Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 37 of 138
Found at i:8499446 original size:28 final size:29
Alignment explanation
Indices: 8499415--8499475 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
8499405 CAAATGACCA
* *
8499415 ATTTTGAT-ACACTAAA-TAAATTTTAGTG
1 ATTTTAATGACAC-AAATTAAAGTTTAGTG
*
8499443 ATTTTAATGAGACAAATTAAAGTTTAGTG
1 ATTTTAATGACACAAATTAAAGTTTAGTG
8499472 ATTT
1 ATTT
8499476 GGATGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43
Consensus pattern (29 bp):
ATTTTAATGACACAAATTAAAGTTTAGTG
Found at i:8501542 original size:33 final size:33
Alignment explanation
Indices: 8501500--8501565 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
8501490 CTATTTTGTT
*
8501500 TTGCTTCTTTATTTTCCCTA-AAAATCTTGTTGC
1 TTGCTTCTTTATTTTCCC-AGAAAATCTTATTGC
*
8501533 TTGCTTCTTTATTTTGCCAGAAAATCTTATTGC
1 TTGCTTCTTTATTTTCCCAGAAAATCTTATTGC
8501566 CCTAGCCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.50
Consensus pattern (33 bp):
TTGCTTCTTTATTTTCCCAGAAAATCTTATTGC
Found at i:8506730 original size:33 final size:33
Alignment explanation
Indices: 8506693--8506758 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
8506683 GGAGGCTAGG
8506693 GCAATAAGATTTTCT-GGGAAAATAAAGAAGCAA
1 GCAATAAGATTTT-TAGGGAAAATAAAGAAGCAA
8506726 GCAATAAGATTTTTAGGGAAAATAAAGAAGCAA
1 GCAATAAGATTTTTAGGGAAAATAAAGAAGCAA
8506759 AACAAAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (33 bp):
GCAATAAGATTTTTAGGGAAAATAAAGAAGCAA
Found at i:8508832 original size:28 final size:28
Alignment explanation
Indices: 8508769--8508833 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
8508759 TGACCAAATC
* *
8508769 CATCCAAATCACTAAACTTTATTTGTCT
1 CATCAAAATCACTAAAATTTATTTGTCT
* *
8508797 CATTAAAATCACTAAAATTTATTTAGTGT
1 CATCAAAATCACTAAAATTTATTT-GTCT
8508826 -ATCAAAAT
1 CATCAAAAT
8508834 TGGTCATTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 28 0.90
29 3 0.10
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (28 bp):
CATCAAAATCACTAAAATTTATTTGTCT
Found at i:8512196 original size:3 final size:3
Alignment explanation
Indices: 8512188--8512217 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8512178 ACTATTAAAT
8512188 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8512218 ATAAATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8512585 original size:14 final size:14
Alignment explanation
Indices: 8512554--8512585 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8512544 ACCAACCACG
*
8512554 AAAACAGAAACATA
1 AAAACAGAAACAAA
8512568 AAAACAGAAACAAA
1 AAAACAGAAACAAA
8512582 AAAA
1 AAAA
8512586 AAAGACACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.78, C:0.12, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAACAGAAACAAA
Found at i:8513688 original size:15 final size:15
Alignment explanation
Indices: 8513644--8513757 Score: 124
Period size: 15 Copynumber: 7.5 Consensus size: 15
8513634 TTAAAATTCG
*
8513644 AAACCCCTAAAAATCTA
1 AAACCCCT-AAAATC-C
* *
8513661 AAATCCCTTAAATCC
1 AAACCCCTAAAATCC
8513676 AAACCCCTAAAATCC
1 AAACCCCTAAAATCC
8513691 AAAACCCCTAAAATCC
1 -AAACCCCTAAAATCC
8513707 AAACCCC-AAAATCC
1 AAACCCCTAAAATCC
*
8513721 AAAATCCCTAAAATCC
1 -AAACCCCTAAAATCC
* *
8513737 AAA-CCCTTAAATCA
1 AAACCCCTAAAATCC
8513751 AAACCCC
1 AAACCCC
8513758 AAACCACAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
14 19 0.22
15 32 0.38
16 27 0.32
17 7 0.08
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCCTAAAATCC
Found at i:8513720 original size:30 final size:31
Alignment explanation
Indices: 8513635--8513757 Score: 153
Period size: 30 Copynumber: 4.0 Consensus size: 31
8513625 CTAAAACTCT
* * *
8513635 TAAAATTCGAAACCCCTAAAAATCTAAAATCCC
1 TAAAA-TCCAAACCCCT-AAAATCCAAAACCCC
*
8513668 TTAAATCCAAACCCCTAAAATCCAAAACCCC
1 TAAAATCCAAACCCCTAAAATCCAAAACCCC
*
8513699 TAAAATCCAAACCCC-AAAATCCAAAATCCC
1 TAAAATCCAAACCCCTAAAATCCAAAACCCC
*
8513729 TAAAATCCAAA-CCCTTAAAT-CAAAACCCC
1 TAAAATCCAAACCCCTAAAATCCAAAACCCC
8513758 AAACCACAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
29 11 0.14
30 29 0.36
31 27 0.33
32 10 0.12
33 4 0.05
ACGTcount: A:0.48, C:0.34, G:0.01, T:0.17
Consensus pattern (31 bp):
TAAAATCCAAACCCCTAAAATCCAAAACCCC
Found at i:8513774 original size:51 final size:50
Alignment explanation
Indices: 8513705--8513813 Score: 139
Period size: 51 Copynumber: 2.1 Consensus size: 50
8513695 CCCCTAAAAT
* * *
8513705 CCAAACCCCAAAATCCAAAATCCCTAAAA-TCCAAACCCTTAAATCAAAACC
1 CCAAACCACAAAA-CCCAAA-CCCTAAAACTCCAAACCCTAAAATCAAAACC
*
8513756 CCAAACCACAAAACCCAAACCCTAAAATCTCCAAACTCTAAAATCAAAACC
1 CCAAACCACAAAACCCAAACCCTAAAA-CTCCAAACCCTAAAATCAAAACC
*
8513807 CTAAACC
1 CCAAACC
8513814 TTCCATATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
49 8 0.16
50 5 0.10
51 38 0.75
ACGTcount: A:0.50, C:0.38, G:0.00, T:0.13
Consensus pattern (50 bp):
CCAAACCACAAAACCCAAACCCTAAAACTCCAAACCCTAAAATCAAAACC
Found at i:8513782 original size:14 final size:15
Alignment explanation
Indices: 8513750--8513811 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 15
8513740 CCCTTAAATC
*
8513750 AAAACCCCAAACCAC-
1 AAAATCCCAAACC-CT
8513765 AAAA-CCCAAACCCT
1 AAAATCCCAAACCCT
*
8513779 AAAATCTCCAAACTCT
1 AAAATC-CCAAACCCT
*
8513795 AAAAT-CAAAACCCT
1 AAAATCCCAAACCCT
8513809 AAA
1 AAA
8513812 CCTTCCATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 1 0.02
14 22 0.54
15 5 0.12
16 13 0.32
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAATCCCAAACCCT
Found at i:8513791 original size:16 final size:16
Alignment explanation
Indices: 8513673--8513800 Score: 58
Period size: 16 Copynumber: 8.0 Consensus size: 16
8513663 ATCCCTTAAA
8513673 TCCAAACCCCTAAAATC
1 TCCAAA-CCCTAAAATC
*
8513690 -CAAAACCCCTAAAA--
1 TCCAAA-CCCTAAAATC
*
8513704 TCCAAACCCCAAAATC
1 TCCAAACCCTAAAATC
*
8513720 -CAAAATCCCTAAAA--
1 TCCAAA-CCCTAAAATC
*
8513734 TCCAAACCCTTAAATCAAAAC
1 TCCAAACCC-T--A--AAATC
*
8513755 CCCAAACCAC-AAAA-C
1 TCCAAACC-CTAAAATC
8513770 -CCAAACCCTAAAATC
1 TCCAAACCCTAAAATC
*
8513785 TCCAAACTCTAAAATC
1 TCCAAACCCTAAAATC
8513801 AAAACCCTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 33
0.68 0.06 0.26
Matches are distributed among these distances:
13 1 0.01
14 21 0.24
15 15 0.17
16 37 0.43
17 1 0.01
18 1 0.01
19 3 0.03
21 7 0.08
22 1 0.01
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (16 bp):
TCCAAACCCTAAAATC
Found at i:8514239 original size:16 final size:16
Alignment explanation
Indices: 8514220--8514250 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8514210 ACCAAAAAAC
8514220 CCAAACCCTAAAATCT
1 CCAAACCCTAAAATCT
*
8514236 CCAAACTCTAAAATC
1 CCAAACCCTAAAATC
8514251 AAAACCCTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.19
Consensus pattern (16 bp):
CCAAACCCTAAAATCT
Found at i:8516018 original size:21 final size:20
Alignment explanation
Indices: 8515993--8516034 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8515983 AAAAAAAAAA
8515993 AAAAACAAAATAAAAAGTTTTT
1 AAAAA-AAAAT-AAAAGTTTTT
*
8516015 AAAAAAAAATTAAAGTTTTT
1 AAAAAAAAATAAAAGTTTTT
8516035 TTTTTAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 5 0.26
22 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AAAAAAAAATAAAAGTTTTT
Found at i:8519581 original size:21 final size:18
Alignment explanation
Indices: 8519544--8519602 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
8519534 GGCATCACAC
8519544 AAAAAAAAAAAAATAAAA
1 AAAAAAAAAAAAATAAAA
**
8519562 AAAAAAAAAAAAAGTTTAA
1 AAAAAAAAAAAAA-TAAAA
**
8519581 AAAAAGGAAAAAATAAACA
1 AAAAAAAAAAAAATAAA-A
8519600 AAA
1 AAA
8519603 GGACATATTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.85, C:0.02, G:0.05, T:0.08
Consensus pattern (18 bp):
AAAAAAAAAAAAATAAAA
Found at i:8519593 original size:1 final size:1
Alignment explanation
Indices: 8519544--8519574 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
8519534 GGCATCACAC
*
8519544 AAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8519575 GTTTAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:8521547 original size:22 final size:22
Alignment explanation
Indices: 8521519--8521581 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
8521509 TTGAGATTTG
8521519 TAAGACCTCCGGGCATAATCTC
1 TAAGACCTCCGGGCATAATCTC
* * * *
8521541 TAAGACCTCCGAGTACAA-CTT
1 TAAGACCTCCGGGCATAATCTC
8521562 TAAAGACCTCCGGGCATAAT
1 T-AAGACCTCCGGGCATAAT
8521582 TTTGATTCGT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (22 bp):
TAAGACCTCCGGGCATAATCTC
Found at i:8521745 original size:110 final size:111
Alignment explanation
Indices: 8521564--8521799 Score: 307
Period size: 110 Copynumber: 2.1 Consensus size: 111
8521554 TACAACTTTA
* * ** * * *
8521564 AAGACCTCCGGGCATAATTTTGATTCGTGGTGTTATCTCGATCGATTCTTTATTTTTTGAATTAT
1 AAGACCTCCGGGCATAATTTTGATTCATGGTGTTATCTCGATCGATTCCTTATTCATTCAACTAC
* * *
8521629 GGTGTTATCCCAGTCGATTCTATAAGATCTTCGGACATGATT-TCT
66 GGTGTTATCCCAGTCGATTCTATAAGACCTCCGAACATGATTCTCT
*
8521674 AAGACCTCCAGGCATAATTTTGATTCATGGTGTTATCTCGATCGATTCCTTA-TCATTCAACT-C
1 AAGACCTCCGGGCATAATTTTGATTCATGGTGTTATCTCGATCGATTCCTTATTCATTCAACTAC
* *
8521737 GCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGAACATGATTCTGT
66 G-G-TGTTATCCCAGTCGATTCTATAAGACCTCCGAACATGATTCTCT
*
8521785 AAGACTTCCGGGCAT
1 AAGACCTCCGGGCAT
8521800 GATTCTGTAA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
108 1 0.01
109 7 0.06
110 85 0.79
111 15 0.14
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (111 bp):
AAGACCTCCGGGCATAATTTTGATTCATGGTGTTATCTCGATCGATTCCTTATTCATTCAACTAC
GGTGTTATCCCAGTCGATTCTATAAGACCTCCGAACATGATTCTCT
Found at i:8521819 original size:23 final size:23
Alignment explanation
Indices: 8521754--8521822 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
8521744 TATCCCAGTC
* **
8521754 GATTCTGTAAGACCTCCGAACAT
1 GATTCTGTAAGACCTTCGGGCAT
8521777 GATTCTGTAAGA-CTTCCGGGCAT
1 GATTCTGTAAGACCTT-CGGGCAT
8521800 GATTCTGTAAGACCTTCGGGCAT
1 GATTCTGTAAGACCTTCGGGCAT
8521823 AATCTCTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
22 2 0.05
23 36 0.88
24 3 0.07
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (23 bp):
GATTCTGTAAGACCTTCGGGCAT
Found at i:8522009 original size:110 final size:109
Alignment explanation
Indices: 8521865--8522478 Score: 636
Period size: 110 Copynumber: 5.6 Consensus size: 109
8521855 ATCTCTGGGT
* * * ** ** *
8521865 ATAATTTTGATTCACGGTGTTATTCCGATCGATTCTTTATCTTTTGATTTATGGTGTTATCTTAG
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
* *
8521930 TCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGACTTTCGGGT
66 TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGAC-TTCGGGC
* * * * * * * *
8521975 ATAATTTTGATTCGTGGTGTTAACCCGATTGATTCCTTATCTTTCGACTCGTGGTGTTGTCCCAA
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
* * *
8522040 TCGATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTCTGGGC
66 TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGACTTC-GGGC
* * * *
8522085 ATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGATATTATCCCAA
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
* * * * *
8522150 TCGATTCTGTAAGACCTTCAGACATGATTTCTAAAACCTTCAGGT
66 TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGA-CTTCGGGC
* * * * *
8522195 ATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTGACTCGCGATGTTAT-CCAA
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
* * *
8522259 TCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGACCTCTGAGC
66 TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGACTTC-GGGC
** ** * ** * *
8522304 ATAATTTCAATTCGCGGTGTTATCTTGATCGATTATTTATCTTTCAACTTGCAGTGTTATCCCAG
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
* * ** * *
8522369 TCGATTCTATAAGACCTCCGGATATGATTTTTAAGATCTCCGGGC
66 TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGA-CTTCGGGC
* * * * * * *
8522414 ATAATTTTGATTCGCAGTATTATCTCGATTGATTCTTGATCATTTGACTTGCGATGTTATCCCAA
1 ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
8522479 ATCTGAACTC
Statistics
Matches: 410, Mismatches: 89, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
108 3 0.01
109 86 0.21
110 316 0.77
111 5 0.01
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (109 bp):
ATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGCGGTGTTATCCCAA
TCGATTCTGTAAGACCTTCGGGCATGATTTCTAAGACTTCGGGC
Found at i:8522046 original size:288 final size:286
Alignment explanation
Indices: 8521513--8522091 Score: 782
Period size: 288 Copynumber: 2.0 Consensus size: 286
8521503 AAGATTTTGA
** *
8521513 GATTTGTAAGACCTCCGGGCATAATCTCTAAGACCTCCGAGTACAACTTTAAAGACCTCCGGGCA
1 GATTTGTAAGACCTCCGGGCATAATCTCTAAGACAACCGAGCACAACTTTAAAGACCTCCGGGCA
** *
8521578 TAATTTTGATTCGTGGTGTTATCTCGATCGATTCTTTATTTTTTGAATTATGGTGTTATCCCAGT
66 TAATTTTGATTCACGGTGTTATCTCGATCGATTCTTTATCTTTTGAATTATGGTGTTATCCCAGT
* *
8521643 CGATTCTATAAGATCTTCGGACATGATTTCTAAGACCTCCAGGCATAATTTTGATTCATGGTGTT
131 CGATTCTATAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAATTTTGATTCATGGTGTT
* * *
8521708 ATCTCGATCGATTCCTTATCATTCAACTCGCGATGTTATCCCAGTCGATTCTGTAAGACCTCCGA
196 AACCCGATCGATTCCTTATCATTCAACTCGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGA
*
8521773 ACATGATTCTGTAAGACTTCCGGGCAT
261 ACATGATT-TGTAAGACCTCCGGGCAT
* * * * *
8521800 GATTCTGTAAGACCTTCGGGCATAATCTCTAAGACAACCGAGCACAACTTTCAAGATCTCTGGGT
1 GATT-TGTAAGACCTCCGGGCATAATCTCTAAGACAACCGAGCACAACTTTAAAGACCTCCGGGC
* **
8521865 ATAATTTTGATTCACGGTGTTAT-TCCGATCGATTCTTTATCTTTTGATTTATGGTGTTATCTTA
65 ATAATTTTGATTCACGGTGTTATCT-CGATCGATTCTTTATCTTTTGAATTATGGTGTTATCCCA
* * * * * * *
8521929 GTCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGACTTTCGGGTATAATTTTGATTCGTGGTG
129 GTCGATTCTATAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAATTTTGATTCATGGTG
* * * * * * *
8521994 TTAACCCGATTGATTCCTTATCTTTCGACTCGTGGTGTTGTCCCAATCGATTCTGTAAGACCTTC
194 TTAACCCGATCGATTCCTTATCATTCAACTCGCGATGTTATCCCAATCGATTCTGTAAGACCTCC
* * *
8522059 GAGCATGATTTTTAAGACCTCTGGGCAT
259 GAACATGATTTGTAAGACCTCCGGGCAT
*
8522087 AATTT
1 GATTT
8522092 CGATTCGCGA
Statistics
Matches: 252, Mismatches: 38, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
286 1 0.00
287 23 0.09
288 228 0.90
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (286 bp):
GATTTGTAAGACCTCCGGGCATAATCTCTAAGACAACCGAGCACAACTTTAAAGACCTCCGGGCA
TAATTTTGATTCACGGTGTTATCTCGATCGATTCTTTATCTTTTGAATTATGGTGTTATCCCAGT
CGATTCTATAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAATTTTGATTCATGGTGTT
AACCCGATCGATTCCTTATCATTCAACTCGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGA
ACATGATTTGTAAGACCTCCGGGCAT
Found at i:8522293 original size:22 final size:22
Alignment explanation
Indices: 8522268--8522311 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8522258 ATCGATTCTG
*
8522268 TAAGACCT-TCGAGCATGATTTC
1 TAAGACCTCT-GAGCATAATTTC
8522290 TAAGACCTCTGAGCATAATTTC
1 TAAGACCTCTGAGCATAATTTC
8522312 AATTCGCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (22 bp):
TAAGACCTCTGAGCATAATTTC
Found at i:8522345 original size:219 final size:219
Alignment explanation
Indices: 8521930--8522475 Score: 711
Period size: 219 Copynumber: 2.5 Consensus size: 219
8521920 GTTATCTTAG
* * * *
8521930 TCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGACTTTCGGGTATAATTTTGATTCGTGGTGT
1 TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGATGT
* * * * *
8521995 TAACCCGATTGATTCCTTATCTTTCGACTCGTGGTGTTGTCCCAATCGATTCTGTAAGACCTTCG
66 TATCCCGATTGATTCCTTATCTTTTGACTCGCGATGTTAT-CCAATCGATTCTGTAAGACCTTCG
* * * *
8522060 AGCATGATTTTTAAGACCTCTGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTAT
130 AGCATGATTTCTAAGACCTCTGAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTATTTAT
**
8522125 CTTTTGACTTGC-GATATTATCCCAA
195 CTTTCAACTTGCAG-TATTATCCCAA
* * * * *
8522150 TCGATTCTGTAAGACCTTCAGACATGATTTCTAAAACCTTCAGGTATAATTTTGATTCACGATGT
1 TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGATGT
*
8522215 TATCCCGATCGATTCCTTATCTTTTGACTCGCGATGTTATCCAATCGATTCTGTAAGACCTTCGA
66 TATCCCGATTGATTCCTTATCTTTTGACTCGCGATGTTATCCAATCGATTCTGTAAGACCTTCGA
* **
8522280 GCATGATTTCTAAGACCTCTGAGCATAATTTCAATTCGCGGTGTTATCTTGATCGATTATTTATC
131 GCATGATTTCTAAGACCTCTGAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTATTTATC
* *
8522345 TTTCAACTTGCAGTGTTATCCCAG
196 TTTCAACTTGCAGTATTATCCCAA
* * * * * * *
8522369 TCGATTCTATAAGACCTCCGGATATGATTTTTAAGATCTCCGGGCATAATTTTGATTCGC-AGTA
1 TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGA-TG
* * *
8522433 TTATCTCGATTGATT-CTTGATCATTTGACTTGCGATGTTATCC
65 TTATCCCGATTGATTCCTT-ATCTTTTGACTCGCGATGTTATCC
8522476 CAAATCTGAA
Statistics
Matches: 281, Mismatches: 42, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
218 4 0.01
219 186 0.66
220 91 0.32
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (219 bp):
TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGATGT
TATCCCGATTGATTCCTTATCTTTTGACTCGCGATGTTATCCAATCGATTCTGTAAGACCTTCGA
GCATGATTTCTAAGACCTCTGAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTATTTATC
TTTCAACTTGCAGTATTATCCCAA
Found at i:8522462 original size:329 final size:330
Alignment explanation
Indices: 8521862--8522478 Score: 801
Period size: 329 Copynumber: 1.9 Consensus size: 330
8521852 AAGATCTCTG
* * * * * * *
8521862 GGTATAATTTTGATTCACGGTGTTATTCCGATCGATTCTTTATCTTTTGATTTATGGTGTTATCT
1 GGTATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTGACTCACGATGTTATCT
* * * * * * ** *
8521927 TAGTCGATTCTGTAAGACCTCCGGGCATGATTTCTAAGACTTTCGGGTATAATTTTGATTCGTGG
66 CAATCGATTCTGTAAGACCTCCGAGCATGATTTCTAAGACTCTCGAGCATAATTTCAATTCGCGG
* * * ** * *
8521992 TGTTAACCCGATTGATTCCTTATCTTTCGACTCGTGGTGTTGTCCCAATCGATTCTGTAAGACCT
131 TGTTAACCCGATCGATTACTTATCTTTCAACTCGCAGTGTTATCCCAATCGATTCTATAAGACCT
* * *
8522057 TCGAGCATGATTTTTAAGACCTCTGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTT
196 CCGAGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGATATTATCCCGATCGATTCTT
* *
8522122 TATCTTTTGACTTGCGATATTATCCCAATCGATTCTGTAAGACCTTCAGACATGATTTCTAAAAC
261 GATCATTTGACTTGCGATATTATCCCAATCGATTCTGTAAGACCTTCAGACATGATTTCTAAAAC
8522187 CTTCA
326 CTTCA
*
8522192 GGTATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTGACTCGCGATGTTATC-
1 GGTATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTGACTCACGATGTTATCT
*
8522256 CAATCGATTCTGTAAGACCTTCGAGCATGATTTCTAAGAC-CTCTGAGCATAATTTCAATTCGCG
66 CAATCGATTCTGTAAGACCTCCGAGCATGATTTCTAAGACTCTC-GAGCATAATTTCAATTCGCG
* ** * * *
8522320 GTGTTATCTTGATCGATTATTTATCTTTCAACTTGCAGTGTTATCCCAGTCGATTCTATAAGACC
130 GTGTTAACCCGATCGATTACTTATCTTTCAACTCGCAGTGTTATCCCAATCGATTCTATAAGACC
* * * * *
8522385 TCCG-GATATGATTTTTAAGATCTCCGGGCATAATTTTGATTCGC-AGTATTATCTCGATTGATT
195 TCCGAG-CATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGA-TATTATCCCGATCGATT
*
8522448 CTTGATCATTTGACTTGCGATGTTATCCCAA
258 CTTGATCATTTGACTTGCGATATTATCCCAA
8522479 ATCTGAACTC
Statistics
Matches: 242, Mismatches: 42, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
328 4 0.02
329 182 0.75
330 56 0.23
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (330 bp):
GGTATAATTTTGATTCACGATGTTATCCCGATCGATTCCTTATCTTTTGACTCACGATGTTATCT
CAATCGATTCTGTAAGACCTCCGAGCATGATTTCTAAGACTCTCGAGCATAATTTCAATTCGCGG
TGTTAACCCGATCGATTACTTATCTTTCAACTCGCAGTGTTATCCCAATCGATTCTATAAGACCT
CCGAGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGATATTATCCCGATCGATTCTT
GATCATTTGACTTGCGATATTATCCCAATCGATTCTGTAAGACCTTCAGACATGATTTCTAAAAC
CTTCA
Found at i:8522910 original size:25 final size:24
Alignment explanation
Indices: 8522882--8522930 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
8522872 AATTATTAAA
8522882 AAAAAGAAAAGAAAGAGAAAATAGG
1 AAAAAGAAAA-AAAGAGAAAATAGG
*
8522907 AAAAAGAAAAAAATAGAAAATAGG
1 AAAAAGAAAAAAAGAGAAAATAGG
8522931 GTGGCTGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.06
Consensus pattern (24 bp):
AAAAAGAAAAAAAGAGAAAATAGG
Found at i:8523844 original size:14 final size:14
Alignment explanation
Indices: 8523825--8523856 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8523815 AAAAAAAATT
*
8523825 TTTTCTTTTTTAAA
1 TTTTCTTTTCTAAA
8523839 TTTTCTTTTCTAAA
1 TTTTCTTTTCTAAA
8523853 TTTT
1 TTTT
8523857 TTATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCTTTTCTAAA
Found at i:8524293 original size:16 final size:16
Alignment explanation
Indices: 8524274--8524371 Score: 89
Period size: 16 Copynumber: 6.2 Consensus size: 16
8524264 ATAGGTTTCT
8524274 AAAACTCCTAAAATCC
1 AAAACTCCTAAAATCC
8524290 AAAA-TCCTAAAATCC
1 AAAACTCCTAAAATCC
* *
8524305 GAAAC-CTCTAAAAATCT
1 AAAACTC-CT-AAAATCC
*
8524322 AAAATCTCCT-AAATTC
1 AAAA-CTCCTAAAATCC
*
8524338 -AAACCCCTAAAATCC
1 AAAACTCCTAAAATCC
8524353 AAAA-TCTCTAAAATCC
1 AAAACTC-CTAAAATCC
8524369 AAA
1 AAA
8524372 CTCTTACATT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
14 4 0.06
15 24 0.36
16 25 0.38
17 9 0.14
18 3 0.05
19 1 0.02
ACGTcount: A:0.50, C:0.28, G:0.01, T:0.21
Consensus pattern (16 bp):
AAAACTCCTAAAATCC
Found at i:8524295 original size:7 final size:8
Alignment explanation
Indices: 8524272--8524368 Score: 53
Period size: 7 Copynumber: 12.1 Consensus size: 8
8524262 CCATAGGTTT
8524272 CTAAAACTC
1 CTAAAA-TC
8524281 CTAAAATC
1 CTAAAATC
8524289 C-AAAATC
1 CTAAAATC
8524296 CTAAAATC
1 CTAAAATC
* *
8524304 C-GAAACC
1 CTAAAATC
8524311 TCTAAAAAT-
1 -CT-AAAATC
8524320 CTAAAATCTC
1 CTAAAA--TC
*
8524330 CT-AAATT
1 CTAAAATC
**
8524337 C-AAACCC
1 CTAAAATC
8524344 CTAAAATC
1 CTAAAATC
8524352 C-AAAATC
1 CTAAAATC
8524359 TCTAAAATC
1 -CTAAAATC
8524368 C
1 C
8524369 AAACTCTTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 23
0.67 0.10 0.23
Matches are distributed among these distances:
7 26 0.39
8 20 0.30
9 16 0.24
10 5 0.07
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (8 bp):
CTAAAATC
Found at i:8524300 original size:24 final size:24
Alignment explanation
Indices: 8524272--8524368 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 24
8524262 CCATAGGTTT
8524272 CTAAAACTCCTAAAATC-CAAAATC
1 CTAAAA-TCCTAAAATCTCAAAATC
* * *
8524296 CTAAAATCCGAAACCTCTAAAAAT-
1 CTAAAATCCTAAA-ATCTCAAAATC
**
8524320 CTAAAATCTCCT-AAAT-TCAAACCC
1 CTAAAA--TCCTAAAATCTCAAAATC
8524344 CTAAAATCC-AAAATCTCTAAAATC
1 CTAAAATCCTAAAATCTC-AAAATC
8524368 C
1 C
8524369 AAACTCTTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
22 7 0.13
23 12 0.22
24 26 0.47
25 7 0.13
26 3 0.05
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (24 bp):
CTAAAATCCTAAAATCTCAAAATC
Found at i:8524316 original size:31 final size:30
Alignment explanation
Indices: 8524275--8524372 Score: 108
Period size: 31 Copynumber: 3.1 Consensus size: 30
8524265 TAGGTTTCTA
*
8524275 AAACTCCTAAAATCCAAAATCCTAAAATCC
1 AAACCCCTAAAATCCAAAATCCTAAAATCC
* * *
8524305 GAAACCTCTAAAAATCTAAAATCTCCT-AAATTC
1 -AAACCCCT-AAAATCCAAAA--TCCTAAAATCC
8524338 AAACCCCTAAAATCCAAAATCTCTAAAATCC
1 AAACCCCTAAAATCCAAAATC-CTAAAATCC
8524369 AAAC
1 AAAC
8524373 TCTTACATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
29 2 0.04
30 2 0.04
31 25 0.45
32 17 0.31
33 5 0.09
34 4 0.07
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (30 bp):
AAACCCCTAAAATCCAAAATCCTAAAATCC
Found at i:8524323 original size:48 final size:48
Alignment explanation
Indices: 8524271--8524365 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
8524261 ACCATAGGTT
* *
8524271 TCTAAAA-CTCCTAAAATCCAAAATCCTAAAATCCGAAACCTCTAAAAA
1 TCTAAAATCTCCT-AAATCCAAAACCCTAAAATCCAAAACCTCTAAAAA
* * *
8524319 TCTAAAATCTCCTAAATTCAAACCCCTAAAATCCAAAATCTCTAAAA
1 TCTAAAATCTCCTAAATCCAAAACCCTAAAATCCAAAACCTCTAAAA
8524366 TCCAAACTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
48 36 0.88
49 5 0.12
ACGTcount: A:0.48, C:0.27, G:0.01, T:0.23
Consensus pattern (48 bp):
TCTAAAATCTCCTAAATCCAAAACCCTAAAATCCAAAACCTCTAAAAA
Found at i:8526038 original size:28 final size:28
Alignment explanation
Indices: 8525992--8526047 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8525982 TGGTTTTAAA
* *
8525992 TTACTAATGAACAATACTCAAGACATAG
1 TTACTAATGAAAAACACTCAAGACATAG
8526020 TTACTAATGAAAAACACTCAAGACATAG
1 TTACTAATGAAAAACACTCAAGACATAG
8526048 GAATCAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (28 bp):
TTACTAATGAAAAACACTCAAGACATAG
Found at i:8531099 original size:20 final size:20
Alignment explanation
Indices: 8531074--8531132 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
8531064 ACATATAATA
8531074 TATTTAAAATGTAAATTATT
1 TATTTAAAATGTAAATTATT
* * *
8531094 TATTTAATATATAATTTATT
1 TATTTAAAATGTAAATTATT
*
8531114 TATTTAACATGTAAATTAT
1 TATTTAAAATGTAAATTAT
8531133 GAAAATATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
TATTTAAAATGTAAATTATT
Found at i:8532960 original size:21 final size:21
Alignment explanation
Indices: 8532921--8532960 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8532911 ATTATAAATC
8532921 AATTATAAAAAATATTTATTT
1 AATTATAAAAAATATTTATTT
*
8532942 AATT-TAAAAATTATATTAT
1 AATTATAAAAAATAT-TTAT
8532961 ATTGTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTATAAAAAATATTTATTT
Found at i:8538288 original size:8 final size:8
Alignment explanation
Indices: 8538277--8538369 Score: 65
Period size: 8 Copynumber: 12.4 Consensus size: 8
8538267 TTTTTTTAGG
8538277 TTTAGGGT
1 TTTAGGGT
*
8538285 TTTAGGCT
1 TTTAGGGT
*
8538293 TTTA--AT
1 TTTAGGGT
*
8538299 TTGAGGG-
1 TTTAGGGT
*
8538306 TTTAAGGT
1 TTTAGGGT
8538314 TTTAGGGT
1 TTTAGGGT
*
8538322 TTTA--AT
1 TTTAGGGT
*
8538328 TTGAGGG-
1 TTTAGGGT
8538335 TTTAGGGT
1 TTTAGGGT
8538343 TTTAGGGT
1 TTTAGGGT
*
8538351 TTTCA-GTT
1 TTT-AGGGT
8538359 TTTAGGGT
1 TTTAGGGT
8538367 TTT
1 TTT
8538370 TATTTTAGGA
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
6 8 0.12
7 12 0.19
8 43 0.67
9 1 0.02
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (8 bp):
TTTAGGGT
Found at i:8538308 original size:29 final size:29
Alignment explanation
Indices: 8538275--8538353 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
8538265 ATTTTTTTTA
*
8538275 GGTTTAGGGTTTTAGGCTTTTAATTTGAG
1 GGTTTAGGGTTTTAGGGTTTTAATTTGAG
*
8538304 GGTTTAAGGTTTTAGGGTTTTAATTTGAG
1 GGTTTAGGGTTTTAGGGTTTTAATTTGAG
8538333 GGTTTAGGGTTTTAGGGTTTT
1 GGTTTAGGGTTTTAGGGTTTT
8538354 CAGTTTTTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.16, C:0.01, G:0.33, T:0.49
Consensus pattern (29 bp):
GGTTTAGGGTTTTAGGGTTTTAATTTGAG
Found at i:8538350 original size:44 final size:43
Alignment explanation
Indices: 8538297--8538414 Score: 112
Period size: 45 Copynumber: 2.7 Consensus size: 43
8538287 TAGGCTTTTA
* *
8538297 ATTTGAGGGTTTAAGGTTTTAGGGTTTTAATTTGAGGGTTTAGG
1 ATTTTAGGGTTTAAGGTTTTAGGGTTTTAATTTGAGGATTT-GG
* * * * * *
8538341 GTTTTAGGGTTTTCAGTTTTTAGGGTTTTTATTTTAGGATTTTG
1 ATTTTAGGG-TTTAAGGTTTTAGGGTTTTAATTTGAGGATTTGG
*
8538385 ATTTTATGGTTTAAAAGG-TTTAGGGTTTTA
1 ATTTTAGGGTTT--AAGGTTTTAGGGTTTTA
8538415 GTATTTTGAT
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
43 3 0.05
44 26 0.45
45 29 0.50
ACGTcount: A:0.19, C:0.01, G:0.28, T:0.52
Consensus pattern (43 bp):
ATTTTAGGGTTTAAGGTTTTAGGGTTTTAATTTGAGGATTTGG
Found at i:8538377 original size:14 final size:14
Alignment explanation
Indices: 8538284--8538396 Score: 73
Period size: 14 Copynumber: 7.8 Consensus size: 14
8538274 AGGTTTAGGG
* *
8538284 TTTTAGGCTTTTAA
1 TTTTAGGGTTTTGA
* * *
8538298 TTTGAGGGTTTAAGG
1 TTTTAGGGTTT-TGA
*
8538313 TTTTAGGGTTTTAA
1 TTTTAGGGTTTTGA
* * *
8538327 TTTGAGGGTTTAGGG
1 TTTTAGGGTTT-TGA
*
8538342 TTTTAGGGTTTTCAGT
1 TTTTAGGGTTTT--GA
*
8538358 TTTTAGGGTTTTTA
1 TTTTAGGGTTTTGA
*
8538372 TTTTAGGATTTTGA
1 TTTTAGGGTTTTGA
*
8538386 TTTTATGGTTT
1 TTTTAGGGTTT
8538397 AAAAGGTTTA
Statistics
Matches: 73, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
14 40 0.55
15 20 0.27
16 13 0.18
ACGTcount: A:0.17, C:0.02, G:0.27, T:0.55
Consensus pattern (14 bp):
TTTTAGGGTTTTGA
Found at i:8538469 original size:21 final size:21
Alignment explanation
Indices: 8538403--8538476 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
8538393 GTTTAAAAGG
**
8538403 TTTAGGGTTTTAGTATTTTGA-
1 TTTAGGG-TTTAGGGTTTTGAT
* *
8538424 TTTGGAGGTTTAAGGTTTT-AGT
1 TTTAG-GGTTTAGGGTTTTGA-T
8538446 TTTAGGGTTTAGGGTTTTGAT
1 TTTAGGGTTTAGGGTTTTGAT
*
8538467 TTTAGAGTTT
1 TTTAGGGTTT
8538477 GGGATTTAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 1 0.02
21 34 0.81
22 7 0.17
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTTGAT
Found at i:8538470 original size:14 final size:14
Alignment explanation
Indices: 8538453--8538534 Score: 60
Period size: 14 Copynumber: 5.7 Consensus size: 14
8538443 AGTTTTAGGG
*
8538453 TTTAGGGTTTTGAT
1 TTTAAGGTTTTGAT
*
8538467 TTT-AGAGTTTGGGA-
1 TTTAAG-GTTT-TGAT
8538481 TTTAAGGTTTTGAT
1 TTTAAGGTTTTGAT
**
8538495 TTTAAGGTTTAAAAT
1 TTTAAGGTTT-TGAT
*
8538510 GTTTAAGATTTTGAT
1 -TTTAAGGTTTTGAT
*
8538525 TTTAGGGTTT
1 TTTAAGGTTT
8538535 AAAGGGTTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
13 3 0.06
14 32 0.62
15 8 0.15
16 9 0.17
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTTGAT
Found at i:8538558 original size:30 final size:30
Alignment explanation
Indices: 8538449--8538573 Score: 123
Period size: 30 Copynumber: 4.2 Consensus size: 30
8538439 TTTTAGTTTT
* *
8538449 AGGGTTTAGGGTTTTGATTTTAGAGTTT--
1 AGGGTTTAAGGTTTTGATTTTAGGGTTTAA
*
8538477 -GGGATTTAAGGTTTTGATTTTAAGGTTTAA
1 AGGG-TTTAAGGTTTTGATTTTAGGGTTTAA
** *
8538507 AATGTTTAAGATTTTGATTTTAGGGTTTAA
1 AGGGTTTAAGGTTTTGATTTTAGGGTTTAA
* **
8538537 AGGGTTTAAGGTTTT-AGTTTTAGTGTTTTG
1 AGGGTTTAAGGTTTTGA-TTTTAGGGTTTAA
8538567 AGGGTTT
1 AGGGTTT
8538574 TGAATTTTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
27 3 0.04
28 21 0.27
29 1 0.01
30 53 0.67
31 1 0.01
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (30 bp):
AGGGTTTAAGGTTTTGATTTTAGGGTTTAA
Found at i:8539817 original size:23 final size:25
Alignment explanation
Indices: 8539790--8539842 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
8539780 GGGTTGTTGT
*
8539790 GGCATGGGAG-CTAGAGGTTTC-TG
1 GGCATGGAAGACTAGAGGTTTCTTG
* *
8539813 GGCATGGAAGACTTGGGGTTTCTTG
1 GGCATGGAAGACTAGAGGTTTCTTG
8539838 GGCAT
1 GGCAT
8539843 CTGAAAGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.36
24 9 0.36
25 7 0.28
ACGTcount: A:0.17, C:0.13, G:0.42, T:0.28
Consensus pattern (25 bp):
GGCATGGAAGACTAGAGGTTTCTTG
Found at i:8539853 original size:27 final size:24
Alignment explanation
Indices: 8539805--8539853 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
8539795 GGGAGCTAGA
*
8539805 GGTTTCTGGGCATGGAAGACTTGG
1 GGTTTCTGGGCATGAAAGACTTGG
8539829 GGTTTCTTGGGCATCTGAAAGACTT
1 GGTTTC-TGGGCA--TGAAAGACTT
8539854 AGGATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 6 0.29
27 9 0.43
ACGTcount: A:0.18, C:0.14, G:0.35, T:0.33
Consensus pattern (24 bp):
GGTTTCTGGGCATGAAAGACTTGG
Found at i:8540398 original size:21 final size:21
Alignment explanation
Indices: 8540374--8540416 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8540364 GGTATAAAAA
*
8540374 ATTAAAATTAATAATAATATT
1 ATTAAAATTAATAATAAAATT
*
8540395 ATTAATATTAATAATAAAATT
1 ATTAAAATTAATAATAAAATT
8540416 A
1 A
8540417 ATGTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTAAAATTAATAATAAAATT
Found at i:8540431 original size:18 final size:18
Alignment explanation
Indices: 8540367--8540418 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 18
8540357 AATAAAAGGT
*
8540367 ATAA-AAAATTAAAATTA
1 ATAATAAAATTAATATTA
8540384 ATAATAATATTATTAATATTA
1 ATAATAA-A--ATTAATATTA
8540405 ATAATAAAATTAAT
1 ATAATAAAATTAAT
8540419 GTTATTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 4 0.13
18 8 0.27
19 1 0.03
20 1 0.03
21 16 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATAAAATTAATATTA
Found at i:8540659 original size:15 final size:15
Alignment explanation
Indices: 8540641--8540680 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
8540631 CTAAAATTCG
*
8540641 AAATCCTAAACCCTA
1 AAATCCAAAACCCTA
*
8540656 AAATCCAAAACCTTA
1 AAATCCAAAACCCTA
*
8540671 AAATTCAAAA
1 AAATCCAAAA
8540681 TTCTGAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATCCAAAACCCTA
Found at i:8540672 original size:22 final size:21
Alignment explanation
Indices: 8540584--8540672 Score: 60
Period size: 22 Copynumber: 4.2 Consensus size: 21
8540574 CCTAAATCCT
*
8540584 TTAAACCCTAAAA-CTAAAAC
1 TTAAACCCTAAAATCCAAAAC
*
8540604 TTCAAA-CCTCAAATCCTAAAAC
1 TT-AAACCCTAAAATCC-AAAAC
* * *
8540626 -T-GACCCTAAAATTCGAAATC
1 TTAAACCCTAAAA-TCCAAAAC
*
8540646 CTAAACCCTAAAATCCAAAACC
1 TTAAACCCTAAAATCCAAAA-C
8540668 TTAAA
1 TTAAA
8540673 ATTCAAAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
19 1 0.02
20 18 0.35
21 13 0.25
22 19 0.37
ACGTcount: A:0.48, C:0.28, G:0.02, T:0.21
Consensus pattern (21 bp):
TTAAACCCTAAAATCCAAAAC
Found at i:8542267 original size:20 final size:21
Alignment explanation
Indices: 8542238--8542277 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8542228 TATTTTGGTA
*
8542238 TTATTATT-AAGTTTATTTTT
1 TTATTATTAAAGTTCATTTTT
*
8542258 TTATTTTTAAAGTTCATTTT
1 TTATTATTAAAGTTCATTTT
8542278 AAAAGTTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (21 bp):
TTATTATTAAAGTTCATTTTT
Found at i:8543377 original size:18 final size:18
Alignment explanation
Indices: 8543363--8543401 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8543353 TTTTTTTTCT
*
8543363 TTTTTTTTGTATTTTGTA
1 TTTTTCTTGTATTTTGTA
*
8543381 TTTTTCTTGTATTTTATA
1 TTTTTCTTGTATTTTGTA
8543399 TTT
1 TTT
8543402 AATAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.77
Consensus pattern (18 bp):
TTTTTCTTGTATTTTGTA
Found at i:8543715 original size:50 final size:49
Alignment explanation
Indices: 8543641--8544010 Score: 290
Period size: 47 Copynumber: 7.6 Consensus size: 49
8543631 TAAAATCTGA
* * *
8543641 AAAAGACTCC-CTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTG
1 AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * *
8543689 AAAAGGGCTCCTCTTAGCAAAAGCTCAACGATTTTAAAAATTTCATC-TG
1 AAAA-GGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * * *
8543738 AAAAAGCTTCTCTCAACAAAGGCTCAACAACTTTAAAATTTTAAAATC-TG
1 AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTT--CATCTTG
* * ** * *
8543788 AAAAAGACTCCTCTTAGCAAAAACTCAATAACTTCAAAAATTTCATCTTG
1 -AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * * *
8543838 AAAATGGCTCCTCTCAGTAAAGGCTCAACGA-TTTTAAAATTTTATCTGG
1 AAAA-GGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * *
8543887 AAAA-GCTTCTCTCAGCAGAGGCTCAATAACTTT-AAAA-TCCATCTTG
1 AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * ** * *
8543933 AAAAAGCTCTTCTTAATAGAGGCTCAACTACTTTAAAAATTT--TCTTG
1 AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
* * * *
8543980 AAAAAGCTCATTTCAACAAAGGCTCAACAAC
1 AAAAGGCTCCTCTCAGCAAAGGCTCAACAAC
8544011 AAGCTCCTCT
Statistics
Matches: 251, Mismatches: 60, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
46 10 0.04
47 76 0.30
48 41 0.16
49 37 0.15
50 55 0.22
51 32 0.13
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (49 bp):
AAAAGGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
Found at i:8543763 original size:98 final size:98
Alignment explanation
Indices: 8543635--8543876 Score: 263
Period size: 99 Copynumber: 2.4 Consensus size: 98
8543625 AAAATTTAAA
* * * * *
8543635 ATCTGAAAAAGAC-TCCCTCAGCAGAGGCTCAACAACTTTAAAAATCT-CATCTTGAAAAGGGCT
1 ATCTGAAAAAG-CTTCTCTCAGCAAAGGCTCAACAACTTTAAAAATCTAAATC-TGAAAAAGACT
* * * *
8543698 CCTCTTAGCAAAAGCTCAACGATTTTAAAAATTTC
64 CCTCTTAGCAAAAACTCAACAACTTCAAAAATTTC
* * *
8543733 ATCTGAAAAAGCTTCTCTCAACAAAGGCTCAACAACTTTAAAATTTTAAAATCTGAAAAAGACTC
1 ATCTGAAAAAGCTTCTCTCAGCAAAGGCTCAACAACTTTAAAAATCT-AAATCTGAAAAAGACTC
*
8543798 CTCTTAGCAAAAACTCAATAACTTCAAAAATTTC
65 CTCTTAGCAAAAACTCAACAACTTCAAAAATTTC
* * * * *
8543832 ATCTTGAAAATGGCTCCTCTCAGTAAAGGCTCAACGATTTTAAAA
1 ATC-TGAAAA-AGCTTCTCTCAGCAAAGGCTCAACAACTTTAAAA
8543877 TTTTATCTGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
97 1 0.01
98 40 0.33
99 42 0.35
100 9 0.08
101 28 0.23
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (98 bp):
ATCTGAAAAAGCTTCTCTCAGCAAAGGCTCAACAACTTTAAAAATCTAAATCTGAAAAAGACTCC
TCTTAGCAAAAACTCAACAACTTCAAAAATTTC
Found at i:8543790 original size:148 final size:148
Alignment explanation
Indices: 8543615--8543924 Score: 435
Period size: 148 Copynumber: 2.1 Consensus size: 148
8543605 TTGAAGCTTG
* ** *
8543615 ACAACTTTTGAAAA-TTTAAAATCTGAAAAAGACTCC-CTCAGCAGAGGCTCAACAACTTTAAAA
1 ACAAC-TTT-AAAATTTTAAAATCTGAAAAAGACTCCTCTCAGCAAAAACTCAACAACTTCAAAA
*
8543678 ATCTCATCTTGAAAAGGGCTCCTCTTAGCAAAAGCTCAACGATTTTAAAAATTTCATCTGAAAAA
64 ATCTCATCTTGAAAAGGGCTCCTCTCAGCAAAAGCTCAACGATTTT-AAAATTTCATCTGAAAAA
8543743 GCTTCTCTCAACAAAGGCTCA
128 GCTTCTCTCAACAAAGGCTCA
* *
8543764 ACAACTTTAAAATTTTAAAATCTGAAAAAGACTCCTCTTAGCAAAAACTCAATAACTTCAAAAAT
1 ACAACTTTAAAATTTTAAAATCTGAAAAAGACTCCTCTCAGCAAAAACTCAACAACTTCAAAAAT
* * * * * *
8543829 TTCATCTTGAAAATGGCTCCTCTCAGTAAAGGCTCAACGATTTTAAAATTTTATCTGGAAAAGCT
66 CTCATCTTGAAAAGGGCTCCTCTCAGCAAAAGCTCAACGATTTTAAAATTTCATCTGAAAAAGCT
* *
8543894 TCTCTCAGCAGAGGCTCA
131 TCTCTCAACAAAGGCTCA
*
8543912 ATAACTTTAAAAT
1 ACAACTTTAAAAT
8543925 CCATCTTGAA
Statistics
Matches: 143, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
147 4 0.03
148 72 0.50
149 67 0.47
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (148 bp):
ACAACTTTAAAATTTTAAAATCTGAAAAAGACTCCTCTCAGCAAAAACTCAACAACTTCAAAAAT
CTCATCTTGAAAAGGGCTCCTCTCAGCAAAAGCTCAACGATTTTAAAATTTCATCTGAAAAAGCT
TCTCTCAACAAAGGCTCA
Found at i:8544015 original size:28 final size:28
Alignment explanation
Indices: 8543983--8544038 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
8543973 TTTCTTGAAA
*
8543983 AAGCTCATTTCAACAAAGGCTCAACAAC
1 AAGCTCATCTCAACAAAGGCTCAACAAC
* *
8544011 AAGCTCCTCTCAACAGAGGCTCAACAAC
1 AAGCTCATCTCAACAAAGGCTCAACAAC
8544039 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.32, G:0.12, T:0.16
Consensus pattern (28 bp):
AAGCTCATCTCAACAAAGGCTCAACAAC
Found at i:8544041 original size:75 final size:75
Alignment explanation
Indices: 8543936--8544085 Score: 219
Period size: 75 Copynumber: 2.0 Consensus size: 75
8543926 CATCTTGAAA
* * * * * * *
8543936 AAGCTCTTCTTAATAGAGGCTCAACTACTTTAAAAATTTTCTTGAAAAAGCTCATTTCAACAAAG
1 AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTAAAAAAACTCATTTCAACAAAG
8544001 GCTCAACAAC
66 GCTCAACAAC
* *
8544011 AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTAAAAAAACTCCTTTCAACAGAG
1 AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTAAAAAAACTCATTTCAACAAAG
8544076 GCTCAACAAC
66 GCTCAACAAC
8544086 TTTAAAATCT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.26
Consensus pattern (75 bp):
AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTAAAAAAACTCATTTCAACAAAG
GCTCAACAAC
Found at i:8544107 original size:122 final size:123
Alignment explanation
Indices: 8543889--8544134 Score: 295
Period size: 122 Copynumber: 2.0 Consensus size: 123
8543879 TTATCTGGAA
* * * * * * *
8543889 AAGCTTCTCTCAGCAGAGGCTCAATAACTTTAAAATCCATCTTGAAAAAGCTCTTCTTAATAGAG
1 AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCCATCTTAAAAAAACTCTTCTCAACAGAG
* *
8543954 GCTCAACTACTTTAAAAATTTTCTTGAAAAA-GCTCATTTCAACAAAGGCTCAACAAC
66 GCTCAACAACTTTAAAAATTTTCTTGAAAAAGGCTCATCTCAACAAAGGCTCAACAAC
*
8544011 AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTC-TCTTAAAAAAACTCCTT-TCAACAG
1 AAGCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCCATCTTAAAAAAACT-CTTCTCAACAG
* * *
8544074 AGGCTCAACAACTTT-AAAATCTCATT-TTGAAAAGGGCTCCTCTCAACAGAGGCTCAACAAC
64 AGGCTCAACAACTTTAAAAAT-T--TTCTTGAAAAAGGCTCATCTCAACAAAGGCTCAACAAC
8544135 TTTAAAATTT
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
121 5 0.05
122 59 0.56
123 16 0.15
124 25 0.24
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.26
Consensus pattern (123 bp):
AAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCCATCTTAAAAAAACTCTTCTCAACAGAG
GCTCAACAACTTTAAAAATTTTCTTGAAAAAGGCTCATCTCAACAAAGGCTCAACAAC
Found at i:8544133 original size:49 final size:49
Alignment explanation
Indices: 8544013--8544239 Score: 299
Period size: 47 Copynumber: 4.8 Consensus size: 49
8544003 TCAACAACAA
**
8544013 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAAAT-TC-TCTT-AAAAAA
1 GCTCCTCTCAACAGAGGCTCAACAACTTT-AAAATCTCATCTTGAAAAGG
* * *
8544060 ACTCCTTTCAACAGAGGCTCAACAACTTTAAAATCTCATTTTGAAAAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGG
*
8544109 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGG
*
8544158 GCT--T-TCAAGCAGAGGCTCAACAACTTTAAAATCTCATTTTGAAAA-G
1 GCTCCTCTCAA-CAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGG
* *
8544204 ACTCCTCTCAATAGAGGCTCAACAAC-TTAAAATCTC
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTC
8544240 TCATATGTTC
Statistics
Matches: 160, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
46 12 0.08
47 74 0.46
48 18 0.11
49 56 0.35
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (49 bp):
GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGG
Found at i:8544177 original size:96 final size:94
Alignment explanation
Indices: 8544013--8544241 Score: 336
Period size: 96 Copynumber: 2.4 Consensus size: 94
8544003 TCAACAACAA
* *
8544013 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTAAAAAAACTCCTTTCAACAGAGGC
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCTCTT-AAAAAACGCCTTTCAACAGAGGC
8544078 TCAACAACTTTAAAATCTCATTTTGAAAAGG
65 TCAACAACTTTAAAATCTCATTTTGAAAA-G
* * *
8544109 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTT-GAAAAGGGCTTTCAAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTC-TCTTAAAAAACGCCTTTCAA-CAGAGG
8544173 CTCAACAACTTTAAAATCTCATTTTGAAAAG
64 CTCAACAACTTTAAAATCTCATTTTGAAAAG
* * *
8544204 ACTCCTCTCAATAGAGGCTCAACAAC-TTAAAATCTCTC
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCTC
8544242 ATATGTTCTT
Statistics
Matches: 123, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
93 2 0.02
94 9 0.07
95 36 0.29
96 72 0.59
97 4 0.03
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (94 bp):
GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCTCTTAAAAAACGCCTTTCAACAGAGGCT
CAACAACTTTAAAATCTCATTTTGAAAAG
Found at i:8554785 original size:20 final size:20
Alignment explanation
Indices: 8554746--8554800 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
8554736 GAAAAAAATA
* *
8554746 TTTTTTGTTTTTTAGTGATTT
1 TTTTTTGTGTTTT-GAGATTT
8554767 TTTTTTGTGTTTTGAGATTT
1 TTTTTTGTGTTTTGAGATTT
*
8554787 TGTGTTT-TGTTTTG
1 T-TTTTTGTGTTTTG
8554801 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.07, C:0.00, G:0.20, T:0.73
Consensus pattern (20 bp):
TTTTTTGTGTTTTGAGATTT
Found at i:8556413 original size:20 final size:21
Alignment explanation
Indices: 8556384--8556423 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8556374 TATTTTGGTA
8556384 TTATTATT-AAGTTTATTTTT
1 TTATTATTAAAGTTTATTTTT
*
8556404 TTATTTTTAAAGTTTATTTT
1 TTATTATTAAAGTTTATTTT
8556424 AAAAATTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTATTATTAAAGTTTATTTTT
Found at i:8557571 original size:19 final size:21
Alignment explanation
Indices: 8557535--8557577 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8557525 CCATCTCCAA
8557535 TTTTTTCTGTTCTATTTGT-T
1 TTTTTTCTGTTCTATTTGTAT
* *
8557555 TTTTTTCT-TTTTTTTTGTAT
1 TTTTTTCTGTTCTATTTGTAT
8557575 TTT
1 TTT
8557578 AGATTTTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.05, C:0.07, G:0.07, T:0.81
Consensus pattern (21 bp):
TTTTTTCTGTTCTATTTGTAT
Found at i:8557577 original size:11 final size:11
Alignment explanation
Indices: 8557553--8557604 Score: 61
Period size: 11 Copynumber: 4.5 Consensus size: 11
8557543 GTTCTATTTG
*
8557553 TTTTTTTTCT-
1 TTTTTTTTGTA
8557563 TTTTTTTTGTA
1 TTTTTTTTGTA
8557574 TTTTAGATTTTGTA
1 TTTT---TTTTGTA
8557588 TTTTTTTTGTA
1 TTTTTTTTGTA
8557599 TTTTTT
1 TTTTTT
8557605 ATTTAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
10 9 0.24
11 17 0.46
14 11 0.30
ACGTcount: A:0.10, C:0.02, G:0.08, T:0.81
Consensus pattern (11 bp):
TTTTTTTTGTA
Found at i:8558957 original size:346 final size:346
Alignment explanation
Indices: 8558523--8559207 Score: 1076
Period size: 346 Copynumber: 2.0 Consensus size: 346
8558513 GAAAAACTGC
* * * *
8558523 AAAAAAAAAGACAAAAAATAGACCAATCAACCAAAAGAAATCATATTATTAAACTCATATTCATA
1 AAAAAAAAAGACAAAAAATAAACCAATCAACCAAAAGAAATCAGATTATTAAACCCACATTCATA
* *
8558588 CCTGATTCAAGCTTTCTTCAAATTTCATGGTTTTTTTATGCAATTAAAA-TTCTAAACTTTAATT
66 CCCGATTCAAGCTTTCTTCAAATTTCA-CGTTTTTTTATGCAA-TAAAACTTCTAAACTTTAATT
* *
8558652 AACA-ATAGATTTACTAAG-CCTATGCTTCAATTCGCATAAAAACAATATGAATCAACATAAATT
129 AACACATAGATTTACTAAGTCC-ATACTTCAATTCACATAAAAACAATATGAATCAACATAAATT
* * *
8558715 TAAGCAAAAAATTT-ATATTAAAAAACTTATACGTAATCTAATTTGGTTTTCTTTAAGTTTGGGC
193 TAAGC-AAAAATTTCATATTAAAAAACTTATACATAATCCAATTTAGTTTTCTTTAAGTTTGGGC
*
8558779 ATATAATCTAAAATTTTATGAAATTAAACATATTGTTCCATCTTTATAGCA-AGTGGGTAACATT
257 ATATAATCTAAAATTTTATGAAATTAAACATATTGTTCCATCTTTATAGCACA-TGGGTAACAAT
8558843 ATTCAAGAACCAATTTGAAAATCGTA
321 ATTCAAGAACCAATTTGAAAATCGTA
* * * * *
8558869 AAAAAAAAAGGAC-AAAAATAAACTAGTCGACCAAAAGAAATCGGGTTATTAAACCCACATTCAT
1 AAAAAAAAA-GACAAAAAATAAACCAATCAACCAAAAGAAATCAGATTATTAAACCCACATTCAT
*
8558933 ACCCGATTCAAGTTTTCTTCAAATTTCACGTTTTTTTATGCAATAAAACTTCTAAACTTTAATTA
65 ACCCGATTCAAGCTTTCTTCAAATTTCACGTTTTTTTATGCAATAAAACTTCTAAACTTTAATTA
8558998 ACACATAGATTTACTAAGTCCATACTTCAATTCACATAAAAACAATATGAATCAACATAAATTTA
130 ACACATAGATTTACTAAGTCCATACTTCAATTCACATAAAAACAATATGAATCAACATAAATTTA
* *
8559063 AGCAAAATTTTCATATTAAAAAACTTATACATAGTCCAATTTAGTTTTCTTTAAGTTTGGGCATA
195 AGCAAAAATTTCATATTAAAAAACTTATACATAATCCAATTTAGTTTTCTTTAAGTTTGGGCATA
* *
8559128 TAATCTAAAATTTTATGAAATTAAACATTTTGTTTCATCTTTATAGCACATGGGTAACAATATTC
260 TAATCTAAAATTTTATGAAATTAAACATATTGTTCCATCTTTATAGCACATGGGTAACAATATTC
8559193 AAGAACCAATTTGAA
325 AAGAACCAATTTGAA
8559208 TTAAAACCCA
Statistics
Matches: 311, Mismatches: 22, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
344 5 0.02
345 40 0.13
346 260 0.84
347 6 0.02
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (346 bp):
AAAAAAAAAGACAAAAAATAAACCAATCAACCAAAAGAAATCAGATTATTAAACCCACATTCATA
CCCGATTCAAGCTTTCTTCAAATTTCACGTTTTTTTATGCAATAAAACTTCTAAACTTTAATTAA
CACATAGATTTACTAAGTCCATACTTCAATTCACATAAAAACAATATGAATCAACATAAATTTAA
GCAAAAATTTCATATTAAAAAACTTATACATAATCCAATTTAGTTTTCTTTAAGTTTGGGCATAT
AATCTAAAATTTTATGAAATTAAACATATTGTTCCATCTTTATAGCACATGGGTAACAATATTCA
AGAACCAATTTGAAAATCGTA
Found at i:8561751 original size:15 final size:15
Alignment explanation
Indices: 8561728--8561770 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8561718 TTTCTGTTTC
*
8561728 TTTTACTTTCCTTTA
1 TTTTCCTTTCCTTTA
*
8561743 TTTTCCTTTCCTTTC
1 TTTTCCTTTCCTTTA
* *
8561758 TTTCCCTTCCCTT
1 TTTTCCTTTCCTT
8561771 AATCCAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTCCTTTCCTTTA
Found at i:8562720 original size:270 final size:274
Alignment explanation
Indices: 8562238--8562786 Score: 829
Period size: 270 Copynumber: 2.0 Consensus size: 274
8562228 TAATTTAAAA
* *
8562238 ATAATTCAAAAAACTAAATTGATTTATATTTATGTTTTTATTATTAACTTTAAATCACTCTCAAT
1 ATAATTCAAAAAACTAAATTGATCTATATTTATGTTTTTATTATCAACTTTAAATCACTCTCAAT
**
8562303 TCAATTCATATTAAAAGCATTAAAATTTTAAAAATTTCTTAATTTAACAAATTAAATCAATCAAT
66 TCAATTCATATTAAAAGCATTAAAATTTTAAAAAAATCTTAATTTAACAAATTAAATCAATCAAT
* * * *
8562368 ATATAACTAATAAATTAATAAATACTACAATTACAATTATAAAATAGTTGATTTTTTAATTAATT
131 ATATAACTAATAAATTAATAAATACAACAATTACAATTATAAAATAGTTGATTCTCTAAGTAATT
*
8562433 ATTTGATACATTTATATTTAATTAAATACAGTAT-C-T-AGTAATTGATGTCTTGCATACGTAAA
196 ATTTGATACATTTATATTTAATTAAATACAGTATCCTTGAGTAATTGATGTATTGCATACGTAAA
8562495 TATATAAAGCAAAT
261 TATATAAAGCAAAT
* * *
8562509 ATAATTCAAAAAACTAAATTGA-CTATATTTATGTTTTTATTGTCGATTTTAAATCACTCTCAAT
1 ATAATTCAAAAAACTAAATTGATCTATATTTATGTTTTTATTATCAACTTTAAATCACTCTCAAT
* * *
8562573 TCAATTCATATTAAAAGTATTAAAATTTTTAAAAAAAT-TTAATTTGATAAATTAAATCAATCAA
66 TCAATTCATATTAAAAGCATTAAAA-TTTTAAAAAAATCTTAATTTAACAAATTAAATCAATCAA
*
8562637 TATATAATTAATAAATTAATAAATACAACAATTACAATTATAAAATAGTTGATTCTCTAAGTAAT
130 TATATAACTAATAAATTAATAAATACAACAATTACAATTATAAAATAGTTGATTCTCTAAGTAAT
* * * * * **
8562702 TATTTGATACATTTATATTTGATTAATTATAGTATCCATTTGTGTAATTGATGTATTTCATGTGT
195 TATTTGATACATTTATATTTAATTAAATACAGTATCC--TTGAGTAATTGATGTATTGCATACGT
8562767 AAATATATAAAGCAAAT
258 AAATATATAAAGCAAAT
8562784 ATA
1 ATA
8562787 TCAAATTAAT
Statistics
Matches: 249, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
270 177 0.71
271 33 0.13
274 1 0.00
275 38 0.15
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.42
Consensus pattern (274 bp):
ATAATTCAAAAAACTAAATTGATCTATATTTATGTTTTTATTATCAACTTTAAATCACTCTCAAT
TCAATTCATATTAAAAGCATTAAAATTTTAAAAAAATCTTAATTTAACAAATTAAATCAATCAAT
ATATAACTAATAAATTAATAAATACAACAATTACAATTATAAAATAGTTGATTCTCTAAGTAATT
ATTTGATACATTTATATTTAATTAAATACAGTATCCTTGAGTAATTGATGTATTGCATACGTAAA
TATATAAAGCAAAT
Found at i:8563611 original size:658 final size:659
Alignment explanation
Indices: 8562525--8563845 Score: 2053
Period size: 658 Copynumber: 2.0 Consensus size: 659
8562515 CAAAAAACTA
* * * * *
8562525 AATTGACTATATTTATGTTTTTATTGTCGATTTTAAATCACTCTCAATTCAATTCATATTAAAAG
1 AATTGACTATATTTATGCTTTTATTATCAACTTTAAATCACTCTCAATTCAATTCATATTAAAAA
*
8562590 TATTAAAATTTTTAAAAAAATTTAATTTGATAAATTAAATCAATCAATATATAATTAATAAATTA
66 TATTAAAATTTTTAAAAAAATTTAATTTGACAAATTAAATCAATCAATATATAATTAATAAATTA
* * * *
8562655 ATAAATACAACAATTACAATTATAAAATAGTTGATTCTCTAAGTAATTATTTGATACATTTATAT
131 ATAAATACAACAATTACAATTATAAAATAATCGATTCACTAAGTAATTATTTAATACATTTATAT
* ** * * * *
8562720 TTGATTAATTATAGTATCCATTTGTGTAATTGATGTATTTCATGTGTAAATATATAAAGCAAATA
196 TTGATTAAATATAGTATCCATTTGAATAATTAATATATTTCATATGTAAATATAGAAAGCAAATA
* *
8562785 TATCAAATTAATTCTCCATAATTAAATTAATGGAATCAAATATTTTATTAATTTATATTTGATTG
261 TATCAAATTAATTCTCCACAATTAAATTAATGGAATAAAATATTTTATTAATTTATATTTGATTG
* *
8562850 ATACATTTATATTTTATTAAATATGATTTCATTTAATTTCATTTGATAAAATATTAATGCATGTT
326 ATACATTTATATTTCATTAAAGATGATTTCATTTAATTTCATTTGATAAAATATTAATGCATGTT
* ** * *
8562915 GATTTCATTTGTTTTCATTTGTAACGTTTTAAAATTTTATTAT-TTGATATTAATGCACGTTGAT
391 GATTTCATTTGATTTCATTTGTAACGTTTTAAAATTTTAAAATCTAGATATTAATGCACGTTAAT
* *
8562979 TTAATTAAAATTTAATATGTTTTATTGT-CATTATTAAATATAATAAATTTAATTTGTTTTATTG
456 TTAATTAAAATTTAATATGTTTTATT-TCCATTATTAAATACAATAAATTTAATTTGTTTTATTA
* *
8563043 TTCTAAATTAAG-TGATCTCTAAAAGTTAATGGTAGAATAAAATATTTTAATATCAATCAACTTG
520 TTCTAAATTAAGAT-ATCTCTAAAAGTTAATGGTAGAATAAAATATTTCAATATCAATCAACTTA
* * *
8563107 CCATTGTTAGACCCATTATTCACTCATAATTTTTATTATTTCAATATTAACTTTCAT-AATTTAA
584 CCATTGTTAGA-CCATTATTCACTCACAATTTTTATTATTTCAATACTAACTATCATAAATTTAA
8563171 AATTATCTTATC
648 AATTATCTTATC
*
8563183 AATTGACTATATTTATGCTTTTATTATTAACTTTAAATCA-TACTCAATTCAATTCATATTAAAA
1 AATTGACTATATTTATGCTTTTATTATCAACTTTAAATCACT-CTCAATTCAATTCATATTAAAA
*** *
8563247 ATATTAAAA-TTTTAAAATTTTCTTAATTTGACAAATTAAATCAATCAATATATAATTAATAATT
65 ATATTAAAATTTTTAAAAAAAT-TTAATTTGACAAATTAAATCAATCAATATATAATTAATAAAT
* * * *
8563311 TAATAAATGCTACAATTATAATTATAAAATAATCGATTCACTAATTAATTATTTAATACATTTAT
129 TAATAAATACAACAATTACAATTATAAAATAATCGATTCACTAAGTAATTATTTAATACATTTAT
* *
8563376 ATTTGATTAAATATAGTATCCATTTGAATAATTAATATATTTTATATGTAACTATAGAAAGCAAA
194 ATTTGATTAAATATAGTATCCATTTGAATAATTAATATATTTCATATGTAAATATAGAAAGCAAA
*
8563441 TGTATCAAATTAATTCTCCACAATTAAATTAATGGAATAAAATATTTTATTAATTTATATTTGAT
259 TATATCAAATTAATTCTCCACAATTAAATTAATGGAATAAAATATTTTATTAATTTATATTTGAT
* *
8563506 TGATAGATTTATATTTCATTAAAGATGATTTCATTTAATTTCATTTGGTAAAATATTAATGCAT-
324 TGATACATTTATATTTCATTAAAGATGATTTCATTTAATTTCATTTGATAAAATATTAATGCATG
* *
8563570 TTGGATTTCATTTGATTTCATTTGTAACGTTTTATAATTTTAAAATCTAGATATTAATGTACGTT
389 TT-GATTTCATTTGATTTCATTTGTAACGTTTTAAAATTTTAAAATCTAGATATTAATGCACGTT
*
8563635 AATTTAATTAAAATTTAATTTGTTTTATTTCCATTATTAAATACAATAAATTTAATTTGTTTTAT
453 AATTTAATTAAAATTTAATATGTTTTATTTCCATTATTAAATACAATAAATTTAATTTGTTTTAT
* *
8563700 TATTCTAAATTAAGATATCTCTAAATGTTAATGGTAGAATAAAATATTTCAATATCAATGAACTT
518 TATTCTAAATTAAGATATCTCTAAAAGTTAATGGTAGAATAAAATATTTCAATATCAATCAACTT
* *
8563765 ATCATTTTTAGACCATTATTCACTCACAATTTTTATTATTTCAATACTAACTATCATAAATTTAA
583 ACCATTGTTAGACCATTATTCACTCACAATTTTTATTATTTCAATACTAACTATCATAAATTTAA
8563830 AATTATCTTATC
648 AATTATCTTATC
8563842 AATT
1 AATT
8563846 AACTTGTAAC
Statistics
Matches: 602, Mismatches: 54, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
657 12 0.02
658 422 0.70
659 167 0.28
660 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (659 bp):
AATTGACTATATTTATGCTTTTATTATCAACTTTAAATCACTCTCAATTCAATTCATATTAAAAA
TATTAAAATTTTTAAAAAAATTTAATTTGACAAATTAAATCAATCAATATATAATTAATAAATTA
ATAAATACAACAATTACAATTATAAAATAATCGATTCACTAAGTAATTATTTAATACATTTATAT
TTGATTAAATATAGTATCCATTTGAATAATTAATATATTTCATATGTAAATATAGAAAGCAAATA
TATCAAATTAATTCTCCACAATTAAATTAATGGAATAAAATATTTTATTAATTTATATTTGATTG
ATACATTTATATTTCATTAAAGATGATTTCATTTAATTTCATTTGATAAAATATTAATGCATGTT
GATTTCATTTGATTTCATTTGTAACGTTTTAAAATTTTAAAATCTAGATATTAATGCACGTTAAT
TTAATTAAAATTTAATATGTTTTATTTCCATTATTAAATACAATAAATTTAATTTGTTTTATTAT
TCTAAATTAAGATATCTCTAAAAGTTAATGGTAGAATAAAATATTTCAATATCAATCAACTTACC
ATTGTTAGACCATTATTCACTCACAATTTTTATTATTTCAATACTAACTATCATAAATTTAAAAT
TATCTTATC
Found at i:8565761 original size:22 final size:22
Alignment explanation
Indices: 8565717--8565766 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
8565707 AAAAAATGCA
* * *
8565717 AAATATTAATTTTAAATTTATT
1 AAATAATAATTTTAAAATAATT
*
8565739 AAATAATATTTTTAAAATAATT
1 AAATAATAATTTTAAAATAATT
*
8565761 ATATAA
1 AAATAA
8565767 ATTAACTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAATTTTAAAATAATT
Found at i:8566229 original size:3 final size:3
Alignment explanation
Indices: 8566223--8566286 Score: 103
Period size: 3 Copynumber: 21.0 Consensus size: 3
8566213 ATAATAGTCT
8566223 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8566271 TAAA TAAA TAA -AA TAA
1 T-AA T-AA TAA TAA TAA
8566287 ACACTATCTT
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.03
3 50 0.85
4 7 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8566517 original size:18 final size:18
Alignment explanation
Indices: 8566492--8566537 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
8566482 CATTTGTGTT
8566492 TTAATTAAATTAA-TTGA
1 TTAATTAAATTAATTTGA
*
8566509 TTGAATTAATTTAATTTGA
1 TT-AATTAAATTAATTTGA
8566528 TTAA-TAAATT
1 TTAATTAAATT
8566538 GATTAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 7 0.28
18 12 0.48
19 6 0.24
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (18 bp):
TTAATTAAATTAATTTGA
Found at i:8566524 original size:27 final size:26
Alignment explanation
Indices: 8566491--8566547 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
8566481 ACATTTGTGT
**
8566491 TTTAATTAAATTAATTGATTGAATTAA
1 TTTAATTAAATTAATAAATTG-ATTAA
**
8566518 TTTAATTTGATTAATAAATTGATTAA
1 TTTAATTAAATTAATAAATTGATTAA
8566544 TTTA
1 TTTA
8566548 TCTTTCTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (26 bp):
TTTAATTAAATTAATAAATTGATTAA
Found at i:8566972 original size:21 final size:21
Alignment explanation
Indices: 8566948--8566990 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8566938 TCACACACAT
8566948 TGATATATGATCGTTTTTGAA
1 TGATATATGATCGTTTTTGAA
*
8566969 TGATATATGATGGTTTTTGAA
1 TGATATATGATCGTTTTTGAA
8566990 T
1 T
8566991 AGGTTTGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (21 bp):
TGATATATGATCGTTTTTGAA
Found at i:8569829 original size:28 final size:29
Alignment explanation
Indices: 8569764--8569829 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
8569754 ACCAAAATCC
*
8569764 CATCCAAATCACTAAAATTTAATTTGTCT
1 CATCAAAATCACTAAAATTTAATTTGTCT
* *
8569793 CATTAAAATCACTAAAATTT-ATTTAGTGT
1 CATCAAAATCACTAAAATTTAATTT-GTCT
8569822 -ATCAAAAT
1 CATCAAAAT
8569830 TGGTCATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (29 bp):
CATCAAAATCACTAAAATTTAATTTGTCT
Found at i:8571946 original size:22 final size:23
Alignment explanation
Indices: 8571906--8571948 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8571896 TTATTATTAT
*
8571906 TAATAACAATTAAATATTTATCC
1 TAATAACAATTAAACATTTATCC
*
8571929 TAATAA-ATTTAAACATTTAT
1 TAATAACAATTAAACATTTAT
8571949 GCATAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (23 bp):
TAATAACAATTAAACATTTATCC
Found at i:8573036 original size:22 final size:22
Alignment explanation
Indices: 8572983--8573036 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
8572973 TTTTGTCTTC
* *
8572983 TATTCTTTTTTTTTGGTATTTT
1 TATTATTTTGTTTTGGTATTTT
*
8573005 TCATTTTTTTGTTTT-GTATTTT
1 T-ATTATTTTGTTTTGGTATTTT
8573027 GTATTATTTT
1 -TATTATTTT
8573037 TGGTATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.76
Consensus pattern (22 bp):
TATTATTTTGTTTTGGTATTTT
Found at i:8573036 original size:23 final size:22
Alignment explanation
Indices: 8572983--8573055 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 22
8572973 TTTTGTCTTC
8572983 TATTCTTTTT-TTTTGGTATTTT-
1 TATT-TTTTTGTTTT-GTATTTTG
8573005 TCATTTTTTTGTTTTGTATTTTG
1 T-ATTTTTTTGTTTTGTATTTTG
8573028 TATTATTTTTGGTATTT-T-TTTTG
1 TATT-TTTTT-GT-TTTGTATTTTG
8573051 TATTT
1 TATTT
8573056 CGTATTTTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
22 17 0.38
23 22 0.49
24 3 0.07
25 3 0.07
ACGTcount: A:0.11, C:0.03, G:0.11, T:0.75
Consensus pattern (22 bp):
TATTTTTTTGTTTTGTATTTTG
Found at i:8573491 original size:34 final size:34
Alignment explanation
Indices: 8573444--8573535 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
8573434 TAAATTAAAG
* * *
8573444 AGATCGAGATTAAATCACGAATCGGAGAATAAGA
1 AGATCGGGATTAAACCACGAATCAGAGAATAAGA
*
8573478 AGATTGGGATTAAACCACGAATCAGAGAATAAGA
1 AGATCGGGATTAAACCACGAATCAGAGAATAAGA
*
8573512 AGATCGGGACTAAACCACGAATCA
1 AGATCGGGATTAAACCACGAATCA
8573536 AATATTAACG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.16
Consensus pattern (34 bp):
AGATCGGGATTAAACCACGAATCAGAGAATAAGA
Found at i:8573758 original size:69 final size:69
Alignment explanation
Indices: 8573499--8575011 Score: 1512
Period size: 69 Copynumber: 21.6 Consensus size: 69
8573489 AAACCACGAA
* * * *
8573499 TCAGAGAATAAGAA-GATCGGGACTAAACCACGAATCAAATATTAACGATGACTGGGACTGAACC
1 TCAGAGAATAA-AATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACC
8573563 GCAAG
65 GCAAG
* * * *
8573568 TCGAGAGAATTAATGAAATGATCGGGATTAAACCACGAGCCAAAGATTAAAGACGACTGGAACTA
1 TC-AGAGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTG
* **
8573633 AATCTTAAG
61 AACCGCAAG
* * *
8573642 TCA-AGAAATTAATGAAATAATCGGGATTAAATCACGAGTCAAAGATTAAAGATGACTGGGATTG
1 TCAGAG-AA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTG
*
8573706 AACCACAAG
61 AACCGCAAG
* * *
8573715 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAACGATTAAAGATGACTGGGACTAAACCA
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
8573780 CAAG
66 CAAG
* * *
8573784 TCAGAAAATTAATGAAATGACCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGATTGA
1 TCAGAGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGA
*
8573849 ACCACAAG
62 ACCGCAAG
* * * * *
8573857 TCAGAGAATGAAATGATCGAGATTAAACCACGAGTCAATGATTAAAGATGACTGGGATTGAACCA
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
8573922 CAAG
66 CAAG
* * * * * *
8573926 TCAGAGAATGAAATGACCAGGATTAAACCACGAGTCAATGACTAAAGATGACTGGGACTGAACCA
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
8573991 CAAG
66 CAAG
* * * * *
8573995 TC--AGAAT-GAATGACCGGGCTTAAACCGCGAGTCAAAGATTAAAGATGACTGGGACTGAACCA
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
*
8574057 CAAT
66 CAAG
** * *
8574061 TCAGAGAATTAATGAAATGATCGGGATTAAACTGCGAGTCAAAGATTAAAGATGACTGCGATTGA
1 TCAGAGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGA
*
8574126 ACCGTAAG
62 ACCGCAAG
* * * *
8574134 TC-GGGTAAT-TAGTGATCGGGATTAAACCACGAGTCAAAGATTAGAA-ATGACTGCGA-TGAAC
1 TCAGAG-AATAAAATGATCGGGATTAAACCACGAGTCAAAGATTA-AAGATGACTGGGACTGAAC
*
8574195 CACAAG
64 CGCAAG
* * * ** ** *
8574201 TC-GGGTAAT-TAATAATCGAAATTAAACCACGAGTCAAAGGA-TAAAGATGACTAAGACTGAAT
1 TCAGAG-AATAAAATGATCGGGATTAAACCACGAGTCAAA-GATTAAAGATGACTGGGACTGAAC
*
8574263 CACAAG
64 CGCAAG
* * * *
8574269 TCAGAGAATGAAATGACCGGGATTAAACCGCGAGTCAAAGATTAAATATGACTGGGACTGAACCG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
8574334 CAAG
66 CAAG
* ** *
8574338 TC-GAAGAATTGATGAAATGATCAGGATTAAACCGTGAGTCAAAGATTAAATATGACTGGGACTG
1 TCAG-AGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTG
8574402 AACCGCAAG
61 AACCGCAAG
* *
8574411 TCAG-GAAATTAATGAAATGATAGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTA
1 TCAGAG-AA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTG
*
8574475 AACCACAAG
61 AACCGCAAG
* * * * * *
8574484 TCAAAGAATAAAATAACCAGGATTAAACCATGAGTCAAAGATTAGAGATGACTGGGACTGAACCG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
*
8574549 TAAG
66 CAAG
* * ** * * * *
8574553 TCAGAGAATGAAATGATCGAGATTAAACCGTGAGTCAAAGATTAGAGATGACTGCGATTGAACTG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
*
8574618 TAAG
66 CAAG
* * *
8574622 TCAG-GTAAT-TAATGATCGAGATTAAACCACGAGTCAAAGA-TAAAGATGACTAGGACTGAACC
1 TCAGAG-AATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACC
*
8574684 GTAAG
65 GCAAG
* * * * * *
8574689 TCAGAGAATGAAATGATCGGGATTAAACCGCGAGTCAAAGATTAAATATGATTGAGATTGAACCG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
8574754 CAAG
66 CAAG
* * * ** *
8574758 TCAAAAAATTAATGAAATGACCGGGATTAAACCGTGAGTCAAAGATTAAAGATGACTGGGACTAA
1 TCAGAGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGA
8574823 ACCGCAAG
62 ACCGCAAG
* * *
8574831 TCAGAGAATAAAATGATCAGGATTAAACCATGAGTCAAAGATTAGAGATGACTGGGACTGAACCG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
*
8574896 TAAG
66 CAAG
* * * * * *
8574900 TTAGAGAATGAAATGATAGGGATTAAACCGCGAGTCAAGGATTAAAAATGACTGGGACTGAACCG
1 TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
*
8574965 CATG
66 CAAG
*
8574969 TCAGAGAATTAATGAAATGATCGGGATTAAACCGCGAGTCAAA
1 TCAGAGAA-T-A--AAATGATCGGGATTAAACCACGAGTCAAA
8575012 TTTATGCCCA
Statistics
Matches: 1232, Mismatches: 165, Indels: 90
0.83 0.11 0.06
Matches are distributed among these distances:
66 56 0.05
67 87 0.07
68 122 0.10
69 502 0.41
70 10 0.01
71 5 0.00
72 11 0.01
73 388 0.31
74 51 0.04
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (69 bp):
TCAGAGAATAAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCG
CAAG
Found at i:8573785 original size:142 final size:142
Alignment explanation
Indices: 8573513--8575011 Score: 1558
Period size: 142 Copynumber: 10.7 Consensus size: 142
8573503 AGAATAAGAA
* * * *
8573513 GATCGGGACTAAACCACGAATCAAATATTAACGATGACTGGGACTGAACCGCAAGTCGAGAGAAT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTC-AGAGAA-
* * * * * **
8573578 TAATGAAATGATCGGGATTAAACCACGAGCCAAAGATTAAAGACGACTGGAACTAAATCTTAAGT
64 T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGT
8573643 CAAGAAATTAATGAAAT
126 CAAGAAATTAATGAAAT
* * * *
8573660 AATCGGGATTAAATCACGAGTCAAAGATTAAAGATGACTGGGATTGAACCACAAGTCAGAGAATA
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* *
8573725 AAATGATCGGGATTAAACCACGAGTCAACGATTAAAGATGACTGGGACTAAACCACAAGTC-AGA
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAG-
8573789 AAATTAATGAAAT
130 AAATTAATGAAAT
* * * *
8573802 GACCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGATTGAACCACAAGTCAGAGAATG
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* * *
8573867 AAATGATCGAGATTAAACCACGAGTCAATGATTAAAGATGACTGGGATTGAACCACAAGTC-AG-
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
*
8573930 -A-GAATGAAAT
131 AATTAATGAAAT
* * * * *
8573940 GACCAGGATTAAACCACGAGTCAATGACTAAAGATGACTGGGACTGAACCACAAGTC--AGAAT-
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* * * * *
8574002 GAATGACCGGGCTTAAACCGCGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAATTC-AGA
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
8574066 GAATTAATGAAAT
131 -AATTAATGAAAT
** * * * *
8574079 GATCGGGATTAAACTGCGAGTCAAAGATTAAAGATGACTGCGATTGAACCGTAAGTC-GGGTAAT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAG-AAT
* * * **
8574143 -TAGTGATCGGGATTAAACCACGAGTCAAAGATTAGAA-ATGACTGCGA-TGAACCACAAGTCGG
65 AAAATGATCGGGATTAAACCACGAGTCAAAGATTA-AAGATGACTGGGACTGAACCACAAGTCAA
*
8574205 GTAATTAAT---A-
129 GAAATTAATGAAAT
** ** * *
8574215 -ATCGAAATTAAACCACGAGTCAAAGGA-TAAAGATGACTAAGACTGAATCACAAGTCAGAGAAT
1 GATCGGGATTAAACCACGAGTCAAA-GATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAAT
* * * * *
8574278 GAAATGACCGGGATTAAACCGCGAGTCAAAGATTAAATATGACTGGGACTGAACCGCAAGTCGAA
65 AAAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTC-AA
*
8574343 G-AATTGATGAAAT
129 GAAATTAATGAAAT
* ** *
8574356 GATCAGGATTAAACCGTGAGTCAAAGATTAAATATGACTGGGACTGAACCGCAAGTCAG-GAAAT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAG-AA-
* *
8574420 TAATGAAATGATAGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTAAACCACAAGT
64 T-A--AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGT
8574485 CAA-AGAA-T-A--AAAT
126 CAAGA-AATTAATGAAAT
* * * * * * *
8574498 AACCAGGATTAAACCATGAGTCAAAGATTAGAGATGACTGGGACTGAACCGTAAGTCAGAGAATG
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* ** * * * ***
8574563 AAATGATCGAGATTAAACCGTGAGTCAAAGATTAGAGATGACTGCGATTGAACTGTAAGTC-AG-
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
* *
8574626 --GTAAT-TAAT
131 AATTAATGAAAT
* * * *
8574635 GATCGAGATTAAACCACGAGTCAAAGA-TAAAGATGACTAGGACTGAACCGTAAGTCAGAGAATG
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* * * * * * *
8574699 AAATGATCGGGATTAAACCGCGAGTCAAAGATTAAATATGATTGAGATTGAACCGCAAGTCAAAA
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
8574764 AATTAATGAAAT
131 AATTAATGAAAT
* ** *
8574776 GACCGGGATTAAACCGTGAGTCAAAGATTAAAGATGACTGGGACTAAACCGCAAGTCAGAGAATA
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
* * * ** *
8574841 AAATGATCAGGATTAAACCATGAGTCAAAGATTAGAGATGACTGGGACTGAACCGTAAGT-TAG-
66 AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
*
8574904 -A-GAATGAAAT
131 AATTAATGAAAT
* * * * *
8574914 GATAGGGATTAAACCGCGAGTCAAGGATTAAAAATGACTGGGACTGAACCGCATGTCAGAGAATT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAA-T
*
8574979 AATGAAATGATCGGGATTAAACCGCGAGTCAAA
65 -A--AAATGATCGGGATTAAACCACGAGTCAAA
8575012 TTTATGCCCA
Statistics
Matches: 1148, Mismatches: 161, Indels: 91
0.82 0.12 0.06
Matches are distributed among these distances:
135 104 0.09
136 137 0.12
137 46 0.04
138 177 0.15
139 58 0.05
140 26 0.02
141 75 0.07
142 405 0.35
143 2 0.00
144 2 0.00
145 4 0.00
146 63 0.05
147 49 0.04
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (142 bp):
GATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAATA
AAATGATCGGGATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCACAAGTCAAGA
AATTAATGAAAT
Found at i:8575037 original size:24 final size:24
Alignment explanation
Indices: 8575010--8575060 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
8575000 CCGCGAGTCA
8575010 AATTTATGCCC-AGAGGTCTTACAG
1 AATTTATGCCCGA-AGGTCTTACAG
*
8575034 AA-TTGTGCCCGAAGGTCTTACAG
1 AATTTATGCCCGAAGGTCTTACAG
8575057 AATT
1 AATT
8575061 GACTGGGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AATTTATGCCCGAAGGTCTTACAG
Found at i:8575888 original size:21 final size:21
Alignment explanation
Indices: 8575862--8575903 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8575852 TCTTGCCCAC
*
8575862 TTTTTTTTATGAAAAATTTTT
1 TTTTTTTTATGAAAAAATTTT
*
8575883 TTTTTTTTTTGAAAAAATTTT
1 TTTTTTTTATGAAAAAATTTT
8575904 GTTTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTTTTTTATGAAAAAATTTT
Found at i:8577212 original size:16 final size:16
Alignment explanation
Indices: 8577182--8577215 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8577172 AATATGTCCA
**
8577182 TTTTGTTTTTTTTTTT
1 TTTTGTTTTCATTTTT
8577198 TTTTGTTTTCATTTTT
1 TTTTGTTTTCATTTTT
8577214 TT
1 TT
8577216 ATGCCCCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (16 bp):
TTTTGTTTTCATTTTT
Found at i:8577778 original size:11 final size:10
Alignment explanation
Indices: 8577749--8577777 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8577739 CAGAATTAAA
8577749 TTTTTTTTTC
1 TTTTTTTTTC
8577759 TTTTTTTTTC
1 TTTTTTTTTC
8577769 TTTTTTTTT
1 TTTTTTTTT
8577778 TAAAGTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:8580952 original size:69 final size:69
Alignment explanation
Indices: 8580785--8581311 Score: 492
Period size: 69 Copynumber: 7.5 Consensus size: 69
8580775 CATTTCATTA
* * * * * * *
8580785 ATTCTCTGAATTATGGTTCAGTTCCAGTCATCTTTAATCTTTGACTCGCGGTTTAAGCCC-AGTC
1 ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGA-TC
8580849 A-TTC
65 ATTTC
* * *
8580853 A-T-TCTGACTTGTGGTTCAGTCCCAGTCATCTTTAGTCATTGACTCGTGGTTTAATCCTGATCA
1 ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCA
8580916 TTTC
66 TTTC
* * *
8580920 ATTCTCTGACTTGTGGTTCAATCCCAATCATCTTTAATCATTGACTTGTGGTTTAATCCCGGTCA
1 ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCA
8580985 TTTC
66 TTTC
* * * *
8580989 ATTAATTTTCTGACTTGTGGTTTAGTCCCAATCATCTTTAATCGTTGACTCATGGTTTAATCCCG
1 ----ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCG
*
8581054 ATCATTTT
62 ATCATTTC
* * * *
8581062 ATTCTCTGACTTGTGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGATTA
1 ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCA
8581127 TTTC
66 TTTC
* * * * * * * * *
8581131 ATTAATTTCTTGACTTGCGATTTAGTTCCAGTCATCTTTAATCTTTGGCTCGTGGTTTAATCCCA
1 A-T--TCTC-TGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCG
*
8581196 ATAATTTC
62 ATCATTTC
* * * *
8581204 ATTAATTCTCTCGACTTGCGGTTCAGTCCCAATCATCGTTAAT-ATTTGATTCGTGGTTTAGTCC
1 ----ATTCTCT-GACTTGTGGTTCAGTCCCAATCATCTTTAATCA-TTGACTCGTGGTTTAATCC
*
8581268 CGATC-TTCTT
60 CGATCATT-TC
* * *
8581278 ATTCTCTGA-TTCGTGGTTTAATCCCAATCTTCTT
1 ATTCTCTGACTT-GTGGTTCAGTCCCAATCATCTT
8581312 ATTCTCTGAT
Statistics
Matches: 382, Mismatches: 57, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
66 51 0.13
67 6 0.02
68 4 0.01
69 140 0.37
70 8 0.02
72 3 0.01
73 119 0.31
74 49 0.13
76 1 0.00
77 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (69 bp):
ATTCTCTGACTTGTGGTTCAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCA
TTTC
Found at i:8581049 original size:142 final size:142
Alignment explanation
Indices: 8580854--8581311 Score: 536
Period size: 142 Copynumber: 3.2 Consensus size: 142
8580844 CAGTCATTCA
* * * *
8580854 TTCTGACTTGTGGTTCAGTCCCAGTCATCTTTAGTCATTGACTCGTGGTTTAATCCTGATCATTT
1 TTCTGACTTGTGGTTTAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCATTT
*
8580919 CATTCTCTGACTTGTGGTTCAATCCCAATCATCTTTAATCATTGACTTGTGGTTTAATCCCGGTC
66 CATTCTCTGACTTGTGGTTCAATCCCAATCATCTTTAATCATTGACTTGTGGTTTAATCCCGATC
8580984 ATTTCATTAATT
131 ATTTCATTAATT
* *
8580996 TTCTGACTTGTGGTTTAGTCCCAATCATCTTTAATCGTTGACTCATGGTTTAATCCCGATCATTT
1 TTCTGACTTGTGGTTTAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCATTT
* * * * *
8581061 TATTCTCTGACTTGTGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGATT
66 CATTCTCTGACTTGTGGTTCAATCCCAATCATCTTTAATCATTGACTTGTGGTTTAATCCCGATC
8581126 ATTTCATTAA-T
131 ATTTCATTAATT
* * * * * * * *
8581137 TTCTTGACTTGCGATTTAGTTCCAGTCATCTTTAATCTTTGGCTCGTGGTTTAATCCCAATAATT
1 TTC-TGACTTGTGGTTTAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCATT
* * * *
8581202 TCATTAATTCTCTCGACTTGCGGTTCAGTCCCAATCATCGTTAAT-ATTTGA-TTCGTGGTTTAG
65 TC----ATTCTCT-GACTTGTGGTTCAATCCCAATCATCTTTAATCA-TTGACTT-GTGGTTTAA
8581265 TCCCGATC--TTC-TT-ATT
123 TCCCGATCATTTCATTAATT
* * *
8581281 CTCTGA-TTCGTGGTTTAATCCCAATCTTCTT
1 TTCTGACTT-GTGGTTTAGTCCCAATCATCTT
8581312 ATTCTCTGAT
Statistics
Matches: 269, Mismatches: 37, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
141 4 0.01
142 183 0.68
143 20 0.07
144 5 0.02
145 3 0.01
146 8 0.03
147 46 0.17
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (142 bp):
TTCTGACTTGTGGTTTAGTCCCAATCATCTTTAATCATTGACTCGTGGTTTAATCCCGATCATTT
CATTCTCTGACTTGTGGTTCAATCCCAATCATCTTTAATCATTGACTTGTGGTTTAATCCCGATC
ATTTCATTAATT
Found at i:8581289 original size:34 final size:34
Alignment explanation
Indices: 8581250--8581341 Score: 148
Period size: 34 Copynumber: 2.7 Consensus size: 34
8581240 CGTTAATATT
*
8581250 TGATTCGTGGTTTAGTCCCGATCTTCTTATTCTC
1 TGATTCGTGGTTTAATCCCGATCTTCTTATTCTC
*
8581284 TGATTCGTGGTTTAATCCCAATCTTCTTATTCTC
1 TGATTCGTGGTTTAATCCCGATCTTCTTATTCTC
* *
8581318 TGATTCGTGATTTAATCTCGATCT
1 TGATTCGTGGTTTAATCCCGATCT
8581342 CTTTAATTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.16, C:0.22, G:0.15, T:0.47
Consensus pattern (34 bp):
TGATTCGTGGTTTAATCCCGATCTTCTTATTCTC
Found at i:8581752 original size:12 final size:11
Alignment explanation
Indices: 8581730--8581779 Score: 57
Period size: 12 Copynumber: 4.4 Consensus size: 11
8581720 ACAAAATACG
8581730 AAATACAAAAA
1 AAATACAAAAA
8581741 AAATACCAAAAA
1 AAATA-CAAAAA
*
8581753 TAATACAAAATA
1 AAATACAAAA-A
8581765 CAAA-ACAAAAA
1 -AAATACAAAAA
8581776 AAAT
1 AAAT
8581780 GAAAAATACC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 3 0.09
11 11 0.33
12 17 0.52
13 2 0.06
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (11 bp):
AAATACAAAAA
Found at i:8581773 original size:23 final size:23
Alignment explanation
Indices: 8581730--8581798 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
8581720 ACAAAATACG
8581730 AAATACAAAA-A-AAATACCAAAAA
1 AAATACAAAATACAAA-A-CAAAAA
*
8581753 TAATACAAAATACAAAACAAAAA
1 AAATACAAAATACAAAACAAAAA
*
8581776 AAATGA-AAAATACCAAA-AAAAA
1 AAAT-ACAAAATACAAAACAAAAA
8581798 A
1 A
8581799 GAACAGAAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 6 0.15
23 28 0.70
24 3 0.08
25 3 0.08
ACGTcount: A:0.77, C:0.12, G:0.01, T:0.10
Consensus pattern (23 bp):
AAATACAAAATACAAAACAAAAA
Found at i:8585388 original size:32 final size:33
Alignment explanation
Indices: 8585325--8585389 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
8585315 CTATTTTGTT
8585325 TTGCTTTTTTATTTTCCCTAAAAATCTTATTGC
1 TTGCTTTTTTATTTTCCCTAAAAATCTTATTGC
8585358 TTGCTTTTTTATTTTCCC-AGAAAATC-TATTGC
1 TTGCTTTTTTATTTTCCCTA-AAAATCTTATTGC
8585390 CCTAGCCTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 7 0.23
33 24 0.77
ACGTcount: A:0.22, C:0.18, G:0.08, T:0.52
Consensus pattern (33 bp):
TTGCTTTTTTATTTTCCCTAAAAATCTTATTGC
Found at i:8586331 original size:21 final size:21
Alignment explanation
Indices: 8586307--8586347 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8586297 TCTCAAACCT
8586307 ATTCAAAAACCATCATATATC
1 ATTCAAAAACCATCATATATC
*
8586328 ATTCAAAAACGATCATATAT
1 ATTCAAAAACCATCATATAT
8586348 GAATGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (21 bp):
ATTCAAAAACCATCATATATC
Found at i:8586807 original size:19 final size:19
Alignment explanation
Indices: 8586779--8586815 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8586769 TCAATTTATT
8586779 AATCAAATTAAATTAATTC
1 AATCAAATTAAATTAATTC
* *
8586798 AATCACATTAATTTAATT
1 AATCAAATTAAATTAATT
8586816 GAAACACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (19 bp):
AATCAAATTAAATTAATTC
Found at i:8586823 original size:19 final size:19
Alignment explanation
Indices: 8586785--8586823 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
8586775 TATTAATCAA
*
8586785 ATTAAATTAATTCAATCAC
1 ATTAAATTAATTCAAACAC
* *
8586804 ATTAATTTAATTGAAACAC
1 ATTAAATTAATTCAAACAC
8586823 A
1 A
8586824 AATGTAAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36
Consensus pattern (19 bp):
ATTAAATTAATTCAAACAC
Found at i:8587094 original size:3 final size:3
Alignment explanation
Indices: 8587033--8587083 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
8587023 ATTTATTTAT
8587033 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8587081 TTA
1 TTA
8587084 AGACTATTAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8589740 original size:10 final size:10
Alignment explanation
Indices: 8589725--8589753 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8589715 AAAACGTTAC
8589725 AAATGAAATA
1 AAATGAAATA
8589735 AAATGAAATA
1 AAATGAAATA
8589745 AAATGAAAT
1 AAATGAAAT
8589754 CCAAATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (10 bp):
AAATGAAATA
Found at i:8590582 original size:650 final size:652
Alignment explanation
Indices: 8589472--8590783 Score: 1960
Period size: 650 Copynumber: 2.0 Consensus size: 652
8589462 GTTACAAGTT
* * *
8589472 AATTAATAAGATAATTTTAAATTTATGATAGTTAGTATTGAAATAATAAAAATTGTGAGTGAATA
1 AATTAATAAGATAATTTTAAATTTATGAAAGTTAATATTGAAATAATAAAAATTATGAGTGAATA
*
8589537 ATGGTCTAAAAATGACAAGTTCATTGATATTGAAATATTTTATTCTACCATTAACATTTAGAGAT
66 ATGGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGAT
* *
8589602 ATCTTAATTTAGAATAATAAAACAAATTAAATTTATTGTATTTAATAATGGAAATAAAACAAATT
131 ATCTTAATTTAGAACAATAAAACAAATTAAATTTATTATATTTAATAATGGAAATAAAACAAATT
* * **
8589667 AAATTTTAATTAAATTAACGTACATTAATATCTAGATTTTAAAATTATAAAACGTTACAAATGAA
196 AAATTTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAATGAA
8589732 ATAAAATGAAATAAAATGAAATCCAAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCA
261 ATAAAATG----AAAATGAAA-CC-AATGCATTAATATTTTACCAAATGAAATTAAATGAAATCA
* * *
8589797 TCTTTAATGAAATATAAATCTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTT
320 TATTTAATAAAATATAAATCTATCAATCAAATATAAATTAATAAAATATTTGATTCCATTAATTT
* * * * * **
8589862 AATTGTGGAGAATTAATTTGATACATTTGCTTTCTATAGTTACATATAAAATATATTAATTATTC
385 AATTATGGAGAATTAATTTGATACATTTGCTTTATATAGTTACACATAAAATACATCAATTACAC
* * * *
8589927 AAATGGATACTATATTTAATCAAATATAAATGTATTAAATAATTAATTAGTGAATCAATTATTTT
450 AAATGGATACTATAATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTT
*
8589992 ATAATTATAATTGTAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATT
515 ATAATTATAATTGTAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATT
* * * * * *
8590057 AAGAAAATTTTAAAATTTTTAATATGAATTGAATTGAGTA-TGGTTTAAAGTTAATAATAAAAGC
580 ---AAAATTTTAAAACTTTTAATATGAATTGAATTGAG-AGTGATTTAAAATCAACAATAAAAAC
8590121 ATAAATATAGTC
641 ATAAATATAGTC
*
8590133 AATTGATAAGATAATTTTAAA-TTATGAAAGTTAATATTGAAATAATAAAAATTATGAGTGAATA
1 AATTAATAAGATAATTTTAAATTTATGAAAGTTAATATTGAAATAATAAAAATTATGAGTGAATA
* * * *
8590197 ATGGGTCTAACAATGGCAAGTTGATTGATATTAAAATATTTTATTCTACCATTAACTTTTAGAGA
66 AT-GGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGA
*
8590262 TCA-CTTAATTTAGAACAATAAAACAAATTAAATTTATTATATTTAATAAT-GACAATAAAACAT
130 T-ATCTTAATTTAGAACAATAAAACAAATTAAATTTATTATATTTAATAATGGA-AATAAAACAA
* *
8590325 ATTAAATTTTAATTAAATCAACGTGCATTAATATC-AAATAATAAAATTTTAAAACGTTACAAAT
193 ATTAAATTTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAAT
* *
8590389 GAAA-ACAAATG-AAAT-CAA-C-ATGCATTAATATTTTATCAAATGAAATTAAATGAAATCATA
258 GAAATA-AAATGAAAATGAAACCAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCATA
*
8590449 TTTAATAAAATATAAATGTATCAATCAAATATAAATTAATAAAATATTTGATTCCATTAATTTAA
322 TTTAATAAAATATAAATCTATCAATCAAATATAAATTAATAAAATATTTGATTCCATTAATTTAA
* * *
8590514 TTATGGAGAATTAATTTGATATATTTGCTTTATATATTTACACATGAAATACATCAATTACACAA
387 TTATGGAGAATTAATTTGATACATTTGCTTTATATAGTTACACATAAAATACATCAATTACACAA
*
8590579 ATGGATACTATAATTAATCAAATATAAATGTATCAAATAATTACTTAGAGAATCAACTATTTTAT
452 ATGGATACTATAATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTTAT
* * * *
8590644 AATTGTAATTGTTGTATTTATTAATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAA
517 AATTATAATTGTAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATTAA
* *
8590709 AATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCGACAATAAAAACATAAAT
582 AATTTTAAAACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAAT
8590774 ATAGTC
647 ATAGTC
8590780 AATT
1 AATT
8590784 TAGTTTTTTG
Statistics
Matches: 594, Mismatches: 52, Indels: 24
0.89 0.08 0.04
Matches are distributed among these distances:
646 1 0.00
647 67 0.11
650 274 0.46
652 1 0.00
654 2 0.00
655 4 0.01
659 1 0.00
660 78 0.13
661 165 0.28
662 1 0.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (652 bp):
AATTAATAAGATAATTTTAAATTTATGAAAGTTAATATTGAAATAATAAAAATTATGAGTGAATA
ATGGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGAT
ATCTTAATTTAGAACAATAAAACAAATTAAATTTATTATATTTAATAATGGAAATAAAACAAATT
AAATTTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAATGAA
ATAAAATGAAAATGAAACCAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCATATTTA
ATAAAATATAAATCTATCAATCAAATATAAATTAATAAAATATTTGATTCCATTAATTTAATTAT
GGAGAATTAATTTGATACATTTGCTTTATATAGTTACACATAAAATACATCAATTACACAAATGG
ATACTATAATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTTATAATT
ATAATTGTAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATTAAAATT
TTAAAACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAATATAG
TC
Found at i:8591560 original size:15 final size:15
Alignment explanation
Indices: 8591540--8591584 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
8591530 TTGGTTTAAG
*
8591540 GGAAAGGGAAAGAAA
1 GGAAAGGAAAAGAAA
*
8591555 GGAAAGGAAAATAAA
1 GGAAAGGAAAAGAAA
*
8591570 GGAAAGTAAAAGAAA
1 GGAAAGGAAAAGAAA
8591585 CAGAAAAACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.04
Consensus pattern (15 bp):
GGAAAGGAAAAGAAA
Found at i:8592166 original size:5 final size:5
Alignment explanation
Indices: 8592156--8592188 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
8592146 AAAACTTTAT
8592156 TTTCC TTTCC TTTCC TTTCC TTT-C TGTTCC TTT
1 TTTCC TTTCC TTTCC TTTCC TTTCC T-TTCC TTT
8592189 ATAAATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 2 0.08
5 22 0.85
6 2 0.08
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (5 bp):
TTTCC
Found at i:8594739 original size:347 final size:347
Alignment explanation
Indices: 8594101--8594788 Score: 1071
Period size: 347 Copynumber: 2.0 Consensus size: 347
8594091 TGGGTTTTAA
*
8594101 TTCAAATTGGTTCTTGAATATTGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
1 TTCAAATTGGTTCTTGAATAATGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
* * *
8594166 TAAAATTTCAGATTATATGCCCAAACTTAAAGAAAACTAAATTGGACTATGTATAAGTTTTTTAA
66 TAAAATTTCAGATTATATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTAA
* *
8594231 TATGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGTGAATTGAAGTATGGACTT
131 TATGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATGGACTT
*
8594296 AGTAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACGTGAAATTTGAAGA
196 AGTAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACATGAAATTTGAAGA
* * * *
8594361 AAACTTGAATCGGGTATGAATGTGGGTTTAATAACCCGATTTCTTTTGGTCGACTAGTCTATTTT
261 AAACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCTATTTT
8594426 TGTCCTTTTTTTTTTTACGATT
326 TGTCCTTTTTTTTTTTACGATT
* *
8594448 TTCAAATTGGTTCTTGAATAATGTTACCCACT-TGCTATAAAGATGGAACAATATGTTTAATTTC
1 TTCAAATTGGTTCTTGAATAATGTTACCCA-TGTGCTATAAAGATGAAACAAAATGTTTAATTTC
* * *
8594512 ATAAAATTTTAGATTATATGCCCAAACTTAAAGAAAACCAAATTAGATTACGTATAATTTTTTTA
65 ATAAAATTTCAGATTATATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTA
* *
8594577 ATCT-AAATTTTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATAGG-
130 ATATGAAA-ATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCAT-GGA
8594640 CTTAGTAAATCTAT-TGTTAATTAAAGTTTAGAA-TTTTAATTGCATAAAAAAACCATGAAATTT
193 CTTAGTAAATCTATGTGTTAATTAAAGTTTAGAAGTTTT-ATTGCATAAAAAAA-CATGAAATTT
* * * * * *
8594703 GAAGAAAGCTTGAATCAGGTATGAATATGAGTTTAATAATATGATTTCTTTTGGTTGATTGGTCT
256 GAAGAAAACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCT
*
8594768 ATTTTTGTCTTTTTTTTTTTT
321 ATTTTTGTCCTTTTTTTTTTT
8594789 TTTTTGCAGT
Statistics
Matches: 311, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
345 4 0.01
346 36 0.12
347 268 0.86
348 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (347 bp):
TTCAAATTGGTTCTTGAATAATGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
TAAAATTTCAGATTATATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTAA
TATGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATGGACTT
AGTAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACATGAAATTTGAAGA
AAACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCTATTTT
TGTCCTTTTTTTTTTTACGATT
Found at i:8595540 original size:21 final size:21
Alignment explanation
Indices: 8595526--8595574 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
8595516 TAAACAAAAT
8595526 ACTCTTTAAAATAAAAATAAC
1 ACTCTTTAAAATAAAAATAAC
*
8595547 ACTCCTTAAAATAAAAATAAC
1 ACTCTTTAAAATAAAAATAAC
8595568 ACTCTTT
1 ACTCTTT
8595575 GTGAAAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (21 bp):
ACTCTTTAAAATAAAAATAAC
Found at i:8596965 original size:23 final size:21
Alignment explanation
Indices: 8596915--8596954 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8596905 GTTAATTTTT
8596915 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
8596936 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
8596955 TACCAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:8604575 original size:15 final size:15
Alignment explanation
Indices: 8604552--8604598 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8604542 TGTTTGGATT
* *
8604552 AAGGGAAGGGAAAGA
1 AAGGAAAGGAAAAGA
*
8604567 AAGGAAAGGAAAATA
1 AAGGAAAGGAAAAGA
*
8604582 AAGGAAAGTAAAAGA
1 AAGGAAAGGAAAAGA
8604597 AA
1 AA
8604599 CAGAAAAACC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04
Consensus pattern (15 bp):
AAGGAAAGGAAAAGA
Found at i:8607748 original size:346 final size:346
Alignment explanation
Indices: 8607113--8607798 Score: 1053
Period size: 346 Copynumber: 2.0 Consensus size: 346
8607103 TGGGTTTTAA
*
8607113 TTCAAATTGGTTCTTGAATATTGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
1 TTCAAATTGGTTCTTGAATAATGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
* * *
8607178 TAAAATTTTAGATTATGCCCAAACTTAAAGAAAACTAAATTGGACTATGTATAAGTTTTTTAATA
66 TAAAATTTTAGATTATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTAATA
* *
8607243 TGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGTGAATTGAAGTATGGACTTAG
131 TGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATGGACTTAG
*
8607308 TAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACGTGAAATTTGAAGAAA
196 TAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACATGAAATTTGAAGAAA
* * * * *
8607373 ACTTGAATCGGGTATGAATGTGGGTTTAATAACCCGATTTCTTTTGGTCGACTAGTTTA-TTTTT
261 ACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCTATTTTTT
*
8607437 GTC-CTTTTTTTTTTACGATT
326 GTCTATTTTTTTTTTACGATT
* *
8607457 TTCAAATTGGTTCTTGAATAATGTTACCCACT-TGCTATAAAGATGGAACAATATGTTTAATTTC
1 TTCAAATTGGTTCTTGAATAATGTTACCCA-TGTGCTATAAAGATGAAACAAAATGTTTAATTTC
*
8607521 ATAAAATTTTAGATTATATGCCCAAACTTAAAGAAAACCAAATTAGATTACGTATAAGTTTTTTA
65 ATAAAATTTTAGA-T-TATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTA
*
8607586 ATAT-AAATTTTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATAGG-
128 ATATGAAA-ATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCAT-GGA
8607649 CTTAGTAAATCTAT-TGTTAATTAAAGTTTAGAA-TTTTAATTGCATAAAAAAACCATGAAATTT
191 CTTAGTAAATCTATGTGTTAATTAAAGTTTAGAAGTTTT-ATTGCATAAAAAAA-CATGAAATTT
* * * * * *
8607712 GAAGAAAGCTTGAATCAGGTATGAATATGAGTTTAATAATATGATTTCTTTTGGTTGATTGGTCT
254 GAAGAAAACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCT
8607777 ATTTTTTGTCTATTTTTTTTTT
319 ATTTTTTGTCTATTTTTTTTTT
8607799 TTTTGCAGTT
Statistics
Matches: 310, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
344 76 0.25
345 38 0.12
346 176 0.57
347 10 0.03
348 10 0.03
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (346 bp):
TTCAAATTGGTTCTTGAATAATGTTACCCATGTGCTATAAAGATGAAACAAAATGTTTAATTTCA
TAAAATTTTAGATTATGCCCAAACTTAAAGAAAACCAAATTAGACTACGTATAAGTTTTTTAATA
TGAAAATTTTGCTTAAATTTATGTTGATTCATATTGTTTTTATGCGAATTGAAGCATGGACTTAG
TAAATCTATGTGTTAATTAAAGTTTAGAAGTTTTATTGCATAAAAAAACATGAAATTTGAAGAAA
ACTTGAATCAGGTATGAATATGAGTTTAATAACACGATTTCTTTTGGTCGACTAGTCTATTTTTT
GTCTATTTTTTTTTTACGATT
Found at i:8608763 original size:14 final size:15
Alignment explanation
Indices: 8608746--8608780 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
8608736 TCTAAAATAC
8608746 AAAAAAAAAGAA-AA
1 AAAAAAAAAGAACAA
*
8608760 AAAAAAACAGAACAA
1 AAAAAAAAAGAACAA
8608775 AAAAAA
1 AAAAAA
8608781 TTAGAGATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.89, C:0.06, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAACAA
Found at i:8608766 original size:24 final size:24
Alignment explanation
Indices: 8608713--8608766 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
8608703 ATTATTAAAT
* *
8608713 AAAAAATACAAAAAAATACAAAAT
1 AAAAAATACAAAAAAAAACAAAAA
** *
8608737 CTAAAATACAAAAAAAAAGAAAAA
1 AAAAAATACAAAAAAAAACAAAAA
8608761 AAAAAA
1 AAAAAA
8608767 CAGAACAAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.81, C:0.07, G:0.02, T:0.09
Consensus pattern (24 bp):
AAAAAATACAAAAAAAAACAAAAA
Found at i:8609775 original size:16 final size:15
Alignment explanation
Indices: 8609727--8609779 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
8609717 GCTTTGACTG
8609727 TATATTATTTTTTAA
1 TATATTATTTTTTAA
* *
8609742 TTTTCTTATTTTTT-A
1 -TATATTATTTTTTAA
8609757 TATATTATTTTATTAA
1 TATATTATTTT-TTAA
8609773 TAT-TTAT
1 TATATTAT
8609780 GCATATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 9 0.29
15 7 0.23
16 15 0.48
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (15 bp):
TATATTATTTTTTAA
Found at i:8609899 original size:23 final size:21
Alignment explanation
Indices: 8609849--8609888 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8609839 GTTAATTTTT
8609849 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
8609870 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
8609889 TACCAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:8617058 original size:49 final size:49
Alignment explanation
Indices: 8617004--8617236 Score: 342
Period size: 49 Copynumber: 4.8 Consensus size: 49
8616994 GAACATATGA
*
8617004 GAGATTTTAAAGTTGTTGAGCCTCTATTGAGAGGAGCTCTTTTCAAAAT
1 GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTCTTTTCAAAAT
* * *
8617053 GAGATTTTAAAGTTGTTGAGCCTCTACTAAGAGGAGCCCTTTTCAAGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTCTTTTCAAAAT
* * *
8617102 GAAATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCT-TTTCCAAGAT
1 GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTCTTTTCAAAAT
* ** *
8617150 AAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCCCTTTTCAAAAT
1 GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTCTTTTCAAAAT
**
8617199 GAGATTTTAAAGTTGTTGAGCCTCTGGTGAGAGGAGCT
1 GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCT
8617237 TGTTGTTGAA
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 42 0.25
49 123 0.75
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (49 bp):
GAGATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTCTTTTCAAAAT
Found at i:8617241 original size:28 final size:28
Alignment explanation
Indices: 8617210--8617265 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8617200 AGATTTTAAA
*
8617210 GTTGTTGAGCCTCTGGTGAGAGGAGCTT
1 GTTGTTGAACCTCTGGTGAGAGGAGCTT
*
8617238 GTTGTTGAACCTCTGTTGAGAGGAGCTT
1 GTTGTTGAACCTCTGGTGAGAGGAGCTT
8617266 TTTCAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.36, T:0.34
Consensus pattern (28 bp):
GTTGTTGAACCTCTGGTGAGAGGAGCTT
Found at i:8617344 original size:122 final size:125
Alignment explanation
Indices: 8617113--8617359 Score: 331
Period size: 122 Copynumber: 2.0 Consensus size: 125
8617103 AAATTTTAAA
* * *
8617113 GTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTTGTTGAGCCTCTGTT
1 GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTAGTTGAGCCTCTATT
* * * * *
8617178 GAGAGGAGCCCTTTTCAAAATGAGATTTTAAAGTTGTTGAGCCTCTGGTGAGAGGAGCTT
66 AAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTT
** *
8617238 GTTGTTGAACCTCTGTTGAGAGGAGCTTTTTCAAGA-AA-ATTTTTAAAGTAGTTGAGCCTCTAT
1 GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGA-TTTTAAAGTAGTTGAGCCTCTAT
* * *
8617301 TAAGAAGTG-CTTTTTCAAGATG-GATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTT
65 TAAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTT
8617360 TTCCAGATAA
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 34 0.32
123 12 0.11
124 29 0.27
125 32 0.30
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.35
Consensus pattern (125 bp):
GTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAGATAAGATTTTAAAGTAGTTGAGCCTCTATT
AAGAAGAGCCCTTTTCAAAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGAAGCTT
Found at i:8617444 original size:50 final size:49
Alignment explanation
Indices: 8617238--8617918 Score: 594
Period size: 50 Copynumber: 13.8 Consensus size: 49
8617228 AGAGGAGCTT
* *
8617238 GTTGTTGAACCTCTGTTGAGAGGAG-CTTTTTCA-A-GAAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGATG-AAATTTTTAAA
* ** * * * *
8617285 GTAGTTGAGCCTCTATTAAGAAGTG-CTTTTTCAAGATG-GA-TTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC-AGATGAAATTTTTAAA
* * * *
8617332 GTTATTGAGCCTCTGCTGAGAGAAG-CTTTTCCAGAT-AAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGATGAAATTTTTAAA
* * * *
8617379 ATCGTTGAGCCTTTGCTGAGAGGAGCCCTTTTTAAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAG-CCTTTTTCAGATGAAATTTTTAAA
* * * * * * *
8617429 GTTATTAAGCTTTTGCTGAGAGGAGTCTTTTTCAGATTTTAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGA--TGAAATTTTTAAA
*
8617480 GTTGTTGAGCCTCTGTTGAGAGGAG-CTTTTTCAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGATGAAATTTTTAAA
* * * * * *
8617528 GTCGTTGAGCTTCTACTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTC-AGATGAAATTTTTAAA
* * * * *
8617578 GTTGTTGAACCTCTGCTGAGAAGAGTCTTTTTCAGATTTTAAATTTTCAAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGA--TGAAATTTT-TAAA
* * *
8617630 GTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTTCAGATTTTAAAATTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCC-TTTTTCAGA--TGAAATTTTTAAA
* ** * *
8617682 GTTGTTGAGCCTATATTAAGAGGAG-CTTTTTTAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGATGAAATTTTTAAA
* * * *
8617730 GTCGTTGAGCTTCTGCTAAGAGGAG-CTCTTTTCAAGATGAGATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCT-TTTTC-AGATGAAATTTTTAAA
* * * * *
8617780 GTTGTTGAACCTCTACTGAGAAGAGTCTTTTTCAGATTTTAAATTTTTAAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGA--TGAAATTTTT-AAA
* * *
8617832 GTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTAAGATGAAATTTTTAAA
1 GTTGTTGAGCCTCTGCTGAGAGGAG-CCTTTTTCAGATGAAATTTTTAAA
*
8617882 GTTGTTGAGCCTCTGATGAGAGGAGTCC-TTTTCAGAT
1 GTTGTTGAGCCTCTGCTGAGAGGAG-CCTTTTTCAGAT
8617919 TTTAAATTTT
Statistics
Matches: 510, Mismatches: 101, Indels: 44
0.78 0.15 0.07
Matches are distributed among these distances:
46 5 0.01
47 83 0.16
48 66 0.13
49 43 0.08
50 155 0.30
51 58 0.11
52 72 0.14
53 28 0.05
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (49 bp):
GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAGATGAAATTTTTAAA
Found at i:8617677 original size:202 final size:199
Alignment explanation
Indices: 8617273--8617918 Score: 806
Period size: 202 Copynumber: 3.2 Consensus size: 199
8617263 CTTTTTCAAG
* * * * **
8617273 AAAATTTTTAAAGTAGTTGAGCCTCTATTAAGAAGTGCTTTTTCAAGATG-GA-TTTTAAAGTTA
1 AAAA-TTTTAAAGTTGTTGAGCCTCTATTAAGAGGAGCTTTTTC-AGATGAAATTTTTAAAGTCG
* * * * * * * * * *
8617336 TTGAGCCTCTGCTGAGAGAAG-CTTTTCCAGAT-AAAATTTTAAAATCGTTGAGCCTTTGCTGAG
64 TTGAGCTTCTGCTAAGAGGAGCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTGCTGAG
* * * * * * * *
8617399 AGGAGCCCTTTTTAAGA--TGAAATTTTTAAAGTTATTAAGCTTTTGCTGAGAGGAGTCTTTTTC
129 AAGAG-TCTTTTTCAGATTTTAAATTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGCCTTTTTC
8617462 AGATTTT
193 AGATTTT
* *
8617469 AAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
1 AAAATTTTAAAGTTGTTGAGCCTCTATTAAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
*
8617534 GAGCTTCTACTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTGCTGAGA
66 GAGCTTCTGCTAAGAGGAG-CCTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTGCTGAGA
*
8617599 AGAGTCTTTTTCAGATTTTAAATTTTCAAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTTC
130 AGAGTCTTTTTCAGATTTTAAATTTT-AAAAGTTGTTAAGCCTTTGCTGAGAGGAGCC-TTTTTC
8617664 AGATTTT
193 AGATTTT
* *
8617671 AAAATTTTAAAGTTGTTGAGCCTATATTAAGAGGAGCTTTTTTAGATGAAATTTTTAAAGTCGTT
1 AAAATTTTAAAGTTGTTGAGCCTCTATTAAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
*
8617736 GAGCTTCTGCTAAGAGGAGCTCTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTACTGAGA
66 GAGCTTCTGCTAAGAGGAGC-CTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTGCTGAGA
*
8617801 AGAGTCTTTTTCAGATTTTAAATTTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGCCCTTTTTA
130 AGAGTCTTTTTCAGATTTTAAA-TTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAG-CCTTTTTC
*
8617866 AGA--TG
193 AGATTTT
* * *
8617871 AAATTTTTAAAGTTGTTGAGCCTCTGA-TGAGAGGAGTCCTTTTCAGAT
1 AAAATTTTAAAGTTGTTGAGCCTCT-ATTAAGAGGAG-CTTTTTCAGAT
8617919 TTTAAATTTT
Statistics
Matches: 394, Mismatches: 42, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
194 5 0.01
195 35 0.09
196 30 0.08
198 19 0.05
199 29 0.07
200 40 0.10
201 37 0.09
202 193 0.49
203 6 0.02
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.39
Consensus pattern (199 bp):
AAAATTTTAAAGTTGTTGAGCCTCTATTAAGAGGAGCTTTTTCAGATGAAATTTTTAAAGTCGTT
GAGCTTCTGCTAAGAGGAGCCTTTTCAAGATGAGATTTTTAAAGTTGTTGAACCTCTGCTGAGAA
GAGTCTTTTTCAGATTTTAAATTTTAAAAGTTGTTAAGCCTTTGCTGAGAGGAGCCTTTTTCAGA
TTTT
Found at i:8617954 original size:102 final size:101
Alignment explanation
Indices: 8617324--8617959 Score: 570
Period size: 102 Copynumber: 6.3 Consensus size: 101
8617314 TTCAAGATGG
* * * * * * * *
8617324 ATTTT-AAAGTTATTGAGCCTCTGCTGAGAGAAG--CTTTTCCAGAT-AAAATTTTAAAATCGTT
1 ATTTTAAAAGTTGTTAAGCTTCTGCTGAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTTGTT
* * * * *
8617385 GAGCCTTTGCTGAGAGGAGCCCTTTTTAAGA--TGAA
66 GAGCCTCTGATGAGAGGAG-TCTTTTTCAGATTTTAA
* * * * * * *
8617420 ATTTTTAAAGTTATTAAGCTTTTGCTGAGAGGAGTCTTTTTC-AGATTTTAAAATTTTAAAGTTG
1 ATTTTAAAAGTTGTTAAGCTTCTGCTGAGAGGAGCCCTTTTCAAGA--TGAAATTTTTAAAGTTG
* *
8617484 TTGAGCCTCTGTTGAGAGGAG-CTTTTTCAGA--TGAA
64 TTGAGCCTCTGATGAGAGGAGTCTTTTTCAGATTTTAA
* * * * * *
8617519 ATTTTTAAAGTCGTTGAGCTTCTACTAAGAGGAGCCCTTTTCAAGATGAGATTTTTAAAGTTGTT
1 ATTTTAAAAGTTGTTAAGCTTCTGCTGAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTTGTT
* * *
8617584 GAACCTCTGCTGAGAAGAGTCTTTTTCAGATTTTAA
66 GAGCCTCTGATGAGAGGAGTCTTTTTCAGATTTTAA
* * * *
8617620 ATTTTCAAAAGTTGTTAAGCCTCTGCTGAGAGGAGCCTTTTTTC-AGATTTTAAAATTTTAAAGT
1 ATTTT-AAAAGTTGTTAAGCTTCTGCTGAGAGGAGCC-CTTTTCAAGA--TGAAATTTTTAAAGT
* * * *
8617684 TGTTGAGCCTAT-ATTAAGAGGAG-CTTTTTTAGA--TGAA
62 TGTTGAGCCTCTGA-TGAGAGGAGTCTTTTTCAGATTTTAA
* * * * * *
8617721 ATTTTTAAAGTCGTTGAGCTTCTGCTAAGAGGAGCTCTTTTCAAGATGAGATTTTTAAAGTTGTT
1 ATTTTAAAAGTTGTTAAGCTTCTGCTGAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTTGTT
* *
8617786 GAACCTCT-ACTGAGAAGAGTCTTTTTCAGATTTTAA
66 GAGCCTCTGA-TGAGAGGAGTCTTTTTCAGATTTTAA
*
8617822 ATTTTTAAAAGTTGTTAAGCCTT-TGCTGAGAGGAGCCCTTTTTAAGATGAAATTTTTAAAGTTG
1 A-TTTTAAAAGTTGTTAAG-CTTCTGCTGAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTTG
*
8617886 TTGAGCCTCTGATGAGAGGAGTCCTTTTCAGATTTTAA
64 TTGAGCCTCTGATGAGAGGAGTCTTTTTCAGATTTTAA
* *
8617924 ATTTTCAAAAGTTGTCAAGCTTCAAG-TGAGAGGAGC
1 ATTTT-AAAAGTTGTTAAGCTTC-TGCTGAGAGGAGC
8617960 ATTTTCGATT
Statistics
Matches: 444, Mismatches: 71, Indels: 44
0.79 0.13 0.08
Matches are distributed among these distances:
96 5 0.01
97 24 0.05
98 65 0.15
99 76 0.17
100 32 0.07
101 59 0.13
102 135 0.30
103 19 0.04
104 29 0.07
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (101 bp):
ATTTTAAAAGTTGTTAAGCTTCTGCTGAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAGTTGTT
GAGCCTCTGATGAGAGGAGTCTTTTTCAGATTTTAA
Found at i:8618207 original size:25 final size:25
Alignment explanation
Indices: 8618155--8618214 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
8618145 AAATATTATT
* * *
8618155 AAATATAAAATACAAGAAAAATACA
1 AAATACAAAATACAAAAAAAAGACA
*
8618180 AAATACAAAATACCAAAAAAAAGAAA
1 AAATACAAAATA-CAAAAAAAAGACA
*
8618206 AAAAACAAA
1 AAATACAAA
8618215 CAAACAGAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.77, C:0.10, G:0.03, T:0.10
Consensus pattern (25 bp):
AAATACAAAATACAAAAAAAAGACA
Found at i:8619234 original size:10 final size:10
Alignment explanation
Indices: 8619219--8619245 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8619209 AAAAAAAATT
8619219 TTTTTTTGAA
1 TTTTTTTGAA
8619229 TTTTTTTGAA
1 TTTTTTTGAA
8619239 TTTTTTT
1 TTTTTTT
8619246 ATATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:8619371 original size:20 final size:21
Alignment explanation
Indices: 8619338--8619377 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8619328 GTTAACTTTT
*
8619338 AAAATGAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
8619359 AAAATAAAC-TTAATAATAA
1 AAAATAAACTTTAAAAATAA
8619378 TACCAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:8619915 original size:18 final size:18
Alignment explanation
Indices: 8619892--8619955 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 18
8619882 ATATATATTT
8619892 TTATTACTATTTTTTAGA
1 TTATTACTATTTTTTAGA
*
8619910 TTA-T--TATTATTT---
1 TTATTACTATTTTTTAGA
*
8619922 TTATTACTATTTTTCAGA
1 TTATTACTATTTTTTAGA
*
8619940 TTATTATTATTTTTTA
1 TTATTACTATTTTTTA
8619956 AGCATTTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 12
0.67 0.10 0.23
Matches are distributed among these distances:
12 3 0.09
13 1 0.03
15 13 0.37
17 1 0.03
18 17 0.49
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.66
Consensus pattern (18 bp):
TTATTACTATTTTTTAGA
Found at i:8619917 original size:15 final size:16
Alignment explanation
Indices: 8619894--8619952 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 16
8619884 ATATATTTTT
8619894 ATTACTATT-TTTTAG
1 ATTACTATTATTTTAG
* *
8619909 ATTATTATTATTTT-T
1 ATTACTATTATTTTAG
*
8619924 ATTACTATT-TTTCAG
1 ATTACTATTATTTTAG
*
8619939 ATTATTATTATTTT
1 ATTACTATTATTTT
8619953 TTAAGCATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 3 0.09
15 24 0.71
16 7 0.21
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (16 bp):
ATTACTATTATTTTAG
Found at i:8619923 original size:30 final size:30
Alignment explanation
Indices: 8619875--8619953 Score: 131
Period size: 30 Copynumber: 2.6 Consensus size: 30
8619865 TTCGAGGATG
*
8619875 AGATTATATATATATTTTTATTACTATTTTTT
1 AGATTAT-TAT-TATTTTTATTACTATTTTTC
8619907 AGATTATTATTATTTTTATTACTATTTTTC
1 AGATTATTATTATTTTTATTACTATTTTTC
8619937 AGATTATTATTATTTTT
1 AGATTATTATTATTTTT
8619954 TAAGCATTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 36 0.78
31 3 0.07
32 7 0.15
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (30 bp):
AGATTATTATTATTTTTATTACTATTTTTC
Found at i:8620375 original size:23 final size:25
Alignment explanation
Indices: 8620293--8620377 Score: 77
Period size: 24 Copynumber: 3.4 Consensus size: 25
8620283 GGGTTGGCGG
* * *
8620293 GTCTCCCATGCCTAA-AAATCCTAA
1 GTCTCCCATGCCCAAGAAACCCCAA
*
8620317 GTCTCTCAGATGCCCAAGAAACCCCAA
1 GTCTC-C-CATGCCCAAGAAACCCCAA
* *
8620344 GTCTCCCATGCCC-AGAAACCTCTA
1 GTCTCCCATGCCCAAGAAACCCCAA
8620368 G-CTCCCATGC
1 GTCTCCCATGC
8620378 TACAACAACC
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 9 0.18
24 15 0.29
25 7 0.14
26 8 0.16
27 12 0.24
ACGTcount: A:0.28, C:0.39, G:0.13, T:0.20
Consensus pattern (25 bp):
GTCTCCCATGCCCAAGAAACCCCAA
Found at i:8621155 original size:3 final size:3
Alignment explanation
Indices: 8621149--8621196 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
8621139 TGTTGTTTTG
* * *
8621149 TAA TAA TAA TTAA TAA TAA TAA TGA TAA TAA CAA CAA TAA TAA -AA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8621194 TAA
1 TAA
8621197 CGATTTCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:8621594 original size:30 final size:30
Alignment explanation
Indices: 8621560--8621760 Score: 125
Period size: 30 Copynumber: 6.9 Consensus size: 30
8621550 TTAAAATTCA
8621560 AAACCCTCCAAACACTAAAA-CTAAAACCTT
1 AAACCCTCCAAACACTAAAATC-AAAACCTT
** * *
8621590 AAACCCTTTAAACCCTAAAATCAAAATCTT
1 AAACCCTCCAAACACTAAAATCAAAACCTT
** **
8621620 AAACATTTTAAAC-CTTAAAATCAAAACCTT
1 AAACCCTCCAAACAC-TAAAATCAAAACCTT
* * *
8621650 AAA-TC-CCAAACTCTAAAATCAAAACCCT
1 AAACCCTCCAAACACTAAAATCAAAACCTT
*
8621678 AAA-CC-CCAAACCCTAAAA-CTAAAACCTT
1 AAACCCTCCAAACACTAAAATC-AAAACCTT
* *
8621706 AAA-CCTCCAAA-TC-AAAATACTAAAACCCT
1 AAACCCTCCAAACACTAAAAT-C-AAAACCTT
* ** *
8621735 AAACCTTTTAAACAATAAAATCAAAA
1 AAACCCTCCAAACACTAAAATCAAAA
8621761 TCCTAAAATA
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
27 5 0.04
28 47 0.34
29 19 0.14
30 61 0.44
31 2 0.01
32 5 0.04
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (30 bp):
AAACCCTCCAAACACTAAAATCAAAACCTT
Found at i:8621669 original size:28 final size:28
Alignment explanation
Indices: 8621567--8621716 Score: 133
Period size: 28 Copynumber: 5.2 Consensus size: 28
8621557 TCAAAACCCT
*
8621567 CCAAACACTAAAA-CTAAAACCTTAAACC
1 CCAAACCCTAAAATC-AAAACCTTAAACC
* * *
8621595 CTTTAAACCCTAAAATCAAAATCTTAAACATT
1 C--CAAACCCTAAAATCAAAACCTTAAAC--C
** * *
8621627 TTAAACCTTAAAATCAAAACCTTAAATC
1 CCAAACCCTAAAATCAAAACCTTAAACC
* *
8621655 CCAAACTCTAAAATCAAAACCCTAAACC
1 CCAAACCCTAAAATCAAAACCTTAAACC
8621683 CCAAACCCTAAAA-CTAAAACCTTAAACC
1 CCAAACCCTAAAATC-AAAACCTTAAACC
8621711 TCCAAA
1 -CCAAA
8621717 TCAAAATACT
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.01
28 47 0.48
29 5 0.05
30 44 0.45
31 1 0.01
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (28 bp):
CCAAACCCTAAAATCAAAACCTTAAACC
Found at i:8621798 original size:15 final size:14
Alignment explanation
Indices: 8621657--8621856 Score: 84
Period size: 14 Copynumber: 13.8 Consensus size: 14
8621647 CTTAAATCCC
*
8621657 AAACTCTAAAA-TCA
1 AAACCCTAAAACT-A
* **
8621671 AAACCCTAAACCCC
1 AAACCCTAAAACTA
8621685 AAACCCTAAAACTA
1 AAACCCTAAAACTA
* * *
8621699 AAACCTTAAACCTCC
1 AAACCCTAAAACT-A
* *
8621714 AAA-TCAAAATACTA
1 AAACCCTAAA-ACTA
* *
8621728 AAACCCTAAACCTTTT
1 AAACCCTAAAAC--TA
**
8621744 AAACAATAAAA-TCA
1 AAACCCTAAAACT-A
*
8621758 AAATCCTAAAA-TAA
1 AAACCCTAAAACT-A
8621772 AAACCCTAAAAACTGA
1 AAACCCT-AAAACT-A
*
8621788 AAACCCTAAAACCTT
1 AAACCCTAAAA-CTA
* *
8621803 AAACCCTCAAATTA
1 AAACCCTAAAACTA
*
8621817 AAACCCTAAAACCTT
1 AAACCCTAAAA-CTA
* *
8621832 AAACCCTCAAATTA
1 AAACCCTAAAACTA
*
8621846 AAAGCCTAAAA
1 AAACCCTAAAA
8621857 GCCTAAACCT
Statistics
Matches: 134, Mismatches: 41, Indels: 22
0.68 0.21 0.11
Matches are distributed among these distances:
13 1 0.01
14 75 0.56
15 38 0.28
16 20 0.15
ACGTcount: A:0.53, C:0.28, G:0.01, T:0.18
Consensus pattern (14 bp):
AAACCCTAAAACTA
Done.