Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 33 of 138
Found at i:7810112 original size:12 final size:12
Alignment explanation
Indices: 7810087--7810133 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
7810077 TGTGTGTGTG
7810087 TGTCTCTCTCTC
1 TGTCTCTCTCTC
* *
7810099 TGTCTGTCTGTC
1 TGTCTCTCTCTC
7810111 TGTCTCTCTCTC
1 TGTCTCTCTCTC
*
7810123 TCTCTCTCTCT
1 TGTCTCTCTCT
7810134 ATATATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.00, C:0.38, G:0.11, T:0.51
Consensus pattern (12 bp):
TGTCTCTCTCTC
Found at i:7812224 original size:13 final size:12
Alignment explanation
Indices: 7812210--7812241 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
7812200 TTCATATTCT
7812210 TTCTTTTTTTTC
1 TTCTTTTTTTTC
7812222 TT-TTTTTTTTC
1 TTCTTTTTTTTC
7812233 TTCTTTTTT
1 TTCTTTTTT
7812242 GGATAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TTCTTTTTTTTC
Found at i:7818810 original size:29 final size:29
Alignment explanation
Indices: 7818768--7818827 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
7818758 TTTTTACCAT
7818768 AGAATTTAATTTGAATCTAAAACAGCTGC
1 AGAATTTAATTTGAATCTAAAACAGCTGC
7818797 AGAATTTAATTTGAATCTAAAACAGCTGC
1 AGAATTTAATTTGAATCTAAAACAGCTGC
7818826 AG
1 AG
7818828 TTTTTTCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (29 bp):
AGAATTTAATTTGAATCTAAAACAGCTGC
Found at i:7828041 original size:15 final size:16
Alignment explanation
Indices: 7828008--7828057 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
7827998 TAATATTATC
*
7828008 TTTTTTAACTA-ATTCA
1 TTTTTTAAATATATT-A
*
7828024 TTTTTTATAT-TATTA
1 TTTTTTAAATATATTA
7828039 -TTTTTAAATATATTA
1 TTTTTTAAATATATTA
7828054 TTTT
1 TTTT
7828058 ATGAGATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 8 0.29
15 6 0.21
16 14 0.50
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTAAATATATTA
Found at i:7828042 original size:14 final size:15
Alignment explanation
Indices: 7828025--7828057 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7828015 ACTAATTCAT
*
7828025 TTTTTATAT-TATTA
1 TTTTTAAATATATTA
7828039 TTTTTAAATATATTA
1 TTTTTAAATATATTA
7828054 TTTT
1 TTTT
7828058 ATGAGATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTAAATATATTA
Found at i:7828057 original size:30 final size:30
Alignment explanation
Indices: 7828000--7828057 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
7827990 TTGGTAATTA
*
7828000 ATATTATCTTTTTTAACTAATTCATTTTTT
1 ATATTATCTTTTTTAAATAATTCATTTTTT
7828030 ATATTAT-TATTTTTAAATATATT-ATTTT
1 ATATTATCT-TTTTTAAATA-ATTCATTTT
7828058 ATGAGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 1 0.04
30 21 0.84
31 3 0.12
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (30 bp):
ATATTATCTTTTTTAAATAATTCATTTTTT
Found at i:7829079 original size:24 final size:24
Alignment explanation
Indices: 7829012--7829098 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 24
7829002 TCTTACATAT
* *
7829012 ATATATTTTTA-TATATT-TAATAA
1 ATATATTTTTATTA-ATTAAAATTA
*
7829035 ATAAATTTTTATTAAATATTATAAATT-
1 ATATATTTTTATT--A-ATTA-AAATTA
7829062 AT-TATTTTATATTAATTAAAATTA
1 ATATATTTT-TATTAATTAAAATTA
7829086 ATATATTTTTATT
1 ATATATTTTTATT
7829099 GAAAAAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
23 15 0.29
24 11 0.21
25 7 0.13
26 10 0.19
27 6 0.12
28 3 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
ATATATTTTTATTAATTAAAATTA
Found at i:7829301 original size:17 final size:18
Alignment explanation
Indices: 7829271--7829306 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7829261 TAAAATATTG
7829271 ATATGAATACAAAAATAA
1 ATATGAATACAAAAATAA
*
7829289 ATAT-AATATAAAAATAA
1 ATATGAATACAAAAATAA
7829306 A
1 A
7829307 AAATGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (18 bp):
ATATGAATACAAAAATAA
Found at i:7834526 original size:93 final size:93
Alignment explanation
Indices: 7834365--7834535 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7834355 ATAATTATGG
*
7834365 ACATGGTCACGCCCTCATTAAAAATTTTACTACCACGCATAATTAAGATCTATAAATTTATTAAA
1 ACATGGTCACGCCCTCATTAAAAATTTTACTACCACGCATAATTAAGACCTATAAATTTATTAAA
7834430 ATAAATAAATAAATAAACTTCAATAGCA
66 ATAAATAAATAAATAAACTTCAATAGCA
* *
7834458 ACATGGTCACGCCCTCATTAAAAATTTTATTACCACGCATAATTAAGACCTATAAATTTATTACA
1 ACATGGTCACGCCCTCATTAAAAATTTTACTACCACGCATAATTAAGACCTATAAATTTATTAAA
7834523 ATAAATAAATAAA
66 ATAAATAAATAAA
7834536 CTTCAATAAC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.30
Consensus pattern (93 bp):
ACATGGTCACGCCCTCATTAAAAATTTTACTACCACGCATAATTAAGACCTATAAATTTATTAAA
ATAAATAAATAAATAAACTTCAATAGCA
Found at i:7837067 original size:36 final size:36
Alignment explanation
Indices: 7837026--7837112 Score: 92
Period size: 36 Copynumber: 2.4 Consensus size: 36
7837016 ATAAAATTAA
7837026 TATAATATAAGA-TTAATATTATAAATAA-TTTTAA-AT
1 TATAATATAAGATTTAA-ATT-TAAA-AATTTTTAATAT
* *
7837062 TATAATAAAATATTTAAATTTAAAAATTTTTAATAT
1 TATAATATAAGATTTAAATTTAAAAATTTTTAATAT
*
7837098 TATATTATAA-ATTTA
1 TATAATATAAGATTTA
7837113 TTAAGTAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
34 2 0.05
35 15 0.34
36 23 0.52
37 4 0.09
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (36 bp):
TATAATATAAGATTTAAATTTAAAAATTTTTAATAT
Found at i:7837981 original size:23 final size:23
Alignment explanation
Indices: 7837938--7837982 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
7837928 ATATTAATAA
*
7837938 TTTTATAATTAAATTGTAAAATT
1 TTTTATAATTAAATTATAAAATT
7837961 TTTTA-AATTAAATTATCAAAAT
1 TTTTATAATTAAATTAT-AAAAT
7837983 AAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTATAATTAAATTATAAAATT
Found at i:7839108 original size:7 final size:7
Alignment explanation
Indices: 7839096--7839129 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7839086 AACATTTAAT
7839096 AAATTTA
1 AAATTTA
7839103 AAATTTA
1 AAATTTA
7839110 AAATTTA
1 AAATTTA
*
7839117 TAATTTA
1 AAATTTA
*
7839124 TAATTT
1 AAATTT
7839130 TTTGAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AAATTTA
Found at i:7841567 original size:10 final size:10
Alignment explanation
Indices: 7841552--7841584 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
7841542 TACATTGTCA
7841552 CTTCTATTCC
1 CTTCTATTCC
7841562 CTTCTATTCC
1 CTTCTATTCC
7841572 CTTCTATTCC
1 CTTCTATTCC
7841582 CTT
1 CTT
7841585 GTTGTCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.09, C:0.39, G:0.00, T:0.52
Consensus pattern (10 bp):
CTTCTATTCC
Found at i:7841596 original size:20 final size:20
Alignment explanation
Indices: 7841546--7841596 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7841536 AATGCTTACA
7841546 TTGTCACTTCTATTCCCTTC
1 TTGTCACTTCTATTCCCTTC
* *
7841566 TAT-TCCCTTCTATTCCCTTG
1 T-TGTCACTTCTATTCCCTTC
*
7841586 TTGTCAATTCT
1 TTGTCACTTCT
7841597 TGAAATTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.12, C:0.31, G:0.06, T:0.51
Consensus pattern (20 bp):
TTGTCACTTCTATTCCCTTC
Found at i:7859341 original size:40 final size:40
Alignment explanation
Indices: 7859290--7859383 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
7859280 AAGAGGAAGA
* * *
7859290 GATATGACATTCAATTTCAAAAGGGCAACCAAGGAAAAAG
1 GATATGTCATTCAATTTCAAAAAGACAACCAAGGAAAAAG
* *
7859330 GATGTGTCATTCAATTTCAAAAAGACAACCAAGGAAAAGG
1 GATATGTCATTCAATTTCAAAAAGACAACCAAGGAAAAAG
7859370 GATATGTCATTCAA
1 GATATGTCATTCAA
7859384 CCTTGATAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (40 bp):
GATATGTCATTCAATTTCAAAAAGACAACCAAGGAAAAAG
Found at i:7863136 original size:52 final size:52
Alignment explanation
Indices: 7863074--7863177 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
7863064 AAGATAAATT
* *
7863074 TTGGTCTACAAAAAATAGGTTGGGGCTGAAAGTTAGTTACGTGTGAAGAAGA
1 TTGGTCTACAAAAAATAGGTTAGAGCTGAAAGTTAGTTACGTGTGAAGAAGA
* * ** * *
7863126 TTGGTTTACAAAAACTAGGTTAGATTTGAGAGTTAGTTACGTGTGGAGAAGA
1 TTGGTCTACAAAAAATAGGTTAGAGCTGAAAGTTAGTTACGTGTGAAGAAGA
7863178 ATTAGCACCC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (52 bp):
TTGGTCTACAAAAAATAGGTTAGAGCTGAAAGTTAGTTACGTGTGAAGAAGA
Found at i:7864127 original size:15 final size:15
Alignment explanation
Indices: 7864095--7864175 Score: 66
Period size: 15 Copynumber: 5.6 Consensus size: 15
7864085 GGTTTTAAGA
*
7864095 TTAGGGTTTCGAGATT
1 TTAGGGTTTTG-GATT
7864111 TT-GGAGTTTTGGATT
1 TTAGG-GTTTTGGATT
7864126 TTAGGGTTTTGG--T
1 TTAGGGTTTTGGATT
* *
7864139 TT-GAGTTTTAGGGTT
1 TTAGGGTTTT-GGATT
7864154 TTAGGG-TTTGG-TT
1 TTAGGGTTTTGGATT
7864167 TTAGGGTTT
1 TTAGGGTTT
7864176 AGAAGGTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
12 6 0.11
13 13 0.24
14 4 0.07
15 21 0.38
16 11 0.20
ACGTcount: A:0.12, C:0.01, G:0.35, T:0.52
Consensus pattern (15 bp):
TTAGGGTTTTGGATT
Found at i:7864145 original size:27 final size:27
Alignment explanation
Indices: 7864114--7864167 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
7864104 CGAGATTTTG
7864114 GAGTTTT-GGATTTTAGGGTTTTGGTTT
1 GAGTTTTAGGATTTTAGGG-TTTGGTTT
*
7864141 GAGTTTTAGGGTTTTAGGGTTTGGTTT
1 GAGTTTTAGGATTTTAGGGTTTGGTTT
7864168 TAGGGTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.11, C:0.00, G:0.35, T:0.54
Consensus pattern (27 bp):
GAGTTTTAGGATTTTAGGGTTTGGTTT
Found at i:7864169 original size:21 final size:19
Alignment explanation
Indices: 7864118--7864175 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 19
7864108 ATTTTGGAGT
7864118 TTTGGATTTTAGGGTTTTGG
1 TTTGG-TTTTAGGGTTTTGG
7864138 TTTGAGTTTTAGGGTTTTAGGG
1 TTTG-GTTTTAGGGTTTT--GG
7864160 TTTGGTTTTAGGGTTT
1 TTTGGTTTTAGGGTTT
7864176 AGAAGGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
20 16 0.46
21 13 0.37
22 6 0.17
ACGTcount: A:0.10, C:0.00, G:0.34, T:0.55
Consensus pattern (19 bp):
TTTGGTTTTAGGGTTTTGG
Found at i:7864176 original size:28 final size:28
Alignment explanation
Indices: 7864124--7864196 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
7864114 GAGTTTTGGA
*
7864124 TTTTAGGGTTTTGGTTTGAGTTTTAGGG
1 TTTTAGGGTTTTGGTTTGAGGTTTAGGG
*
7864152 TTTTAGGG-TTTGGTTTTAGGGTTTAGAAGG
1 TTTTAGGGTTTTGGTTTGA-GGTTTAG--GG
*
7864182 TTTTTGGGATTTTGG
1 TTTTAGGG-TTTTGG
7864197 GTTTAGAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 9 0.24
28 14 0.38
30 9 0.24
32 5 0.14
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (28 bp):
TTTTAGGGTTTTGGTTTGAGGTTTAGGG
Found at i:7864184 original size:22 final size:22
Alignment explanation
Indices: 7864124--7864175 Score: 83
Period size: 20 Copynumber: 2.5 Consensus size: 22
7864114 GAGTTTTGGA
7864124 TTTTAGGGTTTT--GGTTTGAG
1 TTTTAGGGTTTTAGGGTTTGAG
7864144 TTTTAGGGTTTTAGGGTTTG-G
1 TTTTAGGGTTTTAGGGTTTGAG
7864165 TTTTAGGGTTT
1 TTTTAGGGTTT
7864176 AGAAGGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.40
21 12 0.40
22 6 0.20
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.56
Consensus pattern (22 bp):
TTTTAGGGTTTTAGGGTTTGAG
Found at i:7864199 original size:25 final size:24
Alignment explanation
Indices: 7864165--7864225 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 24
7864155 TAGGGTTTGG
* *
7864165 TTTTAGGGTTTAGAAGGTTTTTGGGA
1 TTTT-GGGTTTAGAA-GATTTTGAGA
7864191 TTTTGGGTTTAGAAGATTTTGAGA
1 TTTTGGGTTTAGAAGATTTTGAGA
7864215 TTTTGAGGTTT
1 TTTTG-GGTTT
7864226 TGAGGGTCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 13 0.41
25 15 0.47
26 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (24 bp):
TTTTGGGTTTAGAAGATTTTGAGA
Found at i:7864382 original size:31 final size:31
Alignment explanation
Indices: 7864325--7864405 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
7864315 AAGGGTTTAG
* * *
7864325 TTTTAAGGTTTGAAGGG-TATATGATTTCTA
1 TTTTAAGGTTTAAAGGGTTTTATGATTTCGA
7864355 TTTTAAGGTTTAAAGGGTTTTATGATTTCGA
1 TTTTAAGGTTTAAAGGGTTTTATGATTTCGA
*
7864386 TTTT-AGGATTAAAAGGGTTT
1 TTTTAAGG-TTTAAAGGGTTT
7864406 AGGGTTTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
30 19 0.42
31 26 0.58
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.47
Consensus pattern (31 bp):
TTTTAAGGTTTAAAGGGTTTTATGATTTCGA
Found at i:7864749 original size:15 final size:15
Alignment explanation
Indices: 7864731--7864764 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7864721 TATTATTCTT
*
7864731 TTTATTTATTTATTA
1 TTTATTTAATTATTA
*
7864746 TTTATTTAATTATTG
1 TTTATTTAATTATTA
7864761 TTTA
1 TTTA
7864765 AAAAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTATTTAATTATTA
Found at i:7866645 original size:107 final size:106
Alignment explanation
Indices: 7866462--7866741 Score: 260
Period size: 106 Copynumber: 2.7 Consensus size: 106
7866452 AATGTTCCTC
* * * * * * *
7866462 ATACATTAGAGGTATTAAAACTTTAG-AAATTTAAAATATTTTGTTTTGAGGTCTTAAAGATTAT
1 ATACATTAAAGGCATTGAAACTTTAGAAAATTTAAAATGTTTTGCTTGGAGGTCTTAAAGATTGT
* ** * * * ***
7866526 ACCCGAAGGTCTTACA-AGTCTCAAAATCTTTGAATGTTTTTT
66 GCTTGAAAGTCTTA-AGA-TCTCAAAATCTTTAAATGGTCCAT
* * * *
7866568 CTATATTAAAGGCATTGAAACTTTTGAAAATTTAAAATGTTTTGCTTGGAAGTCTTAAAGATTGT
1 ATACATTAAAGGCATTGAAACTTTAGAAAATTTAAAATGTTTTGCTTGGAGGTCTTAAAGATTGT
* *
7866633 GCTTGAAAGTCTTAAGATTTCAAAATTTTTAAATGGTCCAT
66 GCTTGAAAGTCTTAAGATCTCAAAATCTTTAAATGGTCCAT
* * * ** * *
7866674 ATACATTAGAGGCGTTGAAAC-TTGGAAAATTTAAAATGTTTTGCCGGGAGGTCATAAGGATTGT
1 ATACATTAAAGGCATTGAAACTTTAGAAAATTTAAAATGTTTTGCTTGGAGGTCTTAAAGATTGT
7866738 GCTT
66 GCTT
7866742 AGAGGTCTTA
Statistics
Matches: 140, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
105 41 0.29
106 55 0.39
107 44 0.31
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (106 bp):
ATACATTAAAGGCATTGAAACTTTAGAAAATTTAAAATGTTTTGCTTGGAGGTCTTAAAGATTGT
GCTTGAAAGTCTTAAGATCTCAAAATCTTTAAATGGTCCAT
Found at i:7866651 original size:21 final size:22
Alignment explanation
Indices: 7866610--7866651 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7866600 TAAAATGTTT
*
7866610 TGCTTGGAAGTCTTAAAGATTG
1 TGCTTGAAAGTCTTAAAGATTG
7866632 TGCTTGAAAGTCTT-AAGATT
1 TGCTTGAAAGTCTTAAAGATT
7866652 TCAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (22 bp):
TGCTTGAAAGTCTTAAAGATTG
Found at i:7866886 original size:129 final size:127
Alignment explanation
Indices: 7866652--7866886 Score: 292
Period size: 129 Copynumber: 1.8 Consensus size: 127
7866642 TCTTAAGATT
* * *
7866652 TCAAAATTTTTAAATGGTCCATATACATTAGAGGCGTTGAAACTTGGAAAATTTAAAATGTTTTG
1 TCAAAATCTTTAAATGGTCCATATA-ATTAGAGGCGTTAAAACTTGGAAAATTTAAAATATTTTG
* * * ** * *
7866717 CCGGGAGGTCATAAGGATTGTGCTTAGAGGTCTTAGAGATTATACCCAAAGATCTTACAAATC
65 CCGGGAAGTCATAAAGATTATGCCCAGAGATCTTAAAGATTATACCCAAAGATCTTACAAATC
* * *
7866780 TCAAAATCTTTAAATGCTTCTCATAT-ATTAGAGGTGTTAAAACTTTTGAAAATTTAAAATATTT
1 TCAAAATCTTTAAATG-GTC-CATATAATTAGAGGCGTTAAAAC-TTGGAAAATTTAAAATATTT
* *
7866844 TGCCTGGAAGTCTTAAAGATTATGCCCAGAGATCTTAAAGATT
63 TGCCGGGAAGTCATAAAGATTATGCCCAGAGATCTTAAAGATT
7866887 TCAAAATCTT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
128 30 0.34
129 54 0.61
130 5 0.06
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (127 bp):
TCAAAATCTTTAAATGGTCCATATAATTAGAGGCGTTAAAACTTGGAAAATTTAAAATATTTTGC
CGGGAAGTCATAAAGATTATGCCCAGAGATCTTAAAGATTATACCCAAAGATCTTACAAATC
Found at i:7866994 original size:106 final size:105
Alignment explanation
Indices: 7866780--7867160 Score: 446
Period size: 106 Copynumber: 3.6 Consensus size: 105
7866770 CTTACAAATC
* * * *
7866780 TCAAAATCTTTAAATGCTTCTCATATATTAGAGGTGTTAAAACTTTTGAAAATTTAAAATATTTT
1 TCAAAATCTTTAAATGCTCCTCATACATTAGAGGCGTTGAAAC-TTTGAAAATTTAAAATATTTT
* * * * * *
7866845 GCCTGGAAGTCTTAAAGATTATGCCC-AGAGATCTTAAAGATT
65 ACATGGAGGTTTTAAAGATTGTGCCCGA-AGGTCTT-AAGATT
* * * *
7866887 TCAAAATCTTTGAATGCTCCTCATACATTAGAGGCATTGAAGCTTTGAAAATTTAAAATGTTTTA
1 TCAAAATCTTTAAATGCTCCTCATACATTAGAGGCGTTGAAACTTTGAAAATTTAAAATATTTTA
*
7866952 CATGGAGGTTTTAAAGATTGTGCCCGAAGGTCTTAGACATT
66 CATGGAGGTTTTAAAGATTGTGCCCGAAGGTCTTA-AGATT
* * * * *
7866993 TCAAAATCTTTGAATGCTCCTTATACATTAAAGGCGTTGAAACTTTGAAAATTTAAAATGCTTTG
1 TCAAAATCTTTAAATGCTCCTCATACATTAGAGGCGTTGAAACTTTGAAAATTTAAAAT-ATTTT
* * *
7867058 CCAT-GAGG-TTTAAAGATTGTGCCCGGACGTCTTAAGGATT
65 ACATGGAGGTTTTAAAGATTGTGCCCGAAGGTCTTAA-GATT
* * *
7867098 TCAAGATCTTTAAAT-CTCATCATACATTAGAGGCGTTGAAACTTTGAAACTTTAAAATATTTT
1 TCAAAATCTTTAAATGCTCCTCATACATTAGAGGCGTTGAAACTTTGAAAATTTAAAATATTTT
7867161 GCTTGAAGGT
Statistics
Matches: 237, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
103 3 0.01
104 40 0.17
105 41 0.17
106 110 0.46
107 43 0.18
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (105 bp):
TCAAAATCTTTAAATGCTCCTCATACATTAGAGGCGTTGAAACTTTGAAAATTTAAAATATTTTA
CATGGAGGTTTTAAAGATTGTGCCCGAAGGTCTTAAGATT
Found at i:7867046 original size:341 final size:340
Alignment explanation
Indices: 7866424--7867059 Score: 870
Period size: 341 Copynumber: 1.9 Consensus size: 340
7866414 ACAAAATTTT
* *
7866424 AAAGATCTTACAAATCTTGAAAACTTTGAATGTTCCTCATACATTAGAGGTATTAAAACTTTAGA
1 AAAGATCTTACAAATCTTCAAAACTTTAAATGTTCCTCATACATTAGAGGTATTAAAACTTTAGA
** * * *
7866489 AATTTAAAATATTTTGTTTTGAGGTCTTAAAGATTATACCCGAAGGTCTTACAAGTCTCAAAATC
66 AATTTAAAATATTTTGCCTGGAAGTCTTAAAGATTATACCCGAAGATCTTACAAGTCTCAAAATC
* ** * * *
7866554 TTTGAATGTTTTTTCTATATTAAAGGCATTGAAACTTTTGAAAATTTAAAATGTTTTGCTTGGAA
131 TTTGAATGTCTCCTCTACATTAAAGGCATTGAAACTTTTGAAAATTTAAAATGTTTTACATGGAA
** * * * *
7866619 GTCTTAAAGATTGTGCTTGAAAGTCTTAAGATTTCAAAATTTTTAAATGGTCCATATACATTAGA
196 GTCTTAAAGATTGTGCCCGAAAGTCTTAACATTTCAAAATCTTTAAATGCTCCATATACATTAAA
*
7866684 GGCGTTGAAACTTGGAAAATTTAAAATGTTTTGCCGGGAGGTCATAAGGATTGTGCTTAGAGGTC
261 GGCGTTGAAACTTGGAAAATTTAAAATGCTTTGCCGGGAGGTCATAAGGATTGTGCTTAGAGGTC
7866749 TTAGAGATTATACCC
326 TTAGAGATTATACCC
* * *
7866764 AAAGATCTTACAAATC-TCAAAATCTTTAAATGCTT-CTCATATATTAGAGGTGTTAAAACTTTT
1 AAAGATCTTACAAATCTTCAAAA-CTTTAAATG-TTCCTCATACATTAGAGGTATTAAAACTTTA
* *
7866827 GAAAATTTAAAATATTTTGCCTGGAAGTCTTAAAGATTATGCCC-AGAGATCTTA-AAGATTTCA
64 G-AAATTTAAAATATTTTGCCTGGAAGTCTTAAAGATTATACCCGA-AGATCTTACAAG-TCTCA
* *
7866890 AAATCTTTGAATG-CTCCTCATACATTAGAGGCATTGAAGC-TTTGAAAATTTAAAATGTTTTAC
126 AAATCTTTGAATGTCTCCTC-TACATTAAAGGCATTGAAACTTTTGAAAATTTAAAATGTTTTAC
* * * * *
7866953 ATGGAGGTTTTAAAGATTGTGCCCGAAGGTCTTAGACATTTCAAAATCTTTGAATGCTCCTTATA
190 ATGGAAGTCTTAAAGATTGTGCCCGAAAGTCTTA-ACATTTCAAAATCTTTAAATGCTCCATATA
*
7867018 CATTAAAGGCGTTGAAACTTTGAAAATTTAAAATGCTTTGCC
254 CATTAAAGGCGTTGAAACTTGGAAAATTTAAAATGCTTTGCC
7867060 ATGAGGTTTA
Statistics
Matches: 256, Mismatches: 33, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
339 5 0.02
340 107 0.42
341 144 0.56
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (340 bp):
AAAGATCTTACAAATCTTCAAAACTTTAAATGTTCCTCATACATTAGAGGTATTAAAACTTTAGA
AATTTAAAATATTTTGCCTGGAAGTCTTAAAGATTATACCCGAAGATCTTACAAGTCTCAAAATC
TTTGAATGTCTCCTCTACATTAAAGGCATTGAAACTTTTGAAAATTTAAAATGTTTTACATGGAA
GTCTTAAAGATTGTGCCCGAAAGTCTTAACATTTCAAAATCTTTAAATGCTCCATATACATTAAA
GGCGTTGAAACTTGGAAAATTTAAAATGCTTTGCCGGGAGGTCATAAGGATTGTGCTTAGAGGTC
TTAGAGATTATACCC
Found at i:7867391 original size:25 final size:25
Alignment explanation
Indices: 7867362--7867417 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
7867352 ATAGACTTCC
7867362 TTCTCTCTAATT-CCCCTTTTTTCTT
1 TTCTCTCT-ATTGCCCCTTTTTTCTT
* *
7867387 TTCTCT-TTTTGCCCTTTTTTTCTT
1 TTCTCTCTATTGCCCCTTTTTTCTT
7867411 TTC-CTCT
1 TTCTCTCT
7867418 TTTTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 17 0.63
25 6 0.22
ACGTcount: A:0.04, C:0.30, G:0.02, T:0.64
Consensus pattern (25 bp):
TTCTCTCTATTGCCCCTTTTTTCTT
Found at i:7867523 original size:18 final size:18
Alignment explanation
Indices: 7867479--7867549 Score: 61
Period size: 18 Copynumber: 3.8 Consensus size: 18
7867469 TCATCAAATG
7867479 ATGCGAATGCAAATGTCA
1 ATGCGAATGCAAATGTCA
* * *
7867497 ATGTGAATGCAAATTTCT
1 ATGCGAATGCAAATGTCA
* *
7867515 ATGCAAATGCAAGAATGTGA
1 ATGCGAATGC-A-AATGTCA
*
7867535 ATGCTTAATGCAAAT
1 ATGC-GAATGCAAAT
7867550 ACAAGTGACT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
18 23 0.56
19 4 0.10
20 9 0.22
21 5 0.12
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (18 bp):
ATGCGAATGCAAATGTCA
Found at i:7876579 original size:22 final size:23
Alignment explanation
Indices: 7876554--7876611 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
7876544 TTAGGATCTC
7876554 GTTTTAGGGTTTTAAA-ATTAAG
1 GTTTTAGGGTTTTAAAGATTAAG
* * *
7876576 GTTTT-GAGATTTTAAAGTTTTAG
1 GTTTTAG-GGTTTTAAAGATTAAG
*
7876599 ATTTTAGGGTTTT
1 GTTTTAGGGTTTT
7876612 GGTTTGAGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.04
22 13 0.46
23 13 0.46
24 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (23 bp):
GTTTTAGGGTTTTAAAGATTAAG
Found at i:7876602 original size:15 final size:16
Alignment explanation
Indices: 7876571--7876604 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7876561 GGTTTTAAAA
*
7876571 TTAAGGTTTTGAGATT
1 TTAAAGTTTTGAGATT
7876587 TTAAAGTTTT-AGATT
1 TTAAAGTTTTGAGATT
7876602 TTA
1 TTA
7876605 GGGTTTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (16 bp):
TTAAAGTTTTGAGATT
Found at i:7876610 original size:15 final size:15
Alignment explanation
Indices: 7876571--7876611 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7876561 GGTTTTAAAA
7876571 TTAAGGTTTTGAGATT
1 TTAAGGTTTT-AGATT
*
7876587 TTAAAGTTTTAGATT
1 TTAAGGTTTTAGATT
*
7876602 TTAGGGTTTT
1 TTAAGGTTTT
7876612 GGTTTGAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (15 bp):
TTAAGGTTTTAGATT
Found at i:7876632 original size:36 final size:38
Alignment explanation
Indices: 7876578--7876672 Score: 99
Period size: 36 Copynumber: 2.5 Consensus size: 38
7876568 AAATTAAGGT
*
7876578 TTTGAGATTTTAAAGTTTTAGA-TTT-TAGGGTTTTGG
1 TTTGAGATTTTAAAGTTTTAGAGTTTATAAGGTTTTGG
*
7876614 TTTGAG-TTTTAAGGGTTTTAGAGTTTATAAGGTTTTAGTG
1 TTTGAGATTTTAA-AGTTTTAGAGTTTATAAGGTTTT-G-G
* *
7876654 GTTG-GATTTTAAGGTTTTA
1 TTTGAGATTTTAAAGTTTTA
7876673 AGGATCTAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
35 6 0.12
36 14 0.28
37 3 0.06
38 8 0.16
39 9 0.18
40 10 0.20
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (38 bp):
TTTGAGATTTTAAAGTTTTAGAGTTTATAAGGTTTTGG
Found at i:7876639 original size:17 final size:17
Alignment explanation
Indices: 7876617--7876651 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7876607 GTTTTGGTTT
7876617 GAGTTT-TAAGGGTTTTA
1 GAGTTTATAA-GGTTTTA
7876634 GAGTTTATAAGGTTTTA
1 GAGTTTATAAGGTTTTA
7876651 G
1 G
7876652 TGGTTGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (17 bp):
GAGTTTATAAGGTTTTA
Found at i:7876986 original size:15 final size:15
Alignment explanation
Indices: 7876951--7876986 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 15
7876941 TTTTTTATAA
7876951 AAATTTATTATTAAT
1 AAATTTATTATTAAT
7876966 -AA--TATTATTAAT
1 AAATTTATTATTAAT
7876978 AAATTTATT
1 AAATTTATT
7876987 TTTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 6
0.75 0.00 0.25
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 2 0.11
15 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AAATTTATTATTAAT
Found at i:7877239 original size:6 final size:6
Alignment explanation
Indices: 7877228--7877267 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
7877218 TTTTTCATTC
*
7877228 TTGTTA TTGTTA TTATTA TTTAGTTA TTGTTA TTGTTA TT
1 TTGTTA TTGTTA TTGTTA -TT-GTTA TTGTTA TTGTTA TT
7877268 TATTATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 23 0.77
7 4 0.13
8 3 0.10
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (6 bp):
TTGTTA
Found at i:7877255 original size:20 final size:20
Alignment explanation
Indices: 7877230--7877273 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7877220 TTTCATTCTT
7877230 GTTATTGTTATTATTATTTA
1 GTTATTGTTATTATTATTTA
*
7877250 GTTATTGTTATTGTTATTTA
1 GTTATTGTTATTATTATTTA
7877270 -TTAT
1 GTTAT
7877274 ATATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (20 bp):
GTTATTGTTATTATTATTTA
Found at i:7877257 original size:26 final size:26
Alignment explanation
Indices: 7877232--7877281 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7877222 TCATTCTTGT
*
7877232 TATTGTTA-TTATTATTTAGTTATTGT
1 TATTGTTATTTATTATATA-TTATTGT
7877258 TATTGTTATTTATTATATATTATT
1 TATTGTTATTTATTATATATTATT
7877282 TAATAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (26 bp):
TATTGTTATTTATTATATATTATTGT
Found at i:7877280 original size:20 final size:20
Alignment explanation
Indices: 7877230--7877281 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
7877220 TTTCATTCTT
*
7877230 GTTATTGTTATTATTATTTA
1 GTTATTATTATTATTATTTA
* *
7877250 GTTATTGTTATTGTTATTTA
1 GTTATTATTATTATTATTTA
7877270 -TTATATATTATT
1 GTTAT-TATTATT
7877282 TAATAAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 4 0.14
20 25 0.86
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (20 bp):
GTTATTATTATTATTATTTA
Found at i:7882735 original size:107 final size:107
Alignment explanation
Indices: 7882549--7882776 Score: 438
Period size: 107 Copynumber: 2.1 Consensus size: 107
7882539 ACAACACATG
7882549 CATTGCATTTCATGTAGACATATCTAATTCACATGATAGGTTAGTACATTTCATAGAAGTATGTT
1 CATTGCATTTCATGTAGACATATCTAATTCACATGATAGGTTAGTACATTTCATAGAAGTATGTT
*
7882614 GCATTATTCATAGGTATATATCTCATCATTTATGTAGTATGC
66 GCATTAGTCATAGGTATATATCTCATCATTTATGTAGTATGC
7882656 CATTGCATTTCATGTAGACATATCTAATTCACATGATAGGTTAGTACATTTCATAGAAGTATGTT
1 CATTGCATTTCATGTAGACATATCTAATTCACATGATAGGTTAGTACATTTCATAGAAGTATGTT
*
7882721 GCATTAGTCATAGGTATATATCTCATCATTTATGTAGTATGT
66 GCATTAGTCATAGGTATATATCTCATCATTTATGTAGTATGC
7882763 CATTGCATTTCATG
1 CATTGCATTTCATG
7882777 CAAATGGATT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 119 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (107 bp):
CATTGCATTTCATGTAGACATATCTAATTCACATGATAGGTTAGTACATTTCATAGAAGTATGTT
GCATTAGTCATAGGTATATATCTCATCATTTATGTAGTATGC
Found at i:7887623 original size:20 final size:19
Alignment explanation
Indices: 7887598--7887646 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
7887588 TCAAATGTTT
*
7887598 AAAAAAATAAGAAAAAGCA
1 AAAAAAAAAAGAAAAAGCA
*
7887617 AAAAAAAAAGAGCAAAAGCA
1 AAAAAAAAA-AGAAAAAGCA
7887637 AAAAAAAAAA
1 AAAAAAAAAA
7887647 AGAGCAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.82, C:0.06, G:0.10, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAGCA
Found at i:7889047 original size:32 final size:31
Alignment explanation
Indices: 7888968--7889047 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 31
7888958 GCATCACTTG
* * * * *
7888968 CATTCGCACTTGCATGTACATTATGAGATAGA
1 CATTTGCA-TTGCATCTACATCATGAAAAAGA
7889000 CATTTGCATTCGCATCTACATCATGAAAAAGA
1 CATTTGCATT-GCATCTACATCATGAAAAAGA
*
7889032 CATTTGTAGTTGCATC
1 CATTTGCA-TTGCATC
7889048 ACTTGCGTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.05
32 36 0.90
33 2 0.05
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (31 bp):
CATTTGCATTGCATCTACATCATGAAAAAGA
Found at i:7890136 original size:16 final size:15
Alignment explanation
Indices: 7890079--7890130 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
7890069 AAAAACCAAG
7890079 AAAACAAACCAAAAA
1 AAAACAAACCAAAAA
7890094 ATCAGGAA-AAACCAAAAA
1 A--A--AACAAACCAAAAA
*
7890112 ATAACAAACCAAAAA
1 AAAACAAACCAAAAA
7890127 AAAA
1 AAAA
7890131 TGAAACACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 2 0.07
15 14 0.47
17 1 0.03
18 11 0.37
19 2 0.07
ACGTcount: A:0.75, C:0.17, G:0.04, T:0.04
Consensus pattern (15 bp):
AAAACAAACCAAAAA
Found at i:7892687 original size:372 final size:367
Alignment explanation
Indices: 7891920--7892841 Score: 1038
Period size: 372 Copynumber: 2.5 Consensus size: 367
7891910 ATCTCTGATC
* * *
7891920 AGCCT-ACCTACCATGGTTCACATCTTTGTGAGGTATTATCCGTTCTGGCCCTCCTGGCCTCACA
1 AGCCTAACC-ACCATGGTTCACACCCTTGTGAGGTATTATCCGCTCTGGCCC-CCTGGCCTCAC-
*
7891984 ATTTTATCTTACAAAAGGTGCCTCACAAGACAGAGATGGTGTGAACCCTTATATACCCCAGGGAC
63 ATTTTATCTTACAAAAGGTGCCTCACAAGACAGAGATGGTGTGAACCCTTATATACCCCAGAGAC
* **
7892049 CCTCCTATTATGTTCGATGTGGGATTCGGGA--CTCTTCTTTAGGTACGTAACATTCTTCTGCCT
128 CCTCCTATTATGTTCGATGTGGGATTCAGGACTCTCTTC-TTAGGTACGTAACATTCTTCCACCT
* *
7892112 ATCTCATGATGCCCTCATCACGACGGCTGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGACGTG
192 ATCTCATGACGCCCTCATCACGACGGCTGACCACCCTGCCTACCTCCCTCGAGGCGCTCGACGTG
* * **
7892177 GATCGAACGATTTATGGCTGGCATTGATACCACTTGTCACGGCTCAAAACTTAAGCTCTGAACTT
257 GATCGAACGATTTAAGGCTGGCATTGATACCACTTGTCACGGCTCAAAACTTAAGCTCTAAACCC
* *
7892242 GTGCGGCTTCAGGACCCAAGTATCCACTCATCCGATGTCCCAGATA
322 GTGCGGCTTCAAGACCCAAGCATCCACTCATCCGATGTCCCAGATA
* * * * * * * * * * *
7892288 AGCTTAACCATCACGGTTCATACCCTTGTGAGATATTGTTCGCTCTGGTCCCCTGACTTCACGGT
1 AGCCTAACCACCATGGTTCACACCCTTGTGAGGTATTATCCGCTCTGGCCCCCTGGCCTCAC-AT
* * * * * *
7892353 TTTATCTTACAAAAGGTGTCTCATAAGGCAGATG-TGGTGTGAACCCTTTTATACCCTAGTGACC
65 TTTATCTTACAAAAGGTGCCTCACAAGACAGA-GATGGTGTGAACCCTTATATACCCCAGAGACC
* * * * *
7892417 TTCTTATTATGTTCGATGTGGGATTCAGGACTCTCTTCATTAGGTTCGTGACATTTTTCCCCACC
129 CTCCTATTATGTTCGATGTGGGATTCAGGACTCTCTTC-TTAGGTACGTAACATTCTT--CCACC
* * * * * **
7892482 TAATCTCGTGACGCCCTCGTCACAGA-GGCTGACCACCTTGCCTACCTCCCTCGAGGTGCTTGGT
191 T-ATCTCATGACGCCCTCATCAC-GACGGCTGACCACCCTGCCTACCTCCCTCGAGGCGCTCGAC
* * * * *
7892546 GTGGATCGAACGATTTAAGGTTGGC-TCTGATACCACTTGTCATGGGTCGAGACTTAAGCT-TCA
254 GTGGATCGAACGATTTAAGGCTGGCAT-TGATACCACTTGTCACGGCTCAAAACTTAAGCTCT-A
* * * **
7892609 AACCCGTGTGGC-TCTAAGACCTCGA-CATCCACTCATCCGGTGTCTTAGATCA
317 AACCCGTGCGGCTTC-AAGACC-CAAGCATCCACTCATCCGATGTCCCAGAT-A
* *
7892661 A-CCTGACCGCCATGGTTCACACCCTTGTGAGGTATTATCCGCTCTGGCCCCCTCTGGCCTCATC
1 AGCCTAACCACCATGGTTCACACCCTTGTGAGGTATTATCCGCTCTGG-CCCC-CTGGCCTCA-C
* * *
7892725 ATTTTATCCTACAAAAGGTGCCTCACAAGACAGAGATGGTGTGAACTCTTATATACCCCAAAGAC
63 ATTTTATCTTACAAAAGGTGCCTCACAAGACAGAGATGGTGTGAACCCTTATATACCCCAGAGAC
* * *
7892790 CCTCCTATTATGTTCGATGTGAGATTTAGGACTCT-TTCTTAGGTCCGTAACA
128 CCTCCTATTATGTTCGATGTGGGATTCAGGACTCTCTTCTTAGGTACGTAACA
7892842 CAAGCACTAA
Statistics
Matches: 454, Mismatches: 83, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
367 93 0.20
368 37 0.08
369 25 0.06
371 8 0.02
372 186 0.41
373 13 0.03
374 91 0.20
375 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (367 bp):
AGCCTAACCACCATGGTTCACACCCTTGTGAGGTATTATCCGCTCTGGCCCCCTGGCCTCACATT
TTATCTTACAAAAGGTGCCTCACAAGACAGAGATGGTGTGAACCCTTATATACCCCAGAGACCCT
CCTATTATGTTCGATGTGGGATTCAGGACTCTCTTCTTAGGTACGTAACATTCTTCCACCTATCT
CATGACGCCCTCATCACGACGGCTGACCACCCTGCCTACCTCCCTCGAGGCGCTCGACGTGGATC
GAACGATTTAAGGCTGGCATTGATACCACTTGTCACGGCTCAAAACTTAAGCTCTAAACCCGTGC
GGCTTCAAGACCCAAGCATCCACTCATCCGATGTCCCAGATA
Found at i:7893259 original size:19 final size:17
Alignment explanation
Indices: 7893235--7893273 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7893225 CTTATCAAAA
7893235 GAAAAAAGAAAAGAGAAAG
1 GAAAAAA-AAAA-AGAAAG
*
7893254 GAAAAAAAGAAAGAAAG
1 GAAAAAAAAAAAGAAAG
7893271 GAA
1 GAA
7893274 TAAGGAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAAAAGAAAG
Found at i:7894353 original size:19 final size:19
Alignment explanation
Indices: 7894311--7894353 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7894301 TAATTTTGTA
7894311 TCTTTTTGTTTTTTATTTG
1 TCTTTTTGTTTTTTATTTG
* *
7894330 ACTTTTT-TTTTGTTATTTT
1 TCTTTTTGTTTT-TTATTTG
7894349 TCTTT
1 TCTTT
7894354 CTTAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (19 bp):
TCTTTTTGTTTTTTATTTG
Found at i:7895455 original size:21 final size:22
Alignment explanation
Indices: 7895408--7895458 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
7895398 TTTTGTTACA
*
7895408 TATTTTTATTATTTTTATGTCT
1 TATTTTTGTTATTTTTATGTCT
7895430 T-TTTTTGTTATTTTTTAT-T-T
1 TATTTTTGTTA-TTTTTATGTCT
7895450 TATTTTTGT
1 TATTTTTGT
7895459 GTGAACTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.08
21 16 0.62
22 8 0.31
ACGTcount: A:0.14, C:0.02, G:0.06, T:0.78
Consensus pattern (22 bp):
TATTTTTGTTATTTTTATGTCT
Found at i:7900108 original size:23 final size:23
Alignment explanation
Indices: 7900078--7900123 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7900068 CATACAGAGA
*
7900078 TAAAAAGATGTGGTCACCTAAAT
1 TAAAAAGATGTGGTCACCCAAAT
7900101 TAAAAAGATGTGGTCACCCAAAT
1 TAAAAAGATGTGGTCACCCAAAT
7900124 ATAGCTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.24
Consensus pattern (23 bp):
TAAAAAGATGTGGTCACCCAAAT
Found at i:7901484 original size:19 final size:18
Alignment explanation
Indices: 7901449--7901489 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7901439 AAAAATGCTA
**
7901449 AAAGAAAAAGCTAAAGTC
1 AAAGAAAAAGAAAAAGTC
7901467 AAAGAAAAAGAAAGAAGTC
1 AAAGAAAAAGAAA-AAGTC
7901486 AAAG
1 AAAG
7901490 TAACCTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.66, C:0.07, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGTC
Found at i:7903470 original size:82 final size:81
Alignment explanation
Indices: 7903348--7903502 Score: 267
Period size: 82 Copynumber: 1.9 Consensus size: 81
7903338 CAAAACTCAG
7903348 TATTAATATTGTATAACACAAGTTACCTTTGAAAAGCTAATGTAAGCTGATACAGTAAAAGTTAA
1 TATTAATATTGTATAACACAAGTTACCTTTGAAAAGCTAATGTAAGCTGATA-AGTAAAAGTTAA
*
7903413 GATGCATGAGGACTCGA
65 AATGCATGAGGACTCGA
*
7903430 TATTAATATTGTATAACATAAGTTACCTTTGAAATA-CTAATGTAAGCTGATAAGTAAAAGTTAA
1 TATTAATATTGTATAACACAAGTTACCTTTGAAA-AGCTAATGTAAGCTGATAAGTAAAAGTTAA
7903494 AATGCATGA
65 AATGCATGA
7903503 AACCAAAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
81 20 0.29
82 49 0.70
83 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (81 bp):
TATTAATATTGTATAACACAAGTTACCTTTGAAAAGCTAATGTAAGCTGATAAGTAAAAGTTAAA
ATGCATGAGGACTCGA
Found at i:7904602 original size:63 final size:63
Alignment explanation
Indices: 7904468--7904714 Score: 242
Period size: 63 Copynumber: 3.9 Consensus size: 63
7904458 GCGTTTTTTA
* * * * * * * * * * *
7904468 CCAAAAATGTCTTCAATAATTCATTCAAAAACTTTTGGAGAGTGATTATTAAATGTATTTTCGG
1 CCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGAAG-GGGATTATTAAAGGCATTTTTGT
*
7904532 CCAAAAACACCTTCAATAATCCATACAAAAAATTTTGAAGGGGATTATTAAAGGCATTTTTGT
1 CCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGAAGGGGATTATTAAAGGCATTTTTGT
* * ** * * * *
7904595 CCAAAAACGCCTTTAATAATTCATACAAAAAATTTTGAAATGGATTATTGACGACATTTTTAT
1 CCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGAAGGGGATTATTAAAGGCATTTTTGT
* * * * *
7904658 CCATAAACGCCTTCAATGATCTATACAAAAAATTTTGTTGAGGGAATTATTAAAGGC
1 CCAAAAACGCCTTCAATAATCCATACAAAAAATTTTG--AAGGGGATTATTAAAGGC
7904715 CTTGAATAAT
Statistics
Matches: 148, Mismatches: 33, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
63 104 0.70
64 33 0.22
65 11 0.07
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (63 bp):
CCAAAAACGCCTTCAATAATCCATACAAAAAATTTTGAAGGGGATTATTAAAGGCATTTTTGT
Found at i:7904781 original size:46 final size:46
Alignment explanation
Indices: 7904714--7904817 Score: 118
Period size: 46 Copynumber: 2.3 Consensus size: 46
7904704 TTATTAAAGG
* * * **
7904714 CCTTGAATAATTCGTGGATTATTCAAGACGTTTTTCTCCAAAAACA
1 CCTTGAATAATCCATGAATTATTCAAGACGTTTTTAGCCAAAAACA
* * * *
7904760 CCTTGAATAATCCATGAATTATTTAAGGCGTTTTTAGCTAAAAATA
1 CCTTGAATAATCCATGAATTATTCAAGACGTTTTTAGCCAAAAACA
*
7904806 CCTTCAATAATC
1 CCTTGAATAATC
7904818 ATATTCAGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.36
Consensus pattern (46 bp):
CCTTGAATAATCCATGAATTATTCAAGACGTTTTTAGCCAAAAACA
Found at i:7905072 original size:12 final size:12
Alignment explanation
Indices: 7905055--7905082 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7905045 TTTTTCTATG
7905055 TTCATATAAATA
1 TTCATATAAATA
7905067 TTCATATAAATA
1 TTCATATAAATA
7905079 TTCA
1 TTCA
7905083 ATTTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (12 bp):
TTCATATAAATA
Found at i:7905197 original size:21 final size:21
Alignment explanation
Indices: 7905171--7905219 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
7905161 TATTAAAGGC
7905171 GTTTATGGAAGTCAGTTATAG
1 GTTTATGGAAGTCAGTTATAG
7905192 GTTTATGGAAGTCAGTTATAG
1 GTTTATGGAAGTCAGTTATAG
7905213 GTTTATG
1 GTTTATG
7905220 CCCAGAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.04, G:0.29, T:0.41
Consensus pattern (21 bp):
GTTTATGGAAGTCAGTTATAG
Found at i:7910113 original size:38 final size:38
Alignment explanation
Indices: 7910057--7910129 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
7910047 GTGTTTTTGG
7910057 TCAAAAACACCTTCAATAA-TCTACTCATAAAAAATCTA
1 TCAAAAACACCTTCAATAATTC-ACTCATAAAAAATCTA
* * * *
7910095 TCAAAAATACTTTTAATAATTCATTCATAAAAAAT
1 TCAAAAACACCTTCAATAATTCACTCATAAAAAAT
7910130 ATAAGGGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 28 0.93
39 2 0.07
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.32
Consensus pattern (38 bp):
TCAAAAACACCTTCAATAATTCACTCATAAAAAATCTA
Found at i:7916288 original size:29 final size:29
Alignment explanation
Indices: 7916245--7916302 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
7916235 TTAAAGCCTA
* *
7916245 TTTTTTTTCCCTTGAGAAGGCTTTCTTAT
1 TTTTTTTTCCCTTGAAAAGGCTTCCTTAT
*
7916274 TTTTTTTTCCTTTGAAAAGGCTTCCTTAT
1 TTTTTTTTCCCTTGAAAAGGCTTCCTTAT
7916303 GATGTAAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.16, C:0.17, G:0.12, T:0.55
Consensus pattern (29 bp):
TTTTTTTTCCCTTGAAAAGGCTTCCTTAT
Found at i:7916635 original size:68 final size:68
Alignment explanation
Indices: 7916488--7916614 Score: 202
Period size: 68 Copynumber: 1.9 Consensus size: 68
7916478 GTATTACACT
* * *
7916488 AATGAATAGGATGTTTATAAAATTATTTTTACTGGTATATAAATGGATGATTACCTTTTGTATAT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTCTGTATAT
7916553 ATG
66 ATG
*
7916556 AATGAATAAGATGTTTATAAAATTATTTCTACCT-GTATATGAATGGATGATTACCTTCT
1 AATGAATAAGATGTTTATAAAATTATTTCTA-CTGGTATATAAATGGATGATTACCTTCT
7916615 TACCTTGTGT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 52 0.96
69 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (68 bp):
AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTACCTTCTGTATAT
ATG
Found at i:7916999 original size:23 final size:23
Alignment explanation
Indices: 7916972--7917021 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
7916962 ATAGGTGTAT
7916972 GTATGTTTTTTCTTGTTAAGGTG
1 GTATGTTTTTTCTTGTTAAGGTG
*
7916995 GTATGTTTTTTCTTGTTGAGGTG
1 GTATGTTTTTTCTTGTTAAGGTG
7917018 GTAT
1 GTAT
7917022 TGCAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.12, C:0.04, G:0.28, T:0.56
Consensus pattern (23 bp):
GTATGTTTTTTCTTGTTAAGGTG
Found at i:7917183 original size:15 final size:15
Alignment explanation
Indices: 7917163--7917197 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7917153 GGTATAACTC
*
7917163 TTTATCTATGTTTAT
1 TTTATCGATGTTTAT
*
7917178 TTTATCGATGTTTGT
1 TTTATCGATGTTTAT
7917193 TTTAT
1 TTTAT
7917198 TAGACTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.66
Consensus pattern (15 bp):
TTTATCGATGTTTAT
Found at i:7917539 original size:54 final size:54
Alignment explanation
Indices: 7917468--7917604 Score: 150
Period size: 54 Copynumber: 2.5 Consensus size: 54
7917458 CAAAATATAA
* *
7917468 TAAAAAAATTAAAACATATAAGTT-TATACTGACAATCTCTAACTATCAATAAAGG
1 TAAAAAAATT-AAACATACAA-TTATATACAGACAATCTCTAACTATCAATAAAGG
* * ** *
7917523 TAAAAAAATTAAACATACAATTATATACAGACAATTTCTAACTGTCGGTATAGG
1 TAAAAAAATTAAACATACAATTATATACAGACAATCTCTAACTATCAATAAAGG
* * *
7917577 TAAGAAAATTAAAAAATACAAATATATA
1 TAAAAAAATT-AAACATACAATTATATA
7917605 TTGATGGATA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.03
54 43 0.61
55 25 0.36
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.28
Consensus pattern (54 bp):
TAAAAAAATTAAACATACAATTATATACAGACAATCTCTAACTATCAATAAAGG
Found at i:7917710 original size:89 final size:89
Alignment explanation
Indices: 7917559--7917745 Score: 365
Period size: 89 Copynumber: 2.1 Consensus size: 89
7917549 ACAGACAATT
7917559 TCTAACTGTCGGTATAGGTAAGAAAATTAAAAAATACAAATATATATTGATGGATATTAAGCGTC
1 TCTAACTGTCGGTATAGGTAAGAAAATTAAAAAATACAAATATATATTGATGGATATTAAGCGTC
7917624 AGTATAGGTCAAAAAAATTACAAG
66 AGTATAGGTCAAAAAAATTACAAG
7917648 TCTAACTGTCGGTATAGGTAAGAAAATTAAAAAATACAAATATATATTGATGGATATTAAGCGTC
1 TCTAACTGTCGGTATAGGTAAGAAAATTAAAAAATACAAATATATATTGATGGATATTAAGCGTC
7917713 AGTATAGGTCAAAAAAATTACAAG
66 AGTATAGGTCAAAAAAATTACAAG
7917737 TCTATACTG
1 TCTA-ACTG
7917746 ACAAATGTTA
Statistics
Matches: 97, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 93 0.96
90 4 0.04
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (89 bp):
TCTAACTGTCGGTATAGGTAAGAAAATTAAAAAATACAAATATATATTGATGGATATTAAGCGTC
AGTATAGGTCAAAAAAATTACAAG
Found at i:7922150 original size:44 final size:43
Alignment explanation
Indices: 7922077--7922222 Score: 125
Period size: 44 Copynumber: 3.4 Consensus size: 43
7922067 GGGCAAAATA
* ** *
7922077 TTTTAAATTTTC-AAAGTTATTAAAACTCTATTTAGATAAGTC
1 TTTTAAATTTTCAAAAGTTATCAAGCCTCTATTTAGATAAGCC
* * *
7922119 TTTTAAATTTTCATAAAGTTATCGAGCCTCTATTCAGATGAGCC
1 TTTTAAATTTTCA-AAAGTTATCAAGCCTCTATTTAGATAAGCC
* * * * *
7922163 TTTCAAATTTTCAAAAAGTTGTCAAGCCTTTGTTTAGA-AGAACC
1 TTTTAAATTTTC-AAAAGTTATCAAGCCTCTATTTAGATA-AGCC
* *
7922207 TTTCAAATTTTTAAAA
1 TTTTAAATTTTCAAAA
7922223 AATTGTTGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
42 12 0.14
43 4 0.05
44 67 0.80
45 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (43 bp):
TTTTAAATTTTCAAAAGTTATCAAGCCTCTATTTAGATAAGCC
Found at i:7922591 original size:24 final size:24
Alignment explanation
Indices: 7922547--7922596 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
7922537 TTTAATCCAA
* * *
7922547 ATATGATTTTCTTTCTTTTTTTTT
1 ATATGACTTTATTTCTTTTTTATT
7922571 ATATGACTTTATTT-TTATTTTATT
1 ATATGACTTTATTTCTT-TTTTATT
7922595 AT
1 AT
7922597 TTGTTTCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (24 bp):
ATATGACTTTATTTCTTTTTTATT
Found at i:7925665 original size:108 final size:112
Alignment explanation
Indices: 7925442--7925674 Score: 273
Period size: 108 Copynumber: 2.1 Consensus size: 112
7925432 TAAAAAAATC
* * *
7925442 TTTATTAAATATTTTTAAGAAAGGAAAAAGTTAAAAAGGATAAAAAAAAGAAAAACAAAAAATTG
1 TTTA-TAAATTTTTTTAAGAAAAGAAAAAGTTAAAAAGGAT-AAAAAAAGAAAAACAAAAAATTA
* *
7925507 GATATAAGTGGATCCCACACAAAAAAATAAAATATTTAAAAATATTTTT
64 GATAAAAGTGGATCCCACACAAAAAAATAAAATATTTAAAAATATATTT
* **
7925556 TTTATAAATTTTTTTAAGAAAAGAAAAAGTTGATAAAGG-T-AAAAAAG-AAAA-AAAAGTTTAG
1 TTTATAAATTTTTTTAAGAAAAGAAAAAGTT-AAAAAGGATAAAAAAAGAAAAACAAAAAATTAG
* * * *
7925617 -TAAAAGTGG-TTCCACACATAAAAAGTAAAATCTTTAAGAATATATTT
65 ATAAAAGTGGATCCCACACA-AAAAAATAAAATATTTAAAAATATATTT
7925664 TTTAT-AATTTT
1 TTTATAAATTTT
7925675 AGAAAATATT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
107 14 0.13
108 37 0.35
109 7 0.07
110 4 0.04
111 7 0.07
113 26 0.25
114 10 0.10
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (112 bp):
TTTATAAATTTTTTTAAGAAAAGAAAAAGTTAAAAAGGATAAAAAAAGAAAAACAAAAAATTAGA
TAAAAGTGGATCCCACACAAAAAAATAAAATATTTAAAAATATATTT
Found at i:7925697 original size:22 final size:21
Alignment explanation
Indices: 7925644--7925702 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
7925634 ATAAAAAGTA
* *
7925644 AAATCTTTAAGAATATATTTTTT
1 AAAT-TTT-AGAAAATATTTATT
7925667 ATAATTTTAGAAAATATTTATT
1 A-AATTTTAGAAAATATTTATT
*
7925689 AAATATTTAAAAAA
1 AAAT-TTTAGAAAA
7925703 AGGAAAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 21 0.68
23 4 0.13
24 3 0.10
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (21 bp):
AAATTTTAGAAAATATTTATT
Found at i:7925791 original size:19 final size:17
Alignment explanation
Indices: 7925756--7925796 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
7925746 TTACACATGT
7925756 AAAAAATTAAATCTTTA
1 AAAAAATTAAATCTTTA
*
7925773 AAAAAATTTATAATTTTTA
1 AAAAAA-TTA-AATCTTTA
7925792 AAAAA
1 AAAAA
7925797 TCTAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 12 0.57
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAAATTAAATCTTTA
Found at i:7925794 original size:18 final size:18
Alignment explanation
Indices: 7925755--7925802 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7925745 GTTACACATG
7925755 TAAAAAA-TTAAATCTTT
1 TAAAAAATTTAAATCTTT
*
7925772 AAAAAAATTTATAAT-TTT
1 TAAAAAATTTA-AATCTTT
*
7925790 TAAAAAATCTAAA
1 TAAAAAATTTAAA
7925803 GAAAATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 8 0.31
18 15 0.58
19 3 0.12
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAAATTTAAATCTTT
Found at i:7926109 original size:22 final size:24
Alignment explanation
Indices: 7926057--7926117 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
7926047 TATAAAAAAA
*
7926057 TAAAATTTTTAAATATATATTATT
1 TAAAATTTTTAAAAATATATTATT
*
7926081 TATAATTTTTAAAAATAT-TTA-T
1 TAAAATTTTTAAAAATATATTATT
7926103 TAAAATTTTTAAAAA
1 TAAAATTTTTAAAAA
7926118 AGAAAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 15 0.44
23 3 0.09
24 16 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAAATTTTTAAAAATATATTATT
Found at i:7927181 original size:3 final size:3
Alignment explanation
Indices: 7927163--7927224 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
7927153 TTTCAACCAA
* * * *
7927163 ATT ATT A-T ATT A-T ATT ATT CTT ATT TTT ATT TTT A-T ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7927208 -TAT ATT ATT ATT ATT AT
1 AT-T ATT ATT ATT ATT AT
7927225 ATTTCTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
2 7 0.15
3 38 0.83
4 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7927224 original size:26 final size:25
Alignment explanation
Indices: 7927163--7927227 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 25
7927153 TTTCAACCAA
7927163 ATTATTA-TATTATATTATTCTTAT
1 ATTATTATTATTATATTATTCTTAT
*
7927187 -TT-TTATTTTTATATTA-TCATTTAT
1 ATTATTATTATTATATTATTC--TTAT
7927211 ATTATTATTATTATATT
1 ATTATTATTATTATATT
7927228 TCTTTTTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 5 0.15
23 11 0.32
24 4 0.12
25 2 0.06
26 12 0.35
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (25 bp):
ATTATTATTATTATATTATTCTTAT
Found at i:7935615 original size:22 final size:23
Alignment explanation
Indices: 7935581--7935629 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
7935571 ATAGGTGTAT
7935581 GTATGTTTTTTCTTGTTAAGGTG
1 GTATGTTTTTTCTTGTTAAGGTG
*
7935604 GTATG-TTTTTCTTGTTGAGGTG
1 GTATGTTTTTTCTTGTTAAGGTG
7935626 GTAT
1 GTAT
7935630 TGCAATTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.12, C:0.04, G:0.29, T:0.55
Consensus pattern (23 bp):
GTATGTTTTTTCTTGTTAAGGTG
Found at i:7935790 original size:15 final size:15
Alignment explanation
Indices: 7935770--7935804 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7935760 GGTATAACTC
*
7935770 TTTATCTATGTTTAT
1 TTTATCGATGTTTAT
*
7935785 TTTATCGATGTTTGT
1 TTTATCGATGTTTAT
7935800 TTTAT
1 TTTAT
7935805 TAGACTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.66
Consensus pattern (15 bp):
TTTATCGATGTTTAT
Found at i:7939484 original size:11 final size:11
Alignment explanation
Indices: 7939468--7939492 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7939458 TACTTTGCTT
7939468 AAAAAAAAGAA
1 AAAAAAAAGAA
7939479 AAAAAAAAGAA
1 AAAAAAAAGAA
7939490 AAA
1 AAA
7939493 GAAGGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:7940672 original size:44 final size:43
Alignment explanation
Indices: 7940599--7940744 Score: 145
Period size: 44 Copynumber: 3.4 Consensus size: 43
7940589 GGGCAGAATA
* * *
7940599 TTTTAAATTTTC-AAAGTTATTAAGACTCTATTTAGAGAAGTC
1 TTTTAAATTTTCAAAAGTTATCAAGCCTCTATTTAGAGAAGCC
* *
7940641 TTTTAAATTTTCATAAAGTTATCGAGCCTCTATTCAGATG-AGCC
1 TTTTAAATTTTCA-AAAGTTATCAAGCCTCTATTTAGA-GAAGCC
* * *
7940685 TTTTAAATTTTCAAAAAGTTGTCAAGCCTTTGTTTAGAAGAA-CC
1 TTTTAAATTTTC-AAAAGTTATCAAGCCTCTATTTAG-AGAAGCC
* *
7940729 TTTCAAATTTTTAAAA
1 TTTTAAATTTTCAAAA
7940745 AATTGTTGAG
Statistics
Matches: 86, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
42 12 0.14
43 4 0.05
44 66 0.77
45 4 0.05
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (43 bp):
TTTTAAATTTTCAAAAGTTATCAAGCCTCTATTTAGAGAAGCC
Found at i:7940765 original size:44 final size:44
Alignment explanation
Indices: 7940627--7940789 Score: 114
Period size: 44 Copynumber: 3.7 Consensus size: 44
7940617 ATTAAGACTC
* * * * * * *
7940627 TATTTAG-AGAAGTCTTTTAAATTTTCATAAAGTTATCGAGCCTC
1 TATTTAGAAGAA-CCTTTCAAATTTTCAAAAAATTGTCAAGCCTT
* * * * *
7940671 TATTCAGATGAGCCTTTTAAATTTTCAAAAAGTTGTCAAGCCTT
1 TATTTAGAAGAACCTTTCAAATTTTCAAAAAATTGTCAAGCCTT
* * ** *
7940715 TGTTTAGAAGAACCTTTCAAATTTTTAAAAAATTGTTGAGCTTT
1 TATTTAGAAGAACCTTTCAAATTTTCAAAAAATTGTCAAGCCTT
* * *
7940759 TATTTAGAGGAGCCCTTT-GAATTTTCAAAAA
1 TATTTAGAAGA-ACCTTTCAAATTTTCAAAAA
7940790 GTTGCTAAGC
Statistics
Matches: 94, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
44 87 0.93
45 7 0.07
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (44 bp):
TATTTAGAAGAACCTTTCAAATTTTCAAAAAATTGTCAAGCCTT
Found at i:7944089 original size:113 final size:110
Alignment explanation
Indices: 7943959--7944193 Score: 278
Period size: 113 Copynumber: 2.1 Consensus size: 110
7943949 TAAAAAAATC
* * *
7943959 TTTATTAAATATTTTTAAGAAAGGAAAAAGTT-AAAAAGAATAAAAAAAGAAAAACAAAAAATTG
1 TTTA-TAAATTTTTTTAAGAAAAGAAAAAGTTGAAAAAG-ATAAAAAAA-AAAAA-AAAAAATTA
* *
7944023 GATATAAGTGGATCCCACACA-AAAAAATAAAATATTTAAAAATATTTTTT
62 G-TAAAAGTGGATCCCACACATAAAAAATAAAATATTTAAAAATA-TATTT
* * **
7944073 TTTATAAATTTTTTTAAGAAAAGAAAAAGTTGATAAAGGTAAAAAAAAAAAAAAAAGTTTAGTAA
1 TTTATAAATTTTTTTAAGAAAAGAAAAAGTTGAAAAAGATAAAAAAAAAAAAAAAAAATTAGTAA
* * * *
7944138 AAGTGGTTCCCACACATAAAAAGTAAAATCTTTAAGAATATATTT
66 AAGTGGATCCCACACATAAAAAATAAAATATTTAAAAATATATTT
7944183 TTTAT-AATTTT
1 TTTATAAATTTT
7944194 AGAAAATATT
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
109 6 0.06
110 26 0.25
111 27 0.25
112 5 0.05
113 33 0.31
114 9 0.08
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (110 bp):
TTTATAAATTTTTTTAAGAAAAGAAAAAGTTGAAAAAGATAAAAAAAAAAAAAAAAAATTAGTAA
AAGTGGATCCCACACATAAAAAATAAAATATTTAAAAATATATTT
Found at i:7944216 original size:22 final size:21
Alignment explanation
Indices: 7944163--7944221 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
7944153 ATAAAAAGTA
* *
7944163 AAATCTTTAAGAATATATTTTTT
1 AAAT-TTT-AGAAAATATTTATT
7944186 ATAATTTTAGAAAATATTTATT
1 A-AATTTTAGAAAATATTTATT
*
7944208 AAATATTTAAAAAA
1 AAAT-TTTAGAAAA
7944222 AGGAAAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 21 0.68
23 4 0.13
24 3 0.10
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (21 bp):
AAATTTTAGAAAATATTTATT
Found at i:7944311 original size:19 final size:17
Alignment explanation
Indices: 7944276--7944316 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
7944266 TTACACATGT
7944276 AAAAAATTAAATCTTTA
1 AAAAAATTAAATCTTTA
*
7944293 AAAAAATTTATAATTTTTA
1 AAAAAA-TTA-AATCTTTA
7944312 AAAAA
1 AAAAA
7944317 TCTAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 12 0.57
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAAATTAAATCTTTA
Found at i:7944314 original size:18 final size:18
Alignment explanation
Indices: 7944275--7944322 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7944265 GTTACACATG
7944275 TAAAAAA-TTAAATCTTT
1 TAAAAAATTTAAATCTTT
*
7944292 AAAAAAATTTATAAT-TTT
1 TAAAAAATTTA-AATCTTT
*
7944310 TAAAAAATCTAAA
1 TAAAAAATTTAAA
7944323 GAAAATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 8 0.31
18 15 0.58
19 3 0.12
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAAATTTAAATCTTT
Found at i:7944381 original size:7 final size:7
Alignment explanation
Indices: 7944343--7944406 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
7944333 ATTAAATCTT
7944343 ATAAAAA
1 ATAAAAA
7944350 ATAACAATA
1 ATAA-AA-A
*
7944359 TTAAAAA
1 ATAAAAA
7944366 TATTAAAAA
1 -A-TAAAAA
7944375 ATAAAAA
1 ATAAAAA
*
7944382 GTAAAAA
1 ATAAAAA
*
7944389 GTAAAAA
1 ATAAAAA
7944396 A-AAAAA
1 ATAAAAA
7944402 A-AAAA
1 ATAAAA
7944407 TTTTAATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
6 10 0.20
7 24 0.49
8 5 0.10
9 10 0.20
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:7944634 original size:22 final size:24
Alignment explanation
Indices: 7944582--7944642 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
7944572 TATAAAAAAA
*
7944582 TAAAATTTTTAAATATATATTATT
1 TAAAATTTTTAAAAATATATTATT
*
7944606 TATAATTTTTAAAAATAT-TTA-T
1 TAAAATTTTTAAAAATATATTATT
7944628 TAAAATTTTTAAAAA
1 TAAAATTTTTAAAAA
7944643 AGAAAAAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 15 0.44
23 3 0.09
24 16 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAAATTTTTAAAAATATATTATT
Found at i:7945449 original size:3 final size:3
Alignment explanation
Indices: 7945441--7945466 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7945431 AAGAGAAATT
7945441 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7945467 GAAGCATTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7945690 original size:5 final size:5
Alignment explanation
Indices: 7945680--7945752 Score: 57
Period size: 5 Copynumber: 14.8 Consensus size: 5
7945670 TCAACCAAAT
* *
7945680 TATTA TATTA TATTA TATTA TATTA TTCTTA T-TTT TATT- T-TTA TATTA
1 TATTA TATTA TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TATTA
7945728 TCATT- TA-TA TTATTA CTATTA TATT
1 T-ATTA TATTA -TATTA -TATTA TATT
7945753 TCTTTTTTCC
Statistics
Matches: 57, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 34 0.60
6 14 0.25
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:7945759 original size:38 final size:33
Alignment explanation
Indices: 7945687--7945759 Score: 83
Period size: 38 Copynumber: 2.1 Consensus size: 33
7945677 AATTATTATA
*
7945687 TTATATTATATTATATTATTCTTATTTTTATTT
1 TTATATTATATTATATTATTCTTATATTTATTT
*
7945720 TTATATTATCATTTATATTATTACTATTATATTTCTTT
1 TTATATTAT-A-TTATATTATT-C--TTATATTTATTT
7945758 TT
1 TT
7945760 TCCTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
33 9 0.27
34 1 0.03
35 10 0.30
36 1 0.03
38 12 0.36
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.67
Consensus pattern (33 bp):
TTATATTATATTATATTATTCTTATATTTATTT
Found at i:7945783 original size:11 final size:10
Alignment explanation
Indices: 7945755--7945815 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
7945745 ATTATATTTC
*
7945755 TTTTTTCCTT
1 TTTTTTCTTT
*
7945765 TTTATTCTTT
1 TTTTTTCTTT
7945775 TTTCTTTCTTT
1 TTT-TTTCTTT
*
7945786 TTTTCTACATCTT
1 TTTT-TTC-T-TT
*
7945799 TTCTTTCTTT
1 TTTTTTCTTT
7945809 TTTTTTC
1 TTTTTTC
7945816 GAAAGCTCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
10 20 0.50
11 12 0.30
12 3 0.08
13 5 0.12
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:7946815 original size:19 final size:22
Alignment explanation
Indices: 7946787--7946834 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
7946777 AGCATCATCG
7946787 AAAAAGAAAAA-A-ACAAACAC
1 AAAAAGAAAAATACACAAACAC
7946807 AAAAA-AAAAATACACAAACAC
1 AAAAAGAAAAATACACAAACAC
7946828 ATAAAAG
1 A-AAAAG
7946835 GGAGAAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
20 6 0.25
21 9 0.38
22 4 0.17
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (22 bp):
AAAAAGAAAAATACACAAACAC
Found at i:7947700 original size:19 final size:19
Alignment explanation
Indices: 7947676--7947713 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7947666 GTTCATTTAG
7947676 TATAAATTGATCTTTCTGC
1 TATAAATTGATCTTTCTGC
7947695 TATAAATTGATCTTTCTGC
1 TATAAATTGATCTTTCTGC
7947714 CTGATCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (19 bp):
TATAAATTGATCTTTCTGC
Found at i:7953347 original size:25 final size:25
Alignment explanation
Indices: 7953317--7953371 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
7953307 AAAAAGAGGC
7953317 AAAAATAATAA-AAT-AATGAAATAAT
1 AAAAATAA-AAGAATGAATG-AATAAT
*
7953342 AAAAATAAAAGAATGAATGCATAAT
1 AAAAATAAAAGAATGAATGAATAAT
7953367 AAAAA
1 AAAAA
7953372 CATTCAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 2 0.07
25 21 0.78
26 4 0.15
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (25 bp):
AAAAATAAAAGAATGAATGAATAAT
Found at i:7953500 original size:62 final size:63
Alignment explanation
Indices: 7953421--7953586 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 63
7953411 ACTCATGAAC
*
7953421 AAAAATCTTT-TAAATTTTATTAGAATGATGGTAAATTTAAAAGAAAA-TAAAACAAAATAAT
1 AAAAATCTTTCTAAATTTTACTAGAATGATGGTAAATTTAAAAGAAAATTAAAACAAAATAAT
* *
7953482 AAAAATTCTTTCT-AATTTTACTAGAATGATGGTAAATTTAAAAGAAAATTCAAATAAAATAAT
1 AAAAA-TCTTTCTAAATTTTACTAGAATGATGGTAAATTTAAAAGAAAATTAAAACAAAATAAT
* * *
7953545 AAAAAAACTTTTCTAAATTTTACTAGAAAGATGATAAATTTA
1 -AAAAATC-TTTCTAAATTTTACTAGAATGATGGTAAATTTA
7953587 GGGAAAAATT
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
61 5 0.05
62 39 0.42
63 14 0.15
64 10 0.11
65 25 0.27
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.34
Consensus pattern (63 bp):
AAAAATCTTTCTAAATTTTACTAGAATGATGGTAAATTTAAAAGAAAATTAAAACAAAATAAT
Found at i:7954343 original size:7 final size:7
Alignment explanation
Indices: 7954333--7954372 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
7954323 GGATAATTAA
7954333 TAAAAGT
1 TAAAAGT
*
7954340 TAAAATT
1 TAAAAGT
7954347 TAAAAGT
1 TAAAAGT
7954354 TAAAAGT
1 TAAAAGT
*
7954361 TAAAATT
1 TAAAAGT
7954368 TAAAA
1 TAAAA
7954373 CCAATTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (7 bp):
TAAAAGT
Found at i:7954358 original size:21 final size:21
Alignment explanation
Indices: 7954333--7954372 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7954323 GGATAATTAA
7954333 TAAAAGTTAAAATTTAAAAGT
1 TAAAAGTTAAAATTTAAAAGT
7954354 TAAAAGTTAAAATTTAAAA
1 TAAAAGTTAAAATTTAAAA
7954373 CCAATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
TAAAAGTTAAAATTTAAAAGT
Found at i:7963071 original size:16 final size:16
Alignment explanation
Indices: 7963052--7963086 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7963042 TATGTTTTTC
* *
7963052 TTATTTTTTATTTTAT
1 TTATTTATTATTCTAT
7963068 TTATTTATTATTCTAT
1 TTATTTATTATTCTAT
7963084 TTA
1 TTA
7963087 ATTAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTATTCTAT
Found at i:7966865 original size:147 final size:147
Alignment explanation
Indices: 7966598--7966891 Score: 561
Period size: 147 Copynumber: 2.0 Consensus size: 147
7966588 GTTGTGTTTG
7966598 GTTGACCTATATCCTTTTAGACCCATTGTTGACAAGACCCACCAACACAAATTGCCACCACTAAA
1 GTTGACCTATATCCTTTTAGACCCATTGTTGACAAGACCCACCAACACAAATTGCCACCACTAAA
7966663 TTGATATTGTATCTTTTCCAAACTAGTAAGAAAACCAAGTCAGACAAATGGCTCAAAGAGTTCAT
66 TTGATATTGTATCTTTTCCAAACTAGTAAGAAAACCAAGTCAGACAAATGGCTCAAAGAGTTCAT
7966728 AAAACAGTTTATTAATT
131 AAAACAGTTTATTAATT
*
7966745 GTTGACCTATATCCTTTTATACCCATTGTTGACAAGACCCACCAACACAAATTGCCACCACTAAA
1 GTTGACCTATATCCTTTTAGACCCATTGTTGACAAGACCCACCAACACAAATTGCCACCACTAAA
* *
7966810 TTGATATTGTATCTTTTCCTAACTAGTAAGAAAACCAAGTCAGACAAATGGCTCAAGGAGTTCAT
66 TTGATATTGTATCTTTTCCAAACTAGTAAGAAAACCAAGTCAGACAAATGGCTCAAAGAGTTCAT
7966875 AAAACAGTTTATTAATT
131 AAAACAGTTTATTAATT
7966892 TACAAAAAGC
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
147 144 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (147 bp):
GTTGACCTATATCCTTTTAGACCCATTGTTGACAAGACCCACCAACACAAATTGCCACCACTAAA
TTGATATTGTATCTTTTCCAAACTAGTAAGAAAACCAAGTCAGACAAATGGCTCAAAGAGTTCAT
AAAACAGTTTATTAATT
Found at i:7979576 original size:20 final size:19
Alignment explanation
Indices: 7979529--7979576 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7979519 ATGATACATA
7979529 ATTTTATATAAAATATAAT
1 ATTTTATATAAAATATAAT
** *
7979548 ATAAATATATAAATTATTAAT
1 AT-TTTATATAAAATA-TAAT
7979569 ATTTTATA
1 ATTTTATA
7979577 CGACATAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
19 2 0.09
20 14 0.64
21 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTTATATAAAATATAAT
Found at i:7983043 original size:22 final size:21
Alignment explanation
Indices: 7983014--7983053 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7983004 GATTAATCCT
*
7983014 TTTTAAAAATGGATCGATCAG
1 TTTTCAAAATGGATCGATCAG
*
7983035 TTTTCAAAATGGATTGATC
1 TTTTCAAAATGGATCGATC
7983054 CCGTAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (21 bp):
TTTTCAAAATGGATCGATCAG
Found at i:7984443 original size:22 final size:24
Alignment explanation
Indices: 7984400--7984444 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7984390 AACATTAATT
7984400 TAATAAAAATACTATATTTATATA
1 TAATAAAAATACTATATTTATATA
*
7984424 TAATAAAGATA-TA-ATTTATAT
1 TAATAAAAATACTATATTTATAT
7984445 TGAAAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 2 0.10
24 10 0.50
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
TAATAAAAATACTATATTTATATA
Found at i:7988738 original size:26 final size:27
Alignment explanation
Indices: 7988690--7988741 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
7988680 AATAGTTTAA
7988690 AAGATAAAAATTATTTTTGTTTATTTG
1 AAGATAAAAATTATTTTTGTTTATTTG
*
7988717 AAGA-AAAAATT-TTTATTTTTTATTT
1 AAGATAAAAATTATTT-TTGTTTATTT
7988742 TTTAAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 3 0.13
26 16 0.70
27 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (27 bp):
AAGATAAAAATTATTTTTGTTTATTTG
Found at i:7989002 original size:26 final size:24
Alignment explanation
Indices: 7988940--7989014 Score: 89
Period size: 24 Copynumber: 3.0 Consensus size: 24
7988930 CAGGAAAAGT
* *
7988940 AAATAAATAGTAAAATACATGAAAA
1 AAATAAA-AATAAAATAAATGAAAA
7988965 AAATAAAAATAAAATAAATGAAAA
1 AAATAAAAATAAAATAAATGAAAA
*
7988989 AACTCAAAACATAAAATAAAT-AAAA
1 AAAT-AAAA-ATAAAATAAATGAAAA
7989014 A
1 A
7989015 TAAAAAGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
24 18 0.40
25 16 0.36
26 11 0.24
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.17
Consensus pattern (24 bp):
AAATAAAAATAAAATAAATGAAAA
Found at i:7990078 original size:46 final size:46
Alignment explanation
Indices: 7989995--7990084 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
7989985 ACATGTGAAT
** * *
7989995 TAATTGCATAAATCAAGCACTGAATTTTCCTACAAAATCTTTAACG
1 TAATTGCATAAATCAAGCACCAAAATTTACTACAAAATCTTTAACG
* *
7990041 TAATTGCATGAATCAAGCACCAAAATTTACTAGAAAATCTTTAA
1 TAATTGCATAAATCAAGCACCAAAATTTACTACAAAATCTTTAA
7990085 TTTTTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (46 bp):
TAATTGCATAAATCAAGCACCAAAATTTACTACAAAATCTTTAACG
Found at i:7990972 original size:86 final size:86
Alignment explanation
Indices: 7990759--7991226 Score: 482
Period size: 86 Copynumber: 5.5 Consensus size: 86
7990749 TTTAGATTCA
* *** * * *
7990759 CAAGAATGAAAGATTTGTAAGATTTCAAGTTTCGTAAAGGTTCTAAATTTACAAAGATGTAAGAT
1 CAAGAAAGAAAGATTCACAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
* *
7990824 TC--ACAAGA-TTTCAGGTTTG
66 TCGTA-AAGATTTTCAAGTTCG
* * * * **
7990843 CAAGAAAGAAGGATTCACTAGACTTCAAGCTTTAC--CAAGGTTCTAGATTCGCAAAGATAAAAG
1 CAAGAAAGAAAGATTCACAAGACTTCAAG-TTT-CGTAAAGGTTCTAGATTCACAAAGATGTAAG
*
7990906 ATTCGTAAAGA-TTTCTAGATTCG
64 ATTCGTAAAGATTTTCAAG-TTCG
* * * * * *
7990929 TAAAAAAGAAAAATTTACAAGATTTAAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
1 CAAGAAAGAAAGATTCACAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
7990994 TCGTAAAGATTTTCAAGTTCG
66 TCGTAAAGATTTTCAAGTTCG
* * * *
7991015 TAAGAAAGAAAGATTCATAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGACGCAAGAT
1 CAAGAAAGAAAGATTCACAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
* * *
7991080 TTGTAAGGATTTTCAAGTTCA
66 TCGTAAAGATTTTCAAGTTCG
* * ** *
7991101 CAAGAAAGAAAGATTCAAAAAACTTCAAGTTTCGTAAAGGTTCTAGATTTGCAAAGATGTAATAT
1 CAAGAAAGAAAGATTCACAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
* * * *
7991166 TCGCAAGGATTTTCAGGTTTG
66 TCGTAAAGATTTTCAAGTTCG
* *
7991187 CAAGAAAGAAAGATTTACAAGA-TCTCAAGTTTCGCAAAGG
1 CAAGAAAGAAAGATTCACAAGACT-TCAAGTTTCGTAAAGG
7991227 CTAGAAAAAT
Statistics
Matches: 318, Mismatches: 57, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
84 49 0.15
85 16 0.05
86 247 0.78
87 6 0.02
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (86 bp):
CAAGAAAGAAAGATTCACAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGATGTAAGAT
TCGTAAAGATTTTCAAGTTCG
Found at i:7991133 original size:172 final size:170
Alignment explanation
Indices: 7990732--7991226 Score: 547
Period size: 172 Copynumber: 2.9 Consensus size: 170
7990722 CGCAAGGATT
* * **
7990732 CAAGATTTGCAAAGGATTTT-AGATTCACAAGAATGAAAGATTTGTAAGATTTCAAGTTTCGTAA
1 CAAGATTTG-TAAGGATTTTCAGATTCACAAGAAAGAAAGATTTAAAAGATTTCAAGTTTCGTAA
* *
7990796 AGGTTCTAAATTTACAAAGATGTAAGATTC-ACAAGA-TTTCAGGTTTGCAAGAAAGAAGGATTC
65 AGGTTCTAGATTTACAAAGATGTAAGATTCGA-AAGATTTTCAGGTTTGCAAGAAAGAAAGATTC
* * *
7990859 ACT-AGACTTCAAGCTTTAC-CAAGGTTCTAGATTCGCAAAGATA
129 A-TAAGACTTCAAG-TTT-CGAAAGGTTCTAGATTCACAAAGACA
* * * ** * * * *
7990902 AAAGATTCGTAAAGA-TTTCTAGATTCGTAAAAAAGAAAAATTTACAAGATTTAAAGTTTCGTAA
1 CAAGATTTGTAAGGATTTTC-AGATTCACAAGAAAGAAAGATTTAAAAGATTTCAAGTTTCGTAA
* * * *
7990966 AGGTTCTAGATTCACAAAGATGTAAGATTCGTAAAGATTTTCAAGTTCGTAAGAAAGAAAGATTC
65 AGGTTCTAGATTTACAAAGATGTAAGATTCG-AAAGATTTTCAGGTTTGCAAGAAAGAAAGATTC
*
7991031 ATAAGACTTCAAGTTTCGTAAAGGTTCTAGATTCACAAAGACG
129 ATAAGACTTCAAGTTTCG-AAAGGTTCTAGATTCACAAAGACA
* * *
7991074 CAAGATTTGTAAGGATTTTCA-AGTTCACAAGAAAGAAAGATTCAAAAAACTTCAAGTTTCGTAA
1 CAAGATTTGTAAGGATTTTCAGA-TTCACAAGAAAGAAAGATTTAAAAGATTTCAAGTTTCGTAA
* * * *
7991138 AGGTTCTAGATTTGCAAAGATGTAATATTCGCAAGGATTTTCAGGTTTGCAAGAAAGAAAGATTT
65 AGGTTCTAGATTTACAAAGATGTAAGATTCG-AAAGATTTTCAGGTTTGCAAGAAAGAAAGATTC
*
7991203 ACAAGA-TCTCAAGTTTCGCAAAGG
129 ATAAGACT-TCAAGTTTCG-AAAGG
7991227 CTAGAAAAAT
Statistics
Matches: 269, Mismatches: 45, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
168 3 0.01
169 4 0.01
170 72 0.27
171 10 0.04
172 176 0.65
173 4 0.01
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (170 bp):
CAAGATTTGTAAGGATTTTCAGATTCACAAGAAAGAAAGATTTAAAAGATTTCAAGTTTCGTAAA
GGTTCTAGATTTACAAAGATGTAAGATTCGAAAGATTTTCAGGTTTGCAAGAAAGAAAGATTCAT
AAGACTTCAAGTTTCGAAAGGTTCTAGATTCACAAAGACA
Found at i:7991746 original size:120 final size:120
Alignment explanation
Indices: 7991455--7992083 Score: 457
Period size: 120 Copynumber: 5.2 Consensus size: 120
7991445 AAATAACTGG
* * * * * * *** *
7991455 GATAAAACCTCGAGTCATAAGAAATGATTTAGACTGAGCCAAGATTAGGTGATTGGGATAAAACC
1 GATAAAACCACAAGTCATAAGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAGGATAAAATC
* * ** * * ** * ** **
7991520 ACGAGT-CAAAATGAAACGACCACGACCAAGTCGAGGTTTAAAATAAATGATCGG
66 ATGAGTAAAAAATGAAGTGACTAAGACTGAGTCAAGGTCAAAAATAAATGATCAA
* * * * * * * * * * * *
7991574 GATGAAACCATAAGTCATATGAAATGATTTGGATTAAGTCAATAATAGGTGACTAGGATAAAATC
1 GATAAAACCACAAGTCATAAGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAGGATAAAATC
* * * * * *
7991639 ATAAGTAAAAAATGAGGTGA-TCAAGATTAAGTCAAGGTCGAAAATAAATGATCGA
66 ATGAGTAAAAAATGAAGTGACT-AAGACTGAGTCAAGGTCAAAAATAAATGATCAA
* * * * * * * *
7991694 CATAAAATCATAAGTCATAAGAAATTATATAGACTGAGCTAAGATCAAGTGACC-GAGATAAAAT
1 GATAAAACCACAAGTCATAAGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAG-GATAAAAT
* * * * * *
7991758 CATGAGT-CAAAATAAAGTGACTTAGACTGGGTCGAGGTCGAAAATAAATGA-CAAA
65 CATGAGTAAAAAATGAAGTGACTAAGACTGAGTCAAGGTCAAAAATAAATGATC-AA
* * *
7991813 GATAAAACCACAAGTCATATA-AAATGATCTAGATTGAGCCAAGATTAAGTGACCAAGACAAAAT
1 GATAAAACCACAAGTCATA-AGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAGGATAAAAT
* * * * *
7991877 CACGAGTAAAAAATGAAGTGACTAAGACTGAGTCATGGTTAAAAATAAATGACCGA
65 CATGAGTAAAAAATGAAGTGACTAAGACTGAGTCAAGGTCAAAAATAAATGATCAA
* * * * *
7991933 GATGAAACCACGAA-TCATAAGAAATAATCTGGATTGAGCCCAGATTAGGTGACCGGGATAAAAT
1 GATAAAACCAC-AAGTCATAAGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAGGATAAAAT
* * *
7991997 CATGAGTCAAAAAATG-AGATGACTAGGA-TCGAGTCGAGGTTAAAAATAAATGATCAA
65 CATGAGT-AAAAAATGAAG-TGACTAAGACT-GAGTCAAGGTCAAAAATAAATGATCAA
* * *
7992054 GATAAAATCACGAGTCATAAGAAATGATCT
1 GATAAAACCACAAGTCATAAGAAATAATCT
7992084 TAACTGAGTC
Statistics
Matches: 403, Mismatches: 92, Indels: 28
0.77 0.18 0.05
Matches are distributed among these distances:
118 1 0.00
119 149 0.37
120 187 0.46
121 66 0.16
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.22
Consensus pattern (120 bp):
GATAAAACCACAAGTCATAAGAAATAATCTAGATTGAGCCAAGATTAAGTGACCAGGATAAAATC
ATGAGTAAAAAATGAAGTGACTAAGACTGAGTCAAGGTCAAAAATAAATGATCAA
Found at i:7991830 original size:239 final size:240
Alignment explanation
Indices: 7991456--7992083 Score: 570
Period size: 239 Copynumber: 2.6 Consensus size: 240
7991446 AATAACTGGG
* * * * * * ** * *
7991456 ATAAAACCTCGAGTCATAAGAAATGATTTAGACTGAGCCAAGATTAGGTGATTGGGATAAAACCA
1 ATAAAACCACGAATCATAAGAAATAATATAGACTGAGCCAAGATCAAGTGACCGAGATAAAATCA
* * * * * * * * ** ** * *
7991521 CGAGTC-AAAATGAAACGACCACGACCAAGTCGAGGTTTAAAATAAATGATCGGGATGAAACCAT
66 TGAGTCAAAAAAGAGATGACTAGGATCGAGTCGAGGTCAAAAATAAATGATCAAGATAAAACCAC
* * * * * * * * *
7991585 AAGTCATATGAAATGATTTGGATTAAGTCAATAATAGGTGACTAGGATAAAATCATAAGTAAAAA
131 AAGTCATATGAAATGATCTAGATTAAGCCAAGAATAAGTGACCAAGACAAAATCACAAGTAAAAA
* * * *
7991650 ATGAGGTGA-TCAAGATTAAGTCAAGGTCGAAAATAAATGATCGAC
196 ATGAAGTGACT-AAGACTAAGTCAAGGTCAAAAATAAATGACCGAC
* * * *
7991695 ATAAAATCA-TAAGTCATAAGAAATTATATAGACTGAGCTAAGATCAAGTGACCGAGATAAAATC
1 ATAAAACCACGAA-TCATAAGAAATAATATAGACTGAGCCAAGATCAAGTGACCGAGATAAAATC
* *
7991759 ATGAGTCAAAATAA-AG-TGACTTA-GA-CTGGGTCGAGGTCGAAAATAAATGA-CAAAGATAAA
65 ATGAGTCAAAA-AAGAGATGAC-TAGGATC-GAGTCGAGGTCAAAAATAAATGATC-AAGATAAA
* * * *
7991819 ACCACAAGTCATATAAAATGATCTAGATTGAGCCAAGATTAAGTGACCAAGACAAAATCACGAGT
126 ACCACAAGTCATATGAAATGATCTAGATTAAGCCAAGAATAAGTGACCAAGACAAAATCACAAGT
* * * *
7991884 AAAAAATGAAGTGACTAAGACTGAGTCATGGTTAAAAATAAATGACCGAG
191 AAAAAATGAAGTGACTAAGACTAAGTCAAGGTCAAAAATAAATGACCGAC
* * * * * * * *
7991934 ATGAAACCACGAATCATAAGAAATAATCTGGATTGAGCCCAGATTAGGTGACCGGGATAAAATCA
1 ATAAAACCACGAATCATAAGAAATAATATAGACTGAGCCAAGATCAAGTGACCGAGATAAAATCA
* *
7991999 TGAGTCAAAAAATGAGATGACTAGGATCGAGTCGAGGTTAAAAATAAATGATCAAGATAAAATCA
66 TGAGTCAAAAAA-GAGATGACTAGGATCGAGTCGAGGTCAAAAATAAATGATCAAGATAAAACCA
* *
7992064 CGAGTCATAAGAAATGATCT
130 CAAGTCATATGAAATGATCT
7992084 TAACTGAGTC
Statistics
Matches: 309, Mismatches: 66, Indels: 26
0.77 0.16 0.06
Matches are distributed among these distances:
238 5 0.02
239 235 0.76
240 12 0.04
241 55 0.18
242 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.22
Consensus pattern (240 bp):
ATAAAACCACGAATCATAAGAAATAATATAGACTGAGCCAAGATCAAGTGACCGAGATAAAATCA
TGAGTCAAAAAAGAGATGACTAGGATCGAGTCGAGGTCAAAAATAAATGATCAAGATAAAACCAC
AAGTCATATGAAATGATCTAGATTAAGCCAAGAATAAGTGACCAAGACAAAATCACAAGTAAAAA
ATGAAGTGACTAAGACTAAGTCAAGGTCAAAAATAAATGACCGAC
Found at i:7993014 original size:13 final size:11
Alignment explanation
Indices: 7992976--7993045 Score: 52
Period size: 11 Copynumber: 5.9 Consensus size: 11
7992966 TTAAGTCTTT
7992976 TTTTTCTTTTTC
1 TTTTT-TTTTTC
*
7992988 TTTGCTCTTTTT-
1 TTT--TTTTTTTC
* *
7993000 TTTTTGTTATC
1 TTTTTTTTTTC
7993011 TTTTTTTTTTC
1 TTTTTTTTTTC
7993022 TTTTTTCTATTTC
1 TTTTTT-T-TTTC
7993035 TCTTTTTTTTT
1 T-TTTTTTTTT
7993046 GCACCCTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
10 4 0.09
11 15 0.33
12 10 0.22
13 11 0.24
14 6 0.13
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:7996461 original size:25 final size:25
Alignment explanation
Indices: 7996427--7996474 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
7996417 TGAAGTCACC
7996427 AAACTATCATAACGTATAGATCCGT
1 AAACTATCATAACGTATAGATCCGT
*
7996452 AAACTATCATAACGTGTAGATCC
1 AAACTATCATAACGTATAGATCC
7996475 ATGGACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (25 bp):
AAACTATCATAACGTATAGATCCGT
Found at i:7996994 original size:31 final size:31
Alignment explanation
Indices: 7996936--7996994 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
7996926 ATGCATAAAA
*
7996936 TAAAAATAAAAATAAAATAAATGAAAAAAGT
1 TAAAAATAAAAATAAAAAAAATGAAAAAAGT
7996967 TAAAACAT-AAAATAAATAAAAAT-AAAAA
1 TAAAA-ATAAAAATAAA-AAAAATGAAAAA
7996995 GATACATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (31 bp):
TAAAAATAAAAATAAAAAAAATGAAAAAAGT
Found at i:8003002 original size:23 final size:24
Alignment explanation
Indices: 8002976--8003148 Score: 83
Period size: 22 Copynumber: 7.1 Consensus size: 24
8002966 TCTAATATAA
8002976 TAATATTAATATAATAGTATTT-T
1 TAATATTAATATAATAGTATTTAT
* *
8002999 TAATA-TATTATAATATTATTTAT
1 TAATATTAATATAATAGTATTTAT
*
8003022 TAATATT--TATAA-A-TATTAAT
1 TAATATTAATATAATAGTATTTAT
* * * **
8003042 AAATAATATTATAATATGTTAAAAATAT
1 TAATATTAATATAATA-G-T--ATTTAT
* *
8003070 TATTATATTAATA-AATAATATATAT
1 TA--ATATTAATATAATAGTATTTAT
* *
8003095 TATTTATTAATATAATAGTTATTAAT
1 TA-ATATTAATATAATAG-TATTTAT
*
8003121 ATATTATTAATATAATA-TATTATAT
1 -TAATATTAATATAATAGTATT-TAT
8003146 TAA
1 TAA
8003149 GAACATATTA
Statistics
Matches: 115, Mismatches: 19, Indels: 31
0.70 0.12 0.19
Matches are distributed among these distances:
20 11 0.10
21 1 0.01
22 24 0.21
23 12 0.10
24 16 0.14
25 13 0.11
26 20 0.17
27 3 0.03
28 4 0.03
29 4 0.03
30 7 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TAATATTAATATAATAGTATTTAT
Found at i:8003053 original size:44 final size:46
Alignment explanation
Indices: 8003003--8003193 Score: 170
Period size: 47 Copynumber: 4.3 Consensus size: 46
8002993 TATTTTTAAT
* *
8003003 ATATTATAATATTATTTATTAATATTTA-TAA-ATATTAATAAATA
1 ATATTATAATATTATTAAATAATATTTATTAATATATTAATAAATA
*
8003047 ATATTATAATA-TGTTAAA-AATA-TTA-T--TATATTAATAAATA
1 ATATTATAATATTATTAAATAATATTTATTAATATATTAATAAATA
* * *
8003087 ATA-TATATTATTTATTAATATAATAGTTATTAATATATTATTAATATA
1 ATATTATAATA-TTATTAA-ATAATATTTATTAATATATTAATAA-ATA
* ** *
8003135 ATA-TATTATATTAAGAACATATTATTTATTAATATATTAATAAATA
1 ATATTATAATATTATTAA-ATAATATTTATTAATATATTAATAAATA
*
8003181 ATATAAT-ATATTA
1 ATATTATAATATTA
8003194 ATAACATATC
Statistics
Matches: 121, Mismatches: 15, Indels: 20
0.78 0.10 0.13
Matches are distributed among these distances:
39 6 0.05
40 16 0.13
41 9 0.07
42 5 0.04
43 8 0.07
44 14 0.12
45 1 0.01
46 12 0.10
47 39 0.32
48 11 0.09
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (46 bp):
ATATTATAATATTATTAAATAATATTTATTAATATATTAATAAATA
Found at i:8003067 original size:22 final size:22
Alignment explanation
Indices: 8003003--8003197 Score: 99
Period size: 21 Copynumber: 8.9 Consensus size: 22
8002993 TATTTTTAAT
* * *
8003003 ATATTAT-AATATTATTTATTA
1 ATATTATAAATATTAATAAATA
8003024 ATATTTATAAATATTAATAAATA
1 ATA-TTATAAATATTAATAAATA
8003047 ATATTAT-AATATGT--TAAA-A
1 ATATTATAAATAT-TAATAAATA
*
8003066 ATATTAT-TATATTAATAAATA
1 ATATTATAAATATTAATAAATA
* *
8003087 ATA-TAT-ATTATTTATTAATATA
1 ATATTATAAATA-TTAATAA-ATA
*
8003109 ATAGTTATTAATATATTATTAATATA
1 ATA-TTA-TAA-ATATTAATAA-ATA
* *
8003135 ATA-TAT-TATATTAAGAACATA
1 ATATTATAAATATTAATAA-ATA
*
8003156 TTATTTATTAATATATTAATAAATA
1 ATA-TTA-TAA-ATATTAATAAATA
*
8003181 ATA-TA-ATATATTAATAA
1 ATATTATAAATATTAATAA
8003198 CATATCATTA
Statistics
Matches: 139, Mismatches: 17, Indels: 37
0.72 0.09 0.19
Matches are distributed among these distances:
18 1 0.01
19 12 0.09
20 23 0.17
21 32 0.23
22 15 0.11
23 19 0.14
24 5 0.04
25 6 0.04
26 24 0.17
27 2 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATTATAAATATTAATAAATA
Found at i:8003109 original size:26 final size:26
Alignment explanation
Indices: 8003066--8003145 Score: 69
Period size: 25 Copynumber: 3.1 Consensus size: 26
8003056 TATGTTAAAA
8003066 ATATTATTATATT-A-ATAAATAATAT
1 ATATTATT-TATTAATATAAATAATAT
*
8003091 ATATTATTTATTAATAT-AATAGT-T
1 ATATTATTTATTAATATAAATAATAT
* *
8003115 ATTAATATATTATTAATATAATATATTAT
1 A-TATTAT-TTATTAATATAA-ATAATAT
8003144 AT
1 AT
8003146 TAAGAACATA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
24 6 0.13
25 19 0.42
26 12 0.27
27 1 0.02
28 5 0.11
29 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (26 bp):
ATATTATTTATTAATATAAATAATAT
Found at i:8003135 original size:80 final size:79
Alignment explanation
Indices: 8002968--8003142 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 79
8002958 TTTTAAATTC
* * *
8002968 TAATATAATAATATTAATATAATAGTATTTTTAATATATTATAATATTATTTATTAATATTTATA
1 TAATATAAT-ATATTAATATAATAGTATTTTTAATAAATAATAATATTATTTATTAATATTAATA
8003033 AATATTAATAAATAA
65 AATATTAATAAATAA
* * *
8003048 TATTATAATATGTTAA-A-AATATTATTATATTAATAAATAATATATATTATTTATTAATA-TAA
1 TAATATAATATATTAATATAATAGTATT-T-TTAATAAATAATA-ATATTATTTATTAATATTAA
** * *
8003110 TAGTTATTAATATATTAT
63 TAAATATTAATA-AATAA
8003128 TAATATAATATATTA
1 TAATATAATATATTA
8003143 TATTAAGAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
77 8 0.10
78 2 0.03
79 29 0.37
80 40 0.51
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (79 bp):
TAATATAATATATTAATATAATAGTATTTTTAATAAATAATAATATTATTTATTAATATTAATAA
ATATTAATAAATAA
Found at i:8003182 original size:46 final size:45
Alignment explanation
Indices: 8003067--8003218 Score: 169
Period size: 47 Copynumber: 3.3 Consensus size: 45
8003057 ATGTTAAAAA
* * * * *
8003067 TATTATTATATTAATAAATAATATATATTATTTATTAATATAATAGT
1 TATTAATATATTAATAAATAATATATA-TA-TTAATAACATATTATT
* *
8003114 TATTAATATATTATTAATATAATATATTATATTAAGAACATATTATT
1 TATTAATATATTAATAA-ATAATATA-TATATTAATAACATATTATT
*
8003161 TATTAATATATTAATAAATAATATAATATATTAATAACATATCATT
1 TATTAATATATTAATAAATAATAT-ATATATTAATAACATATTATT
* *
8003207 AATTAATTTATT
1 TATTAATATATT
8003219 TATTTTATAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
46 35 0.39
47 43 0.48
48 10 0.11
49 2 0.02
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (45 bp):
TATTAATATATTAATAAATAATATATATATTAATAACATATTATT
Found at i:8003183 original size:62 final size:64
Alignment explanation
Indices: 8003091--8003212 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 64
8003081 TAAATAATAT
* * *
8003091 ATATTATTTATTAATATAATAGTTATTAATAT-AT-TATTAATATA-ATAT-ATTATATTAAGAA
1 ATATTATTTATTAATATAATAATAAATAATATAATATATTAATA-ACATATCATTA-ATTAAGAA
8003152 C
64 C
*
8003153 ATATTATTTATTAATATATTAATAAATAATATAATATATTAATAACATATCATTAATTAA
1 ATATTATTTATTAATATAATAATAAATAATATAATATATTAATAACATATCATTAATTAA
8003213 TTTATTTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
62 28 0.54
63 3 0.06
64 17 0.33
65 4 0.08
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (64 bp):
ATATTATTTATTAATATAATAATAAATAATATAATATATTAATAACATATCATTAATTAAGAAC
Found at i:8003274 original size:42 final size:42
Alignment explanation
Indices: 8003182--8003280 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
8003172 TAATAAATAA
* *
8003182 TATAATATATTAATAACATATCATTAATTAATTTATTTATTT
1 TATAATTTATTAATAACATATCAATAATTAATTTATTTATTT
8003224 TATAATTTATTAATAACATAT-AATAA-T-ATTTATTTATTCAT
1 TATAATTTATTAATAACATATCAATAATTAATTTATTTATT--T
*
8003265 ATATTATTTATTAATA
1 -TATAATTTATTAATA
8003281 TAATATTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
39 11 0.22
40 1 0.02
41 5 0.10
42 34 0.67
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (42 bp):
TATAATTTATTAATAACATATCAATAATTAATTTATTTATTT
Found at i:8004046 original size:6 final size:6
Alignment explanation
Indices: 8004035--8004064 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8004025 TTGATTTCAT
8004035 TGTCTC TGTCTC TGTCTC TGTCTC TGTCTC
1 TGTCTC TGTCTC TGTCTC TGTCTC TGTCTC
8004065 ATTTAGGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTCTC
Found at i:8009587 original size:204 final size:205
Alignment explanation
Indices: 8009232--8009645 Score: 733
Period size: 204 Copynumber: 2.0 Consensus size: 205
8009222 GGTTAATAGA
*
8009232 TGTTCATAAATTGGAATTTTTTCAGTTAACTTATAGATTGTATATTTCCATGATGTGGTTTTCAG
1 TGTTCATAAATTGGAATTTTTTCAGTTAACTTATAGATTGCATATTTCCATGATGTGGTTTTCAG
* * *
8009297 GTGTTTTTTTCCTCATTTTTTGTTTTATTTGTATTTCAGTCTCAGCATATAATTGATTTAATTAT
66 GCGTTTGTTTCCTCAATTTTTGTTTTATTTGTATTTCAGTCTCAGCATATAATTGATTTAATTAT
*
8009362 GTTTTGGCCGGTAACACAATCTTTGATGCGTTGCTGGTTGATTTCTTTTC-TTTTTTTGGATAAA
131 GTTTTGGCCGGTAACACAATCTTTGATGCGTTGCTGGTTGATTTCTTTACTTTTTTTTGGATAAA
8009426 GTACCACGAT
196 GTACCACGAT
*
8009436 TGTTCATAAATTGGACTTTTTTCAGTTAACTTATAGATTGCATATTTCCATGATGTGG-TTTCAG
1 TGTTCATAAATTGGAATTTTTTCAGTTAACTTATAGATTGCATATTTCCATGATGTGGTTTTCAG
8009500 GCGTTTGTTTCCTTCAATTTTTGTTTTATTTGTATTTCAGTCTCAGCATATAATTGATTTAATTA
66 GCGTTTGTTTCC-TCAATTTTTGTTTTATTTGTATTTCAGTCTCAGCATATAATTGATTTAATTA
*
8009565 TGTTTTGGCCGGTAATACAATCTTTGATGCGTTGCTGGTTGATTTCTTTACTTTTTTTTGGATAA
130 TGTTTTGGCCGGTAACACAATCTTTGATGCGTTGCTGGTTGATTTCTTTACTTTTTTTTGGATAA
*
8009630 AGTACCATGAT
195 AGTACCACGAT
8009641 TGTTC
1 TGTTC
8009646 TGCAATAATG
Statistics
Matches: 200, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
203 16 0.08
204 156 0.78
205 28 0.14
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (205 bp):
TGTTCATAAATTGGAATTTTTTCAGTTAACTTATAGATTGCATATTTCCATGATGTGGTTTTCAG
GCGTTTGTTTCCTCAATTTTTGTTTTATTTGTATTTCAGTCTCAGCATATAATTGATTTAATTAT
GTTTTGGCCGGTAACACAATCTTTGATGCGTTGCTGGTTGATTTCTTTACTTTTTTTTGGATAAA
GTACCACGAT
Found at i:8013573 original size:21 final size:20
Alignment explanation
Indices: 8013540--8013584 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
8013530 TATTTTTTTT
**
8013540 TTTTTCTCTTTTGAATTCTG
1 TTTTTCTCTTTTGAAAGCTG
*
8013560 TTTTTCTTTGTTTGAAAGCTG
1 TTTTTCTCT-TTTGAAAGCTG
8013581 TTTT
1 TTTT
8013585 CAGCTTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.11, C:0.11, G:0.13, T:0.64
Consensus pattern (20 bp):
TTTTTCTCTTTTGAAAGCTG
Found at i:8014395 original size:27 final size:27
Alignment explanation
Indices: 8014357--8014412 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8014347 TATCCAACAA
8014357 CAAACATGGGGCCACAAAGAAATCATG
1 CAAACATGGGGCCACAAAGAAATCATG
8014384 CAAACATGGGGCCACAAAGAAATCATG
1 CAAACATGGGGCCACAAAGAAATCATG
8014411 CA
1 CA
8014413 TATTGGCCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.11
Consensus pattern (27 bp):
CAAACATGGGGCCACAAAGAAATCATG
Done.