Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 35 of 138
Found at i:8190632 original size:34 final size:34
Alignment explanation
Indices: 8190593--8190666 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
8190583 ATTATATATT
8190593 TTGCTCTACGTTGATTTTGAACTTGGGTATATAC
1 TTGCTCTACGTTGATTTTGAACTTGGGTATATAC
* * *
8190627 TTGCTCTACGTTGATTTTGAATTTGTGTATATTC
1 TTGCTCTACGTTGATTTTGAACTTGGGTATATAC
8190661 TTGCTC
1 TTGCTC
8190667 AAGTGTTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.49
Consensus pattern (34 bp):
TTGCTCTACGTTGATTTTGAACTTGGGTATATAC
Found at i:8196596 original size:35 final size:36
Alignment explanation
Indices: 8196527--8196600 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
8196517 CCAAAAGTAG
*
8196527 AAATTTGAGATAGCAAATCATTTTGAAAGAAAAAGA
1 AAATTTGAGATAGCAAATCATGTTGAAAGAAAAAGA
* *
8196563 AAATTTGAGATAGTAAATCATGTTGAAA-TAAAAGA
1 AAATTTGAGATAGCAAATCATGTTGAAAGAAAAAGA
8196598 AAA
1 AAA
8196601 GGAAATGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
35 9 0.26
36 26 0.74
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.26
Consensus pattern (36 bp):
AAATTTGAGATAGCAAATCATGTTGAAAGAAAAAGA
Found at i:8197806 original size:2 final size:2
Alignment explanation
Indices: 8197799--8197823 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8197789 GTGCCACAGT
8197799 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
8197824 ATGCATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8200589 original size:17 final size:17
Alignment explanation
Indices: 8200557--8200597 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
8200547 ATAAAGGCAA
*
8200557 GAAAATGCCTTATTAAAT
1 GAAAA-GCCCTATTAAAT
8200575 GAAAAGCCCTATTAAAT
1 GAAAAGCCCTATTAAAT
8200592 GAAAAG
1 GAAAAG
8200598 ATAAATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.24
Consensus pattern (17 bp):
GAAAAGCCCTATTAAAT
Found at i:8204395 original size:34 final size:34
Alignment explanation
Indices: 8204349--8204417 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
8204339 TCATAAGATG
8204349 AACTCTGCAATCAATAGTATCCCAAATATTTAGA
1 AACTCTGCAATCAATAGTATCCCAAATATTTAGA
*
8204383 AACTCTGTAATCAATAGTATCCCAAATATTTAGA
1 AACTCTGCAATCAATAGTATCCCAAATATTTAGA
8204417 A
1 A
8204418 CTTCACAACC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (34 bp):
AACTCTGCAATCAATAGTATCCCAAATATTTAGA
Found at i:8210660 original size:23 final size:23
Alignment explanation
Indices: 8210633--8210677 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8210623 TTTAACAAGT
*
8210633 TGTTTAGATTATTTAAGTAAAAC
1 TGTTTAGATTATTCAAGTAAAAC
*
8210656 TGTTTAGATTATTCGAGTAAAA
1 TGTTTAGATTATTCAAGTAAAA
8210678 ATCTCTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.42
Consensus pattern (23 bp):
TGTTTAGATTATTCAAGTAAAAC
Found at i:8211297 original size:19 final size:18
Alignment explanation
Indices: 8211266--8211312 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
8211256 AAATAAATAG
*
8211266 TTTTATTTAAATTGTGAA
1 TTTTTTTTAAATTGTGAA
*
8211284 TTTTTTTTACAATTGTGAG
1 TTTTTTTTA-AATTGTGAA
8211303 TTTTTTTTAA
1 TTTTTTTTAA
8211313 GAAAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.62
Consensus pattern (18 bp):
TTTTTTTTAAATTGTGAA
Found at i:8211724 original size:10 final size:10
Alignment explanation
Indices: 8211709--8211738 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8211699 AAACTAAATT
*
8211709 ATAAAATTAC
1 ATAAAATTAA
8211719 ATAAAATTAA
1 ATAAAATTAA
8211729 ATAAAATTAA
1 ATAAAATTAA
8211739 TGATTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (10 bp):
ATAAAATTAA
Found at i:8212997 original size:2 final size:2
Alignment explanation
Indices: 8212990--8213025 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8212980 ACCTGTCATA
* *
8212990 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8213026 GTTGCATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
AT
Found at i:8219110 original size:16 final size:18
Alignment explanation
Indices: 8219089--8219125 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8219079 ATTATTCTTC
8219089 TTTAAAGT-TT-ATATAA
1 TTTAAAGTATTGATATAA
*
8219105 TTTAAATTATTGATATAA
1 TTTAAAGTATTGATATAA
8219123 TTT
1 TTT
8219126 TTAAGAGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
TTTAAAGTATTGATATAA
Found at i:8223614 original size:3 final size:3
Alignment explanation
Indices: 8223606--8223643 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8223596 GATTCTTTTA
8223606 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8223644 CATCTAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8224045 original size:25 final size:24
Alignment explanation
Indices: 8224016--8224090 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 24
8224006 ATCCCTACCA
8224016 AATAAAAAGAAAACAAAATA-ATATT
1 AATAAAAA-AAAACAAAA-AGATATT
8224041 AATAAAAATCAAAACATAAAAGATATT
1 AATAAAAA--AAAACA-AAAAGATATT
8224068 AGATAAACAAAGAAACAAAAAGA
1 A-ATAAA-AAA-AAACAAAAAGA
8224091 AATTTCATAC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
25 8 0.19
26 7 0.16
27 16 0.37
28 10 0.23
29 2 0.05
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.16
Consensus pattern (24 bp):
AATAAAAAAAAACAAAAAGATATT
Found at i:8227401 original size:17 final size:19
Alignment explanation
Indices: 8227381--8227418 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8227371 TTAAATTTTT
8227381 AAAATTT-TC-TATTTAAA
1 AAAATTTATCATATTTAAA
*
8227398 AAAATTTATCATCTTTAAA
1 AAAATTTATCATATTTAAA
8227417 AA
1 AA
8227419 TAAATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 2 0.11
19 9 0.50
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTTATCATATTTAAA
Found at i:8230165 original size:33 final size:33
Alignment explanation
Indices: 8230128--8230205 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
8230118 AAATAATTTA
* * * *
8230128 AATATATAAATTGATAATGTTTGACATAATATG
1 AATATATAAATTGACAATATTTAACATAACATG
* *
8230161 AATATATAAATTGGCAATATTTAACATGACATG
1 AATATATAAATTGACAATATTTAACATAACATG
8230194 AATATATAAATT
1 AATATATAAATT
8230206 ATGAAATCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.37
Consensus pattern (33 bp):
AATATATAAATTGACAATATTTAACATAACATG
Found at i:8236083 original size:16 final size:17
Alignment explanation
Indices: 8236062--8236096 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8236052 ATTTTAAATT
*
8236062 AAATAT-AAATAATTTA
1 AAATATAAAAAAATTTA
8236078 AAATATAAAAAAATTTA
1 AAATATAAAAAAATTTA
8236095 AA
1 AA
8236097 CAAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATATAAAAAAATTTA
Found at i:8236316 original size:22 final size:22
Alignment explanation
Indices: 8236275--8236317 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8236265 AATTAAAACA
*
8236275 TATTTTATTTTTATTAATTTTT
1 TATTTTATTTTTAATAATTTTT
8236297 TATTTTATATTTTAAT-ATTTT
1 TATTTTAT-TTTTAATAATTTT
8236318 CTTAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (22 bp):
TATTTTATTTTTAATAATTTTT
Found at i:8239803 original size:20 final size:20
Alignment explanation
Indices: 8239780--8239844 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
8239770 AAAAAAGCAT
8239780 AAAAATAAAAGAAAAAAATA
1 AAAAATAAAAGAAAAAAATA
*
8239800 AAAAGTAAATAG-AAAAAAT-
1 AAAAATAAA-AGAAAAAAATA
* * *
8239819 AAAAAGAAAAGAAAAAGAGA
1 AAAAATAAAAGAAAAAAATA
8239839 AAAAAT
1 AAAAAT
8239845 GAAGCAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 20 0.56
21 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAAATAAAAGAAAAAAATA
Found at i:8239815 original size:13 final size:13
Alignment explanation
Indices: 8239778--8239844 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
8239768 TTAAAAAAGC
*
8239778 ATAAAAATAAAAGA
1 ATAAAAAGAAAA-A
*
8239792 A-AAAAATAAAAA
1 ATAAAAAGAAAAA
* *
8239804 GTAAATAGAAAAA
1 ATAAAAAGAAAAA
8239817 ATAAAAAGAAAAGA
1 ATAAAAAGAAAA-A
*
8239831 A-AAAGAGAAAAA
1 ATAAAAAGAAAAA
8239843 AT
1 AT
8239845 GAAGCAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
12 3 0.07
13 38 0.86
14 3 0.07
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (13 bp):
ATAAAAAGAAAAA
Found at i:8240078 original size:17 final size:17
Alignment explanation
Indices: 8240045--8240079 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8240035 TTTATAAAGG
**
8240045 AAAAGAAAAAGCTAAAA
1 AAAAGAAAAAGAGAAAA
8240062 AAAAGAAAAAGAGAAAA
1 AAAAGAAAAAGAGAAAA
8240079 A
1 A
8240080 GGAAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAGAGAAAA
Found at i:8242531 original size:20 final size:20
Alignment explanation
Indices: 8242502--8242539 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8242492 ATTCCAAAAA
8242502 TTTTTATATTTTTATGTTTT
1 TTTTTATATTTTTATGTTTT
* *
8242522 TTTTTTTATTTTTTTGTT
1 TTTTTATATTTTTATGTT
8242540 GAAAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (20 bp):
TTTTTATATTTTTATGTTTT
Found at i:8242773 original size:23 final size:23
Alignment explanation
Indices: 8242747--8242793 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8242737 AAAATACTCC
* *
8242747 TAAAA-TAAACAAACACATAAAAA
1 TAAAATTAAAAAAAC-CAAAAAAA
8242770 TAAAATTAAAAAAACCAAAAAAA
1 TAAAATTAAAAAAACCAAAAAAA
8242793 T
1 T
8242794 GGAAATGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.15
Consensus pattern (23 bp):
TAAAATTAAAAAAACCAAAAAAA
Found at i:8243151 original size:21 final size:20
Alignment explanation
Indices: 8243121--8243164 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
8243111 TATTTAATCA
8243121 AAAATTAAAAAAGTACATCG
1 AAAATTAAAAAAGTACATCG
8243141 AAAATTAAAAAAGTACATCG
1 AAAATTAAAAAAGTACATCG
8243161 AAAA
1 AAAA
8243165 CTAGAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (20 bp):
AAAATTAAAAAAGTACATCG
Found at i:8243172 original size:21 final size:20
Alignment explanation
Indices: 8243121--8243172 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
8243111 TATTTAATCA
*
8243121 AAAATTAAAAAAGTACATCG
1 AAAACTAAAAAAGTACATCG
*
8243141 AAAATTAAAAAAGTACATCG
1 AAAACTAAAAAAGTACATCG
*
8243161 AAAACTAGAAAA
1 AAAACTAAAAAA
8243173 TCTGATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.63, C:0.10, G:0.10, T:0.17
Consensus pattern (20 bp):
AAAACTAAAAAAGTACATCG
Found at i:8243499 original size:9 final size:9
Alignment explanation
Indices: 8243481--8243530 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
8243471 CGTTTTTCTC
8243481 TTAA-TTTT
1 TTAATTTTT
8243489 TTAATTTTT
1 TTAATTTTT
**
8243498 TTACCTTTT
1 TTAATTTTT
*
8243507 TTCATTTTT
1 TTAATTTTT
*
8243516 TTTATTTTT
1 TTAATTTTT
8243525 TTAATT
1 TTAATT
8243531 AACCAAATCC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
8 4 0.12
9 30 0.88
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (9 bp):
TTAATTTTT
Found at i:8247763 original size:21 final size:21
Alignment explanation
Indices: 8247713--8247764 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
8247703 CTTACTTATT
* *
8247713 TTATATTAAAAAATTTTATAT
1 TTATATTATAAAATTTTATAA
*
8247734 TTTTA-TATAAAA-TTTATTAA
1 TTATATTATAAAATTTTA-TAA
8247754 TTATATTATAA
1 TTATATTATAA
8247765 TTAAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 9 0.36
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTATATTATAAAATTTTATAA
Found at i:8248198 original size:23 final size:24
Alignment explanation
Indices: 8248171--8248237 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 24
8248161 TTCTTTCTTG
8248171 TTTATATTAAAATTTTTTATATT-
1 TTTATATTAAAATTTTTTATATTA
*
8248194 TTTATA-TAAAATTTATTA-ATTA
1 TTTATATTAAAATTTTTTATATTA
8248216 TATTATAGTT-AAA-TTTTTATAT
1 T-TTATA-TTAAAATTTTTTATAT
8248238 GTATAATTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
21 3 0.08
22 12 0.32
23 16 0.43
24 5 0.14
25 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (24 bp):
TTTATATTAAAATTTTTTATATTA
Found at i:8248771 original size:443 final size:445
Alignment explanation
Indices: 8247704--8248791 Score: 1345
Period size: 459 Copynumber: 2.4 Consensus size: 445
8247694 ATTTTTTTTC
* *
8247704 TTACTTATTTTATATTAAAAAATTTTATATTTTTATATAAAATTTATTAATTATATTATAATTAA
1 TTACTCATTTTATATT-AAAATTTTTATATTTTTATATAAAATTTATTAATTATATTAT-ATTAA
* * *
8247769 ATTTTTATATGTATAATTGTATATTCATGCATCGCATGGTATTGAAACAAATTTTCATATTAAGT
64 ATTTTTATATGTATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATTAAGT
* * *
8247834 GTTTTATTTTAACTATATAAAAGGCAAGCATTTTATTTGATTAAGGTGGGTCACACATGAAAGCA
129 GTTTTATTTTAACAATATAAAAGGCAAGCATTTCATTTGATTAA-GTGGGTCACACATGAAAACA
* * * * * *
8247899 TATTAATTACAGTGATTGTAATATAATTAATCAATAATAATTTAAAATTATGTGAAGACGATTAC
193 TATCAACTACAATGATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAAAACGATTAC
* * ** * * *
8247964 AATTTTATATGAAACTTATACTTAAAAATGATAAACTCTTATGTAATTTTTGTTGTGATTAGATA
258 AAATTTATATAAAACCCATACTTAAAAATGATAAACTCTTATATAATTTTTATTGTGATTAAATA
* * * * *
8248029 ATTGTAATATTGTAGAAAAAATAATTGTAGCTGAAATGCTCCTATCATACACTTTTACATTTTCA
323 ATTATAATATTATAGAAAAAATAATTATAGCTGAAATACTCCTATCATACACTTTCACATTTTCA
* *
8248094 ATAACTTTATTATTATATTTAAAATTTATTATTATATAGTTATATATTTATCTACAATAT
388 ATAACTTTATTATTACATTTAAAATTTATTATCATATAGTTATATATTTATCT--AATAT
*
8248154 TTATTTCTTCTTTCTTGTTTATATTAAAATTTTTTATATTTTTATATAAAATTTATTAATTATAT
1 TTA------C--TCAT-TTTATATTAAAA-TTTTTATATTTTTATATAAAATTTATTAATTATAT
*
8248219 TATAGTTAAATTTTTATATGTATAATTGTATATTCATCCATCGCACGGTATTAAAACAAATTTCC
56 TATA-TTAAATTTTTATATGTATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCC
** *
8248284 ATATTAAGTGTTTTATTTTAACAATATAAAAGGCAAATATTTCATTTGATTAAGATGGGTTACAC
120 ATATTAAGTGTTTTATTTTAACAATATAAAAGGCAAGCATTTCATTTGATTAAG-TGGGTCACAC
* * * *
8248349 ATGAAAACATATCAACTATAATTATTATAATACAATTAATCAATCATAATTTTAAATTATGTGAA
184 ATGAAAACATATCAACTACAATGATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAA
* * *
8248414 AATC-ATTACAAATTTATATAAAACCCATA-TTAATTAGTGGTAAACTCTTATATAATTTTTCAT
249 AA-CGATTACAAATTTATATAAAACCCATACTTAA-AAATGATAAACTCTTATATAATTTTT-AT
* *
8248477 TGTGGTTAAACT-ATTATAGTATTATA-AAAAAA-AATTATAAG-TGAAATACTCTCGT-TACAT
311 TGTGATTAAA-TAATTATAATATTATAGAAAAAATAATTAT-AGCTGAAATACTC-C-TAT-CAT
* * *
8248537 A-A-TTTCATATTTTCAATAACTTTATTATTACATTTAAATTTTATTATCGTATAGTTATATATT
371 ACACTTTCACATTTTCAATAACTTTATTATTACATTTAAAATTTATTATCATATAGTTATATATT
8248600 TATCT-AT-T
436 TATCTAATAT
* * *
8248608 TTACTCATTTTATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTACATTATACTAAAA
1 TTACTCATTTTATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTATATTATATTAAAT
* * * * *
8248673 TTTTATATGTATAATTATATATTCATGCATCGTACGATACTAAAACCAATTTCCATATTGAA-TG
66 TTTTATATGTATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATT-AAGTG
* * * *
8248737 TTTTATTTTAACAACATAAAAAGCAAGCATTTCATTTAACTAAGTGGGTCACACA
130 TTTTATTTTAACAATATAAAAGGCAAGCATTTCATTTGATTAAGTGGGTCACACA
8248792 CTTCCATATT
Statistics
Matches: 555, Mismatches: 62, Indels: 50
0.83 0.09 0.07
Matches are distributed among these distances:
442 10 0.02
443 97 0.17
444 40 0.07
445 12 0.02
446 3 0.01
448 1 0.00
450 3 0.01
454 4 0.01
455 2 0.00
456 1 0.00
458 86 0.15
459 269 0.48
460 26 0.05
461 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (445 bp):
TTACTCATTTTATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTATATTATATTAAAT
TTTTATATGTATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATTAAGTGT
TTTATTTTAACAATATAAAAGGCAAGCATTTCATTTGATTAAGTGGGTCACACATGAAAACATAT
CAACTACAATGATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAAAACGATTACAAA
TTTATATAAAACCCATACTTAAAAATGATAAACTCTTATATAATTTTTATTGTGATTAAATAATT
ATAATATTATAGAAAAAATAATTATAGCTGAAATACTCCTATCATACACTTTCACATTTTCAATA
ACTTTATTATTACATTTAAAATTTATTATCATATAGTTATATATTTATCTAATAT
Found at i:8253683 original size:19 final size:19
Alignment explanation
Indices: 8253632--8253676 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
8253622 ATTTAATTTA
* *
8253632 AAAAAGCATAAAAATAAAG
1 AAAAAGAATAAAAAGAAAG
*
8253651 AAAAATAATAAAAAGAAAG
1 AAAAAGAATAAAAAGAAAG
8253670 AAAAAGA
1 AAAAAGA
8253677 GAAAAAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (19 bp):
AAAAAGAATAAAAAGAAAG
Found at i:8256359 original size:18 final size:17
Alignment explanation
Indices: 8256332--8256367 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8256322 ATTCCAAAAA
8256332 TTTTTATATTTTTATGTT
1 TTTTTATATTTTT-TGTT
*
8256350 TTTTTTTATTTTTTGTT
1 TTTTTATATTTTTTGTT
8256367 T
1 T
8256368 GAAAATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.11, C:0.00, G:0.06, T:0.83
Consensus pattern (17 bp):
TTTTTATATTTTTTGTT
Found at i:8256620 original size:23 final size:23
Alignment explanation
Indices: 8256576--8256621 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8256566 AAAATACTCC
* *
8256576 TAAAATAAACAAACACATAAAAA
1 TAAAATAAAAAAACACAAAAAAA
8256599 TAAAATAAAAAAA-ACCAAAAAAA
1 TAAAATAAAAAAACA-CAAAAAAA
8256622 ATGGAAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (23 bp):
TAAAATAAAAAAACACAAAAAAA
Found at i:8256979 original size:19 final size:20
Alignment explanation
Indices: 8256948--8256990 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
8256938 TATTTAATCA
8256948 AAAATTAAAAAAGTACATCG
1 AAAATTAAAAAAGTACATCG
8256968 AAAATT-AAAAAGTACATCG
1 AAAATTAAAAAAGTACATCG
8256987 AAAA
1 AAAA
8256991 CTAGAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.19
Consensus pattern (20 bp):
AAAATTAAAAAAGTACATCG
Found at i:8257324 original size:8 final size:8
Alignment explanation
Indices: 8257311--8257351 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
8257301 TTTCTCTTAA
8257311 TTTTTTAT
1 TTTTTTAT
8257319 TTTTTTACCT
1 TTTTTTA--T
*
8257329 TTTTTCAT
1 TTTTTTAT
8257337 TTTTTTAT
1 TTTTTTAT
8257345 TTTTTTA
1 TTTTTTA
8257352 ATTAATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 22 0.76
10 7 0.24
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTAT
Found at i:8257332 original size:18 final size:16
Alignment explanation
Indices: 8257311--8257351 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
8257301 TTTCTCTTAA
8257311 TTTTTTATTTTTTTACCT
1 TTTTTTATTTTTTTA--T
*
8257329 TTTTTCATTTTTTTAT
1 TTTTTTATTTTTTTAT
8257345 TTTTTTA
1 TTTTTTA
8257352 ATTAATCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTATTTTTTTAT
Found at i:8261464 original size:26 final size:27
Alignment explanation
Indices: 8261434--8261487 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
8261424 AACTATATTC
* *
8261434 ATTTAAATTT-TATTATTATAT-TTAA
1 ATTTTAATTTGTATAATTATATATTAA
*
8261459 ATTTTATTTTGTATAATTATATATTAA
1 ATTTTAATTTGTATAATTATATATTAA
8261486 AT
1 AT
8261488 CTGAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.33
26 10 0.42
27 6 0.25
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (27 bp):
ATTTTAATTTGTATAATTATATATTAA
Found at i:8262002 original size:23 final size:23
Alignment explanation
Indices: 8261972--8262039 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
8261962 TTCTTTCTTG
8261972 TTTTATATTAAAATTTTTTATAT
1 TTTTATATTAAAATTTTTTATAT
*
8261995 TTTTATA-TAAAATTTATTA-AT
1 TTTTATATTAAAATTTTTTATAT
8262016 TATATTATAGTT-AAA-TTTTTATAT
1 T-T-TTATA-TTAAAATTTTTTATAT
8262040 GTATAATTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
21 3 0.08
22 12 0.32
23 17 0.45
24 5 0.13
25 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (23 bp):
TTTTATATTAAAATTTTTTATAT
Found at i:8262033 original size:462 final size:447
Alignment explanation
Indices: 8261514--8262599 Score: 1337
Period size: 462 Copynumber: 2.4 Consensus size: 447
8261504 TAACTAAATA
*
8261514 ATATTAAAAAATTTTATATTTTTATATAAAATTTATTAATTATATTATAATTAAATTTTTATATG
1 ATATT-AAAATTTTTATATTTTTATATAAAATTTATTAATTATATTAT-ATTAAATTTTTATATG
* * *
8261579 TATAATTGTATATTCATGCATCGCATGGTATTGAAACAAATTTTCATATTAAGTGTTTTATTTTA
64 TATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATTAAGTGTTTTATTTTA
* * * * *
8261644 ACTATATAAAAGGCAAGCATTTTATTTGATTAAGGTGGGTCACACATGAAAGCATATTAATTACA
129 ACAATATAAAAGGCAAGCATTTCATTTGATTAAGGTGGGTCACACATGAAAACATATCAACTACA
* * * * *
8261709 GTGATTGTAATATAATTAATCAATAATAATTTAAAATTATGTGAAGA-CGATTACAATTTTATAT
194 ATGATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAAAATC-ATTACAAATTTATAT
* ** * ** * *
8261773 GAAACTTATACTTAA-AAATGATAAACTCTTATGTAATTTTTTGTTGTGATTAGA-TAATTGTAA
258 AAAACCCATA-TTAATAAATGATAAACTCTTATATAATTTTTCATTGTGATTAAACT-ATTATAA
* * * *
8261836 TATTGTAGAAAAAATAATTGT-AGCTGAAATGCTC-C--TATCATACACTTTTACATTTTCAATA
321 TATTATA-AAAAAA-AATTATAAG-TGAAATACTCTCGTTA-CATA-A-TTTCACATTTTCAATA
* *
8261897 ACTTTATTATTATATTTAAAATTTATTATTATATAGTTATATATTTATCTACAATATT-TATTTT
380 ACTTTATTATTACATTTAAAATTTATTATCATATA-TTATATATTTAT-T----TATTCTA-TTT
* *
8261961 CTTCTTTCTTGTTTT
438 -TAC--TC--ATTTT
8261976 ATATTAAAATTTTTTATATTTTTATATAAAATTTATTAATTATATTATAGTTAAATTTTTATATG
1 ATATTAAAA-TTTTTATATTTTTATATAAAATTTATTAATTATATTATA-TTAAATTTTTATATG
*
8262041 TATAATTGTATATTCATCCATCGCACGGTATTAAAACAAATTTCCATATTAAGTGTTTTATTTTA
64 TATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATTAAGTGTTTTATTTTA
** * * *
8262106 ACAATATAAAAGGCAAATATTTCATTTGATTAAGATGGGTTACACATGAAAACATATCAACTATA
129 ACAATATAAAAGGCAAGCATTTCATTTGATTAAGGTGGGTCACACATGAAAACATATCAACTACA
* * *
8262171 ATTATTATAATACAATTAATCAATCATAATTTTAAATTATGTGAAAATCATTACAAATTTATATA
194 ATGATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAAAATCATTACAAATTTATATA
* * * * *
8262236 AAACCCATATTAATTAGTGGTAAACTCTTATATAATTTTTCATTGTGGTTAAACTATTATAGTAT
259 AAACCCATATTAATAAATGATAAACTCTTATATAATTTTTCATTGTGATTAAACTATTATAATAT
*
8262301 TATAAAAAAAAATTATAAGTGAAATACTCTCGTTACATAATTTCATATTTTCAATAACTTTATTA
324 TATAAAAAAAAATTATAAGTGAAATACTCTCGTTACATAATTTCACATTTTCAATAACTTTATTA
*
8262366 TTACATTTAAATTTTATTATCATATATTATATATTTATTTATTCTATTTTACTCATTTT
389 TTACATTTAAAATTTATTATCATATATTATATATTTATTTATTCTATTTTACTCATTTT
* *
8262425 ATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTATACATTATACTAAAATTTTATATG
1 ATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTAT--ATTATATTAAATTTTTATATG
* * * * *
8262490 TATAATTATATATTCATGCATCGTACGATACTAAAACCAATTTCCATATTGAA-TGTTTTATTTT
64 TATAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATT-AAGTGTTTTATTTT
* * * *
8262554 AACAACATAAAAAGCAAGCATTTCATTTAACTAA-GTGGGTCACACA
128 AACAATATAAAAGGCAAGCATTTCATTTGATTAAGGTGGGTCACACA
8262600 CTTCCATATT
Statistics
Matches: 549, Mismatches: 62, Indels: 40
0.84 0.10 0.06
Matches are distributed among these distances:
448 43 0.08
449 109 0.20
450 8 0.01
451 2 0.00
453 2 0.00
454 7 0.01
455 2 0.00
458 1 0.00
459 12 0.02
460 60 0.11
461 19 0.03
462 280 0.51
463 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (447 bp):
ATATTAAAATTTTTATATTTTTATATAAAATTTATTAATTATATTATATTAAATTTTTATATGTA
TAATTGTATATTCATGCATCGCACGGTATTAAAACAAATTTCCATATTAAGTGTTTTATTTTAAC
AATATAAAAGGCAAGCATTTCATTTGATTAAGGTGGGTCACACATGAAAACATATCAACTACAAT
GATTATAATACAATTAATCAATAATAATTTAAAATTATGTGAAAATCATTACAAATTTATATAAA
ACCCATATTAATAAATGATAAACTCTTATATAATTTTTCATTGTGATTAAACTATTATAATATTA
TAAAAAAAAATTATAAGTGAAATACTCTCGTTACATAATTTCACATTTTCAATAACTTTATTATT
ACATTTAAAATTTATTATCATATATTATATATTTATTTATTCTATTTTACTCATTTT
Found at i:8265235 original size:39 final size:39
Alignment explanation
Indices: 8265192--8265310 Score: 141
Period size: 39 Copynumber: 3.1 Consensus size: 39
8265182 GATCTGATGG
*
8265192 ATCAGCAATTGCAGCCTCAATTGAATGCCTTTGGGGATA
1 ATCAGCAGTTGCAGCCTCAATTGAATGCCTTTGGGGATA
** * * *
8265231 ATCAGCAGCCGCAG-TTGCAATTGAATGCCATTGGTGATA
1 ATCAGCAGTTGCAGCCT-CAATTGAATGCCTTTGGGGATA
* * *
8265270 ATCAGCAGTTGGAGCCTGAAATGAATGCCTTTGGGGATA
1 ATCAGCAGTTGCAGCCTCAATTGAATGCCTTTGGGGATA
8265309 AT
1 AT
8265311 ATGATAAATC
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
38 1 0.02
39 62 0.97
40 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (39 bp):
ATCAGCAGTTGCAGCCTCAATTGAATGCCTTTGGGGATA
Found at i:8266606 original size:2 final size:2
Alignment explanation
Indices: 8266590--8266623 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8266580 ATAATTTTGG
*
8266590 TA TA -A TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8266624 GAATTATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8270948 original size:12 final size:12
Alignment explanation
Indices: 8270931--8270955 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8270921 GTTTCATGAC
8270931 CTTCATTACTAG
1 CTTCATTACTAG
8270943 CTTCATTACTAG
1 CTTCATTACTAG
8270955 C
1 C
8270956 ATTACCCCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (12 bp):
CTTCATTACTAG
Found at i:8271020 original size:18 final size:18
Alignment explanation
Indices: 8270956--8271008 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
8270946 CATTACTAGC
8270956 ATTACCCCGTACCACTACT
1 ATTA-CCCGTACCACTACT
8270975 ATTACCCGTACCACTACT
1 ATTACCCGTACCACTACT
* *
8270993 ACTACCCTTACCACTA
1 ATTACCCGTACCACTA
8271009 GCATTAACCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.28, C:0.42, G:0.04, T:0.26
Consensus pattern (18 bp):
ATTACCCGTACCACTACT
Found at i:8276844 original size:42 final size:42
Alignment explanation
Indices: 8276769--8276868 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
8276759 TACAAATGCA
* * *
8276769 AAACAACTTTAAATTAAGAAATAAGCTTCTCTATATAGAGGTT
1 AAACAAATTTAAA-TAAGAAATAAGCTTATCTATATAGAGGCT
**
8276812 AAACAAATTTAAATAAGAAATGGGCTTATCTATATAGAGGCT
1 AAACAAATTTAAATAAGAAATAAGCTTATCTATATAGAGGCT
*
8276854 AAACAATTTTAAATA
1 AAACAAATTTAAATA
8276869 GAATCCTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 39 0.76
43 12 0.24
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (42 bp):
AAACAAATTTAAATAAGAAATAAGCTTATCTATATAGAGGCT
Found at i:8289161 original size:16 final size:17
Alignment explanation
Indices: 8289134--8289171 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
8289124 AATCAAATTG
*
8289134 TTTTTTATTTTATTTTA
1 TTTTTTATTTTATTTAA
8289151 TTTTTTA-TTTATTTAA
1 TTTTTTATTTTATTTAA
8289167 TTTTT
1 TTTTT
8289172 ATTAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTATTTTATTTAA
Found at i:8289868 original size:41 final size:41
Alignment explanation
Indices: 8289823--8289900 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
8289813 AAATATTAGT
* * *
8289823 ATTTATTGCATCAATTTTTA-ATATTAAAAATTTTAATTTGA
1 ATTTATTGAATCAATTGTGACAT-TTAAAAATTTTAATTTGA
*
8289864 ATTTATTGAATTAATTGTGACATTTAAAAATTTTAAT
1 ATTTATTGAATCAATTGTGACATTTAAAAATTTTAAT
8289901 ATAAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
41 30 0.94
42 2 0.06
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (41 bp):
ATTTATTGAATCAATTGTGACATTTAAAAATTTTAATTTGA
Found at i:8290226 original size:15 final size:16
Alignment explanation
Indices: 8290206--8290240 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8290196 ATTTTAACAA
8290206 AAATAAATA-ACAAAC
1 AAATAAATATACAAAC
*
8290221 AAATAAATATACAAAT
1 AAATAAATATACAAAC
8290237 AAAT
1 AAAT
8290241 GAGCGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAATATACAAAC
Found at i:8301230 original size:20 final size:20
Alignment explanation
Indices: 8301205--8301246 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8301195 CTATGGGAGG
*
8301205 TTGGGAGAGCAATTGTTGGA
1 TTGGGAGAGCAATGGTTGGA
8301225 TTGGGAGAGCAATGGTTGGA
1 TTGGGAGAGCAATGGTTGGA
8301245 TT
1 TT
8301247 AAGACGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.40, T:0.31
Consensus pattern (20 bp):
TTGGGAGAGCAATGGTTGGA
Found at i:8307354 original size:22 final size:22
Alignment explanation
Indices: 8307329--8307372 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8307319 TATATATTTA
*
8307329 TATTTATCTCTCTACAATTAAG
1 TATTTATATCTCTACAATTAAG
* *
8307351 TATTTGTATCTCTAGAATTAAG
1 TATTTATATCTCTACAATTAAG
8307373 GACAAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (22 bp):
TATTTATATCTCTACAATTAAG
Found at i:8307537 original size:22 final size:24
Alignment explanation
Indices: 8307511--8307558 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
8307501 AATATACATT
*
8307511 CAGTTTTGCTT-TTAG-TTTTTCA
1 CAGTTTTACTTCTTAGTTTTTTCA
*
8307533 CAGTTTTATTTCTTAGTTTTTTCA
1 CAGTTTTACTTCTTAGTTTTTTCA
8307557 CA
1 CA
8307559 TGGTATAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 9 0.41
23 4 0.18
24 9 0.41
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.58
Consensus pattern (24 bp):
CAGTTTTACTTCTTAGTTTTTTCA
Found at i:8311340 original size:22 final size:22
Alignment explanation
Indices: 8311314--8311356 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8311304 TGTATATTTA
8311314 TATTTGTA-TCTCTAGAATTAAG
1 TATTTGTATTC-CTAGAATTAAG
8311336 TATTTGTATTCCTAGAATTAA
1 TATTTGTATTCCTAGAATTAA
8311357 AGACAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (22 bp):
TATTTGTATTCCTAGAATTAAG
Found at i:8312172 original size:21 final size:20
Alignment explanation
Indices: 8312132--8312172 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8312122 TGTTCATTTA
* *
8312132 ATCAAATACAAGTTACTTGC
1 ATCAAAGACAAGTAACTTGC
8312152 ATCAAAGACAAGTAAACTTGC
1 ATCAAAGACAAGT-AACTTGC
8312173 CCTCTTCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (20 bp):
ATCAAAGACAAGTAACTTGC
Found at i:8313629 original size:27 final size:26
Alignment explanation
Indices: 8313589--8313646 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
8313579 AAATAAGATG
*
8313589 ATATTATATAATCTAATCCTATTTATA
1 ATATTATATAATCTAATCCTA-TCATA
* * * *
8313616 ATATTATCTTATCTTATCTTATCATA
1 ATATTATATAATCTAATCCTATCATA
8313642 ATATT
1 ATATT
8313647 GTGTACCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (26 bp):
ATATTATATAATCTAATCCTATCATA
Found at i:8314411 original size:16 final size:16
Alignment explanation
Indices: 8314367--8314413 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8314357 TGATCCAAAT
8314367 CCAAAATGA-CTCAAAA
1 CCAAAATGACCT-AAAA
**
8314383 CCTAAAACAACCTAAAA
1 CC-AAAATGACCTAAAA
8314400 CCAAAATGACCTAA
1 CCAAAATGACCTAA
8314414 TCGAAAATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 12 0.48
17 11 0.44
18 2 0.08
ACGTcount: A:0.55, C:0.28, G:0.04, T:0.13
Consensus pattern (16 bp):
CCAAAATGACCTAAAA
Found at i:8327900 original size:115 final size:115
Alignment explanation
Indices: 8327698--8327931 Score: 425
Period size: 115 Copynumber: 2.0 Consensus size: 115
8327688 GAATTGATTA
* *
8327698 AAAGTCTTGATTTGATAAAACAAAAATTTGTCTAACTTGAATCAAACTCTTTTAATCTTAAATTG
1 AAAGTCTTGATTTAATAAAACAAAAATTTGCCTAACTTGAATCAAACTCTTTTAATCTTAAATTG
8327763 AACATTTTTTCAACCTTCTATCTTGTCAAAATTCATTTAGGAACTAAAAT
66 AACATTTTTTCAACCTTCTATCTTGTCAAAATTCATTTAGGAACTAAAAT
8327813 AAAGTCTTGATTTAATAAAACAAAAATTTGCCTAACTTGAATCAAACT-TTTCTAATCTTAAATT
1 AAAGTCTTGATTTAATAAAACAAAAATTTGCCTAACTTGAATCAAACTCTTT-TAATCTTAAATT
*
8327877 GAACATTTTTTCAACCTTCTATCTTGTCAAAATTTATTTAGGAACTAAAAT
65 GAACATTTTTTCAACCTTCTATCTTGTCAAAATTCATTTAGGAACTAAAAT
8327928 AAAG
1 AAAG
8327932 CAAGTTCTGA
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
114 3 0.03
115 112 0.97
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (115 bp):
AAAGTCTTGATTTAATAAAACAAAAATTTGCCTAACTTGAATCAAACTCTTTTAATCTTAAATTG
AACATTTTTTCAACCTTCTATCTTGTCAAAATTCATTTAGGAACTAAAAT
Found at i:8336170 original size:14 final size:15
Alignment explanation
Indices: 8336151--8336186 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
8336141 TATATCACTT
8336151 TGAAATT-TGGCTTG
1 TGAAATTATGGCTTG
8336165 TGAAATTATGGCTTG
1 TGAAATTATGGCTTG
8336180 TGAAATT
1 TGAAATT
8336187 GATATATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.42
Consensus pattern (15 bp):
TGAAATTATGGCTTG
Found at i:8337160 original size:115 final size:115
Alignment explanation
Indices: 8336958--8337186 Score: 275
Period size: 115 Copynumber: 2.0 Consensus size: 115
8336948 GTTAGATCCC
* * * * * *
8336958 TCCCTTAAAGGGATCGATCTCTTTTTTATACAGAATGTAATATGGGTTCGAAAATGCACAAAAGG
1 TCCCTTAAAGGGATCGATCTATTTTTTACACAGAATGTAATATGCGTTCAAAAATCCAAAAAAGG
*** * *
8337023 GATCGATTTTCCCATATAGGGATCGATCA-CCTAGGCATGGGATCGATCAT
66 GATCGATCCCCCCATATAGGGATCGATCACCCAAGGAAT-GGATCGATCAT
* * *
8337073 TCCCTTAAAGGGATCGATCTATTTTTTACACAGAATGTTATCCT-CGTTTAAAAATCCAAAAAAG
1 TCCCTTAAAGGGATCGATCTATTTTTTACACAGAATGTAAT-ATGCGTTCAAAAATCCAAAAAAG
*
8337137 GGATCGATCCCCCACATAT-GGGATTGATCACCCAAGGAATGGATCGATCA
65 GGATCGATCCCCC-CATATAGGGATCGATCACCCAAGGAATGGATCGATCA
8337187 GGTACACTAC
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
115 83 0.86
116 13 0.14
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (115 bp):
TCCCTTAAAGGGATCGATCTATTTTTTACACAGAATGTAATATGCGTTCAAAAATCCAAAAAAGG
GATCGATCCCCCCATATAGGGATCGATCACCCAAGGAATGGATCGATCAT
Found at i:8341127 original size:61 final size:62
Alignment explanation
Indices: 8341052--8341173 Score: 192
Period size: 61 Copynumber: 2.0 Consensus size: 62
8341042 TTTCAAGTTC
*
8341052 TGTTTGAGATATTTAATAATTTAATTTATAATAATGAGA-TAATTTTTTATTTGTTAGTTTT
1 TGTTTGAGATATTTAATAACTTAATTTATAATAATGAGATTAATTTTTTATTTGTTAGTTTT
* * * *
8341113 TGTTTGAGATATTTAATAACTTGATTTATAATAGTGATATTCATTTTTTATTTGTTAGTTT
1 TGTTTGAGATATTTAATAACTTAATTTATAATAATGAGATTAATTTTTTATTTGTTAGTTT
8341174 ATGTGCCCCT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 35 0.64
62 20 0.36
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (62 bp):
TGTTTGAGATATTTAATAACTTAATTTATAATAATGAGATTAATTTTTTATTTGTTAGTTTT
Found at i:8343745 original size:26 final size:24
Alignment explanation
Indices: 8343718--8343771 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 24
8343708 GTGTTCTGTA
8343718 TTTAGGTTTGTGCTCTTTTTCTTTTAT
1 TTTA-GTTT-TGC-CTTTTTCTTTTAT
* *
8343745 TTTAGTTTTGCCTTTTTTTTTTGT
1 TTTAGTTTTGCCTTTTTCTTTTAT
8343769 TTT
1 TTT
8343772 TTAGTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.56
25 3 0.12
26 4 0.16
27 4 0.16
ACGTcount: A:0.06, C:0.09, G:0.13, T:0.72
Consensus pattern (24 bp):
TTTAGTTTTGCCTTTTTCTTTTAT
Found at i:8346808 original size:23 final size:23
Alignment explanation
Indices: 8346758--8346821 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 23
8346748 CCCATGCTTA
8346758 AAAACCCTAAGGCTCCCAAACCC
1 AAAACCCTAAGGCTCCCAAACCC
* * *
8346781 AAAACCC-AAGTCTCCCATACGC
1 AAAACCCTAAGGCTCCCAAACCC
*
8346803 AGAAACCTTAAGGCTCCCA
1 A-AAACCCTAAGGCTCCCA
8346822 TGCCTTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 13 0.38
23 12 0.35
24 9 0.26
ACGTcount: A:0.38, C:0.39, G:0.11, T:0.12
Consensus pattern (23 bp):
AAAACCCTAAGGCTCCCAAACCC
Found at i:8347752 original size:3 final size:3
Alignment explanation
Indices: 8347738--8347787 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
8347728 TTGTTATTTT
* * *
8347738 ATA ATA ATTA ATA ATA ATA ATA ATG ATA ATA ACA ACA ATA ATA A-A
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8347783 ATA AT
1 ATA AT
8347788 GATTTCAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8348259 original size:28 final size:28
Alignment explanation
Indices: 8348157--8348284 Score: 107
Period size: 30 Copynumber: 4.4 Consensus size: 28
8348147 TCAAAACCCT
* *
8348157 CCAAACACTAAAA-CTAAAACCCTAAACC
1 CCAAACCCTAAAATC-AAAACCCTAAATC
* *
8348185 CTTCAAACCCTAAAATTAAAACCTTAAA-C
1 C--CAAACCCTAAAATCAAAACCCTAAATC
* * * *
8348214 ACTTTAAACTCTAAAATCGAAACCTTAAATC
1 -C--CAAACCCTAAAATCAAAACCCTAAATC
*
8348245 CCAAACCTTAAAATCAAAACCCTAAATC
1 CCAAACCCTAAAATCAAAACCCTAAATC
8348273 CCAAACCCTAAA
1 CCAAACCCTAAA
8348285 CCCTAAAACT
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
28 34 0.41
29 1 0.01
30 46 0.56
31 1 0.01
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.20
Consensus pattern (28 bp):
CCAAACCCTAAAATCAAAACCCTAAATC
Found at i:8348278 original size:14 final size:14
Alignment explanation
Indices: 8348233--8348284 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
8348223 TCTAAAATCG
*
8348233 AAACCTTAAATCCC
1 AAACCCTAAATCCC
* *
8348247 AAACCTTAAAAT-CA
1 AAACCCT-AAATCCC
8348261 AAACCCTAAATCCC
1 AAACCCTAAATCCC
8348275 AAACCCTAAA
1 AAACCCTAAA
8348285 CCCTAAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 4 0.12
14 25 0.76
15 4 0.12
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCCTAAATCCC
Found at i:8348299 original size:14 final size:14
Alignment explanation
Indices: 8348282--8348439 Score: 63
Period size: 14 Copynumber: 10.9 Consensus size: 14
8348272 CCCAAACCCT
8348282 AAACCCTAAAACTA
1 AAACCCTAAAACTA
* * *
8348296 AAACCTTAAACCTCC
1 AAACCCTAAAACT-A
* *
8348311 AAA-TCAAAACACTA
1 AAACCCTAAA-ACTA
* *
8348325 AAACCCTAAACATTTT
1 AAACCCTAAA-A-CTA
*
8348341 AAACCATAAAA-TCA
1 AAACCCTAAAACT-A
* *
8348355 AAATCCTAAATCCT-
1 AAACCCTAAA-ACTA
8348369 AAACCCTAAAA-TAA
1 AAACCCTAAAACT-A
*
8348383 AAACCCTAAAAATCGA
1 AAACCCT-AAAA-CTA
*
8348399 AAACCCTAAAACTTT
1 AAACCCTAAAAC-TA
* * *
8348414 AAACCCTCAAATTG
1 AAACCCTAAAACTA
8348428 AAACCCTAAAAC
1 AAACCCTAAAAC
8348440 CCTAAACCTC
Statistics
Matches: 104, Mismatches: 27, Indels: 26
0.66 0.17 0.17
Matches are distributed among these distances:
12 1 0.01
13 1 0.01
14 53 0.51
15 30 0.29
16 19 0.18
ACGTcount: A:0.53, C:0.27, G:0.01, T:0.19
Consensus pattern (14 bp):
AAACCCTAAAACTA
Found at i:8348299 original size:21 final size:20
Alignment explanation
Indices: 8348261--8348334 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
8348251 CTTAAAATCA
*
8348261 AAACCCTAAATCCCAAACCCT
1 AAACCCTAAAT-CAAAACCCT
* *
8348282 AAACCCTAAAACTAAAACCTT
1 AAACCCTAAATC-AAAACCCT
* *
8348303 AAACCTCCAAATCAAAACACT
1 AAACC-CTAAATCAAAACCCT
8348324 AAAACCCTAAA
1 -AAACCCTAAA
8348335 CATTTTAAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.02
21 31 0.74
22 10 0.24
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (20 bp):
AAACCCTAAATCAAAACCCT
Found at i:8348373 original size:122 final size:124
Alignment explanation
Indices: 8348150--8348392 Score: 307
Period size: 122 Copynumber: 2.0 Consensus size: 124
8348140 TTAAAATTCA
* * * *
8348150 AAACCCTCCAAACACTAAAACTAAAACCCTAAACCCTTCAAACCCTAAAATTAAAACCTTAAACA
1 AAACCCT-CAAACACTAAAACTAAAACCCTAAACCCTCCAAACCCAAAAACTAAAACCCTAAACA
* * *
8348215 CTTTAAACTCTAAAATCGAAACCTTAAATCCCAAACCTTAAAATCAAAACCCTAAATCCC
65 CTTTAAACTCTAAAATCAAAACCTTAAATCCCAAACCCTAAAATAAAAACCCTAAATCCC
* * *
8348275 AAACCCT-AAACCCTAAAACTAAAACCTTAAA-CCTCCAAA-TCAAAACACTAAAACCCTAAACA
1 AAACCCTCAAACACTAAAACTAAAACCCTAAACCCTCCAAACCCAAAA-ACTAAAACCCTAAACA
* *
8348337 TTTTAAAC-CATAAAATCAAAATCC-TAAATCCTAAACCCTAAAATAAAAACCCTAAA
65 CTTTAAACTC-TAAAATCAAAA-CCTTAAATCCCAAACCCTAAAATAAAAACCCTAAA
8348393 AATCGAAAAC
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
121 5 0.05
122 67 0.65
123 24 0.23
125 7 0.07
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (124 bp):
AAACCCTCAAACACTAAAACTAAAACCCTAAACCCTCCAAACCCAAAAACTAAAACCCTAAACAC
TTTAAACTCTAAAATCAAAACCTTAAATCCCAAACCCTAAAATAAAAACCCTAAATCCC
Found at i:8348403 original size:16 final size:15
Alignment explanation
Indices: 8348369--8348409 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
8348359 CCTAAATCCT
8348369 AAACCCT-AAAATAA
1 AAACCCTAAAAATAA
*
8348383 AAACCCTAAAAATCGA
1 AAACCCTAAAAAT-AA
8348399 AAACCCTAAAA
1 AAACCCTAAAA
8348410 CTTTAAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 7 0.29
15 5 0.21
16 12 0.50
ACGTcount: A:0.61, C:0.24, G:0.02, T:0.12
Consensus pattern (15 bp):
AAACCCTAAAAATAA
Found at i:8350662 original size:18 final size:18
Alignment explanation
Indices: 8350639--8350682 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
8350629 CAATTCCTTT
8350639 AAAAAAAACCACAAAAGA-
1 AAAAAAAACCACAAAA-AC
* *
8350657 AAAAAAATCGACAAAAAC
1 AAAAAAAACCACAAAAAC
8350675 AAAAAAAA
1 AAAAAAAA
8350683 GTTTTGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.80, C:0.14, G:0.05, T:0.02
Consensus pattern (18 bp):
AAAAAAAACCACAAAAAC
Found at i:8350673 original size:19 final size:17
Alignment explanation
Indices: 8350639--8350682 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
8350629 CAATTCCTTT
*
8350639 AAAAAAAACCACAAAAG
1 AAAAAAAACCACAAAAC
*
8350656 AAAAAAAATCGACAAAAAC
1 AAAAAAAA-CCAC-AAAAC
8350675 AAAAAAAA
1 AAAAAAAA
8350683 GTTTTGGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 3 0.13
19 12 0.52
ACGTcount: A:0.80, C:0.14, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAAAAAACCACAAAAC
Found at i:8353797 original size:21 final size:21
Alignment explanation
Indices: 8353758--8353797 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8353748 ATTTCACAAT
8353758 ATAATATAATTTTTAAATTAA
1 ATAATATAATTTTTAAATTAA
*
8353779 ATAA-ATATTTTTTATAATT
1 ATAATATAATTTTTA-AATT
8353798 GATTTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATAATATAATTTTTAAATTAA
Found at i:8355587 original size:20 final size:19
Alignment explanation
Indices: 8355564--8355615 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
8355554 ATATATTTTC
8355564 ATAAATTTACATGTAAATAA
1 ATAAATTTACAT-TAAATAA
*
8355584 ATAAATTATATATTAAATAA
1 ATAAATT-TACATTAAATAA
8355604 AT-AATTTACATT
1 ATAAATTTACATT
8355616 TTAAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 5 0.17
19 4 0.14
20 16 0.55
21 4 0.14
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (19 bp):
ATAAATTTACATTAAATAA
Found at i:8355619 original size:20 final size:20
Alignment explanation
Indices: 8355567--8355622 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
8355557 TATTTTCATA
*
8355567 AATTTACA-TGTAAATAAAT
1 AATTTACATTTTAAATAAAT
* * *
8355586 AAATTATATATTAAATAAAT
1 AATTTACATTTTAAATAAAT
8355606 AATTTACATTTTAAATA
1 AATTTACATTTTAAATA
8355623 TATTATATGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 6 0.21
20 23 0.79
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTTACATTTTAAATAAAT
Found at i:8355927 original size:17 final size:19
Alignment explanation
Indices: 8355907--8355973 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
8355897 TTTAAAAAAT
8355907 ATAAAT-TAT-CATGTTAA
1 ATAAATATATACATGTTAA
*
8355924 ATAAACTATTTACATGTTAA
1 ATAAA-TATATACATGTTAA
*
8355944 ATAAATAAATA-AT-TTAA
1 ATAAATATATACATGTTAA
8355961 ATATAATTATATA
1 ATA-AA-TATATA
8355974 TCATATGTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.29
18 5 0.12
19 11 0.27
20 13 0.32
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (19 bp):
ATAAATATATACATGTTAA
Found at i:8360349 original size:28 final size:28
Alignment explanation
Indices: 8360317--8360372 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8360307 TATCTGATTC
* *
8360317 CTATGTCTTGAGTGTTTTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8360345 CTATGTCTTGAGTATTGTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8360373 TTTAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (28 bp):
CTATGTCTTGAGTATTGTTCATTAGTAA
Found at i:8362041 original size:15 final size:15
Alignment explanation
Indices: 8361987--8362062 Score: 84
Period size: 14 Copynumber: 5.1 Consensus size: 15
8361977 TGGGTTTTAA
*
8361987 TTTAAGAGTTTGGAT
1 TTTAAGGGTTTGGAT
**
8362002 TTTAGAGATTTTGGAT
1 TTTA-AGGGTTTGGAT
8362018 TTT-AGGGTTTGGAT
1 TTTAAGGGTTTGGAT
*
8362032 TTTAAGGGTTTCGAT
1 TTTAAGGGTTTGGAT
*
8362047 TTT-AGGGTTTGAAT
1 TTTAAGGGTTTGGAT
8362061 TT
1 TT
8362063 AGGGGATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
14 23 0.43
15 17 0.32
16 13 0.25
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.50
Consensus pattern (15 bp):
TTTAAGGGTTTGGAT
Found at i:8362055 original size:29 final size:30
Alignment explanation
Indices: 8361994--8362062 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
8361984 TAATTTAAGA
* *
8361994 GTTTGGATTTTAGAGATTTTGGATTTTAGG
1 GTTTGGATTTTAGAGAGTTTCGATTTTAGG
*
8362024 GTTTGGATTTTA-AGGGTTTCGATTTTAGG
1 GTTTGGATTTTAGAGAGTTTCGATTTTAGG
*
8362053 GTTTGAATTT
1 GTTTGGATTT
8362063 AGGGGATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 23 0.66
30 12 0.34
ACGTcount: A:0.19, C:0.01, G:0.29, T:0.51
Consensus pattern (30 bp):
GTTTGGATTTTAGAGAGTTTCGATTTTAGG
Found at i:8362082 original size:8 final size:7
Alignment explanation
Indices: 8362067--8362123 Score: 51
Period size: 8 Copynumber: 7.3 Consensus size: 7
8362057 GAATTTAGGG
8362067 GATTTTA
1 GATTTTA
8362074 GATTTTTA
1 GA-TTTTA
*
8362082 GAGGTTTCA
1 GA--TTTTA
8362091 GATTTTA
1 GATTTTA
8362098 GGATTTTA
1 -GATTTTA
8362106 GATTTTAA
1 GATTTT-A
8362114 GAGTTTTA
1 GA-TTTTA
8362122 GA
1 GA
8362124 AACCTATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
7 12 0.29
8 20 0.48
9 10 0.24
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (7 bp):
GATTTTA
Found at i:8362110 original size:15 final size:15
Alignment explanation
Indices: 8361999--8362123 Score: 69
Period size: 15 Copynumber: 8.1 Consensus size: 15
8361989 TAAGAGTTTG
*
8361999 GATTTTAGAGATTTTG
1 GATTTTAG-GATTTTA
* *
8362015 GATTTTAGG-GTTTG
1 GATTTTAGGATTTTA
* *
8362029 GATTTTAAGG-GTTTC
1 GATTTT-AGGATTTTA
*
8362044 GATTTTAGG-GTTT-
1 GATTTTAGGATTTTA
*
8362057 GAATTTAGGGGATTTTA
1 GATTTTA--GGATTTTA
* *
8362074 GATTTTTAGAGGTTTCA
1 GA-TTTTAG-GATTTTA
8362091 GATTTTAGGATTTTA
1 GATTTTAGGATTTTA
*
8362106 GATTTTAAGAGTTTTA
1 GATTTTAGGA-TTTTA
8362122 GA
1 GA
8362124 AACCTATGAT
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
13 6 0.07
14 17 0.19
15 30 0.33
16 25 0.27
17 9 0.10
18 4 0.04
ACGTcount: A:0.24, C:0.02, G:0.26, T:0.48
Consensus pattern (15 bp):
GATTTTAGGATTTTA
Found at i:8363501 original size:20 final size:20
Alignment explanation
Indices: 8363463--8363501 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8363453 CACCAGCCAC
*
8363463 CCTACTTTCTATTTTTTTTT
1 CCTACTTTCTATTTCTTTTT
* *
8363483 CCTATTTTCTCTTTCTTTT
1 CCTACTTTCTATTTCTTTT
8363502 CTTTTTTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (20 bp):
CCTACTTTCTATTTCTTTTT
Found at i:8363550 original size:3 final size:3
Alignment explanation
Indices: 8363542--8363568 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8363532 AAAAATATAT
8363542 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
8363569 ATTTTAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8363989 original size:110 final size:109
Alignment explanation
Indices: 8363710--8364546 Score: 937
Period size: 110 Copynumber: 7.6 Consensus size: 109
8363700 AAACACAAAA
* * * ** * * *
8363710 CGATTGGGATGACATCGCAAGTCGAAAA-ATAGTGAATCGATTGAAATAACACCGTGAATCGAAT
1 CGATTGGGATAACATCGCAAGTC-AAAAGATA-AGAATCGATCGGGATAACACCGCGAATCAAAA
* * *
8363774 TTATGCCCGGAGGTCTTAGAGATCATGCTTGGAA-GTTTTACAGAAT
64 TTATGCCCGGAGGTCTTAGAAATCATGC-TCGAAGGTCTTACAGAAT
** * * * * * * *
8363820 CGA-CAGGACAACACCGTAAGTCAAAAAATCAAGAATCGATCAGGATAATACCGCGAATCAAATT
1 CGATTGGGATAACATCGCAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGCGAATCAAAAT
* * *
8363884 TATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGATT
65 TATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* *
8363929 CGATTGGGATAACATCGCAAGTCAAAAGATCAAGAATCAATCGGGATAATACCGCGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGCGAATCAAAAT
* ** *
8363994 TATGCCCGGAGGTCTTAAAAATCATATTCGAAGGTCTTATAGAAT
65 TATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* ** * *
8364039 CGACTGGGATAACA-CTGCAAGTTGAAAGATAAGGAATCGATCAGGATAACACCGCGAATCGAAA
1 CGATTGGGATAACATC-GCAAGTCAAAAGATAA-GAATCGATCGGGATAACACCGCGAATCAAAA
*
8364103 TTATGCTCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
64 TTATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* * * *
8364149 CGACTGGGATAACATCGCGAGTCAAAAGATAAGGAATCGATCGGGATAACATCGTGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGATAA-GAATCGATCGGGATAACACCGCGAATCAAAAT
* * * *
8364214 TATACCTGAAGGTTTTAGAAATCATG-TCCGAAGGTCTTACAGAAT
65 TATGCCCGGAGGTCTTAGAAATCATGCT-CGAAGGTCTTACAGAAT
* *
8364259 CGATTGGGATAATATCGCAAGTCAAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGCGAATCAAAAT
* * *
8364324 TATGCCCAGAGGTCTTAAAAATCATGCCCGAAGGTCTTACAGAAT
65 TATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* * * * * *
8364369 CGATTGGGACAACACCGCGAGTCGAAAGATAAGGAATCAATCGGGATAACACCACGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGATAA-GAATCGATCGGGATAACACCGCGAATCAAAAT
* * * *
8364434 TATCCCCGAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAAT
65 TATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* * * ** * * *
8364479 CGACTGAGATAACACCATAAATCAAAAGATAAAGAATCGATCGGAATAACACCGTGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGCGAATCAAAAT
8364544 TAT
65 TAT
8364547 ACCCAAAGAT
Statistics
Matches: 617, Mismatches: 98, Indels: 24
0.83 0.13 0.03
Matches are distributed among these distances:
108 6 0.01
109 85 0.14
110 521 0.84
111 5 0.01
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (109 bp):
CGATTGGGATAACATCGCAAGTCAAAAGATAAGAATCGATCGGGATAACACCGCGAATCAAAATT
ATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
Found at i:8364130 original size:22 final size:22
Alignment explanation
Indices: 8364099--8364142 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8364089 ACCGCGAATC
* *
8364099 GAAATTATGCTCGGAGGTCTTA
1 GAAATCATGCTCGAAGGTCTTA
8364121 GAAATCATGCTCGAAGGTCTTA
1 GAAATCATGCTCGAAGGTCTTA
8364143 CAGAATCGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (22 bp):
GAAATCATGCTCGAAGGTCTTA
Found at i:8364141 original size:220 final size:220
Alignment explanation
Indices: 8363710--8364546 Score: 1038
Period size: 220 Copynumber: 3.8 Consensus size: 220
8363700 AAACACAAAA
* * * ** * *
8363710 CGATTGGGATGACATCGCAAGTCGAAAA-AT-AGTGAATCGATTGAAATAACACCGTGAATCGAA
1 CGATTGGGATAACATCGCAAGTC-AAAAGATAAG-GAATCAATCGGGATAACACCGCGAATCAAA
* * * * * * *
8363773 TTTATGCCCGGAGGTCTTAGAGATCATGCTTGGAA-GTTTTACAGAATCGAC-AGGACAACACCG
64 ATTATGCCCGAAGGTCTTAGAAATCATG-TTCGAAGGTCTTACAGAATCGACTGGGATAACACCG
* * * * *
8363836 TAAGTCAAAAAATCAAGAATCGATCAGGATAATACCGCGAATCAAATTTATGCCCGGAGGTCTTA
128 CAAGTCAAAAGATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCGGAGGTCTTA
* *
8363901 GAAATCATGCCCGGAGGTCTTACAGATT
193 GAAATCATGCCCGAAGGTCTTACAGAAT
*
8363929 CGATTGGGATAACATCGCAAGTCAAAAGATCAA-GAATCAATCGGGATAATACCGCGAATCAAAA
1 CGATTGGGATAACATCGCAAGTCAAAAGAT-AAGGAATCAATCGGGATAACACCGCGAATCAAAA
* * * * *
8363993 TTATGCCCGGAGGTCTTAAAAATCATATTCGAAGGTCTTATAGAATCGACTGGGATAACACTGCA
65 TTATGCCCGAAGGTCTTAGAAATCATGTTCGAAGGTCTTACAGAATCGACTGGGATAACACCGCA
** * * *
8364058 AGTTGAAAGATAAGGAATCGATCAGGATAACACCGCGAATCGAAATTATGCTCGGAGGTCTTAGA
130 AGTCAAAAGATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCGGAGGTCTTAGA
*
8364123 AATCATGCTCGAAGGTCTTACAGAAT
195 AATCATGCCCGAAGGTCTTACAGAAT
* * * * *
8364149 CGACTGGGATAACATCGCGAGTCAAAAGATAAGGAATCGATCGGGATAACATCGTGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGATAAGGAATCAATCGGGATAACACCGCGAATCAAAAT
* * * * * * *
8364214 TATACCTGAAGGTTTTAGAAATCATGTCCGAAGGTCTTACAGAATCGATTGGGATAATATCGCAA
66 TATGCCCGAAGGTCTTAGAAATCATGTTCGAAGGTCTTACAGAATCGACTGGGATAACACCGCAA
* * * *
8364279 GTCAAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTAAAA
131 GTCAAAAGATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCGGAGGTCTTAGAA
8364344 ATCATGCCCGAAGGTCTTACAGAAT
196 ATCATGCCCGAAGGTCTTACAGAAT
* * * * *
8364369 CGATTGGGACAACACCGCGAGTCGAAAGATAAGGAATCAATCGGGATAACACCACGAATCAAAAT
1 CGATTGGGATAACATCGCAAGTCAAAAGATAAGGAATCAATCGGGATAACACCGCGAATCAAAAT
* * * **
8364434 TATCCCCGAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGACTGAGATAACACCATAA
66 TATGCCCGAAGGTCTTAGAAATCATGTTCGAAGGTCTTACAGAATCGACTGGGATAACACCGCAA
* *
8364499 ATCAAAAGATAAAGAATCGATC-GGAATAACACCGTGAATCAAAATTAT
131 GTCAAAAGATAAAGAATCGATCAGG-ATAACACCGCGAATCAAAATTAT
8364547 ACCCAAAGAT
Statistics
Matches: 530, Mismatches: 81, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
218 9 0.02
219 89 0.17
220 431 0.81
221 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (220 bp):
CGATTGGGATAACATCGCAAGTCAAAAGATAAGGAATCAATCGGGATAACACCGCGAATCAAAAT
TATGCCCGAAGGTCTTAGAAATCATGTTCGAAGGTCTTACAGAATCGACTGGGATAACACCGCAA
GTCAAAAGATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCGGAGGTCTTAGAA
ATCATGCCCGAAGGTCTTACAGAAT
Found at i:8364343 original size:330 final size:329
Alignment explanation
Indices: 8363755--8364563 Score: 1084
Period size: 330 Copynumber: 2.5 Consensus size: 329
8363745 ATCGATTGAA
* * * * *
8363755 ATAACACCGTGAATCGAATTTATGCCCGGAGGTCTTAGAGATCATGCTTGGAA-GTTTTACAGAA
1 ATAACACCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGC-TCGAAGGTCTTACAGAA
* * * * * * *
8363819 TCGAC-AGGACAACACCGTAAGTCAAAAAATCAAGAATCGATCAGGATAATACCGCGAATCAAAT
65 TCGACTGGGATAACACCGTAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGTGAATCAAAA
* * * *
8363883 TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGATTCGATTGGGATAACATCGCA
129 TTATACCCGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACAGAATCGATTGGGATAACATCGCA
* * * *
8363948 AGTCAAAAGATCAAGAATCAATCGGGATAATACCGCGAATCAAAATTATGCCCGGAGGTCTTAAA
194 AGTCAAAAGATAAAGAATCAATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTAAA
** * * * * *
8364013 AATCATATTCGAAGGTCTTATAGAATCGACTGGGATAACACTGCAAGTTGAAAGATAAGGAATCG
259 AATCATACCCGAAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAGATAAGGAATCA
8364078 ATCAGG
324 ATCAGG
*
8364084 ATAACACCGCGAATCGAAATTATGCTCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
1 ATAACACCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* ** *
8364149 CGACTGGGATAACATCGCGAGTCAAAAGATAAGGAATCGATCGGGATAACATCGTGAATCAAAAT
66 CGACTGGGATAACACCGTAAGTCAAAAGATAA-GAATCGATCGGGATAACACCGTGAATCAAAAT
* * * *
8364214 TATACCTGAAGGTTTTAGAAATCATGTCCGAAGGTCTTACAGAATCGATTGGGATAATATCGCAA
130 TATACCCGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACAGAATCGATTGGGATAACATCGCAA
*
8364279 GTCAAAAGATAAAGAATCGATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTAAAA
195 GTCAAAAGATAAAGAATCAATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTAAAA
* * *
8364344 ATCATGCCCGAAGGTCTTACAGAATCGATTGGGACAACACCGCGAGTCGAAAGATAAGGAATCAA
260 ATCATACCCGAAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAGATAAGGAATCAA
*
8364409 TCGGG
325 TCAGG
* * * * * *
8364414 ATAACACCACGAATCAAAATTATCCCCGAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAAT
1 ATAACACCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
* * * *
8364479 CGACTGAGATAACACCATAAATCAAAAGATAAAGAATCGATCGGAATAACACCGTGAATCAAAAT
66 CGACTGGGATAACACCGTAAGTCAAAAGAT-AAGAATCGATCGGGATAACACCGTGAATCAAAAT
* *
8364544 TATACCCAAAGATCTT-GAAA
130 TATACCCGAAGGTCTTAGAAA
8364564 GTTGTGCTCG
Statistics
Matches: 416, Mismatches: 60, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
328 4 0.01
329 64 0.15
330 346 0.83
331 2 0.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (329 bp):
ATAACACCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAAT
CGACTGGGATAACACCGTAAGTCAAAAGATAAGAATCGATCGGGATAACACCGTGAATCAAAATT
ATACCCGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACAGAATCGATTGGGATAACATCGCAAG
TCAAAAGATAAAGAATCAATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTAAAAA
TCATACCCGAAGGTCTTACAGAATCGACTGGGACAACACCGCAAGTCGAAAGATAAGGAATCAAT
CAGG
Found at i:8364350 original size:22 final size:22
Alignment explanation
Indices: 8364319--8364362 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8364309 ACCACGAATC
*
8364319 AAAATTATGCCC-AGAGGTCTTA
1 AAAATCATGCCCGA-AGGTCTTA
8364341 AAAATCATGCCCGAAGGTCTTA
1 AAAATCATGCCCGAAGGTCTTA
8364363 CAGAATCGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (22 bp):
AAAATCATGCCCGAAGGTCTTA
Found at i:8364615 original size:23 final size:23
Alignment explanation
Indices: 8364589--8364657 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
8364579 CTAAGAGATT
*
8364589 ATGCCTAAAGGTCTTACAGAATC
1 ATGCCCAAAGGTCTTACAGAATC
**
8364612 ATGCCCGGAGGTCTTACAGAATC
1 ATGCCCAAAGGTCTTACAGAATC
** **
8364635 ATGTTCGGAGGTCTTACAGAATC
1 ATGCCCAAAGGTCTTACAGAATC
8364658 GACTGGGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
ATGCCCAAAGGTCTTACAGAATC
Found at i:8364737 original size:288 final size:285
Alignment explanation
Indices: 8364320--8364897 Score: 753
Period size: 288 Copynumber: 2.0 Consensus size: 285
8364310 CCACGAATCA
* *
8364320 AAATTATGCCCAGAGGTCTTAAAAATCATGCCCGAAGGTCTTACAGAATCGATTGGGACAACACC
1 AAATCATGCCCAGAGGTCTTAAAAATCATGCCCGAAGGTCTTACAGAATCGACTGGGACAACACC
* *
8364385 GCGAGTCGAAAGATAAGGAATCAATCGGGATAACACCACGAATCAAAATTATCCCCGAAGGTCTT
66 ACGAGTCGAAAGATAAGGAATCAATCGAGATAACACCACGAATCAAAATTATCCCCGAAGGTCTT
* * * *
8364450 AGAAATCATGTTCGGAGGTCTTACAGAATCGACTGAGATAACACCATAAATCAAAAGATAAAGAA
131 AGAAATCATGTCCGAAGATCTTACAGAATCGACTGAGATAACACCATAAATCAAAAAATAAAGAA
** * **
8364515 TCGATCG-GAATAACACCGTGAATCAAAATTATACCCAAAGATCTTGAAAGTTGTGCTCGGTTGT
196 TCGATCGAG-ATAACACCACGAATCAAAATTATACCC-AAGATCTTGAAAGTTGTACTCGGAGGT
8364579 CTAAGAGATTATGCCTAAAGGTCTTAC
259 CTAAGAGATTATGCCTAAAGGTCTTAC
* * ** * *
8364606 AGAATCATGCCCGGAGGTCTTACAGAATCATGTTCGGAGGTCTTACAGAATCGACTGGGATAACA
1 A-AATCATGCCCAGAGGTCTTA-AAAATCATGCCCGAAGGTCTTACAGAATCGACTGGGACAACA
* * * * ** ** * *
8364671 TCACGAGTTGAATGATAAGGAATCGATCGAGATAACACCGTGAATCAAAATTATGTCTGGAGGTC
64 CCACGAGTCGAAAGATAAGGAATCAATCGAGATAACACCACGAATCAAAATTATCCCCGAAGGTC
* * *
8364736 TTAGAAATCATGTCCGAAGATCTTACAGAATCGACTGGGATAACACCGTAATTCAAAAAATAAAG
129 TTAGAAATCATGTCCGAAGATCTTACAGAATCGACTGAGATAACACCATAAATCAAAAAATAAAG
* * * * *
8364801 AATCGATCGAGATAACACCACGAATCAAAATTATGCCCGAGGTTTTTAAAGTTGTACTCGGAGGT
194 AATCGATCGAGATAACACCACGAATCAAAATTATACCCAAGATCTTGAAAGTTGTACTCGGAGGT
* **
8364866 CTTAGAGATTATGCCTGGAGGTCTTAC
259 CTAAGAGATTATGCCTAAAGGTCTTAC
8364893 AAATC
1 AAATC
8364898 TCGAAATCTT
Statistics
Matches: 249, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
286 5 0.02
287 63 0.25
288 180 0.72
289 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (285 bp):
AAATCATGCCCAGAGGTCTTAAAAATCATGCCCGAAGGTCTTACAGAATCGACTGGGACAACACC
ACGAGTCGAAAGATAAGGAATCAATCGAGATAACACCACGAATCAAAATTATCCCCGAAGGTCTT
AGAAATCATGTCCGAAGATCTTACAGAATCGACTGAGATAACACCATAAATCAAAAAATAAAGAA
TCGATCGAGATAACACCACGAATCAAAATTATACCCAAGATCTTGAAAGTTGTACTCGGAGGTCT
AAGAGATTATGCCTAAAGGTCTTAC
Found at i:8364826 original size:110 final size:111
Alignment explanation
Indices: 8364618--8364835 Score: 298
Period size: 110 Copynumber: 2.0 Consensus size: 111
8364608 AATCATGCCC
* * * * *
8364618 GGAGGTCTTACAGAATCATGTTCGGAGGTCTTACAGAATCGACTGGGATAACATCACGAGTTGAA
1 GGAGGTCTTACAGAATCATGTCCGAAGATCTTACAGAATCGACTGGGATAACATCACGAATTAAA
** * **
8364683 TGATAAGGAATCGATCGAGATAACACCGTGAATCAAAATTATGTCT
66 AAATAAAGAATCGATCGAGATAACACCACGAATCAAAATTATGTCT
*
8364729 GGAGGTCTTAGA-AATCATGTCCGAAGATCTTACAGAATCGACTGGGATAACA-C-CGTAATTCA
1 GGAGGTCTTACAGAATCATGTCCGAAGATCTTACAGAATCGACTGGGATAACATCACG-AATT-A
8364791 AAAAATAAAGAATCGATCGAGATAACACCACGAATCAAAATTATG
64 AAAAATAAAGAATCGATCGAGATAACACCACGAATCAAAATTATG
8364836 CCCGAGGTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
108 2 0.02
109 4 0.04
110 77 0.82
111 11 0.12
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (111 bp):
GGAGGTCTTACAGAATCATGTCCGAAGATCTTACAGAATCGACTGGGATAACATCACGAATTAAA
AAATAAAGAATCGATCGAGATAACACCACGAATCAAAATTATGTCT
Found at i:8370295 original size:13 final size:13
Alignment explanation
Indices: 8370277--8370301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8370267 AAGATGAAAC
8370277 AAAATATGAAAAA
1 AAAATATGAAAAA
8370290 AAAATATGAAAA
1 AAAATATGAAAA
8370302 GGAAAAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAATATGAAAAA
Found at i:8371587 original size:24 final size:23
Alignment explanation
Indices: 8371532--8371585 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 23
8371522 TTTTCTTTTG
8371532 TATTTTATGTATTCTATTATTAT
1 TATTTTATGTATTCTATTATTAT
8371555 TATTATTATGTATATCT-TTATTCATT
1 TATT-TTATGTAT-TCTATTATT-A-T
8371581 TATTT
1 TATTT
8371586 ATTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 4 0.15
24 13 0.48
25 5 0.19
26 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TATTTTATGTATTCTATTATTAT
Found at i:8371644 original size:3 final size:3
Alignment explanation
Indices: 8371636--8371661 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8371626 AGTTATATAT
8371636 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
8371662 TTTGTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8372139 original size:24 final size:23
Alignment explanation
Indices: 8372095--8372139 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
8372085 TTATCAGAAA
* *
8372095 TTTTTTGGGGATTTTTCGAAATT
1 TTTTTTGGGAATTTCTCGAAATT
*
8372118 TTTTTCTGGGAATTTCTGGAAA
1 TTTTT-TGGGAATTTCTCGAAA
8372140 ATTCCAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.20, C:0.07, G:0.22, T:0.51
Consensus pattern (23 bp):
TTTTTTGGGAATTTCTCGAAATT
Found at i:8372255 original size:20 final size:20
Alignment explanation
Indices: 8372232--8372274 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8372222 TGCCCAGTTT
*
8372232 CCGGCGAAGTATCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
8372252 CCGGCGAAGAATCCCAGAAA
1 CCGGCGAAGAATCCCAGAAA
8372272 CCG
1 CCG
8372275 TCAAATTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.33, G:0.26, T:0.07
Consensus pattern (20 bp):
CCGGCGAAGAATCCCAGAAA
Found at i:8372336 original size:20 final size:20
Alignment explanation
Indices: 8372293--8372337 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8372283 CCGGCCAACT
*
8372293 TCCGGCGAAAAAACCCAGAT
1 TCCGGCGAAAAAACCCAGAA
***
8372313 TCCGGCGAAAATTTCCAGAA
1 TCCGGCGAAAAAACCCAGAA
8372333 TCCGG
1 TCCGG
8372338 TGAATCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (20 bp):
TCCGGCGAAAAAACCCAGAA
Found at i:8372691 original size:14 final size:14
Alignment explanation
Indices: 8372692--8372732 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
8372682 TGAATTTTTT
8372692 TTTTTTTTTTTGAA
1 TTTTTTTTTTTGAA
8372706 TTTTTTTTTTTGAA
1 TTTTTTTTTTTGAA
*
8372720 TTTTTTTTATTGA
1 TTTTTTTTTTTGA
8372733 CTTTGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (14 bp):
TTTTTTTTTTTGAA
Found at i:8372697 original size:20 final size:20
Alignment explanation
Indices: 8372672--8372716 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
8372662 CCGCTCCAGG
8372672 TTTTTTTTTTTGAATTTTTT
1 TTTTTTTTTTTGAATTTTTT
8372692 TTTTTTTTTTTGAATTTTTT
1 TTTTTTTTTTTGAATTTTTT
8372712 TTTTT
1 TTTTT
8372717 GAATTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.09, C:0.00, G:0.04, T:0.87
Consensus pattern (20 bp):
TTTTTTTTTTTGAATTTTTT
Found at i:8372738 original size:34 final size:33
Alignment explanation
Indices: 8372672--8372742 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
8372662 CCGCTCCAGG
* ***
8372672 TTTTTTTTTTTGAATTTTTTTTTTTTTTTTTGAA
1 TTTTTTTTTTTGAATTTTTTTTATTGACTTTG-A
8372706 TTTTTTTTTTTGAATTTTTTTTATTGACTTTGA
1 TTTTTTTTTTTGAATTTTTTTTATTGACTTTGA
8372739 TTTT
1 TTTT
8372743 GATCTTGATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.13, C:0.01, G:0.07, T:0.79
Consensus pattern (33 bp):
TTTTTTTTTTTGAATTTTTTTTATTGACTTTGA
Found at i:8373144 original size:156 final size:156
Alignment explanation
Indices: 8372764--8373381 Score: 1046
Period size: 156 Copynumber: 3.9 Consensus size: 156
8372754 TTTTTTTTCT
* *
8372764 TTTTTCTTT-AATCAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATAC
1 TTTTTCTTTAAAT-AATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATAC
* *
8372828 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAATTTC
64 TCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
* * *
8372893 CGATAATTAATTACTTGGCTGATTTTGAA
129 CGATAATTAATTAATTGGTTGATCTTG-A
*
8372922 TTTTTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCAT
1 ----TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCAT
8372987 ACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATT
62 ACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATT
8373052 TTCGATAATTAATTAATTGGTTGATCTTGA
127 TTCGATAATTAATTAATTGGTTGATCTTGA
8373082 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
8373147 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
8373212 ATAATTAATTAATTGGTTGATCTTGA
131 ATAATTAATTAATTGGTTGATCTTGA
8373238 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
8373303 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAG-ATAA-TTTCA
66 CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
*
8373366 ATAA-TAATTACTTGGT
131 ATAATTAATTAATTGGT
8373382 AAAATTTTAA
Statistics
Matches: 443, Mismatches: 12, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
153 11 0.02
154 8 0.02
155 4 0.01
156 273 0.62
160 1 0.00
161 110 0.25
162 34 0.08
163 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (156 bp):
TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
CTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCG
ATAATTAATTAATTGGTTGATCTTGA
Found at i:8374455 original size:16 final size:15
Alignment explanation
Indices: 8374372--8374525 Score: 110
Period size: 16 Copynumber: 10.5 Consensus size: 15
8374362 ATATGAAAGG
8374372 TTTAGGGTTTT-GAT
1 TTTAGGGTTTTGGAT
* *
8374386 TTTAGAGTTTGGAGAT
1 TTTAGGGTTTTG-GAT
*
8374402 TTTAGGG-TTTGGGT
1 TTTAGGGTTTTGGAT
*
8374416 TTT-GTGGTTTAGGA-
1 TTTAG-GGTTTTGGAT
8374430 ---AGGG-TTTGGAT
1 TTTAGGGTTTTGGAT
8374441 TTTAGGGATTTTGGAT
1 TTTAGGG-TTTTGGAT
*
8374457 TTT-GGGGTTTGGAT
1 TTTAGGGTTTTGGAT
*
8374471 TTTAGGGGTTTCGGAT
1 TTTA-GGGTTTTGGAT
*
8374487 TTTAGGGGTTTGGAT
1 TTTAGGGTTTTGGAT
* *
8374502 TTAAGGGATTTTAGATT
1 TTTAGGG-TTTTGGA-T
8374519 TTTAGGG
1 TTTAGGG
8374526 GTTTCGAATT
Statistics
Matches: 108, Mismatches: 17, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
10 5 0.05
11 2 0.02
12 1 0.01
13 1 0.01
14 30 0.28
15 25 0.23
16 37 0.34
17 7 0.06
ACGTcount: A:0.16, C:0.01, G:0.36, T:0.47
Consensus pattern (15 bp):
TTTAGGGTTTTGGAT
Found at i:8374498 original size:31 final size:31
Alignment explanation
Indices: 8374431--8374538 Score: 146
Period size: 30 Copynumber: 3.5 Consensus size: 31
8374421 GGTTTAGGAA
8374431 GGGTTTGGATTTTAGGGATTTTGGATTTT-G
1 GGGTTTGGATTTTAGGGATTTTGGATTTTAG
* *
8374461 GGGTTTGGATTTTAGGGGTTTCGGATTTTAG
1 GGGTTTGGATTTTAGGGATTTTGGATTTTAG
* *
8374492 GGGTTTGGATTTAAGGGATTTTAGATTTTTAG
1 GGGTTTGGATTTTAGGGATTTTGGA-TTTTAG
*
8374524 GGGTTTCGAATTTTA
1 GGGTTT-GGATTTTA
8374539 AGAGTTTTAG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
30 27 0.40
31 22 0.33
32 12 0.18
33 6 0.09
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (31 bp):
GGGTTTGGATTTTAGGGATTTTGGATTTTAG
Found at i:8374538 original size:16 final size:15
Alignment explanation
Indices: 8374431--8374529 Score: 119
Period size: 16 Copynumber: 6.4 Consensus size: 15
8374421 GGTTTAGGAA
8374431 GGGTTTGGATTTTAG
1 GGGTTTGGATTTTAG
*
8374446 GGATTTTGGATTTT-G
1 GG-GTTTGGATTTTAG
8374461 GGGTTTGGATTTTAG
1 GGGTTTGGATTTTAG
8374476 GGGTTTCGGATTTTAG
1 GGGTTT-GGATTTTAG
*
8374492 GGGTTTGGATTTAAG
1 GGGTTTGGATTTTAG
* *
8374507 GGATTTTAGATTTTTAG
1 GG-GTTTGGA-TTTTAG
8374524 GGGTTT
1 GGGTTT
8374530 CGAATTTTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
14 10 0.14
15 22 0.31
16 33 0.46
17 7 0.10
ACGTcount: A:0.15, C:0.01, G:0.36, T:0.47
Consensus pattern (15 bp):
GGGTTTGGATTTTAG
Found at i:8375601 original size:14 final size:14
Alignment explanation
Indices: 8375578--8375613 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
8375568 CTGTGTCTTT
*
8375578 TTTTTTTGTTTCTG
1 TTTTTATGTTTCTG
8375592 TTTTTATGTTTCTG
1 TTTTTATGTTTCTG
8375606 TTTTTATG
1 TTTTTATG
8375614 GTTGGTGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.06, G:0.14, T:0.75
Consensus pattern (14 bp):
TTTTTATGTTTCTG
Found at i:8375950 original size:3 final size:3
Alignment explanation
Indices: 8375944--8375976 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8375934 ATTTATTTAT
8375944 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8375977 ATTTCAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8379373 original size:28 final size:29
Alignment explanation
Indices: 8379342--8379402 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
8379332 CAAATGACCA
* *
8379342 ATTTTGAT-ACACTAAA-TAAATTTTAGTG
1 ATTTTAATGACAC-AAATTAAAGTTTAGTG
*
8379370 ATTTTAATGAGACAAATTAAAGTTTAGTG
1 ATTTTAATGACACAAATTAAAGTTTAGTG
8379399 ATTT
1 ATTT
8379403 GGATGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43
Consensus pattern (29 bp):
ATTTTAATGACACAAATTAAAGTTTAGTG
Found at i:8381422 original size:33 final size:33
Alignment explanation
Indices: 8381380--8381445 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
8381370 CTATTTTGTT
*
8381380 TTGCTTCTTTATTTTCCCTA-AAAGTCTTATTGC
1 TTGCTTCTTTATTTTCCC-AGAAAATCTTATTGC
*
8381413 TTGCTTCTTTATTTTGCCAGAAAATCTTATTGC
1 TTGCTTCTTTATTTTCCCAGAAAATCTTATTGC
8381446 CCTAGCCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.50
Consensus pattern (33 bp):
TTGCTTCTTTATTTTCCCAGAAAATCTTATTGC
Found at i:8382295 original size:21 final size:21
Alignment explanation
Indices: 8382269--8382309 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8382259 TCTCAAACTT
8382269 ATTCAAAAACCATCATATATC
1 ATTCAAAAACCATCATATATC
*
8382290 ATTCAAAAACTATCATATAT
1 ATTCAAAAACCATCATATAT
8382310 GAATGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCAAAAACCATCATATATC
Found at i:8391076 original size:13 final size:13
Alignment explanation
Indices: 8391058--8391113 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
8391048 TAAACATTTT
8391058 AAACCTTAAATCA
1 AAACCTTAAATCA
*
8391071 AAACCTTAAATCCC
1 AAACCTTAAAT-CA
*
8391085 AAACTCTAAAATCA
1 AAAC-CTTAAATCA
*
8391099 AAACCCTAAATCA
1 AAACCTTAAATCA
8391112 AA
1 AA
8391114 CCCTAAACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 20 0.56
14 10 0.28
15 6 0.17
ACGTcount: A:0.54, C:0.27, G:0.00, T:0.20
Consensus pattern (13 bp):
AAACCTTAAATCA
Found at i:8391078 original size:29 final size:30
Alignment explanation
Indices: 8390998--8391193 Score: 106
Period size: 29 Copynumber: 6.6 Consensus size: 30
8390988 AAAACCCTCC
* *
8390998 AAACACTAAAA-CTAAAACCTTAAACCCTTT
1 AAACCCTAAAATC-AAAACCTTAAACACTTT
* *
8391028 AAACCCTAAAATCAAAATCTTAAACATTTT
1 AAACCCTAAAATCAAAACCTTAAACACTTT
* *
8391058 AAA-CCTTAAATCAAAACCTTAAATC-C--C
1 AAACCCTAAAATCAAAACCTTAAA-CACTTT
* * **
8391085 AAACTCTAAAATCAAAACCCTAAATCAAACCCT
1 AAACCCTAAAATCAAAACCTTAAA-C--ACTTT
**
8391118 AAACCCTAAAA-CTAAAACCTTAAAC-CTCC
1 AAACCCTAAAATC-AAAACCTTAAACACTTT
* *
8391147 AAA-TC-AAAATACTAAAACCCTAAAC-CTTTT
1 AAACCCTAAAAT-C-AAAACCTTAAACAC-TTT
*
8391177 AAACCATAAAATCAAAA
1 AAACCCTAAAATCAAAA
8391194 TCCTAAAATA
Statistics
Matches: 130, Mismatches: 22, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
27 7 0.05
28 20 0.15
29 37 0.28
30 36 0.28
31 3 0.02
32 7 0.05
33 20 0.15
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.22
Consensus pattern (30 bp):
AAACCCTAAAATCAAAACCTTAAACACTTT
Found at i:8391102 original size:14 final size:12
Alignment explanation
Indices: 8391058--8391120 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 12
8391048 TAAACATTTT
8391058 AAACCTTAAATCA
1 AAACC-TAAATCA
*
8391071 AAACCTTAAATCCC
1 AAACC-TAAAT-CA
8391085 AAACTCTAAAATCA
1 AAAC-CT-AAATCA
8391099 AAACCCTAAATCA
1 AAA-CCTAAATCA
*
8391112 AACCCTAAA
1 AAACCTAAA
8391121 CCCTAAAACT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 6 0.14
13 19 0.44
14 12 0.28
15 6 0.14
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (12 bp):
AAACCTAAATCA
Found at i:8391155 original size:21 final size:20
Alignment explanation
Indices: 8391065--8391155 Score: 60
Period size: 21 Copynumber: 4.5 Consensus size: 20
8391055 TTTAAACCTT
* *
8391065 AAATCAAAACCTTAAATCCC
1 AAATCAAAACCCTAAACCCC
* * *
8391085 AAACTCTAAAA-TCAAAACCCT
1 AAA-TC-AAAACCCTAAACCCC
*
8391106 AAATC-AAACCCTAAACCCT
1 AAATCAAAACCCTAAACCCC
* *
8391125 AAAACTAAAACCTTAAACCTCC
1 AAATC-AAAACCCTAAACC-CC
8391147 AAATCAAAA
1 AAATCAAAA
8391156 TACTAAAACC
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
18 3 0.06
19 12 0.22
20 5 0.09
21 25 0.46
22 9 0.17
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.18
Consensus pattern (20 bp):
AAATCAAAACCCTAAACCCC
Found at i:8391202 original size:14 final size:14
Alignment explanation
Indices: 8391177--8391274 Score: 88
Period size: 14 Copynumber: 6.8 Consensus size: 14
8391167 TAAACCTTTT
*
8391177 AAACCATAAAATCA
1 AAACCCTAAAATCA
* *
8391191 AAATCCTAAAATAA
1 AAACCCTAAAATCA
*
8391205 AAACCCTAAAAACTGA
1 AAACCCT-AAAA-TCA
8391221 AAACCCTAAAATCA
1 AAACCCTAAAATCA
* *
8391235 AAACCCTAAAACCTT
1 AAACCCTAAAATC-A
* *
8391250 AAACCCTCAAATTA
1 AAACCCTAAAATCA
*
8391264 AAAGCCTAAAA
1 AAACCCTAAAA
8391275 CCCTAAACCT
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
14 40 0.60
15 18 0.27
16 9 0.13
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.16
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:8391215 original size:8 final size:8
Alignment explanation
Indices: 8391204--8391281 Score: 51
Period size: 8 Copynumber: 10.4 Consensus size: 8
8391194 TCCTAAAATA
8391204 AAAACCCT
1 AAAACCCT
*
8391212 AAAA-ACT
1 AAAACCCT
8391219 GAAAACCCT
1 -AAAACCCT
*
8391228 AAAA-TC-
1 AAAACCCT
8391234 AAAACCCT
1 AAAACCCT
8391242 AAAA-CCT
1 AAAACCCT
*
8391249 TAAACCCT
1 AAAACCCT
* *
8391257 CAAA--TT
1 AAAACCCT
*
8391263 AAAAGCCT
1 AAAACCCT
8391271 AAAACCCT
1 AAAACCCT
8391279 AAA
1 AAA
8391282 CCTCAAAAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
6 8 0.15
7 10 0.19
8 33 0.62
9 2 0.04
ACGTcount: A:0.54, C:0.28, G:0.03, T:0.15
Consensus pattern (8 bp):
AAAACCCT
Found at i:8391229 original size:30 final size:29
Alignment explanation
Indices: 8391177--8391274 Score: 99
Period size: 30 Copynumber: 3.4 Consensus size: 29
8391167 TAAACCTTTT
* * *
8391177 AAACCATAAAATC-AAAATCCTAAAATAA
1 AAACCCTAAAAACTAAAACCCTAAAATAA
*
8391205 AAACCCTAAAAACTGAAAACCCTAAAATCA
1 AAACCCTAAAAACT-AAAACCCTAAAATAA
* * * *
8391235 AAACCCTAAAACCTTAAACCCTCAAATTA
1 AAACCCTAAAAACTAAAACCCTAAAATAA
*
8391264 AAAGCCTAAAA
1 AAACCCTAAAA
8391275 CCCTAAACCT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 11 0.19
29 22 0.37
30 26 0.44
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.16
Consensus pattern (29 bp):
AAACCCTAAAAACTAAAACCCTAAAATAA
Found at i:8391255 original size:29 final size:29
Alignment explanation
Indices: 8391195--8391283 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
8391185 AAATCAAAAT
* *
8391195 CCTAAAATAAAAACCCTAAAAACTGAAAAC
1 CCTAAAATAAAAACCCTAAAACCT-TAAAC
*
8391225 CCTAAAATCAAAACCCTAAAACCTTAAAC
1 CCTAAAATAAAAACCCTAAAACCTTAAAC
* * * *
8391254 CCTCAAATTAAAAGCCTAAAACCCTAAAC
1 CCTAAAATAAAAACCCTAAAACCTTAAAC
8391283 C
1 C
8391284 TCAAAAAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
29 30 0.58
30 22 0.42
ACGTcount: A:0.53, C:0.29, G:0.02, T:0.16
Consensus pattern (29 bp):
CCTAAAATAAAAACCCTAAAACCTTAAAC
Found at i:8395086 original size:7 final size:7
Alignment explanation
Indices: 8395054--8395085 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8395044 GCGACGTGGG
8395054 TTTTGGT
1 TTTTGGT
8395061 TTTTGGT
1 TTTTGGT
8395068 TTTTGGT
1 TTTTGGT
*
8395075 TTTTTGT
1 TTTTGGT
8395082 TTTT
1 TTTT
8395086 TTTTTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (7 bp):
TTTTGGT
Found at i:8395094 original size:15 final size:15
Alignment explanation
Indices: 8395054--8395086 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8395044 GCGACGTGGG
*
8395054 TTTTGG-TTTTTGGT
1 TTTTGGTTTTTTGTT
8395068 TTTTGGTTTTTTGTT
1 TTTTGGTTTTTTGTT
8395083 TTTT
1 TTTT
8395087 TTTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (15 bp):
TTTTGGTTTTTTGTT
Found at i:8398426 original size:13 final size:13
Alignment explanation
Indices: 8398408--8398440 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8398398 AAATGTTGTC
8398408 TATTATAAAAATA
1 TATTATAAAAATA
*
8398421 TATTATGAAAATA
1 TATTATAAAAATA
8398434 -ATTATAA
1 TATTATAA
8398441 TATATTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
TATTATAAAAATA
Found at i:8398804 original size:17 final size:19
Alignment explanation
Indices: 8398784--8398856 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 19
8398774 TTAAAAAAAT
8398784 ATAAAT-TAT-CATGTTAA
1 ATAAATATATACATGTTAA
*
8398801 ATAAACTATTTACATGTTAA
1 ATAAA-TATATACATGTTAA
*
8398821 ATAAATAAATA-AT-TTAA
1 ATAAATATATACATGTTAA
8398838 ATATAATTATATATCATGT
1 ATA-AA-TATATA-CATGT
8398857 GTTATTCACA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
17 12 0.27
18 5 0.11
19 11 0.25
20 13 0.30
21 2 0.05
22 1 0.02
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41
Consensus pattern (19 bp):
ATAAATATATACATGTTAA
Found at i:8403491 original size:28 final size:28
Alignment explanation
Indices: 8403459--8403514 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8403449 TATCTGATTC
* *
8403459 CTATGTCTTGAGTGTTTTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8403487 CTATGTCTTGAGTATTGTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8403515 TTTAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (28 bp):
CTATGTCTTGAGTATTGTTCATTAGTAA
Found at i:8405037 original size:17 final size:17
Alignment explanation
Indices: 8405015--8405058 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
8405005 TTGAAGGTTT
8405015 GGTTTTAAGGTTCAGAG
1 GGTTTTAAGGTTCAGAG
8405032 GGTTTTAAGGTTCAGAG
1 GGTTTTAAGGTTCAGAG
8405049 GGTTTTAAGG
1 GGTTTTAAGG
8405059 CTTGAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.23, C:0.05, G:0.36, T:0.36
Consensus pattern (17 bp):
GGTTTTAAGGTTCAGAG
Found at i:8405126 original size:37 final size:35
Alignment explanation
Indices: 8405080--8405152 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 35
8405070 GGATATAGAA
*
8405080 GTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAGG
1 GTTTAGGGTTTTGATTTAAGAGTTT-G-GATTTTAGG
* * *
8405117 GTTTGGGGTTTTTATTTAAGGGTTTGGATTTTAGG
1 GTTTAGGGTTTTGATTTAAGAGTTTGGATTTTAGG
8405152 G
1 G
8405153 ATTTTGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 10 0.31
36 1 0.03
37 21 0.66
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (35 bp):
GTTTAGGGTTTTGATTTAAGAGTTTGGATTTTAGG
Found at i:8405130 original size:16 final size:16
Alignment explanation
Indices: 8405092--8405122 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8405082 TTAGGGTTTT
8405092 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8405108 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8405123 GGTTTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8405163 original size:16 final size:15
Alignment explanation
Indices: 8405130--8405265 Score: 109
Period size: 16 Copynumber: 8.9 Consensus size: 15
8405120 TGGGGTTTTT
*
8405130 ATTTAAGGG-TTTGG
1 ATTTTAGGGTTTTGG
*
8405144 ATTTTAGGGATTTTGA
1 ATTTTAGGG-TTTTGG
*
8405160 ATTTT-GGGGTTTGG
1 ATTTTAGGGTTTTGG
8405174 ATTTTAGGGGTTTTGG
1 ATTTTA-GGGTTTTGG
*
8405190 ATTTTAGTCG-TTTGG
1 ATTTTAG-GGTTTTGG
*
8405205 A-TTTAGGGGATTTTAG
1 ATTTTA-GGG-TTTTGG
**
8405221 ATTTTTAGGGTTTCAG
1 A-TTTTAGGGTTTTGG
*
8405237 ATTTTAGGATTTTGG
1 ATTTTAGGGTTTTGG
8405252 ATTTTAGGAGTTTT
1 ATTTTAGG-GTTTT
8405266 AGAAACCTAT
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
14 22 0.22
15 30 0.31
16 39 0.40
17 3 0.03
18 4 0.04
ACGTcount: A:0.18, C:0.01, G:0.30, T:0.50
Consensus pattern (15 bp):
ATTTTAGGGTTTTGG
Done.