089 TTTTTTTAAA
1 AATTTTT-AA
* *
7216099 AATTTGTAG
1 AATTTTTAA
7216108 AATTTTTAA
1 AATTTTTAA
7216117 AATTTTTAA
1 AATTTTTAA
7216126 AA
1 AA
7216128 ACAATTTTCC
Statistics
Matches: 65, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
7 5 0.08
9 31 0.48
10 18 0.28
11 8 0.12
12 3 0.05
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (9 bp):
AATTTTTAA
Found at i:7217573 original size:193 final size:193
Alignment explanation
Indices: 7217241--7217591 Score: 630
Period size: 193 Copynumber: 1.8 Consensus size: 193
7217231 TTTTTATTTA
*
7217241 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAAATTTTTTATTGAAATAATTCTTAAAATGT
1 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAAACTTTTTATTGAAATAATTCTTAAAATGT
*
7217306 TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGGTTTCTTAAAGCATCTCTACT
66 TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCTCTACT
*
7217371 CATAATACTTTTAGAATCTCATCTTTAGAGGCTCGAATTTATTTTTCGTAAGAAAATGTCATG
131 CAGAATACTTTTAGAATCTCATCTTTAGAGGCTCGAATTTATTTTTCGTAAGAAAATGTCATG
* * *
7217434 TTAAAAAAATTTATTCTCGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATGT
1 TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAAACTTTTTATTGAAATAATTCTTAAAATGT
*
7217499 TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
66 TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCTCTACT
*
7217564 CGGAATACTTTTAGAATCTCATCTTTAG
131 CAGAATACTTTTAGAATCTCATCTTTAG
7217592 GAGTTCTAAA
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
193 150 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (193 bp):
TTAAAAAAAATTATTCTCGAGAAAAATAAATCAAAAACTTTTTATTGAAATAATTCTTAAAATGT
TCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAAAGATTTCTTAAAGCATCTCTACT
CAGAATACTTTTAGAATCTCATCTTTAGAGGCTCGAATTTATTTTTCGTAAGAAAATGTCATG
Found at i:7219098 original size:23 final size:23
Alignment explanation
Indices: 7219068--7219130 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
7219058 ATAAAGCTTG
*
7219068 TTGGGATTCAAATCCCCGATCTT
1 TTGGGATTCAAATCCCAGATCTT
7219091 TTGGGATTCAAATCCCAGATCTT
1 TTGGGATTCAAATCCCAGATCTT
* *
7219114 CTGGGATTCGAATCCCA
1 TTGGGATTCAAATCCCA
7219131 TTTTTCAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (23 bp):
TTGGGATTCAAATCCCAGATCTT
Found at i:7219365 original size:3 final size:3
Alignment explanation
Indices: 7219357--7219403 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7219347 TAAATAAATA
7219357 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7219404 ATGGTGTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7219710 original size:45 final size:45
Alignment explanation
Indices: 7219537--7220651 Score: 1370
Period size: 45 Copynumber: 23.9 Consensus size: 45
7219527 TAGTTCGATA
* * *
7219537 GAAAATAGCTCCTCTTAACAGAGGTTCAACAACTTTAAAAATCTCATCTT
1 GAAAA-AGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAA--TC-TCTT
*
7219587 AGAAAAA-TTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
1 -GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTC-T-T
* * *
7219635 TAGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCAT
1 GA-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* *
7219681 GAAAAGGCTACTCTCAGCAGAGGCTCAACAACTTTAAAAATTCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAA-TCTCTT
* * *
7219728 GAAAAAACTCCTCTCAACAAAGGCTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* * *
7219773 GAAAAGGGCTCCTCTCAGCAAAGACTCAACAACTTTAAAATTCTCTT
1 GAAAA-AGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCTT
7219820 GAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAAATCTCTT
1 GAAAA-AGCTCCTCTCAGCAGAGGCTCAACAACTTT--AAAATCTCTT
* * *
7219868 GGAAATGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAATTCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCTT
* *
7219914 GAAAAAGCTCCTCTCAACAAAGGCTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
*
7219959 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
*
7220004 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTC-T-T
* *
7220052 GGAAAAGCTCCTCTCAGCAGAGGTTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* * *
7220097 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCAT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* * * *
7220142 GAAAAGGCTCCTCTCAGCAGAGGTTTAATAACTTTGAAAATCTCATCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTC-T-T
*
7220190 GGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA---TC-TCTT
* * *
7220239 GGAAAAGCTCCTCTCAGCAAAAGCTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* * *
7220284 AAAAAAGCTCCTCTCAACAGAGGCTCAATAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTC-T-T
*
7220332 GAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
7220377 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTC-T-T
* * *
7220425 GGAAAAGCTTCTCTCAGCAGAGGCTTAACAACTTTAAAATTCTCATCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA---TC-TCTT
* *
7220474 GGAAAAGCTCCTCTCAGCAGAGGCTCAACAATTTTAAAATCTCTT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* *
7220519 GAAAAAGTTCCTCTCAACAGAGGCTCAACAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTC-T-T
* * **
7220567 -AGAAATGCTCCTCTCAACAGAACCTCAACAACTTTAAAATCTCTT
1 GA-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
* *
7220612 GAAAAAGCTCCTCTCAACAGAGGCTCAACAATTTTAAAAT
1 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAT
7220652 ATCATCTGTT
Statistics
Matches: 942, Mismatches: 86, Indels: 78
0.85 0.08 0.07
Matches are distributed among these distances:
45 339 0.36
46 129 0.14
47 143 0.15
48 182 0.19
49 133 0.14
50 7 0.01
51 9 0.01
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (45 bp):
GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTT
Found at i:7219850 original size:93 final size:90
Alignment explanation
Indices: 7219537--7220651 Score: 1360
Period size: 93 Copynumber: 11.9 Consensus size: 90
7219527 TAGTTCGATA
* * **
7219537 GAAAATAGCTCCTCTTAACAGAGGTTCAACAACTTTAAAAATCTCATCTTAGAAAAATTCCTCTC
1 GAAAA-AGCTCCTCTCAACAGAGGCTCAACAACTTT-AAAA--TC-TCTT-GAAAAGCTCCTCTC
7219602 AGCAGAGGCTCAACAACTTTAAAATTCTCATCT
60 AGCAGAGGCTCAACAACTTTAAAATTCTC-T-T
* ** * *
7219635 TAGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCATGAAAAGGCTACTCTCAGCA
1 GA-AAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTGAAAA-GCTCCTCTCAGCA
7219700 GAGGCTCAACAACTTTAAAAATTCTCTT
64 GAGGCTCAACAACTTT-AAAATTCTCTT
* *
7219728 GAAAAAACTCCTCTCAACAAAGGCTCAACAACTTTAAAATCTCTTGAAAAGGGCTCCTCTCAGCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTGAAAA--GCTCCTCTCAGCA
* *
7219793 AAGACTCAACAACTTTAAAATTCTCTT
64 GAGGCTCAACAACTTTAAAATTCTCTT
* * *
7219820 GAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAAATCTCTTGGAAATGCTCCTTTCAG
1 GAAAA-AGCTCCTCTCAACAGAGGCTCAACAACTTT--AAAATCTCTT-GAAAAGCTCCTCTCAG
7219885 CAGAGGCTCAACAACTTTAAAATTCTCTT
62 CAGAGGCTCAACAACTTTAAAATTCTCTT
* *
7219914 GAAAAAGCTCCTCTCAACAAAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTCAACAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTG-AAAAGCTCCTCTCAGCAG
7219979 AGGCTCAACAACTTTAAAA-TCTCTT
65 AGGCTCAACAACTTTAAAATTCTCTT
7220004 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAGCTCCTCTCAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCTC-T-T-GAAAAGCTCCTCTCAG
*
7220069 CAGAGGTTCAACAACTTTAAAA-TCTCTT
62 CAGAGGCTCAACAACTTTAAAATTCTCTT
* *
7220097 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATGAAAAGGCTCCTCTCAGCAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTGAAAA-GCTCCTCTCAGCAG
* * *
7220162 AGGTTTAATAACTTTGAAAA-TCTCATCT
65 AGGCTCAACAACTTT-AAAATTCTC-T-T
* *
7220190 GGAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGGAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAA---TC-TCTT-GAAAAGCTCCTCTCA
* *
7220255 GCAAAAGCTCAACAACTTTAAAA-TCTCTT
61 GCAGAGGCTCAACAACTTTAAAATTCTCTT
* * *
7220284 AAAAAAGCTCCTCTCAACAGAGGCTCAATAACTTTAAAAATCTCATCTGAAAAAGCTCATCTCAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCTC-T-TG-AAAAGCTCCTCTCAG
7220349 CAGAGGCTCAACAACTTTAAAA-TCTCTT
62 CAGAGGCTCAACAACTTTAAAATTCTCTT
* *
7220377 GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAGCTTCTCTCAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCTC-T-T-GAAAAGCTCCTCTCAG
*
7220442 CAGAGGCTTAACAACTTTAAAATTCTCATCTT
62 CAGAGGCTCAACAACTTTAAAA-T-TC-TCTT
* * * * *
7220474 GGAAAAGCTCCTCTCAGCAGAGGCTCAACAATTTTAAAATCTCTTGAAAAAGTTCCTCTCAACAG
1 GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTG-AAAAGCTCCTCTCAGCAG
*
7220539 AGGCTCAACAACTTTAAAAATCTCATCT
65 AGGCTCAACAACTTTAAAATTCTC-T-T
* ** *
7220567 -AGAAATGCTCCTCTCAACAGAACCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTCAACA
1 GA-AAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTG-AAAAGCTCCTCTCAGCA
*
7220631 GAGGCTCAACAATTTTAAAAT
64 GAGGCTCAACAACTTTAAAAT
7220652 ATCATCTGTT
Statistics
Matches: 907, Mismatches: 75, Indels: 75
0.86 0.07 0.07
Matches are distributed among these distances:
89 5 0.01
90 69 0.08
91 64 0.07
92 75 0.08
93 401 0.44
94 140 0.15
95 27 0.03
96 23 0.03
97 68 0.07
98 32 0.04
99 3 0.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (90 bp):
GAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCTTGAAAAGCTCCTCTCAGCAGA
GGCTCAACAACTTTAAAATTCTCTT
Done.