Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 36 of 138
Found at i:8405185 original size:15 final size:15
Alignment explanation
Indices: 8405131--8405264 Score: 103
Period size: 15 Copynumber: 8.7 Consensus size: 15
8405121 GGGGTTTTTA
*
8405131 TTTAAGGGTTTGGAT
1 TTTAGGGGTTTGGAT
* *
8405146 TTTAGGGATTTTGAAT
1 TTTAGGG-GTTTGGAT
8405162 TTT-GGGGTTTGGAT
1 TTTAGGGGTTTGGAT
8405176 TTTAGGGGTTTTGGAT
1 TTTAGGGG-TTTGGAT
**
8405192 TTTAGTCGTTTGGA-
1 TTTAGGGGTTTGGAT
*
8405206 TTTAGGGGATTTTAGATT
1 TTTAGGGG--TTTGGA-T
*
8405224 TTTA-GGGTTTCAGAT
1 TTTAGGGGTTT-GGAT
**
8405239 TTTAGGATTTTGGAT
1 TTTAGGGGTTTGGAT
*
8405254 TTTAGGAGTTT
1 TTTAGGGGTTT
8405265 TAGAAACCTA
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
14 15 0.16
15 40 0.42
16 34 0.35
17 3 0.03
18 4 0.04
ACGTcount: A:0.18, C:0.01, G:0.31, T:0.50
Consensus pattern (15 bp):
TTTAGGGGTTTGGAT
Found at i:8405247 original size:8 final size:8
Alignment explanation
Indices: 8405212--8405267 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
8405202 TGGATTTAGG
8405212 GGATTTTA
1 GGATTTTA
8405220 -GATTTTTA
1 GGA-TTTTA
* *
8405228 GGGTTTCA
1 GGATTTTA
8405236 -GATTTTA
1 GGATTTTA
8405243 GGATTTT-
1 GGATTTTA
8405250 GGATTTTA
1 GGATTTTA
8405258 GGAGTTTTA
1 GGA-TTTTA
8405267 G
1 G
8405268 AAACCTATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
7 14 0.36
8 18 0.46
9 7 0.18
ACGTcount: A:0.21, C:0.02, G:0.27, T:0.50
Consensus pattern (8 bp):
GGATTTTA
Found at i:8405259 original size:30 final size:30
Alignment explanation
Indices: 8405130--8405264 Score: 148
Period size: 30 Copynumber: 4.4 Consensus size: 30
8405120 TGGGGTTTTT
* *
8405130 ATTTAAGGGTTTGGATTTTAGGGATTTTGA
1 ATTTTAGGGTTTGGATTTTAGGGATTTTGG
* *
8405160 ATTTTGGGGTTTGGATTTTAGGGGTTTTGG
1 ATTTTAGGGTTTGGATTTTAGGGATTTTGG
* *
8405190 ATTTTAGTCGTTTGGA-TTTAGGGGATTTTAG
1 ATTTTAG-GGTTTGGATTTTA-GGGATTTTGG
*
8405221 ATTTTTAGGGTTTCAGATTTTA-GGATTTTGG
1 A-TTTTAGGGTTT-GGATTTTAGGGATTTTGG
8405252 ATTTTAGGAGTTT
1 ATTTTAGG-GTTT
8405265 TAGAAACCTA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
30 43 0.49
31 33 0.38
32 8 0.09
33 4 0.05
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.50
Consensus pattern (30 bp):
ATTTTAGGGTTTGGATTTTAGGGATTTTGG
Found at i:8406656 original size:7 final size:7
Alignment explanation
Indices: 8406633--8406681 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
8406623 GCCACCCTAC
8406633 TTTCTAT
1 TTTCTAT
8406640 TTT-T-T
1 TTTCTAT
8406645 TTTCTAT
1 TTTCTAT
8406652 TTTCTAT
1 TTTCTAT
*
8406659 TTTCT-C
1 TTTCTAT
*
8406665 TTTCTTT
1 TTTCTAT
*
8406672 TTTTTAT
1 TTTCTAT
8406679 TTT
1 TTT
8406682 AATAATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 4 0.11
6 7 0.20
7 24 0.69
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTCTAT
Found at i:8406674 original size:20 final size:19
Alignment explanation
Indices: 8406633--8406681 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
8406623 GCCACCCTAC
*
8406633 TTTCTATTTTTTTTTCTAT
1 TTTCTATTTTTCTTTCTAT
*
8406652 TTTCTATTTTCTCTTTCTTT
1 TTTCTATTTT-TCTTTCTAT
*
8406672 TTTTTATTTT
1 TTTCTATTTT
8406682 AATAATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTCTATTTTTCTTTCTAT
Found at i:8407202 original size:95 final size:91
Alignment explanation
Indices: 8407039--8407394 Score: 334
Period size: 88 Copynumber: 3.9 Consensus size: 91
8407029 TGCCCGGAGG
* * * * * * *
8407039 TCTTAAAAATCATGCTTGTAGGTCTTATAGATTTGATTGGGATAACATTGCAAGTCAAAAGATCA
1 TCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGAT-A
8407104 AGAATCGATCGGGATAACACCACCTGAAGA
65 AGAATCGATCGGGATAACACCACC-G-A-A
* * * * *
8407134 TCTTAAAAATCATGCTCGGAGGTTTTACAGAATTGACTAGGATAACACCGCAAGTTGAAATATAA
1 TCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGAT-A
**
8407199 AGAATCGATTAGGATAACACCA-CGAA
65 AGAATCGATCGGGATAACACCACCGAA
* * * *
8407225 TC---AAAATTATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTCGAAAGATAA
1 TCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAA
*
8407287 GAAATCGATCGAGATAACACCA-CGAA
66 G-AATCGATCGGGATAACACCACCGAA
* * * * * * * *
8407313 TC---GAAATTATGC-CTAGAGGTTTTACAGAATTGATTGAGATAATATCGCAAGTCAAAAGATA
1 TCTTAAAAATCATGCTC-GGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATA
8407374 AGGAATCGATCGGGATAACAC
65 A-GAATCGATCGGGATAACAC
8407395 TGTGAATCGA
Statistics
Matches: 221, Mismatches: 37, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
87 4 0.02
88 138 0.62
89 1 0.00
91 3 0.01
92 1 0.00
93 1 0.00
94 1 0.00
95 72 0.33
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.24
Consensus pattern (91 bp):
TCTTAAAAATCATGCTCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAA
GAATCGATCGGGATAACACCACCGAA
Found at i:8407293 original size:88 final size:88
Alignment explanation
Indices: 8407139--8407424 Score: 297
Period size: 88 Copynumber: 3.2 Consensus size: 88
8407129 GAAGATCTTA
* * * * * * *
8407139 AAAATCATGCTCGGAGGTTTTACAGAATTGACTAGGATAACACCGCAAGTTGAAATATAA-AGAA
1 AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAAGA-AA
8407203 TCGATTAGGATAACACCACGAATC
65 TCGATTAGGATAACACCACGAATC
* *
8407227 AAAATTATGCCCGGAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTCGAAAGATAAGAAAT
1 AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAAGAAAT
*
8407292 CGA-TCGAGATAACACCACGAATC
66 CGATTAG-GATAACACCACGAATC
* ** * * * * * *
8407315 GAAATTATGCCTAGAGGTTTTACAGAATTGATTGAGATAATATCGCAAGTCAAAAGATAAGGAAT
1 AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAAGAAAT
** ***
8407380 CGATCGGGATAACACTGTGAATC
66 CGATTAGGATAACACCACGAATC
* * *
8407403 GAAATTATGCCTGAAGGTCTTA
1 AAAATTATGCCCGGAGGTCTTA
8407425 AAAATCATGT
Statistics
Matches: 166, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
87 2 0.01
88 162 0.98
89 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (88 bp):
AAAATTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACATCGCAAGTCGAAAGATAAGAAAT
CGATTAGGATAACACCACGAATC
Found at i:8407482 original size:110 final size:112
Alignment explanation
Indices: 8407328--8407542 Score: 299
Period size: 110 Copynumber: 1.9 Consensus size: 112
8407318 ATTATGCCTA
* * * * ** *
8407328 GAGGTTTTACAGAATTGATTGAGATAATATCGCAAGTCAAAAGATAAGGAATCGATCGGGATAAC
1 GAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCAAAAGATAAAAAATCGATCAGGATAAC
* * * * *
8407393 ACTGTGAATCGAAATTAT-GCCTGAAGGTCTTA-AAAATCATGTCCG
66 ACCGCGAATCAAAATTATACCCGGAAGGTCTTACAAAATCATGTCCG
*
8407438 GAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCGAAAGATAAAAAATCGATCAGGATAAC
1 GAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCAAAAGATAAAAAATCGATCAGGATAAC
8407503 ACCGCGAATCAAAATTATACCCGGAAGGTCTTACAAAATC
66 ACCGCGAATCAAAATTATACCCGGAAGGTCTTACAAAATC
8407543 GACTAGGATA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 72 0.80
111 12 0.13
112 6 0.07
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (112 bp):
GAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCAAAAGATAAAAAATCGATCAGGATAAC
ACCGCGAATCAAAATTATACCCGGAAGGTCTTACAAAATCATGTCCG
Found at i:8407544 original size:89 final size:88
Alignment explanation
Indices: 8407435--8407609 Score: 253
Period size: 89 Copynumber: 2.0 Consensus size: 88
8407425 AAAATCATGT
* * *
8407435 CCGGAGGTCTTACAGAATCGACT-GAGATAACATCGCAAGTCGAAAGATAAAAAATCGATCAGGA
1 CCGGAGGTCTTACAAAATCGACTAG-GATAACACCGCAAGTCAAAAGATAAAAAATCGATCAGGA
8407499 TAACACCGCGAATCAAAATTATAC
65 TAACACCGCGAATCAAAATTATAC
* ** *
8407523 CCGGAAGGTCTTACAAAATCGACTAGGATAACACCGTAAGTCAAAAGATAAGGAATCGATCGGGA
1 CCGG-AGGTCTTACAAAATCGACTAGGATAACACCGCAAGTCAAAAGATAAAAAATCGATCAGGA
*
8407588 TAACACCGTGAATCAAAATTAT
65 TAACACCGCGAATCAAAATTAT
8407610 GCCCCAAAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 4 0.05
89 72 0.94
90 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (88 bp):
CCGGAGGTCTTACAAAATCGACTAGGATAACACCGCAAGTCAAAAGATAAAAAATCGATCAGGAT
AACACCGCGAATCAAAATTATAC
Found at i:8407656 original size:22 final size:23
Alignment explanation
Indices: 8407631--8407697 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
8407621 TTGAAAGTTG
* * *
8407631 TGCTCGAAGGTCTTAGAG-ATTA
1 TGCTCGGAGGTCTTACAGAATCA
*
8407653 TGCTCGGAGATCTTACAGAATCA
1 TGCTCGGAGGTCTTACAGAATCA
* *
8407676 TGCCCGGAGGTCTTATAGAATC
1 TGCTCGGAGGTCTTACAGAATC
8407698 GACTGAGATA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 15 0.41
23 22 0.59
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (23 bp):
TGCTCGGAGGTCTTACAGAATCA
Found at i:8407831 original size:88 final size:88
Alignment explanation
Indices: 8407682--8407865 Score: 251
Period size: 88 Copynumber: 2.1 Consensus size: 88
8407672 ATCATGCCCG
* * * * * *
8407682 GAGGTCTTATAGAATCGACTGAGATAACATCGCGAGTCGAAAGATAAAGAATCGATCAGGATAAC
1 GAGGTCTTACAGAATCGACTGACATAACACCGCAAGTCAAAAAATAAAGAATCGATCAGGATAAC
8407747 ACCGCGAATCAAAATTATACCCA
66 ACCGCGAATCAAAATTATACCCA
* * *
8407770 GAGGTCTTACAGAATCGACTGACATAACACCGTAAGTTAAAAAATAAAGAATCGATTAGGATAAC
1 GAGGTCTTACAGAATCGACTGACATAACACCGCAAGTCAAAAAATAAAGAATCGATCAGGATAAC
* * * *
8407835 ATCGCGAATCGAAATTATGCCCG
66 ACCGCGAATCAAAATTATACCCA
8407858 GAGGTCTT
1 GAGGTCTT
8407866 GAAAGTTGTG
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 83 1.00
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (88 bp):
GAGGTCTTACAGAATCGACTGACATAACACCGCAAGTCAAAAAATAAAGAATCGATCAGGATAAC
ACCGCGAATCAAAATTATACCCA
Found at i:8407868 original size:243 final size:244
Alignment explanation
Indices: 8407427--8407876 Score: 715
Period size: 244 Copynumber: 1.8 Consensus size: 244
8407417 AGGTCTTAAA
*
8407427 AATCATGTCCGGAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCGAAAGATAAAAAATCG
1 AATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCGAAAGATAAAAAATCG
* *
8407492 ATCAGGATAACACCGCGAATCAAAATTATACCCGGAAGGTCTTACAAAATCGACTAGGATAACAC
66 ATCAGGATAACACCGCGAATCAAAATTATACCCAGAAGGTCTTACAAAATCGACTAGCATAACAC
* * * *
8407557 CGTAAGTCAAAAGATAAGGAATCGATCGGGATAACACCGTGAATCAAAATTATGCCCCAAAGTCT
131 CGTAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCCAAAGTCT
8407622 TGAAAGTTGTGCTCGAAGGTCTTAGAGATTATGCTCGGAGATCTTACAG
196 TGAAAGTTGTGCTCGAAGGTCTTAGAGATTATGCTCGGAGATCTTACAG
* * *
8407671 AATCATGCCCGGAGGTCTTATAGAATCGACTGAGATAACATCGCGAGTCGAAAGATAAAGAATCG
1 AATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCGAAAGATAAAAAATCG
*
8407736 ATCAGGATAACACCGCGAATCAAAATTATACCCAG-AGGTCTTACAGAATCGACT-GACATAACA
66 ATCAGGATAACACCGCGAATCAAAATTATACCCAGAAGGTCTTACAAAATCGACTAG-CATAACA
* * * * ** *
8407799 CCGTAAGTTAAAAAATAAAGAATCGATTAGGATAACATCGCGAATCGAAATTATGCCCGGAGGTC
130 CCGTAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCCAAAGTC
8407864 TTGAAAGTTGTGC
195 TTGAAAGTTGTGC
8407877 CCGGAGTCTT
Statistics
Matches: 187, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
242 1 0.01
243 91 0.49
244 95 0.51
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (244 bp):
AATCATGCCCGGAGGTCTTACAGAATCGACTGAGATAACATCGCAAGTCGAAAGATAAAAAATCG
ATCAGGATAACACCGCGAATCAAAATTATACCCAGAAGGTCTTACAAAATCGACTAGCATAACAC
CGTAAGTCAAAAAATAAAGAATCGATCAGGATAACACCGCGAATCAAAATTATGCCCCAAAGTCT
TGAAAGTTGTGCTCGAAGGTCTTAGAGATTATGCTCGGAGATCTTACAG
Found at i:8407869 original size:21 final size:21
Alignment explanation
Indices: 8407845--8407886 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8407835 ATCGCGAATC
8407845 GAAA-TTATGCCCGGAGGTCTT
1 GAAAGTTATGCCCGGA-GTCTT
*
8407866 GAAAGTTGTGCCCGGAGTCTT
1 GAAAGTTATGCCCGGAGTCTT
8407887 ACAAATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (21 bp):
GAAAGTTATGCCCGGAGTCTT
Found at i:8408421 original size:15 final size:15
Alignment explanation
Indices: 8408401--8408430 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8408391 TGTCTTTCTT
*
8408401 GTGATGCAGATGCAA
1 GTGATGCAAATGCAA
8408416 GTGATGCAAATGCAA
1 GTGATGCAAATGCAA
8408431 AGACTCTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (15 bp):
GTGATGCAAATGCAA
Found at i:8409872 original size:16 final size:15
Alignment explanation
Indices: 8409851--8409886 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8409841 TTTTTTCCTC
*
8409851 TTTTTTTTTACTTTT
1 TTTTTTTTTTCTTTT
*
8409866 TTTTTTTTTTGTTTT
1 TTTTTTTTTTCTTTT
8409881 TTTTTT
1 TTTTTT
8409887 GTATAATGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.03, G:0.03, T:0.92
Consensus pattern (15 bp):
TTTTTTTTTTCTTTT
Found at i:8415240 original size:16 final size:16
Alignment explanation
Indices: 8415219--8415329 Score: 90
Period size: 15 Copynumber: 7.1 Consensus size: 16
8415209 TAAAGGTTTG
8415219 GATTTTAGGGATTTTA
1 GATTTTAGGGATTTTA
* *
8415235 GATTTT-GGG-GTTTG
1 GATTTTAGGGATTTTA
*
8415249 GATTTTAGGG-GTTTA
1 GATTTTAGGGATTTTA
* *
8415264 GATTTTAAGGA-TTTG
1 GATTTTAGGGATTTTA
8415279 GA-TTTAGGGGATTTTA
1 GATTTTA-GGGATTTTA
* *
8415295 GATTTTTAGGGGTTTCA
1 GA-TTTTAGGGATTTTA
8415312 GATTTTA-GGAGTTTTA
1 GATTTTAGGGA-TTTTA
8415328 GA
1 GA
8415330 AACTTATGGT
Statistics
Matches: 77, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
14 13 0.17
15 29 0.38
16 22 0.29
17 9 0.12
18 4 0.05
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.47
Consensus pattern (16 bp):
GATTTTAGGGATTTTA
Found at i:8415247 original size:30 final size:31
Alignment explanation
Indices: 8415213--8415329 Score: 134
Period size: 30 Copynumber: 3.8 Consensus size: 31
8415203 TTAATTTAAA
8415213 GGTTTGGATTTTAGGGATTTTAGATTTT-GG
1 GGTTTGGATTTTAGGGATTTTAGATTTTAGG
* *
8415243 GGTTTGGATTTTAGGG-GTTTAGATTTTAAG
1 GGTTTGGATTTTAGGGATTTTAGATTTTAGG
*
8415273 GATTTGGA-TTTAGGGGATTTTAGATTTTTAGG
1 GGTTTGGATTTTA-GGGATTTTAGA-TTTTAGG
*
8415305 GGTTTCAGATTTTA-GGAGTTTTAGA
1 GGTTT-GGATTTTAGGGA-TTTTAGA
8415330 AACTTATGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
29 14 0.19
30 27 0.37
31 6 0.08
32 13 0.18
33 9 0.12
34 4 0.05
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.47
Consensus pattern (31 bp):
GGTTTGGATTTTAGGGATTTTAGATTTTAGG
Found at i:8415261 original size:15 final size:15
Alignment explanation
Indices: 8415213--8415325 Score: 104
Period size: 16 Copynumber: 7.3 Consensus size: 15
8415203 TTAATTTAAA
*
8415213 GGTTTGGATTTTAGG
1 GGTTTAGATTTTAGG
*
8415228 GATTTTAGATTTT-GG
1 G-GTTTAGATTTTAGG
*
8415243 GGTTTGGATTTTAGG
1 GGTTTAGATTTTAGG
*
8415258 GGTTTAGATTTTAAG
1 GGTTTAGATTTTAGG
* *
8415273 GATTTGGA-TTTAGG
1 GGTTTAGATTTTAGG
8415287 GGATTTTAGATTTTTAGG
1 GG--TTTAGA-TTTTAGG
8415305 GGTTTCAGATTTTAGG
1 GGTTT-AGATTTTAGG
*
8415321 AGTTT
1 GGTTT
8415326 TAGAAACTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
14 15 0.19
15 25 0.32
16 28 0.35
17 3 0.04
18 8 0.10
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (15 bp):
GGTTTAGATTTTAGG
Found at i:8416445 original size:19 final size:19
Alignment explanation
Indices: 8416417--8416454 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8416407 ACACCAACCA
8416417 CCCTACTTTCTATTTTTTT
1 CCCTACTTTCTATTTTTTT
* *
8416436 CCCTATTTTCTCTTTTTTT
1 CCCTACTTTCTATTTTTTT
8416455 TTAATAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.26, G:0.00, T:0.66
Consensus pattern (19 bp):
CCCTACTTTCTATTTTTTT
Found at i:8416494 original size:23 final size:20
Alignment explanation
Indices: 8416452--8416496 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
8416442 TTTCTCTTTT
*
8416452 TTTTTAATAATTAATAATTA
1 TTTTTAAAAATTAATAATTA
8416472 TTTTTAAAAATATATATATATTA
1 TTTTTAAAAAT-TA-ATA-ATTA
8416495 TT
1 TT
8416497 ATTATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 2 0.10
22 3 0.14
23 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTAAAAATTAATAATTA
Found at i:8416498 original size:3 final size:3
Alignment explanation
Indices: 8416490--8416521 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8416480 AATATATATA
*
8416490 TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8416522 ATTTTAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:8419238 original size:13 final size:12
Alignment explanation
Indices: 8419215--8419264 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
8419205 ACAAAATACG
8419215 AAATACAAAAAA
1 AAATACAAAAAA
*
8419227 AAATACCAAAAA
1 AAATACAAAAAA
* *
8419239 TAATACAAAATAC
1 AAATACAAAA-AA
8419252 AAA-ACAAAAAA
1 AAATACAAAAAA
8419263 AA
1 AA
8419265 TGAAAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
11 3 0.10
12 25 0.81
13 3 0.10
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (12 bp):
AAATACAAAAAA
Found at i:8419273 original size:18 final size:20
Alignment explanation
Indices: 8419252--8419303 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 20
8419242 TACAAAATAC
8419252 AAAACAAAAAAAATGAA-A-
1 AAAACAAAAAAAATGAACAG
* *
8419270 AAAATAAAAAAAAAGAACAG
1 AAAACAAAAAAAATGAACAG
*
8419290 AAGACAAAAAAAAT
1 AAAACAAAAAAAAT
8419304 TAAAGATGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 1 0.04
20 11 0.41
ACGTcount: A:0.81, C:0.06, G:0.08, T:0.06
Consensus pattern (20 bp):
AAAACAAAAAAAATGAACAG
Found at i:8420361 original size:22 final size:23
Alignment explanation
Indices: 8420335--8420377 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8420325 TTTTTTATGC
*
8420335 ATAAATGTTTAAAT-TTATTAGG
1 ATAAATATTTAAATGTTATTAGG
*
8420357 ATAAATATTTAATTGTTATTA
1 ATAAATATTTAAATGTTATTA
8420378 ACAATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
ATAAATATTTAAATGTTATTAGG
Found at i:8428229 original size:12 final size:11
Alignment explanation
Indices: 8428175--8428221 Score: 67
Period size: 12 Copynumber: 4.0 Consensus size: 11
8428165 GGCATTATAC
8428175 AAAAAAAAAGA
1 AAAAAAAAAGA
8428186 AACAAAAAAAGA
1 AA-AAAAAAAGA
8428198 ACAAAAAAAAGTA
1 A-AAAAAAAAG-A
8428211 AAAAAAAAAGA
1 AAAAAAAAAGA
8428222 GGAAAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.09
12 27 0.82
13 3 0.09
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:8428229 original size:24 final size:24
Alignment explanation
Indices: 8428176--8428221 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
8428166 GCATTATACA
8428176 AAAAAAAAGAAACAAAAAAAGAAC
1 AAAAAAAAGAAACAAAAAAAGAAC
8428200 AAAAAAAAGTAAA-AAAAAAAGA
1 AAAAAAAAG-AAACAAAAAAAGA
8428222 GGAAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.02
Consensus pattern (24 bp):
AAAAAAAAGAAACAAAAAAAGAAC
Found at i:8429656 original size:15 final size:15
Alignment explanation
Indices: 8429636--8429671 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8429626 AGAAGAGTCT
8429636 TTGCATTTACATCAC
1 TTGCATTTACATCAC
*
8429651 TTGCATTTGCATCAC
1 TTGCATTTACATCAC
8429666 TTGCAT
1 TTGCAT
8429672 CTGCATCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.42
Consensus pattern (15 bp):
TTGCATTTACATCAC
Found at i:8429676 original size:15 final size:15
Alignment explanation
Indices: 8429645--8429680 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
8429635 TTTGCATTTA
*
8429645 CATCACTTGCATTTG
1 CATCACTTGCATCTG
8429660 CATCACTTGCATCTG
1 CATCACTTGCATCTG
8429675 CATCAC
1 CATCAC
8429681 AAGAAAGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (15 bp):
CATCACTTGCATCTG
Found at i:8430351 original size:88 final size:88
Alignment explanation
Indices: 8430188--8430385 Score: 281
Period size: 88 Copynumber: 2.3 Consensus size: 88
8430178 AAGATTTTAA
* *
8430188 GATT-TGTAAGACCTCCGGGCATAATTTTGATTTGTGATGTTATCCTGATCGATTCTTTATTTTT
1 GATTCTGTAAGACCTCCGGGCATAATTTTGATTCGTGATGTTATCCTGATCGATTCTTTATCTTT
* * *
8430252 TAACTTACGATGTTATGTCAGTC
66 CAACTCACGATGTTATCTCAGTC
* * *
8430275 GATTCTGTAAGACCTCTGGGTATAATTTTGATTCGTGGTGTTATCCTGATCGATTCTTTATCTTT
1 GATTCTGTAAGACCTCCGGGCATAATTTTGATTCGTGATGTTATCCTGATCGATTCTTTATCTTT
* * *
8430340 CGACTCGCGATGTTATCTTAGTC
66 CAACTCACGATGTTATCTCAGTC
*
8430363 GATTCTATAAGACCTCCGGGCAT
1 GATTCTGTAAGACCTCCGGGCAT
8430386 GATTCTGTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 4 0.04
88 92 0.96
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.42
Consensus pattern (88 bp):
GATTCTGTAAGACCTCCGGGCATAATTTTGATTCGTGATGTTATCCTGATCGATTCTTTATCTTT
CAACTCACGATGTTATCTCAGTC
Found at i:8430396 original size:23 final size:23
Alignment explanation
Indices: 8430363--8430429 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
8430353 TATCTTAGTC
*
8430363 GATTCTATAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCGAGCAT
* *
8430386 GATTCTGTAAGATCTCCGAGCAT
1 GATTCTATAAGACCTCCGAGCAT
* * *
8430409 -AATCTCTAAGACCTTCGAGCA
1 GATTCTATAAGACCTCCGAGCA
8430430 CAACTTTCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 17 0.46
23 20 0.54
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (23 bp):
GATTCTATAAGACCTCCGAGCAT
Found at i:8430427 original size:22 final size:23
Alignment explanation
Indices: 8430370--8430429 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
8430360 GTCGATTCTA
* * *
8430370 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGAGCATGAATCTC
*
8430393 TAAGATCTCCGAGCAT-AATCTC
1 TAAGACCTCCGAGCATGAATCTC
*
8430415 TAAGACCTTCGAGCA
1 TAAGACCTCCGAGCA
8430430 CAACTTTCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 17 0.55
23 14 0.45
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (23 bp):
TAAGACCTCCGAGCATGAATCTC
Found at i:8430588 original size:88 final size:88
Alignment explanation
Indices: 8430447--8430634 Score: 270
Period size: 88 Copynumber: 2.1 Consensus size: 88
8430437 CAAGACTTTG
* *
8430447 GGGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTTGACTTACGGTGTTATC
1 GGGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTACGATGTTATC
*
8430512 -CTAGTCGATTTTGTAAGACCTCC
66 TC-AGTCGATTCTGTAAGACCTCC
* * * ** *
8430535 GGGTATAATTTTGATTCGCGGTGTTATCCTGATCGATTTTTTATCTTTCGACTTGCGATGTTATC
1 GGGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTACGATGTTATC
8430600 TCAGTCGATTCTGTAAGACCTCC
66 TCAGTCGATTCTGTAAGACCTCC
*
8430623 GGGCATGATTTT
1 GGGCATAATTTT
8430635 TAAGACCTTC
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 87 0.99
89 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.41
Consensus pattern (88 bp):
GGGCATAATTTTGATTCACGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTACGATGTTATC
TCAGTCGATTCTGTAAGACCTCC
Found at i:8430649 original size:22 final size:22
Alignment explanation
Indices: 8430613--8430655 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8430603 GTCGATTCTG
* *
8430613 TAAGACCTCCGGGCATGATTTT
1 TAAGACCTCCAGGCATAATTTT
*
8430635 TAAGACCTTCAGGCATAATTT
1 TAAGACCTCCAGGCATAATTT
8430656 CGATTCACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATTTT
Found at i:8430721 original size:110 final size:111
Alignment explanation
Indices: 8430518--8430731 Score: 286
Period size: 110 Copynumber: 1.9 Consensus size: 111
8430508 TATCCTAGTC
* * * * * * **
8430518 GATTTTGTAAGACCTCCGGGTATAATTTTGATTCGCGGTGTTATCCTGATCGATTTTTTATCTTT
1 GATTTTGTAAGACCTCCAGGCATAATTTCGATTCACAGTGTTATCCCGATCGATTCCTTATCTTT
* * * * *
8430583 CGACTTGCGATGTTATCTCAGTCGATTCTGTAAGACCTCCGGGCAT
66 CGACTTGCGATATTATCCCAATCAATTCTGTAAAACCTCCGGGCAT
*
8430629 GATTTT-TAAGACCTTCAGGCATAATTTCGATTCACAGTGTTATCCCGATCGATTCCTTATCTTT
1 GATTTTGTAAGACCTCCAGGCATAATTTCGATTCACAGTGTTATCCCGATCGATTCCTTATCTTT
*
8430693 TGACTTGCGATATTATCCCAATCAATTCTGTAAAACCTC
66 CGACTTGCGATATTATCCCAATCAATTCTGTAAAACCTC
8430732 TAGGCATAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
110 82 0.93
111 6 0.07
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (111 bp):
GATTTTGTAAGACCTCCAGGCATAATTTCGATTCACAGTGTTATCCCGATCGATTCCTTATCTTT
CGACTTGCGATATTATCCCAATCAATTCTGTAAAACCTCCGGGCAT
Found at i:8430882 original size:88 final size:88
Alignment explanation
Indices: 8430635--8431000 Score: 378
Period size: 88 Copynumber: 4.1 Consensus size: 88
8430625 GCATGATTTT
* *** *
8430635 TAAGACCTTCAGGCATAATTTCGATTCACAGTGTTATCCCGATCGATTCCTTATCTTTTGACTTG
1 TAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTG
*
8430700 CGATATTATCCCAATCAATTCTG
66 CGATGTTATCCCAATCAATTCTG
* * * *
8430723 TAAAACCTCTAGGCATAA-TTCGATTCGTGATGTTATCCCGATCGATTCCTTATCTTTCGACTCG
1 TAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTG
* *
8430787 CGATGTTATCCCAATCGATTTTG
66 CGATGTTATCCCAATCAATTCTG
* * * * * *
8430810 TAAGACCTCCGGGCATAATTTTGATTCGTGGTGTTATCCTGATCGATTCTTTATATTTCAACTTG
1 TAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTG
* *
8430875 CGGTGTTATCCCAGTCAATTCTG
66 CGATGTTATCCCAATCAATTCTG
* * * *
8430898 TAAGACCTCCTA-GCATGATTTTTAAGATCTTTAGGCGGTGTTATCCCGATCGATT-CTTGATCT
1 TAAGACCTCC-AGGCAT-A-ATTT-CGA---TT-CGTGGTGTTATCCCGATCGATTCCTT-ATCT
* * * *
8430961 TTTGACTTGCAATGTTATCCCAATCAAATCTA
57 TTCGACTTGCGATGTTATCCCAATCAATTCTG
8430993 TAAGACCT
1 TAAGACCT
8431001 ACAAGCATGA
Statistics
Matches: 227, Mismatches: 41, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
87 75 0.33
88 87 0.38
89 1 0.00
90 3 0.01
91 2 0.01
94 4 0.02
95 55 0.24
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (88 bp):
TAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCTTTCGACTTG
CGATGTTATCCCAATCAATTCTG
Found at i:8430970 original size:95 final size:90
Alignment explanation
Indices: 8430665--8431019 Score: 337
Period size: 95 Copynumber: 3.9 Consensus size: 90
8430655 TCGATTCACA
* * *
8430665 GTGTTATCCCGATCGATTCCTTATCTTTTGACTTGCGATATTATCCCAATCAATTCTGTAAAACC
1 GTGTTATCCCGATCGATT-CTTATCTTTCGACTTGCGATGTTATCCCAATCAATTCTGTAAGACC
* * * * *
8430730 TCTAGGCAT-A--ATT-CGATTCGTG
65 TCCAAGCATGATTTTTAAGATTCGCG
* * * *
8430752 ATGTTATCCCGATCGATTCCTTATCTTTCGACTCGCGATGTTATCCCAATCGATTTTGTAAGACC
1 GTGTTATCCCGATCGATT-CTTATCTTTCGACTTGCGATGTTATCCCAATCAATTCTGTAAGACC
** * *
8430817 TCCGGGCAT-AATTTT--GATTCGTG
65 TCCAAGCATGATTTTTAAGATTCGCG
* * * * *
8430840 GTGTTATCCTGATCGATTCTTTATATTTCAACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACC
1 GTGTTATCCCGATCGATTC-TTATCTTTCGACTTGCGATGTTATCCCAATCAATTCTGTAAGACC
* *
8430905 TCCTAGCATGATTTTTAAGATCTTTAGGCG
65 TCCAAGCATGATTTTTAAGA---TT-CGCG
* * * *
8430935 GTGTTATCCCGATCGATTCTTGATCTTTTGACTTGCAATGTTATCCCAATCAAATCTATAAGACC
1 GTGTTATCCCGATCGATTCTT-ATCTTTCGACTTGCGATGTTATCCCAATCAATTCTGTAAGACC
*
8431000 TACAAGCATGATTTTTAAGA
65 TCCAAGCATGATTTTTAAGA
8431020 CCTCCGGGCA
Statistics
Matches: 222, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
87 67 0.30
88 69 0.31
89 7 0.03
91 2 0.01
94 4 0.02
95 73 0.33
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (90 bp):
GTGTTATCCCGATCGATTCTTATCTTTCGACTTGCGATGTTATCCCAATCAATTCTGTAAGACCT
CCAAGCATGATTTTTAAGATTCGCG
Found at i:8431173 original size:88 final size:87
Alignment explanation
Indices: 8431010--8431190 Score: 217
Period size: 88 Copynumber: 2.1 Consensus size: 87
8431000 TACAAGCATG
* *
8431010 ATTTT-TAAGACCTCCGGGCATAAATTCGATTCAGGGTGTTATCCCGATTGATTCTTGATTTTTT
1 ATTTTGTAAGACCTCCGGGCATAAATTCGATTCAGGGTGTTATCCCGATCGATTCTTGAGTTTTT
**
8431074 AACTTAGGGTGTTGTCCCAATCA
66 AACTTAGGGTGTCATCCCAAT-A
* **
8431097 ATTTTGTAAGACCTCTGGGCATAAATTCGATTC-GTGGTGTTATTTCGATCGATTCATT-AGTTT
1 ATTTTGTAAGACCTCCGGGCATAAATTCGATTCAG-GGTGTTATCCCGATCGATTC-TTGAGTTT
* *
8431160 TTGACTT-GCGGTGTCATCCCAATT
64 TTAACTTAG-GGTGTCATCCCAATA
8431184 ATTTTGT
1 ATTTTGT
8431191 GTTTTTTTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
87 14 0.17
88 65 0.80
89 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (87 bp):
ATTTTGTAAGACCTCCGGGCATAAATTCGATTCAGGGTGTTATCCCGATCGATTCTTGAGTTTTT
AACTTAGGGTGTCATCCCAATA
Found at i:8431401 original size:18 final size:19
Alignment explanation
Indices: 8431378--8431417 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8431368 ATTAATTATT
8431378 AAAATA-AAAAAAAAAGAG
1 AAAATAGAAAAAAAAAGAG
*
8431396 AAAATAGAAAAAAAAATAG
1 AAAATAGAAAAAAAAAGAG
8431415 AAA
1 AAA
8431418 GTAGGGTGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (19 bp):
AAAATAGAAAAAAAAAGAG
Found at i:8432804 original size:16 final size:16
Alignment explanation
Indices: 8432785--8432911 Score: 97
Period size: 16 Copynumber: 8.2 Consensus size: 16
8432775 ATAGGTTTCT
8432785 AAAACTCCTAAAATCC
1 AAAACTCCTAAAATCC
*
8432801 AAAA-TCCTAAAATCT
1 AAAACTCCTAAAATCC
* *
8432816 GAAAC-CCTAAAAATCT
1 AAAACTCCT-AAAATCC
*
8432832 AAAATCCCCT-AAATCC
1 AAAA-CTCCTAAAATCC
**
8432848 -AAACGACTAAAATCC
1 AAAACTCCTAAAATCC
*
8432863 AAAACCCCTAAAATCC
1 AAAACTCCTAAAATCC
* *
8432879 -AAAC-CCCAAAATTC
1 AAAACTCCTAAAATCC
8432893 AAAA-TCCCTAAAATCC
1 AAAACT-CCTAAAATCC
8432909 AAA
1 AAA
8432912 CCCTTAAATA
Statistics
Matches: 90, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
14 11 0.12
15 32 0.36
16 43 0.48
17 1 0.01
18 3 0.03
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAACTCCTAAAATCC
Found at i:8432814 original size:8 final size:8
Alignment explanation
Indices: 8432783--8432838 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 8
8432773 CCATAGGTTT
8432783 CTAAAACTC
1 CTAAAA-TC
8432792 CTAAAATC
1 CTAAAATC
8432800 C-AAAATC
1 CTAAAATC
8432807 CTAAAAT-
1 CTAAAATC
* *
8432814 CTGAAACC
1 CTAAAATC
8432822 CTAAAAAT-
1 CT-AAAATC
8432830 CTAAAATC
1 CTAAAATC
8432838 C
1 C
8432839 CCTAAATCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
7 17 0.44
8 13 0.33
9 9 0.23
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (8 bp):
CTAAAATC
Found at i:8432826 original size:30 final size:30
Alignment explanation
Indices: 8432786--8432920 Score: 148
Period size: 30 Copynumber: 4.4 Consensus size: 30
8432776 TAGGTTTCTA
*
8432786 AAACTCCTAAAATCCAAAAT-CCTAAAATCTG
1 AAAC-CCTAAAATCCAAAATCCCTAAAATC-C
*
8432817 AAACCCTAAAAATCTAAAATCCCCT-AAATCC
1 AAACCCT-AAAATCCAAAAT-CCCTAAAATCC
* *
8432848 AAACGACTAAAATCCAAAACCCCTAAAATCC
1 AAAC-CCTAAAATCCAAAATCCCTAAAATCC
* *
8432879 AAACCCCAAAATTCAAAATCCCTAAAATCC
1 AAACCCTAAAATCCAAAATCCCTAAAATCC
*
8432909 AAACCCTTAAAT
1 AAACCCTAAAAT
8432921 AAAAACCCCA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
30 39 0.44
31 39 0.44
32 7 0.08
33 3 0.03
ACGTcount: A:0.50, C:0.30, G:0.01, T:0.19
Consensus pattern (30 bp):
AAACCCTAAAATCCAAAATCCCTAAAATCC
Found at i:8432895 original size:14 final size:14
Alignment explanation
Indices: 8432837--8432914 Score: 66
Period size: 15 Copynumber: 5.2 Consensus size: 14
8432827 AATCTAAAAT
*
8432837 CCCCTAAATCCAAA
1 CCCCAAAATCCAAA
* *
8432851 CGACTAAAATCCAAAA
1 C-CCCAAAATCC-AAA
8432867 CCCCTAAAATCCAAA
1 CCCC-AAAATCCAAA
*
8432882 CCCCAAAATTCAAAA
1 CCCCAAAA-TCCAAA
*
8432897 TCCCTAAAATCCAAA
1 -CCCCAAAATCCAAA
8432912 CCC
1 CCC
8432915 TTAAATAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
14 8 0.16
15 25 0.49
16 18 0.35
ACGTcount: A:0.47, C:0.37, G:0.01, T:0.14
Consensus pattern (14 bp):
CCCCAAAATCCAAA
Found at i:8432947 original size:16 final size:16
Alignment explanation
Indices: 8432786--8432958 Score: 55
Period size: 16 Copynumber: 10.8 Consensus size: 16
8432776 TAGGTTTCTA
*
8432786 AAACTCCTAAAATC-CA
1 AAAC-CCTAAAATCTCC
* *
8432802 AAATCCTAAAATCT-G
1 AAACCCTAAAATCTCC
*
8432817 AAACCCTAAAAATCT-A
1 AAACCCT-AAAATCTCC
8432833 AAATCCCCT-AAA--TCC
1 AAA--CCCTAAAATCTCC
* *
8432848 AAACGACTAAAATC-CA
1 AAAC-CCTAAAATCTCC
8432864 AAACCCCTAAAA--TCC
1 AAA-CCCTAAAATCTCC
* *
8432879 AAACCCCAAAAT-TCA
1 AAACCCTAAAATCTCC
8432894 AAATCCCTAAAA--TCC
1 AAA-CCCTAAAATCTCC
* *
8432909 AAACCCTTAAATAAAAACCCC
1 AAACCC-----TAAAATCTCC
8432930 AAACCCTAAAATCTCC
1 AAACCCTAAAATCTCC
*
8432946 AAACTCTAAAATC
1 AAACCCTAAAATC
8432959 AAAACCCTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 40
0.68 0.10 0.23
Matches are distributed among these distances:
13 1 0.01
14 13 0.11
15 35 0.29
16 53 0.44
17 1 0.01
18 4 0.03
19 5 0.04
21 8 0.07
ACGTcount: A:0.50, C:0.31, G:0.01, T:0.18
Consensus pattern (16 bp):
AAACCCTAAAATCTCC
Found at i:8432963 original size:37 final size:35
Alignment explanation
Indices: 8432898--8432970 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 35
8432888 AATTCAAAAT
*
8432898 CCCTAAAATCCAAACCCTTAAATAAAAACCCCAAA
1 CCCTAAAATCCAAACCCTAAAATAAAAACCCCAAA
* * *
8432933 CCCTAAAATCTCCAAACTCTAAAATCAAAACCCTAAA
1 CCCTAAAA--TCCAAACCCTAAAATAAAAACCCCAAA
8432970 C
1 C
8432971 TTCTATATCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 8 0.25
37 24 0.75
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.16
Consensus pattern (35 bp):
CCCTAAAATCCAAACCCTAAAATAAAAACCCCAAA
Found at i:8433014 original size:17 final size:17
Alignment explanation
Indices: 8432992--8433035 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
8432982 AAAATTCAAG
* *
8432992 CCTTAAGACCCTTTGAA
1 CCTTAAAACCCTCTGAA
8433009 CCTTAAAACCCTCTGAA
1 CCTTAAAACCCTCTGAA
8433026 CCTTAAAACC
1 CCTTAAAACC
8433036 AAACCTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.34, C:0.34, G:0.07, T:0.25
Consensus pattern (17 bp):
CCTTAAAACCCTCTGAA
Found at i:8434611 original size:28 final size:29
Alignment explanation
Indices: 8434556--8434612 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
8434546 TGGTTTTAAA
*
8434556 TTACTAATGAAACAATACTCAAGACATAG
1 TTACTAATGAAACAACACTCAAGACATAG
8434585 TTACTAATGAAA-AACACTCAAGACATAG
1 TTACTAATGAAACAACACTCAAGACATAG
8434613 GAATCAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.49, C:0.18, G:0.11, T:0.23
Consensus pattern (29 bp):
TTACTAATGAAACAACACTCAAGACATAG
Found at i:8439628 original size:20 final size:20
Alignment explanation
Indices: 8439603--8439661 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
8439593 ACATATAATA
8439603 TATTTAAAATGTAAATTATT
1 TATTTAAAATGTAAATTATT
* * *
8439623 TATTTAATATATAATTTATT
1 TATTTAAAATGTAAATTATT
*
8439643 TATTTAACATGTAAATTAT
1 TATTTAAAATGTAAATTAT
8439662 GAAAATATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
TATTTAAAATGTAAATTATT
Found at i:8441493 original size:21 final size:21
Alignment explanation
Indices: 8441454--8441493 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8441444 ATTATAAATC
8441454 AATTATAAAAAATATTTATTT
1 AATTATAAAAAATATTTATTT
*
8441475 AATT-TAAAAATTATATTAT
1 AATTATAAAAAATAT-TTAT
8441494 ATTGTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTATAAAAAATATTTATTT
Found at i:8446838 original size:29 final size:29
Alignment explanation
Indices: 8446792--8446874 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
8446782 TTTTAAATTT
*
8446792 TTTGA-GGTTT-AGGTTTTAGGCTTTTAA
1 TTTGAGGGTTTAAGGTTTTAGGGTTTTAA
8446819 TTTGAGGGTTTAAGGTTTTAGGGTTTTAA
1 TTTGAGGGTTTAAGGTTTTAGGGTTTTAA
8446848 TTTGAGGGTTTAAGGTTTTAGGGTTTT
1 TTTGAGGGTTTAAGGTTTTAGGGTTTT
8446875 CAGTTTTTAG
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 43 0.81
ACGTcount: A:0.18, C:0.01, G:0.30, T:0.51
Consensus pattern (29 bp):
TTTGAGGGTTTAAGGTTTTAGGGTTTTAA
Found at i:8446898 original size:14 final size:14
Alignment explanation
Indices: 8446805--8446911 Score: 83
Period size: 14 Copynumber: 7.4 Consensus size: 14
8446795 GAGGTTTAGG
*
8446805 TTTTAGGCTTTTAA
1 TTTTAGGGTTTTAA
*
8446819 TTTGAGGG-TTTAA
1 TTTTAGGGTTTTAA
8446832 GGTTTTAGGGTTTTAA
1 --TTTTAGGGTTTTAA
*
8446848 TTTGAGGG-TTTAA
1 TTTTAGGGTTTTAA
*
8446861 GGTTTTAGGGTTTTCAGT
1 --TTTTAGGGTTTT-A-A
*
8446879 TTTTAGGGTTTTTA
1 TTTTAGGGTTTTAA
* *
8446893 TTTTAGGATTTTGA
1 TTTTAGGGTTTTAA
8446907 TTTTA
1 TTTTA
8446912 TTGTTTAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
13 10 0.13
14 30 0.40
15 14 0.19
16 20 0.27
17 1 0.01
ACGTcount: A:0.19, C:0.02, G:0.25, T:0.54
Consensus pattern (14 bp):
TTTTAGGGTTTTAA
Found at i:8446990 original size:21 final size:21
Alignment explanation
Indices: 8446924--8446997 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
8446914 GTTTAAAAGG
**
8446924 TTTAGGGTTTTAGTATTTTGA-
1 TTTAGGG-TTTAGGGTTTTGAT
* *
8446945 TTTGGAGGTTTAAGGTTTT-ATT
1 TTTAG-GGTTTAGGGTTTTGA-T
8446967 TTTAGGGTTTAGGGTTTTGAT
1 TTTAGGGTTTAGGGTTTTGAT
*
8446988 TTTAGAGTTT
1 TTTAGGGTTT
8446998 GGGATTTAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 1 0.02
21 34 0.81
22 7 0.17
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTTGAT
Found at i:8446991 original size:14 final size:14
Alignment explanation
Indices: 8446974--8447055 Score: 60
Period size: 14 Copynumber: 5.7 Consensus size: 14
8446964 ATTTTTAGGG
*
8446974 TTTAGGGTTTTGAT
1 TTTAAGGTTTTGAT
*
8446988 TTT-AGAGTTTGGGA-
1 TTTAAG-GTTT-TGAT
8447002 TTTAAGGTTTTGAT
1 TTTAAGGTTTTGAT
**
8447016 TTTAAGGTTTAAAAT
1 TTTAAGGTTT-TGAT
*
8447031 GTTTAAGATTTTGAT
1 -TTTAAGGTTTTGAT
*
8447046 TTTAGGGTTT
1 TTTAAGGTTT
8447056 AAAGGGTTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
13 3 0.06
14 32 0.62
15 8 0.15
16 9 0.17
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTTGAT
Found at i:8447079 original size:30 final size:29
Alignment explanation
Indices: 8446970--8447093 Score: 119
Period size: 30 Copynumber: 4.2 Consensus size: 29
8446960 TTTTATTTTT
* *
8446970 AGGGTTTAGGGTTTTGATTTTAGAGTTT-
1 AGGGTTTAAGGTTTTGATTTTAGGGTTTA
*
8446998 -GGGATTTAAGGTTTTGATTTTAAGGTTTAA
1 AGGG-TTTAAGGTTTTGATTTTAGGGTTT-A
** *
8447028 AATGTTTAAGATTTTGATTTTAGGGTTTAA
1 AGGGTTTAAGGTTTTGATTTTAGGGTTT-A
* *
8447058 AGGGTTTAAGGTTTT-AGTTTTAGTGTTTG
1 AGGGTTTAAGGTTTTGA-TTTTAGGGTTTA
8447087 AGGGTTT
1 AGGGTTT
8447094 TGAATTTTAA
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
27 3 0.04
28 21 0.27
29 8 0.10
30 46 0.58
31 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (29 bp):
AGGGTTTAAGGTTTTGATTTTAGGGTTTA
Found at i:8447475 original size:3 final size:3
Alignment explanation
Indices: 8447451--8447499 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
8447441 TTTTGAAATC
* * *
8447451 ATT ATT -TT ATT ATT GTT GTT ATT ATC ATT ATT ATT ATT AATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
8447496 ATT A
1 ATT A
8447500 CAAAACAACA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:8448762 original size:30 final size:30
Alignment explanation
Indices: 8448726--8448792 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
8448716 AAAATGCTTA
8448726 AAAAATAACAATAATCTAAAAAATAGTAAT
1 AAAAATAACAATAATCTAAAAAATAGTAAT
* *
8448756 AAAAATAATAATAATCTAAAAAATTGTAAT
1 AAAAATAACAATAATCTAAAAAATAGTAAT
8448786 AAAAATA
1 AAAAATA
8448793 TATATATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (30 bp):
AAAAATAACAATAATCTAAAAAATAGTAAT
Found at i:8448765 original size:15 final size:14
Alignment explanation
Indices: 8448743--8448790 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
8448733 ACAATAATCT
8448743 AAAAAATAGTAATA
1 AAAAAATAGTAATA
* *
8448757 AAAATAATAATAATCT
1 AAAA-AATAGTAAT-A
*
8448773 AAAAAATTGTAATA
1 AAAAAATAGTAATA
8448787 AAAA
1 AAAA
8448791 TATATATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 8 0.30
15 15 0.56
16 4 0.15
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (14 bp):
AAAAAATAGTAATA
Found at i:8448779 original size:18 final size:17
Alignment explanation
Indices: 8448726--8448777 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 17
8448716 AAAATGCTTA
*
8448726 AAAAATAACAATAATCT
1 AAAAATAATAATAATCT
*
8448743 -AAAA-AATAGTAA--T
1 AAAAATAATAATAATCT
8448756 AAAAATAATAATAATCT
1 AAAAATAATAATAATCT
8448773 AAAAA
1 AAAAA
8448778 ATTGTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 1 0.04
14 4 0.14
15 13 0.46
16 4 0.14
17 6 0.21
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAAATAATAATAATCT
Found at i:8450874 original size:50 final size:49
Alignment explanation
Indices: 8450800--8451404 Score: 500
Period size: 50 Copynumber: 12.0 Consensus size: 49
8450790 TTAAAATCTG
*
8450800 AAAAGGACTCCTCTCATCAGAGGCTCAACAACTTTAAAAATTTCATCTTA
1 AAAAGG-CTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTTA
* * * *
8450850 AAAAGGGCTCCTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGA
1 AAAA-GGCTCCTCTCAGCAGAGGCTCAACAAC-TTTAAAAATTT--CATCTTA
* * * *
8450903 AAAAGACTCTTCTCAGCAGAGGCTCAACAACTTTAAAAATCTAATCTTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTT-A
* * * * * *
8450953 AAAAGGCTCTTTTTAGCAGAAGCTCAACGACTTTAAAAATTTCATCTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTTA
** * * * *
8451002 AAAA-GCTCCTCTCAATATAGGCTCAACAACTTTAAAATTTTAAAATCTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTT--CATCTTA
* * * * *
8451052 AAAAGGGCTCCTCTCAGCAGAGTCTTAACAACTTTTGAAAATTTAAAATCTGA
1 AAAA-GGCTCCTCTCAGCAGAGGCTCAACAAC-TTTAAAAATTT--CATCTTA
* * * *
8451105 AAAAGACTCTTTTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTT-A
* * * * *
8451155 AAAGGGCTCCTCTTAGCAGAAGCTCAACGACTTTAAAAATTTCATCTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTTA
* * * * *
8451204 CAAA-GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTTAAAATCTAA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTT--CATCTTA
* * * *
8451254 AAAAGACTCCTCTCAGCAAAAGCTCAATAACTTTAAAAATTTCATCTTGA
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTT-A
* * * * *
8451304 AAAA-GCTCGCTACCTCAGCAAAAGCTCAACGATTTTAAAAATTTTATCTTGGA
1 AAAAGGCTC-CT--CTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTT--A
* * *
8451357 AAAA-GCTTCTCTCCAGCAGAGGACTCAATAACTTT-AAAACTTCATCTT
1 AAAAGGCTCCTCT-CAGCAGAGG-CTCAACAACTTTAAAAATTTCATCTT
8451405 TGAAAAAAGC
Statistics
Matches: 449, Mismatches: 85, Indels: 41
0.78 0.15 0.07
Matches are distributed among these distances:
48 60 0.13
49 24 0.05
50 134 0.30
51 81 0.18
52 110 0.24
53 40 0.09
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (49 bp):
AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTTA
Found at i:8450897 original size:102 final size:100
Alignment explanation
Indices: 8450800--8451353 Score: 536
Period size: 102 Copynumber: 5.5 Consensus size: 100
8450790 TTAAAATCTG
* *
8450800 AAAAGGACTCCTCTCATCAGAGGCTCAACAACTTTAAAAATTTCATCTTAAAAAGGGCTCCTCTC
1 AAAAG-ACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTAATCTTAAAAAGGGCTCCTCTC
*
8450865 AGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGA
65 AGCAAA-GCTCAACAAC-TTTAAAAATTTAAAATCTGA
* * * * *
8450903 AAAAGACTCTTCTCAGCAGAGGCTCAACAACTTTAAAAATCTAATCTTGAAAAA-GGCTCTTTTT
1 AAAAGACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTAATCTT-AAAAAGGGCTCCTCTC
* *
8450967 AGCAGAAGCTCAACGACTTTAAAAATTT--CATCTGA
65 AGCA-AAGCTCAACAACTTTAAAAATTTAAAATCTGA
** * * *
8451002 AAAAG-CTCCTCTCAATATAGGCTCAACAACTTTAAAATTTTAAAATCTGAAAAAGGGCTCCTCT
1 AAAAGACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTT--AATCTTAAAAAGGGCTCCTCT
* * *
8451066 CAGCAGAGTCTTAACAACTTTTGAAAATTTAAAATCTGA
64 CAGCAAAG-CTCAACAAC-TTTAAAAATTTAAAATCTGA
* * * * * *
8451105 AAAAGACTCTTTTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTTA
1 AAAAGACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTAATCTTAAAAAGGGCTCCTCTCA
* *
8451170 GCAGAAGCTCAACGACTTTAAAAATTT--CATCTGA
66 GCA-AAGCTCAACAACTTTAAAAATTTAAAATCTGA
* * * * *
8451204 CAAAG-CTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTTAAAATC-TAAAAAAGACTCCTCT
1 AAAAGACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTT--AATCTTAAAAAGGGCTCCTCT
* *
8451267 CAGCAAAAGCTCAATAACTTTAAAAATTT--CATCTTGA
64 CAGC-AAAGCTCAACAACTTTAAAAATTTAAAATC-TGA
* * * * *
8451304 AAAAG-CTCGCTACCTCAGCAAAAGCTCAACGATTTTAAAAATTTTATCTT
1 AAAAGACTC-CT--CTCAGCAGAGGCTCAACAACTTTAAAAATTTAATCTT
8451354 GGAAAAAGCT
Statistics
Matches: 370, Mismatches: 62, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
98 61 0.16
99 69 0.19
100 37 0.10
101 36 0.10
102 88 0.24
103 50 0.14
104 29 0.08
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (100 bp):
AAAAGACTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATTTAATCTTAAAAAGGGCTCCTCTCA
GCAAAGCTCAACAACTTTAAAAATTTAAAATCTGA
Found at i:8451154 original size:202 final size:201
Alignment explanation
Indices: 8450795--8451450 Score: 772
Period size: 202 Copynumber: 3.2 Consensus size: 201
8450785 AAAATTTAAA
* * *
8450795 ATCTGAAAAGGACTCCTCTC-ATCAGAGGCTCAACAACTTTAAAAATTT--CATCTTAAAAAGGG
1 ATCTGAAAAAG-CTCCTCTCAAT-AGAGGCTCAACAACTTTAAAATTTTAAAATC-TAAAAAGGG
8450857 CTCCTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGAAAAAGACTCTTCTCAGCAG
63 CTCCTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGAAAAAGACTCTTCTCAGCAG
* *
8450922 AGGCTCAACAACTTTAAAAATCTAATCTTGAAAAAGGCTCTTTTTAGCAGAAGCTCAACGACTTT
128 AGGCTCAACAACTTTAAAAATCTAATCTTGAAAAAGGCTCCTCTTAGCAGAAGCTCAACGACTTT
8450987 AAAAATTTC
193 AAAAATTTC
*
8450996 ATCTGAAAAAGCTCCTCTCAATATAGGCTCAACAACTTTAAAATTTTAAAATCTGAAAAAGGGCT
1 ATCTGAAAAAGCTCCTCTCAATAGAGGCTCAACAACTTTAAAATTTTAAAATCT-AAAAAGGGCT
* * * *
8451061 CCTCTCAGCAGAGTCTTAACAACTTTTGAAAATTTAAAATCTGAAAAAGACTCTTTTCAGCAGAG
65 CCTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGAAAAAGACTCTTCTCAGCAGAG
* *
8451126 GCTCAACAACTTTAAAAATCTCATCTTGAAAAGGGCTCCTCTTAGCAGAAGCTCAACGACTTTAA
130 GCTCAACAACTTTAAAAATCTAATCTTGAAAAAGGCTCCTCTTAGCAGAAGCTCAACGACTTTAA
8451191 AAATTTC
195 AAATTTC
* * * *
8451198 ATCTGACAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTTAAAATCTAAAAAAGACTC
1 ATCTGAAAAAGCTCCTCTCAATAGAGGCTCAACAACTTTAAAATTTTAAAATCTAAAAAGGGCTC
* * * * *
8451263 CTCTCAGCAAAAGCTCAATAAC-TTTAAAAATTT--CATCTTGAAAAAG-CTCGCTACCTCAGCA
66 CTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATC-TGAAAAAGACT--CT-TCTCAGCA
* * * * * * * * * **
8451324 AAAGCTCAACGATTTTAAAAATTTTATCTTGGAAAAA-GCTTCTCTCCAGCAGAGGACTCAATAA
127 GAGGCTCAACAACTTTAAAAATCTAATCTT-GAAAAAGGCTCCTCT-TAGCAGAAG-CTCAACGA
*
8451388 CTTT-AAAACTTC
189 CTTTAAAAATTTC
* * * * *
8451400 ATCTTTGAAAAAAGCTCTTCTTAATTAGAGGCTCAACTAGTTAAAAATTTT
1 ATC--TG-AAAAAGCTCCTCTCAA-TAGAGGCTCAACAACTTTAAAATTTT
8451451 CTGAAAAACT
Statistics
Matches: 394, Mismatches: 46, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
198 5 0.01
199 8 0.02
200 43 0.11
201 76 0.19
202 215 0.55
203 10 0.03
204 2 0.01
205 13 0.03
206 22 0.06
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (201 bp):
ATCTGAAAAAGCTCCTCTCAATAGAGGCTCAACAACTTTAAAATTTTAAAATCTAAAAAGGGCTC
CTCTCAGCAAAGGCTTAACAACTTTTAAAAATTTAAAATCTGAAAAAGACTCTTCTCAGCAGAGG
CTCAACAACTTTAAAAATCTAATCTTGAAAAAGGCTCCTCTTAGCAGAAGCTCAACGACTTTAAA
AATTTC
Found at i:8451752 original size:50 final size:47
Alignment explanation
Indices: 8451522--8451770 Score: 215
Period size: 48 Copynumber: 5.2 Consensus size: 47
8451512 AAACAGTTTA
*
8451522 AAAAT-TC-TCTTGAAAAAGCT-CTCTTC-ATAACAGAGCTCAACAACTT
1 AAAATCTCATCTTGAAAAAGCTCCTC-TCAAT-AGAG-GCTCAACAACTT
* *
8451568 AAAATCTCATTTTGAAAAAGCTCCTCTCAACAGAGGTCTCAACAAACTTT
1 AAAATCTCATCTTGAAAAAGCTCCTCTCAATAGAGG-CTCAAC-AAC-TT
* * *
8451618 AAAAATCTTA-CTTGGAAAAGCTCCTCTCAGTAGAGG-TC-ACAACTTT
1 -AAAATCTCATCTTGAAAAAGCTCCTCTCAATAGAGGCTCAACAAC-TT
* * * * *
8451664 AAAATTTCATCTTGAAAAGGGTTCCTCTTAGTAGAGGCTCAACAACTT
1 AAAATCTCATCTTGAAAA-AGCTCCTCTCAATAGAGGCTCAACAACTT
*
8451712 AAAATCTCATTTTGAAACAGAGCTCCATCTCAATAGAGGCTCCAACAACTT
1 AAAATCTCATCTTGAAA-A-AGCTCC-TCTCAATAGAGGCT-CAACAACTT
*
8451763 TAAATCTC
1 AAAATCTC
8451771 TCATATGTTC
Statistics
Matches: 167, Mismatches: 21, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
45 7 0.04
46 18 0.11
47 20 0.12
48 44 0.26
49 18 0.11
50 36 0.22
51 24 0.14
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.29
Consensus pattern (47 bp):
AAAATCTCATCTTGAAAAAGCTCCTCTCAATAGAGGCTCAACAACTT
Found at i:8457258 original size:19 final size:19
Alignment explanation
Indices: 8457236--8457281 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8457226 ATGTATTCTA
8457236 TATTATTATATTTA-TTATG
1 TATT-TTATATTTAGTTATG
*
8457255 TATTCTT-TATTTAGTTATT
1 TATT-TTATATTTAGTTATG
8457274 TATTTTAT
1 TATTTTAT
8457282 TTCAGATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (19 bp):
TATTTTATATTTAGTTATG
Found at i:8457265 original size:14 final size:14
Alignment explanation
Indices: 8457224--8457265 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
8457214 TTCTTTGATT
*
8457224 TTATGTATTCTATA
1 TTATGTATTCTTTA
*
8457238 TTAT-TA-TATTTA
1 TTATGTATTCTTTA
8457250 TTATGTATTCTTTA
1 TTATGTATTCTTTA
8457264 TT
1 TT
8457266 TAGTTATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (14 bp):
TTATGTATTCTTTA
Found at i:8457273 original size:26 final size:26
Alignment explanation
Indices: 8457224--8457277 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
8457214 TTCTTTGATT
*
8457224 TTATGTATTCTATATTATTATATTTA
1 TTATGTATTCTATATTAGTATATTTA
*
8457250 TTATGTATTCTTTATTTAGT-TATTTA
1 TTATGTATTCTATA-TTAGTATATTTA
8457276 TT
1 TT
8457278 TTATTTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.65
Consensus pattern (26 bp):
TTATGTATTCTATATTAGTATATTTA
Found at i:8457868 original size:31 final size:31
Alignment explanation
Indices: 8457809--8457878 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
8457799 AATTTCCAGA
* **
8457809 TTCCGGCGAAAATTCCGGCGAAGTTTGAATT
1 TTCCGGCGAAAATTCCGGCCAACATTGAATT
* *
8457840 TTCCGGTGAAAATTCCGGCCAACATTGAA-G
1 TTCCGGCGAAAATTCCGGCCAACATTGAATT
8457870 TTCCGGCGA
1 TTCCGGCGA
8457879 CCTGCCCAGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (31 bp):
TTCCGGCGAAAATTCCGGCCAACATTGAATT
Found at i:8457963 original size:20 final size:20
Alignment explanation
Indices: 8457938--8457975 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8457928 ACTTCCGGTG
*
8457938 AAATTTCCAGATTCCGGCGA
1 AAATTTCCAGAATCCGGCGA
8457958 AAATTTCCAGAATCCGGC
1 AAATTTCCAGAATCCGGC
8457976 ACCGGTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
AAATTTCCAGAATCCGGCGA
Found at i:8458474 original size:22 final size:23
Alignment explanation
Indices: 8458444--8458525 Score: 60
Period size: 23 Copynumber: 3.4 Consensus size: 23
8458434 TTTTTAGGGA
8458444 AAATGAAATATCAATTTTCTCAG
1 AAATGAAATATCAATTTTCTCAG
* * **
8458467 AAAT-AAATTTCAAATATTTTTGGG
1 AAATGAAATATC-AAT-TTTCTCAG
8458491 AAAAGTTGAAAGTATCAATTTTCTCAG
1 -AAA--TGAAA-TATCAATTTTCTCAG
8458518 AAAT-AAAT
1 AAATGAAAT
8458526 TTCGAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 15
0.66 0.12 0.22
Matches are distributed among these distances:
22 7 0.16
23 10 0.23
24 6 0.14
25 3 0.07
26 3 0.07
27 6 0.14
28 6 0.14
29 3 0.07
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (23 bp):
AAATGAAATATCAATTTTCTCAG
Found at i:8458720 original size:60 final size:58
Alignment explanation
Indices: 8458423--8458815 Score: 461
Period size: 60 Copynumber: 6.7 Consensus size: 58
8458413 AAAATTCCAA
* *
8458423 AAAAAAATATATTTTTAGGGAAAA--TGAAA-TATCAATTTT-CTCAGAAATAAATTTC
1 AAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
*
8458478 -----AAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTT-CTCAGAAATAAATTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
*
8458529 GAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 -AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTT-C
*
8458594 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC
1 --AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT--AAATTTC
8458656 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
** * *
8458714 -AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAGTTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC
* *
8458773 CAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
8458816 CTACAAAAAA
Statistics
Matches: 301, Mismatches: 13, Indels: 43
0.84 0.04 0.12
Matches are distributed among these distances:
48 7 0.02
49 8 0.03
50 7 0.02
51 26 0.09
56 1 0.00
57 55 0.18
58 32 0.11
59 8 0.03
60 88 0.29
61 4 0.01
62 3 0.01
63 7 0.02
64 10 0.03
65 1 0.00
66 44 0.15
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (58 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
Found at i:8458753 original size:117 final size:113
Alignment explanation
Indices: 8458423--8458815 Score: 487
Period size: 117 Copynumber: 3.4 Consensus size: 113
8458413 AAAATTCCAA
* *
8458423 AAAAAAATATATTTTTAGGGAAAA--TGAAA-TATCAATTTT-CTCAGAAATAAATTTC--AAAT
1 AAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAA
* *
8458482 ATTTTTGGGAAAAGTTGAAAGTATCAATTTT-CTCAGAAAT-AAATTTC
65 ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTTC
8458529 GAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 -AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTT-C
8458594 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC
59 ----AAAAAA-ATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATC-AAATTTC
*
8458656 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
* *
8458721 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAGTTTC
66 --TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATC-AAATTTC
*
8458773 CAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
8458816 CTACAAAAAA
Statistics
Matches: 252, Mismatches: 10, Indels: 38
0.84 0.03 0.13
Matches are distributed among these distances:
106 16 0.06
107 7 0.03
108 5 0.02
109 10 0.04
110 2 0.01
113 2 0.01
115 11 0.04
116 8 0.03
117 86 0.34
120 1 0.00
121 10 0.04
122 3 0.01
123 8 0.03
124 25 0.10
125 7 0.03
126 44 0.17
127 7 0.03
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (113 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCAAAAAAA
TTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAATTTC
Found at i:8466271 original size:49 final size:49
Alignment explanation
Indices: 8466217--8467174 Score: 434
Period size: 50 Copynumber: 18.9 Consensus size: 49
8466207 GAACATATGA
*
8466217 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAAAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * *
8466266 GAGATTTTAAAGTTGTTGAGCCTCTACTAAGAGGAGCCCTTTTCAAGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * *
8466315 GAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCT-TTTCCAAGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * * *
8466363 AAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCCCTTTTCAAAAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
*
8466412 GAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT-TTTTCAAGA-
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * * **
8466459 GA-ATTTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTGTTGTTGAACCT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGC-TCTT-TTCAAGAT
** * * * **** * * * *
8466510 CTG--TTGAGAGGAGCTTTTTCAAGAAAATTTTAAAGTAGTTGAGCCTCTATT-AAGAA
1 GAGATTTTA-A--AG-TTGTT-GAGCCTCTATT-GAG-AG--GAG-CTCTTTTCAAGAT
* ** * *
8466566 GAGCTTTTTCAAGATGGATTTAAAGTT-ATTGAGCCTCTGCTGAGAGAAG--CTTTTCCAGAT
1 GAG-ATTTT-AA-A--G--TT---GTTGA----GCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * * * * ** *
8466626 AAAATTTTAAAATCGTTGAGCCTTTGCTGAGAAGGAGCCCTTTTCAAGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAG-AGGAGCTCTTTTCAAGAT
* * * * **
8466676 GAAATTTTTAAAGTTATTGAGCTTTTGCTGAGAGGAG-TCTTTTTC-AGATTTT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTC-TTTTCAAGA---T
* * *
8466728 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT-TTTTC-AGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * * ** * *
8466775 GAAATTTTTAAAGTCGTTGAGCTTCTGCTAAGAGGAGCCCTTTTCAAGAT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
** *
8466825 GAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAG-TCTTTTTC-AGATTT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTC-TTTTCAAGA--T
* * * ** *
8466876 TAAATTTTCAAAAGTTGTTAAGCCTCTGCTGAGATGAG-TCCTTTTTC-AGATTTT
1 GAGATTTT--AAAGTTGTTGAGCCTCTATTGAGAGGAGCT-C-TTTTCAAGA---T
* * * *
8466930 AAAATTTTAAAGTTGTTGAGCCTATGTTGAGAGGAGCT-TTTTC-AGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
* * * ** * *
8466977 GAAATTTTTAAAGTCGTTGAGCTTCTGCTAAGAGGAGCCCTTTTCAAGAT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
** *
8467027 GAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAG-TCTTTTTC-AGATTT
1 GAGA-TTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTC-TTTTCAAGA--T
* * * * ** * *
8467078 TAAATTTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTAAGAT
1 GAGA-TTTT-AAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
*
8467129 GAAATTTTTAAAGTTGTTGAGCCTCTGA-TGAGAGGAG-TCCTTTTCA
1 GAGA-TTTTAAAGTTGTTGAGCCTCT-ATTGAGAGGAGCT-CTTTTCA
8467175 GATTTTAAAT
Statistics
Matches: 726, Mismatches: 119, Indels: 127
0.75 0.12 0.13
Matches are distributed among these distances:
46 1 0.00
47 54 0.07
48 112 0.15
49 151 0.21
50 163 0.22
51 72 0.10
52 87 0.12
53 20 0.03
54 15 0.02
55 2 0.00
56 5 0.01
57 3 0.00
58 9 0.01
59 12 0.02
60 6 0.01
61 2 0.00
62 3 0.00
64 4 0.01
65 2 0.00
66 3 0.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (49 bp):
GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAGAT
Found at i:8466510 original size:28 final size:28
Alignment explanation
Indices: 8466470--8466525 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
8466460 AATTTTTAAA
*
8466470 GTTGTTGAGCCTCTGTTGAGAGGAGCTT
1 GTTGTTGAACCTCTGTTGAGAGGAGCTT
8466498 GTTGTTGAACCTCTGTTGAGAGGAGCTT
1 GTTGTTGAACCTCTGTTGAGAGGAGCTT
8466526 TTTCAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.14, G:0.34, T:0.36
Consensus pattern (28 bp):
GTTGTTGAACCTCTGTTGAGAGGAGCTT
Found at i:8466539 original size:75 final size:74
Alignment explanation
Indices: 8466423--8466571 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 74
8466413 AGATTTTAAA
* * * * *
8466423 GTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAAGAGAATTTTTAAAGTTGTTGAGCCTCTGTTG
1 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGA-AAATTTTAAAGTAGTTGAGCCTCTATTA
*
8466488 AGAGGAGCTT
65 AGAAGAGCTT
8466498 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGAAAATTTTAAAGTAGTTGAGCCTCTATTAA
1 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGAAAATTTTAAAGTAGTTGAGCCTCTATTAA
8466563 GAAGAGCTT
66 GAAGAGCTT
8466572 TTTCAAGATG
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 33 0.49
75 35 0.51
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (74 bp):
GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGAAAATTTTAAAGTAGTTGAGCCTCTATTAA
GAAGAGCTT
Found at i:8466572 original size:218 final size:220
Alignment explanation
Indices: 8466277--8466712 Score: 542
Period size: 218 Copynumber: 2.0 Consensus size: 220
8466267 AGATTTTAAA
* *
8466277 GTTGTTGAGCCTCTACTAAGAGGAGCCCTTTTCAAGATGAAATTTTAAAGTTGTTGAGCCTCTAC
1 GTTGTTGAACCTCTACTAAGAGGAGCCCTTTTCAAGA-GAAATTTTAAAGTAGTTGAGCCTCTAC
* * * * *
8466342 TGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCCCTTTTC
65 TAAGAAGAGCTTTTCCAAGAT-AGA-TTTAAAGTTATTGAGCCTCTGCTGAGAGAAG--CTTTTC
* * * * * *
8466407 AAAATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAG-AGGAG-CTTTTTCAAGA-G-AATTTTTA
126 AAAATAAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTA
* *
8466468 AAGTTGTTGAGCCTCTGTTGAGAGGAGCTT
191 AAGTTATTGAGCCTCTGCTGAGAGGAGCTT
** * * *
8466498 GTTGTTGAACCTCTGTTGAGAGGAG-CTTTTTCAAGA-AAATTTTAAAGTAGTTGAGCCTCTATT
1 GTTGTTGAACCTCTACTAAGAGGAGCCCTTTTCAAGAGAAATTTTAAAGTAGTTGAGCCTCTACT
* * * *
8466561 AAGAAGAGCTTTTTCAAGATGGATTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCCAGAT
66 AAGAAGAGCTTTTCCAAGATAGATTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCAAAAT
*
8466626 AAAATTTTAAAATCGTTGAGCCTTTGCTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTT
131 AAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTT
* *
8466691 ATTGAGCTTTTGCTGAGAGGAG
196 ATTGAGCCTCTGCTGAGAGGAG
8466713 TCTTTTTCAG
Statistics
Matches: 184, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
214 34 0.18
215 5 0.03
216 38 0.21
217 3 0.02
218 73 0.40
220 10 0.05
221 21 0.11
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (220 bp):
GTTGTTGAACCTCTACTAAGAGGAGCCCTTTTCAAGAGAAATTTTAAAGTAGTTGAGCCTCTACT
AAGAAGAGCTTTTCCAAGATAGATTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCAAAAT
AAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTT
ATTGAGCCTCTGCTGAGAGGAGCTT
Found at i:8466619 original size:167 final size:173
Alignment explanation
Indices: 8466326--8466663 Score: 438
Period size: 167 Copynumber: 2.0 Consensus size: 173
8466316 AAATTTTAAA
* * *
8466326 GTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGTT
1 GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTAGTTGAGCCTCTATT
* * * * *
8466391 GAGAGGAGCCCTTTTCAAAATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCA
66 AAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGC-TTTTCA
* * * * *
8466456 AGA-GAATTTTTAAAGTTGTTGAGCCTCTGTTGAG-AGGAGCTT
130 AGATAAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGCTT
** *
8466498 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGA-AA-ATTTTAAAGTAGTTGAGCCTCTATT
1 GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTAGTTGAGCCTCTATT
* * *
8466561 AAGAAGAG-CTTTTTCAAGATG-GA-TTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCCA
66 AAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCAA
*
8466623 GATAAAATTTTAAAATCGTTGAGCCTTTGCTGAGAAGGAGC
131 GATAAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGC
8466664 CCTTTTCAAG
Statistics
Matches: 144, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
166 8 0.06
167 54 0.38
168 8 0.06
169 11 0.08
170 29 0.20
171 2 0.01
172 32 0.22
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (173 bp):
GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTAGTTGAGCCTCTATT
AAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTTTTCAA
GATAAAATTTTAAAATCGTTGAGCCTCTGCTGAGAAGGAGCTT
Found at i:8466681 original size:50 final size:48
Alignment explanation
Indices: 8466498--8467177 Score: 561
Period size: 50 Copynumber: 13.8 Consensus size: 48
8466488 AGAGGAGCTT
* * *
8466498 GTTGTTGAACCTCTGTTGAGAGGAG-CTTTTTCA-A-GAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGATG-AAATTTTAAA
* ** * * * *
8466544 GTAGTTGAGCCTCTATTAAGAAGAG-CTTTTTCAAGATG-GA-TTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTC-AGATGAAATTTTAAA
* * *
8466590 GTTATTGAGCCTCTGCTGAGAGAAG--CTTTTCCAGATAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTT-CAGATGAAATTTTAAA
* * *
8466637 ATCGTTGAGCCTTTGCTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAG-AGGAGCCCTTTTC-AGATGAAA-TTTTAAA
* * * * * *
8466688 GTTATTGAGCTTTTGCTGAGAGGAGTCTTTTTCAGATTTTAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGA---TGAAATTTTAAA
* *
8466739 GTTGTTGAGCCTCTGTTGAGAGGAG-CTTTTTCAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGATGAAA-TTTTAAA
* * * *
8466787 GTCGTTGAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTC-AGATGA-AATTTTAAA
* * * *
8466837 GTTGTTGAGCCTCTGCTGAGAAGAGTCTTTTTCAGATTTTAAATTTTCAAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGA--TGAAATTTT--AAA
* * * *
8466889 GTTGTTAAGCCTCTGCTGAGATGAGTCCTTTTTCAGATTTTAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAG-CCCTTTTCAGA---TGAAATTTTAAA
* * *
8466941 GTTGTTGAGCCTATGTTGAGAGGAG-CTTTTTCAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGATGAAA-TTTTAAA
* * * *
8466989 GTCGTTGAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTC-AGATGA-AATTTTAAA
* * * *
8467039 GTTGTTGAGCCTCTGCTGAGAAGAGTCTTTTTCAGATTTTAAATTTTTAAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGA--TGAAA-TTTT-AAA
* * *
8467091 GTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTAAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCC-TTTTCAGATGAAA-TTTTAAA
* *
8467141 GTTGTTGAGCCTCTGATGAGAGGAGTCCTTTTCAGAT
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGAT
8467178 TTTAAATTTT
Statistics
Matches: 517, Mismatches: 84, Indels: 63
0.78 0.13 0.09
Matches are distributed among these distances:
45 8 0.02
46 53 0.10
47 32 0.06
48 60 0.12
49 31 0.06
50 156 0.30
51 70 0.14
52 80 0.15
53 17 0.03
54 10 0.02
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (48 bp):
GTTGTTGAGCCTCTGCTGAGAGGAGCCCTTTTCAGATGAAATTTTAAA
Found at i:8466948 original size:202 final size:201
Alignment explanation
Indices: 8466533--8467177 Score: 871
Period size: 202 Copynumber: 3.2 Consensus size: 201
8466523 CTTTTTCAAG
* * * * * **
8466533 AAAATTTTAAAGTAGTTGAGCCTCTATTAAGAAGAGCTTTTTCAAGATG-GA--TTTAAAGTTAT
1 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTC-AGATGAAATTTTTAAAGTCGT
* * * * * * * * *
8466595 TGAGCCTCTGCTGAGAGAAG--CTTTTCCAGAT-AAAATTTTAAAATCGTTGAGCCTTTGCTGAG
65 TGAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAG
* * * * * * *
8466657 AAGGAGCCCTTTTCAAGA--TGAAATTTTTAAAGTTATTGAGCTTTTGCTGAGAGGAGT-CTTTT
130 AA-GAGTCTTTTTC-AGATTTTAAATTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGTCCTTTT
8466719 TCAGATTTT
193 TCAGATTTT
8466728 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
1 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
8466793 GAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
66 GAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
* *
8466858 AGAGTCTTTTTCAGATTTTAAATTTTCAAAAGTTGTTAAGCCTCTGCTGAGATGAGTCCTTTTTC
131 AGAGTCTTTTTCAGATTTTAAATTTT-AAAAGTTGTTAAGCCTTTGCTGAGAGGAGTCCTTTTTC
8466923 AGATTTT
195 AGATTTT
*
8466930 AAAATTTTAAAGTTGTTGAGCCTATGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
1 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
8466995 GAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
66 GAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
* *
8467060 AGAGTCTTTTTCAGATTTTAAATTTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTA
131 AGAGTCTTTTTCAGATTTTAAA-TTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGTCCTTTTTC
*
8467125 AGA--TG
195 AGATTTT
* * *
8467130 AAATTTTTAAAGTTGTTGAGCCTCTGATGAGAGGAGTCCTTTTCAGAT
1 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAG-CTTTTTCAGAT
8467178 TTTAAATTTT
Statistics
Matches: 403, Mismatches: 35, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
194 5 0.01
195 40 0.10
197 26 0.06
198 3 0.01
199 19 0.05
200 70 0.17
201 34 0.08
202 202 0.50
203 4 0.01
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (201 bp):
AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
GAGCTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
AGAGTCTTTTTCAGATTTTAAATTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGTCCTTTTTCA
GATTTT
Found at i:8467187 original size:102 final size:99
Alignment explanation
Indices: 8466498--8467177 Score: 647
Period size: 102 Copynumber: 6.9 Consensus size: 99
8466488 AGAGGAGCTT
* * * * * *
8466498 GTTGTTGAACCTCTGTTGAGAGGAG-CTTTTTC-A-A-GAAAATTTTAAAGTAGTTGAGCCTCTA
1 GTTGTTGAGCCTTTGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTG
* * * *
8466559 TTAAGAAGAG-CTTTTTCAAGATG-GA--TTTAAA
66 CTGAGAGGAGTCTTTTTC-AGATGAAATTTTTAAA
* * * * * * *
8466590 GTTATTGAGCCTCTGCTGAGAGAAG--CTTTTCCAGAT-AAAATTTTAAAATCGTTGAGCCTTTG
1 GTTGTTGAGCCTTTGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTG
* *
8466652 CTGAGAAGGAGCCCTTTTCAAGATGAAATTTTTAAA
66 CTGAG-AGGAGTCTTTTTC-AGATGAAATTTTTAAA
* * * * *
8466688 GTTATTGAGCTTTTGCTGAGAGGAGTCTTTTTC-AGATTTTAAAATTTTAAAGTTGTTGAGCCTC
1 GTTGTTGAGCCTTTGCTGAGAGGAGCCCTTTTCAAGA--TGAAAATTTTAAAGTTGTTGAGCCTC
*
8466752 TGTTGAGAGGAG-CTTTTTCAGATGAAATTTTTAAA
64 TGCTGAGAGGAGTCTTTTTCAGATGAAATTTTTAAA
* * * *
8466787 GTCGTTGAG-CTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCT
1 GTTGTTGAGCCTT-TGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCT
* * *
8466851 GCTGAGAAGAGTCTTTTTCAGATTTTAAATTTTCAAAA
65 GCTGAGAGGAGTCTTTTTCAGA--TGAAATTTT-TAAA
* * * * *
8466889 GTTGTTAAGCCTCTGCTGAGATGAGTCCTTTTTC-AGATTTTAAAATTTTAAAGTTGTTGAGCCT
1 GTTGTTGAGCCTTTGCTGAGAGGAG-CCCTTTTCAAGA--TGAAAATTTTAAAGTTGTTGAGCCT
* *
8466953 ATGTTGAGAGGAG-CTTTTTCAGATGAAATTTTTAAA
63 CTGCTGAGAGGAGTCTTTTTCAGATGAAATTTTTAAA
* * * *
8466989 GTCGTTGAG-CTTCTGCTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCCTCT
1 GTTGTTGAGCCTT-TGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCT
* *
8467053 GCTGAGAAGAGTCTTTTTCAGATTTTAAATTTTTAAAA
65 GCTGAGAGGAGTCTTTTTCAGA--TGAAATTTTT-AAA
* * *
8467091 GTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTAAGATGAAATTTTTAAAGTTGTTGAGCCTCTG
1 GTTGTTGAGCCTTTGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTG
* *
8467156 ATGAGAGGAGTCCTTTTCAGAT
66 CTGAGAGGAGTCTTTTTCAGAT
8467178 TTTAAATTTT
Statistics
Matches: 487, Mismatches: 71, Indels: 52
0.80 0.12 0.09
Matches are distributed among these distances:
91 5 0.01
92 22 0.05
93 26 0.05
94 4 0.01
95 12 0.02
96 1 0.00
98 95 0.20
99 72 0.15
100 38 0.08
101 31 0.06
102 127 0.26
103 22 0.05
104 32 0.07
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (99 bp):
GTTGTTGAGCCTTTGCTGAGAGGAGCCCTTTTCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTG
CTGAGAGGAGTCTTTTTCAGATGAAATTTTTAAA
Found at i:8467438 original size:24 final size:24
Alignment explanation
Indices: 8467411--8467473 Score: 101
Period size: 24 Copynumber: 2.6 Consensus size: 24
8467401 AAATATTATT
8467411 AAATATAAAATACAAGAAAAATAC-
1 AAATATAAAATACAAG-AAAATACA
8467435 AAATATAAAATACAAGAAAATACA
1 AAATATAAAATACAAGAAAATACA
*
8467459 AAATACAAAATACAA
1 AAATATAAAATACAA
8467474 ATACCAACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
23 7 0.19
24 30 0.81
ACGTcount: A:0.71, C:0.10, G:0.03, T:0.16
Consensus pattern (24 bp):
AAATATAAAATACAAGAAAATACA
Found at i:8467461 original size:7 final size:7
Alignment explanation
Indices: 8467428--8467474 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
8467418 AAATACAAGA
8467428 AAAATAC
1 AAAATAC
*
8467435 -AAATAT
1 AAAATAC
8467441 AAAATAC
1 AAAATAC
8467448 AAGAAAATAC
1 ---AAAATAC
8467458 AAAATAC
1 AAAATAC
8467465 AAAATAC
1 AAAATAC
8467472 AAA
1 AAA
8467475 TACCAACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
6 5 0.15
7 22 0.65
10 7 0.21
ACGTcount: A:0.72, C:0.11, G:0.02, T:0.15
Consensus pattern (7 bp):
AAAATAC
Found at i:8468652 original size:20 final size:21
Alignment explanation
Indices: 8468619--8468658 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8468609 GTTAACATTT
*
8468619 AAAATGAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
8468640 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
8468659 TACCAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:8469232 original size:15 final size:15
Alignment explanation
Indices: 8469205--8469287 Score: 98
Period size: 15 Copynumber: 5.5 Consensus size: 15
8469195 AGATTATATA
*
8469205 TATTTTTT-TATTAC
1 TATTTTTTAGATTAC
8469219 TATTTTTTAGATTAC
1 TATTTTTTAGATTAC
*
8469234 TATTTTTTAGATTAT
1 TATTTTTTAGATTAC
*
8469249 TATTATTTT-TATTAC
1 TATT-TTTTAGATTAC
*
8469264 TATTTTTTAGATTAT
1 TATTTTTTAGATTAC
8469279 TATTATTTT
1 TATT-TTTT
8469288 TTAAGCATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.20
15 39 0.66
16 8 0.14
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (15 bp):
TATTTTTTAGATTAC
Found at i:8469263 original size:30 final size:30
Alignment explanation
Indices: 8469229--8469288 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
8469219 TATTTTTTAG
8469229 ATTACTATTTTTTAGATTATTATTATTTTT
1 ATTACTATTTTTTAGATTATTATTATTTTT
8469259 ATTACTATTTTTTAGATTATTATTATTTTT
1 ATTACTATTTTTTAGATTATTATTATTTTT
8469289 TAAGCATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (30 bp):
ATTACTATTTTTTAGATTATTATTATTTTT
Found at i:8469267 original size:45 final size:48
Alignment explanation
Indices: 8469195--8469287 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 48
8469185 TTCGAGGATG
*
8469195 AGATTATATATATTTTTTTATTACTATTTTTTAGATTACTATT-TTTT
1 AGATTATATATATATTTTTATTACTATTTTTTAGATTACTATTATTTT
*
8469242 AGATTAT-TAT-TATTTTTATTACTATTTTTTAGATTATTATTATTTT
1 AGATTATATATATATTTTTATTACTATTTTTTAGATTACTATTATTTT
8469288 TTAAGCATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
45 29 0.67
46 7 0.16
47 7 0.16
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (48 bp):
AGATTATATATATATTTTTATTACTATTTTTTAGATTACTATTATTTT
Found at i:8469712 original size:23 final size:25
Alignment explanation
Indices: 8469630--8469715 Score: 79
Period size: 24 Copynumber: 3.5 Consensus size: 25
8469620 GGGTTGGCGG
* * *
8469630 GTCTCCCATGCCTAA-AAATCCTAA
1 GTCTCCCATGCCCAAGAAACCCCAA
*
8469654 GTCTCTCAGATGCCCAAGAAACCCCAA
1 GTCTC-C-CATGCCCAAGAAACCCCAA
* *
8469681 GTCTCCCATGCCC-AGAAACCTCTA
1 GTCTCCCATGCCCAAGAAACCCCAA
8469705 G-CTCCCATGCC
1 GTCTCCCATGCC
8469716 ACAACAACCC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
23 10 0.19
24 15 0.29
25 7 0.13
26 8 0.15
27 12 0.23
ACGTcount: A:0.28, C:0.40, G:0.13, T:0.20
Consensus pattern (25 bp):
GTCTCCCATGCCCAAGAAACCCCAA
Found at i:8470524 original size:3 final size:3
Alignment explanation
Indices: 8470518--8470566 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
8470508 TGTTGTTTTG
* * *
8470518 TAA TAA TAA TTAA TAA TAA TAA TGA TAA TAA CAA CAA TAA TAA -AA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8470563 TAA T
1 TAA T
8470567 GATTTCAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8471016 original size:14 final size:14
Alignment explanation
Indices: 8470967--8471048 Score: 60
Period size: 14 Copynumber: 5.7 Consensus size: 14
8470957 TAAACCCTTT
*
8470967 AAACCCTAAAATCA
1 AAACCTTAAAATCA
* **
8470981 AAATCTTAAACATTTT
1 AAACCTTAAA-A-TCA
8470997 AAACCTTAAAATCA
1 AAACCTTAAAATCA
*
8471011 AAACCTT-AAATCCC
1 AAACCTTAAAAT-CA
8471025 AAA-CTCTAAAATCA
1 AAACCT-TAAAATCA
*
8471039 AAACCCTAAA
1 AAACCTTAAA
8471049 CCCCAAACCC
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
13 6 0.12
14 29 0.56
15 7 0.13
16 10 0.19
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCTTAAAATCA
Found at i:8471037 original size:28 final size:28
Alignment explanation
Indices: 8470935--8471062 Score: 96
Period size: 30 Copynumber: 4.4 Consensus size: 28
8470925 TCAAAACCCT
* *
8470935 CCAAACACTAAAA-CTAAAACCTTAAACC
1 CCAAACCCTAAAATC-AAAACCCTAAACC
* * * *
8470963 CTTTAAACCCTAAAATCAAAATCTTAAACATT
1 C--CAAACCCTAAAATCAAAACCCTAAAC--C
** * * *
8470995 TTAAACCTTAAAATCAAAACCTTAAATC
1 CCAAACCCTAAAATCAAAACCCTAAACC
*
8471023 CCAAACTCTAAAATCAAAACCCTAAACC
1 CCAAACCCTAAAATCAAAACCCTAAACC
8471051 CCAAACCCTAAA
1 CCAAACCCTAAA
8471063 CCCTAAAACT
Statistics
Matches: 79, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
28 34 0.43
30 44 0.56
31 1 0.01
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (28 bp):
CCAAACCCTAAAATCAAAACCCTAAACC
Found at i:8471056 original size:14 final size:14
Alignment explanation
Indices: 8471011--8471065 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
8471001 CTTAAAATCA
* *
8471011 AAACCTTAAATCCC
1 AAACCCTAAACCCC
* ** *
8471025 AAACTCTAAAATCA
1 AAACCCTAAACCCC
8471039 AAACCCTAAACCCC
1 AAACCCTAAACCCC
8471053 AAACCCTAAACCC
1 AAACCCTAAACCC
8471066 TAAAACTAAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCCTAAACCCC
Found at i:8471077 original size:21 final size:21
Alignment explanation
Indices: 8471039--8471085 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8471029 TCTAAAATCA
* *
8471039 AAACCCTAAACCCCAAACCCT
1 AAACCCTAAAACCAAAACCCT
* *
8471060 AAACCCTAAAACTAAAACCTT
1 AAACCCTAAAACCAAAACCCT
8471081 AAACC
1 AAACC
8471086 TCCAAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.38, G:0.00, T:0.13
Consensus pattern (21 bp):
AAACCCTAAAACCAAAACCCT
Found at i:8471086 original size:7 final size:7
Alignment explanation
Indices: 8471039--8471069 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8471029 TCTAAAATCA
8471039 AAACCCT
1 AAACCCT
*
8471046 AAACCCC
1 AAACCCT
8471053 AAACCCT
1 AAACCCT
8471060 AAACCCT
1 AAACCCT
8471067 AAA
1 AAA
8471070 ACTAAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.48, C:0.42, G:0.00, T:0.10
Consensus pattern (7 bp):
AAACCCT
Found at i:8471157 original size:8 final size:8
Alignment explanation
Indices: 8471146--8471238 Score: 56
Period size: 8 Copynumber: 12.4 Consensus size: 8
8471136 TCCTAAAATA
8471146 AAAACCCT
1 AAAACCCT
*
8471154 AAAA-ACT
1 AAAACCCT
8471161 GAAAACCCT
1 -AAAACCCT
8471170 AAAA-CCT
1 AAAACCCT
*
8471177 TAAACCCT
1 AAAACCCT
* *
8471185 CAAA--TT
1 AAAACCCT
8471191 AAAACCCT
1 AAAACCCT
8471199 AAAA-CCT
1 AAAACCCT
*
8471206 TAAACCCT
1 AAAACCCT
* *
8471214 CAAA--TT
1 AAAACCCT
*
8471220 AAAAGCCT
1 AAAACCCT
8471228 AAAACCCT
1 AAAACCCT
8471236 AAA
1 AAA
8471239 CCTCAAAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
6 8 0.12
7 14 0.22
8 40 0.62
9 2 0.03
ACGTcount: A:0.52, C:0.29, G:0.02, T:0.17
Consensus pattern (8 bp):
AAAACCCT
Found at i:8471173 original size:15 final size:14
Alignment explanation
Indices: 8471060--8471232 Score: 82
Period size: 14 Copynumber: 11.9 Consensus size: 14
8471050 CCCAAACCCT
8471060 AAACCCTAAAACTA
1 AAACCCTAAAACTA
* * *
8471074 AAACCTTAAACCTCC
1 AAACCCTAAAACT-A
* *
8471089 AAA-TCAAAATACTA
1 AAACCCTAAA-ACTA
* *
8471103 AAACCCTAAACCTTTT
1 AAACCCTAAAAC--TA
**
8471119 AAACAATAAAA-TCA
1 AAACCCTAAAACT-A
*
8471133 AAATCCTAAAA-TAA
1 AAACCCTAAAACT-A
8471147 AAACCCTAAAAACTGA
1 AAACCCT-AAAACT-A
*
8471163 AAACCCTAAAACCTT
1 AAACCCTAAAA-CTA
* *
8471178 AAACCCTCAAATTA
1 AAACCCTAAAACTA
*
8471192 AAACCCTAAAACCTT
1 AAACCCTAAAA-CTA
* *
8471207 AAACCCTCAAATTA
1 AAACCCTAAAACTA
*
8471221 AAAGCCTAAAAC
1 AAACCCTAAAAC
8471233 CCTAAACCTC
Statistics
Matches: 114, Mismatches: 35, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
13 1 0.01
14 55 0.48
15 38 0.33
16 20 0.18
ACGTcount: A:0.53, C:0.27, G:0.01, T:0.19
Consensus pattern (14 bp):
AAACCCTAAAACTA
Found at i:8471197 original size:29 final size:29
Alignment explanation
Indices: 8471162--8471245 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
8471152 CTAAAAACTG
8471162 AAAACCCTAAAACCTTAAACCCTCAAATT
1 AAAACCCTAAAACCTTAAACCCTCAAATT
8471191 AAAACCCTAAAACCTTAAACCCTCAAATT
1 AAAACCCTAAAACCTTAAACCCTCAAATT
* *
8471220 AAAAGCCTAAAACCCTAAA-CCTCAAA
1 AAAACCCTAAAACCTTAAACCCTCAAA
8471246 AAAATTAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
28 7 0.13
29 46 0.87
ACGTcount: A:0.50, C:0.31, G:0.01, T:0.18
Consensus pattern (29 bp):
AAAACCCTAAAACCTTAAACCCTCAAATT
Found at i:8475290 original size:21 final size:21
Alignment explanation
Indices: 8475251--8475290 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8475241 ATTTCACAAT
8475251 ATAATATAATTTTTAAATTAA
1 ATAATATAATTTTTAAATTAA
*
8475272 ATAA-ATATTTTTTATAATT
1 ATAATATAATTTTTA-AATT
8475291 GATTTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATAATATAATTTTTAAATTAA
Found at i:8477106 original size:20 final size:20
Alignment explanation
Indices: 8477071--8477129 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
8477061 ATATATTTTC
* *
8477071 ATAATTTACATGTTAAATAA
1 ATAAATTACATATTAAATAA
*
8477091 ATAAATTATATATTAAATAA
1 ATAAATTACATATTAAATAA
* *
8477111 ATAATTTACATTTTAAATA
1 ATAAATTACATATTAAATA
8477130 TATTATATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAAATTACATATTAAATAA
Found at i:8482157 original size:28 final size:28
Alignment explanation
Indices: 8482117--8482172 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8482107 TATCTGATTC
* *
8482117 CTATGTCTTGAGTGTTTTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8482145 CTATGTCTTGAGTATTGTTCATTAGTAA
1 CTATGTCTTGAGTATTGTTCATTAGTAA
8482173 TTTAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (28 bp):
CTATGTCTTGAGTATTGTTCATTAGTAA
Found at i:8483817 original size:16 final size:16
Alignment explanation
Indices: 8483796--8483915 Score: 79
Period size: 16 Copynumber: 7.7 Consensus size: 16
8483786 AATTTAAGAG
8483796 TTTGGATTTTAGAGAT
1 TTTGGATTTTAGAGAT
*
8483812 TTTGGATTTT-GAG-G
1 TTTGGATTTTAGAGAT
* *
8483826 TTTGGATTTTAGGGGT
1 TTTGGATTTTAGAGAT
* *
8483842 TTCGGATTTTAGGGA-
1 TTTGGATTTTAGAGAT
* *
8483857 TTT-GAATTTAGGGGAT
1 TTTGGATTTTA-GAGAT
* *
8483873 TTTAGATTTTTAGAGGT
1 TTTGGA-TTTTAGAGAT
**
8483890 TTCAGATTTTAG-GAT
1 TTTGGATTTTAGAGAT
*
8483905 TTTAGATTTTA
1 TTTGGATTTTA
8483916 AAAGTTTTAG
Statistics
Matches: 85, Mismatches: 13, Indels: 13
0.77 0.12 0.12
Matches are distributed among these distances:
14 16 0.19
15 23 0.27
16 32 0.38
17 10 0.12
18 4 0.05
ACGTcount: A:0.22, C:0.02, G:0.28, T:0.49
Consensus pattern (16 bp):
TTTGGATTTTAGAGAT
Found at i:8483829 original size:30 final size:30
Alignment explanation
Indices: 8483795--8483914 Score: 102
Period size: 30 Copynumber: 3.9 Consensus size: 30
8483785 TAATTTAAGA
* *
8483795 GTTTGGATTTTAGAGATTTTGGATTTTGAG
1 GTTTGGATTTTAGGGATTTTAGATTTTGAG
* **
8483825 GTTTGGATTTTAGGGGTTTCGGATTTT-AGG
1 GTTTGGATTTTAGGGATTTTAGATTTTGA-G
*
8483855 GATTT-GAATTTAGGGGATTTTAGATTTTTAGAG
1 G-TTTGGATTTTA-GGGATTTTAGA-TTTT-GAG
*
8483888 GTTTCAGATTTTA-GGATTTTAGATTTT
1 GTTT-GGATTTTAGGGATTTTAGATTTT
8483915 AAAAGTTTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
29 1 0.01
30 32 0.43
31 15 0.20
32 17 0.23
33 2 0.03
34 7 0.09
ACGTcount: A:0.21, C:0.02, G:0.28, T:0.49
Consensus pattern (30 bp):
GTTTGGATTTTAGGGATTTTAGATTTTGAG
Found at i:8483925 original size:16 final size:16
Alignment explanation
Indices: 8483872--8483926 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
8483862 ATTTAGGGGA
*
8483872 TTTTAGATTTTTAGAGG
1 TTTTAGA-TTTTAGAAG
* *
8483889 TTTCAGATTTTAGGA-
1 TTTTAGATTTTAGAAG
*
8483904 TTTTAGATTTTAAAAG
1 TTTTAGATTTTAGAAG
8483920 TTTTAGA
1 TTTTAGA
8483927 AACCTATGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 12 0.39
16 13 0.42
17 6 0.19
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (16 bp):
TTTTAGATTTTAGAAG
Found at i:8484356 original size:16 final size:16
Alignment explanation
Indices: 8484337--8484377 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
8484327 ATAATAATAT
*
8484337 ATAAAAAATTTAGAAA
1 ATAAAAAATTTAAAAA
8484353 AT--AAAATTTAAAAA
1 ATAAAAAATTTAAAAA
*
8484367 AAAAAAAATTT
1 ATAAAAAATTT
8484378 TTTTTACCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
ATAAAAAATTTAAAAA
Found at i:8485304 original size:20 final size:20
Alignment explanation
Indices: 8485266--8485304 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8485256 CACCAGCCAC
*
8485266 CCTACTTTCTATTTTTTTTT
1 CCTACTTTCTATTTCTTTTT
* *
8485286 CCTATTTTCTCTTTCTTTT
1 CCTACTTTCTATTTCTTTT
8485305 CTTTTCTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (20 bp):
CCTACTTTCTATTTCTTTTT
Found at i:8485797 original size:110 final size:108
Alignment explanation
Indices: 8485574--8485920 Score: 399
Period size: 110 Copynumber: 3.2 Consensus size: 108
8485564 GTGATCGAAT
* ** * * ** * *
8485574 TTATGCCCGGAGGTCTTAGAGATCATGCTTGGAAGTTTTACAGAATCGACAGGACAACACCGTAA
1 TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATGGGATAACA-CGCAA
* * *
8485639 GTCAAAAAATCAATAATCGATCAGGATAATACCGCGAATCAAAT
65 GTCAAAAGATCAAGAATCGATCAGGATAATACCGCGAATCAAAA
*
8485683 TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGATTCGATTGGGATAACATCGCA
1 TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGA-TGGGATAACA-CGCA
* *
8485748 AGTCAAAAGATCAAGAATCAATCGGGATAATACCGCGAATCAAAA
64 AGTCAAAAGATCAAGAATCGATCAGGATAATACCGCGAATCAAAA
* ** * *
8485793 TTATGCCCGGAGGTCTTAAAAATCATATCCGAAGGTCTTATAGAATCGACTGGGATAACACTGCA
1 TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGA-TGGGATAACAC-GCA
** * *
8485858 AGTTGAAAGAT-AAGGAATCGATCAGGATAACACCGCGAATCGAAA
64 AGTCAAAAGATCAA-GAATCGATCAGGATAATACCGCGAATCAAAA
* *
8485903 TTATGCTCGAAGGTCTTA
1 TTATGCCCGGAGGTCTTA
8485921 CAGAATCGAC
Statistics
Matches: 204, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
109 46 0.23
110 158 0.77
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (108 bp):
TTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATGGGATAACACGCAAG
TCAAAAGATCAAGAATCGATCAGGATAATACCGCGAATCAAAA
Found at i:8485933 original size:88 final size:87
Alignment explanation
Indices: 8485822--8485993 Score: 265
Period size: 88 Copynumber: 2.0 Consensus size: 87
8485812 AAATCATATC
* *
8485822 CGAAGGTCTTATAGAATCGACTGGGATAACA-CTGCAAGTTGAAAGATAAGGAATCGATCAGGAT
1 CGAAGGTCTTACAGAATCGACTGGGATAACATC-GCAAGTTAAAAGATAAGGAATCGATC-GGAT
*
8485886 AACACCGCGAATCGAAATTATGCT
64 AACACCGCGAATCAAAATTATGCT
*
8485910 CGAAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGGAATCGATCGGATAA
1 CGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTTAAAAGATAAGGAATCGATCGGATAA
* *
8485975 CATCGTGAATCAAAATTAT
66 CACCGCGAATCAAAATTAT
8485994 ACCTGAAGGT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
87 22 0.29
88 54 0.70
89 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (87 bp):
CGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTTAAAAGATAAGGAATCGATCGGATAA
CACCGCGAATCAAAATTATGCT
Found at i:8486066 original size:197 final size:198
Alignment explanation
Indices: 8485701--8486117 Score: 545
Period size: 197 Copynumber: 2.1 Consensus size: 198
8485691 GGAGGTCTTA
* * * *
8485701 GAAATCATGCCCGGAGGTCTTACAGATTCGATTGGGATAACATCGCAAGTCAAAAGATCAAGAAT
1 GAAATTATGCCCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATCAAGAAT
* * *
8485766 CAATCGGGATAATACCGCGAATCAAAATTATGCCCGGAGGTCTTAAAAATCATATCCGAAGGTCT
66 CAATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAAAAATCATATCCGAAGGTCT
* ** * *
8485831 TATAGAATCGACTGGGATAACACTGCAAGTTGAAAGATAAGGAATCGATCAGGATAACACCGCGA
131 TACAGAATCGACTGGGATAACACTGCAAGTCAAAAGATAAAGAATCGATCAGGATAACACCACGA
8485896 ATC
196 ATC
* * *
8485899 GAAATTATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGAT-AAGGAA
1 GAAATTATGCCCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATCAA-GAA
* * * * * * *
8485963 TCGATC-GGATAACATCGTGAATCAAAATTATACCTGAAGGTTTTAGAAATCATGTCCGAAGGTC
65 TCAATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAAAAATCATATCCGAAGGTC
* * *
8486027 TTACAGAATCGATTGGGATAATA-TCGCAAGTCAAAAGATAAAGAATCGATCGGGATAACACCAC
130 TTACAGAATCGACTGGGATAACACT-GCAAGTCAAAAGATAAAGAATCGATCAGGATAACACCAC
8486091 GAATC
194 GAATC
*
8486096 AAAATTATGCCC-AGAGGTCTTA
1 GAAATTATGCCCGA-AGGTCTTA
8486118 AAAATCATGC
Statistics
Matches: 189, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
196 2 0.01
197 128 0.68
198 59 0.31
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (198 bp):
GAAATTATGCCCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATCAAGAAT
CAATCGGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAAAAATCATATCCGAAGGTCT
TACAGAATCGACTGGGATAACACTGCAAGTCAAAAGATAAAGAATCGATCAGGATAACACCACGA
ATC
Found at i:8486127 original size:22 final size:23
Alignment explanation
Indices: 8486095--8486146 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
8486085 CACCACGAAT
*
8486095 CAAAATTATGCCC-AGAGGTCTTA
1 CAAAATCATGCCCGA-AGGTCTTA
8486118 -AAAATCATGCCCGAAGGTCTTA
1 CAAAATCATGCCCGAAGGTCTTA
8486140 CAAAATC
1 CAAAATC
8486147 GATTGGGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (23 bp):
CAAAATCATGCCCGAAGGTCTTA
Found at i:8486175 original size:307 final size:308
Alignment explanation
Indices: 8485653--8486213 Score: 838
Period size: 307 Copynumber: 1.8 Consensus size: 308
8485643 AAAAATCAAT
* * * * *
8485653 AATCGATCAGGATAATACCGCGAATCAAATTTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGG
1 AATCGATCAGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAGAAATCATGCCCGAAGG
* * * *
8485718 TCTTACAGATTCGATTGGGATAACATCGCAAGTCAAAAGATCAAGAATCAATCGGGATAATACCG
66 TCTTACAGAATCGATTGGGATAACATCGCAAGTCAAAAGATAAAGAATCAATCGGGATAACACCA
* * * *
8485783 CGAATCAAAATTATGCCCGGAGGTCTTAAAAATCATATCCGAAGGTCTTATAGAATCGACTGGGA
131 CGAATCAAAATTATGCCCAGAGGTCTTAAAAATCATACCCGAAGGTCTTACAAAATCGACTGGGA
* * * * *
8485848 TAACACTGCAAGTTGAAAGATAAGGAATCGATCAGGATAACACCGCGAATCGAAATTATGCTCGA
196 CAACACTGCAAGTCGAAAGATAAGGAATCAATCAGGATAACACCACGAATCAAAATTATGCTCGA
8485913 AGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGG
261 AGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGG
* * * * *
8485961 AATCGATC-GGATAACATCGTGAATCAAAATTATACCTGAAGGTTTTAGAAATCATGTCCGAAGG
1 AATCGATCAGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAGAAATCATGCCCGAAGG
* *
8486025 TCTTACAGAATCGATTGGGATAATATCGCAAGTCAAAAGATAAAGAATCGATCGGGATAACACCA
66 TCTTACAGAATCGATTGGGATAACATCGCAAGTCAAAAGATAAAGAATCAATCGGGATAACACCA
* *
8486090 CGAATCAAAATTATGCCCAGAGGTCTTAAAAATCATGCCCGAAGGTCTTACAAAATCGATTGGGA
131 CGAATCAAAATTATGCCCAGAGGTCTTAAAAATCATACCCGAAGGTCTTACAAAATCGACTGGGA
* *
8486155 CAACA-TCGCGAGTCGAAAGATAAGGAATCAATCGGGATAACACCACGAATCAAAATTAT
196 CAACACT-GCAAGTCGAAAGATAAGGAATCAATCAGGATAACACCACGAATCAAAATTAT
8486214 CCCCGAAGAT
Statistics
Matches: 223, Mismatches: 29, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
306 1 0.00
307 214 0.96
308 8 0.04
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.22
Consensus pattern (308 bp):
AATCGATCAGGATAACACCGCGAATCAAAATTATACCCGAAGGTCTTAGAAATCATGCCCGAAGG
TCTTACAGAATCGATTGGGATAACATCGCAAGTCAAAAGATAAAGAATCAATCGGGATAACACCA
CGAATCAAAATTATGCCCAGAGGTCTTAAAAATCATACCCGAAGGTCTTACAAAATCGACTGGGA
CAACACTGCAAGTCGAAAGATAAGGAATCAATCAGGATAACACCACGAATCAAAATTATGCTCGA
AGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGG
Found at i:8486291 original size:220 final size:219
Alignment explanation
Indices: 8485900--8486328 Score: 583
Period size: 220 Copynumber: 2.0 Consensus size: 219
8485890 CCGCGAATCG
* * * * *
8485900 AAATTATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGGAATC
1 AAATCATGCCCGAAGGTCTTACAAAATCGACTGGGACAACATCGCGAGTCAAAAGATAAGGAATC
* * ** * *
8485965 GATCGGATAACATCGTGAATCAAAATTATACCTGAAGGTTTTAGAAATCATGTCCGAAGGTCTTA
66 AATCGGATAACACCACGAATCAAAATTATACCCGAAGATTTTAGAAATCATGTCCGAAGGTCTTA
* * * * * * *
8486030 CAGAATCGATTGGGATAATATCGCAAGTCAAAAGATAAAGAATCGATCGGGATAACACCACGAAT
131 CAGAATCGACTGAGATAACACCGAAAATCAAAAGATAAAGAATCGATCGGAATAACACCACGAAT
*
8486095 CAAAATTATGCCCAGAGGTCTTAA
196 CAAAATTATACCCAGAGGTCTTAA
* *
8486119 AAATCATGCCCGAAGGTCTTACAAAATCGATTGGGACAACATCGCGAGTCGAAAGATAAGGAATC
1 AAATCATGCCCGAAGGTCTTACAAAATCGACTGGGACAACATCGCGAGTCAAAAGATAAGGAATC
* *
8486184 AATCGGGATAACACCACGAATCAAAATTATCCCCGAAGATTTTAGAAATCATG-CTCGGAGGTCT
66 AATC-GGATAACACCACGAATCAAAATTATACCCGAAGATTTTAGAAATCATGTC-CGAAGGTCT
* **
8486248 TACAGAATCGACTGAGATAACACCATAAAAT-AAAAGATAAAGAATCGATCGGAATAACACCGTG
129 TACAGAATCGACTGAGATAACACC-GAAAATCAAAAGATAAAGAATCGATCGGAATAACACCACG
8486312 AATCAAAATTATACCCA
193 AATCAAAATTATACCCA
8486329 AAGATCTTGA
Statistics
Matches: 181, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
219 62 0.34
220 116 0.64
221 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (219 bp):
AAATCATGCCCGAAGGTCTTACAAAATCGACTGGGACAACATCGCGAGTCAAAAGATAAGGAATC
AATCGGATAACACCACGAATCAAAATTATACCCGAAGATTTTAGAAATCATGTCCGAAGGTCTTA
CAGAATCGACTGAGATAACACCGAAAATCAAAAGATAAAGAATCGATCGGAATAACACCACGAAT
CAAAATTATACCCAGAGGTCTTAA
Found at i:8486333 original size:110 final size:110
Alignment explanation
Indices: 8485899--8486333 Score: 507
Period size: 110 Copynumber: 4.0 Consensus size: 110
8485889 ACCGCGAATC
* * * *
8485899 GAAATTATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCGAGTTAAAAGATAAGGAAT
1 GAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATAAAGAAT
* ** ** *
8485964 CGATC-GGATAACATCGTGAATCAAAATTATACCTGAAGGTTTTA
66 CGATCGGGATAACACCACGAATCAAAATTATACCCAAAGATTTTA
* *
8486008 GAAATCATG-TCCGAAGGTCTTACAGAATCGATTGGGATAATATCGCAAGTCAAAAGATAAAGAA
1 GAAATCATGCT-CGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATAAAGAA
* * * *
8486072 TCGATCGGGATAACACCACGAATCAAAATTATGCCCAGAGGTCTTA
65 TCGATCGGGATAACACCACGAATCAAAATTATACCCAAAGATTTTA
* * * * * * * *
8486118 AAAATCATGCCCGAAGGTCTTACAAAATCGATTGGGACAACATCGCGAGTCGAAAGATAAGGAAT
1 GAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATAAAGAAT
* * *
8486183 CAATCGGGATAACACCACGAATCAAAATTATCCCCGAAGATTTTA
66 CGATCGGGATAACACCACGAATCAAAATTATACCCAAAGATTTTA
* * * ** *
8486228 GAAATCATGCTCGGAGGTCTTACAGAATCGACTGAGATAACACCATAAAAT-AAAAGATAAAGAA
1 GAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATC-GCAAGTCAAAAGATAAAGAA
* **
8486292 TCGATCGGAATAACACCGTGAATCAAAATTATACCCAAAGAT
65 TCGATCGGGATAACACCACGAATCAAAATTATACCCAAAGAT
8486334 CTTGAAAGTT
Statistics
Matches: 274, Mismatches: 48, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
108 1 0.00
109 62 0.23
110 209 0.76
111 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (110 bp):
GAAATCATGCTCGAAGGTCTTACAGAATCGACTGGGATAACATCGCAAGTCAAAAGATAAAGAAT
CGATCGGGATAACACCACGAATCAAAATTATACCCAAAGATTTTA
Found at i:8486392 original size:23 final size:23
Alignment explanation
Indices: 8486374--8486434 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
8486364 TTATGCCCAA
8486374 AGGTCTTACAGAATCATGCCCGG
1 AGGTCTTACAGAATCATGCCCGG
* **
8486397 AGGTCCTACAGAATCATGTTCGG
1 AGGTCTTACAGAATCATGCCCGG
8486420 AGGTCTTACAGAATC
1 AGGTCTTACAGAATC
8486435 GACTGGGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (23 bp):
AGGTCTTACAGAATCATGCCCGG
Found at i:8488199 original size:16 final size:16
Alignment explanation
Indices: 8488162--8488198 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
8488152 TCAAGGTACA
8488162 TATTTTCTCTTTTTTT
1 TATTTTCTCTTTTTTT
8488178 TATTTTCT-TTTTTTT
1 TATTTTCTCTTTTTTT
8488193 TATTTT
1 TATTTT
8488199 TTATTCTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (16 bp):
TATTTTCTCTTTTTTT
Found at i:8488628 original size:10 final size:10
Alignment explanation
Indices: 8488615--8488652 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
8488605 AATTTTTCCT
*
8488615 CTTTTTTTAA
1 CTTTTTTTTA
8488625 CTTTTTTTTA
1 CTTTTTTTTA
*
8488635 TTTTTTTTTA
1 CTTTTTTTTA
8488645 -TTTTTTTT
1 CTTTTTTTT
8488653 GTGTGATGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (10 bp):
CTTTTTTTTA
Found at i:8494019 original size:16 final size:15
Alignment explanation
Indices: 8493936--8494089 Score: 110
Period size: 16 Copynumber: 10.5 Consensus size: 15
8493926 ATATGGAAGG
8493936 TTTAGGGTTTT-GAT
1 TTTAGGGTTTTGGAT
* *
8493950 TTTAGAGTTTGGAGAT
1 TTTAGGGTTTTG-GAT
*
8493966 TTTAGGG-TTTGGGT
1 TTTAGGGTTTTGGAT
*
8493980 TTT-GTGGTTTAGGA-
1 TTTAG-GGTTTTGGAT
8493994 ---AGGG-TTTGGAT
1 TTTAGGGTTTTGGAT
8494005 TTTAGGGATTTTGGAT
1 TTTAGGG-TTTTGGAT
*
8494021 TTT-GGGGTTTGGAT
1 TTTAGGGTTTTGGAT
*
8494035 TTTAGGGGTTTCGGAT
1 TTTA-GGGTTTTGGAT
*
8494051 TTTAGGGGTTTGGAT
1 TTTAGGGTTTTGGAT
* *
8494066 TTAAGGGATTTTAGATT
1 TTTAGGG-TTTTGGA-T
8494083 TTTAGGG
1 TTTAGGG
8494090 GTTTCGAATT
Statistics
Matches: 108, Mismatches: 17, Indels: 27
0.71 0.11 0.18
Matches are distributed among these distances:
10 5 0.05
11 2 0.02
12 1 0.01
13 1 0.01
14 30 0.28
15 25 0.23
16 37 0.34
17 7 0.06
ACGTcount: A:0.16, C:0.01, G:0.36, T:0.47
Consensus pattern (15 bp):
TTTAGGGTTTTGGAT
Found at i:8494062 original size:31 final size:31
Alignment explanation
Indices: 8493995--8494102 Score: 146
Period size: 30 Copynumber: 3.5 Consensus size: 31
8493985 GGTTTAGGAA
8493995 GGGTTTGGATTTTAGGGATTTTGGATTTT-G
1 GGGTTTGGATTTTAGGGATTTTGGATTTTAG
* *
8494025 GGGTTTGGATTTTAGGGGTTTCGGATTTTAG
1 GGGTTTGGATTTTAGGGATTTTGGATTTTAG
* *
8494056 GGGTTTGGATTTAAGGGATTTTAGATTTTTAG
1 GGGTTTGGATTTTAGGGATTTTGGA-TTTTAG
*
8494088 GGGTTTCGAATTTTA
1 GGGTTT-GGATTTTA
8494103 AGAGTTTAGG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
30 27 0.40
31 22 0.33
32 12 0.18
33 6 0.09
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (31 bp):
GGGTTTGGATTTTAGGGATTTTGGATTTTAG
Found at i:8494102 original size:16 final size:15
Alignment explanation
Indices: 8493995--8494093 Score: 119
Period size: 16 Copynumber: 6.4 Consensus size: 15
8493985 GGTTTAGGAA
8493995 GGGTTTGGATTTTAG
1 GGGTTTGGATTTTAG
*
8494010 GGATTTTGGATTTT-G
1 GG-GTTTGGATTTTAG
8494025 GGGTTTGGATTTTAG
1 GGGTTTGGATTTTAG
8494040 GGGTTTCGGATTTTAG
1 GGGTTT-GGATTTTAG
*
8494056 GGGTTTGGATTTAAG
1 GGGTTTGGATTTTAG
* *
8494071 GGATTTTAGATTTTTAG
1 GG-GTTTGGA-TTTTAG
8494088 GGGTTT
1 GGGTTT
8494094 CGAATTTTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
14 10 0.14
15 22 0.31
16 33 0.46
17 7 0.10
ACGTcount: A:0.15, C:0.01, G:0.36, T:0.47
Consensus pattern (15 bp):
GGGTTTGGATTTTAG
Found at i:8494111 original size:32 final size:31
Alignment explanation
Indices: 8494020--8494111 Score: 73
Period size: 32 Copynumber: 2.9 Consensus size: 31
8494010 GGATTTTGGA
* * * *
8494020 TTTT-GGGGTTTGGATTTTAGGGGTTTCGGA-
1 TTTTAGGGGTTTGAATTTAAGGAGTTT-AGAT
* *
8494050 TTTTAGGGGTTTGGATTTAAGGGATTTTAGAT
1 TTTTAGGGGTTTGAATTTAA-GGAGTTTAGAT
8494082 TTTTAGGGGTTTCGAATTTTAA-GAGTTTAG
1 TTTTAGGGGTTT-GAA-TTTAAGGAGTTTAG
8494112 GTGCGACTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
30 4 0.08
31 16 0.31
32 24 0.47
33 2 0.04
34 5 0.10
ACGTcount: A:0.18, C:0.02, G:0.33, T:0.47
Consensus pattern (31 bp):
TTTTAGGGGTTTGAATTTAAGGAGTTTAGAT
Found at i:8494479 original size:16 final size:16
Alignment explanation
Indices: 8494458--8494488 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8494448 TTAGGGTTTT
8494458 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8494474 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8494489 GTTTTGTGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8494524 original size:51 final size:50
Alignment explanation
Indices: 8494445--8494551 Score: 128
Period size: 51 Copynumber: 2.1 Consensus size: 50
8494435 GGATATGGAA
* * * *
8494445 GGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAGGG-TTTGGGTTTTGT
1 GGTTTAGGGTTTTGATTTAAGAGGTT-G-GATTTTAGGGATTTGGATTTTGG
8494496 GGTTTAGGGTTTTGATTTAA-AGGGTTGGATTTTAGGGATTTTGGATTTTGG
1 GGTTTAGGGTTTTGATTTAAGA-GGTTGGATTTTAGGGA-TTTGGATTTTGG
8494547 GGTTT
1 GGTTT
8494552 GGATTTTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
49 10 0.20
50 2 0.04
51 37 0.76
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.50
Consensus pattern (50 bp):
GGTTTAGGGTTTTGATTTAAGAGGTTGGATTTTAGGGATTTGGATTTTGG
Found at i:8494541 original size:16 final size:15
Alignment explanation
Indices: 8494498--8494605 Score: 107
Period size: 16 Copynumber: 7.2 Consensus size: 15
8494488 GGTTTTGTGG
8494498 TTTAGGGTTTT-GAT
1 TTTAGGGTTTTGGAT
*
8494512 TTAAAGGG--TTGGAT
1 TT-TAGGGTTTTGGAT
8494526 TTTAGGGATTTTGGAT
1 TTTAGGG-TTTTGGAT
*
8494542 TTT-GGGGTTTGGAT
1 TTTAGGGTTTTGGAT
8494556 TTTAGGGGTTTTGGAT
1 TTTA-GGGTTTTGGAT
*
8494572 TTTAGGGGTTTGGAT
1 TTTAGGGTTTTGGAT
* *
8494587 TTAAGGGATTTTAGAT
1 TTTAGGG-TTTTGGAT
8494603 TTT
1 TTT
8494606 TAGTGGTTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
13 6 0.08
14 17 0.22
15 23 0.30
16 31 0.40
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (15 bp):
TTTAGGGTTTTGGAT
Found at i:8494543 original size:30 final size:30
Alignment explanation
Indices: 8494498--8494604 Score: 130
Period size: 30 Copynumber: 3.6 Consensus size: 30
8494488 GGTTTTGTGG
*
8494498 TTTAGGG-TTTT-GATTTAAAGGG-TTGGAT
1 TTTAGGGATTTTGGATTT-AGGGGTTTGGAT
*
8494526 TTTAGGGATTTTGGATTTTGGGGTTTGGAT
1 TTTAGGGATTTTGGATTTAGGGGTTTGGAT
*
8494556 TTTAGGGGTTTTGGATTTTAGGGGTTTGGAT
1 TTTAGGGATTTTGGA-TTTAGGGGTTTGGAT
* *
8494587 TTAAGGGATTTTAGATTT
1 TTTAGGGATTTTGGATTT
8494605 TTAGTGGTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 7 0.10
29 7 0.10
30 28 0.41
31 26 0.38
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.49
Consensus pattern (30 bp):
TTTAGGGATTTTGGATTTAGGGGTTTGGAT
Found at i:8496023 original size:3 final size:3
Alignment explanation
Indices: 8496017--8496049 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8496007 AATTTATTTT
8496017 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8496050 ATTTTAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Done.