Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 30 of 138
Found at i:7220337 original size:235 final size:230
Alignment explanation
Indices: 7219562--7220650 Score: 1383
Period size: 235 Copynumber: 4.7 Consensus size: 230
7219552 TAACAGAGGT
*
7219562 TCAACAACTTTAAAAATCTCATCTTAGAAAAA-TTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
1 TCAACAACTTT-AAAA--TC-TCTTA-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
* * * * * *
7219626 TTCTCATCTTAGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCATGAAAAGGCTA
61 ATCTCATCTGA-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTC
* *
7219691 CTCTCAGCAGAGGCTCAACAACTTTAAAAAT-TCTCTTGAAAAAACTCCTCTCAACAAAGGCTCA
125 CTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCTC-TGAAAAAGCTCCTCTCAACAGAGGCTCA
7219755 ACAACTTTAAAATCTCTT-GAAAAGGGCTCCTCTCAGC-AAAGAC
189 ACAACTTTAAAATCTCTTGGAAAA--GCTCCTCTCAGCAAAAG-C
*
7219798 TCAACAACTTTAAAATTCTCTTGAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAAAT
1 TCAACAACTTTAAAA-TCTCTT-AAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAAAT
* * *
7219863 CTC-T-TGGAAATGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAAGCTCCT
63 CTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCTTGAAAAAGCTCCT
* *
7219926 CTCAACAAAGGCTCAACAACTTT-AAAATCTCT-TGAAAAAGCTCCTCTCAACAGAGGCTCAACA
127 CTCAGCAGAGGCTCAACAACTTTAAAAATCTCTCTGAAAAAGCTCCTCTCAACAGAGGCTCAACA
* * * *
7219989 ACTTTAAAATCTCTTGAAAAAGCTCCTCTCAACAGAGGC
192 ACTTTAAAATCTCTTGGAAAAGCTCCTCTCAGCAAAAGC
** *
7220028 TCAACAACTTTAAAAATCTCATCTGGAAAAGCTCCTCTCAGCAGAGGTTCAACAACTTT-AAAAT
1 TCAACAACTTT-AAAATCTC-T-TAAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAAT
* * * *
7220092 CTC-T-TGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATGAAAAGGCTCCTC
63 CTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTC
* * * * * *
7220155 TCAGCAGAGGTTTAATAACTTTGAAAATCTCATCTGGAAAAGCTCCTCTCAGCAGAGGCTCAACA
128 TCAGCAGAGGCTCAACAACTTTAAAAATCTC-TCTGAAAAAGCTCCTCTCAACAGAGGCTCAACA
7220220 ACTTTAAAATTCTCATCTTGGAAAAGCTCCTCTCAGCAAAAGC
192 ACTTTAAAA---TC-TCTTGGAAAAGCTCCTCTCAGCAAAAGC
* *
7220263 TCAACAACTTTAAAATCTCTTAAAAAAGCTCCTCTCAACAGAGGCTCAATAACTTTAAAAATCTC
1 TCAACAACTTTAAAATCTCTTAAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTC
*
7220328 ATCTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTCA
66 ATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTCA
* * * *
7220393 GCAGAGGCTCAACAACTTTAAAAATCTCATCTGGAAAAGCTTCTCTCAGCAGAGGCTTAACAACT
131 GCAGAGGCTCAACAACTTTAAAAATCTC-TCTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACT
* *
7220458 TTAAAATTCTCATCTTGGAAAAGCTCCTCTCAGCAGAGGC
195 TTAAAA---TC-TCTTGGAAAAGCTCCTCTCAGCAAAAGC
* * * *
7220498 TCAACAATTTTAAAATCTCTTGAAAAAGTTCCTCTCAACAGAGGCTCAACAACTTTAAAAATCTC
1 TCAACAACTTTAAAATCTCTTAAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTC
* * **
7220563 ATCT-AGAAATGCTCCTCTCAACAGAACCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTC
66 ATCTGA-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTC
* *
7220627 AACAGAGGCTCAACAATTTTAAAA
130 AGCAGAGGCTCAACAACTTTAAAA
7220651 TATCATCTGT
Statistics
Matches: 761, Mismatches: 71, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
228 33 0.04
229 53 0.07
230 28 0.04
231 120 0.16
232 75 0.10
233 57 0.07
234 43 0.06
235 341 0.45
236 11 0.01
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (230 bp):
TCAACAACTTTAAAATCTCTTAAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTC
ATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTGAAAAAGCTCCTCTCA
GCAGAGGCTCAACAACTTTAAAAATCTCTCTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTT
TAAAATCTCTTGGAAAAGCTCCTCTCAGCAAAAGC
Found at i:7230888 original size:193 final size:194
Alignment explanation
Indices: 7230549--7230937 Score: 642
Period size: 193 Copynumber: 2.0 Consensus size: 194
7230539 TTTTTACTTA
7230549 TTAAAAAAAATATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTT
1 TTAAAAAAAATATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTT
* *
7230614 TCAGTACGTTGGTAACATTAAAAGAACTATTTCTCACCTAAAGATTTCTTAAAGCATCTCTACTC
66 CCAGTACATTGGTAACATTAAAAGAACTATTTCTCACCTAAAGATTTCTTAAAGCATCTCTACTC
* * *
7230679 AGAATACTTTTAGAATCTCATCTTTG-GAGG-CTCGAATTTATTTTTCGTAAGAAA-ATGTCATG
131 AGAATACTTTTAGAATCTCATCTTTGAGAGGTCT-AAACTTATTTTTCGTAAAAAATATGTCATG
* *
7230741 TTAAAAAAATTTATTCTCGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATGT
1 TTAAAAAAA-ATATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGT
*
7230806 TCCAGTACATTGGTAACATTAAAAGAACTATTTCTCACCTAGAGATTTCTTAAAGCATCTCTACT
65 TCCAGTACATTGGTAACATTAAAAGAACTATTTCTCACCTAAAGATTTCTTAAAGCATCTCTACT
7230871 C-GAAATACTTTTAGAATCTCATCTTTGAGAGGTCTAAACTTATTTTTCGTAAAAAATTATGTCA
130 CAG-AATACTTTTAGAATCTCATCTTTGAGAGGTCTAAACTTATTTTTCGTAAAAAA-TATGTCA
7230935 TG
193 TG
7230937 T
1 T
7230938 ACACAATGCA
Statistics
Matches: 183, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
192 10 0.05
193 140 0.77
194 22 0.12
195 2 0.01
196 9 0.05
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (194 bp):
TTAAAAAAAATATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTT
CCAGTACATTGGTAACATTAAAAGAACTATTTCTCACCTAAAGATTTCTTAAAGCATCTCTACTC
AGAATACTTTTAGAATCTCATCTTTGAGAGGTCTAAACTTATTTTTCGTAAAAAATATGTCATG
Found at i:7231017 original size:11 final size:11
Alignment explanation
Indices: 7230986--7231021 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7230976 TTTTCAAAAA
7230986 TTTTATTAATT
1 TTTTATTAATT
7230997 GTTTTATTAATT
1 -TTTTATTAATT
*
7231009 TTTTTTTAATT
1 TTTTATTAATT
7231020 TT
1 TT
7231022 AATTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (11 bp):
TTTTATTAATT
Found at i:7231033 original size:21 final size:23
Alignment explanation
Indices: 7230982--7231033 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
7230972 TTCTTTTTCA
*
7230982 AAAATTTTATTAATTGTTTTATT
1 AAAATTTTATTAATTGTTTAATT
** *
7231005 AATTTTTTTTTAA-T-TTTAATT
1 AAAATTTTATTAATTGTTTAATT
7231026 AAAATTTT
1 AAAATTTT
7231034 GAAGAAAAAG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 12 0.52
22 1 0.04
23 10 0.43
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
AAAATTTTATTAATTGTTTAATT
Found at i:7232629 original size:13 final size:13
Alignment explanation
Indices: 7232613--7232649 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
7232603 ACGCAGAAAC
7232613 GAGAAAAAAAAAA
1 GAGAAAAAAAAAA
7232626 GAGAAAAAAAAAA
1 GAGAAAAAAAAAA
7232639 -AGAAAAAAAAA
1 GAGAAAAAAAAA
7232650 GAAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
GAGAAAAAAAAAA
Found at i:7232634 original size:10 final size:10
Alignment explanation
Indices: 7232631--7232656 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7232621 AAAAAGAGAA
7232631 AAAAAAAAAG
1 AAAAAAAAAG
7232641 AAAAAAAAAG
1 AAAAAAAAAG
7232651 AAAAAA
1 AAAAAA
7232657 TAATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:7232634 original size:12 final size:12
Alignment explanation
Indices: 7232617--7232656 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
7232607 AGAAACGAGA
7232617 AAAAAAAAAGAG
1 AAAAAAAAAGAG
*
7232629 AAAAAAAAAAAG
1 AAAAAAAAAGAG
7232641 AAAAAAAAAGA-
1 AAAAAAAAAGAG
7232652 AAAAA
1 AAAAA
7232657 TAATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 5 0.19
12 21 0.81
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:7232635 original size:14 final size:13
Alignment explanation
Indices: 7232616--7232649 Score: 59
Period size: 14 Copynumber: 2.5 Consensus size: 13
7232606 CAGAAACGAG
7232616 AAAAAAAAAAGAGA
1 AAAAAAAAAAGA-A
7232630 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
7232643 AAAAAAA
1 AAAAAAA
7232650 GAAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:7232898 original size:13 final size:13
Alignment explanation
Indices: 7232880--7232904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7232870 TGGACTTAGC
7232880 AAGCACACATACA
1 AAGCACACATACA
7232893 AAGCACACATAC
1 AAGCACACATAC
7232905 GAGGAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (13 bp):
AAGCACACATACA
Found at i:7235820 original size:14 final size:14
Alignment explanation
Indices: 7235780--7235845 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
7235770 ATTTTTTAAA
*
7235780 TTAAAATAAAATATT
1 TTAAAAT-AAATAAT
* * *
7235795 TTATATTTAATAAT
1 TTAAAATAAATAAT
7235809 TTAAAATAAATAAT
1 TTAAAATAAATAAT
* *
7235823 TATAAATTATAT-AT
1 T-TAAAATAAATAAT
7235837 TTAAAATAA
1 TTAAAATAA
7235846 TTTTAATAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
13 6 0.15
14 20 0.51
15 13 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAAATAAATAAT
Found at i:7235859 original size:37 final size:36
Alignment explanation
Indices: 7235796--7235866 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 36
7235786 TAAAATATTT
*
7235796 TATATTTAATAATTTAAAATAAATAATTATAAATTA
1 TATATTTAATAATTTAAAATAAATAATCATAAATTA
*
7235832 TATATTTAAAATAATTT-TAATAAATAATCATAAAT
1 TATATTT--AATAATTTAAAATAAATAATCATAAAT
7235867 AAAATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 7 0.23
37 16 0.52
38 8 0.26
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (36 bp):
TATATTTAATAATTTAAAATAAATAATCATAAATTA
Found at i:7236175 original size:24 final size:22
Alignment explanation
Indices: 7236127--7236175 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
7236117 GATAATTTTT
**
7236127 TTATAAAATTTTTTAATCATTA
1 TTATAAAATTTTTTAATCACAA
7236149 TTATAATAATTTTTTAAATCACAA
1 TTATAA-AATTTTTT-AATCACAA
7236173 TTA
1 TTA
7236176 CAGTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 6 0.26
23 8 0.35
24 9 0.39
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATAAAATTTTTTAATCACAA
Found at i:7241248 original size:14 final size:15
Alignment explanation
Indices: 7241229--7241261 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7241219 ACATAATATT
*
7241229 AAAATTAA-CATTTA
1 AAAATTAAGAATTTA
7241243 AAAATTAAGAATTTA
1 AAAATTAAGAATTTA
7241258 AAAA
1 AAAA
7241262 GTTTATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (15 bp):
AAAATTAAGAATTTA
Found at i:7242460 original size:30 final size:30
Alignment explanation
Indices: 7242426--7242511 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
7242416 TTGATTCATG
*
7242426 TTAAGGGCTTATTTAGG-TATAAATTAAAAA
1 TTAAGAGCTTATTT-GGATATAAATTAAAAA
* *
7242456 TTAAGTGCTTATTTGGATATAAATTAAAAT
1 TTAAGAGCTTATTTGGATATAAATTAAAAA
*
7242486 TTAAGAGTTTATTT-GAT-TAAA-TAAAA
1 TTAAGAGCTTATTTGGATATAAATTAAAA
7242512 GTATAAGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 5 0.10
28 4 0.08
29 5 0.10
30 37 0.73
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (30 bp):
TTAAGAGCTTATTTGGATATAAATTAAAAA
Found at i:7242518 original size:28 final size:30
Alignment explanation
Indices: 7242434--7242527 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
7242424 TGTTAAGGGC
***
7242434 TTATTTAGG-TATAAATTAAAA-ATTAAGTGC
1 TTATTT-GGATATAAATTAAAATA-TAAGAAT
* *
7242464 TTATTTGGATATAAATTAAAATTTAAGAGT
1 TTATTTGGATATAAATTAAAATATAAGAAT
7242494 TTATTT-GAT-TAAA-TAAAAGTATAAGAAT
1 TTATTTGGATATAAATTAAAA-TATAAGAAT
7242522 TTATTT
1 TTATTT
7242528 AAATAAAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
27 5 0.09
28 17 0.30
29 5 0.09
30 29 0.52
ACGTcount: A:0.44, C:0.01, G:0.12, T:0.44
Consensus pattern (30 bp):
TTATTTGGATATAAATTAAAATATAAGAAT
Found at i:7242534 original size:28 final size:28
Alignment explanation
Indices: 7242474--7242534 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
7242464 TTATTTGGAT
* * *
7242474 ATAAATTAAAATTTAAGAGTTTATTTGA
1 ATAAATTAAAATATAAGAATTTATTTAA
*
7242502 TTAAA-TAAAAGTATAAGAATTTATTTAA
1 ATAAATTAAAA-TATAAGAATTTATTTAA
7242530 ATAAA
1 ATAAA
7242535 ATGATAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.39
Consensus pattern (28 bp):
ATAAATTAAAATATAAGAATTTATTTAA
Found at i:7268967 original size:2 final size:2
Alignment explanation
Indices: 7268960--7269021 Score: 63
Period size: 2 Copynumber: 31.5 Consensus size: 2
7268950 TTGTTTCTGT
* * * * *
7268960 TA TA TA TA TA TA AA TA TA TA TA TA TT TT TT TG T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7269001 TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
7269022 TTTAGCAAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (2 bp):
TA
Found at i:7270360 original size:16 final size:16
Alignment explanation
Indices: 7270345--7270420 Score: 65
Period size: 16 Copynumber: 5.1 Consensus size: 16
7270335 TTGAATTTTA
7270345 AAATTT-AATTAATTT
1 AAATTTAAATTAATTT
7270360 AAATTTAAATTAATTT
1 AAATTTAAATTAATTT
* *
7270376 ---TTTAAGTT-GTTT
1 AAATTTAAATTAATTT
* *
7270388 AAATTAAAATTATTTT
1 AAATTTAAATTAATTT
*
7270404 AAATTTTAATT-ATTT
1 AAATTTAAATTAATTT
7270419 AA
1 AA
7270421 TAGATCATGT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
12 3 0.06
13 7 0.15
15 17 0.35
16 21 0.44
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (16 bp):
AAATTTAAATTAATTT
Found at i:7270366 original size:22 final size:22
Alignment explanation
Indices: 7270324--7270368 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7270314 CATTACTTCG
*
7270324 AATTTAAATTATTGAATTTTAA
1 AATTTAAATTATTGAAATTTAA
*
7270346 AATTT-AATTAATTTAAATTTAA
1 AATTTAAATT-ATTGAAATTTAA
7270368 A
1 A
7270369 TTAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTTAAATTATTGAAATTTAA
Found at i:7271147 original size:22 final size:22
Alignment explanation
Indices: 7271122--7271164 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7271112 TCATAAAATA
* * *
7271122 TTAAATTTTTAATTTTAATAAT
1 TTAAAATTTAAATATTAATAAT
7271144 TTAAAATTTAAATATTAATAA
1 TTAAAATTTAAATATTAATAA
7271165 CTTCAAGGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAAATTTAAATATTAATAAT
Found at i:7272200 original size:14 final size:15
Alignment explanation
Indices: 7272176--7272204 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7272166 TTACATATAC
7272176 ATGTGTTTTTAATAT
1 ATGTGTTTTTAATAT
7272191 ATGT-TTTTTAATAT
1 ATGTGTTTTTAATAT
7272205 GACACCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (15 bp):
ATGTGTTTTTAATAT
Found at i:7273080 original size:20 final size:21
Alignment explanation
Indices: 7273043--7273084 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7273033 AATAAAAAAT
7273043 AATATAATAAATATTAGAATA
1 AATATAATAAATATTAGAATA
7273064 AATATAATAAATA-TAGAATA
1 AATATAATAAATATTAGAATA
7273084 A
1 A
7273085 CAATATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (21 bp):
AATATAATAAATATTAGAATA
Found at i:7273297 original size:2 final size:2
Alignment explanation
Indices: 7273290--7273340 Score: 57
Period size: 2 Copynumber: 25.5 Consensus size: 2
7273280 GTAAACAACT
* * * * *
7273290 TC TC TC TC TT TT TT TC TC TA TC TC TC TT TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7273332 TC TC TC TC T
1 TC TC TC TC T
7273341 ATATATATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (2 bp):
TC
Found at i:7273308 original size:14 final size:14
Alignment explanation
Indices: 7273289--7273340 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
7273279 AGTAAACAAC
* *
7273289 TTCTCTCTCTTTTT
1 TTCTCTCTCTCTCT
*
7273303 TTCTCTATCTCTCT
1 TTCTCTCTCTCTCT
7273317 TTCTCTCTCTCTCT
1 TTCTCTCTCTCTCT
*
7273331 CTCTCTCTCT
1 TTCTCTCTCT
7273341 ATATATATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (14 bp):
TTCTCTCTCTCTCT
Found at i:7275780 original size:18 final size:17
Alignment explanation
Indices: 7275761--7275904 Score: 77
Period size: 18 Copynumber: 8.1 Consensus size: 17
7275751 TTAATAAATA
7275761 AATAATATTATATTAAT
1 AATAATATTATATTAAT
*
7275778 AAATAATATAATATTAATT
1 -AATAATATTATATTAA-T
7275797 AATTAATATTATA--AA-
1 AA-TAATATTATATTAAT
*
7275812 AAT-ATATTA-ATAAAT
1 AATAATATTATATTAAT
*
7275827 AAT-ATATTATCAATAAAT
1 AATAATATTAT--ATTAAT
*
7275845 AATAACACTATTAATATAAAT
1 AAT-A-A-TATT-ATATTAAT
*
7275866 ATATTAATAATATTATTAAT
1 A-A-TAATATTA-TATTAAT
7275886 AATAATATTA-ATATAAT
1 AATAATATTATAT-TAAT
7275903 AA
1 AA
7275905 CAAATAATAT
Statistics
Matches: 104, Mismatches: 5, Indels: 35
0.72 0.03 0.24
Matches are distributed among these distances:
12 1 0.01
13 6 0.06
14 3 0.03
15 11 0.11
16 2 0.02
17 8 0.08
18 33 0.32
19 12 0.12
20 10 0.10
21 9 0.09
22 6 0.06
23 3 0.03
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAATATTATATTAAT
Found at i:7275787 original size:15 final size:15
Alignment explanation
Indices: 7275764--7275915 Score: 87
Period size: 15 Copynumber: 9.6 Consensus size: 15
7275754 ATAAATAAAT
*
7275764 AATATTATATTAATA
1 AATAATATATTAATA
* *
7275779 AATAATATAATATTA
1 AATAATATATTAATA
*
7275794 ATTAATTAATATT-ATA
1 AATAA-T-ATATTAATA
7275810 AA-AATATATTAATA
1 AATAATATATTAATA
7275824 AATAATATATTATCAATA
1 AATAATATA-T-T-AATA
7275842 AATAATAACACTATTAATA
1 AATAAT---A-TATTAATA
*
7275861 TA-AATATATTAAT-
1 AATAATATATTAATA
* *
7275874 AATATTATTAATAATA
1 AATAATA-TATTAATA
* *
7275890 ATATTAATATAATAACA
1 A-A-TAATATATTAATA
7275907 AATAATATA
1 AATAATATA
7275916 AAAGAATAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
13 6 0.06
14 16 0.15
15 38 0.35
16 7 0.06
17 14 0.13
18 17 0.16
19 5 0.05
20 1 0.01
21 2 0.02
22 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (15 bp):
AATAATATATTAATA
Found at i:7275824 original size:45 final size:44
Alignment explanation
Indices: 7275769--7275910 Score: 135
Period size: 45 Copynumber: 3.0 Consensus size: 44
7275759 TAAATAATAT
*
7275769 TATATTAATAAATAATATAATATTAATTAATTAATATTATAAAAA
1 TATATTAATAAATAATATAATAATAA-TAATTAATATTATAAAAA
* *
7275814 TATATTAATAAATAATATATTATCAATAAATAATAACACTATTAATATAAA
1 TATATTAATAAATAATATA--AT-AAT-AATAATTA-A-TATT-ATAAAAA
* *
7275865 TATATTAAT-AATATTATTAATAATAAT-ATTAATATAATAACAAA
1 TATATTAATAAATAATA-TAATAATAATAATTAATATTATAA-AAA
7275909 TA
1 TA
7275911 ATATAAAAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 19
0.76 0.07 0.18
Matches are distributed among these distances:
43 3 0.04
44 8 0.10
45 20 0.25
46 3 0.04
47 5 0.06
48 10 0.12
49 5 0.06
50 10 0.12
51 17 0.21
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (44 bp):
TATATTAATAAATAATATAATAATAATAATTAATATTATAAAAA
Found at i:7275929 original size:20 final size:21
Alignment explanation
Indices: 7275882--7275930 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7275872 ATAATATTAT
* *
7275882 TAAT-AATAATATTAATATAA
1 TAATAAATAATATTAAAAGAA
*
7275902 TAACAAATAATA-TAAAAGAA
1 TAATAAATAATATTAAAAGAA
7275922 TAATAAATA
1 TAATAAATA
7275931 TTTTTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
TAATAAATAATATTAAAAGAA
Found at i:7276022 original size:15 final size:15
Alignment explanation
Indices: 7276002--7276042 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
7275992 TATAATTATT
*
7276002 TTTTAATATTAATAA
1 TTTTAATATAAATAA
7276017 TTTTAATAATAAATAA
1 TTTTAAT-ATAAATAA
*
7276033 TTTCAATATA
1 TTTTAATATA
7276043 CTTTAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTTAATATAAATAA
Found at i:7276040 original size:25 final size:26
Alignment explanation
Indices: 7276012--7276077 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
7276002 TTTTAATATT
7276012 AATAATTTTAATAATAAATAA-TTTC
1 AATAATTTTAATAATAAATAATTTTC
* *
7276037 AATATACTTTAATAATAAATAATTTTT
1 AATA-ATTTTAATAATAAATAATTTTC
7276064 AAT-ATTTTAATAAT
1 AATAATTTTAATAAT
7276078 CATATTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 14 0.39
26 16 0.44
27 6 0.17
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (26 bp):
AATAATTTTAATAATAAATAATTTTC
Found at i:7276207 original size:27 final size:26
Alignment explanation
Indices: 7276152--7276204 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7276142 TCATTAACTT
* *
7276152 ATTCAAATAATAAAAAATTTATTTTA
1 ATTCAAAAAATAAAAAATTTATTTAA
*
7276178 ATTCAAAAAATATAAATATTT-TTTAA
1 ATTCAAAAAATA-AAAAATTTATTTAA
7276204 A
1 A
7276205 ATTATTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTCAAAAAATAAAAAATTTATTTAA
Found at i:7276376 original size:2 final size:2
Alignment explanation
Indices: 7276369--7276404 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7276359 AAATATTACC
7276369 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7276405 ATATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7276409 original size:2 final size:2
Alignment explanation
Indices: 7276404--7276433 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7276394 TCTCTCTCTC
7276404 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7276434 CATGCTTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7277437 original size:10 final size:11
Alignment explanation
Indices: 7277424--7277456 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7277414 TATTCGTGAA
7277424 TAAAA-TTATT
1 TAAAACTTATT
*
7277434 TAAAATTTATT
1 TAAAACTTATT
7277445 TAAAACTTATT
1 TAAAACTTATT
7277456 T
1 T
7277457 GTTTATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (11 bp):
TAAAACTTATT
Found at i:7277573 original size:20 final size:20
Alignment explanation
Indices: 7277533--7277573 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7277523 TCTTGTTTTA
*
7277533 AGATTCGTCTATGTTTATTT
1 AGATTCGTCTATATTTATTT
* *
7277553 AGATTCGTTTATATTTGTTT
1 AGATTCGTCTATATTTATTT
7277573 A
1 A
7277574 AAATTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (20 bp):
AGATTCGTCTATATTTATTT
Found at i:7277593 original size:14 final size:15
Alignment explanation
Indices: 7277564--7277597 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
7277554 GATTCGTTTA
7277564 TATTTGTTTAAAATT
1 TATTTGTTTAAAATT
7277579 TATTTGTTT-AAATT
1 TATTTGTTTAAAATT
7277593 TATTT
1 TATTT
7277598 TGTTATGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TATTTGTTTAAAATT
Found at i:7277599 original size:15 final size:16
Alignment explanation
Indices: 7277560--7277601 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
7277550 TTTAGATTCG
7277560 TTTATATTTGTTTAAAA
1 TTTAT-TTTGTTTAAAA
7277577 TTTA-TTTGTTT-AAA
1 TTTATTTTGTTTAAAA
7277591 TTTATTTTGTT
1 TTTATTTTGTT
7277602 ATGATTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.29
15 13 0.54
17 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTATTTTGTTTAAAA
Found at i:7277901 original size:21 final size:22
Alignment explanation
Indices: 7277863--7277922 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
7277853 TATCTTAATC
7277863 TTATTTTAAGATTAGTTTATAT
1 TTATTTTAAGATTAGTTTATAT
* *
7277885 TTATTTT-GGATTCGTTTATAT
1 TTATTTTAAGATTAGTTTATAT
*
7277906 TTA-TTTAAGATTTGTTT
1 TTATTTTAAGATTAGTTT
7277923 GTTTAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 3 0.09
21 23 0.70
22 7 0.21
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.62
Consensus pattern (22 bp):
TTATTTTAAGATTAGTTTATAT
Found at i:7277948 original size:25 final size:25
Alignment explanation
Indices: 7277893--7277949 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
7277883 ATTTATTTTG
* *
7277893 GATTCGTTTATATTTATTTAAGATTT
1 GATTTGTTTAAATTTATTT-AGATTT
7277919 G-TTTGTTTAAATTTATTT-GATTAT
1 GATTTGTTTAAATTTATTTAGATT-T
7277943 GATTTGT
1 GATTTGT
7277950 ATATTATTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 2 0.07
25 20 0.74
26 1 0.04
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.60
Consensus pattern (25 bp):
GATTTGTTTAAATTTATTTAGATTT
Found at i:7278607 original size:29 final size:29
Alignment explanation
Indices: 7278546--7278622 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
7278536 TTTCATTATA
* *
7278546 ATAAAATATTTAATATAATA-CTTAAATT
1 ATAAAATTTTTAATATAATATCTTAAAGT
*
7278574 TTAAAAGTTTTTAATATAATATC-TAAAGT
1 ATAAAA-TTTTTAATATAATATCTTAAAGT
7278603 AT-AAATTTGTTAATA-AATAT
1 ATAAAATTT-TTAATATAATAT
7278623 AATAATTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 8 0.19
28 14 0.33
29 19 0.45
30 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (29 bp):
ATAAAATTTTTAATATAATATCTTAAAGT
Found at i:7286094 original size:17 final size:16
Alignment explanation
Indices: 7286070--7286113 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
7286060 ATTTTATTAT
*
7286070 TTATTTAATATATATA
1 TTATTTAATATAAATA
*
7286086 TTATATTAATAAAAATA
1 TTAT-TTAATATAAATA
7286103 TTATTTAATAT
1 TTATTTAATAT
7286114 TTTAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATTTAATATAAATA
Found at i:7287253 original size:21 final size:19
Alignment explanation
Indices: 7287201--7287246 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
7287191 CGAAAGACGT
* *
7287201 ATATATAAATAAT-AAAAA
1 ATATATAAAGATTAAAAAA
*
7287219 ATATATGAAGATTAAAAAA
1 ATATATAAAGATTAAAAAA
7287238 ATATATAAA
1 ATATATAAA
7287247 AGGATTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
ATATATAAAGATTAAAAAA
Found at i:7287279 original size:18 final size:17
Alignment explanation
Indices: 7287238--7287283 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7287228 GATTAAAAAA
*
7287238 ATATATAAAAGGATTAT
1 ATATATAAAAAGATTAT
* *
7287255 TTTTATAAAAAGATTAAT
1 ATATATAAAAAGATT-AT
7287273 ATATATAAAAA
1 ATATATAAAAA
7287284 TATAAAAAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (17 bp):
ATATATAAAAAGATTAT
Found at i:7287301 original size:14 final size:14
Alignment explanation
Indices: 7287258--7287303 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7287248 GGATTATTTT
7287258 TATAAAAAGATTAA
1 TATAAAAAGATTAA
*
7287272 TATATATAA-A--AA
1 TATA-AAAAGATTAA
7287284 TATAAAAAGATTAA
1 TATAAAAAGATTAA
7287298 TATAAA
1 TATAAA
7287304 TAAGTGGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 3 0.12
12 7 0.27
14 13 0.50
15 3 0.12
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
TATAAAAAGATTAA
Found at i:7287639 original size:29 final size:29
Alignment explanation
Indices: 7287607--7287670 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
7287597 AGCTTCAAAT
* *
7287607 TTGAA-ACCTCCAAATTATAAGCTGTTGG
1 TTGAAGACCTCCAAATTAGAAGCTGCTGG
**
7287635 ATTGAAGTTCTCCAAATTAGAAGCTGCTGG
1 -TTGAAGACCTCCAAATTAGAAGCTGCTGG
7287665 TTGAAG
1 TTGAAG
7287671 TATCACATCG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (29 bp):
TTGAAGACCTCCAAATTAGAAGCTGCTGG
Found at i:7287650 original size:30 final size:29
Alignment explanation
Indices: 7287614--7287671 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
7287604 AATTTGAAAC
* *
7287614 CTCCAAATTATAAGCTGTTGGATTGAAGTT
1 CTCCAAATTAGAAGCTGCTGG-TTGAAGTT
7287644 CTCCAAATTAGAAGCTGCTGGTTGAAGT
1 CTCCAAATTAGAAGCTGCTGGTTGAAGT
7287672 ATCACATCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (29 bp):
CTCCAAATTAGAAGCTGCTGGTTGAAGTT
Found at i:7293369 original size:633 final size:634
Alignment explanation
Indices: 7291609--7293508 Score: 3642
Period size: 634 Copynumber: 3.0 Consensus size: 634
7291599 CAAGTTTTCT
*
7291609 TTTTTGGTTTTTTTGTGGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
1 TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
* *
7291674 AATGCTGTCAAACAA-TTGCCATTAGCAAACTTTCAAATTTAGAAATGGAGAATGTTGGGGTAGC
66 AATGCTGTTAAACAATTTG-CATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAG-
7291738 CAAGGTATAAGTCGTTTTTTTTTTTTTTTTTTTTTGGATTCGATTCGATTCTTTTGGCATTCTAA
129 CAA-GTATAAGTCG----TTTTTTTTTTTTTTTTT-GATTCGATTCGATTC-TTTGGCATTCTAA
7291803 CATTGAGTCCCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATT
187 CATTGAGTCCCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATT
7291868 TTGTATTGGACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAA
252 TTGTATTGGACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAA
7291933 CATAGCTATGAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTG
317 CATAGCTATGAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTG
7291998 TTTTCTTCGCAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATG
382 TTTTCTTCGCAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATG
7292063 CATAAATAAGTAATTAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGT
447 CATAAATAAGTAATTAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGT
7292128 GACTACAGTTTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATAT
512 GACTACAGTTTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATAT
7292193 GAATTTTTTAGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATGCTAATTTTG
577 GAATTTTTTAGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATGCTAATTTTG
7292251 TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
1 TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
7292316 AATGCTGTTAAACAATTTGCATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAGCA
66 AATGCTGTTAAACAATTTGCATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAGCA
7292381 AGTATAAGTCGTTTTTTTTTTTTTTTTTGATTCGATTCGATTCTTTGGCATTCTAACATTGAGTC
131 AGTATAAGTCGTTTTTTTTTTTTTTTTTGATTCGATTCGATTCTTTGGCATTCTAACATTGAGTC
7292446 CCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATTTTGTATTGG
196 CCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATTTTGTATTGG
*
7292511 ACTTACTATAGCATGCTTTTTCTATCTGCAGTTTGTTAATACTGCAAATGACTAAACATAGCTAT
261 ACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAACATAGCTAT
7292576 GAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTGTTTTCTTCG
326 GAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTGTTTTCTTCG
7292641 CAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATGCATAAATAA
391 CAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATGCATAAATAA
*
7292706 GTAATTAGCAGTTGTCTACCATGAGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGTGACTACAGT
456 GTAATTAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGTGACTACAGT
7292771 TTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATATGAATTTTTT
521 TTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATATGAATTTTTT
7292836 AGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATGCTAATTTTG
586 AGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATGCTAATTTTG
7292885 TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
1 TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
7292950 AATGCTGTTAAACAATTTGCATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAGCA
66 AATGCTGTTAAACAATTTGCATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAGCA
7293015 AGTATAAGTCG-TTTTTTTTTTTTTTTTGATTCGATTCGATTCTTTGGCATTCTAACATTGAGTC
131 AGTATAAGTCGTTTTTTTTTTTTTTTTTGATTCGATTCGATTCTTTGGCATTCTAACATTGAGTC
*
7293079 CCTCTGCATTTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATTTTGTATTGG
196 CCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATTTTGTATTGG
7293144 ACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAACATAGCTAT
261 ACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAACATAGCTAT
7293209 GAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTGTTTTCTTCG
326 GAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTGTTTTCTTCG
7293274 CAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATGCATAAATAA
391 CAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATGCATAAATAA
*
7293339 GTAATAAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGTGACTACAGT
456 GTAATTAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGTGACTACAGT
7293404 TTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATATGAATTTTTT
521 TTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATATGAATTTTTT
7293469 AGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATG
586 AGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATG
7293509 TATCTTATTT
Statistics
Matches: 1248, Mismatches: 9, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
633 479 0.38
634 600 0.48
635 15 0.01
636 17 0.01
640 10 0.01
641 3 0.00
642 121 0.10
643 3 0.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.43
Consensus pattern (634 bp):
TTTTTGGTTTTTTTGTAGAGATTACGTTATAATGCTAATTTTGTCTTCAATTTGTGGTTAAAAAA
AATGCTGTTAAACAATTTGCATTAGCAAACTTTCAAATTTATAAATGGAGAATGTTGGGGTAGCA
AGTATAAGTCGTTTTTTTTTTTTTTTTTGATTCGATTCGATTCTTTGGCATTCTAACATTGAGTC
CCTCTGCAATTGCTTCCATTGCGAATTGATGAGAAACCTCAGATTTTTGTTTGATTTTGTATTGG
ACTTACTATAGCATGCTTTTTCTATCTTCAGTTTGTTAATACTGCAAATGACTAAACATAGCTAT
GAGATCTGAGGGCTTTGTTGATCATTTTGAATCCCAGACTTTATCATGCTATTTTGTTTTCTTCG
CAAATGATTTGCATCTTGATTAGTTGATTATACTCGTGCCTACATTTCACTGAATGCATAAATAA
GTAATTAGCAGTTGTCTACCATGGGAATTTTTTGGCTGTTGGTTTTGTTCTTTAGTGACTACAGT
TTGGAAATGTGATGCTACTGATTGGTAGTACGTTTTCTCATTGGGATGGTTTATATGAATTTTTT
AGCTTCGTTAGTCTATGAATTTTGTCAATCCCGCTGAATGCTAATTTTG
Found at i:7294428 original size:4 final size:4
Alignment explanation
Indices: 7294419--7294443 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7294409 TACATATGTA
7294419 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
7294444 TTGGTGGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7296047 original size:8 final size:8
Alignment explanation
Indices: 7296034--7296061 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7296024 AAATTATTTA
7296034 TAAAATAT
1 TAAAATAT
7296042 TAAAATAT
1 TAAAATAT
7296050 TAAAATAT
1 TAAAATAT
7296058 TAAA
1 TAAA
7296062 TTAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAAAATAT
Found at i:7296120 original size:14 final size:14
Alignment explanation
Indices: 7296098--7296129 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7296088 CAAATGATTT
7296098 ATTTCATTTTTTAA
1 ATTTCATTTTTTAA
*
7296112 ATTTTATTTTTTAA
1 ATTTCATTTTTTAA
7296126 ATTT
1 ATTT
7296130 ATTATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTCATTTTTTAA
Found at i:7299189 original size:2 final size:2
Alignment explanation
Indices: 7299182--7299206 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7299172 CCACATTCAT
7299182 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7299207 ATGTGCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7299249 original size:2 final size:2
Alignment explanation
Indices: 7299244--7299278 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7299234 TGAATGCATA
7299244 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7299279 ATGTATTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:7300731 original size:16 final size:16
Alignment explanation
Indices: 7300710--7300743 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7300700 ATATATATAT
*
7300710 GTGTGTGTGTGTGTGG
1 GTGTGTGTGTGGGTGG
*
7300726 GTGTGTTTGTGGGTGG
1 GTGTGTGTGTGGGTGG
7300742 GT
1 GT
7300744 ATATTCCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44
Consensus pattern (16 bp):
GTGTGTGTGTGGGTGG
Found at i:7300902 original size:13 final size:13
Alignment explanation
Indices: 7300870--7300908 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
7300860 TCTGAGGGCA
7300870 TCTTTCTTTCTTTC
1 TCTTTCTTT-TTTC
*
7300884 TTTTTCTTTTTTC
1 TCTTTCTTTTTTC
7300897 TCTTTCTTTTTT
1 TCTTTCTTTTTT
7300909 TTTTGCTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TCTTTCTTTTTTC
Found at i:7307591 original size:20 final size:20
Alignment explanation
Indices: 7307568--7307606 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7307558 TAGATATTAT
7307568 AAATAATGTTA-TAATATATA
1 AAATAAT-TTATTAATATATA
7307588 AAATAATTTATTAATATAT
1 AAATAATTTATTAATATAT
7307607 TTTTAGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
AAATAATTTATTAATATATA
Found at i:7320034 original size:18 final size:18
Alignment explanation
Indices: 7320011--7320048 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7320001 ATCAATGTAA
7320011 TGAAATCTAAGGGGGTTT
1 TGAAATCTAAGGGGGTTT
*
7320029 TGAAATGTAAGGGGGTTT
1 TGAAATCTAAGGGGGTTT
7320047 TG
1 TG
7320049 GCTCTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.37, T:0.34
Consensus pattern (18 bp):
TGAAATCTAAGGGGGTTT
Found at i:7323080 original size:24 final size:25
Alignment explanation
Indices: 7323044--7323092 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
7323034 TTTTATTTTC
*
7323044 AAATTATAATTTTTTTATAAAAATT
1 AAATTATAATTTTTATATAAAAATT
* *
7323069 AAATT-TATTTTTTATATTAAAATT
1 AAATTATAATTTTTATATAAAAATT
7323093 TTCATAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
AAATTATAATTTTTATATAAAAATT
Found at i:7325945 original size:17 final size:18
Alignment explanation
Indices: 7325898--7325946 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
7325888 CTCTAGCATC
*
7325898 ATGAAGAACGAGAAGAGAAG
1 ATGAAGAAGGAG-A-AGAAG
7325918 ATGAAGAAGGAGAAGAA-
1 ATGAAGAAGGAGAAGAAG
*
7325935 ATGAAGGAGGAG
1 ATGAAGAAGGAG
7325947 GATTTAAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 11 0.41
18 4 0.15
19 1 0.04
20 11 0.41
ACGTcount: A:0.53, C:0.02, G:0.39, T:0.06
Consensus pattern (18 bp):
ATGAAGAAGGAGAAGAAG
Found at i:7327215 original size:2 final size:2
Alignment explanation
Indices: 7327208--7327235 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7327198 AGGACATTAA
7327208 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7327236 GTGCAAGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7328156 original size:13 final size:12
Alignment explanation
Indices: 7328136--7328170 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7328126 TATGATATAT
7328136 TTTATATAAAAA
1 TTTATATAAAAA
*
7328148 TTATATATAATAA
1 TT-TATATAAAAA
7328161 TTTATATAAA
1 TTTATATAAA
7328171 CATAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTATATAAAAA
Found at i:7328272 original size:29 final size:29
Alignment explanation
Indices: 7328190--7328275 Score: 84
Period size: 29 Copynumber: 2.8 Consensus size: 29
7328180 ATAAAATATA
* *
7328190 ATTTTTTAATTTTATTAAATTTATTTATT
1 ATTTTTTTATTTTATTAATTTTATTTATT
**
7328219 ATTTTTTTAAAATTTTAAAATATTTTATTT-TT
1 ATTTTTTT---ATTTTATTA-ATTTTATTTATT
7328251 ATTTTTTTATTTGTATTAATTTTAT
1 ATTTTTTTATTT-TATTAATTTTAT
7328276 ATCGTATTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
29 18 0.39
30 3 0.07
32 17 0.37
33 8 0.17
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (29 bp):
ATTTTTTTATTTTATTAATTTTATTTATT
Found at i:7337777 original size:24 final size:24
Alignment explanation
Indices: 7337732--7337779 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7337722 TTGTTTGATT
*
7337732 TTAATTTATTTTAAATTTAAATTA
1 TTAATTTATTTTAAATTCAAATTA
*
7337756 TTAATTTTTTATTAAA-TCAAATTA
1 TTAATTTATT-TTAAATTCAAATTA
7337780 AAACGAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TTAATTTATTTTAAATTCAAATTA
Found at i:7339048 original size:26 final size:26
Alignment explanation
Indices: 7339012--7339063 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7339002 CAAAAGAAGA
7339012 TAAATTTAATGGTGTCCTCCCTTTAT
1 TAAATTTAATGGTGTCCTCCCTTTAT
7339038 TAAATTTAATGGTGTCCTCCCTTTAT
1 TAAATTTAATGGTGTCCTCCCTTTAT
7339064 GTTATCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (26 bp):
TAAATTTAATGGTGTCCTCCCTTTAT
Found at i:7341213 original size:23 final size:23
Alignment explanation
Indices: 7341180--7341226 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
7341170 GAAAGCCTCA
*
7341180 AATTTACGCAGTCAGCACTAGGG
1 AATTTAAGCAGTCAGCACTAGGG
*
7341203 AATTTAAGCAGTCAGGACTAGGG
1 AATTTAAGCAGTCAGCACTAGGG
7341226 A
1 A
7341227 CCCAGACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (23 bp):
AATTTAAGCAGTCAGCACTAGGG
Found at i:7344584 original size:22 final size:23
Alignment explanation
Indices: 7344559--7344610 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
7344549 CTAATATATT
7344559 CATATTATA-TATTTTAT-TTATA
1 CATATTATATTATTTTATCTT-TA
*
7344581 CATA-TATATTTTTTTATCTTTA
1 CATATTATATTATTTTATCTTTA
7344603 -ATATTATA
1 CATATTATA
7344611 GGAAAAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 7 0.27
22 17 0.65
23 2 0.08
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (23 bp):
CATATTATATTATTTTATCTTTA
Found at i:7345584 original size:112 final size:112
Alignment explanation
Indices: 7345445--7345654 Score: 325
Period size: 112 Copynumber: 1.9 Consensus size: 112
7345435 ATTTTAAAAT
* * *
7345445 GATACATTCTAAAATGCATTCAATTCAAATTTCTTCGAA-A-GTTTAAAATTTTTCATCCAAACG
1 GATACATTCTAAAATGCATTCAATTCAAATTTCTTC-AATATG-ATAAAATTCTTCATCCAAACA
*
7345508 TAGTGTTAAAATATATTTATAAAATTAATACTTAATTTTTTTTTTCATA
64 TAGTGTTAAAATATATTTATAAAATTAATAATTAATTTTTTTTTTCATA
* * *
7345557 GATACATTTTAAAATGCATTCATTTCAAATTTCTTCAATATGATAAAGTTCTTCATCCAAACATA
1 GATACATTCTAAAATGCATTCAATTCAAATTTCTTCAATATGATAAAATTCTTCATCCAAACATA
7345622 GTGTTAAAATATATTTATAAAATTAATAATTAA
66 GTGTTAAAATATATTTATAAAATTAATAATTAA
7345655 ATATATGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
111 2 0.02
112 86 0.97
113 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.42
Consensus pattern (112 bp):
GATACATTCTAAAATGCATTCAATTCAAATTTCTTCAATATGATAAAATTCTTCATCCAAACATA
GTGTTAAAATATATTTATAAAATTAATAATTAATTTTTTTTTTCATA
Found at i:7345681 original size:112 final size:112
Alignment explanation
Indices: 7345445--7345682 Score: 288
Period size: 112 Copynumber: 2.1 Consensus size: 112
7345435 ATTTTAAAAT
* * *
7345445 GATACAT-TCTAAAATGCATTCAATTCAAATTTCTTCGAAAGTTTAAAATTTTTCATCCAAACGT
1 GATACATCT-TAAAATGCATTCAATTCAAATTTCTTCGAAAGTATAAAATTCTTCATCCAAACAT
* * * **
7345509 AGTGTTAAAATATATTTATAAAATTAATACTTAATTTTTTTTTTCATA
65 AGTGTTAAAATATATTTATAAAATTAATAATTAATTATGTTTTGAATA
* * *
7345557 GATACATTTTAAAATGCATTCATTTCAAATTTCTTC-AATA-TGATAAAGTTCTTCATCCAAACA
1 GATACATCTTAAAATGCATTCAATTCAAATTTCTTCGAA-AGT-ATAAAATTCTTCATCCAAACA
*
7345620 TAGTGTTAAAATATATTTATAAAATTAATAATTAAATATATGTTTTGAATG
64 TAGTGTTAAAATATATTTATAAAATTAATAATT-AAT-TATGTTTTGAATA
7345671 GA-A-ATCTTAAAA
1 GATACATCTTAAAA
7345683 ACTTGATTGT
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
111 3 0.03
112 91 0.83
113 5 0.05
114 10 0.09
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.42
Consensus pattern (112 bp):
GATACATCTTAAAATGCATTCAATTCAAATTTCTTCGAAAGTATAAAATTCTTCATCCAAACATA
GTGTTAAAATATATTTATAAAATTAATAATTAATTATGTTTTGAATA
Found at i:7346303 original size:15 final size:16
Alignment explanation
Indices: 7346273--7346306 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7346263 GTATGTTTGA
*
7346273 ATTATAATTATTTTAT
1 ATTATAAATATTTTAT
7346289 ATTATAAAT-TTTTAT
1 ATTATAAATATTTTAT
7346304 ATT
1 ATT
7346307 TTCAAACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATAAATATTTTAT
Found at i:7346380 original size:19 final size:19
Alignment explanation
Indices: 7346358--7346408 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7346348 GTATTTTTAA
7346358 AATATTTTATATATAATAT
1 AATATTTTATATATAATAT
* * *
7346377 AATATTTTATTTTTATTAT
1 AATATTTTATATATAATAT
*
7346396 AA-ATTTAATATAT
1 AATATTTTATATAT
7346409 TAGTTTTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATTTTATATATAATAT
Found at i:7346404 original size:25 final size:26
Alignment explanation
Indices: 7346362--7346418 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
7346352 TTTTAAAATA
* *
7346362 TTTTA-TATATAATATAATATTTTAT
1 TTTTATTATATAATATAATATATTAG
*
7346387 TTTTATTATA-AATTTAATATATTAG
1 TTTTATTATATAATATAATATATTAG
7346412 TTTTATT
1 TTTTATT
7346419 TTCTAATGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTTATTATATAATATAATATATTAG
Found at i:7348124 original size:77 final size:73
Alignment explanation
Indices: 7347970--7348106 Score: 190
Period size: 76 Copynumber: 1.8 Consensus size: 73
7347960 CCTCTTTTGT
*
7347970 ATTT-TATGTATTTTATTATCATTATTATTATTATTATGTATATCTTTGTGTATTTATTTTTATT
1 ATTTATATGTATTTTATTATCATTATTATTATTATTATGTATATCTTTGTGTATATATTTTTATT
7348034 TAGATTAG
66 TAGATTAG
*
7348042 ATTTATATGTATTTTATTTATACAGTTATATATTATTATTAT-TAT-TTTTTGTGTAATATATTT
1 ATTTATATGTATTTTA-TTAT-CA-TTAT-TATTATTATTATGTATATCTTTGTGT-ATATATTT
7348105 TT
61 TT
7348107 GGGTTTATCT
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
72 4 0.07
73 11 0.19
74 4 0.07
75 10 0.18
76 16 0.28
77 12 0.21
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (73 bp):
ATTTATATGTATTTTATTATCATTATTATTATTATTATGTATATCTTTGTGTATATATTTTTATT
TAGATTAG
Found at i:7349254 original size:59 final size:59
Alignment explanation
Indices: 7349167--7349509 Score: 462
Period size: 59 Copynumber: 5.7 Consensus size: 59
7349157 AAAAATTCCA
7349167 AAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
1 AAAAAAA-A-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
* *
7349228 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCATAAATAAATTTC
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
* * *
7349287 GAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT--AAATTTC
* *
7349348 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTTC
*** *
7349408 -AAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATCGAAATTTC
1 AAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTCAG-AAAT--AAATTTC
*
7349468 --CAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7349510 CTACAAAAAA
Statistics
Matches: 257, Mismatches: 17, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
58 2 0.01
59 179 0.70
60 10 0.04
61 66 0.26
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (59 bp):
AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
Found at i:7349292 original size:120 final size:118
Alignment explanation
Indices: 7349168--7349509 Score: 487
Period size: 120 Copynumber: 2.9 Consensus size: 118
7349158 AAAATTCCAA
7349168 AAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT-AAATTTCAAAA
1 AAAAAA-A-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT-AGAAATCAAATTTCAAAA
*
7349232 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCATAAATAAA-TTTC
63 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTTC
*
7349287 GAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAA
1 -AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC-TAGAAATC-AAATTTCAAAA
*
7349352 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
63 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTTC
*** * *
7349408 AAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTC--CA
1 AAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTAG-AAATC-AAATTTCAAAA
*
7349470 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
63 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
7349510 CTACAAAAAA
Statistics
Matches: 205, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
118 81 0.40
119 4 0.02
120 116 0.57
121 4 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (118 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAGAAATCAAATTTCAAAAAAA
AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTTC
Found at i:7349475 original size:179 final size:182
Alignment explanation
Indices: 7349149--7349509 Score: 538
Period size: 179 Copynumber: 2.0 Consensus size: 182
7349139 TTTCTTTAAA
7349149 TAAAAATAAAAAATTCCAAAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAAAATTCCAAAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
7349214 CAGAAATAAATTTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCATAAA
66 CAGAAATAAATTTCAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCATAAA
7349279 TAAATTTCGAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
131 TAAATTTC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
7349332 TAAAAAT-CAAAATTTC-AAAAAAA-A-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAAAATTCCAAAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
7349393 TAGAAATAAATTTTC-AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-A
66 CAGAAATAAA-TTTCAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TCATA
*
7349456 AATCGAAATTTC-CAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
129 AAT--AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7349510 CTACAAAAAA
Statistics
Matches: 164, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
179 129 0.79
180 7 0.04
181 14 0.09
182 7 0.04
183 7 0.04
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (182 bp):
TAAAAATAAAAAATTCCAAAAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
CAGAAATAAATTTCAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCATAAA
TAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:7350628 original size:49 final size:48
Alignment explanation
Indices: 7350543--7350687 Score: 159
Period size: 49 Copynumber: 3.0 Consensus size: 48
7350533 TTAAAAGAAT
* *
7350543 TTTTCATGATAAGA-TTTTTAAAGTTATCGAGACTTTGTCTAAAGGAGC
1 TTTTCA-GATAAGATTTTTTAAAGTTATCAAGCCTTTGTCTAAAGGAGC
* ** *
7350591 TTTTCAGGATAAGATTTTTTAAAGTTATCAAGCCTTTGTTTAAAAAAGT
1 TTTTCA-GATAAGATTTTTTAAAGTTATCAAGCCTTTGTCTAAAGGAGC
* * *
7350640 TTTTCAAAGTAAGATTTTTTAAAGTTGTCAAACCTTT-TCTTAAAGGAG
1 TTTTCAGA-TAAGATTTTTTAAAGTTATCAAGCCTTTGTC-TAAAGGAG
7350688 ATTTCAAATT
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
48 15 0.19
49 66 0.81
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (48 bp):
TTTTCAGATAAGATTTTTTAAAGTTATCAAGCCTTTGTCTAAAGGAGC
Found at i:7350789 original size:92 final size:92
Alignment explanation
Indices: 7350673--7350994 Score: 335
Period size: 92 Copynumber: 3.5 Consensus size: 92
7350663 GTTGTCAAAC
* * * *
7350673 CTTTT-CTTAAAGGAGATTTCAAATTTATTTTCAAAAGTCATCAAGTATTTGCTTAAAAAAGCTT
1 CTTTTGCTTAAAAGAGCTTTCAAATTTATTTTCAAAAGTCATCAAGTCTTTGCTTAAAAGAGCTT
* *
7350737 TTAAATTTATTTTTAAAAATTATGGAG
66 TCAAATTTATTTTTAAAAGTTATGGAG
* * *
7350764 CTTTTGCTTAAAGGAGCTTTCAAATTTATTTTCAAAAGTCATTGAA-CCTTTGCTTAAAAGAGCT
1 CTTTTGCTTAAAAGAGCTTTCAAATTTATTTTCAAAAGTCA-TCAAGTCTTTGCTTAAAAGAGCT
* * * *
7350828 TTCCGATTTTAGTTTTAAATGTTATGGAG
65 TT-CAAATTTATTTTTAAAAGTTATGGAG
* * ** ** * * *
7350857 CCTTTGCTTAAAAGAGCTTTCAAATTTA-TTACAAAAGTTGTTGAGTCTTTACTTAAAGGAGATT
1 CTTTTGCTTAAAAGAGCTTTCAAATTTATTTTCAAAAGTCATCAAGTCTTTGCTTAAAAGAGCTT
* * *
7350921 TCAAATTTATTTTCAAAAGTTATTGAA
66 TCAAATTTATTTTTAAAAGTTATGGAG
* * * * *
7350948 CATTTGCTTAAAAGAGCTTTTAAATTTATTTTAAAAAATTATCAAGT
1 CTTTTGCTTAAAAGAGCTTTCAAATTTATTTTCAAAAGTCATCAAGT
7350995 TTTTAAAATT
Statistics
Matches: 189, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
91 52 0.28
92 88 0.47
93 49 0.26
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (92 bp):
CTTTTGCTTAAAAGAGCTTTCAAATTTATTTTCAAAAGTCATCAAGTCTTTGCTTAAAAGAGCTT
TCAAATTTATTTTTAAAAGTTATGGAG
Found at i:7350812 original size:138 final size:136
Alignment explanation
Indices: 7350670--7350994 Score: 373
Period size: 138 Copynumber: 2.4 Consensus size: 136
7350660 AAAGTTGTCA
* * * *
7350670 AACCTTTTCTTAAAGGAGATTTCAAATTTATTTTCAAAAGTCATCAAGTATTTGCTTAAAAAAGC
1 AACCTTTGCTTAAAAGAGCTTTCAAATTTATTTT-AAAAGTTATCAAGTATTTGCTTAAAAAAGC
* ** * *
7350735 TTTTAAATTTATTTTTAAAAATTATGGAG-CTTTTGCTTAAAGGAGCTTTCAAATTTATTTTCAA
65 TTTCAAATTTA-TTACAAAAATTATGGAGTC-TTTACTTAAAGGAGATTTCAAATTTATTTTCAA
7350799 AAGTCATTG
128 AAGTCATTG
* * * ** ** *
7350808 AACCTTTGCTTAAAAGAGCTTTCCGATTTTAGTTTTAAATGTTATGGAGCCTTTGCTTAAAAGAG
1 AACCTTTGCTTAAAAGAGCTTT-CAAATTTA-TTTTAAAAGTTATCAAGTATTTGCTTAAAAAAG
* * *
7350873 CTTTCAAATTTATTACAAAAGTTGTTGAGTCTTTACTTAAAGGAGATTTCAAATTTATTTTCAAA
64 CTTTCAAATTTATTACAAAAATTATGGAGTCTTTACTTAAAGGAGATTTCAAATTTATTTTCAAA
*
7350938 AGTTATTG
129 AGTCATTG
* * *
7350946 AACATTTGCTTAAAAGAGCTTTTAAATTTATTTTAAAAAATTATCAAGT
1 AACCTTTGCTTAAAAGAGCTTTCAAATTTATTTT-AAAAGTTATCAAGT
7350995 TTTTAAAATT
Statistics
Matches: 153, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
136 4 0.03
137 14 0.09
138 91 0.59
139 40 0.26
140 4 0.03
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (136 bp):
AACCTTTGCTTAAAAGAGCTTTCAAATTTATTTTAAAAGTTATCAAGTATTTGCTTAAAAAAGCT
TTCAAATTTATTACAAAAATTATGGAGTCTTTACTTAAAGGAGATTTCAAATTTATTTTCAAAAG
TCATTG
Found at i:7350867 original size:47 final size:45
Alignment explanation
Indices: 7350672--7350983 Score: 291
Period size: 46 Copynumber: 6.8 Consensus size: 45
7350662 AGTTGTCAAA
* * * * **
7350672 CCTTTTCTTAAAGGAGATTTCAAATTTATTTTCAAAAGTCATCAAG
1 CCTTTGCTTAAAAGAGCTTTCAAATTTATTTT-AAAAGTTATGGAG
** * * *
7350718 TATTTGCTTAAAAAAGCTTTTAAATTTATTTTTAAAAATTATGGAG
1 CCTTTGCTTAAAAGAGCTTTCAAATTTA-TTTTAAAAGTTATGGAG
* * * * *
7350764 CTTTTGCTTAAAGGAGCTTTCAAATTTATTTTCAAAAGTCATTGAA
1 CCTTTGCTTAAAAGAGCTTTCAAATTTATTTT-AAAAGTTATGGAG
* * *
7350810 CCTTTGCTTAAAAGAGCTTTCCGATTTTAGTTTTAAATGTTATGGAG
1 CCTTTGCTTAAAAGAGCTTT-CAAATTTA-TTTTAAAAGTTATGGAG
** * *
7350857 CCTTTGCTTAAAAGAGCTTTCAAATTTATTACAAAAGTTGTTGAG
1 CCTTTGCTTAAAAGAGCTTTCAAATTTATTTTAAAAGTTATGGAG
* * * * * *
7350902 TCTTTACTTAAAGGAGATTTCAAATTTATTTTCAAAAGTTATTGAA
1 CCTTTGCTTAAAAGAGCTTTCAAATTTATTTT-AAAAGTTATGGAG
* *
7350948 CATTTGCTTAAAAGAGCTTTTAAATTTATTTTAAAA
1 CCTTTGCTTAAAAGAGCTTTCAAATTTATTTTAAAA
7350984 AATTATCAAG
Statistics
Matches: 212, Mismatches: 49, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
45 46 0.22
46 123 0.58
47 39 0.18
48 4 0.02
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (45 bp):
CCTTTGCTTAAAAGAGCTTTCAAATTTATTTTAAAAGTTATGGAG
Found at i:7354027 original size:136 final size:136
Alignment explanation
Indices: 7353848--7354101 Score: 465
Period size: 136 Copynumber: 1.9 Consensus size: 136
7353838 ATAATAACTT
*
7353848 ACCAAATAAAAAGCTTTTTGTCATTTGCATGAGCTTAATAAAAAATTAAAAATTACTCTTTCTTT
1 ACCAAATAAAAAGCTTTTTGTCATTTGCATGAGCTTAATAAAAAATTAAAAACTACTCTTTCTTT
*
7353913 ATCTTAAGAAGTAAAGGGTAAATAAAGATGATGAGCCAGAAGTTGAGGCTACTCTTAAGGCTGAG
66 ACCTTAAGAAGTAAAGGGTAAATAAAGATGATGAGCCAGAAGTTGAGGCTACTCTTAAGGCTGAG
7353978 GTCTTA
131 GTCTTA
7353984 ACCAAATAAAAAGCTTTTTGTCGA-TTGCATGAGCTTAATAAAAAATTAAAAACTACTCTTTCTT
1 ACCAAATAAAAAGCTTTTTGTC-ATTTGCATGAGCTTAATAAAAAATTAAAAACTACTCTTTCTT
*
7354048 TACCTTAAGAAGTAAATGGTAAATAAAGATGATGAGCCAGAAGTTGAGGCTACT
65 TACCTTAAGAAGTAAAGGGTAAATAAAGATGATGAGCCAGAAGTTGAGGCTACT
7354102 TCCGAGGCTG
Statistics
Matches: 114, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
136 113 0.99
137 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (136 bp):
ACCAAATAAAAAGCTTTTTGTCATTTGCATGAGCTTAATAAAAAATTAAAAACTACTCTTTCTTT
ACCTTAAGAAGTAAAGGGTAAATAAAGATGATGAGCCAGAAGTTGAGGCTACTCTTAAGGCTGAG
GTCTTA
Found at i:7381190 original size:71 final size:71
Alignment explanation
Indices: 7381045--7381266 Score: 311
Period size: 71 Copynumber: 3.1 Consensus size: 71
7381035 TCTCCTAAGT
* *
7381045 AAACATTCTCATTACTTATTCTTCTATTTTAAAAGAAAACATTCCTATTAATTATTATTCTATTT
1 AAACACTCACATTACTTATTCTTCTATTTTAAAAG-AAACATTCCTATTAATTATTATTCTATTT
7381110 TTTAGAG
65 TTTAGAG
7381117 AAACACTCACATTACTTATTCTTCTATTTTAAAAGAAACATTCCTATTAATTATTATTCTATTTT
1 AAACACTCACATTACTTATTCTTCTATTTTAAAAGAAACATTCCTATTAATTATTATTCTATTTT
7381182 TTAGAG
66 TTAGAG
* * * * *
7381188 AAACACTCACAGTACTTATTCTCTTCTATTTTTTAAAAGAAACACTCTTATTACTAATT-TTACT
1 AAACACTCACATTACTTA-T-TCTTCTA--TTTTAAAAGAAACATTCCTATTAATTATTATT-CT
*
7381252 ATTTTTTAGGG
61 ATTTTTTAGAG
7381263 AAAC
1 AAAC
7381267 TCTTCCTTAT
Statistics
Matches: 137, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
71 53 0.39
72 34 0.25
73 7 0.05
74 2 0.01
75 41 0.30
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.45
Consensus pattern (71 bp):
AAACACTCACATTACTTATTCTTCTATTTTAAAAGAAACATTCCTATTAATTATTATTCTATTTT
TTAGAG
Found at i:7381207 original size:36 final size:36
Alignment explanation
Indices: 7381045--7381266 Score: 175
Period size: 36 Copynumber: 6.1 Consensus size: 36
7381035 TCTCCTAAGT
* * * * *
7381045 AAACATTCTCATTACTTATTCTTCTA-TTTTAAAAG
1 AAACACTCACATTACTTATTATTCTATTTTTTAGAG
* *
7381080 AAAACATTC-CTATTAATTATTATTCTATTTTTTAGAG
1 -AAACACTCAC-ATTACTTATTATTCTATTTTTTAGAG
* * *
7381117 AAACACTCACATTACTTATTCTTCTA-TTTTAAAAG
1 AAACACTCACATTACTTATTATTCTATTTTTTAGAG
* *
7381152 AAACATTC-CTATTAATTATTATTCTATTTTTTAGAG
1 AAACACTCAC-ATTACTTATTATTCTATTTTTTAGAG
* * *
7381188 AAACACTCACAGTACTTATTCTCTTCTATTTTTTAAAAG
1 AAACACTCACATTACTTA-T-TATTCTATTTTTT-AGAG
** * *
7381227 AAACACTCTTATTACTAATT-TTACTATTTTTTAGGG
1 AAACACTCACATTACTTATTATT-CTATTTTTTAGAG
7381263 AAAC
1 AAAC
7381267 TCTTCCTTAT
Statistics
Matches: 151, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
34 1 0.01
35 29 0.19
36 71 0.47
37 20 0.13
38 13 0.09
39 17 0.11
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.45
Consensus pattern (36 bp):
AAACACTCACATTACTTATTATTCTATTTTTTAGAG
Found at i:7381530 original size:49 final size:48
Alignment explanation
Indices: 7381250--7381597 Score: 223
Period size: 47 Copynumber: 7.2 Consensus size: 48
7381240 ACTAATTTTA
* * *
7381250 CTATTTTTTAGGGAAACTCTTC-CTTATCTATT-TCTTTTAATAATTT-TC
1 CTATTTTTTAGGGAAACAC-TCACTTACCTATTCT-TTTTAAT-ATTTCTT
* * *
7381298 CTATTTTTTTTAGAGAAACACTC-CATAACTTATT-TCTTTTAATAATTT-TT
1 CTA--TTTTTTAGGGAAACACTCAC-TTACCTATTCT-TTTTAAT-ATTTCTT
** * * *
7381348 CTATTTTAAAGTGAGACACTC-CATTACCTATTCTTTTTAATATTTTTT
1 CTATTTTTTAGGGAAACACTCAC-TTACCTATTCTTTTTAATATTTCTT
* * * ** * *
7381396 CTATTTTTTAAGGAAA-GCTCCCTTATTTTTTCCTTTTAATATTTCTT
1 CTATTTTTTAGGGAAACACTCACTTACCTATTCTTTTTAATATTTCTT
* ** * *
7381443 CTATTTTTTTTAGGAAAACACTCTTTTACTTA-TATTTTTAATATTTCTT
1 CTA--TTTTTTAGGGAAACACTCACTTACCTATTCTTTTTAATATTTCTT
* * * *
7381492 CTATTTTTTAGGGAAATACTCGCTTACCTATTCTTTTTTATAATTTTTT
1 CTATTTTTTAGGGAAACACTCACTTACCTATTCTTTTTAAT-ATTTCTT
* * * *
7381541 TTATTTTTTAGGGAAACACAACAATTATCTATTCTTTTT-A-ATTTCTT
1 CTATTTTTTAGGGAAACAC-TCACTTACCTATTCTTTTTAATATTTCTT
7381588 CTATTTTTTA
1 CTATTTTTTA
7381598 AAGAAATACT
Statistics
Matches: 240, Mismatches: 48, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
47 67 0.28
48 55 0.23
49 57 0.24
50 61 0.25
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.54
Consensus pattern (48 bp):
CTATTTTTTAGGGAAACACTCACTTACCTATTCTTTTTAATATTTCTT
Found at i:7381585 original size:145 final size:142
Alignment explanation
Indices: 7381245--7381596 Score: 363
Period size: 145 Copynumber: 2.4 Consensus size: 142
7381235 TTATTACTAA
* *
7381245 TTTTACTATTTTTTAGGGAAACTCTTCCTTATCTATTTCTTTTAATAATTT-TCCTATTTTTTTT
1 TTTTTCTATTTTTTAGGGAAACTC--CCTTATCTA-TTCTTTT--TAATTTCTTCTATTTTTTTT
* * *
7381309 AGAGAAACACTCCATAACTTATTTCTTTTAATAATTTTTCTATTTTAAAGTGAGACACTCCATTA
61 AGAGAAACACTCCATAACTTATATCTTTTAATAATTTTTCTATTTTAAAGGGAAACACTCCATTA
7381374 CCTATTCTTTTTAATAT
126 CCTATTCTTTTTAATAT
* * * *
7381391 TTTTTCTATTTTTTAAGGAAAGCTCCCTTATTTTTTCCTTTTAATATTTCTTCTATTTTTTTTAG
1 TTTTTCTATTTTTTAGGGAAA-CTCCCTTATCTATT-CTTTTTA-ATTTCTTCTATTTTTTTTAG
** * ** *
7381456 -GAAAACACTCTTTTACTTATAT-TTTTAAT-ATTTCTTCTATTTTTTAGGGAAATACTCGC-TT
63 AG-AAACACTCCATAACTTATATCTTTTAATAATTT-TTCTATTTTAAAGGGAAACACTC-CATT
*
7381517 ACCTATTCTTTTTTATAAT
125 ACCTATTCTTTTTAAT-AT
* * *
7381536 TTTTTTTATTTTTTAGGGAAACACAACAATTATCTATTCTTTTTAATTTCTTCTATTTTTT
1 TTTTTCTATTTTTTAGGGAAACTC--C-CTTATCTATTCTTTTTAATTTCTTCTATTTTTT
7381597 AAAGAAATAC
Statistics
Matches: 172, Mismatches: 23, Indels: 23
0.79 0.11 0.11
Matches are distributed among these distances:
143 5 0.03
144 51 0.30
145 80 0.47
146 26 0.15
147 10 0.06
ACGTcount: A:0.25, C:0.14, G:0.06, T:0.55
Consensus pattern (142 bp):
TTTTTCTATTTTTTAGGGAAACTCCCTTATCTATTCTTTTTAATTTCTTCTATTTTTTTTAGAGA
AACACTCCATAACTTATATCTTTTAATAATTTTTCTATTTTAAAGGGAAACACTCCATTACCTAT
TCTTTTTAATAT
Found at i:7382311 original size:12 final size:12
Alignment explanation
Indices: 7382294--7382318 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7382284 TGCTTTATAG
7382294 AATAACACTTTC
1 AATAACACTTTC
7382306 AATAACACTTTC
1 AATAACACTTTC
7382318 A
1 A
7382319 CCAAACAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (12 bp):
AATAACACTTTC
Found at i:7389930 original size:1 final size:1
Alignment explanation
Indices: 7389924--7389948 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7389914 AAGAGTAAAG
7389924 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
7389949 AATGCTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7393551 original size:41 final size:41
Alignment explanation
Indices: 7393501--7393581 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
7393491 CTCTAGTTCA
7393501 AACCAAATTAAGCTTTAATTATATATACTGCATTACACTTT
1 AACCAAATTAAGCTTTAATTATATATACTGCATTACACTTT
* * * *
7393542 AACCGAATTAATCTTTGATTGTATATACTGCATTACACTT
1 AACCAAATTAAGCTTTAATTATATATACTGCATTACACTT
7393582 CAACAATAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (41 bp):
AACCAAATTAAGCTTTAATTATATATACTGCATTACACTTT
Found at i:7393860 original size:2 final size:2
Alignment explanation
Indices: 7393853--7393878 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7393843 TTGGTCTATG
7393853 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7393879 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7396988 original size:19 final size:21
Alignment explanation
Indices: 7396961--7397000 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
7396951 GACTCTACAA
*
7396961 ATAACAAATA-TAT-TTTTAT
1 ATAAAAAATATTATGTTTTAT
7396980 ATAAAAAATATTATGTTTTAT
1 ATAAAAAATATTATGTTTTAT
7397001 TAATTATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
ATAAAAAATATTATGTTTTAT
Found at i:7397495 original size:19 final size:19
Alignment explanation
Indices: 7397471--7397510 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
7397461 AAATTTAAAA
7397471 AATATGCATTATTAAAGTT
1 AATATGCATTATTAAAGTT
*
7397490 AATATGTATTATTAAAGTT
1 AATATGCATTATTAAAGTT
7397509 AA
1 AA
7397511 AAGTAGGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (19 bp):
AATATGCATTATTAAAGTT
Found at i:7406161 original size:15 final size:17
Alignment explanation
Indices: 7406141--7406174 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
7406131 CTTTTGGCCC
7406141 ATAAAAT-ATT-TTGTT
1 ATAAAATAATTATTGTT
7406156 ATAAAATAATTATTGTT
1 ATAAAATAATTATTGTT
7406173 AT
1 AT
7406175 TTATTTACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 3 0.18
17 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
ATAAAATAATTATTGTT
Found at i:7407390 original size:45 final size:45
Alignment explanation
Indices: 7407326--7407425 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
7407316 CTTTCGTTAA
* **
7407326 CATCTGCTTCTACTTCTTCAAGCTCTTCAGGCTTCTCTTTTGCCC
1 CATCTCCTTCTACTTCTTCAAGCTCTTCAGGCTTCTCGATTGCCC
* *
7407371 CATCTCCTTCTGCTTCTTCAAGCTCTTCAGGCTTCTCGATTGCTC
1 CATCTCCTTCTACTTCTTCAAGCTCTTCAGGCTTCTCGATTGCCC
*
7407416 CATCTTCTTC
1 CATCTCCTTC
7407426 CTTTGGATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.11, C:0.36, G:0.11, T:0.42
Consensus pattern (45 bp):
CATCTCCTTCTACTTCTTCAAGCTCTTCAGGCTTCTCGATTGCCC
Found at i:7412175 original size:1 final size:1
Alignment explanation
Indices: 7412169--7412193 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7412159 ATTGTATTTC
7412169 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
7412194 CCGTATTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7413085 original size:2 final size:2
Alignment explanation
Indices: 7413078--7413115 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7413068 GAAAGCATTC
7413078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7413116 CTTGTTTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7413569 original size:16 final size:17
Alignment explanation
Indices: 7413548--7413586 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
7413538 TAAAATAATA
*
7413548 AAAATA-TTTTTATATT
1 AAAATAGTTTTTAAATT
7413564 AAAATATGTTTTTAAATT
1 AAAATA-GTTTTTAAATT
7413582 AAAAT
1 AAAAT
7413587 TAAATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
18 14 0.70
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AAAATAGTTTTTAAATT
Found at i:7414046 original size:26 final size:27
Alignment explanation
Indices: 7414017--7414077 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
7414007 TTCAATTCAC
*
7414017 ATATATAAAAATTAAAATTAA-AAATT
1 ATATATAAAAATTAAAATTAATAAAAT
** **
7414043 ATATATGTAAATTAAGTTTAATAAAAT
1 ATATATAAAAATTAAAATTAATAAAAT
7414070 ATATATAA
1 ATATATAA
7414078 TTCTTATTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
ATATATAAAAATTAAAATTAATAAAAT
Found at i:7414130 original size:15 final size:15
Alignment explanation
Indices: 7414097--7414136 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7414087 TTAATTTATA
*
7414097 TATATATGAATTAATT
1 TATATAT-AATTAACT
*
7414113 TATATATAATTCACT
1 TATATATAATTAACT
7414128 TATATATAA
1 TATATATAA
7414137 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (15 bp):
TATATATAATTAACT
Found at i:7415034 original size:12 final size:12
Alignment explanation
Indices: 7415017--7415042 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7415007 AATATAAATA
7415017 AAATTTTAATTC
1 AAATTTTAATTC
7415029 AAATTTTAATTC
1 AAATTTTAATTC
7415041 AA
1 AA
7415043 TTAATTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (12 bp):
AAATTTTAATTC
Found at i:7415377 original size:8 final size:8
Alignment explanation
Indices: 7415357--7415402 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
7415347 TATTATTTTT
7415357 TAAA-ATA
1 TAAATATA
*
7415364 TAAATATT
1 TAAATATA
7415372 TAAATATA
1 TAAATATA
*
7415380 TAATTATA
1 TAAATATA
7415388 TAAATATA
1 TAAATATA
7415396 TTAAATA
1 -TAAATA
7415403 AAAATTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 4 0.12
8 23 0.70
9 6 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TAAATATA
Found at i:7415391 original size:24 final size:24
Alignment explanation
Indices: 7415361--7415410 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7415351 ATTTTTTAAA
*
7415361 ATATAAATAT-TTAAATATATAATT
1 ATATAAATATATTAAATA-AAAATT
7415385 ATATAAATATATTAAATAAAAATT
1 ATATAAATATATTAAATAAAAATT
7415409 AT
1 AT
7415411 TTTTTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
ATATAAATATATTAAATAAAAATT
Found at i:7415837 original size:40 final size:39
Alignment explanation
Indices: 7415781--7415860 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 39
7415771 TTTCAGCCGT
*
7415781 AACTTTATGTGACCATCACTTTTGCTTTAAAAAAAAATTA
1 AACTTTATGGGACCATCACTTTTGCTTT-AAAAAAAATTA
* *
7415821 AACTTTATGGGGCCATCCCTTTTGCTTTAAAAAAAATTA
1 AACTTTATGGGACCATCACTTTTGCTTTAAAAAAAATTA
7415860 A
1 A
7415861 TCACCCGTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 12 0.32
40 25 0.68
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (39 bp):
AACTTTATGGGACCATCACTTTTGCTTTAAAAAAAATTA
Found at i:7416209 original size:24 final size:24
Alignment explanation
Indices: 7416182--7416233 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7416172 AATTATTTTA
* *
7416182 AATATTTATATTCGATATATTATT
1 AATATATAAATTCGATATATTATT
** *
7416206 AATATATAAATTTTATATATTTTT
1 AATATATAAATTCGATATATTATT
7416230 AATA
1 AATA
7416234 AATTTGATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
AATATATAAATTCGATATATTATT
Found at i:7416503 original size:2 final size:2
Alignment explanation
Indices: 7416496--7416551 Score: 60
Period size: 2 Copynumber: 28.0 Consensus size: 2
7416486 TAAGTTTTTC
* * *
7416496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA -A CTT TA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
*
7416538 TA TA TC TA TA TA TA
1 TA TA TA TA TA TA TA
7416552 ATGATCTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7418525 original size:59 final size:57
Alignment explanation
Indices: 7418317--7418524 Score: 179
Period size: 58 Copynumber: 3.5 Consensus size: 57
7418307 TTATTTTTGA
* * * * *
7418317 ATAATATCA-TTATCATAATTATGAAAATACCTTACATATCGTATTAAGTTAAAATTATT
1 ATAATATCATTTATCATAATTATGAAAATACCTTTC-CATC-AATTGA-TCAAAATTATT
* * * *
7418376 ATAATATCTTTTCAACTATAATTATGAAAATCACCTATTACCAT-GATTGACCAAAATTATT
1 ATAATATCATTT-ATC-ATAATTATGAAAAT-ACCT-TT-CCATCAATTGATCAAAATTATT
** * * *
7418437 ATAAT-TTTTTTATCATAATTATAAAAATATCTTTCCATCAAAATTGATCAAAATAATT
1 ATAATATCATTTATCATAATTATGAAAATACCTTTCCATC--AATTGATCAAAATTATT
7418495 ATAATATCATTTATCATAATTATGAAAATA
1 ATAATATCATTTATCATAATTATGAAAATA
7418525 TTTTTATAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
55 4 0.03
56 2 0.02
57 3 0.02
58 32 0.26
59 31 0.26
60 7 0.06
61 16 0.13
62 18 0.15
63 4 0.03
64 3 0.02
65 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (57 bp):
ATAATATCATTTATCATAATTATGAAAATACCTTTCCATCAATTGATCAAAATTATT
Found at i:7418527 original size:21 final size:20
Alignment explanation
Indices: 7418489--7418535 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
7418479 ATTGATCAAA
*
7418489 ATAATTATAATATCATTTATC
1 ATAATTATAAAATCATTT-TC
*
7418510 ATAATTATGAAAAT-ATTTTT
1 ATAATTAT-AAAATCATTTTC
7418530 ATAATT
1 ATAATT
7418536 TTTTCATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 12 0.52
22 4 0.17
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (20 bp):
ATAATTATAAAATCATTTTC
Found at i:7419371 original size:2 final size:2
Alignment explanation
Indices: 7419364--7419399 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
7419354 TTCTAGTATG
7419364 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7419400 CATAATTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7422746 original size:18 final size:19
Alignment explanation
Indices: 7422723--7422771 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
7422713 TTTTTGGTTG
7422723 GATTTAGGGTTTGA-GTCA
1 GATTTAGGGTTTGAGGTCA
* * *
7422741 GATTTAGTGTTAGAGGTTA
1 GATTTAGGGTTTGAGGTCA
7422760 GATTTAGGGTTT
1 GATTTAGGGTTT
7422772 AGGGTTTGGT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.22, C:0.02, G:0.33, T:0.43
Consensus pattern (19 bp):
GATTTAGGGTTTGAGGTCA
Found at i:7422777 original size:19 final size:19
Alignment explanation
Indices: 7422718--7422777 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
7422708 TAAGATTTTT
*
7422718 GGTTGGATTTAGGGTTT-G
1 GGTTAGATTTAGGGTTTAG
* * *
7422736 AGTCAGATTTAGTG-TTAG
1 GGTTAGATTTAGGGTTTAG
7422754 AGGTTAGATTTAGGGTTTAG
1 -GGTTAGATTTAGGGTTTAG
7422774 GGTT
1 GGTT
7422778 TGGTATCTGG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 2 0.06
18 11 0.34
19 15 0.47
20 4 0.12
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.42
Consensus pattern (19 bp):
GGTTAGATTTAGGGTTTAG
Found at i:7423953 original size:27 final size:26
Alignment explanation
Indices: 7423875--7423954 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
7423865 AATATCATAT
*
7423875 TTTTCTTAAACACAAATAATTTCAAA
1 TTTTCTTAAACAAAAATAATTTCAAA
** ** *
7423901 AATTAATAAA-AAAATAGAATTATCAAA
1 TTTTCTTAAACAAAA-ATAATT-TCAAA
7423928 TTTTCCTTAAACAAAAATAATTTCAAA
1 TTTT-CTTAAACAAAAATAATTTCAAA
7423955 AATTGAGGAA
Statistics
Matches: 39, Mismatches: 11, Indels: 7
0.68 0.19 0.12
Matches are distributed among these distances:
25 3 0.08
26 11 0.28
27 12 0.31
28 9 0.23
29 4 0.10
ACGTcount: A:0.54, C:0.11, G:0.01, T:0.34
Consensus pattern (26 bp):
TTTTCTTAAACAAAAATAATTTCAAA
Found at i:7423984 original size:53 final size:53
Alignment explanation
Indices: 7423831--7424091 Score: 205
Period size: 54 Copynumber: 4.9 Consensus size: 53
7423821 AAAAAATAAT
* * * *
7423831 AAAATAATTTTAAAAATTGAGAAAAAAATGTTGAAATATCATATTTTTCTTAAACA
1 AAAATAATTTCAAAAATTGAG-GAAAAA-GTTAAAATATCA-ATTTTCCTTAAACA
* ** ** *
7423887 CAAATAATTTCAAAAATT-AATAAAAAAATAGAATTATCAAATTTTCCTTAAACA
1 AAAATAATTTCAAAAATTGAGGAAAAAGTTA-AAATATC-AATTTTCCTTAAACA
* *
7423941 AAAATAATTTCAAAAATTGAGGAAAAAGTTAAAATATCAATTTTTCTTTGAA-A
1 AAAATAATTTCAAAAATTGAGGAAAAAGTTAAAATATCAA-TTTTCCTTAAACA
* * * *
7423994 AAAATAATATAAAAAATTGAGGAAAAA-TT-GAA-A--AA-TTTCCTCAAACAA
1 AAAATAATTTCAAAAATTGAGGAAAAAGTTAAAATATCAATTTTCCTTAAAC-A
* * * *
7424042 AAAATAATTTCAAGATTTTAGGGAAAAAGTTGAAATATCAATTTTTCCTT
1 AAAATAATTTCAAAAATTGA-GGAAAAAGTTAAAATATCAA-TTTTCCTT
7424092 TAAATTAAAA
Statistics
Matches: 161, Mismatches: 30, Indels: 28
0.74 0.14 0.13
Matches are distributed among these distances:
46 7 0.04
48 18 0.11
49 7 0.04
50 3 0.02
51 4 0.02
52 3 0.02
53 29 0.18
54 58 0.36
55 10 0.06
56 22 0.14
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.33
Consensus pattern (53 bp):
AAAATAATTTCAAAAATTGAGGAAAAAGTTAAAATATCAATTTTCCTTAAACA
Found at i:7424683 original size:19 final size:19
Alignment explanation
Indices: 7424659--7424855 Score: 89
Period size: 19 Copynumber: 10.3 Consensus size: 19
7424649 TGGTTTAGAG
*
7424659 TTTAGGATTTGATGTTAGT
1 TTTAGGATTTGAGGTTAGT
* * *
7424678 TTTAGGTTTTAAGGTTTAGGG
1 TTTAGGATTTGAGG-TTA-GT
* * *
7424699 TTTGGGGTTTGAGGTTGGT
1 TTTAGGATTTGAGGTTAGT
7424718 TTTAGGATTTGAGGTT-GAT
1 TTTAGGATTTGAGGTTAG-T
* *
7424737 TTTAGGGTTTTAGGTTTTAG-
1 TTTAGGATTTGAGG--TTAGT
* * *
7424757 TTTGGGGTTTGAGCTTAGTT
1 TTTAGGATTTGAGGTTAG-T
* *
7424777 TTTATG-TTT-AGGGTTTG-
1 TTTAGGATTTGA-GGTTAGT
* * * *
7424794 TTTGGGGTTTTAGGTTAGG
1 TTTAGGATTTGAGGTTAGT
* * *
7424813 TTTGGGGTTTGAGGTTGGT
1 TTTAGGATTTGAGGTTAGT
* *
7424832 TTTAGGGTTTGAGGTTAAT
1 TTTAGGATTTGAGGTTAGT
7424851 TTTAG
1 TTTAG
7424856 AGTTTTAGGT
Statistics
Matches: 137, Mismatches: 29, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
17 4 0.03
18 14 0.10
19 84 0.61
20 20 0.15
21 14 0.10
22 1 0.01
ACGTcount: A:0.14, C:0.01, G:0.35, T:0.50
Consensus pattern (19 bp):
TTTAGGATTTGAGGTTAGT
Found at i:7424710 original size:40 final size:40
Alignment explanation
Indices: 7424650--7424733 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
7424640 GTTTAAAATT
* *
7424650 GGTTTAGAGTTTAGGATTTGATGTTAGTTTTAGGTTTTAA
1 GGTTTAGAGTTTAGGATTTGAGGTTAGTTTTAGGATTTAA
* * * * *
7424690 GGTTTAGGGTTTGGGGTTTGAGGTTGGTTTTAGGATTTGA
1 GGTTTAGAGTTTAGGATTTGAGGTTAGTTTTAGGATTTAA
7424730 GGTT
1 GGTT
7424734 GATTTTAGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.48
Consensus pattern (40 bp):
GGTTTAGAGTTTAGGATTTGAGGTTAGTTTTAGGATTTAA
Found at i:7424860 original size:19 final size:19
Alignment explanation
Indices: 7424819--7424866 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7424809 TAGGTTTGGG
** *
7424819 GTTTGAGGTTGGTTTTAGG
1 GTTTGAGGTTAATTTTAGA
7424838 GTTTGAGGTTAATTTTAGA
1 GTTTGAGGTTAATTTTAGA
*
7424857 GTTTTAGGTT
1 GTTTGAGGTT
7424867 TTGGTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (19 bp):
GTTTGAGGTTAATTTTAGA
Found at i:7424866 original size:38 final size:38
Alignment explanation
Indices: 7424705--7424898 Score: 121
Period size: 38 Copynumber: 5.1 Consensus size: 38
7424695 AGGGTTTGGG
* * * *
7424705 GTTTGAGGTTGGTTTTAGGATTTGAGGTTGATTTTAGG
1 GTTTTAGGTTGGTTTTAGGGTTTGAGGTTAATTTTAGA
* * * * *
7424743 GTTTTAGGTT-TTAGTTTGGGGTTTGAGCTTAGTTTT-TA
1 GTTTTAGGTTGGT--TTTAGGGTTTGAGGTTAATTTTAGA
* * * ** * *
7424781 -TGTTTAGGGTTTG-TTTGGGGTTTTAGGTTAGGTTTGGG
1 GT-TTTA-GGTTGGTTTTAGGGTTTGAGGTTAATTTTAGA
*
7424819 GTTTGAGGTTGGTTTTAGGGTTTGAGGTTAATTTTAGA
1 GTTTTAGGTTGGTTTTAGGGTTTGAGGTTAATTTTAGA
* *
7424857 GTTTTAGGTTTTGG-TTTAAGGTTTGAGGTTGA-TTTAGA
1 GTTTTAGG--TTGGTTTTAGGGTTTGAGGTTAATTTTAGA
7424895 GTTT
1 GTTT
7424899 AGGGTTAACT
Statistics
Matches: 120, Mismatches: 26, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
37 26 0.22
38 52 0.43
39 38 0.32
40 4 0.03
ACGTcount: A:0.14, C:0.01, G:0.35, T:0.51
Consensus pattern (38 bp):
GTTTTAGGTTGGTTTTAGGGTTTGAGGTTAATTTTAGA
Found at i:7424916 original size:37 final size:38
Alignment explanation
Indices: 7424832--7424943 Score: 104
Period size: 37 Copynumber: 3.0 Consensus size: 38
7424822 TGAGGTTGGT
* * * * ***
7424832 TTTAGGGTTTGAGGTTAATTTTAGAGTTTTAGGTTTTGG
1 TTTAAGGTTTGAGGTTGACTTTAGAG-TTTAGGGTTAAC
7424871 TTTAAGGTTTGAGGTTGA-TTTAGAGTTTAGGGTTAAC
1 TTTAAGGTTTGAGGTTGACTTTAGAGTTTAGGGTTAAC
* *
7424908 TTTGAGGTTTTAGGTTGACTTTCAGA-TTTA-GGTTAA
1 TTTAAGGTTTGAGGTTGACTTT-AGAGTTTAGGGTTAA
7424944 GATTTTGGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
37 30 0.48
38 14 0.22
39 19 0.30
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.47
Consensus pattern (38 bp):
TTTAAGGTTTGAGGTTGACTTTAGAGTTTAGGGTTAAC
Found at i:7424917 original size:114 final size:115
Alignment explanation
Indices: 7424672--7424923 Score: 321
Period size: 114 Copynumber: 2.2 Consensus size: 115
7424662 AGGATTTGAT
* * *
7424672 GTTAGTTTTAGGTTTTAAGGTTTAGGGTTTGGGGTTTGAGGTTGGTTTTAGGATTTGAGGTTGAT
1 GTTACTTTGAGGTTTT-AGG-TTAGGGTTTGGGGTTTGAGGTTGGTTTTAGGATTTGAGGTTAAT
* ** * *
7424737 TTTAGGGTTTTAGGTTTTAGTTTGGGGTTTGAGCTTAGTTTTTATGTTTAGG
64 TTTAGAGTTTTAGGTTTTAGTTTAAGGTTTGAGCTTAGTATTTAAGTTTAGG
** * *
7424789 GTTTGTTTGGGGTTTTAGGTTA-GGTTTGGGGTTTGAGGTTGGTTTTAGGGTTTGAGGTTAATTT
1 GTTACTTTGAGGTTTTAGGTTAGGGTTTGGGGTTTGAGGTTGGTTTTAGGATTTGAGGTTAATTT
* *
7424853 TAGAGTTTTAGGTTTTGGTTTAAGGTTTGAGGTT-G-ATTTAGAGTTTAGG
66 TAGAGTTTTAGGTTTTAGTTTAAGGTTTGAGCTTAGTATTTA-AGTTTAGG
7424902 GTTAACTTTGAGGTTTTAGGTT
1 GTT-ACTTTGAGGTTTTAGGTT
7424924 GACTTTCAGA
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
112 4 0.03
113 11 0.09
114 84 0.71
115 3 0.03
116 3 0.03
117 13 0.11
ACGTcount: A:0.15, C:0.01, G:0.35, T:0.50
Consensus pattern (115 bp):
GTTACTTTGAGGTTTTAGGTTAGGGTTTGGGGTTTGAGGTTGGTTTTAGGATTTGAGGTTAATTT
TAGAGTTTTAGGTTTTAGTTTAAGGTTTGAGCTTAGTATTTAAGTTTAGG
Found at i:7424923 original size:19 final size:18
Alignment explanation
Indices: 7424896--7424943 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7424886 TGATTTAGAG
* *
7424896 TTTAGGGTTAACTTTGAGGT
1 TTTA-GGTTAACTTTCA-GA
*
7424916 TTTAGGTTGACTTTCAGA
1 TTTAGGTTAACTTTCAGA
7424934 TTTAGGTTAA
1 TTTAGGTTAA
7424944 GATTTTGGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 10 0.42
19 10 0.42
20 4 0.17
ACGTcount: A:0.23, C:0.06, G:0.25, T:0.46
Consensus pattern (18 bp):
TTTAGGTTAACTTTCAGA
Found at i:7424997 original size:20 final size:19
Alignment explanation
Indices: 7424974--7425146 Score: 91
Period size: 20 Copynumber: 8.7 Consensus size: 19
7424964 TGTAATTGTC
7424974 TGACTTTGTGATTTAGGGTT
1 TGACTTTG-GATTTAGGGTT
** **
7424994 TGACCATGAGATTTAAAGTT
1 TGACTTTG-GATTTAGGGTT
* ** *
7425014 TAACCTTT-GATTGGGGGGT
1 TGA-CTTTGGATTTAGGGTT
7425033 TGACTTTAGGATTTAGGGTT
1 TGACTTT-GGATTTAGGGTT
* * *
7425053 TGACCTTGGATTGGATGG-T
1 TGACTTTGGATT-TAGGGTT
*
7425072 TGACTTTGG-TGTTTGGAGTT
1 TGACTTTGGAT-TTAGG-GTT
* *
7425092 TGACTTTAAGATTTAAGGTT
1 TGACTTT-GGATTTAGGGTT
*
7425112 TGACCTTAGGATTTAGGGGTT
1 TGA-CTTTGGATTTA-GGGTT
7425133 TGACTTTAGGATTT
1 TGACTTT-GGATTT
7425147 GGATTAGGGT
Statistics
Matches: 110, Mismatches: 31, Indels: 23
0.67 0.19 0.14
Matches are distributed among these distances:
18 6 0.05
19 24 0.22
20 57 0.52
21 22 0.20
22 1 0.01
ACGTcount: A:0.20, C:0.08, G:0.29, T:0.43
Consensus pattern (19 bp):
TGACTTTGGATTTAGGGTT
Found at i:7425093 original size:39 final size:40
Alignment explanation
Indices: 7425010--7425145 Score: 107
Period size: 39 Copynumber: 3.4 Consensus size: 40
7425000 TGAGATTTAA
* * *
7425010 AGTTTAACCTTTGATTGGGGGGTTGACTTTAGGATTTAGG
1 AGTTTGACCTTGGATTGGAGGGTTGACTTTAGGATTTAGG
* *
7425050 -GTTTGACCTTGGATTGGATGGTTGACTTT-GG-TGTTTGG
1 AGTTTGACCTTGGATTGGAGGGTTGACTTTAGGAT-TTAGG
* * ** * *
7425088 AGTTTGACTTTAAGATTTAAGGTTTGACCTTAGGATTTAGG
1 AGTTTGACCTT-GGATTGGAGGGTTGACTTTAGGATTTAGG
* *
7425129 GGTTTGACTTTAGGATT
1 AGTTTGACCTT-GGATT
7425146 TGGATTAGGG
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 1 0.01
38 6 0.08
39 34 0.45
40 13 0.17
41 21 0.28
42 1 0.01
ACGTcount: A:0.19, C:0.07, G:0.31, T:0.43
Consensus pattern (40 bp):
AGTTTGACCTTGGATTGGAGGGTTGACTTTAGGATTTAGG
Found at i:7425217 original size:20 final size:20
Alignment explanation
Indices: 7425185--7425270 Score: 70
Period size: 20 Copynumber: 4.2 Consensus size: 20
7425175 GGGGTTTGGG
7425185 TTAGG-TTTGGACTTTAAGGT
1 TTAGGATTT-GACTTTAAGGT
*
7425205 TTAGGATTTGACTTT-GGTGT
1 TTAGGATTTGACTTTAAG-GT
7425225 TTA-GAGTTTGACTTTTAAGGT
1 TTAGGA-TTTGAC-TTTAAGGT
* * **
7425246 TAAAGATTTGACTTTGGGGT
1 TTAGGATTTGACTTTAAGGT
7425266 TTAGG
1 TTAGG
7425271 GTAATTTAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
19 3 0.06
20 31 0.58
21 16 0.30
22 3 0.06
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (20 bp):
TTAGGATTTGACTTTAAGGT
Found at i:7425234 original size:41 final size:40
Alignment explanation
Indices: 7425185--7425270 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 40
7425175 GGGGTTTGGG
* * *
7425185 TTAGGTTTGGAC-TTTAAGGTTTAGGATTTGACTTTGGTGT
1 TTAGGTTT-GACTTTTAAGGTTAAAGATTTGACTTTGGGGT
7425225 TTAGAGTTTGACTTTTAAGGTTAAAGATTTGACTTTGGGGT
1 TTAG-GTTTGACTTTTAAGGTTAAAGATTTGACTTTGGGGT
7425266 TTAGG
1 TTAGG
7425271 GTAATTTAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
40 8 0.20
41 33 0.80
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (40 bp):
TTAGGTTTGACTTTTAAGGTTAAAGATTTGACTTTGGGGT
Done.