Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 32 of 138
Found at i:7597734 original size:14 final size:14
Alignment explanation
Indices: 7597712--7597743 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7597702 TATGATTAGG
*
7597712 TATTTGTTAATTTT
1 TATTCGTTAATTTT
7597726 TATTCGTTAATTTT
1 TATTCGTTAATTTT
7597740 TATT
1 TATT
7597744 GGTTTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (14 bp):
TATTCGTTAATTTT
Found at i:7610885 original size:21 final size:22
Alignment explanation
Indices: 7610858--7610904 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
7610848 TATGTAATGA
*
7610858 AATTTTTTATTTTATCAATT-TT
1 AATTTTTTATTTAATC-ATTCTT
7610880 AATTTTTTATTTAATCATTCTT
1 AATTTTTTATTTAATCATTCTT
7610902 AAT
1 AAT
7610905 AAAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (22 bp):
AATTTTTTATTTAATCATTCTT
Found at i:7611380 original size:22 final size:22
Alignment explanation
Indices: 7611339--7611380 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7611329 ACATAAAAAT
*
7611339 AATAAAAAATATGATTTTAAGA
1 AATAAAAAATATGATCTTAAGA
* *
7611361 AATAAAATATATTATCTTAA
1 AATAAAAAATATGATCTTAA
7611381 AGATAATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
AATAAAAAATATGATCTTAAGA
Found at i:7611761 original size:17 final size:18
Alignment explanation
Indices: 7611726--7611767 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
7611716 ATTTTTAATG
7611726 AATTCAAATAATTTGATTT
1 AATT-AAATAATTTGATTT
* *
7611745 ATTTAAAT-ATTTTATTT
1 AATTAAATAATTTGATTT
7611762 AATTAA
1 AATTAA
7611768 TTAAATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 4 0.20
19 3 0.15
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
AATTAAATAATTTGATTT
Found at i:7611795 original size:23 final size:22
Alignment explanation
Indices: 7611768--7611827 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
7611758 ATTTAATTAA
7611768 TTAAATAATATAAATAATTTATT
1 TTAAATAATATAAATAA-TTATT
7611791 TTAAATTACA-ATAAATAATTATT
1 TTAAA-TA-ATATAAATAATTATT
**
7611814 TTAGTTAATATAAA
1 TTAAATAATATAAA
7611828 ACACATCGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
21 1 0.03
22 7 0.22
23 13 0.41
24 10 0.31
25 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
TTAAATAATATAAATAATTATT
Found at i:7613066 original size:23 final size:23
Alignment explanation
Indices: 7613039--7613088 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
7613029 ATAATATTCT
7613039 TAAAAATT-A-AAATTAAATAAAA
1 TAAAAATTGATAAA-TAAATAAAA
*
7613061 TAAAAATTGATAAATAATTAAAA
1 TAAAAATTGATAAATAAATAAAA
7613084 TAAAA
1 TAAAA
7613089 TACTAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 8 0.32
23 14 0.56
24 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (23 bp):
TAAAAATTGATAAATAAATAAAA
Found at i:7613905 original size:21 final size:21
Alignment explanation
Indices: 7613875--7613956 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
7613865 ATTTTACTAT
7613875 TAAT-TTTAATATTATTATTA
1 TAATATTTAATATTATTATTA
* *
7613895 TAATATTTAATTTTATCATTA
1 TAATATTTAATATTATTATTA
* *
7613916 TAATAATTAATTTATTTTTATTA
1 TAATATTTAA--TATTATTATTA
* * *
7613939 TTATTTTTAATTTTATTA
1 TAATATTTAATATTATTA
7613957 AAATTAATTT
Statistics
Matches: 48, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.08
21 29 0.60
23 15 0.31
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATATTTAATATTATTATTA
Found at i:7614693 original size:123 final size:123
Alignment explanation
Indices: 7614473--7614714 Score: 421
Period size: 123 Copynumber: 2.0 Consensus size: 123
7614463 TATAGTTATA
7614473 TAGGACATGAAGTCGACAATTTAAGCGGAAAGGCACAAACCTAGAGAAAATAGGAACACCAAGTT
1 TAGGACATGAAGTCGACAATTTAAGCGGAAAGGCACAAACCTAGAGAAAATAGGAACACCAAGTT
**
7614538 AAAAAAAAAAAAAAGCTAGGCAGGACACGTTAGGGCAAAGGTACGCACGTTTCAAGTT
66 AAAAAAAAAAAAAAGCTAGGCAGGACACGTTAGGGCAAAGCAACGCACGTTTCAAGTT
*
7614596 TAGGACATGAAGTCGACAATTTAAGCGGAAAGGCACAAACCTAGAGAAAATAGGAAGACCAAGTT
1 TAGGACATGAAGTCGACAATTTAAGCGGAAAGGCACAAACCTAGAGAAAATAGGAACACCAAGTT
* * * *
7614661 AAAAAAAAAAAGAGGCTAGGCAGGACAGGTTAGGGCAAAGCAACGTACGTTTCA
66 AAAAAAAAAAAAAAGCTAGGCAGGACACGTTAGGGCAAAGCAACGCACGTTTCA
7614715 GGTTCTGAGG
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 112 1.00
ACGTcount: A:0.45, C:0.16, G:0.25, T:0.15
Consensus pattern (123 bp):
TAGGACATGAAGTCGACAATTTAAGCGGAAAGGCACAAACCTAGAGAAAATAGGAACACCAAGTT
AAAAAAAAAAAAAAGCTAGGCAGGACACGTTAGGGCAAAGCAACGCACGTTTCAAGTT
Found at i:7617291 original size:30 final size:30
Alignment explanation
Indices: 7617257--7617317 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
7617247 ATAATACGAA
7617257 AACAAAAAAATA-TATATAATTTAAAATTTT
1 AACAAAAAAATATTATA-AATTTAAAATTTT
* * *
7617287 AACAAAAATATATTTTAAATTTAATATTTT
1 AACAAAAAAATATTATAAATTTAAAATTTT
7617317 A
1 A
7617318 TCACAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (30 bp):
AACAAAAAAATATTATAAATTTAAAATTTT
Found at i:7624652 original size:21 final size:25
Alignment explanation
Indices: 7624576--7624646 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
7624566 AATTTAAAAA
* *
7624576 ATTT-TTAATATAATATTTGATTATAA
1 ATTTATTAAT-TAATATAT-ATTATAT
*
7624602 ATTTATTAATTAATATATATTATTT
1 ATTTATTAATTAATATATATTATAT
7624627 ATTTATT-ATTAATATA-ATTA
1 ATTTATTAATTAATATATATTA
7624647 ATTTTAAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 4 0.10
24 9 0.22
25 12 0.29
26 11 0.27
27 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (25 bp):
ATTTATTAATTAATATATATTATAT
Found at i:7625942 original size:15 final size:16
Alignment explanation
Indices: 7625916--7625946 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7625906 AAAAATAATA
7625916 TAAAAAATATATATTT
1 TAAAAAATATATATTT
7625932 TAAAAAA-ATATATTT
1 TAAAAAATATATATTT
7625947 CATATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAAAATATATATTT
Found at i:7626155 original size:7 final size:7
Alignment explanation
Indices: 7626143--7626172 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7626133 ATAAAAATTA
7626143 TTTTAAT
1 TTTTAAT
7626150 TTTTAAT
1 TTTTAAT
7626157 TTTTAATT
1 TTTTAA-T
7626165 TTTTAAT
1 TTTTAAT
7626172 T
1 T
7626173 ATGATACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTAAT
Found at i:7626162 original size:14 final size:15
Alignment explanation
Indices: 7626143--7626172 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7626133 ATAAAAATTA
7626143 TTTTAA-TTTTTAAT
1 TTTTAATTTTTTAAT
7626157 TTTTAATTTTTTAAT
1 TTTTAATTTTTTAAT
7626172 T
1 T
7626173 ATGATACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTAATTTTTTAAT
Found at i:7626394 original size:15 final size:15
Alignment explanation
Indices: 7626374--7626413 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7626364 ATAATTATGT
7626374 AATATAAATTAAATA
1 AATATAAATTAAATA
*
7626389 AATATATATTAAATA
1 AATATAAATTAAATA
*
7626404 CATATTAAAT
1 AATA-TAAAT
7626414 GAGTATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AATATAAATTAAATA
Found at i:7628542 original size:20 final size:21
Alignment explanation
Indices: 7628517--7628557 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7628507 ACTCTTTCTC
*
7628517 TCTTGATT-TTTTTAATTGAT
1 TCTTGATTGTTTCTAATTGAT
7628537 TCTTGATTGTTTCTAATTGAT
1 TCTTGATTGTTTCTAATTGAT
7628558 CATAATGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.20, C:0.07, G:0.12, T:0.61
Consensus pattern (21 bp):
TCTTGATTGTTTCTAATTGAT
Found at i:7629268 original size:35 final size:35
Alignment explanation
Indices: 7629198--7629333 Score: 89
Period size: 35 Copynumber: 3.8 Consensus size: 35
7629188 AATAAATTGA
* * * *
7629198 ATTCAAAGATTCACAAAA-CTCTAAGGTTCACAAAAG
1 ATTC-AAGATTCACAAAATATTTAAGATTC-GAAAAG
*
7629234 ATTCAAGATTCTA-AAAA-ATTTAATATTCGTAAAAG
1 ATTCAAGATTC-ACAAAATATTTAAGATTCG-AAAAG
* * * *
7629269 TTTAAAGATTCACAAAATATTTAAGATTTGCAAAG
1 ATTCAAGATTCACAAAATATTTAAGATTCGAAAAG
* * * *
7629304 ATTCAAAAATTTACAAAAGATTCAAGATTC
1 ATTC-AAGATTCACAAAATATTTAAGATTC
7629334 ACAAGGGATT
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
34 1 0.01
35 42 0.54
36 35 0.45
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (35 bp):
ATTCAAGATTCACAAAATATTTAAGATTCGAAAAG
Found at i:7629285 original size:18 final size:17
Alignment explanation
Indices: 7629203--7629296 Score: 64
Period size: 17 Copynumber: 5.4 Consensus size: 17
7629193 ATTGAATTCA
* *
7629203 AAGATTCACAAAACTCT
1 AAGATTCACAAAAGTTT
* *
7629220 AAGGTTCACAAAAGATTC
1 AAGATTCACAAAAG-TTT
*
7629238 AAGATTCTA-AAAAATTT
1 AAGATTC-ACAAAAGTTT
* **
7629255 AATATTCGTAAAAGTTT
1 AAGATTCACAAAAGTTT
*
7629272 AAAGATTCACAAAATATTT
1 -AAGATTCACAAAA-GTTT
7629291 AAGATT
1 AAGATT
7629297 TGCAAAGATT
Statistics
Matches: 58, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
17 27 0.47
18 27 0.47
19 4 0.07
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (17 bp):
AAGATTCACAAAAGTTT
Found at i:7629337 original size:18 final size:18
Alignment explanation
Indices: 7629198--7629350 Score: 84
Period size: 18 Copynumber: 8.6 Consensus size: 18
7629188 AATAAATTGA
7629198 ATTCAAAGATTCAC-AAA-
1 ATTC-AAGATTCACAAAAG
* *
7629215 ACTCTAAGGTTCACAAAAG
1 ATTC-AAGATTCACAAAAG
7629234 ATTCAAGATTCTA-AAAA-
1 ATTCAAGATTC-ACAAAAG
* * **
7629251 ATTTAATATTCGTAAAAG
1 ATTCAAGATTCACAAAAG
* * *
7629269 TTTAAAGATTCACAAAAT
1 ATTCAAGATTCACAAAAG
* **
7629287 ATTTAAGATTTGC-AAAG
1 ATTCAAGATTCACAAAAG
* *
7629304 ATTCAAAAATTTACAAAAG
1 ATTC-AAGATTCACAAAAG
**
7629323 ATTCAAGATTCACAAGGG
1 ATTCAAGATTCACAAAAG
7629341 ATT-AAGATTC
1 ATTCAAGATTC
7629351 GCAATTCGAA
Statistics
Matches: 103, Mismatches: 26, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
17 37 0.36
18 54 0.52
19 12 0.12
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.29
Consensus pattern (18 bp):
ATTCAAGATTCACAAAAG
Found at i:7629536 original size:18 final size:18
Alignment explanation
Indices: 7629494--7629752 Score: 145
Period size: 18 Copynumber: 14.4 Consensus size: 18
7629484 GAATTAAAAA
*
7629494 ATTCACAAAA-TTTC-AG
1 ATTCACAAAAGATTCAAG
7629510 ATTCACAAAAGATTCAAG
1 ATTCACAAAAGATTCAAG
**
7629528 ATTTTCAAAA-ATTCAAG
1 ATTCACAAAAGATTCAAG
* *
7629545 ATTCACAAAAGTTTAAAG
1 ATTCACAAAAGATTCAAG
* * *
7629563 ATTCGCAAGAGATTCTAG
1 ATTCACAAAAGATTCAAG
* * **
7629581 ATTTATAAGTGATTCAAG
1 ATTCACAAAAGATTCAAG
*
7629599 ACTTGCA-AAAAAATTTCAAAG
1 A-TT-CACAAAAGA-TTC-AAG
** *
7629620 ATTCGTAAACGATTCAAG
1 ATTCACAAAAGATTCAAG
7629638 ATTCAC-AAAGATTCAAAG
1 ATTCACAAAAGATTC-AAG
** *
7629656 ATTCGTAAAAGATTCAAA
1 ATTCACAAAAGATTCAAG
* *
7629674 ATTCATAAAA-ATTCAAA
1 ATTCACAAAAGATTCAAG
*** *
7629691 ATTTGTAAGAGATTCAAG
1 ATTCACAAAAGATTCAAG
** *
7629709 ATTCGTAAAA-ATTCAAAA
1 ATTCACAAAAGATTC-AAG
* *
7629727 ATTCACAAAAGTTTAAAG
1 ATTCACAAAAGATTCAAG
7629745 ATTCACAA
1 ATTCACAA
7629753 GTTTCAAGAT
Statistics
Matches: 187, Mismatches: 43, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
16 10 0.05
17 43 0.23
18 101 0.54
19 19 0.10
20 10 0.05
21 4 0.02
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (18 bp):
ATTCACAAAAGATTCAAG
Found at i:7629597 original size:288 final size:289
Alignment explanation
Indices: 7629058--7629585 Score: 792
Period size: 289 Copynumber: 1.8 Consensus size: 289
7629048 AAATTTAAAC
* * * * *
7629058 ATTCGCAATTTAAAATTCAAGACTTCTTAACTTGAAGTTCAGAAGTTCGTAATTAAATTCAAGGA
1 ATTCGCAATTCAAAATTCAAGACTTCTCAACTTGAAGTTCAAAAGTTCGCAATTAAATTCAAAGA
* *
7629123 TTCTTAATTTGAATTTAAAGGCTTGCAAAACATTCAAAGTTCTCCCAAAAGTTCAAAGGTTCACA
66 TTCTCAATTTGAATTTAAAGGCTTGCAAAACATTCAAAGTTCTCCCAAAAGTTCAAAGATTCACA
* * *
7629188 AATAAATTGAATTCAAAGATTCACAAAACTCTAAGGTTCACAAAAGATTCAAGATTCTAAAAAAT
131 AATAAATTGAATTAAAAAATTCACAAAACTCTAAGATTCACAAAAGATTCAAGATTCTAAAAAAT
* * ** * *
7629253 TTAATATTCGTAAAAGTTTAAAGATTCACAAAATATTTAAGATTTGCAAAGATTCAAAAATTTAC
196 TCAAGATTCACAAAAGTTTAAAGATTCACAAAAGATTTAAGATTTACAAAGATTCAAAAATTTAC
7629318 AAAAGATTCAAGATTCACAAGGGATTAAG
261 AAAAGATTCAAGATTCACAAGGGATTAAG
* *
7629347 ATTCGCAATTCGAAATTCAAGACTTCTCAACTTGAAGTTCAAAAGTTTGCAATTAAATTCAAAGA
1 ATTCGCAATTCAAAATTCAAGACTTCTCAACTTGAAGTTCAAAAGTTCGCAATTAAATTCAAAGA
* *
7629412 TTCTCAATTTGAATTT-AAGGCTTGCAAAACATTCAAGGTTCTCCCAAAAGTTCAAAGATTCGCA
66 TTCTCAATTTGAATTTAAAGGCTTGCAAAACATTCAAAGTTCTCCCAAAAGTTCAAAGATTCACA
* * * *
7629476 AATAAATTGAATTAAAAAATTCACAAAA-TTTCAGATTCACAAAAGATTCAAGATTTTCAAAAAT
131 AATAAATTGAATTAAAAAATTCACAAAACTCTAAGATTCACAAAAGATTCAAGATTCTAAAAAAT
* *
7629540 TCAAGATTCACAAAAGTTTAAAGATTCGCAAGAGATTCT-AGATTTA
196 TCAAGATTCACAAAAGTTTAAAGATTCACAAAAGATT-TAAGATTTA
7629586 TAAGTGATTC
Statistics
Matches: 212, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
287 67 0.32
288 72 0.34
289 73 0.34
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (289 bp):
ATTCGCAATTCAAAATTCAAGACTTCTCAACTTGAAGTTCAAAAGTTCGCAATTAAATTCAAAGA
TTCTCAATTTGAATTTAAAGGCTTGCAAAACATTCAAAGTTCTCCCAAAAGTTCAAAGATTCACA
AATAAATTGAATTAAAAAATTCACAAAACTCTAAGATTCACAAAAGATTCAAGATTCTAAAAAAT
TCAAGATTCACAAAAGTTTAAAGATTCACAAAAGATTTAAGATTTACAAAGATTCAAAAATTTAC
AAAAGATTCAAGATTCACAAGGGATTAAG
Found at i:7629822 original size:19 final size:19
Alignment explanation
Indices: 7629795--7629869 Score: 53
Period size: 19 Copynumber: 3.6 Consensus size: 19
7629785 AAAAATTTAA
*
7629795 GATTTAAAGATTCACAAAT
1 GATTCAAAGATTCACAAAT
7629814 GATTCAAAGATCTGCA-ATAATTT
1 GATTCAAAGAT-T-CACA-AA--T
* *
7629837 AAGATTCAAATATTCGCAAAT
1 --GATTCAAAGATTCACAAAT
7629858 GATTCAAAGATT
1 GATTCAAAGATT
7629870 AGCAATTGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
19 21 0.48
20 2 0.05
21 5 0.11
23 4 0.09
24 2 0.05
25 10 0.23
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (19 bp):
GATTCAAAGATTCACAAAT
Found at i:7630718 original size:131 final size:132
Alignment explanation
Indices: 7630483--7630789 Score: 404
Period size: 132 Copynumber: 2.3 Consensus size: 132
7630473 GTTTCAAACT
* * * *
7630483 TTATCTTCACAAAGTTTTCCTCATA-CAAGAATCAAAATCTCATCAAAAGACTTTATTTTTGCAA
1 TTATCTTCA-AAAATTATCCTC-TACCAAGGATTAAAATCTCATCAAAAGACTTTATTTTTGCAA
*
7630547 AATATTTCCTCAATCGAAGATTATTACCTTACTTATTTTTTCAAAAATTTCTCATCAGGAATCAA
64 AATATTTCCTCAATCGAAGATTATTACCTTACTCATTTTTTCAAAAATTTCTCATCAGGAATCAA
7630612 AAT-
129 AATC
* * * * * ** *
7630615 TTATCTTCTAAAATTATCGT-TCACCAATGATTAAATTCTCATTAAAAGGTTTTATTTTTGTAAA
1 TTATCTTCAAAAATTATCCTCT-ACCAAGGATTAAAATCTCATCAAAAGACTTTATTTTTGCAAA
* * * *
7630679 ATATTTCCTCTACTTGAGGATTATTACCTTACTCATTTTTTCAAAAATTTTTCATCAGGAATCAA
65 ATATTTCCTC-AATCGAAGATTATTACCTTACTCATTTTTTCAAAAATTTCTCATCAGGAATCAA
7630744 AATC
129 AATC
7630748 TTATCTTCAAAAATTATCCTCTACCAAGGATTAAAATCTCAT
1 TTATCTTCAAAAATTATCCTCTACCAAGGATTAAAATCTCAT
7630790 ATTTGAGAAA
Statistics
Matches: 149, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
129 1 0.01
130 1 0.01
131 50 0.34
132 60 0.40
133 36 0.24
134 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.40
Consensus pattern (132 bp):
TTATCTTCAAAAATTATCCTCTACCAAGGATTAAAATCTCATCAAAAGACTTTATTTTTGCAAAA
TATTTCCTCAATCGAAGATTATTACCTTACTCATTTTTTCAAAAATTTCTCATCAGGAATCAAAA
TC
Found at i:7631726 original size:41 final size:41
Alignment explanation
Indices: 7631673--7631773 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
7631663 TTGAGTATTC
*
7631673 TTTTCTTCTTTTTTTT-TTT-CACATTTTTCTCATTTCTCAT
1 TTTTCTT-TTTTTTTTCTTTCCACATTTTTCTCATTTCTCAA
** *
7631713 TTTTCTTTTTTTTTTCTTTCCATTTTTTTCTCATTTTTCAA
1 TTTTCTTTTTTTTTTCTTTCCACATTTTTCTCATTTCTCAA
*
7631754 TTTT-TTTTTCTTTTCATTTC
1 TTTTCTTTTTTTTTTC-TTTC
7631774 TTTTTCACTT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.15
40 20 0.38
41 25 0.47
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (41 bp):
TTTTCTTTTTTTTTTCTTTCCACATTTTTCTCATTTCTCAA
Found at i:7631743 original size:34 final size:36
Alignment explanation
Indices: 7631705--7631777 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 36
7631695 ATTTTTCTCA
*
7631705 TTTCTCATTTTTC-TTTTTTTTTTCTTTCCATTT-T
1 TTTCTCATTTTTCAATTTTTTTTTCTTTCCATTTCT
*
7631739 TTTCTCATTTTTCAATTTTTTTTTCTTTTCATTTCT
1 TTTCTCATTTTTCAATTTTTTTTTCTTTCCATTTCT
7631775 TTT
1 TTT
7631778 TCACTTCGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 13 0.37
35 18 0.51
36 4 0.11
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.75
Consensus pattern (36 bp):
TTTCTCATTTTTCAATTTTTTTTTCTTTCCATTTCT
Found at i:7636000 original size:26 final size:27
Alignment explanation
Indices: 7635962--7636020 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
7635952 AAAGAATTAA
* * *
7635962 TAAATTTTTCAAT-ATTTTGTAAGATT
1 TAAATTCTCCAATCATTTGGTAAGATT
*
7635988 TAAATTCTCCAATCATTTGGTAGGATT
1 TAAATTCTCCAATCATTTGGTAAGATT
*
7636015 GAAATT
1 TAAATT
7636021 TTATTTTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (27 bp):
TAAATTCTCCAATCATTTGGTAAGATT
Found at i:7644180 original size:22 final size:22
Alignment explanation
Indices: 7644155--7644198 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7644145 TGTATATTTA
*
7644155 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7644177 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7644199 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7644399 original size:25 final size:23
Alignment explanation
Indices: 7644347--7644406 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 23
7644337 AAAATTTTCA
* *
7644347 GCCTTCATTGCTGACTTTTTTAG
1 GCCTTCATTGCCGACTTGTTTAG
7644370 GCCTTCATTGCCGAATCTTGTTTAG
1 GCCTTCATTGCCG-A-CTTGTTTAG
7644395 GCCTTCATTGCC
1 GCCTTCATTGCC
7644407 TAACCCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 12 0.36
24 1 0.03
25 20 0.61
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.42
Consensus pattern (23 bp):
GCCTTCATTGCCGACTTGTTTAG
Found at i:7644603 original size:18 final size:18
Alignment explanation
Indices: 7644580--7644614 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7644570 ATGTTCTTTG
*
7644580 GGTAAAGTTTCTAGTTCA
1 GGTAAAGCTTCTAGTTCA
*
7644598 GGTAAAGCTTCTGGTTC
1 GGTAAAGCTTCTAGTTC
7644615 TCATGGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
GGTAAAGCTTCTAGTTCA
Found at i:7648079 original size:22 final size:22
Alignment explanation
Indices: 7648053--7648096 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7648043 TGTATATTTA
*
7648053 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7648075 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7648097 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7649385 original size:3 final size:3
Alignment explanation
Indices: 7649377--7649405 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7649367 ACAACATTTC
7649377 AAT AAT AAT AA- AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7649406 TAAACTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7650685 original size:34 final size:34
Alignment explanation
Indices: 7650641--7650760 Score: 116
Period size: 34 Copynumber: 3.5 Consensus size: 34
7650631 ATTTTATAAC
* * * *
7650641 TTTTGGAAATGTACTTTTGATAAATCATAACACT
1 TTTTGAAAATGTATTTTTAAAAAATCATAACACT
* * *
7650675 TTTTGAAAATGAATTTTCAAAAAATGATAACA-T
1 TTTTGAAAATGTATTTTTAAAAAATCATAACACT
* * *
7650708 TTTTCGAAAATGCATTTTTAAAAAATTATAACGCT
1 TTTT-GAAAATGTATTTTTAAAAAATCATAACACT
* *
7650743 TCTTGAAAATCTATTTTT
1 TTTTGAAAATGTATTTTT
7650761 GAGAGTGTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
33 5 0.07
34 61 0.87
35 4 0.06
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (34 bp):
TTTTGAAAATGTATTTTTAAAAAATCATAACACT
Found at i:7651884 original size:63 final size:63
Alignment explanation
Indices: 7651817--7651935 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 63
7651807 AAAAAACATA
*
7651817 AAATAAGCTAATTAAAAGACATTACAAGTTTCAA-AAGCATTCTTCATACATGGACCCCATAGT
1 AAATAAGCTAATTAAAAGACATTACAAGTTTCAACAA-CATTATTCATACATGGACCCCATAGT
*
7651880 AAATAAGCTAATTAAAGGACATTACAAGTTTCAACAACATTATTCATACATGGACC
1 AAATAAGCTAATTAAAAGACATTACAAGTTTCAACAACATTATTCATACATGGACC
7651936 TTATAGCCTT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
63 51 0.96
64 2 0.04
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (63 bp):
AAATAAGCTAATTAAAAGACATTACAAGTTTCAACAACATTATTCATACATGGACCCCATAGT
Found at i:7658351 original size:2 final size:2
Alignment explanation
Indices: 7658344--7658368 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7658334 CCATTTTTAT
7658344 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7658369 TTTTCGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7659317 original size:2 final size:2
Alignment explanation
Indices: 7659310--7659359 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
7659300 AAGGCTCAGC
*
7659310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7659352 GT AT AT AT
1 AT AT AT AT
7659360 GTATGTGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7664900 original size:17 final size:17
Alignment explanation
Indices: 7664875--7664910 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7664865 AGCTTCACGC
7664875 TTTTTCTTTTTT-TTTT
1 TTTTTCTTTTTTATTTT
7664891 TTTTTGCTTTTTTATTTT
1 TTTTT-CTTTTTTATTTT
7664909 TT
1 TT
7664911 CTTTATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTTTTATTTT
Found at i:7677285 original size:13 final size:13
Alignment explanation
Indices: 7677267--7677291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7677257 AAATTGCCGA
7677267 ATGTTATAAAGGG
1 ATGTTATAAAGGG
7677280 ATGTTATAAAGG
1 ATGTTATAAAGG
7677292 TTGGCAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
ATGTTATAAAGGG
Found at i:7680357 original size:12 final size:12
Alignment explanation
Indices: 7680340--7680378 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7680330 GAGGATGAGA
*
7680340 AAGAGAAAAATG
1 AAGAGAAGAATG
7680352 AAGAGAAGAATG
1 AAGAGAAGAATG
* *
7680364 AGGATAAGAATG
1 AAGAGAAGAATG
7680376 AAG
1 AAG
7680379 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.10
Consensus pattern (12 bp):
AAGAGAAGAATG
Found at i:7695271 original size:2 final size:2
Alignment explanation
Indices: 7695264--7695295 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7695254 AGTACTCTTT
*
7695264 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7695296 ATGTGAAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7696417 original size:32 final size:32
Alignment explanation
Indices: 7696376--7696447 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
7696366 TTATACCTAC
* *
7696376 ATATAATATCTATCCCTATTTTCATATC-TATA
1 ATATAATATCTATACCTATTCTCATA-CATATA
*
7696408 ATATAATATCTATATCTATTCTCATACATATA
1 ATATAATATCTATACCTATTCTCATACATATA
7696440 ATATAATA
1 ATATAATA
7696448 CCCATCTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 1 0.03
32 35 0.97
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.44
Consensus pattern (32 bp):
ATATAATATCTATACCTATTCTCATACATATA
Found at i:7696696 original size:19 final size:19
Alignment explanation
Indices: 7696654--7696696 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7696644 TCAGTTTTTG
* *
7696654 GTTTCTTGGTTCAAAATCC
1 GTTTCTTGATTCAAAATAC
* *
7696673 ATTTCTTGATTCAAAATAT
1 GTTTCTTGATTCAAAATAC
7696692 GTTTC
1 GTTTC
7696697 AAATTTAATA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.47
Consensus pattern (19 bp):
GTTTCTTGATTCAAAATAC
Found at i:7698156 original size:26 final size:27
Alignment explanation
Indices: 7698127--7698177 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7698117 CATTTTTTTA
7698127 AAACCGTT-ATTTGTTAAAATTTATTG
1 AAACCGTTGATTTGTTAAAATTTATTG
* * *
7698153 AAACCTTTGGTTTTTTAAAATTTAT
1 AAACCGTTGATTTGTTAAAATTTAT
7698178 GTTTTGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (27 bp):
AAACCGTTGATTTGTTAAAATTTATTG
Found at i:7698418 original size:18 final size:16
Alignment explanation
Indices: 7698390--7698431 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
7698380 TAGTCAATTG
*
7698390 TTGTATTTATTAGTA-T
1 TTGTATTT-TTATTATT
7698406 TTGTATTTTTATTATT
1 TTGTATTTTTATTATT
*
7698422 TTTTATTTTT
1 TTGTATTTTT
7698432 GGTCATGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (16 bp):
TTGTATTTTTATTATT
Found at i:7698428 original size:16 final size:18
Alignment explanation
Indices: 7698395--7698431 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
7698385 AATTGTTGTA
7698395 TTTATTAGTATTTGTATT
1 TTTATTAGTATTTGTATT
*
7698413 TTTATTA-T-TTTTTATT
1 TTTATTAGTATTTGTATT
7698429 TTT
1 TTT
7698432 GGTCATGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 1 0.06
18 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTATTAGTATTTGTATT
Found at i:7700418 original size:15 final size:15
Alignment explanation
Indices: 7700396--7700449 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
7700386 TAAATTTAAA
7700396 ATTATTTTATTTTATT
1 ATTATTTTATTTT-TT
* *
7700412 ATTTTTTTATTGTTT
1 ATTATTTTATTTTTT
7700427 A-TATTTTATTTATTT
1 ATTATTTTATTT-TTT
7700442 ACTTATTT
1 A-TTATTT
7700450 ATCTTATTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 8 0.26
15 7 0.23
16 11 0.35
17 5 0.16
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (15 bp):
ATTATTTTATTTTTT
Found at i:7700438 original size:18 final size:18
Alignment explanation
Indices: 7700406--7700440 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7700396 ATTATTTTAT
7700406 TTTATTATTTTTTTATTG
1 TTTATTATTTTTTTATTG
7700424 TTTA-TATTTTATTTATT
1 TTTATTATTTT-TTTATT
7700441 TACTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTATTATTTTTTTATTG
Found at i:7700944 original size:17 final size:19
Alignment explanation
Indices: 7700922--7700970 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
7700912 TTTCATTTGT
7700922 TTCATACATC-TCAT-TCA
1 TTCATACATCATCATATCA
*
7700939 TTCATAGATCATCATCATCA
1 TTCATACATCATCAT-ATCA
*
7700959 TTCATTCATCAT
1 TTCATACATCAT
7700971 GTTATTGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 4 0.15
20 13 0.50
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.41
Consensus pattern (19 bp):
TTCATACATCATCATATCA
Found at i:7706071 original size:84 final size:86
Alignment explanation
Indices: 7705909--7706072 Score: 194
Period size: 84 Copynumber: 1.9 Consensus size: 86
7705899 TTCGAACTAG
* *
7705909 ATTCATAAGTCTTTCTGAGCTAATATATATTTTAGAGTTGAGATTTGTAAGACTTCCAGGCATAA
1 ATTCATAAGTCTTTCTGAGCTAATATATATTTTAGAGTTGAGATTTATAAGACTTCCAAGCATAA
* *
7705974 TTTCTTAGTCCTTCAAGCAAT
66 TCTCTTAATCCTTCAAGCAAT
* * * *
7705995 ATTCATAA-TTTTTTTGAGCTAA-ATCTATTTTAGAGTAT-AGATTTATAGGACCTT-CAAGCAT
1 ATTCATAAGTCTTTCTGAGCTAATATATATTTTAGAGT-TGAGATTTATAAGA-CTTCCAAGCAT
7706056 AATCTC-TAATACCTTCA
64 AATCTCTTAAT-CCTTCA
7706073 GCATAATCTT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
83 3 0.04
84 40 0.60
85 16 0.24
86 8 0.12
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (86 bp):
ATTCATAAGTCTTTCTGAGCTAATATATATTTTAGAGTTGAGATTTATAAGACTTCCAAGCATAA
TCTCTTAATCCTTCAAGCAAT
Found at i:7706072 original size:22 final size:23
Alignment explanation
Indices: 7706044--7706103 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
7706034 GATTTATAGG
7706044 ACCTTCAAGCATAATC-TCTAA-T
1 ACCTTCAAGCATAATCTTC-AAGT
7706066 ACCTTC-AGCATAATCTTCAAGT
1 ACCTTCAAGCATAATCTTCAAGT
*
7706088 -CCTCCAAGCATAATCT
1 ACCTTCAAGCATAATCT
7706104 ATAAGACCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 15 0.44
22 19 0.56
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (23 bp):
ACCTTCAAGCATAATCTTCAAGT
Found at i:7706552 original size:22 final size:23
Alignment explanation
Indices: 7706515--7706578 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
7706505 TTTCTTTTAT
*
7706515 TTATTTTTTATATCTTGTTT-GTC
1 TTATTTATT-TATCTTGTTTAGTC
*
7706538 TTATTTATTTATCTTTTTTTAGTC
1 TTATTTATTTATC-TTGTTTAGTC
*
7706562 -T-TTTATTTATCTAGTTT
1 TTATTTATTTATCTTGTTT
7706579 TAAATTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 4 0.11
22 14 0.40
23 14 0.40
24 3 0.09
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.70
Consensus pattern (23 bp):
TTATTTATTTATCTTGTTTAGTC
Found at i:7706565 original size:11 final size:11
Alignment explanation
Indices: 7706541--7706573 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7706531 GTTTGTCTTA
7706541 TTTATTTATCT
1 TTTATTTATCT
7706552 TTT-TTTAGTCT
1 TTTATTTA-TCT
7706563 TTTATTTATCT
1 TTTATTTATCT
7706574 AGTTTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.20
11 12 0.60
12 4 0.20
ACGTcount: A:0.15, C:0.09, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTATTTATCT
Found at i:7707157 original size:13 final size:12
Alignment explanation
Indices: 7707133--7707187 Score: 58
Period size: 13 Copynumber: 4.5 Consensus size: 12
7707123 AAGTTTCTAA
7707133 GATTTTTGTTGG
1 GATTTTTGTTGG
7707145 GATTTTCTGTTGG
1 GATTTT-TGTTGG
** *
7707158 TTTTTTATTTTGG
1 GATTTT-TGTTGG
7707171 GATTTTTGTTGG
1 GATTTTTGTTGG
7707183 G-TTTT
1 GATTTT
7707188 CAAGAATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
11 4 0.11
12 12 0.34
13 19 0.54
ACGTcount: A:0.07, C:0.02, G:0.27, T:0.64
Consensus pattern (12 bp):
GATTTTTGTTGG
Found at i:7707351 original size:5 final size:5
Alignment explanation
Indices: 7707341--7707445 Score: 59
Period size: 5 Copynumber: 19.0 Consensus size: 5
7707331 TGTTTTCTGT
** * * *
7707341 TTTTA TTTTA TTTTA TTTTA CCTT- TTCTA TTTTC TATTTA TTTTA TTTTTC
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA -TTTTA
7707392 TATTTA TTTTA TTTTTA GTTATTA TTATTA TTTTCA TCTTTAA TTATTA
1 T-TTTA TTTTA -TTTTA -TT-TTA TT-TTA TTTT-A T-TTT-A TT-TTA
7707441 TTTTA
1 TTTTA
7707446 CTCATTACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
4 1 0.01
5 35 0.44
6 33 0.42
7 10 0.13
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (5 bp):
TTTTA
Found at i:7707381 original size:30 final size:30
Alignment explanation
Indices: 7707333--7707389 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7707323 TTTCATCCTG
*
7707333 TTTTCTGTTTTTATTTTATTTTATTTTACC
1 TTTTCTATTTTTATTTTATTTTATTTTACC
7707363 TTTTCTATTTTCTA-TTTATTTTATTTT
1 TTTTCTATTTT-TATTTTATTTTATTTT
7707390 TCTATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.75
Consensus pattern (30 bp):
TTTTCTATTTTTATTTTATTTTATTTTACC
Found at i:7707389 original size:16 final size:16
Alignment explanation
Indices: 7707368--7707420 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 16
7707358 TTACCTTTTC
7707368 TATTTTCTATTTATTT
1 TATTTTCTATTTATTT
7707384 TATTTTTCTATTTATTT
1 TA-TTTTCTATTTATTT
*
7707401 TATTTT-TAGTTATTAT
1 TATTTTCTATTTATT-T
7707417 TATT
1 TATT
7707421 ATTTTCATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 7 0.21
16 11 0.32
17 16 0.47
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (16 bp):
TATTTTCTATTTATTT
Found at i:7707392 original size:17 final size:17
Alignment explanation
Indices: 7707370--7707407 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
7707360 ACCTTTTCTA
7707370 TTTTCTATTTATTTTAT
1 TTTTCTATTTATTTTAT
7707387 TTTTCTATTTATTTTAT
1 TTTTCTATTTATTTTAT
7707404 TTTT
1 TTTT
7707408 AGTTATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCTATTTATTTTAT
Found at i:7707433 original size:25 final size:24
Alignment explanation
Indices: 7707395--7707442 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7707385 ATTTTTCTAT
* *
7707395 TTATTTTATTTTTAGTTATTATTA
1 TTATTTTATCTTTAATTATTATTA
7707419 TTATTTTCATCTTTAATTATTATT
1 TTATTTT-ATCTTTAATTATTATT
7707443 TTACTCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (24 bp):
TTATTTTATCTTTAATTATTATTA
Found at i:7708440 original size:18 final size:20
Alignment explanation
Indices: 7708419--7708457 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7708409 TATTTTGTTT
7708419 TTTATTTT-T-ATTTTTTAA
1 TTTATTTTATCATTTTTTAA
7708437 TTTATTTTATCATTTTTTAA
1 TTTATTTTATCATTTTTTAA
7708457 T
1 T
7708458 ACTTTCATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 1 0.05
20 10 0.53
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTATTTTATCATTTTTTAA
Found at i:7708754 original size:17 final size:18
Alignment explanation
Indices: 7708721--7708756 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7708711 GTTTCTGTAC
7708721 TTTTATTTAAAATAATTT
1 TTTTATTTAAAATAATTT
7708739 TTTTATTTAAAA-AATTT
1 TTTTATTTAAAATAATTT
7708756 T
1 T
7708757 CATTAGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTATTTAAAATAATTT
Found at i:7714113 original size:28 final size:28
Alignment explanation
Indices: 7714082--7714169 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
7714072 ATTGCAAGTT
7714082 GTTATAATTATTTCTTTAATCGCTAATA
1 GTTATAATTATTTCTTTAATCGCTAATA
* * * * *
7714110 GTTATCA-TATTT-ATGACAT-TCTAAGTT
1 GTTATAATTATTTCTTTA-ATCGCTAA-TA
7714137 GTTATAATTATTTCTTTAATCGCTAATA
1 GTTATAATTATTTCTTTAATCGCTAATA
7714165 GTTAT
1 GTTAT
7714170 CACGTTTATG
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
26 6 0.13
27 14 0.31
28 19 0.42
29 6 0.13
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (28 bp):
GTTATAATTATTTCTTTAATCGCTAATA
Found at i:7714161 original size:55 final size:55
Alignment explanation
Indices: 7714077--7714188 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
7714067 AATGAATTGC
* *
7714077 AAGTTGTTATAATTATTTCTTTAATCGCTAATAGTTATCATATTTATGACATTCT
1 AAGTTGTTATAATTATTTCTTTAATCGCTAATAGTTATCACATTTATGAAATTCT
*
7714132 AAGTTGTTATAATTATTTCTTTAATCGCTAATAGTTATCACGTTTATGAAATTCT
1 AAGTTGTTATAATTATTTCTTTAATCGCTAATAGTTATCACATTTATGAAATTCT
7714187 AA
1 AA
7714189 CTATGTTGTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.47
Consensus pattern (55 bp):
AAGTTGTTATAATTATTTCTTTAATCGCTAATAGTTATCACATTTATGAAATTCT
Found at i:7715008 original size:23 final size:23
Alignment explanation
Indices: 7714958--7715008 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
7714948 GTAAGGTTTT
*
7714958 ATTTT-TTTTTAATTTCTTTTAA
1 ATTTTATTTTTAATCTCTTTTAA
*
7714980 AATTTATTTTTAATCTC-TTTAA
1 ATTTTATTTTTAATCTCTTTTAA
7715002 CATTTTA
1 -ATTTTA
7715009 GTCTTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (23 bp):
ATTTTATTTTTAATCTCTTTTAA
Found at i:7715041 original size:33 final size:33
Alignment explanation
Indices: 7714981--7715047 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
7714971 TTCTTTTAAA
* *
7714981 ATTTATTTTTAATCTCTTTAACATTTTAGTCTT
1 ATTTATATTTAATCTCTTTAACATTTTAATCTT
7715014 ATTTATATTT-ATCT-TTTAAACATTTTTAATCTT
1 ATTTATATTTAATCTCTTT-AACA-TTTTAATCTT
7715047 A
1 A
7715048 AAATCAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 3 0.10
32 8 0.27
33 19 0.63
ACGTcount: A:0.28, C:0.10, G:0.01, T:0.60
Consensus pattern (33 bp):
ATTTATATTTAATCTCTTTAACATTTTAATCTT
Found at i:7720778 original size:31 final size:32
Alignment explanation
Indices: 7720708--7720767 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
7720698 AATTAAAAAT
* **
7720708 AAAAAAA-TCTAAATTTTTTTTTAAAAATCTA
1 AAAAAAATTGTAAATTTTTTTAAAAAAATCTA
7720739 AAAAAAATTGTAAATTTTTTTAAAAAAAT
1 AAAAAAATTGTAAATTTTTTTAAAAAAAT
7720768 TATGAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (32 bp):
AAAAAAATTGTAAATTTTTTTAAAAAAATCTA
Found at i:7720844 original size:21 final size:20
Alignment explanation
Indices: 7720805--7720875 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
7720795 CTTACAACTT
* * *
7720805 TAATTTTTATATATATTTTA
1 TAATTTTTTTATTTTTTTTA
*
7720825 TAATTTTTTTAGTTTTTTTTT
1 TAATTTTTTTA-TTTTTTTTA
*
7720846 TAATTTTCTTTTATTTTTATTA
1 TAA-TTT-TTTTATTTTTTTTA
7720868 -AATTTTTT
1 TAATTTTTT
7720876 ATCATTAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
19 3 0.07
20 13 0.31
21 11 0.26
22 10 0.24
23 5 0.12
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.73
Consensus pattern (20 bp):
TAATTTTTTTATTTTTTTTA
Found at i:7721045 original size:36 final size:37
Alignment explanation
Indices: 7720984--7721054 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 37
7720974 TTTTTTATTT
*
7720984 AAAAAAATTTTATATTTTTAAATTTTCAATATTTTTCA
1 AAAAAAAATTTATATTTTTAAATTTTCAAT-TTTTTCA
* *
7721022 AAAAAAAATTTAT-TTTTT-TATTTTGAATTTTTT
1 AAAAAAAATTTATATTTTTAAATTTTCAATTTTTT
7721055 AACTTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 5 0.17
36 8 0.27
37 5 0.17
38 12 0.40
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.56
Consensus pattern (37 bp):
AAAAAAAATTTATATTTTTAAATTTTCAATTTTTTCA
Found at i:7721091 original size:19 final size:22
Alignment explanation
Indices: 7721049--7721103 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 22
7721039 TTATTTTGAA
7721049 TTTTTTAACTTTTTATGAATTTT
1 TTTTTTAA-TTTTTATGAATTTT
7721072 TTTTTTAATTTTTA-G-A-TTT
1 TTTTTTAATTTTTATGAATTTT
*
7721091 TTTTTGAATTTTT
1 TTTTTTAATTTTT
7721104 TAAGTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 15 0.48
20 1 0.03
21 1 0.03
22 6 0.19
23 8 0.26
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (22 bp):
TTTTTTAATTTTTATGAATTTT
Found at i:7721093 original size:31 final size:33
Alignment explanation
Indices: 7721035--7721129 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 33
7721025 AAAAATTTAT
7721035 TTTTTTATTTTGAATTTTTTAACTTTTTATGAA
1 TTTTTTATTTTGAATTTTTTAACTTTTTATGAA
* *
7721068 TTTTTT-TTTT-AA-TTTTTAGATTTTTTTTGAA
1 TTTTTTATTTTGAATTTTTTA-ACTTTTTATGAA
* * *
7721099 TTTTTTAAGTTTTTATTTTTTTAAATTTTTA
1 TTTTTT-A-TTTTGAATTTTTTAACTTTTTA
7721130 AAATTCTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
30 6 0.12
31 18 0.35
32 4 0.08
33 6 0.12
34 4 0.08
35 7 0.14
36 6 0.12
ACGTcount: A:0.22, C:0.01, G:0.05, T:0.72
Consensus pattern (33 bp):
TTTTTTATTTTGAATTTTTTAACTTTTTATGAA
Found at i:7721111 original size:19 final size:19
Alignment explanation
Indices: 7721070--7721112 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7721060 TTTATGAATT
* *
7721070 TTTTTTTTAATTTTTAGAT
1 TTTTTTTGAATTTTTAGAG
7721089 TTTTTTTGAATTTTTTA-AG
1 TTTTTTTGAA-TTTTTAGAG
7721108 TTTTT
1 TTTTT
7721113 ATTTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTTTTTGAATTTTTAGAG
Found at i:7721128 original size:16 final size:16
Alignment explanation
Indices: 7721099--7721129 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7721089 TTTTTTTGAA
*
7721099 TTTTTTAAGTTTTTAT
1 TTTTTTAAATTTTTAT
7721115 TTTTTTAAATTTTTA
1 TTTTTTAAATTTTTA
7721130 AAATTCTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTTAAATTTTTAT
Found at i:7722288 original size:18 final size:18
Alignment explanation
Indices: 7722251--7722290 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7722241 TAGTTATATA
*
7722251 TAAATATAATATTTTTAT
1 TAAATATAATATTTTAAT
7722269 TAAAT-TAATATTTTAAAT
1 TAAATATAATATTTT-AAT
7722287 TAAA
1 TAAA
7722291 GTATTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAATATAATATTTTAAT
Found at i:7722312 original size:42 final size:42
Alignment explanation
Indices: 7722256--7722348 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
7722246 ATATATAAAT
* *
7722256 ATAATATTTTTATTAA-ATTAATAT-TTTAAAT-TAAAGTATTAA
1 ATAATAATTTTATTAATA-TAATATATATAAATATAAA--ATTAA
7722298 ATAATAATTTTATTAATATAATATATATAAATATAAAATTAA
1 ATAATAATTTTATTAATATAATATATATAAATATAAAATTAA
7722340 ATAAATAAT
1 AT-AATAAT
7722349 AAAAATAAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
42 28 0.62
43 13 0.29
44 4 0.09
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (42 bp):
ATAATAATTTTATTAATATAATATATATAAATATAAAATTAA
Found at i:7722352 original size:17 final size:16
Alignment explanation
Indices: 7722324--7722357 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7722314 TATAATATAT
*
7722324 ATAAATATAAAATTAA
1 ATAAATATAAAAATAA
7722340 ATAAATAATAAAAATAA
1 ATAAAT-ATAAAAATAA
7722357 A
1 A
7722358 CATTTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAATATAAAAATAA
Found at i:7722850 original size:21 final size:21
Alignment explanation
Indices: 7722826--7722866 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7722816 TGAATTAAGT
*
7722826 AAATTAAATTTTAAATTTAAA
1 AAATTAAATATTAAATTTAAA
*
7722847 AAATTTAATATTAAATTTAA
1 AAATTAAATATTAAATTTAA
7722867 TATTTGATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTAAATATTAAATTTAAA
Found at i:7722864 original size:12 final size:12
Alignment explanation
Indices: 7722825--7722870 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
7722815 ATGAATTAAG
* *
7722825 TAAATTAAATTT
1 TAAATTTAATAT
7722837 TAAATTTAA-A-
1 TAAATTTAATAT
7722847 -AAATTTAATAT
1 TAAATTTAATAT
7722858 TAAATTTAATAT
1 TAAATTTAATAT
7722870 T
1 T
7722871 TGATGCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 8 0.28
10 1 0.03
12 20 0.69
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAAATTTAATAT
Found at i:7723508 original size:17 final size:17
Alignment explanation
Indices: 7723481--7723517 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7723471 TTTATTAAAA
7723481 TTAATAATTAAAAAATAT
1 TTAATAATTAAAAAAT-T
7723499 TTAA-AATTAAAAAATT
1 TTAATAATTAAAAAATT
7723515 TTA
1 TTA
7723518 CATGAGTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 11 0.58
18 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAATAATTAAAAAATT
Found at i:7724508 original size:19 final size:18
Alignment explanation
Indices: 7724485--7724536 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
7724475 TTTATTTAAT
7724485 TTTATATTATATTAAAAA
1 TTTATATTATATTAAAAA
* *
7724503 TATTATTTTATATTTAAAA
1 T-TTATATTATATTAAAAA
* *
7724522 TTAATATTTTATTAA
1 TTTATATTATATTAA
7724537 TTTTAAATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATATTATATTAAAAA
Found at i:7724521 original size:20 final size:19
Alignment explanation
Indices: 7724486--7724533 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
7724476 TTATTTAATT
*
7724486 TTATATTATATTAAAAATA
1 TTATTTTATATTAAAAATA
*
7724505 TTATTTTATATTTAAAATTA
1 TTATTTTATA-TTAAAAATA
*
7724525 ATATTTTAT
1 TTATTTTAT
7724534 TAATTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATTTTATATTAAAAATA
Found at i:7724550 original size:23 final size:23
Alignment explanation
Indices: 7724500--7724575 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 23
7724490 ATTATATTAA
*
7724500 AAATATTATT-TTATATTTAAAATT
1 AAATATT-TTATTA-ATTTTAAATT
7724524 -AATATTTTATTAATTTTAAATT
1 AAATATTTTATTAATTTTAAATT
* *
7724546 AAATATAATTTTATTAATATTAAATC
1 -AA-AT-ATTTTATTAATTTTAAATT
7724572 AAAT
1 AAAT
7724576 CAAAATCAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
22 11 0.25
23 9 0.20
24 3 0.07
25 4 0.09
26 17 0.39
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (23 bp):
AAATATTTTATTAATTTTAAATT
Found at i:7726080 original size:19 final size:19
Alignment explanation
Indices: 7726032--7726080 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7726022 TATATATTAG
7726032 TTTATTATATAATAAATAAA
1 TTTATT-TATAATAAATAAA
*
7726052 TTTTTATTATAAT-AATAAAA
1 TTTAT-TTATAATAAAT-AAA
7726072 TTTATTTAT
1 TTTATTTAT
7726081 TATGTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 7 0.28
20 17 0.68
21 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTATTTATAATAAATAAA
Found at i:7726118 original size:27 final size:27
Alignment explanation
Indices: 7726062--7726125 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
7726052 TTTTTATTAT
* *
7726062 AATAATAAAATTTATTTATTATGTTAA
1 AATAATAAAACTTATTTATAATGTTAA
* *
7726089 AATAAT-AAACTTATTCTATAATTTTTA
1 AATAATAAAACTTATT-TATAATGTTAA
*
7726116 AATAAAAAAA
1 AATAATAAAA
7726126 TTAAATTGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.27
27 19 0.63
28 3 0.10
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (27 bp):
AATAATAAAACTTATTTATAATGTTAA
Found at i:7726377 original size:22 final size:22
Alignment explanation
Indices: 7726352--7726395 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7726342 TAATCTCAAA
7726352 TTATGTTTAATATCTAAAATTT
1 TTATGTTTAATATCTAAAATTT
* * * *
7726374 TTATTTTTTATATTTTAAATTT
1 TTATGTTTAATATCTAAAATTT
7726396 ATTTTTAATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATGTTTAATATCTAAAATTT
Found at i:7729089 original size:14 final size:13
Alignment explanation
Indices: 7729051--7729089 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
7729041 ATCAAATAAA
*
7729051 ATTTATTTTTTCTT
1 ATTTA-TTTTTATT
7729065 ATTTATTTTTATT
1 ATTTATTTTTATT
7729078 ATTTTATTTTTA
1 A-TTTATTTTTA
7729090 ATAAATTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTATTTTTATT
Found at i:7729575 original size:21 final size:20
Alignment explanation
Indices: 7729541--7729590 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
7729531 TAATATATAT
* *
7729541 AAATACTAATAATAAAATTTA
1 AAATAATAAAAATAAAA-TTA
*
7729562 AAATAATAAAAATAACATTA
1 AAATAATAAAAATAAAATTA
*
7729582 AAAAAATAA
1 AAATAATAA
7729591 TCCAAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAATAAAAATAAAATTA
Found at i:7729908 original size:22 final size:21
Alignment explanation
Indices: 7729868--7729912 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
7729858 CTTTCTCTTC
* **
7729868 TCTTTCTCTCTCTCTCTCCCAG
1 TCTTTCTCTCTATAACT-CCAG
7729890 TCTTTCTCTCTATAACTCCAG
1 TCTTTCTCTCTATAACTCCAG
7729911 TC
1 TC
7729913 GGTTGCTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.11, C:0.40, G:0.04, T:0.44
Consensus pattern (21 bp):
TCTTTCTCTCTATAACTCCAG
Found at i:7735710 original size:23 final size:24
Alignment explanation
Indices: 7735683--7735728 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7735673 TAAGCTTGCT
7735683 TCTTCTT-TTTCCCTTTTTCTTTC
1 TCTTCTTCTTTCCCTTTTTCTTTC
**
7735706 TCTTCTTCTTTCTTTTTTTCTTT
1 TCTTCTTCTTTCCCTTTTTCTTT
7735729 TTTAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (24 bp):
TCTTCTTCTTTCCCTTTTTCTTTC
Found at i:7735929 original size:19 final size:17
Alignment explanation
Indices: 7735877--7735925 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
7735867 TAGGGATTGC
7735877 TTTTATTATAAGTTATAAA
1 TTTTATTA-AA-TTATAAA
* *
7735896 TTTTAATAAATTATATA
1 TTTTATTAAATTATAAA
7735913 TTTTATTAGAATT
1 TTTTATTA-AATT
7735926 TATACTAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 13 0.50
18 6 0.23
19 7 0.27
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (17 bp):
TTTTATTAAATTATAAA
Found at i:7737458 original size:3 final size:3
Alignment explanation
Indices: 7737450--7737493 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7737440 ATCATAGTCA
7737450 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7737494 AAATTAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7738008 original size:18 final size:18
Alignment explanation
Indices: 7737987--7738034 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
7737977 ATAATTATAT
* *
7737987 AAATATAATTAATTTTAA
1 AAATATAATTAAATTAAA
*
7738005 AAATATATTTAAAATTAAA
1 AAATATAATT-AAATTAAA
7738024 AAATATAATTA
1 AAATATAATTA
7738035 TATAATTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATATAATTAAATTAAA
Found at i:7741149 original size:2 final size:2
Alignment explanation
Indices: 7741142--7741167 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7741132 CTGTTTGTTT
7741142 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7741168 ATTGGTGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7748208 original size:347 final size:347
Alignment explanation
Indices: 7747573--7748246 Score: 1141
Period size: 347 Copynumber: 1.9 Consensus size: 347
7747563 TTTTGGTCAA
7747573 TAAGAAAAAGGAGAACAAGCAAATAGCAATAAATCTCGAGCTCTGGGAACAAGTGCTTCGCTGGA
1 TAAGAAAAAGGAGAACAAGCAAATAGCAATAAATCTCGAGCTCTGGGAACAAGTGCTTCGCTGGA
* *
7747638 ATCTGAACTGTAAATGTTGCAGTATCGACTTCCATGTCATGCTCATCTTCCTACAATAATATTTA
66 ATCTGAACTGCAAATGTTGCAGTATCGACTTCCATGTCATGCTCATCTTCCTACAATAATAATTA
* *
7747703 ATTCAGAGGCAATACTAGGAACAAAAGCTTCCAAGTTGAAATTAAAGAAACAAAAATTTCCATGC
131 ATTCAGAGGCAATACTAGGAACAAAAGCTTCCAAGTTGAAATTAAAGAAACAAAAATTACCATAC
7747768 CAACATGCAATAATATAACATTCAAGATCATTACAGTCATGAAAACATGCAGCTGCCCAATTCTA
196 CAACATGCAATAATATAACATTCAAGATCATTACAGTCATGAAAACATGCAGCTGCCCAATTCTA
* * * *
7747833 AAATCAAACTTTCAAACTATACATAAAGACCTCAAATATACAGAAATCCTATGTCTACATTATAG
261 AAATCAAACTTTCAAACTAGACATAAAGACCTCAAATACACAGAAATACTACGTCTACATTATAG
7747898 ATTTTTTTTTTTTTATGGTCTG
326 ATTTTTTTTTTTTTATGGTCTG
* * *
7747920 TAAGAAAAAGGAGAACATGTAAATAGCAATAAATCTCGAGCTCTGGGAACAAGTGTTTCGCTGGA
1 TAAGAAAAAGGAGAACAAGCAAATAGCAATAAATCTCGAGCTCTGGGAACAAGTGCTTCGCTGGA
* ** * *
7747985 GTCTGAACTGCGGATGTTGCAGTATTGACTTCCATGTCATGCTCATCTTCCTACAATCATAATTA
66 ATCTGAACTGCAAATGTTGCAGTATCGACTTCCATGTCATGCTCATCTTCCTACAATAATAATTA
*
7748050 ATTCAGAGGCAATACTAGGAATAAAAGCTTCCAAGTTGAAATTAAAGAAACAAAAATTACCATAC
131 ATTCAGAGGCAATACTAGGAACAAAAGCTTCCAAGTTGAAATTAAAGAAACAAAAATTACCATAC
* * * *
7748115 CAACATGCCATAATATAACATTCAAGATTATTACTGTCATGAAAACATGCTGCTGCCCAATTCTA
196 CAACATGCAATAATATAACATTCAAGATCATTACAGTCATGAAAACATGCAGCTGCCCAATTCTA
* *
7748180 AAATCAAACTTTCAAACTAGACATAAAGACCTCAAATACACAGAAGTACTCCGTCTACATTATAG
261 AAATCAAACTTTCAAACTAGACATAAAGACCTCAAATACACAGAAATACTACGTCTACATTATAG
7748245 AT
326 AT
7748247 ATTGTCATCT
Statistics
Matches: 304, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
347 304 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (347 bp):
TAAGAAAAAGGAGAACAAGCAAATAGCAATAAATCTCGAGCTCTGGGAACAAGTGCTTCGCTGGA
ATCTGAACTGCAAATGTTGCAGTATCGACTTCCATGTCATGCTCATCTTCCTACAATAATAATTA
ATTCAGAGGCAATACTAGGAACAAAAGCTTCCAAGTTGAAATTAAAGAAACAAAAATTACCATAC
CAACATGCAATAATATAACATTCAAGATCATTACAGTCATGAAAACATGCAGCTGCCCAATTCTA
AAATCAAACTTTCAAACTAGACATAAAGACCTCAAATACACAGAAATACTACGTCTACATTATAG
ATTTTTTTTTTTTTATGGTCTG
Found at i:7749661 original size:21 final size:20
Alignment explanation
Indices: 7749622--7749661 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7749612 TATTTCAAAC
*
7749622 TTTTTAATTAATTACATTTA
1 TTTTTAATTAATAACATTTA
*
7749642 TTTTTAATTGAATAAGATTT
1 TTTTTAATT-AATAACATTT
7749662 TTAATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (20 bp):
TTTTTAATTAATAACATTTA
Found at i:7754361 original size:36 final size:35
Alignment explanation
Indices: 7754310--7754425 Score: 99
Period size: 36 Copynumber: 3.3 Consensus size: 35
7754300 AAATTAAAAC
* * *
7754310 ACCATACCAGAGCAGTGGCCACACCACCCAGAGTG
1 ACCATAACAGAGCAGTAGCCACACCACCCAAAGTG
*
7754345 ACCATAACAGCAGCAGTAGCCACACTACCCAAAGTG
1 ACCATAACAG-AGCAGTAGCCACACCACCCAAAGTG
* * * * * *
7754381 ATCAGAGCCATAGTAGCAGCCACACCACCCAGAA-TG
1 ACCATA-ACAGAGCAGTAGCCACACCACCCA-AAGTG
*
7754417 ACCACAACA
1 ACCATAACA
7754426 ATAGCTAAGC
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
35 11 0.17
36 49 0.77
37 4 0.06
ACGTcount: A:0.37, C:0.35, G:0.18, T:0.09
Consensus pattern (35 bp):
ACCATAACAGAGCAGTAGCCACACCACCCAAAGTG
Found at i:7754439 original size:30 final size:30
Alignment explanation
Indices: 7754405--7754516 Score: 125
Period size: 30 Copynumber: 3.6 Consensus size: 30
7754395 AGCAGCCACA
*
7754405 CCACCCAGAATGACCACAACAATAGCTAAG
1 CCACCCATAATGACCACAACAATAGCTAAG
* * * * *
7754435 CCACCTACAATGACCAATACAATAATAGCCAAA
1 CCACCCATAATGACC---ACAACAATAGCTAAG
* *
7754468 CTACCCATAATGACCACAGCAATAGCTAAG
1 CCACCCATAATGACCACAACAATAGCTAAG
7754498 CCACCCATAATGACCACAA
1 CCACCCATAATGACCACAA
7754517 TAGCAACCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
30 41 0.63
33 24 0.37
ACGTcount: A:0.44, C:0.33, G:0.10, T:0.13
Consensus pattern (30 bp):
CCACCCATAATGACCACAACAATAGCTAAG
Found at i:7755012 original size:70 final size:71
Alignment explanation
Indices: 7754936--7755072 Score: 204
Period size: 71 Copynumber: 1.9 Consensus size: 71
7754926 GCTAAGCATA
* * *
7754936 CATCAACATCAACAATAGTTGTAGATA-TTCTTTGAATAAAGAGATTGAAGGCCATTTAGATGGT
1 CATCAACATCAACAACAGCTATAGATAGTTCTTTGAATAAAGAGATTGAAGGCCATTTAGATGGT
7755000 ATCGTG
66 ATCGTG
* * * *
7755006 CATCAACATCAACAACCGCTATAGATAGTTCTTTGAATAAGGAGATTGATGGCCATTTATATGGT
1 CATCAACATCAACAACAGCTATAGATAGTTCTTTGAATAAAGAGATTGAAGGCCATTTAGATGGT
7755071 AT
66 AT
7755073 TATTGAAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
70 23 0.39
71 36 0.61
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (71 bp):
CATCAACATCAACAACAGCTATAGATAGTTCTTTGAATAAAGAGATTGAAGGCCATTTAGATGGT
ATCGTG
Found at i:7756766 original size:57 final size:57
Alignment explanation
Indices: 7756694--7756808 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
7756684 TCTCCCTCAA
* *
7756694 AATTTAGTGGTCTATTCAAGATAATTTCAACATAACAATAATTAATTAACCAATTTG
1 AATTTAGTGGCCTATTCAAGATAATTTCAACATAACAATAATTAATCAACCAATTTG
*
7756751 AATTTAGTGGCCTATTCAAGATAATTTCAACATAACAATAATTAATCAACCTATTTG
1 AATTTAGTGGCCTATTCAAGATAATTTCAACATAACAATAATTAATCAACCAATTTG
7756808 A
1 A
7756809 GGCCACTTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.36
Consensus pattern (57 bp):
AATTTAGTGGCCTATTCAAGATAATTTCAACATAACAATAATTAATCAACCAATTTG
Found at i:7777558 original size:21 final size:22
Alignment explanation
Indices: 7777534--7777575 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7777524 TCTATAAAAC
7777534 CTCAAGCCATG-TCTAAAAGAT
1 CTCAAGCCATGATCTAAAAGAT
* *
7777555 CTCAAGGCATGATTTAAAAGA
1 CTCAAGCCATGATCTAAAAGA
7777576 CCTTCAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (22 bp):
CTCAAGCCATGATCTAAAAGAT
Found at i:7777827 original size:23 final size:22
Alignment explanation
Indices: 7777799--7777862 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
7777789 AACTTCAAAA
7777799 TATCTTTTTTGAAAACCTTCAAG
1 TATCTTTTTT-AAAACCTTCAAG
* * **
7777822 TATCTTCTTTAAAACTTTTGAG
1 TATCTTTTTTAAAACCTTCAAG
7777844 TATCTTTTTTCAAAACCTT
1 TATCTTTTTT-AAAACCTT
7777863 TGGGTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.48
Consensus pattern (22 bp):
TATCTTTTTTAAAACCTTCAAG
Found at i:7777864 original size:23 final size:23
Alignment explanation
Indices: 7777799--7777887 Score: 99
Period size: 23 Copynumber: 3.9 Consensus size: 23
7777789 AACTTCAAAA
* **
7777799 TATCTTTTTTGAAAACCTTCAAG
1 TATCTTTTTTCAAAACCTTTGAG
* *
7777822 TATCTTCTTT-AAAACTTTTGAG
1 TATCTTTTTTCAAAACCTTTGAG
*
7777844 TATCTTTTTTCAAAACCTTTGGG
1 TATCTTTTTTCAAAACCTTTGAG
*
7777867 TATTTTTTTTCAAAAACCTTT
1 TATCTTTTTTC-AAAACCTTT
7777888 AGGTATCATC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
22 18 0.32
23 29 0.52
24 9 0.16
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (23 bp):
TATCTTTTTTCAAAACCTTTGAG
Found at i:7777875 original size:24 final size:24
Alignment explanation
Indices: 7777843--7777893 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7777833 AAACTTTTGA
* *
7777843 GTATCTTTTTTC-AAAACCTTTGG
1 GTATTTTTTTTCAAAAACCTTTAG
7777866 GTATTTTTTTTCAAAAACCTTTAG
1 GTATTTTTTTTCAAAAACCTTTAG
7777890 GTAT
1 GTAT
7777894 CATCTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.49
Consensus pattern (24 bp):
GTATTTTTTTTCAAAAACCTTTAG
Found at i:7777911 original size:23 final size:22
Alignment explanation
Indices: 7777821--7778151 Score: 97
Period size: 23 Copynumber: 14.6 Consensus size: 22
7777811 AAACCTTCAA
*
7777821 GTATCTTCTTTAAAACTTTT-G
1 GTATCATCTTTAAAACTTTTAG
* * * *
7777842 AGTATCTTTTTTCAAAACCTTTGG
1 -GTATCATCTTT-AAAACTTTTAG
** * *
7777866 GTATTTTTTTTCAAAAACCTTTAG
1 GTATCATCTTT--AAAACTTTTAG
7777890 GTATCATCTTTAAAAACTTTTAG
1 GTATCATCTTT-AAAACTTTTAG
* ** * *
7777913 GTGTCATCTCAAAAAACCTTCAG
1 GTATCATCT-TTAAAACTTTTAG
*
7777936 GTATCATCTTTAAAACTTCT-G
1 GTATCATCTTTAAAACTTTTAG
* *
7777957 GTTATAATCTTTAAAAC-TTTCG
1 G-TATCATCTTTAAAACTTTTAG
* *
7777979 AGTATCTTTTTTAAAACTTTT-G
1 -GTATCATCTTTAAAACTTTTAG
* * *
7778001 AATATC-TTTTTCAAAAAATCTTTAG
1 -GTATCATCTTT--AAAACT-TTTAG
* *
7778026 GTATCTTCTTTCTAAAACTTCT-G
1 GTATCATC-TT-TAAAACTTTTAG
* * * * *
7778049 AGCA-CATCTTT-TAACCTCTAA
1 -GTATCATCTTTAAAACTTTTAG
*
7778070 GTATCATCTTTAAAACCTTTAG
1 GTATCATCTTTAAAACTTTTAG
* * *
7778092 GTATCTTTTTTTGAAAA-TCTCTAG
1 GTATC-ATCTTT-AAAACT-TTTAG
*
7778116 GTATCTCATCTTTAAAACTTTTGG
1 GTA--TCATCTTTAAAACTTTTAG
*
7778140 GTA-CATTTTTAA
1 GTATCATCTTTAA
7778152 GTATATTGTC
Statistics
Matches: 235, Mismatches: 49, Indels: 51
0.70 0.15 0.15
Matches are distributed among these distances:
20 8 0.03
21 25 0.11
22 63 0.27
23 71 0.30
24 51 0.22
25 12 0.05
26 4 0.02
27 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (22 bp):
GTATCATCTTTAAAACTTTTAG
Found at i:7778095 original size:22 final size:22
Alignment explanation
Indices: 7777810--7778151 Score: 103
Period size: 22 Copynumber: 15.1 Consensus size: 22
7777800 ATCTTTTTTG
* * *
7777810 AAAACCTTCAAGTATCTTCTTT
1 AAAACCTTTAGGTATCATCTTT
* * *
7777832 AAAA-CTTTTGAGTATCTTTTTT
1 AAAACCTTTAG-GTATCATCTTT
* ** *
7777854 CAAAACCTTTGGGTATTTTTTTT
1 -AAAACCTTTAGGTATCATCTTT
7777877 CAAAAACCTTTAGGTATCATCTTT
1 --AAAACCTTTAGGTATCATCTTT
* * **
7777901 AAAAACTTTTAGGTGTCATCTCAA
1 -AAAACCTTTAGGTATCATCT-TT
*
7777925 AAAACCTTCAGGTATCATCTTT
1 AAAACCTTTAGGTATCATCTTT
*
7777947 AAAA-CTTCT-GGTTATAATCTTT
1 AAAACCTT-TAGG-TATCATCTTT
* * *
7777969 AAAA-CTTTCGAGTATCTTTTTT
1 AAAACCTTTAG-GTATCATCTTT
* * *
7777991 AAAA-CTTTTGAATATC-TTTTT
1 AAAACCTTTAG-GTATCATCTTT
* *
7778012 CAAAAAATCTTTAGGTATCTTCTTTCT
1 ---AAAACCTTTAGGTATCATC-TT-T
*
7778039 AAAA-CTTCT-GAGCA-CATCTTT
1 AAAACCTT-TAG-GTATCATCTTT
* * *
7778060 -TAACCTCTAAGTATCATCTTT
1 AAAACCTTTAGGTATCATCTTT
* *
7778081 AAAACCTTTAGGTATCTTTTTTT
1 AAAACCTTTAGGTATC-ATCTTT
* *
7778104 GAAAATCTCTAGGTATCTCATCTTT
1 -AAAACCTTTAGGTA--TCATCTTT
* * *
7778129 AAAACTTTTGGGTA-CATTTTT
1 AAAACCTTTAGGTATCATCTTT
7778150 AA
1 AA
7778152 GTATATTGTC
Statistics
Matches: 244, Mismatches: 50, Indels: 53
0.70 0.14 0.15
Matches are distributed among these distances:
20 5 0.02
21 32 0.13
22 70 0.29
23 62 0.25
24 60 0.25
25 10 0.04
26 4 0.02
27 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.44
Consensus pattern (22 bp):
AAAACCTTTAGGTATCATCTTT
Found at i:7778132 original size:24 final size:24
Alignment explanation
Indices: 7778053--7778133 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
7778043 CTTCTGAGCA
* *
7778053 CATCTTT-TAACCTCTAAGTA--T
1 CATCTTTAAAACCTCTAGGTATCT
*
7778074 CATCTTTAAAACCTTTAGGTATCT
1 CATCTTTAAAACCTCTAGGTATCT
* * *
7778098 -TTTTTTGAAAATCTCTAGGTATCT
1 CATCTTT-AAAACCTCTAGGTATCT
7778122 CATCTTTAAAAC
1 CATCTTTAAAAC
7778134 TTTTGGGTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
21 7 0.16
22 10 0.22
23 4 0.09
24 20 0.44
25 4 0.09
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (24 bp):
CATCTTTAAAACCTCTAGGTATCT
Found at i:7779874 original size:6 final size:6
Alignment explanation
Indices: 7779865--7779901 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
7779855 GATTAAATAG
7779865 AAATTA AAATTA AAATTAA AAATTAA AAATTA AAATT
1 AAATTA AAATTA AAATT-A AAATT-A AAATTA AAATT
7779902 GATAAATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 17 0.57
7 13 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:7779888 original size:7 final size:7
Alignment explanation
Indices: 7779865--7779899 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
7779855 GATTAAATAG
7779865 AAATT-A
1 AAATTAA
7779871 AAATT-A
1 AAATTAA
7779877 AAATTAA
1 AAATTAA
7779884 AAATTAA
1 AAATTAA
7779891 AAATTAA
1 AAATTAA
7779898 AA
1 AA
7779900 TTGATAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 11 0.39
7 17 0.61
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATTAA
Found at i:7779888 original size:13 final size:12
Alignment explanation
Indices: 7779865--7779901 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
7779855 GATTAAATAG
7779865 AAATTAAAATTA
1 AAATTAAAATTA
7779877 AAATTAAAAATTAA
1 AAATT-AAAATT-A
7779891 AAATTAAAATT
1 AAATTAAAATT
7779902 GATAAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 12 0.52
14 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTAAAATTA
Found at i:7782918 original size:25 final size:25
Alignment explanation
Indices: 7782908--7782975 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
7782898 ATTAATTTTA
*
7782908 TAATTATAATTATAATAATTATTTT
1 TAATCATAATTATAATAATTATTTT
7782933 TAATCATAATTATAATAATTATTTT
1 TAATCATAATTATAATAATTATTTT
7782958 TAATCATAATTATAATAA
1 TAATCATAATTATAATAA
7782976 ATTTTATTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (25 bp):
TAATCATAATTATAATAATTATTTT
Found at i:7785547 original size:24 final size:23
Alignment explanation
Indices: 7785520--7785594 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 23
7785510 TGTTTGAGTG
*
7785520 TTTTAGCATTCTAGGGTTTTAAGA
1 TTTTAGGATT-TAGGGTTTTAAGA
*
7785544 TTTT-GGAGTTTTAGGGTTTTGA-A
1 TTTTAGGA--TTTAGGGTTTTAAGA
* *
7785567 TTTTAGGATTTCAAGGTTTTAAGG
1 TTTTAGGATTT-AGGGTTTTAAGA
7785591 TTTT
1 TTTT
7785595 GAAATTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
22 3 0.07
23 15 0.37
24 21 0.51
25 2 0.05
ACGTcount: A:0.21, C:0.04, G:0.24, T:0.51
Consensus pattern (23 bp):
TTTTAGGATTTAGGGTTTTAAGA
Found at i:7788070 original size:53 final size:53
Alignment explanation
Indices: 7788008--7788119 Score: 199
Period size: 53 Copynumber: 2.1 Consensus size: 53
7787998 ATATTTTGCG
* *
7788008 TTAGAAAAAATGTCTTCATTTTAAATATTATAATGGTTAATGGTAATATAATT
1 TTAGAAAAAATGTCTTCATTTCAAATATTATAATGGTTAATCGTAATATAATT
7788061 TTAGAAAAAATGTCTTCATTTCAAATATTATAATGGTTAATCGTAATATAATT
1 TTAGAAAAAATGTCTTCATTTCAAATATTATAATGGTTAATCGTAATATAATT
7788114 TT-GAAA
1 TTAGAAA
7788120 TCATTTAGGG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 4 0.07
53 53 0.93
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (53 bp):
TTAGAAAAAATGTCTTCATTTCAAATATTATAATGGTTAATCGTAATATAATT
Found at i:7788156 original size:69 final size:69
Alignment explanation
Indices: 7788076--7788212 Score: 204
Period size: 69 Copynumber: 2.0 Consensus size: 69
7788066 AAAAATGTCT
*
7788076 TCATTTCAAATATTATAATGGTTAATCG-TAATATAATTTTGAAATCATTTAGGGTCTTTAGAAG
1 TCATTTCAAATATTATAATGGTTAAT-GTTAATATAATTTTGAAATCATTTAGGCTCTTTAGAAG
7788140 AGGTA
65 AGGTA
* * * * *
7788145 TCATTTTAAATATTATAATGGTTAGTGTTAATATAATTTTGAAATCTTTTAGGCTTTTTAGAGGA
1 TCATTTCAAATATTATAATGGTTAATGTTAATATAATTTTGAAATCATTTAGGCTCTTTAGAAGA
7788210 GGT
66 GGT
7788213 TAGCGGGCAG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
68 1 0.02
69 60 0.98
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.44
Consensus pattern (69 bp):
TCATTTCAAATATTATAATGGTTAATGTTAATATAATTTTGAAATCATTTAGGCTCTTTAGAAGA
GGTA
Found at i:7789825 original size:87 final size:87
Alignment explanation
Indices: 7789679--7789848 Score: 277
Period size: 87 Copynumber: 2.0 Consensus size: 87
7789669 ACATTTCTCC
* * *
7789679 CTTTTCACATACAACTAGTGGTCTTGTAATCTTCGAAGCACCTGACGTAAGTGTTCTTGATGTTC
1 CTTTTCACATACAACCAGTGGTCTTGTAATCTTCGAAGCACCCGACGCAAGTGTTCTTGATGTTC
* *
7789744 TTTCAGAGTAGAGCTATACTCT
66 TTCCAGAGTACAGCTATACTCT
*
7789766 CTTTTCACATACAACCGGTGGTCTTGTAATCTTCGAAGCACCCGACGCAAGTGTTCTTGATGTTC
1 CTTTTCACATACAACCAGTGGTCTTGTAATCTTCGAAGCACCCGACGCAAGTGTTCTTGATGTTC
*
7789831 TTCCCGAGTACAGCTATA
66 TTCCAGAGTACAGCTATA
7789849 TAGTTGTACT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (87 bp):
CTTTTCACATACAACCAGTGGTCTTGTAATCTTCGAAGCACCCGACGCAAGTGTTCTTGATGTTC
TTCCAGAGTACAGCTATACTCT
Found at i:7793157 original size:10 final size:10
Alignment explanation
Indices: 7793135--7793169 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
7793125 ACACATTTTG
7793135 TTATTGATT-T
1 TTATT-ATTAT
7793145 TTATTATTAT
1 TTATTATTAT
7793155 TTATTATTAT
1 TTATTATTAT
7793165 TTATT
1 TTATT
7793170 TAAATTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 3 0.12
10 21 0.88
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (10 bp):
TTATTATTAT
Found at i:7794321 original size:42 final size:42
Alignment explanation
Indices: 7794260--7794395 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 42
7794250 TTTAAATTCG
* * * *
7794260 GATATCACCACTGAAAAGATGAAATTCAAACCTTAACACTCA
1 GATATAACCACTGAAAAGATGCAATTCAAACATTAATACTCA
* * * *
7794302 GATATAATCACTGACAAGATGCAATTCAAACATTGATATTCA
1 GATATAACCACTGAAAAGATGCAATTCAAACATTAATACTCA
* * *
7794344 GATATCACCAC-CAAGAAGATGCAATTCAAACTTTAATACTCA
1 GATATAACCACTGAA-AAGATGCAATTCAAACATTAATACTCA
*
7794386 GATATCACCA
1 GATATAACCA
7794396 TCGAAGGAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 1 0.01
42 77 0.99
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.24
Consensus pattern (42 bp):
GATATAACCACTGAAAAGATGCAATTCAAACATTAATACTCA
Found at i:7794557 original size:99 final size:99
Alignment explanation
Indices: 7794399--7794972 Score: 519
Period size: 99 Copynumber: 5.7 Consensus size: 99
7794389 ATCACCATCG
* ** * * * * *
7794399 AAGGAAACTCAAATATCATCATTAAGAAAATACAAATCAAGCTTTAACACTCGAATATCACCTCC
1 AAGGAAACTCGAATATCATCATCGAGCAAATGCAATTCAAGCTTTAACACTCGGATATCACCACC
7794464 GAGAATATGCAAATGACTTCGGATATCGCCACTA
66 GAGAATATGCAAATGACTTCGGATATCGCCACTA
* * *
7794498 AAGGAAACTCGAATATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTTGGATATCACCATC
1 AAGGAAACTCGAATATCATCATCGAGCAAATGCAATTCAAGCTTTAACACTCGGATATCACCACC
* * * * *
7794563 GAGAAGATGCAAATAATTTTAACACTTGGATATCACCACCA
66 GAGAATATGCAAATGA-CTT----C--GGATATCGCCACTA
* * ** ** * * *
7794604 AAGAAAACTCGAATACCATCATAAAAAAAATGTAAATT-AAGCTTTAACACTAGAATATCACCAC
1 AAGGAAACTCGAATATCATCATCGAGCAAATG-CAATTCAAGCTTTAACACTCGGATATCACCAC
* * * *
7794668 CGAGAATATGTAAATGACTTCGGATGTCGTCA-TCG
65 CGAGAATATGCAAATGACTTCGGATATCGCCACT-A
* *
7794703 AAGGAAACTCGAATATCATCATTGAGCAAATGCTA-TCTAAGCTTTAACACTCGGATATCACCAC
1 AAGGAAACTCGAATATCATCATCGAGCAAATGCAATTC-AAGCTTTAACACTCGGATATCACCAC
* * *
7794767 CGAAAATATGCAAATGACTTTGGATATCGCCACCA
65 CGAGAATATGCAAATGACTTCGGATATCGCCACTA
* ** * *
7794802 AAGAAAACTTAAATATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTCAGATATCACCACC
1 AAGGAAACTCGAATATCATCATCGAGCAAATGCAATTCAAGCTTTAACACTCGGATATCACCACC
* * * * *
7794867 AAGAATATACAAATGATTTCGGATATTGCCACTG
66 GAGAATATGCAAATGACTTCGGATATCGCCACTA
* * * * *
7794901 AAGGAAACTAATCTCAAACATCACCATCGA-CAAAATGCAATCCATA-CTTTAATACTCGGATAT
1 AAGG--A--AA-CTCGAATATCATCATCGAGC-AAATGCAATTCA-AGCTTTAACACTCGGATAT
7794964 CACCACCGA
59 CACCACCGA
7794973 AACCTTTGAA
Statistics
Matches: 380, Mismatches: 75, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
97 1 0.00
98 1 0.00
99 237 0.62
100 4 0.01
101 2 0.01
103 3 0.01
104 51 0.13
105 3 0.01
106 74 0.19
107 4 0.01
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (99 bp):
AAGGAAACTCGAATATCATCATCGAGCAAATGCAATTCAAGCTTTAACACTCGGATATCACCACC
GAGAATATGCAAATGACTTCGGATATCGCCACTA
Found at i:7794595 original size:40 final size:42
Alignment explanation
Indices: 7794510--7794600 Score: 134
Period size: 40 Copynumber: 2.2 Consensus size: 42
7794500 GGAAACTCGA
*
7794510 ATATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTTGG
1 ATATCACCATCGAGCAAATGCAAATCAAGCTTTAACACTTGG
*
7794552 ATATCACCATCGAG-AAGATGCAAAT-AA-TTTTAACACTTGG
1 ATATCACCATCGAGCAA-ATGCAAATCAAGCTTTAACACTTGG
7794592 ATATCACCA
1 ATATCACCA
7794601 CCAAAGAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 21 0.46
41 4 0.09
42 21 0.46
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.26
Consensus pattern (42 bp):
ATATCACCATCGAGCAAATGCAAATCAAGCTTTAACACTTGG
Found at i:7794674 original size:205 final size:203
Alignment explanation
Indices: 7794344--7794972 Score: 632
Period size: 205 Copynumber: 3.1 Consensus size: 203
7794334 TTGATATTCA
* * * ** * * *
7794344 GATATCACCACCAAGAAGATGCAATTCAAACTTTAATACTCAGATATCACCATCGAAGGAAACTC
1 GATATCACCACCGAGAAGATGCAAAT--AA-TTTAACACTTGGATATCACCACCAAAGAAAACTC
* * * * *
7794409 AAATATCATCATTAAGAAAATACAAATCAAGCTTTAACACTCGAATATCACCTCCGAGAATATGC
63 AAATATCATCATAAAGAAAAT-GAAATTAAGCTTTAACACTAGAATATCACCACCGAGAATATGC
*
7794474 AAATGACTTCGGATATCGCCACTAAAGGAAACTCGAATATCACCATCGAGCAAATGCAAT-TCAA
127 AAATGACTTCGGATATCGCCACTGAAGGAAACTCGAATATCACCATCGAGCAAATGCAATCT-AA
*
7794538 GCTTTAACACTTG
191 GCTTTAACACTCG
* *
7794551 GATATCACCATCGAGAAGATGCAAATAATTTTAACACTTGGATATCACCACCAAAGAAAACTCGA
1 GATATCACCACCGAGAAGATGCAAATAA-TTTAACACTTGGATATCACCACCAAAGAAAACTCAA
* * *
7794616 ATACCATCATAAAAAAAATGTAAATTAAGCTTTAACACTAGAATATCACCACCGAGAATATGTAA
65 ATATCATCATAAAGAAAATG-AAATTAAGCTTTAACACTAGAATATCACCACCGAGAATATGCAA
* * * * *
7794681 ATGACTTCGGATGTCGTCA-TCGAAGGAAACTCGAATATCATCATTGAGCAAATGCTATCTAAGC
129 ATGACTTCGGATATCGCCACT-GAAGGAAACTCGAATATCACCATCGAGCAAATGCAATCTAAGC
7794745 TTTAACACTCG
193 TTTAACACTCG
* * * * * *
7794756 GATATCACCACCGAAAATATGC--A-AA--TGAC-TTTGGATATCGCCACCAAAGAAAACTTAAA
1 GATATCACCACCGAGAAGATGCAAATAATTTAACACTTGGATATCACCACCAAAGAAAACTCAAA
* ** * * * *
7794815 TATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTCAG-ATATCACCACCAAGAATATACAA
66 TATCATCATAAAGAAAATGAAATT-AAGCTTTAACACT-AGAATATCACCACCGAGAATATGCAA
* * * *
7794879 ATGATTTCGGATATTGCCACTGAAGGAAACTAATCTCAAACATCACCATCGA-CAAAATGCAATC
129 ATGACTTCGGATATCGCCACTGAAGG--A--AA-CTCGAATATCACCATCGAGC-AAATGCAATC
* *
7794943 CATA-CTTTAATACTCG
188 TA-AGCTTTAACACTCG
7794959 GATATCACCACCGA
1 GATATCACCACCGA
7794973 AACCTTTGAA
Statistics
Matches: 354, Mismatches: 55, Indels: 30
0.81 0.13 0.07
Matches are distributed among these distances:
197 4 0.01
198 92 0.26
199 6 0.02
200 1 0.00
202 5 0.01
203 50 0.14
204 2 0.01
205 170 0.48
206 1 0.00
207 23 0.06
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.24
Consensus pattern (203 bp):
GATATCACCACCGAGAAGATGCAAATAATTTAACACTTGGATATCACCACCAAAGAAAACTCAAA
TATCATCATAAAGAAAATGAAATTAAGCTTTAACACTAGAATATCACCACCGAGAATATGCAAAT
GACTTCGGATATCGCCACTGAAGGAAACTCGAATATCACCATCGAGCAAATGCAATCTAAGCTTT
AACACTCG
Found at i:7795250 original size:34 final size:34
Alignment explanation
Indices: 7795184--7795279 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 34
7795174 ACACCATTAT
* * * *
7795184 GATGCAAATGAAATGCAAATGTTTTTTCTTAAATA
1 GATGCACATGAAATGAAAATATCTTTTCTTAAA-A
* *
7795219 -ATGCTCATGAGATGAAAATATCTTTTCTTAAAA
1 GATGCACATGAAATGAAAATATCTTTTCTTAAAA
* *
7795252 GATGCACATGAAATGCAAATGTCTTTTC
1 GATGCACATGAAATGAAAATATCTTTTC
7795280 CAAAAATACT
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
33 1 0.02
34 49 0.98
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (34 bp):
GATGCACATGAAATGAAAATATCTTTTCTTAAAA
Found at i:7800240 original size:17 final size:17
Alignment explanation
Indices: 7800218--7800257 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
7800208 GTGTGAAATT
7800218 TTGTTTTTGTTTTTGAC
1 TTGTTTTTGTTTTTGAC
*
7800235 TTG-TTTTGTTTTTTAC
1 TTGTTTTTGTTTTTGAC
7800251 TT-TTTTT
1 TTGTTTTT
7800258 TATTGAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.05, C:0.05, G:0.12, T:0.78
Consensus pattern (17 bp):
TTGTTTTTGTTTTTGAC
Found at i:7803320 original size:6 final size:7
Alignment explanation
Indices: 7803303--7803327 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7803293 GAAATTTAAT
7803303 TTTTTTA
1 TTTTTTA
7803310 TTTTTTA
1 TTTTTTA
7803317 TTTTTTA
1 TTTTTTA
7803324 TTTT
1 TTTT
7803328 AATATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:7804232 original size:12 final size:13
Alignment explanation
Indices: 7804215--7804244 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7804205 CATATTTATA
7804215 AAAAAAAAAAG-G
1 AAAAAAAAAAGAG
7804227 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
7804240 AAAAA
1 AAAAA
7804245 TCTCCCATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAG
Found at i:7810094 original size:2 final size:2
Alignment explanation
Indices: 7810089--7810133 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
7810079 TGTGTGTGTG
* * * *
7810089 TC TC TC TC TC TG TC TG TC TG TC TG TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7810131 TC T
1 TC T
7810134 ATATATATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.40, G:0.09, T:0.51
Consensus pattern (2 bp):
TC
Done.