Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 31 of 138
Found at i:7425284 original size:17 final size:17
Alignment explanation
Indices: 7425262--7425322 Score: 79
Period size: 17 Copynumber: 3.6 Consensus size: 17
7425252 TTTGACTTTG
* *
7425262 GGGTTTAGGGTAATTTA
1 GGGTTTAAGGTATTTTA
*
7425279 GGGTTTAAGATATTTTA
1 GGGTTTAAGGTATTTTA
7425296 GGGTTTAAGGTATTTTA
1 GGGTTTAAGGTATTTTA
*
7425313 AGG-TTAAGGT
1 GGGTTTAAGGT
7425323 TTATAGTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
16 7 0.18
17 32 0.82
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (17 bp):
GGGTTTAAGGTATTTTA
Found at i:7425323 original size:23 final size:24
Alignment explanation
Indices: 7425297--7425341 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7425287 GATATTTTAG
7425297 GGTTTA-AGGTATTTTAAGGTTAA
1 GGTTTATAGGTATTTTAAGGTTAA
* *
7425320 GGTTTATAGTTTTTTTAAGGTT
1 GGTTTATAGGTATTTTAAGGTT
7425342 TGGTTTTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (24 bp):
GGTTTATAGGTATTTTAAGGTTAA
Found at i:7425346 original size:23 final size:23
Alignment explanation
Indices: 7425299--7425377 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
7425289 TATTTTAGGG
* * *
7425299 TTTAAGGTATTTTAAGGTTAAGGT
1 TTTAGGGTTTTTTAAGGTT-TGGT
*
7425323 TTATA-GTTTTTTTAAGGTTTGGT
1 TT-TAGGGTTTTTTAAGGTTTGGT
* * *
7425346 TTTAGGGTTTTTTAGGGTTTCGA
1 TTTAGGGTTTTTTAAGGTTTGGT
7425369 TTTAGGGTT
1 TTTAGGGTT
7425378 ATGGTTTAGG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.04
23 28 0.61
24 14 0.30
25 2 0.04
ACGTcount: A:0.19, C:0.01, G:0.27, T:0.53
Consensus pattern (23 bp):
TTTAGGGTTTTTTAAGGTTTGGT
Found at i:7425349 original size:24 final size:24
Alignment explanation
Indices: 7425308--7425358 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7425298 GTTTAAGGTA
*
7425308 TTTTAAGGTTAAGGTTTATAGTTT
1 TTTTAAGGTTAAGGTTTAGAGTTT
* *
7425332 TTTTAAGGTT-TGGTTTTAGGGTTT
1 TTTTAAGGTTAAGG-TTTAGAGTTT
7425356 TTT
1 TTT
7425359 AGGGTTTCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (24 bp):
TTTTAAGGTTAAGGTTTAGAGTTT
Found at i:7427658 original size:11 final size:11
Alignment explanation
Indices: 7427642--7427672 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
7427632 AGTTTTGACC
7427642 AGTTTAGACTA
1 AGTTTAGACTA
7427653 AGTTTAGACTA
1 AGTTTAGACTA
7427664 AGTTT-GACT
1 AGTTTAGACT
7427673 TTGTTTGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (11 bp):
AGTTTAGACTA
Found at i:7428105 original size:48 final size:48
Alignment explanation
Indices: 7427969--7428341 Score: 176
Period size: 48 Copynumber: 7.8 Consensus size: 48
7427959 GCTAAGAAAT
* * * * *
7427969 TTTAAAAATCTCATC-TTGAAAAGG-TTTATATAAACAAAGGTAAGGAAC
1 TTTAAAAATCTC-TCTTTAAAAAGGCTCT-TATAAACATAGGCAAAGAAC
* * * * * * * * *
7428017 TTT-ACAATTTCACGTTGAAAAGGCACTTATCAATACAGGCAAAGAAC
1 TTTAAAAATCTCTCTTTAAAAAGGCTCTTATAAACATAGGCAAAGAAC
*
7428064 TTTAAAAATCTCTCTTTAAAAAGGCTCTTACAAACATAGGCAGAA-AAC
1 TTTAAAAATCTCTCTTTAAAAAGGCTCTTATAAACATAGGCA-AAGAAC
* * **
7428112 TTTAAAAATCT-TAATTTGAAAAAGGCT-TTCATAAATATAGGCAGGGAAC
1 TTTAAAAATCTCT-CTTT-AAAAAGGCTCTT-ATAAACATAGGCAAAGAAC
* * * * * * * **
7428161 TTT-AAAAT-TACACATTGAAAAGGCTCCTATAAACTTTGGTAGGGAAC
1 TTTAAAAATCT-CTCTTTAAAAAGGCTCTTATAAACATAGGCAAAGAAC
** * * ***
7428208 TTTAAAAATCTCAATTT-GAAAGGACTCCTATAAACATAGGTGGAGAAC
1 TTTAAAAATCTCTCTTTAAAAAGG-CTCTTATAAACATAGGCAAAGAAC
* * * * *
7428256 TTTAAAAATCACAT-ATTGAAAAGGCTCGTATAAACATAGGC-AGGAAAC
1 TTTAAAAATCTC-TCTTTAAAAAGGCTCTTATAAACATAGGCAAAG-AAC
* *
7428304 TTTAAAAAT-TTTCTTTTGAAAAAGGCTCTTATGAACAT
1 TTTAAAAATCTCTC-TTT-AAAAAGGCTCTTATAAACAT
7428342 GGACAGGGAA
Statistics
Matches: 250, Mismatches: 55, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
46 2 0.01
47 67 0.27
48 130 0.52
49 51 0.20
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (48 bp):
TTTAAAAATCTCTCTTTAAAAAGGCTCTTATAAACATAGGCAAAGAAC
Found at i:7428205 original size:47 final size:47
Alignment explanation
Indices: 7428082--7428362 Score: 198
Period size: 48 Copynumber: 5.9 Consensus size: 47
7428072 TCTCTCTTTA
* * * ** *
7428082 AAAAGGCTCTTACAAACATAGGCAGAAAACTTTAAAAATCTTA-ATTTG
1 AAAAGGCTCCTATAAACATAGGTAGGGAACTTTAAAAA--TTACAATTG
* * *
7428130 AAAAAGGCT-TTCATAAATATAGGCAGGGAACTTT-AAAATTACACATTG
1 -AAAAGGCTCCT-ATAAACATAGGTAGGGAACTTTAAAAATTACA-ATTG
* *
7428178 AAAAGGCTCCTATAAACTTTGGTAGGGAACTTTAAAAATCT-CAATTTG
1 AAAAGGCTCCTATAAACATAGGTAGGGAACTTTAAAAAT-TACAA-TTG
*
7428226 -AAAGGACTCCTATAAACATAGGT-GGAGAACTTTAAAAATCACATATTG
1 AAAAGG-CTCCTATAAACATAGGTAGG-GAACTTTAAAAATTACA-ATTG
* * * * **
7428274 AAAAGGCTCGTATAAACATAGGCAGGAAACTTTAAAAATTTTCTTTTG
1 AAAAGGCTCCTATAAACATAGGTAGGGAACTTTAAAAA-TTACAATTG
* * * *
7428322 AAAAAGGCTCTTATGAACAT-GGACAGGGAACTTTAGAAATT
1 -AAAAGGCTCCTATAAACATAGG-TAGGGAACTTTAAAAATT
7428363 TCCTTTTGAG
Statistics
Matches: 192, Mismatches: 24, Indels: 33
0.77 0.10 0.13
Matches are distributed among these distances:
46 3 0.02
47 35 0.18
48 86 0.45
49 68 0.35
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (47 bp):
AAAAGGCTCCTATAAACATAGGTAGGGAACTTTAAAAATTACAATTG
Found at i:7428209 original size:96 final size:96
Alignment explanation
Indices: 7428082--7428362 Score: 295
Period size: 96 Copynumber: 2.9 Consensus size: 96
7428072 TCTCTCTTTA
* * *
7428082 AAAAGGCTCTTACAAACATAGGCAGAAAACTTTAAAAATCTTAATTTGAAAAAGGCTTTCATAAA
1 AAAAGGCTCCTATAAACATAGGCAGGAAACTTTAAAAATCTTAATTTGAAAAAGGCTTTCATAAA
*
7428147 TATAGGCAGGGAACTTTAAAATTACACATTG
66 CATAGGCAGGGAACTTTAAAATTACACATTG
* * * * * *
7428178 AAAAGGCTCCTATAAACTTTGGTAGGGAACTTTAAAAATCTCAATTTG--AAAGGAC-TCCTATA
1 AAAAGGCTCCTATAAACATAGGCAGGAAACTTTAAAAATCTTAATTTGAAAAAGG-CTTTC-ATA
* * *
7428240 AACATAGG-TGGAGAACTTTAAAAATCACATATTG
64 AACATAGGCAGG-GAACTTT-AAAATTACACATTG
* * ** *
7428274 AAAAGGCTCGTATAAACATAGGCAGGAAACTTTAAAAATTTTCTTTTGAAAAAGGCTCTT-ATGA
1 AAAAGGCTCCTATAAACATAGGCAGGAAACTTTAAAAATCTTAATTTGAAAAAGGCT-TTCATAA
7428338 ACAT-GGACAGGGAACTTTAGAAATT
65 ACATAGG-CAGGGAACTTTA-AAATT
7428363 TCCTTTTGAG
Statistics
Matches: 148, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
94 9 0.06
95 18 0.12
96 94 0.64
97 19 0.13
98 7 0.05
99 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (96 bp):
AAAAGGCTCCTATAAACATAGGCAGGAAACTTTAAAAATCTTAATTTGAAAAAGGCTTTCATAAA
CATAGGCAGGGAACTTTAAAATTACACATTG
Found at i:7428354 original size:49 final size:50
Alignment explanation
Indices: 7428061--7428377 Score: 175
Period size: 48 Copynumber: 6.6 Consensus size: 50
7428051 ACAGGCAAAG
* * * *
7428061 AACTTTAAAAATCT-CTCTTT-A-AAAAGGCTCTTACAAACATAGGCAGAA
1 AACTTTAAAAATTTCCT-TTTGAGAAAAGGCTCGTATAAACATAGGCAGGA
** * * *
7428109 AACTTTAAAAATCTT-AATTTGA-AAAAGGCT-TTCATAAATATAGGCAGGG
1 AACTTTAAAAAT-TTCCTTTTGAGAAAAGGCTCGT-ATAAACATAGGCAGGA
* * * * * * *
7428158 AACTTT-AAAATTACAC-ATT--GAAAAGGCTCCTATAAACTTTGGTAGGG
1 AACTTTAAAAATTTC-CTTTTGAGAAAAGGCTCGTATAAACATAGGCAGGA
* ** * *
7428205 AACTTTAAAAATCTCAATTT--G-AAAGGACTCCTATAAACATAGG-TGGA
1 AACTTTAAAAATTTCCTTTTGAGAAAAGG-CTCGTATAAACATAGGCAGGA
** * *
7428252 GAACTTTAAAAATCACATATT--GAAAAGGCTCGTATAAACATAGGCAGGA
1 -AACTTTAAAAATTTCCTTTTGAGAAAAGGCTCGTATAAACATAGGCAGGA
* * * *
7428301 AACTTTAAAAATTTTCTTTTGA-AAAAGGCTCTTATGAACAT-GGACAGGG
1 AACTTTAAAAATTTCCTTTTGAGAAAAGGCTCGTATAAACATAGG-CAGGA
*
7428350 AACTTTAGAAATTTCCTTTTGAGAAAAG
1 AACTTTAAAAATTTCCTTTTGAGAAAAG
7428378 CTTGGGTTGT
Statistics
Matches: 214, Mismatches: 38, Indels: 32
0.75 0.13 0.11
Matches are distributed among these distances:
47 34 0.16
48 98 0.46
49 77 0.36
50 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (50 bp):
AACTTTAAAAATTTCCTTTTGAGAAAAGGCTCGTATAAACATAGGCAGGA
Found at i:7428942 original size:8 final size:7
Alignment explanation
Indices: 7428870--7428941 Score: 56
Period size: 7 Copynumber: 9.6 Consensus size: 7
7428860 TCCTCTATCA
7428870 TTTTCAT
1 TTTTCAT
7428877 TTTTCAT
1 TTTTCAT
7428884 TGTTT-AGT
1 T-TTTCA-T
*
7428892 TTATCAT
1 TTTTCAT
*
7428899 CCATTTCAT
1 --TTTTCAT
*
7428908 TCATTCATT
1 T-TTTCA-T
7428917 TTTTCAT
1 TTTTCAT
7428924 TTTTCAT
1 TTTTCAT
7428931 TTTTCAT
1 TTTTCAT
7428938 TTTT
1 TTTT
7428942 TTTCATTCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
7 31 0.60
8 14 0.27
9 7 0.13
ACGTcount: A:0.17, C:0.15, G:0.03, T:0.65
Consensus pattern (7 bp):
TTTTCAT
Found at i:7438360 original size:7 final size:7
Alignment explanation
Indices: 7438346--7438382 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
7438336 TTTTTATTAA
7438346 TATTTTT
1 TATTTTT
*
7438353 TGTTTTT
1 TATTTTT
7438360 TATTTTT
1 TATTTTT
7438367 TATTTTTT
1 TA-TTTTT
7438375 TATTTTT
1 TATTTTT
7438382 T
1 T
7438383 TATTGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:7438367 original size:9 final size:8
Alignment explanation
Indices: 7438355--7438386 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
7438345 ATATTTTTTG
7438355 TTTTTTA-
1 TTTTTTAT
7438362 TTTTTTAT
1 TTTTTTAT
7438370 TTTTTTAT
1 TTTTTTAT
7438378 TTTTTTAT
1 TTTTTTAT
7438386 T
1 T
7438387 GAAAATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTAT
Found at i:7438373 original size:15 final size:14
Alignment explanation
Indices: 7438346--7438382 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
7438336 TTTTTATTAA
7438346 TATTTTTTGTTTTT
1 TATTTTTTGTTTTT
*
7438360 TATTTTTTATTTTTT
1 TATTTTTT-GTTTTT
7438375 TATTTTTT
1 TATTTTTT
7438383 TATTGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (14 bp):
TATTTTTTGTTTTT
Found at i:7438528 original size:26 final size:25
Alignment explanation
Indices: 7438474--7438528 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7438464 TTCACCTAAG
*
7438474 AATTTTATAAAAATTTATCATTTGA
1 AATTTTATAAAAATTTATCATTGGA
*
7438499 AATTTT-TATAAATTTCATCATTGGA
1 AATTTTATAAAAATTT-ATCATTGGA
7438524 TAATT
1 -AATT
7438529 AATACTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 8 0.31
25 14 0.54
26 4 0.15
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (25 bp):
AATTTTATAAAAATTTATCATTGGA
Found at i:7438618 original size:12 final size:13
Alignment explanation
Indices: 7438600--7438646 Score: 62
Period size: 12 Copynumber: 3.8 Consensus size: 13
7438590 AAACAAACAC
7438600 ATAAATAAAAT-A
1 ATAAATAAAATAA
*
7438612 CTAAATAAAATAA
1 ATAAATAAAATAA
7438625 ATAAAT-AAATAA
1 ATAAATAAAATAA
*
7438637 ATAACTAAAA
1 ATAAATAAAA
7438647 ATGGCTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAATAAAATAA
Found at i:7438637 original size:21 final size:21
Alignment explanation
Indices: 7438600--7438640 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7438590 AAACAAACAC
*
7438600 ATAAATAAAATACTAAATAAA
1 ATAAATAAAATAATAAATAAA
7438621 ATAAAT-AAATAAATAAATAA
1 ATAAATAAAAT-AATAAATAA
7438641 CTAAAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
ATAAATAAAATAATAAATAAA
Found at i:7439408 original size:25 final size:24
Alignment explanation
Indices: 7439361--7439408 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7439351 CCCTCTAAAT
* *
7439361 TTCAAGTTCAATCCCTAAATTTAG
1 TTCAAATTCAAACCCTAAATTTAG
*
7439385 TTCAAATTCAAACACCTAACTTTA
1 TTCAAATTCAAAC-CCTAAATTTA
7439409 ATCAAACTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (24 bp):
TTCAAATTCAAACCCTAAATTTAG
Found at i:7439440 original size:8 final size:8
Alignment explanation
Indices: 7439427--7439468 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
7439417 CGACCACCTA
*
7439427 TTTTTTGT
1 TTTTTTAT
7439435 TTTTTTA-
1 TTTTTTAT
7439442 TTTTTTAT
1 TTTTTTAT
7439450 TTTTATTAAT
1 TTTT-TT-AT
7439460 TTTTTTAT
1 TTTTTTAT
7439468 T
1 T
7439469 AACAAAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
7 7 0.23
8 13 0.43
9 4 0.13
10 6 0.20
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.83
Consensus pattern (8 bp):
TTTTTTAT
Found at i:7439445 original size:15 final size:16
Alignment explanation
Indices: 7439425--7439464 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
7439415 CTCGACCACC
*
7439425 TATTTTTTGTTTTT-T
1 TATTTTTTATTTTTAT
7439440 TATTTTTTATTTTTAT
1 TATTTTTTATTTTTAT
7439456 TAATTTTTT
1 T-ATTTTTT
7439465 TATTAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.59
16 2 0.09
17 7 0.32
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (16 bp):
TATTTTTTATTTTTAT
Found at i:7439895 original size:44 final size:44
Alignment explanation
Indices: 7439625--7439883 Score: 265
Period size: 44 Copynumber: 5.9 Consensus size: 44
7439615 AACATAAAAA
** * * * *
7439625 CTCCTCTAAATAGAGGCTCCATGACTTTGAAAAAGTAAACAAAG
1 CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATAAAG
* * *
7439669 C-CCATCTATA-CAAAGG-TCCAACAACTTTGAAAAAATAAATCAAG
1 CTCC-TCTA-AGCAGAGGCT-CAACGACTTTGAAAAAATAAATAAAG
* * * *
7439713 CTCCTCTATGCAAAGGCTCAATGACTTAGTAAAAAATAAATAAAG
1 CTCCTCTAAGCAGAGGCTCAACGACTTTG-AAAAAATAAATAAAG
* * *
7439758 CTCCTCTAAGCAGAGGCTCAACGACTTTAAAAAAATAAACAAGG
1 CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATAAAG
* * *
7439802 CTCCTCTAAGAAGAAGCTCAACAACTTTGAAAAAATAAATAAAG
1 CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATAAAG
* *
7439846 TTCCTCTAAGTAGAGGCTCAACGACTTTG-AAAAATAAA
1 CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAA
7439884 ATAAGGTTCC
Statistics
Matches: 178, Mismatches: 30, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
43 12 0.07
44 124 0.70
45 42 0.24
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.22
Consensus pattern (44 bp):
CTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATAAAG
Found at i:7440521 original size:21 final size:21
Alignment explanation
Indices: 7440495--7440621 Score: 146
Period size: 21 Copynumber: 6.0 Consensus size: 21
7440485 GGTTTCACAT
7440495 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
*
7440516 CTCAAAGATTTTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
* *
7440538 TTCAAAAATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* * *
7440559 TTCAAAGACTCTTATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* * *
7440580 TTCAAAAATTCTCACTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
*
7440602 CTCAAAGATTCACATTTGAA
1 CTCAAAGATTCTCATTTGAA
7440622 GATTCACAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
21 54 0.61
22 35 0.39
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.35
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:7440549 original size:43 final size:43
Alignment explanation
Indices: 7440496--7440627 Score: 169
Period size: 43 Copynumber: 3.1 Consensus size: 43
7440486 GTTTCACATC
*
7440496 TCAAAGATTCTCATTTGAAACTCAAAGATTTTCATTTGAAAAT
1 TCAAAAATTCTCATTTGAAACTCAAAGATTTTCATTTGAAAAT
* *
7440539 TCAAAAATTCTCATTTGAAATTCAAAGACTCTT-ATTTG-AAAT
1 TCAAAAATTCTCATTTGAAACTCAAAGA-TTTTCATTTGAAAAT
* ** *
7440581 TCAAAAATTCTCACTTGAAAACTCAAAGATTCACATTTGAAGAT
1 TCAAAAATTCTCATTTG-AAACTCAAAGATTTTCATTTGAAAAT
7440625 TCA
1 TCA
7440628 CAATCTTGTC
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
42 21 0.28
43 46 0.61
44 9 0.12
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (43 bp):
TCAAAAATTCTCATTTGAAACTCAAAGATTTTCATTTGAAAAT
Found at i:7440576 original size:64 final size:65
Alignment explanation
Indices: 7440496--7440627 Score: 176
Period size: 64 Copynumber: 2.0 Consensus size: 65
7440486 GTTTCACATC
* * * * * *
7440496 TCAAAGATTCTCATTTGAAACTCAAAGATTTTCATTTGAAAATTCAAAAATTCTCATTTGAA-AT
1 TCAAAGACTCTCATTTGAAACTCAAAAATTCTCACTTGAAAACTCAAAAATTCACATTTGAAGAT
* * *
7440560 TCAAAGACTCTTATTTGAAATTCAAAAATTCTCACTTGAAAACTCAAAGATTCACATTTGAAGAT
1 TCAAAGACTCTCATTTGAAACTCAAAAATTCTCACTTGAAAACTCAAAAATTCACATTTGAAGAT
7440625 TCA
1 TCA
7440628 CAATCTTGTC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
64 53 0.91
65 5 0.09
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (65 bp):
TCAAAGACTCTCATTTGAAACTCAAAAATTCTCACTTGAAAACTCAAAAATTCACATTTGAAGAT
Found at i:7441862 original size:9 final size:8
Alignment explanation
Indices: 7441851--7442021 Score: 190
Period size: 8 Copynumber: 20.9 Consensus size: 8
7441841 TCCTTTTCTT
7441851 TTTTTTCA
1 TTTTTTCA
7441859 TTTTTTCA
1 TTTTTTCA
7441867 TTTTTTCA
1 TTTTTTCA
7441875 TTTTTTCA
1 TTTTTTCA
7441883 TTTTTTCA
1 TTTTTTCA
7441891 TTTTTT-A
1 TTTTTTCA
*
7441898 TTTTTTTAA
1 -TTTTTTCA
7441907 TTTTTT-A
1 TTTTTTCA
7441914 TTTTTTCA
1 TTTTTTCA
7441922 -TTTTTCA
1 TTTTTTCA
7441929 -TTTTTCA
1 TTTTTTCA
*
7441936 TTTTTTCTCT
1 -TTTTT-TCA
*
7441946 TTTTTTCCTT
1 TTTTTT-C-A
*
7441956 TTTTTTCTT
1 TTTTTTC-A
7441965 TTTTTTCA
1 TTTTTTCA
7441973 TTTTTTCA
1 TTTTTTCA
7441981 TTTTTTCA
1 TTTTTTCA
7441989 TCTTTTT-A
1 T-TTTTTCA
7441997 TTTTTTTCA
1 -TTTTTTCA
7442006 TTTTTTTCA
1 -TTTTTTCA
7442015 TTTTTTC
1 TTTTTTC
7442022 TTTATTTTTT
Statistics
Matches: 150, Mismatches: 2, Indels: 22
0.86 0.01 0.13
Matches are distributed among these distances:
7 22 0.15
8 82 0.55
9 37 0.25
10 9 0.06
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTCA
Found at i:7441871 original size:24 final size:23
Alignment explanation
Indices: 7441844--7442070 Score: 150
Period size: 24 Copynumber: 9.7 Consensus size: 23
7441834 TGAGTTCTCC
*
7441844 TTTTCTTTTTTTTCATTTTTTCA
1 TTTTTTTTTTTTTCATTTTTTCA
*
7441867 TTTTTTCATTTTTTCATTTTTTCA
1 TTTTTT-TTTTTTTCATTTTTTCA
*
7441891 TTTTTTATTTTTTTAATTTTTT-A
1 TTTTTT-TTTTTTTCATTTTTTCA
**
7441914 TTTTTTCATTTTTCA-TTTTTCA
1 TTTTTTTTTTTTTCATTTTTTCA
*
7441936 TTTTTTCTCTTTTTT--TCCTTTT--
1 TTTTTT-T-TTTTTTCAT-TTTTTCA
*
7441958 TTTTCTTTTTTTTCATTTTTTCA
1 TTTTTTTTTTTTTCATTTTTTCA
*
7441981 TTTTTTCATCTTTTT-ATTTTTTTCA
1 TTTTTT--TTTTTTTCA-TTTTTTCA
7442006 TTTTTTTCATTTTTTCTTTATTTTTTC-
1 TTTTTTT--TTTTTTC---ATTTTTTCA
*
7442033 -TTTATTTTTTTTC-TTTGTTTCA
1 TTTTTTTTTTTTTCATTT-TTTCA
**
7442055 TTATTGATTTTTTTCA
1 TT-TTTTTTTTTTTCA
7442071 CATATCAATC
Statistics
Matches: 161, Mismatches: 19, Indels: 46
0.71 0.08 0.20
Matches are distributed among these distances:
20 9 0.06
21 14 0.09
22 19 0.12
23 19 0.12
24 62 0.39
25 25 0.16
26 5 0.03
28 7 0.04
29 1 0.01
ACGTcount: A:0.11, C:0.11, G:0.01, T:0.78
Consensus pattern (23 bp):
TTTTTTTTTTTTTCATTTTTTCA
Found at i:7442029 original size:9 final size:8
Alignment explanation
Indices: 7441844--7442053 Score: 133
Period size: 8 Copynumber: 25.6 Consensus size: 8
7441834 TGAGTTCTCC
7441844 TTTTCTTTT
1 TTTTC-TTT
*
7441853 TTTTCATT
1 TTTTCTTT
*
7441861 TTTTCATT
1 TTTTCTTT
*
7441869 TTTTCATT
1 TTTTCTTT
*
7441877 TTTTCATT
1 TTTTCTTT
*
7441885 TTTTCATT
1 TTTTCTTT
*
7441893 TTTTATTT
1 TTTTCTTT
**
7441901 TTTTAATT
1 TTTTCTTT
*
7441909 TTTT-ATT
1 TTTTCTTT
*
7441916 TTTTC-AT
1 TTTTCTTT
*
7441923 TTTTC-AT
1 TTTTCTTT
7441930 TTTTCATTT
1 TTTTC-TTT
7441939 TTTCTCTTT
1 TTT-TCTTT
7441948 TTTTCCTTTT
1 TTTT-C-TTT
7441958 TTTTCTTTT
1 TTTTC-TTT
*
7441967 TTTTCATT
1 TTTTCTTT
*
7441975 TTTTCATT
1 TTTTCTTT
*
7441983 TTTTCATCT
1 TTTTC-TTT
*
7441992 TTTTATTT
1 TTTTCTTT
7442000 TTTTCATTT
1 TTTTC-TTT
*
7442009 TTTTCATT
1 TTTTCTTT
7442017 TTTTCTTT
1 TTTTCTTT
7442025 ATTTT-TTCT
1 -TTTTCTT-T
*
7442034 TTAT-TTT
1 TTTTCTTT
7442041 TTTTCTTT
1 TTTTCTTT
*
7442049 GTTTC
1 TTTTC
7442054 ATTATTGATT
Statistics
Matches: 173, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
7 24 0.14
8 96 0.55
9 44 0.25
10 9 0.05
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTCTTT
Found at i:7442040 original size:21 final size:21
Alignment explanation
Indices: 7441994--7442059 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
7441984 TTTCATCTTT
* *
7441994 TTATTTTTTTCATTTTTTTCA
1 TTATTTTTTTTATTTGTTTCA
* *
7442015 TT-TTTTCTTTATTT-TTTCT
1 TTATTTTTTTTATTTGTTTCA
*
7442034 TTATTTTTTTTCTTTGTTTCA
1 TTATTTTTTTTATTTGTTTCA
7442055 TTATT
1 TTATT
7442060 GATTTTTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
19 6 0.16
20 20 0.54
21 11 0.30
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.79
Consensus pattern (21 bp):
TTATTTTTTTTATTTGTTTCA
Found at i:7443593 original size:116 final size:116
Alignment explanation
Indices: 7443387--7443617 Score: 345
Period size: 116 Copynumber: 2.0 Consensus size: 116
7443377 AGAGTATTTC
** * * *
7443387 AATTTTTAATGGAATGATCAGCAATTCTATAATGGTAGTCATAGTAGGCTGTAGGATCATACCAC
1 AATTTTTAATAAAATGACCAGCAATTCTATAATGGTAGTCATAATAAGCTGTAGGATCATACCAC
* *
7443452 TTGGGATAGGGTGGCTTAAACGGCTCCAAATGACTGGGGGCAATCAAGTGT
66 TTAGGATAGGGTGACTTAAACGGCTCCAAATGACTGGGGGCAATCAAGTGT
* *
7443503 AATTTTTAATAAAATGACCAGTAATTCTATAATGGTAGTCATAATAAGCTGTATGATCATACCAC
1 AATTTTTAATAAAATGACCAGCAATTCTATAATGGTAGTCATAATAAGCTGTAGGATCATACCAC
** * *
7443568 TTAGGATAGGGTGACTTAAGTGGCTCTAGATGACTGGGGGCAATCAAGTG
66 TTAGGATAGGGTGACTTAAACGGCTCCAAATGACTGGGGGCAATCAAGTG
7443618 ATTATTATAG
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
116 102 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (116 bp):
AATTTTTAATAAAATGACCAGCAATTCTATAATGGTAGTCATAATAAGCTGTAGGATCATACCAC
TTAGGATAGGGTGACTTAAACGGCTCCAAATGACTGGGGGCAATCAAGTGT
Found at i:7446690 original size:18 final size:17
Alignment explanation
Indices: 7446669--7446727 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 17
7446659 TAATTACAAA
7446669 ATTTTTATTAATATTTTT
1 ATTTTTATT-ATATTTTT
*
7446687 ATTTTTATTTTTATTTTTT
1 ATTTTTA-TTATA-TTTTT
* *
7446706 ACTTTT-TTATTTTTTT
1 ATTTTTATTATATTTTT
7446722 ATTTTT
1 ATTTTT
7446728 TAATGAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 10 0.29
17 3 0.09
18 9 0.26
19 12 0.35
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (17 bp):
ATTTTTATTATATTTTT
Found at i:7446697 original size:5 final size:6
Alignment explanation
Indices: 7446669--7446727 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
7446659 TAATTACAAA
** * *
7446669 ATTTTT ATTAAT ATTTTT ATTTTT ATTTTT ATTTTTT ACTTTT -TTATT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A-TTTTT ATTTTT ATTTTT
7446717 -TTTTT ATTTTT
1 ATTTTT ATTTTT
7446728 TAATGAAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
5 7 0.16
6 30 0.70
7 6 0.14
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:7446711 original size:8 final size:7
Alignment explanation
Indices: 7446682--7446729 Score: 64
Period size: 8 Copynumber: 6.9 Consensus size: 7
7446672 TTTATTAATA
7446682 TTTTTA-
1 TTTTTAT
7446688 TTTTTA-
1 TTTTTAT
7446694 TTTTTAT
1 TTTTTAT
7446701 TTTTTACT
1 TTTTTA-T
7446709 TTTTTATT
1 TTTTTA-T
7446717 TTTTTAT
1 TTTTTAT
7446724 TTTTTA
1 TTTTTA
7446730 ATGAAAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
6 12 0.31
7 13 0.33
8 14 0.36
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTAT
Found at i:7446769 original size:21 final size:21
Alignment explanation
Indices: 7446745--7446788 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7446735 AATAAATATT
7446745 AATTT-AGATAAAATTTAGATA
1 AATTTGAGAT-AAATTTAGATA
*
7446766 AATTTGGGATAAATTTAGATA
1 AATTTGAGATAAATTTAGATA
7446787 AA
1 AA
7446789 ATTTCTCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (21 bp):
AATTTGAGATAAATTTAGATA
Found at i:7446792 original size:11 final size:10
Alignment explanation
Indices: 7446745--7446788 Score: 61
Period size: 11 Copynumber: 4.2 Consensus size: 10
7446735 AATAAATATT
7446745 AATTTAGATAA
1 AATTTAGAT-A
7446756 AATTTAGATA
1 AATTTAGATA
*
7446766 AATTTGGGATA
1 AATTT-AGATA
7446777 AATTTAGATA
1 AATTTAGATA
7446787 AA
1 AA
7446789 ATTTCTCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 12 0.40
11 18 0.60
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (10 bp):
AATTTAGATA
Found at i:7446980 original size:21 final size:21
Alignment explanation
Indices: 7446941--7446980 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7446931 AAATAAACAC
*
7446941 ATAAATAAAATACTAAAATAA
1 ATAAATAAAATAATAAAATAA
7446962 ATAAATAAAA-AATAGAAAT
1 ATAAATAAAATAATA-AAAT
7446981 GGCTCGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
ATAAATAAAATAATAAAATAA
Found at i:7448880 original size:17 final size:17
Alignment explanation
Indices: 7448843--7448881 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7448833 TTCAAGCAAT
*
7448843 TTTTTTTCATTTTTTTA
1 TTTTTTTCATTTTTATA
*
7448860 TTTTTTTCATTTTTATC
1 TTTTTTTCATTTTTATA
7448877 TTTTT
1 TTTTT
7448882 GTCTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTCATTTTTATA
Found at i:7448899 original size:8 final size:9
Alignment explanation
Indices: 7448843--7448899 Score: 57
Period size: 8 Copynumber: 6.6 Consensus size: 9
7448833 TTCAAGCAAT
7448843 TTTTTTTCA
1 TTTTTTTCA
7448852 TTTTTTT-A
1 TTTTTTTCA
7448860 TTTTTTTCA
1 TTTTTTTCA
*
7448869 TTTTTATC-
1 TTTTTTTCA
* *
7448877 TTTTTGTCT
1 TTTTTTTCA
7448886 TCTTTTTTC-
1 T-TTTTTTCA
7448895 TTTTT
1 TTTTT
7448900 GTTAAACACA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
8 19 0.45
9 17 0.40
10 6 0.14
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.81
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:7450204 original size:27 final size:27
Alignment explanation
Indices: 7450174--7450226 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7450164 ATATTTAGGT
7450174 AAAGCTTCAAAAATATCTCTAACTTAG
1 AAAGCTTCAAAAATATCTCTAACTTAG
7450201 AAAGCTTCAAAAATATCTCTAACTTA
1 AAAGCTTCAAAAATATCTCTAACTTA
7450227 AAAATTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (27 bp):
AAAGCTTCAAAAATATCTCTAACTTAG
Found at i:7450746 original size:49 final size:49
Alignment explanation
Indices: 7450649--7450763 Score: 124
Period size: 49 Copynumber: 2.3 Consensus size: 49
7450639 ACTATGTTAA
* * * **
7450649 GTTTGGGATTTGGTTTAGGTTTTAGGATTAGTTTGGCATCTAGGTTAGG
1 GTTTGTGATTTGGTTTAAGATTTAGGATTAGTTTGGCATCTAAATTAGG
* * * **
7450698 TTTTAG-GGTTTGGTTTAAGATTTAGGGTTAGTTTGGGGTCTAAATTAGG
1 GTTT-GTGATTTGGTTTAAGATTTAGGATTAGTTTGGCATCTAAATTAGG
7450747 GTTTGTGATTTGGTTTA
1 GTTTGTGATTTGGTTTA
7450764 GGGTTTAAGG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.02
49 51 0.96
50 1 0.02
ACGTcount: A:0.17, C:0.03, G:0.33, T:0.47
Consensus pattern (49 bp):
GTTTGTGATTTGGTTTAAGATTTAGGATTAGTTTGGCATCTAAATTAGG
Found at i:7450803 original size:21 final size:21
Alignment explanation
Indices: 7450764--7450808 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7450754 ATTTGGTTTA
**
7450764 GGGTTTAAGGTTTGGGGTTAG
1 GGGTTTAAGGTTTAAGGTTAG
*
7450785 GGGTTTAAGGTTTAAGGTTTG
1 GGGTTTAAGGTTTAAGGTTAG
7450806 GGG
1 GGG
7450809 GTTTTGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (21 bp):
GGGTTTAAGGTTTAAGGTTAG
Found at i:7452550 original size:143 final size:144
Alignment explanation
Indices: 7452279--7452611 Score: 345
Period size: 143 Copynumber: 2.3 Consensus size: 144
7452269 CCTAGATAAG
** *
7452279 GTCAAATTACGAAAATATCTCTAAAAGATATTTTAGTAATTTCATACATTTCGAGGTGTGATCAA
1 GTCAAATTACGAAAATATCTCTAAAAGATATTTTAGTAATTTCATACATTTCGAGGTGCAAGCAA
* * *
7452344 GGTTTTTAATGCACTAAAAATCATAAAGTAATATAAAACCATAATCTGAAACATTTCATAAAAAA
66 GGTTTTTAATGCACCAAAAATCATAAAGTAATATAAAACAATAATCTGAAACATTTCACAAAAAA
7452409 AAGATCTCGAAAAA
131 AAGATCTCGAAAAA
* * * *
7452423 GTCAAATTACGAAAATATCTCT-AAGGGTATTTTGGTAATTTCATACTTTTC-ACGGTGCAAGCA
1 GTCAAATTACGAAAATATCTCTAAAAGATATTTTAGTAATTTCATACATTTCGA-GGTGCAAGCA
** * * * * *
7452486 AGGTTTTTAATGTGCCAAAAATCATGAAA-TAATATAAAATAATGATCT-AGAGCTTTTCGCAAA
65 AGGTTTTTAATGCACCAAAAATCAT-AAAGTAATATAAAACAATAATCTGA-AACATTTCACAAA
** * * *
7452549 AATCTA-ACCACGAGAAA
128 AA-AAAGATCTCGAAAAA
* * * * *
7452566 GTTAATTTACAAAAATA-CCCTTAAAGATATTTTAGTAATTTCATAC
1 GTCAAATTACGAAAATATCTCTAAAAGATATTTTAGTAATTTCATAC
7452612 CTTTAATGTA
Statistics
Matches: 155, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
142 5 0.03
143 124 0.80
144 26 0.17
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (144 bp):
GTCAAATTACGAAAATATCTCTAAAAGATATTTTAGTAATTTCATACATTTCGAGGTGCAAGCAA
GGTTTTTAATGCACCAAAAATCATAAAGTAATATAAAACAATAATCTGAAACATTTCACAAAAAA
AAGATCTCGAAAAA
Found at i:7453883 original size:144 final size:144
Alignment explanation
Indices: 7453500--7453900 Score: 380
Period size: 144 Copynumber: 2.8 Consensus size: 144
7453490 TTTTGAGCTA
* * * * * *
7453500 CAATCAAAGTTTTCAAAACATTAAAATTCATGAAATAATATTAAAATATGATTTAGAG-CTTGAC
1 CAATCAAATTTTTCAATACATCAAAATTCATGAAATAATATTAAAATATGATATAAAGTCTT-TC
* * * * *
7453564 ACGAAAAATTGAAATCAAGAGAAGGTTAAATTACGAAAATACCCCCAAAAGGTATTTTTGTAATT
65 ACGAAAAATTGACATCAA-A-AAGGTTAAATTATGAAAATACCCCTAAAAAGTATTTTGGTAATT
*
7453629 TCATCTTTTCTAAGATG
128 TCAACTTTTCTAAGATG
* * * * * * *
7453646 CAATCAAGATTTTT-AATGCATCAAAATTCATGGAATAATATCAGAATACGATCTGAAACT-TTT
1 CAATCAA-ATTTTTCAATACATCAAAATTCATGAAATAATATTAAAATATGATAT-AAAGTCTTT
*** ** * * *
7453709 CGTAAAAAATCAACCTCAAGAAGGTTAAATTATAAAAATACCCCTAAAAAGTATTTTGGTAATTT
64 CACGAAAAATTGACATCAAAAAGGTTAAATTATGAAAATACCCCTAAAAAGTATTTTGGTAATTT
*
7453774 TAACATTTT-TGAAG-TG
129 CAAC-TTTTCT-AAGATG
* *
7453790 CAATCAAATTTTTCATTACATCAAAATTCATAAAATAATATTAAAATATGATATAAAGTCTTTCA
1 CAATCAAATTTTTCAATACATCAAAATTCATGAAATAATATTAAAATATGATATAAAGTCTTTCA
* * ** * *
7453855 CGAAAAATTGACTTTAAAAAAATCAAATTATGAAAATATCCCTAAA
66 CGAAAAATTGACATCAAAAAGGTTAAATTATGAAAATACCCCTAAA
7453901 TAACATTTTT
Statistics
Matches: 199, Mismatches: 49, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
143 10 0.05
144 122 0.61
145 7 0.04
146 51 0.26
147 9 0.05
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (144 bp):
CAATCAAATTTTTCAATACATCAAAATTCATGAAATAATATTAAAATATGATATAAAGTCTTTCA
CGAAAAATTGACATCAAAAAGGTTAAATTATGAAAATACCCCTAAAAAGTATTTTGGTAATTTCA
ACTTTTCTAAGATG
Found at i:7454259 original size:71 final size:71
Alignment explanation
Indices: 7454181--7454322 Score: 266
Period size: 71 Copynumber: 2.0 Consensus size: 71
7454171 TAAAATATAT
* *
7454181 TCAAATAAAATTAAATATCTATAATTACAAATAACAAATATTATCCACACTATCACAAGTTCCCA
1 TCAAATAAAATTAAATATCTATAATTACAAATAACAAAAATTATCCAAACTATCACAAGTTCCCA
7454246 ACTGCC
66 ACTGCC
7454252 TCAAATAAAATTAAATATCTATAATTACAAATAACAAAAATTATCCAAACTATCACAAGTTCCCA
1 TCAAATAAAATTAAATATCTATAATTACAAATAACAAAAATTATCCAAACTATCACAAGTTCCCA
7454317 ACTGCC
66 ACTGCC
7454323 ATTCAACACT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.48, C:0.22, G:0.03, T:0.27
Consensus pattern (71 bp):
TCAAATAAAATTAAATATCTATAATTACAAATAACAAAAATTATCCAAACTATCACAAGTTCCCA
ACTGCC
Found at i:7454768 original size:24 final size:24
Alignment explanation
Indices: 7454721--7454768 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7454711 TAAAATTAAT
* * *
7454721 ATTTGATATATTATTAGTATATAA
1 ATTTGATAAATTATTAATAAATAA
*
7454745 ATTTTATAAATTATTAATAAATAA
1 ATTTGATAAATTATTAATAAATAA
7454769 TATCATCTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
ATTTGATAAATTATTAATAAATAA
Found at i:7460809 original size:27 final size:27
Alignment explanation
Indices: 7460775--7460867 Score: 78
Period size: 32 Copynumber: 3.2 Consensus size: 27
7460765 ATTATTTAAA
7460775 ATTAATTATATTTAAAATAAATATTAT
1 ATTAATTATATTTAAAATAAATATTAT
**
7460802 ATTAATTAATAAATTTGTAATTTAAATATTAT
1 ATTAATT-AT--A-TT-TAAAATAAATATTAT
* * *
7460834 ATTAATAATTTTTAAAATTTAAATATTAC
1 ATTAATTATATTTAAAA--TAAATATTAT
7460863 ATTAA
1 ATTAA
7460868 ATATTATATT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
27 10 0.19
28 4 0.08
29 14 0.27
30 1 0.02
31 4 0.08
32 19 0.37
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (27 bp):
ATTAATTATATTTAAAATAAATATTAT
Found at i:7460866 original size:29 final size:27
Alignment explanation
Indices: 7460800--7460867 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 27
7460790 AATAAATATT
7460800 ATATTAATTAATAAATTTGTAATTTAA
1 ATATTAATTAATAAATTTGTAATTTAA
*
7460827 ATATTATATTAAT-AATTTTTAAAATTTAA
1 ATATTA-ATTAATAAATTTGT--AATTTAA
7460856 ATATTACATTAA
1 ATATTA-ATTAA
7460868 ATATTATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
27 12 0.33
28 6 0.17
29 18 0.50
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (27 bp):
ATATTAATTAATAAATTTGTAATTTAA
Found at i:7461131 original size:14 final size:13
Alignment explanation
Indices: 7461112--7461137 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7461102 TAATAATTTC
7461112 AAAAAAAATTCAT
1 AAAAAAAATTCAT
7461125 AAAAAAAATTCAT
1 AAAAAAAATTCAT
7461138 TATCTTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAAAATTCAT
Found at i:7462539 original size:10 final size:10
Alignment explanation
Indices: 7462524--7462581 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 10
7462514 AAAATTATAT
7462524 TTTTAATAAA
1 TTTTAATAAA
*
7462534 TTTTAATTAA
1 TTTTAATAAA
*
7462544 TTTTAA-AAT
1 TTTTAATAAA
*
7462553 TTTTATTAAA
1 TTTTAATAAA
**
7462563 --AGAATAAA
1 TTTTAATAAA
7462571 TTTTAATAAA
1 TTTTAATAAA
7462581 T
1 T
7462582 GATCAATCAC
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
8 5 0.14
9 6 0.17
10 24 0.69
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:7467131 original size:12 final size:12
Alignment explanation
Indices: 7467114--7467138 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7467104 TGATAGAAAA
7467114 TCTACTTTAGGG
1 TCTACTTTAGGG
7467126 TCTACTTTAGGG
1 TCTACTTTAGGG
7467138 T
1 T
7467139 ATTTATTCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TCTACTTTAGGG
Found at i:7471082 original size:24 final size:23
Alignment explanation
Indices: 7471054--7471104 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
7471044 TCATAAAAAT
7471054 AAATTTAAATGTATTTATTTTT-TA
1 AAATTTAAAT-T-TTTATTTTTATA
7471078 AAATTTAAATTTTTATTTTTATA
1 AAATTTAAATTTTTATTTTTATA
7471101 AAAT
1 AAAT
7471105 ATTATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 9 0.35
23 7 0.27
24 10 0.38
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
AAATTTAAATTTTTATTTTTATA
Found at i:7472095 original size:30 final size:32
Alignment explanation
Indices: 7472050--7472112 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
7472040 AGTAATTTTA
* * *
7472050 TTATATTTATCTTTTTA-ATATTTTAA-TATT
1 TTATATATATATTTTTAGATATTTCAATTATT
7472080 TTATATATATATTTTTAGATATTTCAATTATT
1 TTATATATATATTTTTAGATATTTCAATTATT
7472112 T
1 T
7472113 ATAACATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 15 0.54
31 8 0.29
32 5 0.18
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (32 bp):
TTATATATATATTTTTAGATATTTCAATTATT
Found at i:7473851 original size:21 final size:21
Alignment explanation
Indices: 7473827--7473874 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7473817 ATATATATAT
7473827 ATTTAAAATATCAAATATT-AA
1 ATTTAAAATATCAAA-ATTAAA
* *
7473848 ATTTTAAATATTAAAATTAAA
1 ATTTAAAATATCAAAATTAAA
7473869 ATTTAA
1 ATTTAA
7473875 CATTTTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTAAAATATCAAAATTAAA
Found at i:7473856 original size:14 final size:14
Alignment explanation
Indices: 7473839--7473881 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7473829 TTAAAATATC
7473839 AAATATTAAATTTT
1 AAATATTAAATTTT
* *
7473853 AAATATTAAAATTA
1 AAATATTAAATTTT
7473867 AAAT-TTAACATTTT
1 AAATATTAA-ATTTT
7473881 A
1 A
7473882 TCAATAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
AAATATTAAATTTT
Found at i:7474266 original size:29 final size:28
Alignment explanation
Indices: 7474200--7474273 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
7474190 CATAAGTATT
*
7474200 ATATTAATTAATAAA--TTTATAATTTAA
1 ATATTAATTAA-AAATTTTTAAAATTTAA
**
7474227 ATAACATATTAAAAATTTTTAAAATTTAA
1 ATATTA-ATTAAAAATTTTTAAAATTTAA
*
7474256 ATATTACATTAAATATTT
1 ATATTA-ATTAAAAATTT
7474274 CATTATACTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
27 7 0.19
28 5 0.14
29 25 0.68
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
ATATTAATTAAAAATTTTTAAAATTTAA
Found at i:7475037 original size:16 final size:16
Alignment explanation
Indices: 7475013--7475058 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
7475003 TTATATGTGG
7475013 ATTTTTTAATTGAATT
1 ATTTTTTAATTGAATT
* *
7475029 ATTTATTAATTAAATT
1 ATTTTTTAATTGAATT
7475045 ATTTTTTATATTGA
1 ATTTTTTA-ATTGA
7475059 TGTAATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 21 0.84
17 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (16 bp):
ATTTTTTAATTGAATT
Found at i:7475463 original size:5 final size:5
Alignment explanation
Indices: 7475453--7475481 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7475443 TCTTCTCTAC
7475453 TAAGG TAAGG TAAGG TAAGG TAAGG TAAG
1 TAAGG TAAGG TAAGG TAAGG TAAGG TAAG
7475482 CTAGAAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.21
Consensus pattern (5 bp):
TAAGG
Found at i:7495420 original size:25 final size:24
Alignment explanation
Indices: 7495390--7495439 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
7495380 TTACGTATTT
*
7495390 ATATTATATTTTATATAAAATTTAA
1 ATATTATAATTTATAT-AAATTTAA
* *
7495415 ATATTATAATTTGTATTAATTTAA
1 ATATTATAATTTATATAAATTTAA
7495439 A
1 A
7495440 AAACATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATATTATAATTTATATAAATTTAA
Found at i:7497819 original size:21 final size:24
Alignment explanation
Indices: 7497774--7497837 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 24
7497764 ATCCGATAAA
* *
7497774 TTTACTGGTATTT-TTTTATG-GT
1 TTTACTGGTATTTATTTTTTGTTT
7497796 TTTACT-G-ATTT-TTTTTTGTTT
1 TTTACTGGTATTTATTTTTTGTTT
*
7497817 TTTGCTGGTATTTATTTTTTG
1 TTTACTGGTATTTATTTTTTG
7497838 ATATTTTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 10 0.29
21 7 0.20
22 7 0.20
23 4 0.11
24 7 0.20
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.69
Consensus pattern (24 bp):
TTTACTGGTATTTATTTTTTGTTT
Found at i:7497931 original size:74 final size:75
Alignment explanation
Indices: 7497796--7497938 Score: 179
Period size: 74 Copynumber: 1.9 Consensus size: 75
7497786 TTTTTATGGT
* * * *
7497796 TTTACTGATTTTTTTTTGTTTTTTGCTGGTATTTATTTTTTGATATTTTCTTTGTATGATTATA-
1 TTTACTAATTTTTTTTTGTTTTTTGCTGGAATTTAATTGTTGATATTTTCTTTGTATGATTATAT
7497860 GGCAGATAAA
66 GGCAGATAAA
7497870 TTTACTAATTTTTTTTATG-TTTTTGCCT-GAATTTAATTGTTGATA-TTTCTTTGGTGA-GATT
1 TTTACTAATTTTTTTT-TGTTTTTTG-CTGGAATTTAATTGTTGATATTTTCTTT-GT-ATGATT
7497931 ATATGGCA
62 ATATGGCA
7497939 TTATTTATGG
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
73 7 0.12
74 44 0.73
75 9 0.15
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.57
Consensus pattern (75 bp):
TTTACTAATTTTTTTTTGTTTTTTGCTGGAATTTAATTGTTGATATTTTCTTTGTATGATTATAT
GGCAGATAAA
Found at i:7499279 original size:12 final size:12
Alignment explanation
Indices: 7499250--7499314 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
7499240 AAAGCCGAAG
* *
7499250 TTGAAACTAGAA
1 TTGAAACTGGAT
*
7499262 TGGAAACTGGAT
1 TTGAAACTGGAT
*
7499274 TTGAAATTGGAT
1 TTGAAACTGGAT
*
7499286 TTGTTAAAGCTAGAT
1 TTG--AAA-CTGGAT
7499301 TTGAAACTGGAT
1 TTGAAACTGGAT
7499313 TT
1 TT
7499315 AGAGTTTATG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
12 29 0.69
13 3 0.07
14 3 0.07
15 7 0.17
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (12 bp):
TTGAAACTGGAT
Found at i:7502066 original size:42 final size:41
Alignment explanation
Indices: 7502019--7502116 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 41
7502009 ATTTTTATAT
*
7502019 TTTCATTCCTTACTGCCTCA-CTTACATGTCAATTTTTTACCC
1 TTTCATTCC-TACTGCATCATCTT-CATGTCAATTTTTTACCC
* **
7502061 TTTCATTTCCTACCGCATCATCTTCATGTTGATTTTTTACCC
1 TTTCA-TTCCTACTGCATCATCTTCATGTCAATTTTTTACCC
7502103 TTTCATTCCATACT
1 TTTCATTCC-TACT
7502117 ACCTTAGCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
41 4 0.08
42 37 0.77
43 7 0.15
ACGTcount: A:0.18, C:0.30, G:0.05, T:0.47
Consensus pattern (41 bp):
TTTCATTCCTACTGCATCATCTTCATGTCAATTTTTTACCC
Found at i:7502351 original size:42 final size:42
Alignment explanation
Indices: 7502304--7502394 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
7502294 ATTCCTATCT
* *
7502304 TTTCATTCCTTACTGCCTCA-CTTACATGTCAATTTTTTACCC
1 TTTCATTCCCTACTGCATCATCTT-CATGTCAATTTTTTACCC
**
7502346 TTTCATTCCCTACTGCATCATCTTCATGTTGATTTTTTACCC
1 TTTCATTCCCTACTGCATCATCTTCATGTCAATTTTTTACCC
7502388 TTTCATT
1 TTTCATT
7502395 TCATACTACC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.18, C:0.29, G:0.05, T:0.48
Consensus pattern (42 bp):
TTTCATTCCCTACTGCATCATCTTCATGTCAATTTTTTACCC
Found at i:7502386 original size:285 final size:284
Alignment explanation
Indices: 7501864--7502432 Score: 1021
Period size: 285 Copynumber: 2.0 Consensus size: 284
7501854 TACCTAGCCA
* *
7501864 CATCTTCATTTTTACCCTTGCTGCCTTTAATGCCCCTACCACATCTTTATTTCCTACCCTTGCCT
1 CATCTTCATTTTTACCCTTGCTGCCCTTAACGCCCCTACCACATCTTTATTTCCTACCCTTGCCT
7501929 TAACATCATCTTCAATTCCTAACCTTGTTGCCTCAGCTACATCTTCATTCTCTACCCCTGATTCT
66 TAACATCATCTTCAATTCCTAACCTTGTTGCCTCAGCTACATCTTCATTCTCTACCCCTGATTCT
* **
7501994 TCAACCACCTCTTTAATTTTTATATTTTCATTCCTTACTGCCTCACTTACATGTCAATTTTTTAC
131 TCAACCACCTCTTCAATTCCTATATTTTCATTCCTTACTGCCTCACTTACATGTCAATTTTTTAC
*
7502059 CCTTTCATTTCCTACCGCATCATCTTCATGTTGATTTTTTACCCTTTCATTCCATACTACCTTAG
196 CCTTTCATTCCCTACCGCATCATCTTCATGTTGATTTTTTACCCTTTCATTCCATACTACCTTAG
7502124 CTACATCTTTCACTTCATGTCTTG
261 CTACATCTTTCACTTCATGTCTTG
*
7502148 CATCTTCATTTTCTACCCTTGTTGCCCTTAACGCCCCTACCACATCTTTATTTCCTACCCTTGCC
1 CATCTTCATTTT-TACCCTTGCTGCCCTTAACGCCCCTACCACATCTTTATTTCCTACCCTTGCC
*
7502213 TTAACATCATCTTCAATTTCTAACCTTGTTGCCTCAGCTACATCTTCATTCTCTACCCCTGATTC
65 TTAACATCATCTTCAATTCCTAACCTTGTTGCCTCAGCTACATCTTCATTCTCTACCCCTGATTC
* *
7502278 TTTAACCACCTCTTCAATTCCTATCTTTTCATTCCTTACTGCCTCACTTACATGTCAATTTTTTA
130 TTCAACCACCTCTTCAATTCCTATATTTTCATTCCTTACTGCCTCACTTACATGTCAATTTTTTA
* *
7502343 CCCTTTCATTCCCTACTGCATCATCTTCATGTTGATTTTTTACCCTTTCATTTCATACTACCTTA
195 CCCTTTCATTCCCTACCGCATCATCTTCATGTTGATTTTTTACCCTTTCATTCCATACTACCTTA
7502408 GCTACATCTTTCACTTCATGTCTTG
260 GCTACATCTTTCACTTCATGTCTTG
7502433 TTAATAGCTC
Statistics
Matches: 272, Mismatches: 12, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
284 12 0.04
285 260 0.96
ACGTcount: A:0.19, C:0.32, G:0.06, T:0.43
Consensus pattern (284 bp):
CATCTTCATTTTTACCCTTGCTGCCCTTAACGCCCCTACCACATCTTTATTTCCTACCCTTGCCT
TAACATCATCTTCAATTCCTAACCTTGTTGCCTCAGCTACATCTTCATTCTCTACCCCTGATTCT
TCAACCACCTCTTCAATTCCTATATTTTCATTCCTTACTGCCTCACTTACATGTCAATTTTTTAC
CCTTTCATTCCCTACCGCATCATCTTCATGTTGATTTTTTACCCTTTCATTCCATACTACCTTAG
CTACATCTTTCACTTCATGTCTTG
Found at i:7503647 original size:42 final size:42
Alignment explanation
Indices: 7503544--7503756 Score: 153
Period size: 42 Copynumber: 5.1 Consensus size: 42
7503534 AATATACCTA
* * * **
7503544 AACAGTAGAAAA-CTCTAACAATAAATTCAAGTAATTAAGAAC
1 AACAGTAGAAAACCT-TAACTATAATTTCGACCAATTAAGAAC
* * * *
7503586 AATAATAAAAAACCCTAACTATAATTTCGACCAATTAAGAAC
1 AACAGTAGAAAACCTTAACTATAATTTCGACCAATTAAGAAC
* * * *
7503628 AACAGTAGAAAATCTTAACTATTATTTCAACCAATTAAGAAT
1 AACAGTAGAAAACCTTAACTATAATTTCGACCAATTAAGAAC
* * * * * * *
7503670 AATAGCAGAAAACCTCAAATTTAAATTT-GAGCAATTAAGAAT
1 AACAGTAGAAAACCTTAACTAT-AATTTCGACCAATTAAGAAC
* * ** *
7503712 AATAGCAGAAAATTTTAACTATAAATTT-GAACAATTAAGAAC
1 AACAGTAGAAAACCTTAACTAT-AATTTCGACCAATTAAGAAC
7503754 AAC
1 AAC
7503757 TACAAGAAAA
Statistics
Matches: 135, Mismatches: 34, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
42 130 0.96
43 5 0.04
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (42 bp):
AACAGTAGAAAACCTTAACTATAATTTCGACCAATTAAGAAC
Found at i:7504301 original size:19 final size:19
Alignment explanation
Indices: 7504259--7504302 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7504249 TAAAAAAACT
* * *
7504259 AAATCAGTATGAATTTGTC
1 AAATCAGCATAAATTTGCC
7504278 AAATCAGCATAAATTTGCC
1 AAATCAGCATAAATTTGCC
*
7504297 TAATCA
1 AAATCA
7504303 ATTGTTTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
AAATCAGCATAAATTTGCC
Found at i:7506706 original size:21 final size:19
Alignment explanation
Indices: 7506653--7506706 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 19
7506643 AAGTTTATGA
7506653 TATATTTATATTT-AATATT
1 TATA-TTATATTTAAATATT
7506672 TATATCT-T-TTTAAATATT
1 TATAT-TATATTTAAATATT
7506690 TCATACTTATATTTAAA
1 T-ATA-TTATATTTAAA
7506707 GTAAAATACG
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
17 3 0.10
18 9 0.31
19 9 0.31
20 2 0.07
21 6 0.21
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTATATTTAAATATT
Found at i:7508019 original size:26 final size:26
Alignment explanation
Indices: 7507971--7508045 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 26
7507961 TTTAAAATTC
7507971 AAATTAAATT-ATGTATATAAAATGAGCTA
1 AAATTAAATTAAT-T-T-TAAAAT-AGCTA
* * **
7508000 AATTTGAA-TAATTTTAAAATATTTA
1 AAATTAAATTAATTTTAAAATAGCTA
7508025 AAATTAAATTAATTTTAAAAT
1 AAATTAAATTAATTTTAAAAT
7508046 TTAATAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 9 0.24
26 18 0.47
27 1 0.03
28 2 0.05
29 8 0.21
ACGTcount: A:0.52, C:0.01, G:0.05, T:0.41
Consensus pattern (26 bp):
AAATTAAATTAATTTTAAAATAGCTA
Found at i:7508053 original size:16 final size:16
Alignment explanation
Indices: 7508012--7508055 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7508002 TTTGAATAAT
7508012 TTTAA-AATATTTAAAA
1 TTTAATAAT-TTTAAAA
*
7508028 TTAAATTAATTTTAAAA
1 TTTAA-TAATTTTAAAA
7508045 TTTAATAATTT
1 TTTAATAATTT
7508056 GGGTGCAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 10 0.42
17 11 0.46
18 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAATAATTTTAAAA
Found at i:7513075 original size:28 final size:26
Alignment explanation
Indices: 7513044--7513118 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 26
7513034 TAATAAAAAA
7513044 TTTAATATGATAATAAATTTTAAAATTT
1 TTTAAT-TGATAATAAATTTT-AAATTT
* *
7513072 TTTAATGTGATATTTAAATTATAAATTT
1 TTTAAT-TGATA-ATAAATTTTAAATTT
* *
7513100 ATTAATTAAT-ATAAATTTT
1 TTTAATTGATAATAAATTTT
7513119 CCTACTCATT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 7 0.18
27 3 0.08
28 22 0.56
29 7 0.18
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (26 bp):
TTTAATTGATAATAAATTTTAAATTT
Found at i:7513222 original size:20 final size:19
Alignment explanation
Indices: 7513173--7513212 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7513163 ATAAATTTAT
* *
7513173 AATTCAAATATTATATTAA
1 AATTCAATTATCATATTAA
7513192 AATTCAATTATCATATTAA
1 AATTCAATTATCATATTAA
7513211 AA
1 AA
7513213 ATTTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTCAATTATCATATTAA
Found at i:7513538 original size:17 final size:16
Alignment explanation
Indices: 7513518--7513549 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7513508 TATAAATATG
7513518 AATTATAACACAATAAA
1 AATTATAACA-AATAAA
7513535 AATTATAACAAATAA
1 AATTATAACAAATAA
7513550 TTTTATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (16 bp):
AATTATAACAAATAAA
Found at i:7522046 original size:2 final size:2
Alignment explanation
Indices: 7522039--7522069 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7522029 TAAGGTCGTT
7522039 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7522070 GTATGTATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7524571 original size:26 final size:24
Alignment explanation
Indices: 7524549--7524600 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
7524539 AGAGAGAGGG
*
7524549 AAAT-AATGTGTAGTTATTAGAGA
1 AAATAAATCTGTAGTTATTAGAGA
*
7524572 TAATAAATCTGTAGTTATTAGAGA
1 AAATAAATCTGTAGTTATTAGAGA
*
7524596 CAATA
1 AAATA
7524601 TATAGAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.44, C:0.04, G:0.17, T:0.35
Consensus pattern (24 bp):
AAATAAATCTGTAGTTATTAGAGA
Found at i:7525168 original size:2 final size:2
Alignment explanation
Indices: 7525156--7525185 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7525146 ATATAACCCA
*
7525156 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7525186 TCAAATTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7531434 original size:19 final size:19
Alignment explanation
Indices: 7531410--7531450 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7531400 AAGCACTGAA
7531410 ACAAGGCTACTACTAGCCC
1 ACAAGGCTACTACTAGCCC
7531429 ACAAGGCTACTACTAGCCC
1 ACAAGGCTACTACTAGCCC
7531448 ACA
1 ACA
7531451 TTAAAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.37, G:0.15, T:0.15
Consensus pattern (19 bp):
ACAAGGCTACTACTAGCCC
Found at i:7532761 original size:13 final size:13
Alignment explanation
Indices: 7532743--7532767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7532733 AGGCTTGATC
7532743 ATAAAGAAAAAAA
1 ATAAAGAAAAAAA
7532756 ATAAAGAAAAAA
1 ATAAAGAAAAAA
7532768 GAAAGTGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
ATAAAGAAAAAAA
Found at i:7533225 original size:9 final size:8
Alignment explanation
Indices: 7533176--7533233 Score: 53
Period size: 9 Copynumber: 6.8 Consensus size: 8
7533166 GAAATGATGT
7533176 GAAAAAAA
1 GAAAAAAA
7533184 GTAAAAAAA
1 G-AAAAAAA
*
7533193 TAAAAAAA
1 GAAAAAAA
*
7533201 CAAAAGAACA
1 GAAAA-AA-A
*
7533211 AAAAAAAA
1 GAAAAAAA
7533219 GAGAAAAAA
1 GA-AAAAAA
7533228 GAAAAA
1 GAAAAA
7533234 CTTAAACTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 18 0.43
9 19 0.45
10 5 0.12
ACGTcount: A:0.83, C:0.03, G:0.10, T:0.03
Consensus pattern (8 bp):
GAAAAAAA
Found at i:7534942 original size:84 final size:86
Alignment explanation
Indices: 7534685--7535068 Score: 424
Period size: 84 Copynumber: 4.4 Consensus size: 86
7534675 AGAATAATTT
* * *
7534685 CATTTTATTTTTCAAAAGTTTCAAAGCTTCAGTTGTGGTGGAA-CATTTTACTTTTCCAAAG-TT
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG-GGAAGCATTTTATTTTTCAAAAGTTT
* *
7534748 CAAAACCTTTAGTTGTGGGGGAG
65 CAAAGCC-TTAGTTGTAGGGGAG
* * * * * *
7534771 CATTTTATTTTTCCAAAGTTCCAAAGTCTTAGTTGTGGGGGAGCATTTTA-TTGTCTAAAAGTTT
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGAAGCATTTTATTTTTC-AAAAGTTT
* * **
7534835 CAATGCCTCAGTTGTAGAAGAG
65 CAAAGCCTTAGTTGTAGGGGAG
* * *
7534857 CATTTTA-TTTTCAAAA-TTTCAAA-CCATCAGTTATAGGGAAGCATTTTATTTTTCAAAAGTTC
1 CATTTTATTTTTCAAAAGTTTCAAAGCC-TCAGTTGTGGGGAAGCATTTTATTTTTCAAAAGTTT
* *
7534919 CAAAGCCTTCGTTGCAGGGGAG
65 CAAAGCCTTAGTTGTAGGGGAG
*
7534941 CATTTTATTTTTCAAAAGTTCAAGTTCCAAAGCCTTAGTTGTGGGGAAGCATTTTATTTTTC-AA
1 CATTTTATTTTTCAAAAG-T----TT-CAAAGCCTCAGTTGTGGGGAAGCATTTTATTTTTCAAA
*
7535005 AGTTTCAAAGCCTTAGTTGTGGGGGAG
60 AGTTTCAAAGCCTTAGTTGTAGGGGAG
7535032 CATTTTA-TTTTCAAAAGTTTCAAAGCCTCAGTTGTGG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG
7535069 AGGACTATTT
Statistics
Matches: 247, Mismatches: 37, Indels: 30
0.79 0.12 0.10
Matches are distributed among these distances:
83 1 0.00
84 70 0.28
85 30 0.12
86 62 0.25
87 8 0.03
89 1 0.00
90 10 0.04
91 34 0.14
92 29 0.12
93 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (86 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGAAGCATTTTATTTTTCAAAAGTTTC
AAAGCCTTAGTTGTAGGGGAG
Found at i:7534970 original size:49 final size:47
Alignment explanation
Indices: 7534891--7535050 Score: 164
Period size: 49 Copynumber: 3.6 Consensus size: 47
7534881 CATCAGTTAT
* *
7534891 AGGGAAGCATTTTATTTTTC--AA---AAGTTCCAAAGCCTTCGTTG
1 AGGGGAGCATTTTATTTTTCAAAAGTTAAGTTCCAAAGCCTTAGTTG
7534933 CAGGGGAGCATTTTATTTTTCAAAAGTTCAAGTTCCAAAGCCTTAGTTG
1 -AGGGGAGCATTTTATTTTTCAAAAGTT-AAGTTCCAAAGCCTTAGTTG
*
7534982 TGGGGAAGCATTTTATTTTTC-AAAG-T---TT-CAAAGCCTTAGTTG
1 AGGGG-AGCATTTTATTTTTCAAAAGTTAAGTTCCAAAGCCTTAGTTG
*
7535024 TGGGGGAGCATTTTA-TTTTCAAAAGTT
1 -AGGGGAGCATTTTATTTTTCAAAAGTT
7535051 TCAAAGCCTC
Statistics
Matches: 103, Mismatches: 4, Indels: 20
0.81 0.03 0.16
Matches are distributed among these distances:
41 5 0.05
42 27 0.26
43 26 0.25
45 2 0.02
47 1 0.01
48 8 0.08
49 34 0.33
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (47 bp):
AGGGGAGCATTTTATTTTTCAAAAGTTAAGTTCCAAAGCCTTAGTTG
Found at i:7535079 original size:42 final size:42
Alignment explanation
Indices: 7534685--7535068 Score: 370
Period size: 43 Copynumber: 8.9 Consensus size: 42
7534675 AGAATAATTT
* *
7534685 CATTTTATTTTTCAAAAGTTTCAAAGCTTCAGTTGTGGTGGAA
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG-GGAG
* * * *
7534728 CATTTTACTTTTCCAAAG-TTCAAAACCTTTAGTTGTGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCC-TCAGTTGT-GGGGAG
* * * *
7534771 CATTTTATTTTTCCAAAGTTCCAAAGTCTTAGTTGTGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGT-GGGGAG
* * **
7534814 CATTTTA-TTGTCTAAAAGTTTCAATGCCTCAGTTGTAGAAGAG
1 CATTTTATTTTTC-AAAAGTTTCAAAGCCTCAGTTGT-GGGGAG
* *
7534857 CATTTTA-TTTTCAAAA-TTTCAAA-CCATCAGTTATAGGGAAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCC-TCAGTTGT-GGGGAG
* *
7534898 CATTTTATTTTTCAAAAGTTCCAAAGCCTTC-GTTGCAGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCC-TCAGTTG-TGGGGAG
*
7534941 CATTTTATTTTTCAAAAGTTCAAGTTCCAAAGCCTTAGTTGTGGGGAAG
1 CATTTTATTTTTCAAAAG-T----TT-CAAAGCCTCAGTTGTGGGG-AG
*
7534990 CATTTTATTTTTC-AAAGTTTCAAAGCCTTAGTTGTGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGT-GGGGAG
7535032 CATTTTA-TTTTCAAAAGTTTCAAAGCCTCAGTTGTGG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGG
7535069 AGGACTATTT
Statistics
Matches: 288, Mismatches: 34, Indels: 40
0.80 0.09 0.11
Matches are distributed among these distances:
40 2 0.01
41 31 0.11
42 69 0.24
43 136 0.47
44 13 0.05
47 1 0.00
48 10 0.03
49 26 0.09
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (42 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGGAG
Found at i:7536014 original size:20 final size:21
Alignment explanation
Indices: 7535971--7536185 Score: 133
Period size: 20 Copynumber: 10.4 Consensus size: 21
7535961 AATTGCATAT
*
7535971 TTTGCATGATTTATATATTATTA
1 TTTGCATGA-TTATATA-TGTTA
*
7535994 TTTGCATGATAATATAT-TTA
1 TTTGCATGATTATATATGTTA
* * *
7536014 TTTACAT-TTTTTATATTGTTA
1 TTTGCATGATTATATA-TGTTA
*
7536035 ATTGCATGATTATATAT-TTA
1 TTTGCATGATTATATATGTTA
7536055 TTTGCATGATTGATAT-TGTTA
1 TTTGCATGATT-ATATATGTTA
* **
7536076 ATTATATGATTATATAT-TTA
1 TTTGCATGATTATATATGTTA
* *
7536096 TTTGCATG-TTTTACATGGTTA
1 TTTGCATGATTATATAT-GTTA
* * *
7536117 ATTACATGATTAGATAT-TTA
1 TTTGCATGATTATATATGTTA
* * * *
7536137 ATTACATG-TTTTAGATTGTTA
1 TTTGCATGATTATATA-TGTTA
*
7536158 ATTGCATGATTATATAT-TTA
1 TTTGCATGATTATATATGTTA
*
7536178 ATTGCATG
1 TTTGCATG
7536186 TGTATTTGCA
Statistics
Matches: 151, Mismatches: 29, Indels: 27
0.73 0.14 0.13
Matches are distributed among these distances:
19 15 0.10
20 59 0.39
21 46 0.30
22 22 0.15
23 9 0.06
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.53
Consensus pattern (21 bp):
TTTGCATGATTATATATGTTA
Found at i:7536040 original size:41 final size:41
Alignment explanation
Indices: 7535975--7536186 Score: 244
Period size: 41 Copynumber: 5.1 Consensus size: 41
7535965 GCATATTTTG
* * *
7535975 CATGATTTATATATTATTATTTGCATGATAATATATTTATTTA
1 CATG-TTT-TATATTGTTAATTGCATGATTATATATTTATTTA
* *
7536018 CATTTTTTATATTGTTAATTGCATGATTATATATTTATTTG
1 CATGTTTTATATTGTTAATTGCATGATTATATATTTATTTA
* * ** *
7536059 CATGATTGATATTGTTAATTATATGATTATATATTTATTTG
1 CATGTTTTATATTGTTAATTGCATGATTATATATTTATTTA
* * * * *
7536100 CATGTTTTACATGGTTAATTACATGATTAGATATTTAATTA
1 CATGTTTTATATTGTTAATTGCATGATTATATATTTATTTA
* * *
7536141 CATGTTTTAGATTGTTAATTGCATGATTATATATTTAATTG
1 CATGTTTTATATTGTTAATTGCATGATTATATATTTATTTA
7536182 CATGT
1 CATGT
7536187 GTATTTGCAT
Statistics
Matches: 146, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
41 140 0.96
42 3 0.02
43 3 0.02
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.52
Consensus pattern (41 bp):
CATGTTTTATATTGTTAATTGCATGATTATATATTTATTTA
Found at i:7536540 original size:14 final size:14
Alignment explanation
Indices: 7536523--7536556 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7536513 TTATTATATA
*
7536523 TTTGCATGATGATT
1 TTTGCATGATAATT
7536537 TTTGCATGATAATT
1 TTTGCATGATAATT
*
7536551 ATTGCA
1 TTTGCA
7536557 CAGTATGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (14 bp):
TTTGCATGATAATT
Found at i:7536595 original size:8 final size:8
Alignment explanation
Indices: 7536579--7536612 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7536569 TTTAATATTT
*
7536579 ATTGTATG
1 ATTGCATG
7536587 ATTGCATG
1 ATTGCATG
7536595 ATTGCATG
1 ATTGCATG
*
7536603 ATTGCTTG
1 ATTGCATG
7536611 AT
1 AT
7536613 ATTCTTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.44
Consensus pattern (8 bp):
ATTGCATG
Found at i:7547331 original size:6 final size:6
Alignment explanation
Indices: 7547320--7547367 Score: 62
Period size: 6 Copynumber: 7.7 Consensus size: 6
7547310 TTGGTTTGGT
7547320 TTTTTG TTTTTG TTTTTG TTTTTG CTTTTTTG CTTTTT- TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG --TTTTTG -TTTTTG TTTTTG TTTT
7547368 CCTTTATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
5 5 0.13
6 22 0.58
7 5 0.13
8 6 0.16
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:7547343 original size:26 final size:25
Alignment explanation
Indices: 7547292--7547367 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 25
7547282 TCCTAAATTA
* *
7547292 TTTTTTGTTTTTTTTGGTT-TGGTTTGG
1 TTTTTTGTTTTTTTT--TTGT-TTTTGC
7547319 TTTTTTGTTTTTGTTTTTGTTTTTGC
1 TTTTTTGTTTTT-TTTTTGTTTTTGC
7547345 TTTTTTGCTTTTTTTTTTGTTTT
1 TTTTTTG-TTTTTTTTTTGTTTT
7547368 CCTTTATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 23 0.52
27 18 0.41
28 3 0.07
ACGTcount: A:0.00, C:0.03, G:0.17, T:0.80
Consensus pattern (25 bp):
TTTTTTGTTTTTTTTTTGTTTTTGC
Found at i:7547812 original size:33 final size:32
Alignment explanation
Indices: 7547764--7548083 Score: 188
Period size: 33 Copynumber: 9.8 Consensus size: 32
7547754 TTGGTGCCAT
* *
7547764 CTAAATTGAGCTTAAATTTGCATTAGGTACTAG
1 CTAAACTGAGCTTAAATTTTCATT-GGTACTAG
* * *
7547797 CTAAACTGAGTTTAAATTTTTATTGGCTACTAA
1 CTAAACTGAGCTTAAATTTTCATTGG-TACTAG
* * * * *
7547830 CTAAATTAAGTTTAAATTTTCATTGGGTGCCAG
1 CTAAACTGAGCTTAAATTTTCATT-GGTACTAG
* *
7547863 CTTAACTG-GACTTAAATTTTCATTGGT-GTCAG
1 CTAAACTGAG-CTTAAATTTTCATTGGTACT-AG
* * *
7547895 TTAGATTGAGCTTAAATTTTCATTGGGTACTAG
1 CTAAACTGAGCTTAAATTTTCATT-GGTACTAG
* * *
7547928 CTAATA-TGGGCTTAAATTTGCATGGGTGA-TAG
1 CTAA-ACTGAGCTTAAATTTTCATTGGT-ACTAG
* * * *
7547960 CTAAACT-AGGTTTAAATTTTCATTGAGGTGCCAA
1 CTAAACTGA-GCTTAAATTTTCATT--GGTACTAG
* *
7547994 CTAAATTGAGCTTAAA-TTTCATTGGTGCTAG
1 CTAAACTGAGCTTAAATTTTCATTGGTACTAG
* * * * *
7548025 ATAAACT-AGGCCTAAATTTTGATTGGGTGCAAG
1 CTAAACTGA-GCTTAAATTTTCATT-GGTACTAG
* *
7548058 CTAAATTGGGCTTAAATTTT-ATTGGT
1 CTAAACTGAGCTTAAATTTTCATTGGT
7548084 GCTAAATAAT
Statistics
Matches: 221, Mismatches: 47, Indels: 40
0.72 0.15 0.13
Matches are distributed among these distances:
30 1 0.00
31 21 0.10
32 58 0.26
33 120 0.54
34 20 0.09
35 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (32 bp):
CTAAACTGAGCTTAAATTTTCATTGGTACTAG
Found at i:7547942 original size:65 final size:65
Alignment explanation
Indices: 7547594--7548137 Score: 288
Period size: 65 Copynumber: 8.3 Consensus size: 65
7547584 TGGGCTTACA
* * * * ** ** * *
7547594 TGCCAACTAAATTGAGCTTAAATTTTCATAGGTG-CCAATTAACCTAGGCTTGAACTTTCATTGG
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTGGTGTCTAGCTAAATTA-GCTTAAATTTTCATTGG
7547658 G
65 G
* * * * * * * * *
7547659 TGCTAGCTAATTTGGGCATAAATTTTTATTGCATG-CCAACTAAACTAGACTTAAATTTT-TTTG
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTG-GTGTCTAGCTAAATTAG-CTTAAATTTTCATT-
7547722 GGG
63 GGG
* * * * * *
7547725 TGCCAGTTGAAATTAGGCTTAAA-GTTCATTTGGTG-CCATCTAAATTGAGCTTAAATTTGCATT
1 TGCCAGCT-AAATTGGGCTTAAATTTTCA-TTGGTGTCTAGCTAAATT-AGCTTAAATTTTCATT
*
7547788 AGG
63 GGG
* * * * * * * * *
7547791 TACTAGCTAAACTGAGTTTAAATTTTTATTGGCT-ACTAACTAAATTAAGTTTAAATTTTCATTG
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTGG-TGTCTAGCTAAATT-AGCTTAAATTTTCATTG
7547855 GG
64 GG
* * * * *
7547857 TGCCAGCTTAACTGGACTTAAATTTTCATTGGTGTC-AGTTAGATTGAGCTTAAATTTTCATTGG
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTGGTGTCTAGCTAAATT-AGCTTAAATTTTCATTGG
7547921 G
65 G
* * * * * * *
7547922 TACTAGCT-AATATGGGCTTAAATTTGCATGGGTG-ATAGCTAAACTAGGTTTAAATTTTCATTG
1 TGCCAGCTAAAT-TGGGCTTAAATTTTCATTGGTGTCTAGCTAAATTA-GCTTAAATTTTCATTG
7547985 AGG
64 -GG
* * * * * *
7547988 TGCCAACTAAATTGAGCTTAAA-TTTCATTGGTG-CTAGATAAACTAGGCCTAAATTTTGATTGG
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTGGTGTCTAGCTAAATTA-GCTTAAATTTTCATTGG
7548051 G
65 G
* ** * *
7548052 TGCAAGCTAAATTGGGCTTAAATTTT-ATTGGTG-CTAAAT-AATCTAGACTTAAAATTTCATTA
1 TGCCAGCTAAATTGGGCTTAAATTTTCATTGGTGTCTAGCTAAAT-TAG-CTTAAATTTTCATTG
**
7548114 TA
64 GG
* *
7548116 TGCCAACTAAACTGGGCTTAAA
1 TGCCAGCTAAATTGGGCTTAAA
7548138 ACTTGGGTAG
Statistics
Matches: 370, Mismatches: 90, Indels: 39
0.74 0.18 0.08
Matches are distributed among these distances:
63 3 0.01
64 68 0.18
65 148 0.40
66 130 0.35
67 21 0.06
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (65 bp):
TGCCAGCTAAATTGGGCTTAAATTTTCATTGGTGTCTAGCTAAATTAGCTTAAATTTTCATTGGG
Found at i:7548126 original size:64 final size:64
Alignment explanation
Indices: 7547934--7548137 Score: 185
Period size: 64 Copynumber: 3.2 Consensus size: 64
7547924 CTAGCTAATA
* * ** *** * *
7547934 TGGGCTTAAATTTGCATGGGTGATAGCTAAACTAGGTTTAAATTTTCATTGAGGTGCCAACTAAA
1 TGGGCTTAAATTT-CATTGGTGCTAAATAAACTAGACCTAAAATTTCATT-AGATGCCAACTAAA
7547999 T
64 T
* * * * * * *
7548000 TGAGCTTAAATTTCATTGGTGCTAGATAAACTAGGCCTAAATTTTGATTGGGTG-CAAGCTAAAT
1 TGGGCTTAAATTTCATTGGTGCTAAATAAACTAGACCTAAAATTTCATTAGATGCCAA-CTAAAT
* * * * *
7548064 TGGGCTTAAATTTTATTGGTGCTAAATAATCTAGACTTAAAATTTCATTATATGCCAACTAAAC
1 TGGGCTTAAATTTCATTGGTGCTAAATAAACTAGACCTAAAATTTCATTAGATGCCAACTAAAT
7548128 TGGGCTTAAA
1 TGGGCTTAAA
7548138 ACTTGGGTAG
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
63 3 0.03
64 68 0.59
65 33 0.28
66 12 0.10
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (64 bp):
TGGGCTTAAATTTCATTGGTGCTAAATAAACTAGACCTAAAATTTCATTAGATGCCAACTAAAT
Found at i:7550542 original size:4 final size:4
Alignment explanation
Indices: 7550533--7550560 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7550523 TGGCTACATA
7550533 AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG
7550561 CACAAATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:7554848 original size:21 final size:21
Alignment explanation
Indices: 7554824--7554870 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7554814 TTTATCTAGT
7554824 TTCATCACACCAACCACAGTA
1 TTCATCACACCAACCACAGTA
*
7554845 TTCATCACACCGACCACAGTA
1 TTCATCACACCAACCACAGTA
7554866 TTCAT
1 TTCAT
7554871 AACCTAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.23
Consensus pattern (21 bp):
TTCATCACACCAACCACAGTA
Found at i:7559382 original size:23 final size:21
Alignment explanation
Indices: 7559356--7559397 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
7559346 AAAATGAGTG
7559356 ATGATGCAAAATTTATTAATTTT
1 ATGAT-CAAAATTTA-TAATTTT
*
7559379 ATGATTAAAATTTATAATT
1 ATGATCAAAATTTATAATT
7559398 ACTTCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 8 0.44
23 5 0.28
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (21 bp):
ATGATCAAAATTTATAATTTT
Found at i:7559726 original size:3 final size:3
Alignment explanation
Indices: 7559718--7559791 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
7559708 GAACTATTTG
7559718 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7559766 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
7559792 CTAACACTTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7566574 original size:41 final size:42
Alignment explanation
Indices: 7566507--7566593 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 42
7566497 TTTTTGTTAC
* * *
7566507 TTATTTAATTTTATATTTATATATATT-ATATTAATAAAATTA
1 TTATTTAATCTTATATTTATAGATATTAAT-TTAATAAAAATA
7566549 TTATTTAATACTT-TATTTA-AGATATTAATTTAATAAAAATA
1 TTATTTAAT-CTTATATTTATAGATATTAATTTAATAAAAATA
7566590 TTAT
1 TTAT
7566594 ATTTATGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
41 21 0.52
42 17 0.43
43 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (42 bp):
TTATTTAATCTTATATTTATAGATATTAATTTAATAAAAATA
Found at i:7568817 original size:13 final size:13
Alignment explanation
Indices: 7568801--7568848 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
7568791 TCACATATAT
7568801 ATAAAAAATAAAA
1 ATAAAAAATAAAA
* * *
7568814 ATAAAAATTATAT
1 ATAAAAAATAAAA
7568827 AT-AAAAATAAAAA
1 ATAAAAAAT-AAAA
7568840 ATAAAAAAT
1 ATAAAAAAT
7568849 TGTATAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 5 0.19
13 16 0.59
14 6 0.22
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAAAAATAAAA
Found at i:7568832 original size:26 final size:26
Alignment explanation
Indices: 7568795--7568866 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
7568785 TTCAATTCAC
7568795 ATATATATAAAAAATAAAAATAAAAA
1 ATATATATAAAAAATAAAAATAAAAA
*
7568821 TTATATAT-AAAAATAAAAAATAAAAA
1 ATATATATAAAAAAT-AAAAATAAAAA
* *
7568847 AT-TGTATAAAAAGTAAAAAT
1 ATATATATAAAAAATAAAAAT
7568867 TAAGTTTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 16 0.40
26 24 0.60
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (26 bp):
ATATATATAAAAAATAAAAATAAAAA
Found at i:7568848 original size:7 final size:6
Alignment explanation
Indices: 7568804--7568846 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
7568794 CATATATATA
* *
7568804 AAAAAT AAAAAT AAAAATT ATATAT AAAAAT AAAAAAT AAAAA
1 AAAAAT AAAAAT AAAAA-T AAAAAT AAAAAT -AAAAAT AAAAA
7568847 ATTGTATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 21 0.68
7 10 0.32
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:7572999 original size:35 final size:35
Alignment explanation
Indices: 7572960--7573062 Score: 87
Period size: 35 Copynumber: 3.1 Consensus size: 35
7572950 TAACAAAAAT
7572960 AAATAAAATAATAAAAATTTAATTTTCATATTTAA
1 AAATAAAATAATAAAAATTTAATTTTCATATTTAA
* ***
7572995 AAAT---ATAA-AAGAA--TAATTATT-A-AAAAAA
1 AAATAAAATAATAAAAATTTAATT-TTCATATTTAA
*
7573023 TAAATAAAATAATAAAAATTTAATTATCATATTTAA
1 -AAATAAAATAATAAAAATTTAATTTTCATATTTAA
7573059 AAAT
1 AAAT
7573063 TATAATCTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 20
0.63 0.12 0.26
Matches are distributed among these distances:
28 3 0.06
29 10 0.20
30 2 0.04
31 4 0.08
32 8 0.16
33 4 0.08
34 1 0.02
35 14 0.29
36 3 0.06
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (35 bp):
AAATAAAATAATAAAAATTTAATTTTCATATTTAA
Found at i:7573020 original size:24 final size:24
Alignment explanation
Indices: 7572991--7573035 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
7572981 ATTTTCATAT
* *
7572991 TTAAAAATATAAA-AGAATAATTA
1 TTAAAAAAATAAATAAAATAATTA
7573014 TTAAAAAAATAAATAAAATAAT
1 TTAAAAAAATAAATAAAATAAT
7573036 AAAAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (24 bp):
TTAAAAAAATAAATAAAATAATTA
Found at i:7573067 original size:65 final size:65
Alignment explanation
Indices: 7572924--7573067 Score: 263
Period size: 64 Copynumber: 2.2 Consensus size: 65
7572914 TAGAATTTTA
*
7572924 ATTTAAAAATATAAAAGAATAATTATTAACAAAAATAAATAAAATAATAAAAATTTAATTTTCAT
1 ATTTAAAAATATAAAAGAATAATTATTAACAAAAATAAATAAAATAATAAAAATTTAATTATCAT
7572989 ATTTAAAAATATAAAAGAATAATTATTAA-AAAAATAAATAAAATAATAAAAATTTAATTATCAT
1 ATTTAAAAATATAAAAGAATAATTATTAACAAAAATAAATAAAATAATAAAAATTTAATTATCAT
7573053 ATTTAAAAATTATAA
1 ATTTAAAAA-TATAA
7573068 TCTATATCCA
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
64 43 0.56
65 34 0.44
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.34
Consensus pattern (65 bp):
ATTTAAAAATATAAAAGAATAATTATTAACAAAAATAAATAAAATAATAAAAATTTAATTATCAT
Found at i:7574659 original size:24 final size:24
Alignment explanation
Indices: 7574599--7574666 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
7574589 TGTATAAACA
*
7574599 ATATTTCATTCAAACATTCATATT
1 ATATTTCATTCAAACATTTATATT
* *
7574623 ATA-AT-A-T-GAACATTTATATT
1 ATATTTCATTCAAACATTTATATT
7574643 ATATTTCATTCAAACATTTATATT
1 ATATTTCATTCAAACATTTATATT
7574667 GTAGTTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
20 14 0.40
21 2 0.06
22 2 0.06
23 2 0.06
24 15 0.43
ACGTcount: A:0.40, C:0.12, G:0.01, T:0.47
Consensus pattern (24 bp):
ATATTTCATTCAAACATTTATATT
Found at i:7577064 original size:40 final size:40
Alignment explanation
Indices: 7577020--7577100 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
7577010 ATTAAAAGTT
*
7577020 TGTAGAATTCTTAAATTGATAAATCTATAATTGTGTAGTC
1 TGTAGAATTCTTAAATTGATAAATCTATAATTATGTAGTC
* *
7577060 TGTAGAATTCTTGAATTGATAAATCTATAGTTATGTAGTC
1 TGTAGAATTCTTAAATTGATAAATCTATAATTATGTAGTC
7577100 T
1 T
7577101 CCTGAATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.43
Consensus pattern (40 bp):
TGTAGAATTCTTAAATTGATAAATCTATAATTATGTAGTC
Found at i:7577979 original size:27 final size:27
Alignment explanation
Indices: 7577949--7578029 Score: 67
Period size: 27 Copynumber: 2.9 Consensus size: 27
7577939 TTGTACAAGG
7577949 AAAAATTGATACTTTCAACTTTTTTCC
1 AAAAATTGATACTTTCAACTTTTTTCC
* * *
7577976 AAAAA-T-ATTCTTTTGAAACTTTAATTTCG
1 AAAAATTGATAC-TTT-CAACTTT--TTTCC
7578005 AGGAAAATTGATACTTTCAACTTTT
1 A--AAAATTGATACTTTCAACTTTT
7578030 CCTAAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
25 3 0.07
26 4 0.10
27 11 0.27
29 6 0.15
31 10 0.24
32 4 0.10
33 3 0.07
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (27 bp):
AAAAATTGATACTTTCAACTTTTTTCC
Found at i:7578047 original size:67 final size:67
Alignment explanation
Indices: 7577983--7578227 Score: 212
Period size: 61 Copynumber: 3.8 Consensus size: 67
7577973 TCCAAAAATA
* * *
7577983 TTCTTTTGAAACTTTAATT-TCGAGGAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAAAA
1 TTCTTTTGAAAATTT-ATTCTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAAAA
7578047 AACC
65 AA-C
* * *
7578051 TTTTTTTGAAAATTTATTCTTAAGAAAAATTGATACTTTCAACTTTTCCT-------TAAAAAAA
1 TTCTTTTGAAAATTTATTCTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAAAAA
7578109 AC
66 AC
* * * * ** * *
7578111 TTTTTTTAAAAATTTATTCTTAAGGAAAATCAATACTTTCAACTTTTTCT------CAAAAAAAA
1 TTCTTTTGAAAATTTATTCTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAAAAA
*
7578170 TC
66 AC
* *
7578172 TTTTTTTGAAAATTTATTCTTAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAA
1 TTCTTTTGAAAATTTATTCTCAAGAAAAATTGATACTTTCAAC-TTTTCCTAAAAA
7578228 TATTTTTTGA
Statistics
Matches: 151, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
60 46 0.30
61 55 0.36
62 6 0.04
67 3 0.02
68 41 0.27
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (67 bp):
TTCTTTTGAAAATTTATTCTCAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAAAAA
AC
Found at i:7578355 original size:60 final size:60
Alignment explanation
Indices: 7578042--7578345 Score: 413
Period size: 60 Copynumber: 5.1 Consensus size: 60
7578032 TAAAAAAAAA
* *
7578042 AAAAAAACCTTTTTTTGAAAATTTATTCTTAAGAAAAATTGATACTTTCAAC-TTTTCCTT
1 AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTTCC-T
* * ** *
7578102 AAAAAAAACTTTTTTTAAAAATTTATTCTTAAGGAAAATCAATACTTTCAACTTTTTCTCA
1 AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTTC-CT
*
7578163 AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGAAAAATTGATACTTTCAACTTTTTCCT
1 AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTTCCT
* *
7578223 --AAAAAT-ATTTTTTGAAAACTTTTAATT-TCAAGGAAAATTGATACTTTCAAC-TTTTCCT
1 AAAAAAATCTTTTTTTGAAAA--TTT-ATTCTTAAGGAAAATTGATACTTTCAACTTTTTCCT
*
7578281 CAAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATCGATACTTTCAACTTTTTCCT
1 -AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTTCCT
7578342 AAAA
1 AAAA
7578346 TGTTTTTTTT
Statistics
Matches: 215, Mismatches: 18, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
57 11 0.05
58 13 0.06
59 28 0.13
60 80 0.37
61 71 0.33
62 12 0.06
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (60 bp):
AAAAAAATCTTTTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTTCCT
Found at i:7578400 original size:20 final size:20
Alignment explanation
Indices: 7578374--7578464 Score: 77
Period size: 20 Copynumber: 4.6 Consensus size: 20
7578364 TAAAGAAAAT
7578374 AAAATAAAT-AATAATAATA
1 AAAATAAATAAATAATAATA
*
7578393 ATAAATAAATGAA-AATAAATA
1 A-AAATAAATAAATAAT-AATA
*
7578414 AAAA-AAATCCTAAT-ATAATA
1 AAAATAAAT--AAATAATAATA
7578434 ATAAATAAATAAATAA-AATA
1 A-AAATAAATAAATAATAATA
7578454 AAAAT-AATAAA
1 AAAATAAATAAA
7578465 AAGAAACAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
18 6 0.10
19 9 0.15
20 27 0.44
21 15 0.25
22 4 0.07
ACGTcount: A:0.73, C:0.02, G:0.01, T:0.24
Consensus pattern (20 bp):
AAAATAAATAAATAATAATA
Found at i:7578749 original size:21 final size:22
Alignment explanation
Indices: 7578714--7578757 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
7578704 TTCAGCAGAA
*
7578714 CCCTTCTTCTCTTCTCTCTCTT
1 CCCTTCTTCTCTTCTCTCCCTT
7578736 CCCTTCTT-TCTTCTCTCCCTT
1 CCCTTCTTCTCTTCTCTCCCTT
7578757 C
1 C
7578758 ACTTTAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (22 bp):
CCCTTCTTCTCTTCTCTCCCTT
Found at i:7579321 original size:23 final size:21
Alignment explanation
Indices: 7579294--7579366 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 21
7579284 AAAAAAAAGG
*
7579294 AAAAAGAAAATCAGATAAATAA
1 AAAAAAAAAAT-AGATAAATAA
* *
7579316 AAAAAATATTAATAGATAATTAGA
1 AAAAAA-A-AAATAGATAAATA-A
7579340 AAAAAAAATAATAAGATAAATAA
1 AAAAAAAA-AAT-AGATAAATAA
7579363 AAAA
1 AAAA
7579367 TATTACAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
22 5 0.12
23 18 0.44
24 18 0.44
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.19
Consensus pattern (21 bp):
AAAAAAAAAATAGATAAATAA
Found at i:7579342 original size:24 final size:23
Alignment explanation
Indices: 7579306--7579366 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
7579296 AAAGAAAATC
*
7579306 AGATAAATAAAAAAAATATTAAT-
1 AGATAAATAAAAAAAA-AATAATA
*
7579329 AGATAATTAGAAAAAAAAATAATA
1 AGATAAATA-AAAAAAAAATAATA
7579353 AGATAAATAAAAAA
1 AGATAAATAAAAAA
7579367 TATTACAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 18 0.55
24 15 0.45
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (23 bp):
AGATAAATAAAAAAAAAATAATA
Found at i:7579393 original size:14 final size:15
Alignment explanation
Indices: 7579376--7579567 Score: 51
Period size: 16 Copynumber: 12.5 Consensus size: 15
7579366 ATATTACAAG
7579376 ATAAATAAATA-AT-A
1 ATAAAT-AATAGATAA
*
7579390 AT-AATAACAGATAA
1 ATAAATAATAGATAA
* *
7579404 ATTATAATATATAAATGA
1 A-TA-AATA-ATAGATAA
7579422 ATAAATAATA-ATAA
1 ATAAATAATAGATAA
* *
7579436 ATATATAACTAGCTAA
1 ATAAATAA-TAGATAA
*
7579452 ATAAAATACATATATAA
1 AT-AAATA-ATAGATAA
* *
7579469 AT-ATTAACAGA-AA
1 ATAAATAATAGATAA
* * * *
7579482 AGAAAGAAAAAGAAAA
1 ATAAA-TAATAGATAA
*
7579498 AAAAATAA-AGATATA
1 ATAAATAATAGATA-A
* *
7579513 TATATATATTA-ATAA
1 -ATAAATAATAGATAA
*
7579528 ATAGTAATAATAAATAA
1 ATA--AATAATAGATAA
7579545 ATAAATAAATA-ATAA
1 ATAAAT-AATAGATAA
*
7579560 ATACATAA
1 ATAAATAA
7579568 GATACAAAGA
Statistics
Matches: 132, Mismatches: 26, Indels: 40
0.67 0.13 0.20
Matches are distributed among these distances:
12 3 0.02
13 8 0.06
14 27 0.20
15 30 0.23
16 32 0.24
17 25 0.19
18 7 0.05
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (15 bp):
ATAAATAATAGATAA
Found at i:7579402 original size:45 final size:45
Alignment explanation
Indices: 7579302--7579435 Score: 118
Period size: 45 Copynumber: 3.0 Consensus size: 45
7579292 GGAAAAAGAA
* *
7579302 AATCAGATAAATAAAAAAAATATTAATAGATAATTAGAA-AA-AAAAAT
1 AATCAGATAAAT--AAAAAATATTAA-AGATAAATA-AATAATAATAAT
*
7579349 AATAAGATAAATAAAAAATATTACAAGATAAATAAATAATAATAAT
1 AATCAGATAAATAAAAAATATTA-AAGATAAATAAATAATAATAAT
* * *
7579395 AA-CAGATAAAT-TATAATA-TATAA-ATGAATAAATAATAATAA
1 AATCAGATAAATAAAAAATATTA-AAGATAAATAAATAATAATAA
7579436 ATATATAACT
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
42 17 0.22
43 4 0.05
44 7 0.09
45 29 0.38
46 8 0.11
47 11 0.14
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.26
Consensus pattern (45 bp):
AATCAGATAAATAAAAAATATTAAAGATAAATAAATAATAATAAT
Found at i:7579609 original size:6 final size:6
Alignment explanation
Indices: 7579591--7579653 Score: 69
Period size: 6 Copynumber: 10.5 Consensus size: 6
7579581 ATATATACAT
7579591 AAAATA TAAAATA AAAATA AAAATA AAAAT- --AATA AAAATA TAAAATA
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA
*
7579638 CAAAATA AAAGTA AAA
1 -AAAATA AAAATA AAA
7579654 TTGAGCTTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
3 3 0.06
6 29 0.58
7 18 0.36
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:7579626 original size:15 final size:16
Alignment explanation
Indices: 7579591--7579637 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 16
7579581 ATATATACAT
7579591 AAAATATAAAATAAAAATA
1 AAAATATAAAAT---AATA
7579610 AAAATA-AAAATAATA
1 AAAATATAAAATAATA
7579625 AAAATATAAAATA
1 AAAATATAAAATA
7579638 CAAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.37
16 6 0.22
18 5 0.19
19 6 0.22
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATATAAAATAATA
Found at i:7579635 original size:7 final size:7
Alignment explanation
Indices: 7579589--7579644 Score: 64
Period size: 7 Copynumber: 8.1 Consensus size: 7
7579579 AAATATATAC
7579589 ATAAAAT
1 ATAAAAT
7579596 ATAAAAT
1 ATAAAAT
7579603 A-AAAAT
1 ATAAAAT
7579609 A-AAAAT
1 ATAAAAT
7579615 A-AAAAT
1 ATAAAAT
7579621 AATAAAAAT
1 -AT-AAAAT
7579630 ATAAAAT
1 ATAAAAT
*
7579637 ACAAAAT
1 ATAAAAT
7579644 A
1 A
7579645 AAAGTAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
6 17 0.38
7 21 0.47
8 2 0.04
9 5 0.11
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (7 bp):
ATAAAAT
Found at i:7591097 original size:24 final size:22
Alignment explanation
Indices: 7591053--7591097 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
7591043 ATTATTTTTA
7591053 ATATAAATTATATTTTAATTAT
1 ATATAAATTATATTTTAATTAT
*
7591075 ATATAAATATAGTATTTTTATTA
1 ATATAAAT-TA-TATTTTAATTA
7591098 AGTTAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 2 0.10
24 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATAAATTATATTTTAATTAT
Found at i:7591107 original size:41 final size:39
Alignment explanation
Indices: 7591039--7591168 Score: 115
Period size: 41 Copynumber: 3.1 Consensus size: 39
7591029 AATATTCATA
7591039 AAATAT-TATTTTTAATATAAATT-ATATTTTAATTATATAT
1 AAATATATATTTTT-AT-TAAATTAATATTTTAATTA-ATAT
*
7591079 AAATATAGTATTTTTATTAAGTTAATATTTTAAATTAAAATATT
1 AAATATA-TATTTTTATTAAATTAATATTTT-AATT--AATA-T
7591123 AAATA-AT-TTTTTATTAATATTAATATATATATAATTAATAT
1 AAATATATATTTTTATTAA-ATTAATAT-T-T-TAATTAATAT
7591164 AAATA
1 AAATA
7591169 ATAAAAAATA
Statistics
Matches: 77, Mismatches: 2, Indels: 21
0.77 0.02 0.21
Matches are distributed among these distances:
40 11 0.14
41 25 0.32
42 23 0.30
43 5 0.06
44 12 0.16
45 1 0.01
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (39 bp):
AAATATATATTTTTATTAAATTAATATTTTAATTAATAT
Found at i:7591141 original size:21 final size:21
Alignment explanation
Indices: 7591117--7591171 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7591107 TTTAAATTAA
* * *
7591117 AATATTAAATAATTTTTTATT
1 AATATTAAATAATATATAATT
7591138 AATATT-AATATATATATAATT
1 AATATTAAATA-ATATATAATT
7591159 AATA-TAAATAATA
1 AATATTAAATAATA
7591172 AAAAATATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATATTAAATAATATATAATT
Found at i:7591169 original size:41 final size:42
Alignment explanation
Indices: 7591040--7591171 Score: 114
Period size: 44 Copynumber: 3.1 Consensus size: 42
7591030 ATATTCATAA
* *
7591040 AATATTATTT-TTAATATAAAT-TATATTTTAATTATATATAAAT
1 AATATT-TTTATTAATATTAATATATA-TATAATTA-ATATAAAT
* *
7591083 ATAGTATTTTTATTAA-GTTAATAT-TTTA-AATTAAAATATTAAAT
1 A-A-TATTTTTATTAATATTAATATATATATAATT--AATA-TAAAT
7591127 AAT-TTTTTATTAATATTAATATATATATAATTAATATAAAT
1 AATATTTTTATTAATATTAATATATATATAATTAATATAAAT
7591168 AATA
1 AATA
7591172 AAAAATATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 23
0.71 0.06 0.23
Matches are distributed among these distances:
41 18 0.25
42 16 0.22
43 9 0.12
44 20 0.28
45 9 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (42 bp):
AATATTTTTATTAATATTAATATATATATAATTAATATAAAT
Found at i:7593517 original size:5 final size:5
Alignment explanation
Indices: 7593507--7593532 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7593497 TCTTATACAC
7593507 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
7593533 AGAGAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:7594344 original size:21 final size:21
Alignment explanation
Indices: 7594318--7594362 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7594308 ATGATTTATG
7594318 CAATTAAGATGTTTCTGTATA
1 CAATTAAGATGTTTCTGTATA
* * *
7594339 CAATTAAGGTGTTTGTGTTTA
1 CAATTAAGATGTTTCTGTATA
7594360 CAA
1 CAA
7594363 ACGCATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (21 bp):
CAATTAAGATGTTTCTGTATA
Found at i:7594922 original size:25 final size:24
Alignment explanation
Indices: 7594872--7594925 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
7594862 TGTGTAATGT
*
7594872 ATATTGGTGTATTTACTGTATTGG
1 ATATTGGTGTATTTACTGTATGGG
* * *
7594896 ATATTGGTTGTTTTTATTGTGTGGG
1 ATATTGG-TGTATTTACTGTATGGG
7594921 ATATT
1 ATATT
7594926 TAGAGAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.54
Consensus pattern (24 bp):
ATATTGGTGTATTTACTGTATGGG
Done.