Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 34 of 138
Found at i:8019813 original size:2 final size:2
Alignment explanation
Indices: 8019806--8019835 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8019796 AAAGCCGTAA
8019806 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8019836 CTGTGTGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8020854 original size:24 final size:24
Alignment explanation
Indices: 8020815--8020883 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
8020805 TATGATACAT
* * *
8020815 TATTATTATTATATAAATTTCA-TA
1 TATTATTAATAAATAAATAT-ATTA
*
8020839 TATTATTAATAAATAAAAAATATTA
1 TATTATTAATAAAT-AAATATATTA
*
8020864 TTTTATTAATAAATAAATAT
1 TATTATTAATAAATAAATAT
8020884 TAATTTTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
24 18 0.49
25 19 0.51
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (24 bp):
TATTATTAATAAATAAATATATTA
Found at i:8020897 original size:23 final size:22
Alignment explanation
Indices: 8020838--8020901 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
8020828 TAAATTTCAT
*
8020838 ATATTA-TTAATAAATAAA-AA
1 ATATTATTTTATAAATAAATAA
*
8020858 ATATTATTTTATTAATAAATAA
1 ATATTATTTTATAAATAAATAA
8020880 ATATTAATTTT-TAAAATAAATA
1 ATATT-ATTTTAT-AAATAAATA
8020902 TATAAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.16
21 10 0.27
22 8 0.22
23 13 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
ATATTATTTTATAAATAAATAA
Found at i:8020906 original size:27 final size:27
Alignment explanation
Indices: 8020846--8020927 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
8020836 ATATATTATT
* * **
8020846 AATAAATAAAAAATATTATTTT--ATT
1 AATAAATAAAAATTAATATTTTAAAAA
*
8020871 AATAAATAAATATTAAT-TTTTAAAATA
1 AATAAATAAAAATTAATATTTTAAAA-A
*
8020898 AATATATAAAAATTAATATTTTAAAAA
1 AATAAATAAAAATTAATATTTTAAAAA
8020925 AAT
1 AAT
8020928 TTATTTACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 4 0.09
25 14 0.30
26 1 0.02
27 19 0.41
28 8 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (27 bp):
AATAAATAAAAATTAATATTTTAAAAA
Found at i:8021941 original size:111 final size:111
Alignment explanation
Indices: 8021814--8022016 Score: 345
Period size: 112 Copynumber: 1.8 Consensus size: 111
8021804 TTCATGGGTG
**
8021814 ATTATATAAATTAATTAAATT-AAATTTTAATTTAATTATTATTAGATTTCATTTTAAAGTTAAA
1 ATTATATAAATTAATTAAATTAAAATTAAAATTTAATTATTATTAGATTTCATTTTAAAGTTAAA
* *
8021878 ATTACTTTTCACACTATTTTAAAGTATGATATTATCATTTATGAATA
66 AATACTTTCCACACTATTTT-AAGTATGATATTATCATTTATGAATA
*
8021925 ATTATATAAATTAATTAAATTAAAATTAAAATTTAATTATTATTTGATTTCATTTTAAAGTTAAA
1 ATTATATAAATTAATTAAATTAAAATTAAAATTTAATTATTATTAGATTTCATTTTAAAGTTAAA
8021990 AATACTTTCCACACTATTTTAAGTATG
66 AATACTTTCCACACTATTTTAAGTATG
8022017 GGTAAATCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
111 28 0.33
112 58 0.67
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.47
Consensus pattern (111 bp):
ATTATATAAATTAATTAAATTAAAATTAAAATTTAATTATTATTAGATTTCATTTTAAAGTTAAA
AATACTTTCCACACTATTTTAAGTATGATATTATCATTTATGAATA
Found at i:8031333 original size:2 final size:2
Alignment explanation
Indices: 8031328--8031354 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8031318 ATATATATAT
8031328 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
8031355 AGTAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8033159 original size:17 final size:17
Alignment explanation
Indices: 8033137--8033175 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8033127 CAATAATATC
* *
8033137 ATAAAAATAAATATAAA
1 ATAAAAATAAACACAAA
*
8033154 ATAAAAATCAACACAAA
1 ATAAAAATAAACACAAA
8033171 ATAAA
1 ATAAA
8033176 TCAAAATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (17 bp):
ATAAAAATAAACACAAA
Found at i:8033174 original size:22 final size:23
Alignment explanation
Indices: 8033140--8033198 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 23
8033130 TAATATCATA
8033140 AAAAT-AAATATAAAATAAAAATC
1 AAAATCAAA-ATAAAATAAAAATC
* *
8033163 AACA-CAAAAT-AAATCAAAATC
1 AAAATCAAAATAAAATAAAAATC
8033184 AAAATCAAAATAAAA
1 AAAATCAAAATAAAA
8033199 AATAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 13 0.43
22 8 0.27
23 9 0.30
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (23 bp):
AAAATCAAAATAAAATAAAAATC
Found at i:8033188 original size:12 final size:11
Alignment explanation
Indices: 8033140--8033198 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
8033130 TAATATCATA
8033140 AAAAT-AAATAT
1 AAAATCAAA-AT
*
8033151 AAAATAAAAAT
1 AAAATCAAAAT
*
8033162 CAACA-CAAAAT
1 -AAAATCAAAAT
8033173 -AAATCAAAAT
1 AAAATCAAAAT
8033183 CAAAATCAAAAT
1 -AAAATCAAAAT
8033195 AAAA
1 AAAA
8033199 AATAAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
9 2 0.05
10 6 0.15
11 16 0.40
12 16 0.40
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATCAAAAT
Found at i:8033199 original size:12 final size:12
Alignment explanation
Indices: 8033140--8033199 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
8033130 TAATATCATA
*
8033140 AAAATAAATAT-
1 AAAATAAAAATC
8033151 AAAATAAAAATC
1 AAAATAAAAATC
*
8033163 AACACAAAATAAATC
1 AA-A-ATAA-AAATC
*
8033178 AAAATCAAAATC
1 AAAATAAAAATC
8033190 AAAATAAAAA
1 AAAATAAAAA
8033200 ATAAAAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
11 10 0.25
12 16 0.40
13 3 0.08
14 4 0.10
15 7 0.17
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAATAAAAATC
Found at i:8034362 original size:34 final size:34
Alignment explanation
Indices: 8034309--8034376 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8034299 TAATTCAAAA
* * * *
8034309 GGCTCCTTTGACTAAAGGCTATGAAATTTTAAAT
1 GGCTCCTCTGACCAAAGGCTATAAAACTTTAAAT
*
8034343 GGCTCCTCTGACCAGAGGCTATAAAACTTTAAAT
1 GGCTCCTCTGACCAAAGGCTATAAAACTTTAAAT
8034377 TTAAAAGGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (34 bp):
GGCTCCTCTGACCAAAGGCTATAAAACTTTAAAT
Found at i:8034393 original size:20 final size:20
Alignment explanation
Indices: 8034368--8034407 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8034358 AGGCTATAAA
*
8034368 ACTTTAAATTTAAAAGGCTC
1 ACTTTAAATTCAAAAGGCTC
8034388 ACTTTAAATTCAAAAGGCTC
1 ACTTTAAATTCAAAAGGCTC
8034408 CTCTGACCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (20 bp):
ACTTTAAATTCAAAAGGCTC
Found at i:8034458 original size:94 final size:95
Alignment explanation
Indices: 8034294--8034481 Score: 279
Period size: 94 Copynumber: 2.0 Consensus size: 95
8034284 AGGTAATGAA
* * * * *
8034294 ACTTTTAATTCAAAAGGCTCCTTTGACTAAAGGCTATGAAATTTTAAATGGCTCCTCTGACCAGA
1 ACTTTAAATTCAAAAGGCTCCTCTGACCAAAGGCTATGAAACTTTAAATGGCTCCTCTAACCAGA
* *
8034359 GGCTA-TAAAACTTTAAATTTAAAAGGCTC
66 GGCTATTAAAACCTTAAATTCAAAAGGCTC
* *
8034388 ACTTTAAATTCAAAAGGCTCCTCTGACCAGAGGCTATGAAACTTTAAATGGCTTCTCTAACCAGA
1 ACTTTAAATTCAAAAGGCTCCTCTGACCAAAGGCTATGAAACTTTAAATGGCTCCTCTAACCAGA
*
8034453 TGCTATTAAAACCTTAAATTCAAAAGGCT
66 GGCTATTAAAACCTTAAATTCAAAAGGCT
8034482 TTTCTGATTA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
94 62 0.75
95 21 0.25
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (95 bp):
ACTTTAAATTCAAAAGGCTCCTCTGACCAAAGGCTATGAAACTTTAAATGGCTCCTCTAACCAGA
GGCTATTAAAACCTTAAATTCAAAAGGCTC
Found at i:8046731 original size:50 final size:51
Alignment explanation
Indices: 8046586--8046734 Score: 158
Period size: 50 Copynumber: 3.0 Consensus size: 51
8046576 GATATTTTAT
* * * *
8046586 TTATTAAAT-AATTTTAAGAACATCCTGACTATTTGACGAGATCCCAAAAT
1 TTATTAAATAAATTTTAAGATCATCCTAACTATTTGACGAGATCCTAAAAA
* * * * * * *
8046636 TTATTAAACAGATTTTAAGATTATCCCAACTCTTTAACGAAATCCTAAAAA
1 TTATTAAATAAATTTTAAGATCATCCTAACTATTTGACGAGATCCTAAAAA
* * *
8046687 TT-TTAAATAAATTTTAGGATCATTCTAACTTTTTGACGAGATCCTAAA
1 TTATTAAATAAATTTTAAGATCATCCTAACTATTTGACGAGATCCTAAA
8046735 TAATATCATT
Statistics
Matches: 78, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 45 0.58
51 33 0.42
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (51 bp):
TTATTAAATAAATTTTAAGATCATCCTAACTATTTGACGAGATCCTAAAAA
Found at i:8047160 original size:18 final size:18
Alignment explanation
Indices: 8047124--8047171 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 18
8047114 AAATAATCCA
8047124 TTATAATTATTTTTTATTT
1 TTAT-ATTATTTTTTATTT
8047143 TTAT-TTATTTTATTATTT
1 TTATATTATTTT-TTATTT
8047161 TTATATTATTT
1 TTATATTATTT
8047172 CAATAAACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.26
18 10 0.37
19 10 0.37
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATATTATTTTTTATTT
Found at i:8047363 original size:23 final size:24
Alignment explanation
Indices: 8047325--8047376 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
8047315 AAACAATTCA
* *
8047325 TTATTCTTTTTTATTTTATCATTT
1 TTATTCTTTTTAATTTTATAATTT
*
8047349 TTATT-TTTTTAATTTTTTAATTT
1 TTATTCTTTTTAATTTTATAATTT
8047372 TTATT
1 TTATT
8047377 AAAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (24 bp):
TTATTCTTTTTAATTTTATAATTT
Found at i:8047632 original size:23 final size:22
Alignment explanation
Indices: 8047593--8047648 Score: 85
Period size: 23 Copynumber: 2.5 Consensus size: 22
8047583 TAAAATAACA
*
8047593 ATAATAATAATAACAATAATATC
1 ATAA-AATAAAAACAATAATATC
8047616 ATAAAATAAAAACCAATAATATC
1 ATAAAATAAAAA-CAATAATATC
8047639 ATAAAATAAA
1 ATAAAATAAA
8047649 TATAAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 7 0.23
23 24 0.77
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (22 bp):
ATAAAATAAAAACAATAATATC
Found at i:8047721 original size:6 final size:6
Alignment explanation
Indices: 8047700--8047746 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
8047690 AAAATAAATC
* * *
8047700 AAAATA AAAAGAA AAAAGA AAAAGA AAAAGA AAAGGG AAAAGA AAAA
1 AAAAGA AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA
8047747 CCTACCAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:8048781 original size:20 final size:20
Alignment explanation
Indices: 8048758--8048795 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8048748 ATGTTAATAA
*
8048758 AATTTTTATTATTTATTTCT
1 AATTTTTATTATATATTTCT
*
8048778 AATTTTTCTTATATATTT
1 AATTTTTATTATATATTT
8048796 ATAAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
AATTTTTATTATATATTTCT
Found at i:8049063 original size:20 final size:21
Alignment explanation
Indices: 8049035--8049074 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8049025 AATAATAATT
8049035 AATTAAAAT-TTTACATTATC
1 AATTAAAATATTTACATTATC
* *
8049055 AATTTAAATATTTACGTTAT
1 AATTAAAATATTTACATTAT
8049075 AATAATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.47
Consensus pattern (21 bp):
AATTAAAATATTTACATTATC
Found at i:8050706 original size:62 final size:60
Alignment explanation
Indices: 8050644--8051051 Score: 429
Period size: 62 Copynumber: 6.7 Consensus size: 60
8050634 TTGTGCAGGA
*
8050644 AAAATTGATACTTTCAACTTTT-TTCCAAAAATTGATTTTTTTTTAAA-TTTATTTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATT-ATTTTTTTTTAAATTTTA-TTTTTAAGG
* ** * * * *
8050705 AAAATTGATACTTTCAACTTTTCCTTAAAAAAAAACCTTTTTTTAAAATTTTATTTTTACGA
1 AAAATTGATACTTTCAACTTTTCC-TCAAAAATTA-TTTTTTTTTAAATTTTATTTTTAAGG
* *
8050767 AAAATTGATACTTTCAACTTTTCCTCAAAAA-AACCTTTTTTTTTGAAATCTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTA--TTTTTTTTT-AAATTTTATTTTTAAGG
** *
8050829 AAAATTGATACTTTCAACTTTTCCTCAAAAA--A-CCTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTTTAAATTTTATTTTTAAGG
** * * *
8050886 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TA--TTTTTGGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTTTAAA-TTTTATTTTTAAGG
*
8050944 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAACCTTTTTTTTTTTTGAAATTTTATTTTTAAG
1 AAAATTGATACTTTCAACTTTTCCTC---AAAAA--TTATTTTTTTTT-AAATTTTATTTTTAAG
8051009 G
60 G
*
8051010 AAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TATTTTTTT
8051052 ATTTTTATTT
Statistics
Matches: 298, Mismatches: 31, Indels: 35
0.82 0.09 0.10
Matches are distributed among these distances:
57 55 0.18
58 43 0.14
60 2 0.01
61 44 0.15
62 99 0.33
63 10 0.03
64 1 0.00
66 41 0.14
67 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTTTTAAATTTTATTTTTAAGG
Found at i:8050843 original size:124 final size:120
Alignment explanation
Indices: 8050642--8051051 Score: 480
Period size: 124 Copynumber: 3.4 Consensus size: 120
8050632 TCTTGTGCAG
* *
8050642 GAAAAATTGATACTTTCAACTTTT-TTCCAAAAATTGATTTTTTTTT-AAAT-TTATTTTTTAAG
1 GAAAAATTGATACTTTCAACTTTTCCT-CAAAAA--AATTTTTTTTTGAAATCTTA-TTTTTAAG
* *
8050704 GAAAATTGATACTTTCAACTTTTCCTTAAAAAAAAACCTTTTTTTAAAATTTTATTTTTAC
62 GAAAATTGATACTTTCAACTTTTCC-T-AAAAAAAACCTTTTTTTGAAATTTTATTTTTAA
8050765 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTGAAATCTTATTTTTAAGGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAA--TTTTTTTTTGAAATCTTATTTTTAAGGA
*
8050830 AAATTGATACTTTCAACTTTTCCT-CAAAAAACC--TTTTTGAAATTTTATTTTTAA
64 AAATTGATACTTTCAACTTTTCCTAAAAAAAACCTTTTTTTGAAATTTTATTTTTAA
* * * * *
8050884 GGAAAATTGATACTTTCAACTTTTCCTC--AAAAA-TATTTTTGGAAA-CTTTGATTTTCAAGAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTTTGAAATC-TT-ATTTTTAAGGA
8050945 AAATTGATACTTTCAACTTTTCCTCAAAAAAAACCTTTTTTTTTTTTGAAATTTTATTTTTAA
64 AAATTGATACTTTCAACTTTTCCT-AAAAAAAACC-----TTTTTTTGAAATTTTATTTTTAA
* * * *
8051008 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTT
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTTT
8051052 ATTTTTATTT
Statistics
Matches: 252, Mismatches: 16, Indels: 34
0.83 0.05 0.11
Matches are distributed among these distances:
113 1 0.00
114 12 0.05
115 33 0.13
117 13 0.05
119 46 0.18
121 9 0.04
123 40 0.16
124 86 0.34
125 3 0.01
126 4 0.02
127 5 0.02
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (120 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTTTGAAATCTTATTTTTAAGGAAA
ATTGATACTTTCAACTTTTCCTAAAAAAAACCTTTTTTTGAAATTTTATTTTTAA
Found at i:8050898 original size:181 final size:179
Alignment explanation
Indices: 8050644--8051040 Score: 539
Period size: 181 Copynumber: 2.2 Consensus size: 179
8050634 TTGTGCAGGA
** ** *
8050644 AAAATTGATACTTTCAACTTTTTTCCAAAAATTGATTTTTTTTTAAATTTATTTTTTAAGGAAAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA---A-CCTTTTTGAAATTTATTTTTTAAGGAAAA
** * * *
8050709 TTGATACTTTCAACTTTTCCTTAAAAAAAAACCTTTTTTTAAAATTTTATTTTTACGAAAAATTG
62 TTGATACTTTCAACTTTTCC-T-AAAAAAAA--TTTTTGGAAAATTTGATTTTCAAGAAAAATTG
8050774 ATACTTTCAACTTTTCCTC-AAAAAAACC-TTTTTTTTTGAAATCTTATTTTTAAGG
123 ATACTTTCAACTTTTCCTCAAAAAAAACCTTTTTTTTTTGAAATCTTATTTTTAAGG
*
8050829 AAAATTGATACTTTCAACTTTTCCTCAAAAAACCTTTTTGAAATTT-TATTTTTAAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAACCTTTTTGAAATTTAT-TTTTTAAGGAAAATTG
* * *
8050893 ATACTTTCAACTTTTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAAGAAAAATTGATACTTT
65 ATACTTTCAACTTTTCCTAAAAAAAATTTTTGGAAAATTTGATTTTCAAGAAAAATTGATACTTT
*
8050958 CAACTTTTCCTCAAAAAAAACCTTTTTTTTTTTTGAAATTTTATTTTTAAGG
130 CAACTTTTCCTCAAAAAAAACC--TTTTTTTTTTGAAATCTTATTTTTAAGG
8051010 AAAATTGATACTTTCAACTTTTCCCCAAAAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA
8051041 TATATTTTTT
Statistics
Matches: 191, Mismatches: 16, Indels: 14
0.86 0.07 0.06
Matches are distributed among these distances:
177 45 0.24
178 9 0.05
179 6 0.03
180 2 0.01
181 100 0.52
182 1 0.01
185 28 0.15
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (179 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAAACCTTTTTGAAATTTATTTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCTAAAAAAAATTTTTGGAAAATTTGATTTTCAAGAAAAATTGATACTTTC
AACTTTTCCTCAAAAAAAACCTTTTTTTTTTGAAATCTTATTTTTAAGG
Found at i:8051057 original size:66 final size:68
Alignment explanation
Indices: 8050917--8051057 Score: 191
Period size: 66 Copynumber: 2.1 Consensus size: 68
8050907 TCCTCAAAAA
*
8050917 TATTTTTGGAAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAAAACCTT
1 TATTTTTGGAAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAAAAA-CTT
8050982 TTTT
65 TTTT
* * * *
8050986 T-TTTTT-GAAA-TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATA-TT
1 TATTTTTGGAAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAA-AAACTT
8051047 TTTT
65 TTTT
8051051 TATTTTT
1 TATTTTT
8051058 ATTTAAAGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
65 7 0.11
66 46 0.71
67 6 0.09
68 5 0.08
69 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (68 bp):
TATTTTTGGAAACTTTGATTTTCAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAAAAACTTT
TTT
Found at i:8051099 original size:6 final size:5
Alignment explanation
Indices: 8051076--8051155 Score: 58
Period size: 5 Copynumber: 15.4 Consensus size: 5
8051066 AAAATTGAAT
*
8051076 AATAA AACAA AATAAA AATGAA AAT-A AA-AA AATAA AATAA AGA-AA
1 AATAA AATAA AAT-AA AAT-AA AATAA AATAA AATAA AATAA A-ATAA
* *
8051121 AGTAA AACAAA AATAAA AATAA AATAA AGATAA AA
1 AATAA AA-TAA AAT-AA AATAA AATAA A-ATAA AA
8051156 AAATATTAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
4 6 0.10
5 29 0.48
6 25 0.42
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:8051099 original size:17 final size:15
Alignment explanation
Indices: 8051076--8051156 Score: 65
Period size: 17 Copynumber: 5.1 Consensus size: 15
8051066 AAAATTGAAT
8051076 AATAAAACAAAATAAA
1 AATAAAA-AAAATAAA
* *
8051092 AATGAAAATAA-AAA
1 AATAAAAAAAATAAA
* *
8051106 AATAAAATAAAGAAA
1 AATAAAAAAAATAAA
*
8051121 AGTAAAACAAAAATAAA
1 AAT-AAA-AAAAATAAA
8051138 AATAAAATAAAGATAAA
1 AATAAAA-AAA-ATAAA
8051155 AA
1 AA
8051157 AATATTAACT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
14 11 0.22
15 9 0.18
16 15 0.29
17 16 0.31
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (15 bp):
AATAAAAAAAATAAA
Found at i:8051153 original size:11 final size:11
Alignment explanation
Indices: 8051079--8051155 Score: 68
Period size: 11 Copynumber: 6.8 Consensus size: 11
8051069 ATTGAATAAT
*
8051079 AAAACAAAATA
1 AAAATAAAATA
8051090 AAAATGAAAATAAA
1 AAAAT-AAAAT--A
8051104 AAAATAAAATA
1 AAAATAAAATA
* *
8051115 AAGA-AAAGTA
1 AAAATAAAATA
8051125 AAACA-AAAATA
1 AAA-ATAAAATA
8051136 AAAATAAAATA
1 AAAATAAAATA
*
8051147 AAGATAAAA
1 AAAATAAAA
8051156 AAATATTAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
10 8 0.15
11 31 0.56
12 5 0.09
13 5 0.09
14 6 0.11
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:8051193 original size:10 final size:10
Alignment explanation
Indices: 8051178--8051228 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
8051168 ATCCTAATCC
8051178 AATAAATAAA
1 AATAAATAAA
8051188 AATAAATAAA
1 AATAAATAAA
*
8051198 AA-AACA-AAT
1 AATAA-ATAAA
8051207 AATAAAT-AA
1 AATAAATAAA
8051216 AATAAAATAAA
1 AAT-AAATAAA
8051227 AA
1 AA
8051229 ACCTGGAGCG
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 11 0.32
10 19 0.56
11 4 0.12
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (10 bp):
AATAAATAAA
Found at i:8051560 original size:20 final size:20
Alignment explanation
Indices: 8051531--8051576 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8051521 TGAAGATTCA
*
8051531 TCGAATTCTGGGATTTATCG
1 TCGAAATCTGGGATTTATCG
* *
8051551 TCGAAATCTGGGTTTTTTCG
1 TCGAAATCTGGGATTTATCG
8051571 TCGAAA
1 TCGAAA
8051577 GTTCACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (20 bp):
TCGAAATCTGGGATTTATCG
Found at i:8052143 original size:4 final size:4
Alignment explanation
Indices: 8052120--8052219 Score: 68
Period size: 4 Copynumber: 24.8 Consensus size: 4
8052110 ATATAATTAG
* *
8052120 ATAA AT-A A-AA ATACA A-AA ATAA ATAAA ATAA A-AA ATAA AAAA AGAA
1 ATAA ATAA ATAA ATA-A ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA
*
8052166 TAAAA ATAA ATAA ATAA ATATTA ATAA ATAGTA AT-A ATAA ATAA AT-A
1 -ATAA ATAA ATAA ATAA ATA--A ATAA ATA--A ATAA ATAA ATAA ATAA
8052213 ATAA ATA
1 ATAA ATA
8052220 CATAGGATAT
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
3 15 0.19
4 48 0.61
5 9 0.11
6 7 0.09
ACGTcount: A:0.74, C:0.01, G:0.02, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:8052143 original size:18 final size:17
Alignment explanation
Indices: 8052120--8052219 Score: 82
Period size: 17 Copynumber: 5.8 Consensus size: 17
8052110 ATATAATTAG
8052120 ATAAATAAAAATACAAAA
1 ATAAATAAAAATA-AAAA
8052138 ATAAAT-AAAATAAAAA
1 ATAAATAAAAATAAAAA
*
8052154 ATAAAAAAAGAAT-AAAA
1 ATAAATAAA-AATAAAAA
8052171 ATAAAT--AAATAAATATTA
1 ATAAATAAAAATAAA-A--A
** *
8052189 ATAAATAGTAATAATAA
1 ATAAATAAAAATAAAAA
8052206 ATAAATAATAAATA
1 ATAAATAA-AAATA
8052220 CATAGGATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
14 3 0.04
15 3 0.04
16 10 0.15
17 25 0.37
18 20 0.30
19 1 0.01
20 5 0.07
ACGTcount: A:0.74, C:0.01, G:0.02, T:0.23
Consensus pattern (17 bp):
ATAAATAAAAATAAAAA
Found at i:8052148 original size:23 final size:23
Alignment explanation
Indices: 8052122--8052175 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
8052112 ATAATTAGAT
8052122 AAATAAAAATACAAAAATA-AAT-A
1 AAATAAAAATA-AAAAA-AGAATAA
8052145 AAATAAAAAATAAAAAAAGAATAA
1 AAAT-AAAAATAAAAAAAGAATAA
8052169 AAATAAA
1 AAATAAA
8052176 TAAATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 1 0.04
23 15 0.54
24 12 0.43
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (23 bp):
AAATAAAAATAAAAAAAGAATAA
Found at i:8052161 original size:24 final size:24
Alignment explanation
Indices: 8052122--8052296 Score: 76
Period size: 25 Copynumber: 7.2 Consensus size: 24
8052112 ATAATTAGAT
*
8052122 AAAT-AAAAATACAAAAATAAATA
1 AAATAAAAAATAAAAAAATAAATA
*
8052145 AAATAAAAAATAAAAAAA-GAATAA
1 AAATAAAAAATAAAAAAATAAAT-A
*
8052169 AAATAAATAAATAAATATTAATAAATA
1 AAATAAA-AAATAAA-A-AAATAAATA
* * *
8052196 GTAATAATAAAT-AAATAATAAAT-
1 -AAATAAAAAATAAAAAAATAAATA
* ** * *
8052219 ACATAGGATATAAAGGAAAATATAT-
1 AAATAAAAAATAAA--AAAATAAATA
* *
8052244 ACATAAAAAATAAAAATA-AAATA
1 AAATAAAAAATAAAAAAATAAATA
* *
8052267 AAAGGAACAAAATAAAATACA-AAATA
1 AAA-TAA-AAAATAAAA-AAATAAATA
8052293 AAAT
1 AAAT
8052297 TGGACTTACC
Statistics
Matches: 116, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
22 9 0.08
23 14 0.12
24 30 0.26
25 35 0.30
26 13 0.11
27 7 0.06
28 8 0.07
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (24 bp):
AAATAAAAAATAAAAAAATAAATA
Found at i:8052290 original size:12 final size:12
Alignment explanation
Indices: 8052250--8052296 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
8052240 ATATACATAA
*
8052250 AAAATAAAA-AT
1 AAAATAAAATAC
*
8052261 AAAATAAAAGGAAC
1 AAAATAAAA--TAC
8052275 AAAATAAAATAC
1 AAAATAAAATAC
8052287 AAAATAAAAT
1 AAAATAAAAT
8052297 TGGACTTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 12 0.39
14 10 0.32
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (12 bp):
AAAATAAAATAC
Found at i:8052453 original size:8 final size:8
Alignment explanation
Indices: 8052437--8052489 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
8052427 CAACTCAACA
*
8052437 TTTTCATT
1 TTTTTATT
8052445 TTTTTATT
1 TTTTTATT
8052453 TTTGTT-TT
1 TTT-TTATT
*
8052461 TTTTTGTTT
1 TTTTT-ATT
*
8052470 TTTTTGTT
1 TTTTTATT
8052478 TTTTTATT
1 TTTTTATT
8052486 TTTT
1 TTTT
8052490 GACCAAAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
7 2 0.05
8 28 0.72
9 9 0.23
ACGTcount: A:0.06, C:0.02, G:0.06, T:0.87
Consensus pattern (8 bp):
TTTTTATT
Found at i:8052466 original size:10 final size:10
Alignment explanation
Indices: 8052446--8052482 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
8052436 ATTTTCATTT
8052446 TTTTATTTTTG
1 TTTT-TTTTTG
8052457 TTTTTTTTTG
1 TTTTTTTTTG
8052467 -TTTTTTTTG
1 TTTTTTTTTG
8052476 TTTTTTT
1 TTTTTTT
8052483 ATTTTTTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.36
10 12 0.48
11 4 0.16
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:8052590 original size:41 final size:41
Alignment explanation
Indices: 8052518--8052752 Score: 335
Period size: 41 Copynumber: 5.6 Consensus size: 41
8052508 CAGAGGTTCA
** * * *
8052518 ACGACTTTGAGAAACATAAACGGCTCCTCTAACCAGAGGCTCA
1 ACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACC
*
8052561 ACAACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACC
*
8052602 ACGACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACC
*
8052644 ACGATTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGGAAAA-TAAATTGCTCCTCTAAACAGAGGCACC
* *
8052686 ACAACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 ACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACC
*
8052727 ACGACTTTGGAAAGTAAATTGCTCCT
1 ACGACTTTGGAAAATAAATTGCTCCT
8052753 TGACAATCAT
Statistics
Matches: 174, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
41 85 0.49
42 81 0.47
43 8 0.05
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (41 bp):
ACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACC
Found at i:8052638 original size:83 final size:82
Alignment explanation
Indices: 8052518--8052752 Score: 353
Period size: 83 Copynumber: 2.8 Consensus size: 82
8052508 CAGAGGTTCA
** * * * *
8052518 ACGACTTTGAGAAACATAAACGGCTCCTCTAACCAGAGGCTCAACAACTTTGGAAAATAAATTGC
1 ACGACTTTGA-AAA-ATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGC
8052583 TCCTCTAAACAGAGGCACC
64 TCCTCTAAACAGAGGCACC
*
8052602 ACGACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGGAAAAGTAAATTGC
1 ACGAC-TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATTGC
8052667 TCCTCTAAACAGAGGCACC
64 TCCTCTAAACAGAGGCACC
* *
8052686 ACAACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTC
1 ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTC
8052751 CT
66 CT
8052753 TGACAATCAT
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
82 12 0.09
83 83 0.60
84 39 0.28
85 5 0.04
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (82 bp):
ACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTC
CTCTAAACAGAGGCACC
Found at i:8053330 original size:22 final size:22
Alignment explanation
Indices: 8053282--8053340 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
8053272 GGTTTCACTC
8053282 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
* **
8053305 -TCAAAGATTTTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
8053326 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
8053341 CAAAACATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:8058438 original size:61 final size:59
Alignment explanation
Indices: 8058373--8058897 Score: 530
Period size: 64 Copynumber: 8.7 Consensus size: 59
8058363 TTGTGCATGG
* * *
8058373 AAAATTGATACTTTTAATTTTTTCC-CAAAAATTGATTTTTTTTTAAA-TTTATTTTTTAAGA
1 AAAATTGATACTTTCAA-CTTTTCCTCAAAAA-T-ATTTTTTTTGAAATTTTA-TTTTTAAGA
* * * *
8058434 AAAATTGATACTTTCAACTTTTTCT-AAAAAAATATTTTTTTGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTTG-AAATTTT-ATTTTTAAGA
* * * * *
8058495 AAAATTGATACTTTCAATTTTTCCTTAAAAAAAACCTTTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-TCAAAAATA-TTTTTTTTGAAATTTTATTTTTAAGA
* * * *
8058556 AAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTTTAAAATCTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTC--AAAAA---TATTTTTTTTGAAATTTTATTTTTAAGA
* *
8058620 AAAATTGATACTTTCAACTTTTCCTCAAAAATA---TTTTTGAAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTG-AAA-TTTTATTTTTAAGA
** *
8058678 AAAATTGATACTTTCAACTTTTCCTCAAAAA-A-CCTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAAGA
* * * *
8058735 AAAATTGATACTTTCAACTTTTCCTTAAAAATA--TTTTTGGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAA-TTTTATTTTTAAGA
* *
8058793 AAAATTGATACTTTCAACTTTTCCTCAAAAAAAAACCTTTTTTTTTTAAATTTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTC--AAAAATA---TTTTTTTTGAAATTTTATTTTTAAGA
*
8058857 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT
8058898 ATTTTTATTT
Statistics
Matches: 397, Mismatches: 41, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
56 5 0.01
57 53 0.13
58 83 0.21
59 22 0.06
60 20 0.05
61 80 0.20
62 25 0.06
63 15 0.04
64 86 0.22
65 8 0.02
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAAGA
Found at i:8058514 original size:122 final size:120
Alignment explanation
Indices: 8058371--8058896 Score: 599
Period size: 122 Copynumber: 4.3 Consensus size: 120
8058361 TCTTGTGCAT
* * *
8058371 GGAAAATTGATACTTTTAATTTTTTCC-CAAAAATTGATTTTTTTTTAAA-TTT-ATTTTTTAAG
1 GGAAAATTGATACTTTCAA-TTTTTCCTCAAAAA-T-A-TTTTTTTGAAACTTTGA-TTTTCAAG
* *
8058433 AAAAATTGATACTTTCAACTTTTTCT-AAAAAAATATTTTTTTGAAAATTTTGATTTTCAA
61 AAAAATTGATACTTTCAACTTTTCCTCAAAAAAATATTTTTTTGAAAATTTT-ATTTTTAA
* * * * *
8058493 GGAAAATTGATACTTTCAATTTTTCCTTAAAAAAAACCTTTTTTTGAAA-TTTTATTTTTAAGGA
1 GGAAAATTGATACTTTCAATTTTTCC-TCAAAAATA--TTTTTTTGAAACTTTGATTTTCAAGAA
* * *
8058557 AAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTTTTTAAAATCTTATTTTTAA
63 AAATTGATACTTTCAACTTTTCCTCAAAAAAA---TATTTTTTTGAAAATTTTATTTTTAA
*
8058618 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTGAAAACTTTGATTTTCAAGAAAA
1 GGAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTG-AAACTTTGATTTTCAAGAAAA
**
8058681 ATTGATACTTTCAACTTTTCCTC--AAAAA-ACCTTTTTG-AAATTTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCTCAAAAAAATATTTTTTTGAAAATTTTATTTTTAA
* * *
8058733 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTGGAAACTTTGATTTTCAAGAAAAA
1 GGAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTCAAGAAAAA
* **
8058797 TTGATACTTTCAACTTTTCCTCAAAAAAAAACCTTTTTTTTTTAAATTTTATTTTTAA
66 TTGATACTTTCAACTTTTCCTCAAAAAAATA---TTTTTTTGAAAATTTTATTTTTAA
* * *
8058855 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTT
8058897 TATTTTTATT
Statistics
Matches: 354, Mismatches: 31, Indels: 37
0.84 0.07 0.09
Matches are distributed among these distances:
115 92 0.26
116 10 0.03
117 5 0.01
118 1 0.00
120 11 0.03
121 16 0.05
122 147 0.42
123 18 0.05
124 7 0.02
125 32 0.09
126 15 0.04
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTCAAGAAAAA
TTGATACTTTCAACTTTTCCTCAAAAAAATATTTTTTTGAAAATTTTATTTTTAA
Found at i:8058932 original size:5 final size:5
Alignment explanation
Indices: 8058922--8059007 Score: 72
Period size: 5 Copynumber: 16.8 Consensus size: 5
8058912 AAAATTGAAT
8058922 AATAA AATAA AATAAA AATAA AA-ATA AA-AA AATAA AATAA AGA-AA
1 AATAA AATAA AAT-AA AATAA AATA-A AATAA AATAA AATAA A-ATAA
* *
8058967 AGTAA AACAAA AATAAA AATAA AATAA AGATAA AA-AA AATA
1 AATAA AA-TAA AAT-AA AATAA AATAA A-ATAA AATAA AATA
8059008 TTAACTAATC
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
4 8 0.12
5 40 0.59
6 20 0.29
ACGTcount: A:0.80, C:0.01, G:0.03, T:0.15
Consensus pattern (5 bp):
AATAA
Found at i:8058941 original size:6 final size:6
Alignment explanation
Indices: 8058925--8059002 Score: 70
Period size: 6 Copynumber: 12.7 Consensus size: 6
8058915 ATTGAATAAT
* * *
8058925 AAAAT- AAAATA AAAATA AAAATA AAAAAA TAAAATA AAGAAAA GTAAAACA
1 AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA AA-AATA --AAAATA
*
8058976 AAAATA AAAAT- AAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
8059003 AAATATTAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
5 10 0.17
6 37 0.62
7 8 0.13
8 3 0.05
9 2 0.03
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:8058941 original size:11 final size:11
Alignment explanation
Indices: 8058925--8059005 Score: 78
Period size: 11 Copynumber: 7.3 Consensus size: 11
8058915 ATTGAATAAT
8058925 AAAATAAAATA
1 AAAATAAAATA
8058936 AAAATAAAAATAAA
1 AAAAT-AAAAT--A
8058950 AAAATAAAATA
1 AAAATAAAATA
* *
8058961 AAGA-AAAGTA
1 AAAATAAAATA
8058971 AAACA-AAAATA
1 AAA-ATAAAATA
8058982 AAAATAAAATA
1 AAAATAAAATA
*
8058993 AAGATAAAA-A
1 AAAATAAAATA
8059003 AAA
1 AAA
8059006 TATTAACTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
10 11 0.19
11 32 0.54
12 5 0.08
13 5 0.08
14 6 0.10
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:8059034 original size:4 final size:4
Alignment explanation
Indices: 8059025--8059068 Score: 58
Period size: 4 Copynumber: 11.5 Consensus size: 4
8059015 ATCCTAATCT
8059025 AATA AATA AA-A AAT- AAT- AATA AATAA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AA
8059069 AAACCTGGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 9 0.24
4 24 0.65
5 4 0.11
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:8059046 original size:17 final size:17
Alignment explanation
Indices: 8058919--8059071 Score: 72
Period size: 17 Copynumber: 8.9 Consensus size: 17
8058909 AAAAAAATTG
*
8058919 AATAATAAAATAAAATAAA
1 AATAAT-AAATAAAA-AAT
8058938 AATAA-AAATAAAAAAAT
1 AATAATAAAT-AAAAAAT
*
8058955 AA-AATAAAGAAAAGTAA-
1 AATAATAAATAAAA--AAT
*
8058972 AACAA-AAAT-AAAAAT
1 AATAATAAATAAAAAAT
8058987 AA-AATAAAGATAAAAAA-
1 AATAAT-AA-ATAAAAAAT
* * **
8059004 AATATTAACTAATCCTAAT
1 AATAATAAATAA--AAAAT
*
8059023 -CTAATAAATAAAAAAT
1 AATAATAAATAAAAAAT
*
8059039 AATAATAAATAAAATA-
1 AATAATAAATAAAAAAT
8059055 AATAAATAAATAAAAAA
1 AAT-AATAAATAAAAAA
8059072 CCTGGAGCGG
Statistics
Matches: 103, Mismatches: 15, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
14 4 0.04
15 2 0.02
16 20 0.19
17 47 0.46
18 25 0.24
19 5 0.05
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (17 bp):
AATAATAAATAAAAAAT
Found at i:8059952 original size:36 final size:34
Alignment explanation
Indices: 8059895--8059961 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
8059885 AATAAAAATC
*
8059895 AAATAAAAAAAATAATAGATAATTA-AAAAAGAT
1 AAATAAAAAAAATAATAGATAAATATAAAAAGAT
*
8059928 AAATCAAAAAAATATTATAGGATAAATATAAAAA
1 AAAT-AAAAAAA-ATAATA-GATAAATATAAAAA
8059962 TAATAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 4 0.14
34 7 0.25
35 5 0.18
36 7 0.25
37 5 0.18
ACGTcount: A:0.70, C:0.01, G:0.06, T:0.22
Consensus pattern (34 bp):
AAATAAAAAAAATAATAGATAAATATAAAAAGAT
Found at i:8059969 original size:14 final size:14
Alignment explanation
Indices: 8059952--8060087 Score: 57
Period size: 14 Copynumber: 9.1 Consensus size: 14
8059942 TTATAGGATA
8059952 AATATAAAAATAAT
1 AATATAAAAATAAT
*
8059966 AATAATAACATATATAT
1 AAT-ATAA-AAATA-AT
*
8059983 AAT-TAGATAAATAAA
1 AATATA-A-AAATAAT
*
8059998 AATACAAAAATAAAT
1 AATATAAAAAT-AAT
*
8060013 AAAATATAAAATAA-
1 AATATA-AAAATAAT
*
8060027 AA-ATAAAGAATAAA
1 AATATAAA-AATAAT
8060041 AATA-AATAAATATAT
1 AATATAA-AAATA-AT
* *
8060056 ATTAATAAATAGTAAT
1 AAT-ATAAA-AATAAT
8060072 AATA-AATAAATAAT
1 AATATAA-AAATAAT
8060086 AA
1 AA
8060088 ATACATAGGA
Statistics
Matches: 93, Mismatches: 13, Indels: 32
0.67 0.09 0.23
Matches are distributed among these distances:
12 2 0.02
13 8 0.09
14 26 0.28
15 26 0.28
16 21 0.23
17 10 0.11
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.27
Consensus pattern (14 bp):
AATATAAAAATAAT
Found at i:8060012 original size:18 final size:17
Alignment explanation
Indices: 8059989--8060090 Score: 82
Period size: 18 Copynumber: 5.8 Consensus size: 17
8059979 ATATAATTAG
8059989 ATAAATAAAAATACAAAA
1 ATAAATAAAAATA-AAAA
8060007 ATAAATAAAATATAAAATA
1 ATAAATAAAA-ATAAAA-A
8060026 A-AAATAAAGAAT-AAAA
1 ATAAATAAA-AATAAAAA
* **
8060042 ATAAATAAATATATATTA
1 ATAAATAAAAATA-AAAA
** *
8060060 ATAAATAGTAATAATAA
1 ATAAATAAAAATAAAAA
8060077 ATAAATAATAAATA
1 ATAAATAA-AAATA
8060091 CATAGGATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
16 4 0.06
17 20 0.29
18 38 0.56
19 6 0.09
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (17 bp):
ATAAATAAAAATAAAAA
Found at i:8060021 original size:7 final size:6
Alignment explanation
Indices: 8059991--8060046 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
8059981 ATAATTAGAT
*
8059991 AAATAA AAATACA AAA-AT AAAT-A AAATATA AAATAA AAATAA AGAATAA
1 AAATAA AAATA-A AAATAA AAATAA AAATA-A AAATAA AAATAA A-AATAA
8060040 AAATAA A
1 AAATAA A
8060047 TAAATATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
5 7 0.16
6 20 0.47
7 16 0.37
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:8060045 original size:13 final size:12
Alignment explanation
Indices: 8059991--8060046 Score: 62
Period size: 13 Copynumber: 4.6 Consensus size: 12
8059981 ATAATTAGAT
8059991 AAATAAAAATACA
1 AAATAAAAATA-A
*
8060004 AAA-ATAAAT-A
1 AAATAAAAATAA
8060014 AAATATAAAATAA
1 AAATA-AAAATAA
8060027 AAATAAAGAATAA
1 AAATAAA-AATAA
8060040 AAATAAA
1 AAATAAA
8060047 TAAATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 4 0.11
11 1 0.03
12 11 0.30
13 21 0.57
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:8060048 original size:30 final size:30
Alignment explanation
Indices: 8059991--8060048 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8059981 ATAATTAGAT
*
8059991 AAATAAAAATACAAAAATAAATAAAATATA
1 AAATAAAAATACAAAAATAAAAAAAATATA
*
8060021 AAATAAAAATA-AAGAATAAAAATAAATA
1 AAATAAAAATACAAAAATAAAAA-AAATA
8060049 AATATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (30 bp):
AAATAAAAATACAAAAATAAAAAAAATATA
Found at i:8060066 original size:35 final size:34
Alignment explanation
Indices: 8059963--8060084 Score: 108
Period size: 35 Copynumber: 3.4 Consensus size: 34
8059953 ATATAAAAAT
* *
8059963 AATAATAATAACATATATATAATTAGATAAATAAA-
1 AATAAAAATAA-ATAAATATAATTA-ATAAATAAAG
*
8059998 AATACAAAAATAAATAAAATATAAAATAA-AAATAAAG
1 AAT--AAAAATAAAT-AAATAT-AATTAATAAATAAAG
8060035 AATAAAAATAAATAAATATATATTAATAAAT--AG
1 AATAAAAATAAATAAATATA-ATTAATAAATAAAG
8060068 TAATAATAAATAAATAA
1 -AATAA-AAATAAATAA
8060085 TAAATACATA
Statistics
Matches: 74, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
33 3 0.04
34 15 0.20
35 27 0.36
36 9 0.12
37 16 0.22
38 4 0.05
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (34 bp):
AATAAAAATAAATAAATATAATTAATAAATAAAG
Found at i:8060072 original size:24 final size:24
Alignment explanation
Indices: 8060005--8060090 Score: 67
Period size: 24 Copynumber: 3.7 Consensus size: 24
8059995 AAAAATACAA
*
8060005 AAATAAATAA-AATATA-AAATAA-
1 AAATAAATAATAA-ATAGTAATAAT
* *
8060027 AAATAAAGAATAAA-AAT-A-AAT
1 AAATAAATAATAAATAGTAATAAT
8060048 AAATATATATTAATAAATAGTAATAAT
1 AAATA-A-A-TAATAAATAGTAATAAT
8060075 AAATAAATAATAAATA
1 AAATAAATAATAAATA
8060091 CATAGGATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
20 2 0.04
21 7 0.14
22 11 0.22
23 3 0.06
24 15 0.29
25 3 0.06
26 2 0.04
27 8 0.16
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATAAATAATAAATAGTAATAAT
Found at i:8060138 original size:18 final size:18
Alignment explanation
Indices: 8059991--8060166 Score: 74
Period size: 18 Copynumber: 9.4 Consensus size: 18
8059981 ATAATTAGAT
*
8059991 AAATAAAAATACAAA-AAT
1 AAATAAAAATA-AAATAAA
8060009 AAATAAAATATAAAAT-AA
1 AAATAAAA-ATAAAATAAA
8060027 AAATAAAGAATAAAAATAAA
1 AAATAAA-AAT-AAAATAAA
* * *
8060047 TAAATATATAT-TAATAAA
1 -AAATAAAAATAAAATAAA
* * *
8060065 TAGTAATAAT-AAATAAA
1 AAATAAAAATAAAATAAA
* ** *
8060082 TAATAAATACATAGGATATA
1 AAATAAA-A-ATAAAATAAA
** *
8060102 AAGGAAAATATATACATAAA
1 AAATAAAA-ATA-AAATAAA
8060122 AAATAAAAATAAAATAAA
1 AAATAAAAATAAAATAAA
* *
8060140 AGGAA-CAAAATAAAATACA
1 A--AATAAAAATAAAATAAA
8060159 AAATAAAA
1 AAATAAAA
8060167 TTGGACTTAC
Statistics
Matches: 117, Mismatches: 28, Indels: 26
0.68 0.16 0.15
Matches are distributed among these distances:
17 18 0.15
18 38 0.32
19 31 0.26
20 24 0.21
21 6 0.05
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (18 bp):
AAATAAAAATAAAATAAA
Found at i:8060161 original size:12 final size:12
Alignment explanation
Indices: 8060121--8060167 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
8060111 ATATACATAA
*
8060121 AAAATAAAA-AT
1 AAAATAAAATAC
*
8060132 AAAATAAAAGGAAC
1 AAAATAAAA--TAC
8060146 AAAATAAAATAC
1 AAAATAAAATAC
8060158 AAAATAAAAT
1 AAAATAAAAT
8060168 TGGACTTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 12 0.39
14 10 0.32
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (12 bp):
AAAATAAAATAC
Found at i:8069932 original size:94 final size:95
Alignment explanation
Indices: 8069806--8070047 Score: 389
Period size: 94 Copynumber: 2.5 Consensus size: 95
8069796 ATTAATAAAA
* * *
8069806 TTATAAAATATGAAAAAAGATTAAAATTAATATAGTAATATTTTATGATTTTTTTTATCTTTTTA
1 TTATAAAATTTG--AAAATATTAAAATTAATATAATAATATTTTATGATTTTTTTTATCTTTTTA
8069871 TCATTTAAGTTAAACTAAGTGAAATAATTAAT
64 TCATTTAAGTTAAACTAAGTGAAATAATTAAT
8069903 TTATAAAATTTGAAAATATT-AAATTAATATAATAATATTTTATGATTTTTTTTATCTTTTTATC
1 TTATAAAATTTGAAAATATTAAAATTAATATAATAATATTTTATGATTTTTTTTATCTTTTTATC
* *
8069967 ATTTTAGTTAAATTAAGTGAAATAATTAAT
66 ATTTAAGTTAAACTAAGTGAAATAATTAAT
*
8069997 TTATGAAATTTGAAAATATTAAAATTAATATAATTAA-ATTTTATGATTTTT
1 TTATAAAATTTGAAAATATTAAAATTAATATAA-TAATATTTTATGATTTTT
8070048 ATGAAAAAAT
Statistics
Matches: 137, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
94 90 0.66
95 33 0.24
96 3 0.02
97 11 0.08
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.48
Consensus pattern (95 bp):
TTATAAAATTTGAAAATATTAAAATTAATATAATAATATTTTATGATTTTTTTTATCTTTTTATC
ATTTAAGTTAAACTAAGTGAAATAATTAAT
Found at i:8070053 original size:42 final size:42
Alignment explanation
Indices: 8070007--8070089 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
8069997 TTATGAAATT
* *
8070007 TGAAAATATTAAAATTAATATAATTAA-ATTTTATGATTTTTA
1 TGAAAAAATTAAAATTAATATAA-TAATATTTTATGACTTTTA
*
8070049 TGAAAAAATTGAAATTAATATAATAATATTTTATGACTTTT
1 TGAAAAAATTAAAATTAATATAATAATATTTTATGACTTTT
8070090 CATTTATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 3 0.08
42 34 0.92
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (42 bp):
TGAAAAAATTAAAATTAATATAATAATATTTTATGACTTTTA
Found at i:8071237 original size:16 final size:16
Alignment explanation
Indices: 8071220--8071276 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 16
8071210 TTTTTTGTTT
8071220 TTTAATTTTATATAT-
1 TTTAATTTTATATATA
8071235 TTTAAAATTTT-TAT-TA
1 TTT--AATTTTATATATA
*
8071251 TTTATATTTTA-AAATA
1 TTTA-ATTTTATATATA
8071267 TTTAATTTTA
1 TTTAATTTTA
8071277 ATTAAAGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
14 1 0.03
15 16 0.46
16 12 0.34
17 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTAATTTTATATATA
Found at i:8071245 original size:23 final size:23
Alignment explanation
Indices: 8071219--8071276 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
8071209 TTTTTTTGTT
8071219 TTTTAATTTTATATATTTTAAAA
1 TTTTAATTTTATATATTTTAAAA
*
8071242 TTTTTATTATT-TATATTTTAAAA
1 TTTTAATT-TTATATATTTTAAAA
8071265 TATTTAATTTTA
1 T-TTTAATTTTA
8071277 ATTAAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 22 0.73
24 8 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTAATTTTATATATTTTAAAA
Found at i:8074315 original size:34 final size:34
Alignment explanation
Indices: 8074277--8074356 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
8074267 TTTGAAGACT
*
8074277 CATTTTTGAAAACTCTTGAAA-GATTCTAAACATG
1 CATTTTTGAAAACTCTT-AAAGGATTCTAAACAAG
** *
8074311 CATTTTCAAAAATTCTTAAAGGATTCTAAACAAG
1 CATTTTTGAAAACTCTTAAAGGATTCTAAACAAG
*
8074345 TATTTTTTGAAA
1 CA-TTTTTGAAA
8074357 CCTTCAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
33 3 0.08
34 27 0.73
35 7 0.19
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (34 bp):
CATTTTTGAAAACTCTTAAAGGATTCTAAACAAG
Found at i:8075288 original size:12 final size:11
Alignment explanation
Indices: 8075267--8075313 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
8075257 AAATCTATTT
8075267 AAATATATTAA
1 AAATATATTAA
8075278 AAATCATATTAA
1 AAAT-ATATTAA
8075290 AAGATATA-TAA
1 AA-ATATATTAA
8075301 AAA-A-ATTAA
1 AAATATATTAA
8075310 AAAT
1 AAAT
8075314 TAAAAATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 1 0.03
9 7 0.22
10 1 0.03
11 9 0.28
12 12 0.38
13 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AAATATATTAA
Found at i:8075296 original size:22 final size:22
Alignment explanation
Indices: 8075257--8075303 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8075247 TTTTATACGT
* *
8075257 AAATCTATTTAAATATAT-TAA
1 AAATCTATTAAAAGATATATAA
8075278 AAATCATATTAAAAGATATATAA
1 AAATC-TATTAAAAGATATATAA
8075301 AAA
1 AAA
8075304 AATTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 11 0.50
23 6 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATCTATTAAAAGATATATAA
Found at i:8090601 original size:39 final size:39
Alignment explanation
Indices: 8090553--8090632 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
8090543 AACCAATCCT
* *
8090553 TTCAGTCCCACTAAGAATTCTGGTTAATTTTCCATTTTG
1 TTCAATCCCACTAAGAATTCTGGTAAATTTTCCATTTTG
* *
8090592 TTCAATCCCACTAAGCATTTTGGTAAATTTTCCATTTTG
1 TTCAATCCCACTAAGAATTCTGGTAAATTTTCCATTTTG
8090631 TT
1 TT
8090633 GACTGACAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.45
Consensus pattern (39 bp):
TTCAATCCCACTAAGAATTCTGGTAAATTTTCCATTTTG
Found at i:8095388 original size:13 final size:13
Alignment explanation
Indices: 8095370--8095394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8095360 TTTAATATTG
8095370 AATTATATTTGAT
1 AATTATATTTGAT
8095383 AATTATATTTGA
1 AATTATATTTGA
8095395 AAAAAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
AATTATATTTGAT
Found at i:8097169 original size:3 final size:3
Alignment explanation
Indices: 8097161--8097217 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
8097151 CAATAAACCT
8097161 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
8097209 TGA TGA TGA
1 TGA TGA TGA
8097218 CGATCATTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:8103497 original size:3 final size:3
Alignment explanation
Indices: 8103489--8103526 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8103479 TAACTGGAAT
8103489 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8103527 TTCATGATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8104860 original size:86 final size:86
Alignment explanation
Indices: 8104706--8104869 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 86
8104696 ATTTATTTTT
* * * * * *
8104706 TTTTGGATTATTTTTCTATTATATTTGAGTTTGATATATGTTTTTAATTTTGGGTTAGTTAATGT
1 TTTTGGATTAATTTTATATTATATTTAAGTTTAATATATGTTTTTAATTTTGAGTTAGTTAATAT
8104771 TGAGCTTCAAAATTTTTAAAA
66 TGAGCTTCAAAATTTTTAAAA
* * * *
8104792 TTTTGGTTTAATTTTATATTATATTTAAGTTTAATTTATGTTTTTTAA-TTTGAGTTATTTGATA
1 TTTTGGATTAATTTTATATTATATTTAAGTTTAATATATG-TTTTTAATTTTGAGTTAGTTAATA
* *
8104856 TTGAGTTTGAAAAT
65 TTGAGCTTCAAAAT
8104870 GTTAGAGAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
86 58 0.89
87 7 0.11
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (86 bp):
TTTTGGATTAATTTTATATTATATTTAAGTTTAATATATGTTTTTAATTTTGAGTTAGTTAATAT
TGAGCTTCAAAATTTTTAAAA
Found at i:8105151 original size:2 final size:2
Alignment explanation
Indices: 8105144--8105170 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8105134 ATGGACTACT
8105144 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8105171 GATTGCTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8107729 original size:86 final size:84
Alignment explanation
Indices: 8107582--8107737 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 84
8107572 TCTATTTACA
* * * * **
8107582 AAAATATAAAAGAATTATTTAAGGTATTTTTTGTATAAAAATATCTTAAATAATCCTTTTATAAA
1 AAAATAAAAAAGAATTATTTAAGGTATTTTCTGTAAAAAAAAATCTTAAATAATCAATTTATAAA
8107647 AATATTAACCCTAAATCCT
66 AATATTAACCCTAAATCCT
8107666 AAAATAAAAAAG-ATTATTTAAGG-AGTTTTCTGTAAAAAAAAAATGCTTTAAATAATCAATTTA
1 AAAATAAAAAAGAATTATTTAAGGTA-TTTTCTGT-AAAAAAAAAT-C-TTAAATAATCAATTTA
8107729 TAAAAATAT
62 TAAAAATAT
8107738 AAAATAATTA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
82 1 0.02
83 18 0.29
84 19 0.31
85 1 0.02
86 23 0.37
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (84 bp):
AAAATAAAAAAGAATTATTTAAGGTATTTTCTGTAAAAAAAAATCTTAAATAATCAATTTATAAA
AATATTAACCCTAAATCCT
Found at i:8107829 original size:63 final size:61
Alignment explanation
Indices: 8107666--8107863 Score: 204
Period size: 63 Copynumber: 3.1 Consensus size: 61
8107656 CCTAAATCCT
* **
8107666 AAAATA-AAAAAGATTATTTAAGGAGTTTTCTGTAAAAAAAAAATGCTTTAAATAATCAATTTAT
1 AAAATATAAAAAGATTATTTAAGGAGTTTT-TGT-ACAAAAAAAT-C-TTAAATAATTTA-TTAT
8107730 A
61 A
*
8107731 AAAATATAAAATA-ATTAATTTAAGGCA-TTTTTGTACAAAAAATATCTTAAATAATTTATTAAA
1 AAAATATAAAA-AGATT-ATTTAAGG-AGTTTTTGTACAAAAAA-ATCTTAAATAATTTATTATA
* ** *
8107794 AAAATATAAAAAGATTATTTAAAGAGTTTTATGTACAAAAAAGCCTTAAATAATTTTTTTATA
1 AAAATATAAAAAGATTATTTAAGGAGTTTT-TGTACAAAAAAATCTTAAATAA-TTTATTATA
8107857 AAAATAT
1 AAAATAT
8107864 TAACTCTAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
61 1 0.01
62 21 0.18
63 43 0.37
64 10 0.09
65 14 0.12
66 12 0.10
67 13 0.11
68 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (61 bp):
AAAATATAAAAAGATTATTTAAGGAGTTTTTGTACAAAAAAATCTTAAATAATTTATTATA
Found at i:8109186 original size:2 final size:2
Alignment explanation
Indices: 8109181--8109209 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8109171 TATCAAATAA
8109181 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8109210 ATTAAACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8114659 original size:22 final size:22
Alignment explanation
Indices: 8114634--8114677 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8114624 ATTTTTTGTC
8114634 CTTAATTCTAG-GAATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
8114656 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8114678 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:8117485 original size:3 final size:3
Alignment explanation
Indices: 8117477--8117512 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8117467 ATCCTTTTCC
8117477 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8117513 CTACTACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8124307 original size:11 final size:11
Alignment explanation
Indices: 8124293--8124327 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
8124283 AAAAAATTAA
8124293 AAAAAAGAAAG
1 AAAAAAGAAAG
8124304 AAAAAAGAAA-
1 AAAAAAGAAAG
8124314 AAAGAAAGAAAG
1 AAA-AAAGAAAG
8124326 AA
1 AA
8124328 GAGACAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 17 0.77
12 2 0.09
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:8124316 original size:18 final size:18
Alignment explanation
Indices: 8124293--8124329 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8124283 AAAAAATTAA
8124293 AAAAAAGAAAGAAAAAAG
1 AAAAAAGAAAGAAAAAAG
*
8124311 AAAAAAGAAAGAAAGAAG
1 AAAAAAGAAAGAAAAAAG
8124329 A
1 A
8124330 GACAAATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAGAAAAAAG
Found at i:8124321 original size:4 final size:4
Alignment explanation
Indices: 8124296--8124327 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8124286 AAATTAAAAA
8124296 AAAG AAAG AAA- AAAG AAA- AAAG AAAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
8124328 GAGACAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 6 0.23
4 20 0.77
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:8125833 original size:7 final size:7
Alignment explanation
Indices: 8125795--8125843 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
8125785 ATTTTTTTAA
8125795 AAATAA-
1 AAATAAT
8125801 AAATAA-
1 AAATAAT
* *
8125807 AGATATT
1 AAATAAT
*
8125814 AAAAAAT
1 AAATAAT
8125821 -AATAAT
1 AAATAAT
8125827 AAATAAT
1 AAATAAT
8125834 AAATAAT
1 AAATAAT
8125841 AAA
1 AAA
8125844 ATCTTCAAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
6 15 0.43
7 20 0.57
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:8125908 original size:58 final size:57
Alignment explanation
Indices: 8125846--8126037 Score: 172
Period size: 58 Copynumber: 3.3 Consensus size: 57
8125836 ATAATAAAAT
* *
8125846 CTTCAAACCCTAAAATTGAAATCTCAAACCTCAAACTGTAAAATCAAAACCCTAAAAC
1 CTTCAAACCCTAAAATTGAAATCTCAAACCTCAAACTCTAAAATAAAAACCCT-AAAC
* * ** * * ***
8125904 CTTCAAACCCTGAAATCGAAATCTCAAATTTTAAACCCTAAAATTGGAACCCTAAAC
1 CTTCAAACCCTAAAATTGAAATCTCAAACCTCAAACTCTAAAATAAAAACCCTAAAC
* * *
8125961 CTTTCACACCCTAAAAATGAAA-CCCTAAACCCTTCAAA-TCCTAAAATAAAAACCCTAAAC
1 C-TTCAAACCCTAAAATTGAAATCTC-AAA-CC-TCAAACT-CTAAAATAAAAACCCTAAAC
*
8126021 CCTCTAAACCCTAAAAT
1 CTTC-AAACCCTAAAAT
8126038 CAAAACCCTA
Statistics
Matches: 103, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
57 7 0.07
58 62 0.60
59 2 0.02
60 32 0.31
ACGTcount: A:0.45, C:0.29, G:0.04, T:0.22
Consensus pattern (57 bp):
CTTCAAACCCTAAAATTGAAATCTCAAACCTCAAACTCTAAAATAAAAACCCTAAAC
Found at i:8125920 original size:30 final size:29
Alignment explanation
Indices: 8125846--8126201 Score: 172
Period size: 30 Copynumber: 12.1 Consensus size: 29
8125836 ATAATAAAAT
** *
8125846 CTTCAAACCCTAAAATTGAAA-TCTCAAAC
1 CTTCAAACCCTAAAATCAAAACCCT-AAAC
**
8125875 C-TCAAACTGTAAAATCAAAACCCTAAAAC
1 CTTCAAACCCTAAAATCAAAACCCT-AAAC
* * *
8125904 CTTCAAACCCTGAAATCGAAA-TCTCAAA-
1 CTTCAAACCCTAAAATCAAAACCCT-AAAC
* * ***
8125932 TTTTAAACCCTAAAATTGGAACCCTAAAC
1 CTTCAAACCCTAAAATCAAAACCCTAAAC
* *
8125961 CTTTCACACCCTAAAAAT-GAAACCCTAAACC
1 C-TTCAAACCCT-AAAATCAAAACCCTAAA-C
* *
8125992 CTTCAAATCCTAAAATAAAAACCCTAAAC
1 CTTCAAACCCTAAAATCAAAACCCTAAAC
*
8126021 CCTCTAAACCCTAAAATCAAAACCCTAAAC
1 CTTC-AAACCCTAAAATCAAAACCCTAAAC
* * * *
8126051 CCTCAAAACCTTAAAAT-TAAGCCCTAAAC
1 CTTC-AAACCCTAAAATCAAAACCCTAAAC
* ** * * * *
8126080 TTTTTGAACCCTAAAAACGAAATCTTAAAC
1 -CTTCAAACCCTAAAATCAAAACCCTAAAC
* * * *
8126110 TCTTGAAACCTTAAAATCAAATCCTTAAAAC
1 -CTTCAAACCCTAAAATCAAAACCCT-AAAC
* * * * * *
8126141 ATCCAAACCTTAAAAACGAAACCTTAAACC
1 CTTCAAACCCTAAAATCAAAACCCTAAA-C
8126171 CTT--AACCCTAAAATCCAAAATCCC-AAAC
1 CTTCAAACCCTAAAAT-CAAAA-CCCTAAAC
8126199 CTT
1 CTT
8126202 AAAATTCGAA
Statistics
Matches: 250, Mismatches: 62, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
28 47 0.19
29 53 0.21
30 139 0.56
31 11 0.04
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (29 bp):
CTTCAAACCCTAAAATCAAAACCCTAAAC
Found at i:8126016 original size:60 final size:59
Alignment explanation
Indices: 8125951--8126173 Score: 191
Period size: 60 Copynumber: 3.7 Consensus size: 59
8125941 CTAAAATTGG
* *
8125951 AACCCTAAACCTTTCACACCCTAAAAATGAAACCCTAAACCCTTCAAATCC-TAAAATAAA
1 AACCCTAAACCTTTCAAACCCTAAAAACGAAACCCTAAACCCTTCAAA-CCTTAAAAT-AA
* * * *
8126011 AACCCTAAACC-CTCTAAACCCTAAAATCAAAACCCTAAACCC-TCAAAACCTTAAAATTA
1 AACCCTAAACCTTTC-AAACCCTAAAAACGAAACCCTAAACCCTTC-AAACCTTAAAATAA
* * ** * * * *
8126070 AGCCCTAAACTTTTTGAACCCTAAAAACGAAATCTTAAACTCTTGAAACCTTAAAATCAA
1 AACCCTAAACCTTTCAAACCCTAAAAACGAAACCCTAAACCCTTCAAACCTTAAAAT-AA
* * * * * * *
8126130 ATCCTTAAAACATCCAAACCTTAAAAACGAAACCTTAAACCCTT
1 AACCCTAAACCTTTCAAACCCTAAAAACGAAACCCTAAACCCTT
8126174 AACCCTAAAA
Statistics
Matches: 128, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
59 49 0.38
60 79 0.62
ACGTcount: A:0.46, C:0.30, G:0.03, T:0.22
Consensus pattern (59 bp):
AACCCTAAACCTTTCAAACCCTAAAAACGAAACCCTAAACCCTTCAAACCTTAAAATAA
Found at i:8126019 original size:14 final size:14
Alignment explanation
Indices: 8126000--8126049 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
8125990 CCCTTCAAAT
*
8126000 CCTAAAATAAAAAC
1 CCTAAAATCAAAAC
* *
8126014 CCTAAACCCTCTAAAC
1 CCTAAA--ATCAAAAC
8126030 CCTAAAATCAAAAC
1 CCTAAAATCAAAAC
8126044 CCTAAA
1 CCTAAA
8126050 CCCTCAAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 18 0.62
16 11 0.38
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (14 bp):
CCTAAAATCAAAAC
Found at i:8126031 original size:16 final size:16
Alignment explanation
Indices: 8125980--8126065 Score: 74
Period size: 16 Copynumber: 5.6 Consensus size: 16
8125970 CCTAAAAATG
8125980 AAACCCTAAACCCTTC-
1 AAACCCTAAACCC-TCA
* * *
8125996 AAATCCTAAA--ATAA
1 AAACCCTAAACCCTCA
*
8126010 AAACCCTAAACCCTCT
1 AAACCCTAAACCCTCA
*
8126026 AAACCCTAAA--ATCA
1 AAACCCTAAACCCTCA
8126040 AAACCCTAAACCCTCA
1 AAACCCTAAACCCTCA
*
8126056 AAACCTTAAA
1 AAACCCTAAA
8126066 ATTAAGCCCT
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
13 1 0.02
14 21 0.39
16 32 0.59
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (16 bp):
AAACCCTAAACCCTCA
Found at i:8126164 original size:14 final size:14
Alignment explanation
Indices: 8126086--8126168 Score: 60
Period size: 14 Copynumber: 5.6 Consensus size: 14
8126076 AAACTTTTTG
*
8126086 AACCCTAAAAACGA
1 AACCTTAAAAACGA
* **
8126100 AATCTTAAACTCTTGA
1 AACCTTAAAAAC--GA
*
8126116 AACCTTAAAATC-A
1 AACCTTAAAAACGA
*
8126129 AATCCTTAAAACATCCA
1 AA-CCTTAAAA-A-CGA
8126146 AACCTTAAAAACGA
1 AACCTTAAAAACGA
8126160 AACCTTAAA
1 AACCTTAAA
8126169 CCCTTAACCC
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
13 3 0.05
14 27 0.49
15 1 0.02
16 21 0.38
17 3 0.05
ACGTcount: A:0.51, C:0.24, G:0.04, T:0.22
Consensus pattern (14 bp):
AACCTTAAAAACGA
Found at i:8126213 original size:15 final size:15
Alignment explanation
Indices: 8126195--8126223 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8126185 CCAAAATCCC
8126195 AAACCTTAAAATTCG
1 AAACCTTAAAATTCG
8126210 AAACCTTAAAATTC
1 AAACCTTAAAATTC
8126224 AAAATCCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
AAACCTTAAAATTCG
Found at i:8126235 original size:15 final size:15
Alignment explanation
Indices: 8126195--8126227 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8126185 CCAAAATCCC
*
8126195 AAACCTTAAAATTCG
1 AAACCTTAAAATTCA
8126210 AAACCTTAAAATTCA
1 AAACCTTAAAATTCA
8126225 AAA
1 AAA
8126228 TCCTAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (15 bp):
AAACCTTAAAATTCA
Found at i:8128018 original size:58 final size:55
Alignment explanation
Indices: 8127927--8128037 Score: 177
Period size: 58 Copynumber: 2.0 Consensus size: 55
8127917 TATTTTGTCA
8127927 TATACTTATTTGTTTGTTTTACTTATTTATTTATTTGCTTGTTTTATGGACTTAC
1 TATACTTATTTGTTTGTTTTACTTATTTATTTATTTGCTTGTTTTATGGACTTAC
* *
8127982 TATACTTGTTTGTTTGTTGATTTACTTATTTATTTATTTGCTTGTTTTATTGACTT
1 TATACTTATTTGTTTG-T--TTTACTTATTTATTTATTTGCTTGTTTTATGGACTT
8128038 GTTTAATTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
55 15 0.29
56 1 0.02
58 35 0.69
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.63
Consensus pattern (55 bp):
TATACTTATTTGTTTGTTTTACTTATTTATTTATTTGCTTGTTTTATGGACTTAC
Found at i:8135964 original size:8 final size:8
Alignment explanation
Indices: 8135951--8135988 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
8135941 ATATTTTGCT
8135951 TAAAAAAA
1 TAAAAAAA
8135959 TAAAAAAA
1 TAAAAAAA
8135967 TAAAAAAA
1 TAAAAAAA
*
8135975 TAACAAAA
1 TAAAAAAA
8135983 -AAAAAA
1 TAAAAAA
8135989 GATGATTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 5 0.18
8 23 0.82
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.11
Consensus pattern (8 bp):
TAAAAAAA
Found at i:8137333 original size:109 final size:108
Alignment explanation
Indices: 8137091--8138659 Score: 992
Period size: 109 Copynumber: 14.5 Consensus size: 108
8137081 TGACTCACGA
* * * * * *
8137091 TTTAATCAC-AGTCGCTTTTATTTTTCTGACTTGA-GGTTCAGTCCCAGTCGTCGTTAATCTCTA
1 TTTAATC-CTAGTCACTTTTATTTTTTTGACTT-ACGATTCA-TTCCAGTCGTCGTTAATCTTTG
* * * ** * * **
8137154 ACTTGTGATTCAATCCC-ATTCATTTCCAT-TTTTC-TAACTTGCGG
63 ACTCGTGGTTTAATCCCGA-TCATTTTTATAGTTTCTTGACTTGTAG
** * * * * * *
8137198 TTTAATTTTAGTCACTTTTATTTTTTGGGCTTGCGATTCACTTCCAATCATCGTTAATCTCTGAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCA-TTCCAGTCGTCGTTAATCTTTGAC
* * * **
8137263 TTGTGGTTTAATCCCGATCGTTTTTATAGTTTCATGACTAATAG
65 TCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* *
8137307 TTTAATCCTAGTCGCTTTTA-TTTTTTGACTTAC-AGTTCAGTTCCAGTTGTCGTTAATCTTTGA
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGA-TTCA-TTCCAGTCGTCGTTAATCTTTGA
* * ** * * *
8137370 CTTGTGATTT-ATCCCGATCATTTCAATAGTTT-TCGACTTGCAA
64 CTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* * * *
8137413 TTTAAT-CTCAGTCGCTTTTATTTTTCTAACTTACTG-TTCAATCTCAGTCGTCGTTAATCTTTG
1 TTTAATCCT-AGTCACTTTTATTTTTTTGACTTAC-GATTCATTC-CAGTCGTCGTTAATCTTTG
* * * * * * * *
8137476 ACTCATGATTTAATCTCGGTTATTTTTATAGTTTTTTTACTCGTAG
63 ACTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
** * * * * *
8137522 TTTAAT-CTCAGTCGGTTTTATTTTTTTGACTTGCAATTCAGTCCTAGTCATTGTTAATCTTTGA
1 TTTAATCCT-AGTCACTTTTATTTTTTTGACTTACGATTCATTCC-AGTCGTCGTTAATCTTTGA
* * * * *
8137586 CTCGTGATTTAATCCCAATCATTTCTATAGTTT-TTGGACTTATGG
64 CTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTT-GACTTGTAG
* * * * *
8137631 TTTAATCCTAGTCATTTTTATTTTTTTGATTTACGATTTAGTCCCAGTCGTCATTAATCTTTGAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCA-TTCCAGTCGTCGTTAATCTTTGAC
** * * ***
8137696 TCGCAGTTTAAT-CCTAGTAATTTTTAT--TTTCTTGACTTACGG
65 TCGTGGTTTAATCCCGA-TCATTTTTATAGTTTCTTGACTTGTAG
* * * * *
8137738 TTTAATCCCAGTCACTTTTATTTTTCTAACTTACGATTCAGTCCCAGTCGTCATTAATCTTTGAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCA-TTCCAGTCGTCGTTAATCTTTGAC
* ** * ** **
8137803 TCATGGTTTAATCTTGATCATTTCTATAGTTTCTCAACTTGCGG
65 TCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* * * *
8137847 TTTAATCCCAATCACTTTTATTTTTTTGACTTACGGTTCAATCCTAGTCGTCGTTAATCTTTGAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCATTCC-AGTCGTCGTTAATCTTTGAC
* * * *
8137912 TTGTGGTTTAATCCTGATCATTTCTATAGTTT-TTCGACTTGCAG
65 TCGTGGTTTAATCCCGATCATTTTTATAGTTTCTT-GACTTGTAG
* * * * *
8137956 TTTAAT-CTCAGTCACTTTTATTTTTTGGAC-T-CGCAGTTCAGTCTCAATCGTCATTAATCTCT
1 TTTAATCCT-AGTCACTTTTATTTTTTTGACTTACG-A-TTCATTC-CAGTCGTCGTTAATCTTT
* * ** * ***
8138018 GACTTGTGGTTTAATCCCGGTCATTTTTATAGTTTCCAGACATACGG
62 GACTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* * ** * * * *
8138065 TTTAATCCCAATTGCTTTTATTTTTTTGACTTGCAATTCAATCCCAGTCGTCATTAATCTTTGAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTC-ATTCCAGTCGTCGTTAATCTTTGAC
* * *
8138130 TCGTGGTTTAATCTCGATCATTTTTATAGTTTTTTGACTTGTGG
65 TCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* * * * * * *
8138174 TTTAATCCCAATCACTTTTATTTTTTTGACTTGCGATTCAGTCTCAGTCATCGTTAATCCTTAAC
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCATTC-CAGTCGTCGTTAATCTTTGAC
** *
8138239 TCGTGGTTTAATCCC-AGTCATTTTTATAGTTTCTCAACTTG-CG
65 TCGTGGTTTAATCCCGA-TCATTTTTATAGTTTCTTGACTTGTAG
** * * * *
8138282 ATTTAAT-CTCAGTCGTTTTTATTTTTTTGACTTACAATTCAGTCTCAGTTGTCGTTAATTTTTG
1 -TTTAATCCT-AGTCACTTTTATTTTTTTGACTTACGATTCATTC-CAGTCGTCGTTAATCTTTG
* * * *
8138346 ACTCGCGGTTCAATCTCGATCATTTTTAT--TTTCTTAAC-T-TACG
63 ACTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTA-G
* * ** * * * * * * *
8138389 ATTTAATTCTAATTGCTTTTATTTCTTTGACTTGC-AGTTCAATCCCGGTCATTGTTAATTTTTG
1 -TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGA-TTC-ATTCCAGTCGTCGTTAATCTTTG
* * **
8138453 ACTCGTGGTTCAATCCC-AGTCATTTTTAT--TTTTTTGACTTACAG
63 ACTCGTGGTTTAATCCCGA-TCATTTTTATAGTTTCTTGACTTGTAG
* * * * * * * *
8138497 TTTAATCAC-AGTCGCTTTTATTTTTCTAACTTATGATTCAATCCCGGTTGTCATTAATCTTTGA
1 TTTAATC-CTAGTCACTTTTATTTTTTTGACTTACGATTC-ATTCCAGTCGTCGTTAATCTTTGA
*** * * * * ***
8138561 CTCACAGTTCAATCTCGATCGTTTTTAT--TTTCTTAACTTACGG
64 CTCGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
* * * * *
8138604 TTTAATCTTAGTCACTTTTATTTTTTTTACTTACGGTTCAATCTCAGTCATCGTTA
1 TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCATTC-CAGTCGTCGTTA
8138660 TTTTTTAACT
Statistics
Matches: 1169, Mismatches: 241, Indels: 104
0.77 0.16 0.07
Matches are distributed among these distances:
105 2 0.00
106 29 0.02
107 427 0.37
108 92 0.08
109 607 0.52
110 11 0.01
111 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (108 bp):
TTTAATCCTAGTCACTTTTATTTTTTTGACTTACGATTCATTCCAGTCGTCGTTAATCTTTGACT
CGTGGTTTAATCCCGATCATTTTTATAGTTTCTTGACTTGTAG
Found at i:8137708 original size:218 final size:217
Alignment explanation
Indices: 8137091--8138691 Score: 1264
Period size: 218 Copynumber: 7.4 Consensus size: 217
8137081 TGACTCACGA
* * * *
8137091 TTTAATCACAGTCGCTTTTATTTTTCTGACTTG-AGGTTCAGTCCCAGTCGTCGTTAATCTCTAA
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCA-GTTCAGTCCCAGTCGTCGTTAATCTTTGA
* * * * * * ** *
8137155 CTTGTGATTCAATCCCATTCATTTC--CA-TTTTTCTAACTTGCGGTTTAATTTTAGTCACTTTT
65 CTCGTGGTTTAATCCCAATCATTTCTATAGTTTTTC-GACTTGCGGTTTAATCCTAGTCGCTTTT
* * * * * * * * * * *
8137217 ATTTTTTGGGCTTGCGATTCACTTCCAATCATCGTTAATCTCTGACTTGTGGTTTAATCCCGATC
129 ATTTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGATC
* * *
8137282 GTTTTTATAGTTTCATGACTAATAG
194 ATTTTTATAGTTTCTTGACT-GTAG
* * *
8137307 TTTAATC-CTAGTCGCTTTTA-TTTTTTGACTTACAGTTCAGTTCCAGTTGTCGTTAATCTTTGA
1 TTTAATCTC-AGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTGA
* * * * **
8137370 CTTGTGATTT-ATCCCGATCATTTCAATAG-TTTTCGACTTGCAATTTAAT-CTCAGTCGCTTTT
65 CTCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATCCT-AGTCGCTTTT
* * * ** * *
8137432 ATTTTTCTAACTTACTG-TTCAATCTCAGTCGTCGTTAATCTTTGACTCATGATTTAATCTCGGT
129 ATTTTTTTGACTTAC-GATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGAT
* * *
8137496 TATTTTTATAGTTTTTTTACTCGTAG
193 CATTTTTATAGTTTCTTGACT-GTAG
* * * * *
8137522 TTTAATCTCAGTCGGTTTTATTTTTTTGACTTGCAATTCAGTCCTAGTCATTGTTAATCTTTGAC
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTGAC
* * ** **
8137587 TCGTGATTTAATCCCAATCATTTCTATAGTTTTTGGACTTATGGTTTAATCCTAGTCATTTTTAT
66 TCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATCCTAGTCGCTTTTAT
* * * * * * *
8137652 TTTTTTGATTTACGATTTAGTCCCAGTCGTCATTAATCTTTGACTCGCAGTTTAATC-CTAGTAA
131 TTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGA-TCA
8137716 TTTTTAT--TTTCTTGACT-TACGG
195 TTTTTATAGTTTCTTGACTGTA--G
* * * * * *
8137738 TTTAATCCCAGTCACTTTTATTTTTCTAACTTAC-GATTCAGTCCCAGTCGTCATTAATCTTTGA
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAG-TTCAGTCCCAGTCGTCGTTAATCTTTGA
* *** * * * * *
8137802 CTCATGGTTTAATCTTGATCATTTCTATAGTTTCTCAACTTGCGGTTTAATCCCAATCACTTTTA
65 CTCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATCCTAGTCGCTTTTA
* * * *
8137867 TTTTTTTGACTTACGGTTCAATCCTAGTCGTCGTTAATCTTTGACTTGTGGTTTAATC-CTGATC
130 TTTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTC-GATC
* *
8137931 ATTTCTATAGTTT-TTCGACTTGCAG
194 ATTTTTATAGTTTCTT-GAC-TGTAG
* * * * * * *
8137956 TTTAATCTCAGTCACTTTTATTTTTTGGACTCGCAGTTCAGTCTCAATCGTCATTAATCTCTGAC
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTGAC
* ** * * * * * * *
8138021 TTGTGGTTTAATCCCGGTCATTTTTATAG-TTTCCAGACATACGGTTTAATCCCAATTGCTTTTA
66 TCGTGGTTTAATCCCAATCATTTCTATAGTTTTTC-GACTTGCGGTTTAATCCTAGTCGCTTTTA
* * * *
8138085 TTTTTTTGACTTGCAATTCAATCCCAGTCGTCATTAATCTTTGACTCGTGGTTTAATCTCGATCA
130 TTTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGATCA
* *
8138150 TTTTTATAGTTTTTTGACTTGTGG
195 TTTTTATAGTTTCTTGAC-TGTAG
* * * * * * *
8138174 TTTAATCCCAATCACTTTTATTTTTTTGACTTGC-GATTCAGTCTCAGTCATCGTTAATCCTTAA
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAG-TTCAGTCCCAGTCGTCGTTAATCTTTGA
* * * * * *
8138238 CTCGTGGTTTAATCCCAGTCATTTTTATAGTTTCTCAACTTGCGATTTAAT-CTCAGTCGTTTTT
65 CTCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATCCT-AGTCGCTTTT
* * * * * *
8138302 ATTTTTTTGACTTACAATTCAGTCTCAGTTGTCGTTAATTTTTGACTCGCGGTTCAATCTCGATC
129 ATTTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGATC
*
8138367 ATTTTTAT--TTTCTTAACT-TACG
194 ATTTTTATAGTTTCTTGACTGTA-G
* * * * * * * *
8138389 ATTTAAT-TCTAATTGCTTTTATTTCTTTGACTTGCAGTTCAATCCCGGTCATTGTTAATTTTTG
1 -TTTAATCTC-AGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTG
* * * * * *
8138453 ACTCGTGGTTCAATCCCAGTCATTT-T-TATTTTTTTGACTTACAGTTTAATCAC-AGTCGCTTT
64 ACTCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATC-CTAGTCGCTTT
* * * * * * * * *
8138515 TATTTTTCTAACTTATGATTCAATCCCGGTTGTCATTAATCTTTGACTCACAGTTCAATCTCGAT
128 TATTTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGAT
* *
8138580 CGTTTTTAT--TTTCTTAACT-TACGG
193 CATTTTTATAGTTTCTTGACTGTA--G
* * * * * * * * * * *
8138604 TTTAATCTTAGTCACTTTTATTTTTTTTACTTACGGTTCAATCTCAGTCATCGTTATTTTTTAAC
1 TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTGAC
****
8138669 TCACATTTTAATCCCAATCATTT
66 TCGTGGTTTAATCCCAATCATTT
8138692 TATTTTTATC
Statistics
Matches: 1122, Mismatches: 225, Indels: 78
0.79 0.16 0.05
Matches are distributed among these distances:
214 182 0.16
215 154 0.14
216 323 0.29
217 28 0.02
218 424 0.38
219 10 0.01
220 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (217 bp):
TTTAATCTCAGTCGCTTTTATTTTTTTGACTTGCAGTTCAGTCCCAGTCGTCGTTAATCTTTGAC
TCGTGGTTTAATCCCAATCATTTCTATAGTTTTTCGACTTGCGGTTTAATCCTAGTCGCTTTTAT
TTTTTTGACTTACGATTCAATCCCAGTCGTCGTTAATCTTTGACTCGCGGTTTAATCTCGATCAT
TTTTATAGTTTCTTGACTGTAG
Found at i:8137741 original size:36 final size:35
Alignment explanation
Indices: 8137593--8138698 Score: 235
Period size: 36 Copynumber: 30.7 Consensus size: 35
8137583 TGACTCGTGA
* * *
8137593 TTTAATCCCAATCATTTCTATAGTTTTTGGACTTATGG
1 TTTAATCCCAGTCATTT-T-TA-TTTTTTGACTTACGG
* * *
8137631 TTTAATCCTAGTCATTTTTATTTTTTTGATTTACGA
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * ** * * ** *
8137667 TTTAGTCCCAGTCGTCATTAATCTTTGACTCGCAG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* *
8137702 TTTAATCCTAGTAATTTTTATTTTCTTGACTTACGG
1 TTTAATCCCAGTCATTTTTATTTT-TTGACTTACGG
* * *
8137738 TTTAATCCCAGTCACTTTTATTTTTCTAACTTACGA
1 TTTAATCCCAGTCATTTTTATTTTT-TGACTTACGG
* * * ** * * * *
8137774 TTCAGTCCCAGTCGTCATTAATCTTTGACTCATGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
** * ** *
8137809 TTTAAT-CTTGATCATTTCTATAGTTTCTCAACTTGCGG
1 TTTAATCCCAG-TCATTT-T-TA-TTTTTTGACTTACGG
* *
8137847 TTTAATCCCAATCACTTTTATTTTTTTGACTTACGG
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * * ** * * **
8137883 TTCAATCCTAGTCGTCGTTAATCTTTGACTTGTGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* * * *
8137918 TTTAAT-CCTGATCATTTCTATAGTTTTTCGACTTGCAG
1 TTTAATCCCAG-TCATTT-T-TA-TTTTTTGACTTACGG
* * ** *
8137956 TTTAATCTCAGTCACTTTTATTTTTTGGACTCGCAG
1 TTTAATCCCAGTCATTTTTATTTTTT-GACTTACGG
* * * * * ** * * * **
8137992 TTCAGTCTCAATCGTCATTAATCTCTGACTTGTGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* ** *
8138027 TTTAATCCCGGTCATTTTTATAGTTTCCAGACATACGG
1 TTTAATCCCAGTCATTTTTAT--TTT-TTGACTTACGG
* *** * **
8138065 TTTAATCCCAATTGCTTTTATTTTTTTGACTTGCAA
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * ** * * ***
8138101 TTCAATCCCAGTCGTCATTAATCTTTGACTCGTGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* **
8138136 TTTAATCTC-GATCATTTTTATAGTTTTTTGACTTGTGG
1 TTTAATCCCAG-TCA-TTTT-TA-TTTTTTGACTTACGG
* * * *
8138174 TTTAATCCCAATCACTTTTATTTTTTTGACTTGCGA
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * * ** * ** * ***
8138210 TTCAGTCTCAGTCATCGTTAATCCTTAACTCGTGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
** * *
8138245 TTTAATCCCAGTCATTTTTATAGTTTCTCAACTTGCGA
1 TTTAATCCCAGTCATTTTTAT--TTT-TTGACTTACGG
* * **
8138283 TTTAATCTCAGTCGTTTTTATTTTTTTGACTTACAA
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * * ** ** * **
8138319 TTCAGTCTCAGTTGTCGTTAATTTTTGACTCGCGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* * * *
8138354 TTCAATCTC-GATCATTTTTATTTTCTTAACTTACGA
1 TTTAATCCCAG-TCATTTTTATTTT-TTGACTTACGG
* * * *** * *
8138390 TTTAATTCTAATTGCTTTTATTTCTTTGACTTGCAG
1 TTTAATCCCAGTCATTTTTATTT-TTTGACTTACGG
* * * * ***
8138426 TTCAATCCCGGTCATTGTTAATTTTTGACTCGTGG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* *
8138461 TTCAATCCCAGTCATTTTTATTTTTTTGACTTACAG
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* ** * * *
8138497 TTTAATCACAGTCGCTTTTATTTTTCTAACTTATGA
1 TTTAATCCCAGTCATTTTTATTTTT-TGACTTACGG
* * ** ** * * * *
8138533 TTCAATCCCGGTTGTCATTAATCTTTGACTCACAG
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
* * * *
8138568 TTCAATCTC-GATCGTTTTTATTTTCTTAACTTACGG
1 TTTAATCCCAG-TCATTTTTATTTT-TTGACTTACGG
** * *
8138604 TTTAATCTTAGTCACTTTTATTTTTTTTACTTACGG
1 TTTAATCCCAGTCATTTTTA-TTTTTTGACTTACGG
* * ** * * **
8138640 TTCAATCTCAGTCATCGTTATTTTTTAACTCACAT
1 TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
*
8138675 TTTAATCCCAATCA-TTTTATTTTT
1 TTTAATCCCAGTCATTTTTATTTTT
8138699 ATCATTATAT
Statistics
Matches: 736, Mismatches: 296, Indels: 76
0.66 0.27 0.07
Matches are distributed among these distances:
34 15 0.02
35 222 0.30
36 343 0.47
37 27 0.04
38 124 0.17
39 5 0.01
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.47
Consensus pattern (35 bp):
TTTAATCCCAGTCATTTTTATTTTTTGACTTACGG
Found at i:8137952 original size:38 final size:38
Alignment explanation
Indices: 8137807--8137962 Score: 112
Period size: 38 Copynumber: 4.2 Consensus size: 38
8137797 TTTGACTCAT
* * *
8137807 GGTTTAATCTTGATCATTTCTATAGTTTCTCAACTTGC
1 GGTTTAATCCTGATCATTTCTATAGTTTTTCGACTTGC
** * *
8137845 GGTTTAATCCCAATCACTTT-TAT--TTTTTTGACTTAC
1 GGTTTAATCCTGATCA-TTTCTATAGTTTTTCGACTTGC
* * * * *
8137881 GGTTCAATCCT-AGTC--GTCGT-TAATCTTT-GACTTGT
1 GGTTTAATCCTGA-TCATTTC-TATAGTTTTTCGACTTGC
8137916 GGTTTAATCCTGATCATTTCTATAGTTTTTCGACTTGC
1 GGTTTAATCCTGATCATTTCTATAGTTTTTCGACTTGC
*
8137954 AGTTTAATC
1 GGTTTAATC
8137963 TCAGTCACTT
Statistics
Matches: 88, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 19 0.22
36 26 0.30
37 8 0.09
38 30 0.34
39 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (38 bp):
GGTTTAATCCTGATCATTTCTATAGTTTTTCGACTTGC
Found at i:8138175 original size:38 final size:36
Alignment explanation
Indices: 8138124--8138206 Score: 112
Period size: 38 Copynumber: 2.2 Consensus size: 36
8138114 GTCATTAATC
* * * *
8138124 TTTGACTCGTGGTTTAATCTCGATCATTTTTATAGTTT
1 TTTGACTTGTGGTTTAATCCCAATCACTTTTAT--TTT
8138162 TTTGACTTGTGGTTTAATCCCAATCACTTTTATTTT
1 TTTGACTTGTGGTTTAATCCCAATCACTTTTATTTT
8138198 TTTGACTTG
1 TTTGACTTG
8138207 CGATTCAGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 12 0.29
38 29 0.71
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.53
Consensus pattern (36 bp):
TTTGACTTGTGGTTTAATCCCAATCACTTTTATTTT
Found at i:8139122 original size:20 final size:20
Alignment explanation
Indices: 8139097--8139144 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
8139087 ACTGGTCGCC
8139097 CATGCCACTGCCCTAGCCAT
1 CATGCCACTGCCCTAGCCAT
*
8139117 CATGCCACTGTCCTAGCCAT
1 CATGCCACTGCCCTAGCCAT
8139137 CATGCCAC
1 CATGCCAC
8139145 CCCTTTATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.44, G:0.15, T:0.21
Consensus pattern (20 bp):
CATGCCACTGCCCTAGCCAT
Found at i:8139522 original size:28 final size:28
Alignment explanation
Indices: 8139439--8139510 Score: 135
Period size: 28 Copynumber: 2.6 Consensus size: 28
8139429 TTTTTCAGGC
8139439 CTAAGCCTGATTTTGATTCGACTGGGCT
1 CTAAGCCTGATTTTGATTCGACTGGGCT
*
8139467 CTGAGCCTGATTTTGATTCGACTGGGCT
1 CTAAGCCTGATTTTGATTCGACTGGGCT
8139495 CTAAGCCTGATTTTGA
1 CTAAGCCTGATTTTGA
8139511 CTCAATTGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (28 bp):
CTAAGCCTGATTTTGATTCGACTGGGCT
Found at i:8139719 original size:23 final size:23
Alignment explanation
Indices: 8139693--8139739 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8139683 TAGCACCATT
* * *
8139693 CCCAGTCCCATTAGACCAGCCAC
1 CCCAATCCCATCAAACCAGCCAC
8139716 CCCAATCCCATCAAACCAGCCAC
1 CCCAATCCCATCAAACCAGCCAC
8139739 C
1 C
8139740 AAACAGTCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.51, G:0.09, T:0.11
Consensus pattern (23 bp):
CCCAATCCCATCAAACCAGCCAC
Found at i:8140653 original size:21 final size:22
Alignment explanation
Indices: 8140615--8140667 Score: 90
Period size: 21 Copynumber: 2.4 Consensus size: 22
8140605 CCCGAAATTA
8140615 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
8140637 ATAAAATATTA-TTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
8140658 ATAAATATAT
1 ATAAA-ATAT
8140668 AATTATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 15 0.50
22 15 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:8141967 original size:13 final size:13
Alignment explanation
Indices: 8141949--8141974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8141939 GGTAAAAAAA
8141949 ATTATTTATTTAT
1 ATTATTTATTTAT
8141962 ATTATTTATTTAT
1 ATTATTTATTTAT
8141975 TTTAAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTATTTATTTAT
Found at i:8142482 original size:18 final size:18
Alignment explanation
Indices: 8142442--8142482 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8142432 TTTTTTTTAA
8142442 AAAATAAAAATAAAGAAT
1 AAAATAAAAATAAAGAAT
* * *
8142460 TAAATAATAATAAATAAT
1 AAAATAAAAATAAAGAAT
8142478 AAAAT
1 AAAAT
8142483 CTTCAAACCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (18 bp):
AAAATAAAAATAAAGAAT
Found at i:8142538 original size:14 final size:14
Alignment explanation
Indices: 8142521--8142597 Score: 59
Period size: 14 Copynumber: 5.4 Consensus size: 14
8142511 TCTCAAATCG
8142521 TAAAATTGAAACCC
1 TAAAATTGAAACCC
* *
8142535 TAAAACCTTCAAACCT
1 TAAAA--TTGAAACCC
* *
8142551 TGAAATCGAAATCCC
1 TAAAATTGAAA-CCC
8142566 -AAAACTT-AAACCC
1 TAAAA-TTGAAACCC
*
8142579 CAAAATTGAAACCC
1 TAAAATTGAAACCC
8142593 TAAAA
1 TAAAA
8142598 AACTTCCAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
13 5 0.10
14 29 0.60
15 3 0.06
16 11 0.23
ACGTcount: A:0.49, C:0.26, G:0.05, T:0.19
Consensus pattern (14 bp):
TAAAATTGAAACCC
Found at i:8142548 original size:58 final size:58
Alignment explanation
Indices: 8142477--8142615 Score: 179
Period size: 58 Copynumber: 2.4 Consensus size: 58
8142467 TAATAAATAA
* * * **
8142477 TAAAATCTTCAAACCCTAAAATCGAAATCCCAAATCTCAAATCGTAAAATTGAAACCC
1 TAAAAACTTCAAACCCTAAAATCGAAATCCCAAAACTCAAACCCCAAAATTGAAACCC
* * * *
8142535 TAAAACCTTCAAACCTTGAAATCGAAATCCCAAAACTTAAACCCCAAAATTGAAACCC
1 TAAAAACTTCAAACCCTAAAATCGAAATCCCAAAACTCAAACCCCAAAATTGAAACCC
8142593 TAAAAAACTTCCAAACCCTAAAA
1 T-AAAAACTT-CAAACCCTAAAA
8142616 AAGAAACCCT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
58 51 0.75
59 7 0.10
60 10 0.15
ACGTcount: A:0.48, C:0.27, G:0.04, T:0.20
Consensus pattern (58 bp):
TAAAAACTTCAAACCCTAAAATCGAAATCCCAAAACTCAAACCCCAAAATTGAAACCC
Found at i:8142642 original size:30 final size:30
Alignment explanation
Indices: 8142606--8142711 Score: 115
Period size: 30 Copynumber: 3.5 Consensus size: 30
8142596 AAAACTTCCA
8142606 AACCCTAAAAAAGAAACCCTAAACCTTTTG
1 AACCCTAAAAAAGAAACCCTAAACCTTTTG
* * ***
8142636 AACCCTAAAAACAAAAACCCTAAACCCTCCA
1 AACCCTAAAAA-AGAAACCCTAAACCTTTTG
** *
8142667 AACCCT-AAAATTAAACCCTAAACTTTTTG
1 AACCCTAAAAAAGAAACCCTAAACCTTTTG
*
8142696 AACCCTAAAAACGAAA
1 AACCCTAAAAAAGAAA
8142712 TCTTAACCCT
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
29 18 0.30
30 22 0.37
31 20 0.33
ACGTcount: A:0.49, C:0.29, G:0.04, T:0.18
Consensus pattern (30 bp):
AACCCTAAAAAAGAAACCCTAAACCTTTTG
Found at i:8142657 original size:31 final size:30
Alignment explanation
Indices: 8142606--8142706 Score: 114
Period size: 31 Copynumber: 3.4 Consensus size: 30
8142596 AAAACTTCCA
*
8142606 AACCCTAAAAAAGAAACCCTAAACCTTTTG
1 AACCCTAAAAAAAAAACCCTAAACCTTTTG
* ***
8142636 AACCCTAAAAACAAAAACCCTAAACCCTCCA
1 AACCCTAAAAA-AAAAACCCTAAACCTTTTG
** *
8142667 AACCCT-AAAATTAAACCCTAAACTTTTTG
1 AACCCTAAAAAAAAAACCCTAAACCTTTTG
8142696 AACCCTAAAAA
1 AACCCTAAAAA
8142707 CGAAATCTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
29 18 0.32
30 19 0.33
31 20 0.35
ACGTcount: A:0.49, C:0.30, G:0.03, T:0.19
Consensus pattern (30 bp):
AACCCTAAAAAAAAAACCCTAAACCTTTTG
Found at i:8142748 original size:60 final size:60
Alignment explanation
Indices: 8142602--8142794 Score: 180
Period size: 60 Copynumber: 3.2 Consensus size: 60
8142592 CTAAAAAACT
**
8142602 TCCAAACCCTAAAAAAGAAACCCTAAACCTTTTGAACCCTAAAAACAAAAACCCTAAACCC
1 TCCAAACCCT-AAAATTAAACCCTAAACCTTTTGAACCCTAAAAACAAAAACCCTAAACCC
* * * *
8142663 TCCAAACCCTAAAATTAAACCCTAAACTTTTTGAACCCTAAAAAC-GAAA-TCTTAACCC
1 TCCAAACCCTAAAATTAAACCCTAAACCTTTTGAACCCTAAAAACAAAAACCCTAAACCC
* * * * * *** *
8142721 TTCAAACCTTAAAATCTAAATCTCTAAAACATCCAAACCCTAAAAAC-AAAACCTTAAA-CC
1 TCCAAACCCTAAAAT-TAAA-CCCTAAACCTTTTGAACCCTAAAAACAAAAACCCTAAACCC
*
8142781 -CCTAACCCTAAAAT
1 TCCAAACCCTAAAAT
8142795 CCAAAATCCC
Statistics
Matches: 107, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
58 20 0.19
59 18 0.17
60 56 0.52
61 13 0.12
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (60 bp):
TCCAAACCCTAAAATTAAACCCTAAACCTTTTGAACCCTAAAAACAAAAACCCTAAACCC
Found at i:8142793 original size:22 final size:22
Alignment explanation
Indices: 8142776--8142824 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
8142766 ACAAAACCTT
*
8142776 AAACCCCTAACCCTAAAATCCA
1 AAACCCCAAACCCTAAAATCCA
* *
8142798 AAATCCCAAACCCTAAAATCCG
1 AAACCCCAAACCCTAAAATCCA
8142820 AAACC
1 AAACC
8142825 TTAAAATCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.39, G:0.02, T:0.12
Consensus pattern (22 bp):
AAACCCCAAACCCTAAAATCCA
Found at i:8142817 original size:15 final size:15
Alignment explanation
Indices: 8142797--8142833 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
8142787 CCTAAAATCC
8142797 AAAATCCCAAACCCT
1 AAAATCCCAAACCCT
* *
8142812 AAAATCCGAAACCTT
1 AAAATCCCAAACCCT
8142827 AAAATCC
1 AAAATCC
8142834 AAAATTCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.32, G:0.03, T:0.16
Consensus pattern (15 bp):
AAAATCCCAAACCCT
Found at i:8148396 original size:2 final size:2
Alignment explanation
Indices: 8148391--8148415 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8148381 AAAAAAAAAA
8148391 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8148416 GGAGCCCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8154338 original size:2 final size:2
Alignment explanation
Indices: 8154331--8154365 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8154321 TTGGCAGTTT
8154331 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8154366 AAATTATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8156489 original size:26 final size:26
Alignment explanation
Indices: 8156452--8156508 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8156442 TTTTTCAGAA
8156452 TTTTTTCATAAAT-T-TAAAAGTTATT
1 TTTTTTCATAAATATCTAAAA-TTATT
*
8156477 TATTTTTCTTAAATATCTAAAATTATT
1 T-TTTTTCATAAATATCTAAAATTATT
8156504 TTTTT
1 TTTTT
8156509 AAACACTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 1 0.04
26 15 0.54
27 7 0.25
28 5 0.18
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTTTCATAAATATCTAAAATTATT
Found at i:8162863 original size:21 final size:22
Alignment explanation
Indices: 8162826--8162868 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8162816 ATTTGATTCG
8162826 ATTTGATATTATAT-AAATTAA
1 ATTTGATATTATATAAAATTAA
*
8162847 ATTTGAT-TTGATTTAAAATTAA
1 ATTTGATATT-ATATAAAATTAA
8162869 TAAAATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 10 0.53
22 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
ATTTGATATTATATAAAATTAA
Found at i:8162945 original size:14 final size:13
Alignment explanation
Indices: 8162917--8162943 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8162907 AATTATATAA
8162917 TAAAAAATTATTT
1 TAAAAAATTATTT
8162930 TAAAAAATTATTT
1 TAAAAAATTATTT
8162943 T
1 T
8162944 TATATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAAAAATTATTT
Found at i:8165908 original size:24 final size:24
Alignment explanation
Indices: 8165864--8165910 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8165854 ATCTTGTTAC
* *
8165864 TTTGATGTTTTTTTTCGTATCATT
1 TTTGATGTTTTTTATCATATCATT
8165888 TTTG-TGTTTTGTTATCATATCAT
1 TTTGATGTTTT-TTATCATATCAT
8165911 GTTCAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.15, C:0.09, G:0.13, T:0.64
Consensus pattern (24 bp):
TTTGATGTTTTTTATCATATCATT
Found at i:8172763 original size:16 final size:17
Alignment explanation
Indices: 8172742--8172775 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8172732 GGAAATAAGC
8172742 TATTTTA-AATTAAATT
1 TATTTTACAATTAAATT
*
8172758 TATTTTACCATTAAATT
1 TATTTTACAATTAAATT
8172775 T
1 T
8172776 TAAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTTTACAATTAAATT
Found at i:8172943 original size:32 final size:32
Alignment explanation
Indices: 8172901--8172973 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
8172891 TTTTATATAT
*
8172901 TTATATAATGTTCTATGGTTTGAAATCAAACA
1 TTATTTAATGTTCTATGGTTTGAAATCAAACA
* *
8172933 TTATTTAATGTTCTATGGTTTGGAATCAAATA
1 TTATTTAATGTTCTATGGTTTGAAATCAAACA
8172965 TTATTTAAT
1 TTATTTAAT
8172974 TTTGTATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (32 bp):
TTATTTAATGTTCTATGGTTTGAAATCAAACA
Found at i:8174420 original size:28 final size:28
Alignment explanation
Indices: 8174380--8174437 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
8174370 TTTCAAAAAA
8174380 ATAACTTATTATATGATTACAATGAAGC
1 ATAACTTATTATATGATTACAATGAAGC
8174408 ATAACTTATTATATGATTACAATGAAGC
1 ATAACTTATTATATGATTACAATGAAGC
8174436 AT
1 AT
8174438 GAATTTAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (28 bp):
ATAACTTATTATATGATTACAATGAAGC
Found at i:8175577 original size:266 final size:269
Alignment explanation
Indices: 8175103--8175630 Score: 728
Period size: 266 Copynumber: 2.0 Consensus size: 269
8175093 TATACAAATG
* * * *
8175103 TAATTTAAGATTTGAATATTTACAATTAGAAAAGCAGGTGACAAAATTATTCTATGTTTATGTCA
1 TAATTTAAGAGTTAAATATTTACAATTAGAAAAGAAGGTGACAAAATTATTCTATGATTATGTCA
* * * * * *
8175168 ATTAAAGTTTTATTACCTTTAATATGAATTTAATTTAGAGTGATTTAAGATAAATAATAAAATAT
66 ATTAAAGTTTTATTACCTTTAATATAAATTTAATTAAAAGTAATTTAAGATAAATAATAAAACAG
* *** * *
8175233 AAATGTAATTAATTTATTAGAAAATATTAGATAATTTTTTAAAATTGTTCACATGTCAATTATAT
131 AAATGTAATTAATTTATTAGAAAATATTAGACAAAAATTTAAAATTATCCACATGTCAATTATAT
* * *
8175298 AGGTTGTTCACGTTGGAC-AT-T-TTTTTTGTCAAAGGTTTTGGA-TTTTATATATTTATATAAG
196 AGGCTATTCACGTTGGACAATATATTTTTTGTCAAAGGTCTT-GATTTTTATATATTTATATAAG
8175359 ATATAAGATA
260 ATATAAGATA
* * *
8175369 TAATTTAAGAGTTAAATATTTACAATT-GAAAAATAAGGTGATAAAATTATTCTTTGATTATGGT
1 TAATTTAAGAGTTAAATATTTACAATTAG-AAAAGAAGGTGACAAAATTATTCTATGATTAT-GT
*
8175433 -AATTAATGTTTTATTACCTTTAATATAAATTTAATTAAAAGTAATTTAAGATAAATAATAAAAC
64 CAATTAAAGTTTTATTACCTTTAATATAAATTTAATTAAAAGTAATTTAAGATAAATAATAAAAC
* *
8175497 AGAAATGTAATTAATTTATTAGAAGATATATA-ACAAAAATTTAAAATTATCCACATGTTAATTA
129 AGAAATGTAATTAATTTATTAGAAAATAT-TAGACAAAAATTTAAAATTATCCACATGTCAATTA
*
8175561 TATAGGCTATTCACGTTGGACAATATCATTTTTTGTTAAAGGTCTTGATTTTTATATATTTATAT
193 TATAGGCTATTCACGTTGGACAATAT-ATTTTTTGTCAAAGGTCTTGATTTTTATATATTTATAT
8175626 AAGAT
257 AAGAT
8175631 GCCAAATCTG
Statistics
Matches: 228, Mismatches: 26, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
265 1 0.00
266 181 0.79
267 6 0.03
268 1 0.00
269 2 0.01
270 37 0.16
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.42
Consensus pattern (269 bp):
TAATTTAAGAGTTAAATATTTACAATTAGAAAAGAAGGTGACAAAATTATTCTATGATTATGTCA
ATTAAAGTTTTATTACCTTTAATATAAATTTAATTAAAAGTAATTTAAGATAAATAATAAAACAG
AAATGTAATTAATTTATTAGAAAATATTAGACAAAAATTTAAAATTATCCACATGTCAATTATAT
AGGCTATTCACGTTGGACAATATATTTTTTGTCAAAGGTCTTGATTTTTATATATTTATATAAGA
TATAAGATA
Found at i:8176183 original size:18 final size:18
Alignment explanation
Indices: 8176153--8176202 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
8176143 AAATCCCTAG
*
8176153 AATCAATGAATTACAATC
1 AATCAAGGAATTACAATC
*
8176171 AATTAAGGAATTACAATC
1 AATCAAGGAATTACAATC
8176189 AATCAAGG-ATTACA
1 AATCAAGGAATTACA
8176203 TAGATTACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 6 0.21
18 23 0.79
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (18 bp):
AATCAAGGAATTACAATC
Found at i:8181980 original size:32 final size:34
Alignment explanation
Indices: 8181921--8181990 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 34
8181911 TATATAGAAA
* * *
8181921 TTAAATTATATCATTAAATAGACTTATAAAATAT
1 TTAAATTATATCAGTAAATAAAATTATAAAATAT
**
8181955 TTAAATTAT-T-AGTAAATAAAATTATAATTTAT
1 TTAAATTATATCAGTAAATAAAATTATAAAATAT
8181987 TTAA
1 TTAA
8181991 TTTTGATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 21 0.68
33 1 0.03
34 9 0.29
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (34 bp):
TTAAATTATATCAGTAAATAAAATTATAAAATAT
Found at i:8187386 original size:10 final size:10
Alignment explanation
Indices: 8187371--8187412 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
8187361 TGTATTAACC
8187371 AAAGAACAAA
1 AAAGAACAAA
*
8187381 AAAGAAAAAA
1 AAAGAACAAA
*
8187391 AAAGAACACA
1 AAAGAACAAA
*
8187401 AATGAA-AAA
1 AAAGAACAAA
8187410 AAA
1 AAA
8187413 TAGTAGAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
9 4 0.15
10 22 0.85
ACGTcount: A:0.81, C:0.07, G:0.10, T:0.02
Consensus pattern (10 bp):
AAAGAACAAA
Found at i:8187396 original size:20 final size:20
Alignment explanation
Indices: 8187371--8187412 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8187361 TGTATTAACC
8187371 AAAGAACAAAAAAGAAAAAA
1 AAAGAACAAAAAAGAAAAAA
* *
8187391 AAAGAACACAAATGAAAAAA
1 AAAGAACAAAAAAGAAAAAA
8187411 AA
1 AA
8187413 TAGTAGAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.07, G:0.10, T:0.02
Consensus pattern (20 bp):
AAAGAACAAAAAAGAAAAAA
Done.