Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 38 of 138
Found at i:8621822 original size:29 final size:29
Alignment explanation
Indices: 8621787--8621870 Score: 136
Period size: 29 Copynumber: 2.9 Consensus size: 29
8621777 CTAAAAACTG
8621787 AAAACCCTAAAACCTTAAACCCTCAAATT
1 AAAACCCTAAAACCTTAAACCCTCAAATT
8621816 AAAACCCTAAAACCTTAAACCCTCAAATT
1 AAAACCCTAAAACCTTAAACCCTCAAATT
*
8621845 AAAAGCCTAAAAGCC-TAAA-CCTCAAA
1 AAAACCCTAAAA-CCTTAAACCCTCAAA
8621871 AAATTTAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
28 7 0.13
29 44 0.83
30 2 0.04
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.18
Consensus pattern (29 bp):
AAAACCCTAAAACCTTAAACCCTCAAATT
Found at i:8628769 original size:18 final size:19
Alignment explanation
Indices: 8628748--8628790 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8628738 TGATTTTAAC
8628748 AAAAA-CAAGTTTTTTATT
1 AAAAATCAAGTTTTTTATT
**
8628766 AAAAATGTAGTTTTTTATT
1 AAAAATCAAGTTTTTTATT
*
8628785 GAAAAT
1 AAAAAT
8628791 ATATTATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (19 bp):
AAAAATCAAGTTTTTTATT
Found at i:8628984 original size:13 final size:13
Alignment explanation
Indices: 8628966--8628998 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8628956 AAATGTTGCC
8628966 TATTATAAAAATA
1 TATTATAAAAATA
*
8628979 TATTATGAAAATA
1 TATTATAAAAATA
8628992 -ATTATAA
1 TATTATAA
8628999 TATATTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
TATTATAAAAATA
Found at i:8629043 original size:20 final size:20
Alignment explanation
Indices: 8629008--8629066 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
8628998 ATATATTTTC
* *
8629008 ATAATTTACATGTTAAATAA
1 ATAAATTACATATTAAATAA
*
8629028 ATAAATTATATATTAAATAA
1 ATAAATTACATATTAAATAA
* *
8629048 ATAATTTACATTTTAAATA
1 ATAAATTACATATTAAATA
8629067 TAGTATATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAAATTACATATTAAATAA
Found at i:8629378 original size:17 final size:19
Alignment explanation
Indices: 8629356--8629419 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 19
8629346 TTAAAAAAAT
8629356 ATAAATTA-T-CATGTTAA
1 ATAAATTATTACATGTTAA
8629373 ATAAATTATTTACATGTTAA
1 ATAAATTA-TTACATGTTAA
* *
8629393 ATAAATAAATA-AT-TTAA
1 ATAAATTATTACATGTTAA
8629410 ATATAATTAT
1 ATA-AATTAT
8629420 ATATCATGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 15 0.38
18 6 0.15
19 3 0.08
20 15 0.38
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
ATAAATTATTACATGTTAA
Found at i:8637017 original size:6 final size:7
Alignment explanation
Indices: 8636991--8637025 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
8636981 ATGCTTGAAA
8636991 AAAAATGG
1 AAAAAT-G
8636999 AAAAATG
1 AAAAATG
8637006 AAAAAATG
1 -AAAAATG
8637014 AAAAATG
1 AAAAATG
8637021 AAAAA
1 AAAAA
8637026 AATTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 13 0.50
8 13 0.50
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.11
Consensus pattern (7 bp):
AAAAATG
Found at i:8637026 original size:8 final size:8
Alignment explanation
Indices: 8636990--8637026 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
8636980 TATGCTTGAA
8636990 AAAAAATG
1 AAAAAATG
*
8636998 GAAAAATG
1 AAAAAATG
8637006 AAAAAATG
1 AAAAAATG
8637014 -AAAAATG
1 AAAAAATG
8637021 AAAAAA
1 AAAAAA
8637027 ATTAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:8637027 original size:16 final size:16
Alignment explanation
Indices: 8636989--8637034 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
8636979 CTATGCTTGA
8636989 AAAAAAATGGAAAAATG
1 AAAAAAAT-GAAAAATG
8637006 -AAAAAATGAAAAATG
1 AAAAAAATGAAAAATG
*
8637021 AAAAAAATTAAAAA
1 AAAAAAATGAAAAA
8637035 AAAAGTGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (16 bp):
AAAAAAATGAAAAATG
Found at i:8637033 original size:15 final size:15
Alignment explanation
Indices: 8636990--8637026 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
8636980 TATGCTTGAA
8636990 AAAAAATGGAAAAATG
1 AAAAAAT-GAAAAATG
8637006 AAAAAATGAAAAATG
1 AAAAAATGAAAAATG
8637021 AAAAAA
1 AAAAAA
8637027 ATTAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.11
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:8638103 original size:41 final size:43
Alignment explanation
Indices: 8638041--8638214 Score: 212
Period size: 43 Copynumber: 4.1 Consensus size: 43
8638031 ATGATTGTCA
* * *
8638041 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCTGATTAG
*
8638082 AGGAGCAATTTA-CTTT-TCAAAGTTGTTGAGCCTCTGATTAG
1 AGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCTGATTAG
* * * *
8638123 AAGAGCTATTTATGTTTCTCAAAGTCGTTGAGCTTCTGATTAG
1 AGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCTGATTAG
* * *
8638166 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTGCTTAG
1 AGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCTGATTAG
*
8638209 AAGAGC
1 AGGAGC
8638215 TTTGGTTAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
41 46 0.40
42 3 0.03
43 67 0.58
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
AGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCTGATTAG
Found at i:8638166 original size:84 final size:85
Alignment explanation
Indices: 8638054--8638215 Score: 229
Period size: 84 Copynumber: 1.9 Consensus size: 85
8638044 AGCAATTTAC
* * *
8638054 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTT-TCAAAGTTGTTGAGCCTCT
1 TTTCCAAAGTCGTGGAGCCTCTGATTAGAGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCT
8638117 GATTAGAAGAGCTATTTATG
66 GATTAGAAGAGCTATTTATG
* * * *
8638137 TTTCTCAAAGTCGTTGAGCTTCTGATTAGAGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTC
1 TTTC-CAAAGTCGTGGAGCCTCTGATTAGAGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTC
*
8638202 TGCTTAGAAGAGCT
65 TGATTAGAAGAGCT
8638216 TTGGTTAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
83 4 0.06
84 31 0.46
85 3 0.04
86 30 0.44
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (85 bp):
TTTCCAAAGTCGTGGAGCCTCTGATTAGAGGAGCAATTTATCTTTCTCAAAGTCGTTGAGCCTCT
GATTAGAAGAGCTATTTATG
Found at i:8638248 original size:10 final size:9
Alignment explanation
Indices: 8638221--8638254 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8638211 GAGCTTTGGT
8638221 TAAAAAAAA
1 TAAAAAAAA
*
8638230 CAAAAAAAA
1 TAAAAAAAA
8638239 TAAAATAAAA
1 TAAAA-AAAA
8638249 TAAAAA
1 TAAAAA
8638255 TGTCGAGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:8638437 original size:22 final size:22
Alignment explanation
Indices: 8638402--8638449 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
8638392 CCAATTTGGC
8638402 TTTTATTTTGTATTTTATATTAT
1 TTTTATTTTGTATTTTATATT-T
8638425 TTTTATTTT-TATTTTATATTT
1 TTTTATTTTGTATTTTATATTT
8638446 TTTT
1 TTTT
8638450 CTTCATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 5 0.20
22 11 0.44
23 9 0.36
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTTATTTTGTATTTTATATTT
Found at i:8638481 original size:4 final size:4
Alignment explanation
Indices: 8638463--8638626 Score: 74
Period size: 4 Copynumber: 41.0 Consensus size: 4
8638453 CATTTGTATC
* * * *
8638463 TTAT GTAT TTA- TTAT TTAT TTAT TTA- TTAT TACTAT GTAT TAAT ATAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT TTAT TTAT
* * * * * * *
8638511 GTAT ATCT TTAT TTAT TTAT TT-T TTTT GTTA- ATAT TTAT ATAT GTATT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTA-T
* *
8638559 TTAT TTAT TTAG TTAT ATAT TTA- TTAT TATAT TATAAT TTAT TTA- TTA-
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT T-TAT T-T-AT TTAT TTAT TTAT
*
8638607 TTAT TT-T TATTT TTAT TTAT
1 TTAT TTAT T-TAT TTAT TTAT
8638627 CTTGTAATGT
Statistics
Matches: 123, Mismatches: 23, Indels: 28
0.71 0.13 0.16
Matches are distributed among these distances:
3 22 0.18
4 81 0.66
5 14 0.11
6 6 0.05
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (4 bp):
TTAT
Found at i:8638616 original size:34 final size:33
Alignment explanation
Indices: 8638519--8638626 Score: 98
Period size: 34 Copynumber: 3.2 Consensus size: 33
8638509 ATGTATATCT
* * *
8638519 TTATTTATTTATTTTTTTTGTTA-ATATTTATATA
1 TTATTTA-TAATTTATTTAGTTATATATTTAT-TA
8638553 TGTATTT-T-ATTTATTTAGTTATATATTTATTA
1 T-TATTTATAATTTATTTAGTTATATATTTATTA
* *
8638585 TTATATTATAATTTATTTA-TTATTATTTTTATTT
1 TTAT-TTATAATTTATTTAGTTA-TATATTTATTA
8638619 TTATTTAT
1 TTATTTAT
8638627 CTTGTAATGT
Statistics
Matches: 64, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
31 3 0.05
32 16 0.25
33 17 0.27
34 23 0.36
35 5 0.08
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (33 bp):
TTATTTATAATTTATTTAGTTATATATTTATTA
Found at i:8638624 original size:77 final size:81
Alignment explanation
Indices: 8638477--8638647 Score: 194
Period size: 77 Copynumber: 2.2 Consensus size: 81
8638467 GTATTTATTA
* * *
8638477 TTTATTTATTTATTATTACTATGTATTAATATATGTATATCTTTATTTATTTATTTTTTTTGTTA
1 TTTATTTATTTATTATTACTATGTATTAATATATGTATATATTTATTTATTTATTATTTTTATTA
8638542 ATATTTATATATGTAT
66 ATATTTATATATGTAT
* *
8638558 TTTATTTATTTAGTTA-TA-TATTTATTATTATAT-TATA-ATTTATTTA-TTATTATTTTTATT
1 TTTATTTATTTA-TTATTACTATGTATTAATATATGTATATATTTATTTATTTATTATTTTTATT
** *
8638618 TTTATTTATCT-TGTAAT
65 AATATTTATATATGT-AT
8638635 GTTT-TTTATTTAT
1 -TTTATTTATTTAT
8638648 CTTATTATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
76 4 0.05
77 30 0.38
78 11 0.14
79 4 0.05
80 13 0.16
81 14 0.18
82 3 0.04
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (81 bp):
TTTATTTATTTATTATTACTATGTATTAATATATGTATATATTTATTTATTTATTATTTTTATTA
ATATTTATATATGTAT
Found at i:8638626 original size:16 final size:16
Alignment explanation
Indices: 8638414--8638623 Score: 77
Period size: 15 Copynumber: 12.9 Consensus size: 16
8638404 TTATTTTGTA
*
8638414 TTTTATATTATTTTTAT
1 TTTTAT-TTATTATTAT
8638431 TTTTATTT-TATATT-T
1 TTTTATTTAT-TATTAT
* *
8638446 TTTTCTTCATT-TGTAT
1 TTTTATTTATTAT-TAT
8638462 CTTATGTATTTATTATT-T
1 -TT-T-TATTTATTATTAT
*
8638480 ATTTATTTATTATTACT
1 TTTTATTTATTATTA-T
* * *
8638497 ATGTATTAATATATGTAT
1 TTTTATTTAT-TAT-TAT
8638515 ATCTTTATTTA-T-TTAT
1 -T-TTTATTTATTATTAT
*
8638531 TTTT-TTTGTTA--AT
1 TTTTATTTATTATTAT
* *
8638544 ATTTATATATGTATT-T
1 TTTTATTTAT-TATTAT
8638560 TATTTATTTAGTTATATAT
1 T-TTTATTTA-TTAT-TAT
8638579 TTATTA-TTA-TATTAT
1 TT-TTATTTATTATTAT
*
8638594 AATTTATTTATTATTAT
1 -TTTTATTTATTATTAT
8638611 TTTTATTT-TTATT
1 TTTTATTTATTATT
8638624 TATCTTGTAA
Statistics
Matches: 146, Mismatches: 19, Indels: 58
0.65 0.09 0.26
Matches are distributed among these distances:
13 8 0.05
14 8 0.05
15 35 0.24
16 26 0.18
17 35 0.24
18 13 0.09
19 14 0.10
20 7 0.05
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTATTTATTATTAT
Found at i:8638644 original size:81 final size:80
Alignment explanation
Indices: 8638477--8638655 Score: 197
Period size: 81 Copynumber: 2.2 Consensus size: 80
8638467 GTATTTATTA
*
8638477 TTTATTTATTTATTATTACTATGTATTAATATATGTATATCTTTATTTATTTATTTTTTTTGTTA
1 TTTATTTATTTATTA-TACTATGTATTAATATATGTATATATTTATTTATTTATTTTTTTTGTTA
8638542 ATATTTATATATGTAT
65 ATATTTATATATGTAT
* *
8638558 TTTATTTATTTAGTTATA-TATTTATTATTATAT-TATA-ATTTATTTATTATTATTTTTATTT-
1 TTTATTTATTTA-TTATACTATGTATTAATATATGTATATATTTATTTA-T-TTATTTTT-TTTG
* * *
8638619 TTATTTATCTTGTA-ATGTTT
62 TTA-ATAT-TTATATATGTAT
8638639 TTTATTTATCTTATTAT
1 TTTATTTAT-TTATTAT
8638656 TTTTTTTAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
78 8 0.09
79 5 0.06
80 24 0.28
81 38 0.45
82 10 0.12
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.66
Consensus pattern (80 bp):
TTTATTTATTTATTATACTATGTATTAATATATGTATATATTTATTTATTTATTTTTTTTGTTAA
TATTTATATATGTAT
Found at i:8638657 original size:12 final size:11
Alignment explanation
Indices: 8638463--8638626 Score: 87
Period size: 11 Copynumber: 15.1 Consensus size: 11
8638453 CATTTGTATC
*
8638463 TTATGTATTTA
1 TTATTTATTTA
8638474 TTATTTATTTA
1 TTATTTATTTA
8638485 TT-TATTA-TTA
1 TTAT-TTATTTA
* * *
8638495 CTATGTATTAA
1 TTATTTATTTA
*
8638506 TATATGTATATCT-
1 T-TAT-T-TATTTA
8638519 TTATTTATTTA
1 TTATTTATTTA
*
8638530 TT-TTT-TTTG
1 TTATTTATTTA
*
8638539 TTA-ATATTTA
1 TTATTTATTTA
*
8638549 TATATGTA-TT-
1 T-TATTTATTTA
8638559 TTATTTATTTA
1 TTATTTATTTA
*
8638570 GTTATATATTTA
1 -TTATTTATTTA
8638582 TTA-TTATATTA
1 TTATTTAT-TTA
*
8638593 TAATTTATTTA
1 TTATTTATTTA
*
8638604 TTATTATTTTTA
1 TTATT-TATTTA
8638616 TT-TTTATTTA
1 TTATTTATTTA
8638626 T
1 T
8638627 CTTGTAATGT
Statistics
Matches: 116, Mismatches: 20, Indels: 35
0.68 0.12 0.20
Matches are distributed among these distances:
9 11 0.09
10 30 0.26
11 42 0.36
12 29 0.25
13 1 0.01
14 3 0.03
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:8638660 original size:21 final size:21
Alignment explanation
Indices: 8638596--8638681 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
8638586 TATATTATAA
*
8638596 TTTATTTATTATTATT-TTTATT
1 TTTATTTA-TCTTATTATTT-TT
* * *
8638618 TTTATTTATCTTGTAATGTTT
1 TTTATTTATCTTATTATTTTT
8638639 TTTATTTATCTTATTATTTTT
1 TTTATTTATCTTATTATTTTT
* *
8638660 TTTAATTATC-TGTTATTTTT
1 TTTATTTATCTTATTATTTTT
8638680 TT
1 TT
8638682 ATTCGTTTAT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
20 11 0.20
21 33 0.61
22 10 0.19
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (21 bp):
TTTATTTATCTTATTATTTTT
Found at i:8638679 original size:39 final size:42
Alignment explanation
Indices: 8638596--8638680 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
8638586 TATATTATAA
* *
8638596 TTTATTTATTATTATTTTTATTTTTATTTATCTTGTAATGTTT
1 TTTATTTATTATTATTTTTATTTTTAATTATCTTGT-ATATTT
*
8638639 TTTATTTA-TCTTATTATTT-TTTTTAATTATC-TGT-TATTT
1 TTTATTTATTATTATT-TTTATTTTTAATTATCTTGTATATTT
8638678 TTT
1 TTT
8638681 TATTCGTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
39 7 0.18
41 3 0.08
42 17 0.45
43 11 0.29
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (42 bp):
TTTATTTATTATTATTTTTATTTTTAATTATCTTGTATATTT
Found at i:8639647 original size:6 final size:6
Alignment explanation
Indices: 8639627--8639705 Score: 60
Period size: 6 Copynumber: 13.5 Consensus size: 6
8639617 TTTAATGTTC
* * *
8639627 TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTACT TTTT-T TTGTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT
*
8639673 TTTCAT TTTTAT TTTGT-T TTATTA- TTTTAT TTT
1 TTTTAT TTTTAT TTT-TAT TT-TTAT TTTTAT TTT
8639706 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
5 15 0.26
6 36 0.63
7 6 0.11
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:8639647 original size:17 final size:16
Alignment explanation
Indices: 8639627--8639705 Score: 70
Period size: 17 Copynumber: 4.6 Consensus size: 16
8639617 TTTAATGTTC
8639627 TTTTATCTTTATTTTAT
1 TTTTAT-TTTATTTTAT
*
8639644 TTTTATTTTTGTTTTACT
1 TTTTA-TTTTATTTTA-T
8639662 TTTT-TTTGTATTTTCAT
1 TTTTATTT-TATTTT-AT
*
8639679 TTTTATTTTGTTTTATT
1 TTTTATTTTATTTTA-T
8639696 ATTTTATTTT
1 -TTTTATTTT
8639706 CTTTAAATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
16 4 0.08
17 29 0.56
18 19 0.37
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:8639682 original size:24 final size:24
Alignment explanation
Indices: 8639627--8639705 Score: 69
Period size: 23 Copynumber: 3.4 Consensus size: 24
8639617 TTTAATGTTC
* *
8639627 TTTTATCTTTATTTTATTTT--TA
1 TTTTATTTTTATTTTGTTTTAGTA
8639649 TTTT-TGTTTTACTTTT-TTTT-GTA
1 TTTTAT-TTTTA-TTTTGTTTTAGTA
*
8639672 TTTTCATTTTTATTTTGTTTTATTA
1 TTTT-ATTTTTATTTTGTTTTAGTA
8639697 TTTTATTTT
1 TTTTATTTT
8639706 CTTTAAATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
21 1 0.02
22 12 0.25
23 14 0.29
24 14 0.29
25 7 0.15
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTATTTTTATTTTGTTTTAGTA
Found at i:8639877 original size:59 final size:57
Alignment explanation
Indices: 8639731--8640357 Score: 844
Period size: 59 Copynumber: 10.6 Consensus size: 57
8639721 AAAAAAAAGT
* *
8639731 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT-TTTAAAAAATAAATTTTAAAAAA
1 AATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTCAAAAA
** * * * * *
8639789 AAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCCAAAA
1 AATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAA
8639848 AATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAA
*
8639907 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATCAAAGTTTTC-AAAA
1 AATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTCAAAAA
* * *
8639966 ACTATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCGTAAAAATAAATTTTTCCAAAAA
1 AATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTT-CAAAAA
8640026 AATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAA
* * *
8640085 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCGTAAAAATAATTTTTTCAAAAA
1 AATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA-ATTTTCAAAAA
8640144 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
1 AATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
* * *
8640202 AATTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAATTTTCAAAAA
1 AA-TATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
* *
8640260 AATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTAAAAA
1 AATA-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
8640319 AATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1 AAT--ATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC
8640358 CTGCACAAGA
Statistics
Matches: 510, Mismatches: 39, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
57 2 0.00
58 118 0.23
59 290 0.57
60 94 0.18
61 6 0.01
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (57 bp):
AATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
Found at i:8641269 original size:3 final size:3
Alignment explanation
Indices: 8641261--8641362 Score: 125
Period size: 3 Copynumber: 34.3 Consensus size: 3
8641251 ACATTATGAC
* * *
8641261 AAT AAT AAT -AT TAT ACT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * **
8641308 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AGT AAT GGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
8641356 AAC AAT A
1 AAT AAT A
8641363 TATATAAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
2 2 0.02
3 82 0.98
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8643851 original size:7 final size:7
Alignment explanation
Indices: 8643839--8643899 Score: 61
Period size: 7 Copynumber: 8.6 Consensus size: 7
8643829 AATTAAATTA
8643839 AAAAAAT
1 AAAAAAT
8643846 AAAAAAT
1 AAAAAAT
*
8643853 AAAATAAA
1 AAAA-AAT
*
8643861 ACAAAAAC
1 A-AAAAAT
8643869 AAAAAAT
1 AAAAAAT
**
8643876 -AAAAGC
1 AAAAAAT
8643882 AAAAAAT
1 AAAAAAT
8643889 AAAAAAT
1 AAAAAAT
8643896 AAAA
1 AAAA
8643900 CTTGTGATCG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
6 4 0.09
7 31 0.70
8 6 0.14
9 3 0.07
ACGTcount: A:0.84, C:0.05, G:0.02, T:0.10
Consensus pattern (7 bp):
AAAAAAT
Found at i:8643852 original size:16 final size:17
Alignment explanation
Indices: 8643841--8643892 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
8643831 TTAAATTAAA
*
8643841 AAAATAAAAAATAAAAT
1 AAAACAAAAAATAAAAT
*
8643858 AAAACAAAAACAAAAAAT
1 AAAACAAAAA-ATAAAAT
8643876 AAAAGCAAAAAATAAAA
1 AAAA-CAAAAAATAAAA
8643893 AATAAAACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.30
18 15 0.50
19 6 0.20
ACGTcount: A:0.83, C:0.06, G:0.02, T:0.10
Consensus pattern (17 bp):
AAAACAAAAAATAAAAT
Found at i:8643855 original size:20 final size:20
Alignment explanation
Indices: 8643832--8643898 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
8643822 CAATCACAAT
*
8643832 TAAATTAAAAAAATAAAAAA
1 TAAATAAAAAAAATAAAAAA
*
8643852 TAAAATAAAACAAAAACAAAAAA
1 T-AAAT-AAA-AAAAATAAAAAA
*
8643875 TAAA-AGCAAAAAATAAAAAA
1 TAAATA-AAAAAAATAAAAAA
8643895 TAAA
1 TAAA
8643899 ACTTGTGATC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 17 0.44
21 5 0.13
22 5 0.13
23 12 0.31
ACGTcount: A:0.81, C:0.04, G:0.01, T:0.13
Consensus pattern (20 bp):
TAAATAAAAAAAATAAAAAA
Found at i:8644783 original size:12 final size:12
Alignment explanation
Indices: 8644758--8644815 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
8644748 CAAAAATTTG
8644758 AAATAAATAAATA
1 AAATAAA-AAATA
8644771 AAATAAAAAATA
1 AAATAAAAAATA
*
8644783 ATAAT-AAAATTA
1 A-AATAAAAAATA
* *
8644795 AAATAGAAACTA
1 AAATAAAAAATA
8644807 AAACTAAAA
1 AAA-TAAAA
8644816 GTTAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 3 0.08
12 21 0.55
13 14 0.37
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.21
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:8644814 original size:24 final size:25
Alignment explanation
Indices: 8644769--8644828 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
8644759 AATAAATAAA
8644769 TAAAATAAAAAATAATAATAAAA-T
1 TAAAATAAAAAATAATAATAAAAGT
* *
8644793 TAAAATAGAAACTAA-AACTAAAAGT
1 TAAAATAAAAAATAATAA-TAAAAGT
8644818 TAAAAATAAAA
1 T-AAAATAAAA
8644829 TAGAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.07
24 18 0.60
25 2 0.07
26 8 0.27
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (25 bp):
TAAAATAAAAAATAATAATAAAAGT
Found at i:8644827 original size:13 final size:12
Alignment explanation
Indices: 8644770--8644852 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 12
8644760 ATAAATAAAT
*
8644770 AAAATAAAAAATA
1 AAAAT-AAAATTA
*
8644783 ATAATAAAATT-
1 AAAATAAAATTA
*
8644794 AAAATAGAAACTA
1 AAAATA-AAATTA
*
8644807 AAACTAAAAGTTA
1 AAAATAAAA-TTA
8644820 AAAATAAAA-TA
1 AAAATAAAATTA
8644831 GAAAA-AATAATTA
1 -AAAATAA-AATTA
*
8644844 ATAATAAAA
1 AAAATAAAA
8644853 ATGGCATTGA
Statistics
Matches: 55, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
11 9 0.16
12 23 0.42
13 23 0.42
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (12 bp):
AAAATAAAATTA
Found at i:8646169 original size:19 final size:19
Alignment explanation
Indices: 8646129--8646182 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
8646119 AAATAAAAAG
*
8646129 AAAAGAGAAATGAAAAGGA
1 AAAAGAGAAAAGAAAAGGA
*
8646148 AAAAGAGAAAAGCAAAA-TA
1 AAAAGAGAAAAG-AAAAGGA
8646167 AAAAGA-AAAAGAAAAG
1 AAAAGAGAAAAGAAAAG
8646183 AAGGCAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 4 0.13
18 5 0.16
19 18 0.58
20 4 0.13
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (19 bp):
AAAAGAGAAAAGAAAAGGA
Found at i:8646175 original size:11 final size:11
Alignment explanation
Indices: 8646118--8646184 Score: 55
Period size: 11 Copynumber: 5.6 Consensus size: 11
8646108 AATAGAAATT
*
8646118 AAAATAAAAAG
1 AAAAGAAAAAG
*
8646129 AAAAGAGAAATG
1 AAAAGA-AAAAG
8646141 AAAAGGAAAAAGAG
1 AAAA-G-AAAA-AG
8646155 AAAAGCAAAATA-
1 AAAAG-AAAA-AG
8646167 AAAAGAAAAAG
1 AAAAGAAAAAG
8646178 AAAAGAA
1 AAAAGAA
8646185 GGCAGAAGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
10 1 0.02
11 16 0.35
12 13 0.28
13 10 0.22
14 6 0.13
ACGTcount: A:0.76, C:0.01, G:0.18, T:0.04
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:8646176 original size:12 final size:12
Alignment explanation
Indices: 8646118--8646181 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
8646108 AATAGAAATT
*
8646118 AAAATAAAAAG-
1 AAAAGAAAAAGA
*
8646129 AAAAGAGAAATGA
1 AAAAGA-AAAAGA
*
8646142 AAAGGAAAAAGA
1 AAAAGAAAAAGA
* *
8646154 GAAAAGCAAAATA
1 -AAAAGAAAAAGA
8646167 AAAAGAAAAAGA
1 AAAAGAAAAAGA
8646179 AAA
1 AAA
8646182 GAAGGCAGAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
11 5 0.12
12 22 0.54
13 14 0.34
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.05
Consensus pattern (12 bp):
AAAAGAAAAAGA
Found at i:8646309 original size:2 final size:2
Alignment explanation
Indices: 8646302--8646336 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8646292 TAAATATAAA
* *
8646302 AG AG AG AG AG AG AT AA AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8646337 AAGAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (2 bp):
AG
Found at i:8646321 original size:16 final size:16
Alignment explanation
Indices: 8646300--8646330 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8646290 GTTAAATATA
8646300 AAAGAGAGAGAGAGAT
1 AAAGAGAGAGAGAGAT
8646316 AAAGAGAGAGAGAGA
1 AAAGAGAGAGAGAGA
8646331 GAGAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03
Consensus pattern (16 bp):
AAAGAGAGAGAGAGAT
Found at i:8646323 original size:10 final size:10
Alignment explanation
Indices: 8646302--8646340 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
8646292 TAAATATAAA
*
8646302 AGAGAGAGAG
1 AGAGAAAGAG
*
8646312 AGATAAAGAG
1 AGAGAAAGAG
*
8646322 AGAGAGAGAG
1 AGAGAAAGAG
8646332 AGAGAAAGA
1 AGAGAAAGA
8646341 ATAAATAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03
Consensus pattern (10 bp):
AGAGAAAGAG
Found at i:8646785 original size:14 final size:16
Alignment explanation
Indices: 8646758--8646789 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
8646748 TTACATATAT
8646758 AAAAAATTTGAAAAAG
1 AAAAAATTTGAAAAAG
8646774 AAAAAA-TT-AAAAAG
1 AAAAAATTTGAAAAAG
8646788 AA
1 AA
8646790 TGAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (16 bp):
AAAAAATTTGAAAAAG
Found at i:8648182 original size:14 final size:15
Alignment explanation
Indices: 8648145--8648183 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
8648135 TAATAAAACC
*
8648145 TTTTAA-TTTATAGA
1 TTTTAATTTTTTAGA
8648159 TTTTAATTTTTTA-A
1 TTTTAATTTTTTAGA
8648173 TTTTAATTTTT
1 TTTTAATTTTT
8648184 ATTTAATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTAATTTTTTAGA
Found at i:8651324 original size:12 final size:11
Alignment explanation
Indices: 8651301--8651338 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
8651291 ATAAATTTTT
*
8651301 TTTTAATCTTA
1 TTTTAATATTA
8651312 TTTATAATATTA
1 TTT-TAATATTA
8651324 TTTT-ATATTA
1 TTTTAATATTA
8651334 TTTTA
1 TTTTA
8651339 TCATAATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 10 0.42
11 4 0.17
12 10 0.42
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTAATATTA
Found at i:8651985 original size:2 final size:2
Alignment explanation
Indices: 8651978--8652023 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8651968 TAAGGTTGCC
8651978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8652020 AT AT
1 AT AT
8652024 CTCCAAGTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8653141 original size:23 final size:25
Alignment explanation
Indices: 8653110--8653155 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
8653100 TGTTGTGCTT
*
8653110 GAAGCAATA-ATCACAA-CAATACA
1 GAAGCAATAGATAACAATCAATACA
*
8653133 GAAGTAATAGATAACAATCAATA
1 GAAGCAATAGATAACAATCAATA
8653156 ATAAAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 6 0.32
25 5 0.26
ACGTcount: A:0.57, C:0.15, G:0.11, T:0.17
Consensus pattern (25 bp):
GAAGCAATAGATAACAATCAATACA
Found at i:8653320 original size:16 final size:17
Alignment explanation
Indices: 8653291--8653323 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8653281 CTCTAACTAA
*
8653291 AACTAGAGCTAAATAAT
1 AACTAGAGCAAAATAAT
8653308 AACTAGAG-AAAATAAT
1 AACTAGAGCAAAATAAT
8653324 TGGAGAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AACTAGAGCAAAATAAT
Found at i:8655200 original size:213 final size:213
Alignment explanation
Indices: 8654826--8655253 Score: 732
Period size: 213 Copynumber: 2.0 Consensus size: 213
8654816 CTTCTTGTAC
* *
8654826 CACTTCACGGAGCTTGTTTCAAGCCATACAAGCTTTTCTTCAATTTGTAAACTAAGTGCTTTTTC
1 CACTTCACGGAGCTTGTTTCAAGCCATACAAGCTTTTCTTCAATTTGTAAACTAAGTACTCTTTC
*
8654891 CCTTTCACTTCAAAACCTTCAGGCTGATTCATATAAATGTCTTTCTGTAAATCACCATACAAAAA
66 CCTTTCACTTCAAAACCTTCAGGCTGATTCATATAAATGTCTCTCTGTAAATCACCATACAAAAA
*
8654956 TACAGTTTTAACATCAAGTTGCTCAAGCTCAAGATTCAAACTAGCTGTTAATCCCAGTACCACTA
131 TACAGTTTTAACATCAAGTTGCTCAAGCTCAAGATTCAAACTAGCTGCTAATCCCAGTACCACTA
8655021 GAATAGAACTCATCATTA
196 GAATAGAACTCATCATTA
* * *
8655039 CACTTCGCGGAGCTTGTTTCAAGCCATACAAGCTTTTTTTCAATTTGTAAACTACGTACTCTTTC
1 CACTTCACGGAGCTTGTTTCAAGCCATACAAGCTTTTCTTCAATTTGTAAACTAAGTACTCTTTC
8655104 CCTTTCACTTCAAAACCTTCAGGCTGATTCATATAAATGTC-CTCATGTAAATCACCATACAAAA
66 CCTTTCACTTCAAAACCTTCAGGCTGATTCATATAAATGTCTCTC-TGTAAATCACCATACAAAA
* * *
8655168 TTGCAGTTTTAACATCAAGTTGCTCAAGCTCAAGATTCAAACTAGCTGCTAATCCTAGTACCACT
130 ATACAGTTTTAACATCAAGTTGCTCAAGCTCAAGATTCAAACTAGCTGCTAATCCCAGTACCACT
* *
8655233 CGAATAGAACTCATCTTTA
195 AGAATAGAACTCATCATTA
8655252 CA
1 CA
8655254 ACTAGAGCAA
Statistics
Matches: 202, Mismatches: 12, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
212 2 0.01
213 200 0.99
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (213 bp):
CACTTCACGGAGCTTGTTTCAAGCCATACAAGCTTTTCTTCAATTTGTAAACTAAGTACTCTTTC
CCTTTCACTTCAAAACCTTCAGGCTGATTCATATAAATGTCTCTCTGTAAATCACCATACAAAAA
TACAGTTTTAACATCAAGTTGCTCAAGCTCAAGATTCAAACTAGCTGCTAATCCCAGTACCACTA
GAATAGAACTCATCATTA
Found at i:8660328 original size:33 final size:34
Alignment explanation
Indices: 8660281--8660351 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
8660271 TTTTTCTATT
8660281 TTGCTTTGCTTCTTTATTTTCCCTA-AAAATCTTA
1 TTGCTTTGCTTCTTTATTTTCCC-AGAAAATCTTA
*
8660315 TTGC-TTGCTTCTTTATTTTGCCAGAAAATCTTA
1 TTGCTTTGCTTCTTTATTTTCCCAGAAAATCTTA
8660348 TTGC
1 TTGC
8660352 CCTAGCCTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
32 1 0.03
33 30 0.86
34 4 0.11
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (34 bp):
TTGCTTTGCTTCTTTATTTTCCCAGAAAATCTTA
Found at i:8661200 original size:21 final size:21
Alignment explanation
Indices: 8661174--8661214 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8661164 TCTCAAACTT
8661174 ATTCAAAAACCATCATATATC
1 ATTCAAAAACCATCATATATC
*
8661195 ATTCAAAAACTATCATATAT
1 ATTCAAAAACCATCATATAT
8661215 GAATGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCAAAAACCATCATATATC
Found at i:8663246 original size:4 final size:4
Alignment explanation
Indices: 8663237--8663262 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8663227 GAAGATAGTG
8663237 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
8663263 ATTATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8666870 original size:657 final size:656
Alignment explanation
Indices: 8665611--8666927 Score: 2016
Period size: 657 Copynumber: 2.0 Consensus size: 656
8665601 GTTACAAGTT
* * *
8665611 AATTAATAAGATAATTTTAAATTTATGATAGCTAGTATTGAAATAATAAAAATTGTGAGTGAATA
1 AATTAATAAGATAATTTTAAATTTATGAAAGCTAATATTGAAATAATAAAAATTATGAGTGAATA
*
8665676 ATGGTCTAAAAATGACAAGTTCATTGATATTGAAATATTTTATTCTACCATTAACATTTAGAGAT
66 ATGGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGAT
* * * *
8665741 CTCTTAATTTAGAATAATAAAACAAATTAAATTTATTGTATTTAATAATGGAAATAAAACAAATT
131 CACTTAATTTAGAACAATAAAACAAAATAAATTTATTATATTTAATAATGGAAATAAAACAAATT
* * **
8665806 AAATTTAATTAAATTAACGTACATTAATATCTAGATTTTAAAATTATAAAACGTTACAAATGAAA
196 AAATTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAATGAAA
* *
8665871 TCAATGAAATCCAAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCATCTTAATGAAAT
261 ACAATGAAATCCAAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCATCTTAATAAAAT
8665936 ATAAATCTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTTAATTATGGAGAAT
326 ATAAATCTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTTAATTATGGAGAAT
* * * * **
8666001 TAATTTGATATATTTGCTTTCTATAGTTACATATAAAATATATTAATTATTCAAATGGATACTAT
391 TAATTTGATATATTTGCTTTATATAGTTACACATAAAATACATCAATTACACAAATGGATACTAT
* * * *
8666066 ATTTAATCAAATATAAATGTATTAAATAATTAATTAGTGAATCAATTATTTTATAATTATAATTG
456 AATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTTATAATTATAATTG
* *
8666131 TAGCGTTTATTAAATTATTAATTATATATTGATTGATTTAATTTGTCAAATTAAGAAAATTTTAA
521 TAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAAATTTTAA
* * * * * * *
8666196 AATTTTAATATTTTTAATATGAATTGAATTGAGTGTGATTTAAAGTTAATAATTAAAGCATAAAT
586 AATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAAT
8666261 ATAGTC
651 ATAGTC
* *
8666267 AATTGATAAGATAATTTTAAA-TTATGAAAGTTAATATTGAAATAAT-AAAATTATGAGTGAATA
1 AATTAATAAGATAATTTTAAATTTATGAAAGCTAATATTGAAATAATAAAAATTATGAGTGAATA
* * * *
8666330 ATGGGTCTAACAATGGCAAGTTGATTGATATTAAAATATTTTATTCTATCATTAACATTTAGAGA
66 AT-GGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGA
* *
8666395 TCACTTAATTTAGAACAATAAAATAAAATAAATTTATTATATTTAATAAT-GACAATAAAACAGA
130 TCACTTAATTTAGAACAATAAAACAAAATAAATTTATTATATTTAATAATGGA-AATAAAACAAA
* * *
8666459 TTAAATTTTAATTAAATCAACGTGCATTGATATC-AAATAATAAAATTTTAAAACGTTACAAATG
194 TTAAA-TTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAATG
* * *
8666523 AAAACAAATGAAAT-CAACGTGCATTAATATTTTATCAAATGAAATTAAATGAAATCATATTTAA
258 AAAAC-AATGAAATCCAA-ATGCATTAATATTTTACCAAATGAAATTAAATGAAATCAT-CTTAA
*
8666587 TAAAATATAAATGTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTTAATTATG
320 TAAAATATAAATCTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTTAATTATG
* *
8666652 GAGAATTAATTTGATATATTTGCTTTATATATTTACACATGAAATACATCAATTACACAAATGGA
385 GAGAATTAATTTGATATATTTGCTTTATATAGTTACACATAAAATACATCAATTACACAAATGGA
* *
8666717 TACTATAATTAATCAAATATAAATGTATCAAATAATTACTTAGAGAATCAACTATTTTATAATTG
450 TACTATAATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTTATAATTA
* * * **
8666782 TAATTGTTGTATTTATTAATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAA-AATT
515 TAATTGTAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAAA
8666846 TTTTAAAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAA
580 TTTT-AAAATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAA
8666911 CATAAATATAGTC
644 CATAAATATAGTC
8666924 AATT
1 AATT
8666928 TAGTTTTTTG
Statistics
Matches: 597, Mismatches: 57, Indels: 13
0.90 0.09 0.02
Matches are distributed among these distances:
654 20 0.03
655 172 0.29
656 97 0.16
657 308 0.52
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (656 bp):
AATTAATAAGATAATTTTAAATTTATGAAAGCTAATATTGAAATAATAAAAATTATGAGTGAATA
ATGGTCTAAAAATGACAAGTTCATTGATATTAAAATATTTTATTCTACCATTAACATTTAGAGAT
CACTTAATTTAGAACAATAAAACAAAATAAATTTATTATATTTAATAATGGAAATAAAACAAATT
AAATTTAATTAAATCAACGTACATTAATATCTAAATAATAAAATTATAAAACGTTACAAATGAAA
ACAATGAAATCCAAATGCATTAATATTTTACCAAATGAAATTAAATGAAATCATCTTAATAAAAT
ATAAATCTATCAATCAAATATAAATTAATAAAATATTTTATTCCATTAATTTAATTATGGAGAAT
TAATTTGATATATTTGCTTTATATAGTTACACATAAAATACATCAATTACACAAATGGATACTAT
AATTAATCAAATATAAATGTATCAAATAATTAATTAGAGAATCAACTATTTTATAATTATAATTG
TAGCATTTATTAAATTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAAATTTTAA
AATTTTAATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAAT
ATAGTC
Found at i:8667066 original size:270 final size:273
Alignment explanation
Indices: 8666666--8667214 Score: 847
Period size: 270 Copynumber: 2.0 Consensus size: 273
8666656 ATTAATTTGA
* *
8666666 TATATTTGCTTTATATATTTACACATGAAATACATCAATTACACAAATGGATACTATAATTAATC
1 TATATTTGCTTTATATATTTACACATGAAAGACATCAATTA-AC--ATAGATACTATAATTAATC
* *
8666731 AAATATAAATGTATCAAATAATTACTTAGAGAATCAACTATTTTATAATTGTAATTGTTGTATTT
63 AAATATAAATGTATCAAATAATTACTTAAAGAATCAACTATTTTATAATTGTAATTGTAGTATTT
*
8666796 ATTAATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAA-AATTTTTTAAAAATTTTA
128 ATTAATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAATTTTT-AAAATTTTA
* *
8666860 ATACTTTTAATATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAATAT-AGTC
192 ATACTTTTAACATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAATATAAATC
*
8666924 AATTTAGTTTTTTGAAT
257 AATGTAGTTTTTTGAAT
* * * * *
8666941 TATATTTGCTTTATATATTTACGCATGAAAGATATCAATT-AC-TAGATACTGTATTTAATTAAA
1 TATATTTGCTTTATATATTTACACATGAAAGACATCAATTAACATAGATACTATAATTAATCAAA
*
8667004 TATAAATGTATCAAATAATTTA-TTAAAGAATTAACTATTTTATAATTGTAATTGTAGTATTTAT
66 TATAAATGTATCAAATAA-TTACTTAAAGAATCAACTATTTTATAATTGTAATTGTAGTATTTAT
* *
8667068 TAATTTATTAGTTATATATTGATTGATTTAATTTGTCAAATTAAGAAATTTTTAAAATTTTAATA
130 TAATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAATTTTTAAAATTTTAATA
* * *
8667133 CTTTTAACATGAATTGAATTGAGAGTGATTTAAAGTTAATAATAAAAACATAAATATAAATCAAT
195 CTTTTAACATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAATATAAATCAAT
8667198 GTAGTTTTTTGAAT
260 GTAGTTTTTTGAAT
8667212 TAT
1 TAT
8667215 TTTTAAATTA
Statistics
Matches: 252, Mismatches: 19, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
270 181 0.72
271 32 0.13
273 2 0.01
275 37 0.15
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.44
Consensus pattern (273 bp):
TATATTTGCTTTATATATTTACACATGAAAGACATCAATTAACATAGATACTATAATTAATCAAA
TATAAATGTATCAAATAATTACTTAAAGAATCAACTATTTTATAATTGTAATTGTAGTATTTATT
AATTTATTAATTATATATTGATTGATTTAATTTATCAAATTAAGAAATTTTTAAAATTTTAATAC
TTTTAACATGAATTGAATTGAGAGTGATTTAAAATCAACAATAAAAACATAAATATAAATCAATG
TAGTTTTTTGAAT
Found at i:8667704 original size:14 final size:15
Alignment explanation
Indices: 8667685--8667724 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
8667675 TGGATTAAGG
8667685 GGAAAGGAAAA-AAA
1 GGAAAGGAAAATAAA
8667699 GGAAAGGAAAATAAA
1 GGAAAGGAAAATAAA
*
8667714 GGAAAGTAAAA
1 GGAAAGGAAAA
8667725 GAAATAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.05
Consensus pattern (15 bp):
GGAAAGGAAAATAAA
Found at i:8670053 original size:23 final size:22
Alignment explanation
Indices: 8670027--8670072 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
8670017 CCGAAAACCG
8670027 AAAAAACAGAAACACAAAAACAA
1 AAAAAACAGAAACA-AAAAACAA
*
8670050 AAAAAACAGAAACAAAAACCAA
1 AAAAAACAGAAACAAAAAACAA
8670072 A
1 A
8670073 GACAAGTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.78, C:0.17, G:0.04, T:0.00
Consensus pattern (22 bp):
AAAAAACAGAAACAAAAAACAA
Found at i:8676833 original size:14 final size:15
Alignment explanation
Indices: 8676816--8676844 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8676806 TGAAAAGATG
8676816 CAAAAAAAA-AAAGA
1 CAAAAAAAAGAAAGA
8676830 CAAAAAAAAGAAAGA
1 CAAAAAAAAGAAAGA
8676845 AATGAATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAGAAAGA
Found at i:8677676 original size:33 final size:33
Alignment explanation
Indices: 8677634--8678317 Score: 704
Period size: 33 Copynumber: 20.8 Consensus size: 33
8677624 AAAAAAAAAA
*
8677634 AAACTTTAAGCCTAGTTTATCTGGCC-TCTAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATC-AATG
* *
8677667 AAACTTTAAGCCCAGTTTATCTAGCCATCAACG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* *
8677700 AAGCTTTAAGCCCAGTTTATCTGACCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
** * *
8677733 ATGCTTTAAGCCTAGTTTATCTAGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * * *
8677766 ATGA-TTTAAGCCCA-ATTATCTAGCTATCAATG
1 A-AACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
8677798 AAAATTGAAGCCCAGTTTATCTAGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * * *
8677831 AAAATTTAAGCCTAGTTTATTTGGCCATCAATA
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
8677864 AAAATTTAAGCCTAGTTTATTTGGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* *
8677897 AAAATTTAAGCCCAGTTTATTTGGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
** *
8677930 AAGGTTTAAGCCCAGTTTATCTAGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* *
8677963 AAGA-TTTAAGCCCAGTTTATTTGGCAATCAATG
1 AA-ACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
8677996 AAATTTTAAGCCAAGTTTGTCTGGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
8678029 ACA-TTTAAGCCCAGTTTGTCTGGCCGTCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
** * * *
8678061 AAGTTTTAAACGCAGTTTATCTGACCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
* * *
8678094 AAGCTTTAAGCCCAATTTATCTGGCCCTCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
8678127 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
** * *
8678160 AGGCTTTAAACCTAGTTTATCTGGCCATCAAT-
1 AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
*
8678192 AAAGATTTAAGCCCAGTTTATCTGGCC-TCAAATG
1 AAA-CTTTAAGCCCAGTTTATCTGGCCATC-AATG
* *
8678226 AAGA-TTTAAGCCCGGTTTATCTGGCCCTCAAAT-
1 AA-ACTTTAAGCCCAGTTTATCTGGCCATC-AATG
** * * *
8678259 AAGGTTTTAAGCCCAATTTAGCTGGCCTTCAAT-
1 AA-ACTTTAAGCCCAGTTTATCTGGCCATCAATG
* *
8678292 AAAATTTAAGCCCAGTTTATTTGGCC
1 AAACTTTAAGCCCAGTTTATCTGGCC
8678318 CCAAAGAAGT
Statistics
Matches: 560, Mismatches: 78, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
31 1 0.00
32 77 0.14
33 450 0.80
34 31 0.06
35 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (33 bp):
AAACTTTAAGCCCAGTTTATCTGGCCATCAATG
Found at i:8679175 original size:19 final size:19
Alignment explanation
Indices: 8679135--8679182 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
8679125 GTAAAAAATT
* *
8679135 TTTTTTTTTTAATTTTTAA
1 TTTTTTTTATAATTATTAA
8679154 TTTTTTTTATATATTATT-A
1 TTTTTTTTATA-ATTATTAA
*
8679173 TTTTTGTTAT
1 TTTTTTTTAT
8679183 TTTAAGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTTTATAATTATTAA
Found at i:8683092 original size:17 final size:17
Alignment explanation
Indices: 8683072--8683104 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8683062 GTATTTAAGA
8683072 TCCCATTTTATTATTAT
1 TCCCATTTTATTATTAT
*
8683089 TCCCTTTTTATTATTA
1 TCCCATTTTATTATTA
8683105 AACAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (17 bp):
TCCCATTTTATTATTAT
Found at i:8683369 original size:15 final size:15
Alignment explanation
Indices: 8683349--8683381 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8683339 GTTTTCAGAA
8683349 TTTTGAATTTTAAGG
1 TTTTGAATTTTAAGG
*
8683364 TTTTGAATTTTACGG
1 TTTTGAATTTTAAGG
8683379 TTT
1 TTT
8683382 AGGATTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.03, G:0.18, T:0.58
Consensus pattern (15 bp):
TTTTGAATTTTAAGG
Found at i:8683969 original size:18 final size:19
Alignment explanation
Indices: 8683922--8683971 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
8683912 ATCATGCATA
*
8683922 AATATATAAAAAAA-ACTC
1 AATATATAAAAAAATAATC
* *
8683940 AAAATAT-CAAAAATAAT-
1 AATATATAAAAAAATAATC
8683957 AATATATAAAAAAAT
1 AATATATAAAAAAAT
8683972 TAAAAAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (19 bp):
AATATATAAAAAAATAATC
Found at i:8684319 original size:21 final size:21
Alignment explanation
Indices: 8684293--8684334 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8684283 CGCATGCCTG
*
8684293 TTTAATAGTAATAGTAATAAT
1 TTTAATAATAATAGTAATAAT
*
8684314 TTTAATAATAATATTAATAAT
1 TTTAATAATAATAGTAATAAT
8684335 AATATCGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
TTTAATAATAATAGTAATAAT
Found at i:8684322 original size:12 final size:12
Alignment explanation
Indices: 8684307--8684339 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8684297 ATAGTAATAG
*
8684307 TAATAATTTTAA
1 TAATAATATTAA
8684319 TAATAATATTAA
1 TAATAATATTAA
8684331 TAATAATAT
1 TAATAATAT
8684340 CGATTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:8686020 original size:22 final size:22
Alignment explanation
Indices: 8685994--8686040 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8685984 CCTAAAATTG
* *
8685994 AAACCCCAATATCCAAAATCTT
1 AAACCCCAAAATCCAAAACCTT
*
8686016 AAACCCTAAAATCCAAAACCTT
1 AAACCCCAAAATCCAAAACCTT
8686038 AAA
1 AAA
8686041 ATTCAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (22 bp):
AAACCCCAAAATCCAAAACCTT
Found at i:8691029 original size:3 final size:3
Alignment explanation
Indices: 8691021--8691108 Score: 142
Period size: 3 Copynumber: 29.3 Consensus size: 3
8691011 AAAGGTTTTG
*
8691021 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
8691069 ATT AGTT -TT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATT A
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8691109 ATGCCAAAAC
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.03
3 75 0.95
4 2 0.03
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8692781 original size:28 final size:28
Alignment explanation
Indices: 8692732--8692786 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
8692722 ATGTCTACCA
*
8692732 AATACTTAAATTAATTGATTGATATTTT
1 AATACTTAAATTAATTGATTGAAATTTT
* *
8692760 AATACTTACATATAA-TGCTTGAAATTT
1 AATACTTAAAT-TAATTGATTGAAATTT
8692787 AAAATTTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (28 bp):
AATACTTAAATTAATTGATTGAAATTTT
Found at i:8694744 original size:2 final size:2
Alignment explanation
Indices: 8694737--8694770 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8694727 CAGAATATCT
8694737 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8694771 AAGTCTCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8695437 original size:2 final size:2
Alignment explanation
Indices: 8695430--8695459 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8695420 AGTAACTTGG
8695430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8695460 GGTAACCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8696151 original size:22 final size:22
Alignment explanation
Indices: 8696116--8696159 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8696106 GATTATGATA
*
8696116 AAATAATATAAAA-TAATATTAT
1 AAATAAGATAAAATTAA-ATTAT
*
8696138 AAATAAGATTAAATTAAATTAT
1 AAATAAGATAAAATTAAATTAT
8696160 TTTATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
AAATAAGATAAAATTAAATTAT
Found at i:8696255 original size:16 final size:18
Alignment explanation
Indices: 8696234--8696270 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8696224 ATTATTCTTT
8696234 TTTAAAGT-TT-ATATAA
1 TTTAAAGTATTGATATAA
*
8696250 TTTAAATTATTGATATAA
1 TTTAAAGTATTGATATAA
8696268 TTT
1 TTT
8696271 TTAAAAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
TTTAAAGTATTGATATAA
Found at i:8699857 original size:6 final size:6
Alignment explanation
Indices: 8699833--8699893 Score: 52
Period size: 6 Copynumber: 9.5 Consensus size: 6
8699823 TTATTTAAAG
* *
8699833 AAAAT- AAAATAA TAAAATA AAAATA AAAATA AAGAAAA GTAAAATA AAGATA
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AA-AATA --AAAATA AAAATA
8699885 AAAATA AAA
1 AAAATA AAA
8699894 GAATATTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
5 5 0.11
6 27 0.59
7 4 0.09
8 8 0.17
9 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:8699879 original size:27 final size:25
Alignment explanation
Indices: 8699833--8699898 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 25
8699823 TTATTTAAAG
*
8699833 AAAATAAAATAATAAAATAAAAATA
1 AAAATAAAAAAATAAAATAAAAATA
*
8699858 AAAATAAAGAAAAGTAAAATAAAGATA
1 AAAATAAA-AAAA-TAAAATAAAAATA
*
8699885 AAAATAAAAGAATA
1 AAAATAAAAAAATA
8699899 TTAAACAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 10 0.28
26 6 0.17
27 20 0.56
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (25 bp):
AAAATAAAAAAATAAAATAAAAATA
Found at i:8699923 original size:3 final size:3
Alignment explanation
Indices: 8699915--8699947 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8699905 AATTCTAATC
*
8699915 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8699948 ATAAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:8700109 original size:16 final size:17
Alignment explanation
Indices: 8700066--8700109 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
8700056 TTTTTTAGCT
8700066 TCTGTTTCTTCTCTGTG
1 TCTGTTTCTTCTCTGTG
*
8700083 TCTGTGT-TTCTCTGTG
1 TCTGTTTCTTCTCTGTG
*
8700099 TGT-TTTCTTCT
1 TCTGTTTCTTCT
8700110 GTTCTTCCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 2 0.09
16 15 0.65
17 6 0.26
ACGTcount: A:0.00, C:0.20, G:0.18, T:0.61
Consensus pattern (17 bp):
TCTGTTTCTTCTCTGTG
Found at i:8700332 original size:16 final size:17
Alignment explanation
Indices: 8700302--8700345 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
8700292 TAAATATATT
8700302 AATAGATAACA-AAAA-A
1 AATAGATAA-ATAAAAGA
*
8700318 ATTAGATAAATAAAAGA
1 AATAGATAAATAAAAGA
8700335 AATAGATAAAT
1 AATAGATAAAT
8700346 GATAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 1 0.04
16 12 0.50
17 11 0.46
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (17 bp):
AATAGATAAATAAAAGA
Found at i:8700340 original size:17 final size:16
Alignment explanation
Indices: 8700302--8700413 Score: 58
Period size: 17 Copynumber: 7.0 Consensus size: 16
8700292 TAAATATATT
8700302 AATAGATAACA-AAAAA
1 AATAGATAA-ATAAAAA
*
8700318 ATTAGATAAATAAAAGA
1 AATAGATAAATAAAA-A
* *
8700335 AATAGATAAAT--GAT
1 AATAGATAAATAAAAA
8700349 AATA-ATAAA-AAATAA
1 AATAGATAAATAAA-AA
*
8700364 AAGCAGATAAATAATAAA
1 AA-TAGATAAATAA-AAA
* *
8700382 AATATTAATAGATAAAAA
1 AATA--GATAAATAAAAA
8700400 AATA-A-AAATAAAAA
1 AATAGATAAATAAAAA
8700414 TAAATATATA
Statistics
Matches: 74, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
13 5 0.07
14 12 0.16
15 6 0.08
16 13 0.18
17 17 0.23
18 13 0.18
19 8 0.11
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.21
Consensus pattern (16 bp):
AATAGATAAATAAAAA
Found at i:8700359 original size:41 final size:41
Alignment explanation
Indices: 8700282--8700359 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
8700272 ATTAATCAAA
* * *
8700282 ATAAAAAAAATAAATATATTAATAGATAACAAAAAAATTAG
1 ATAAAAAAAAGAAATAGATAAATAGATAACAAAAAAATTAG
* *
8700323 ATAAATAAAAGAAATAGATAAAT-GATAATAATAAAAA
1 ATAAAAAAAAGAAATAGATAAATAGATAACAA-AAAAA
8700360 ATAAAAGCAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 7 0.23
41 24 0.77
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.23
Consensus pattern (41 bp):
ATAAAAAAAAGAAATAGATAAATAGATAACAAAAAAATTAG
Found at i:8700384 original size:23 final size:23
Alignment explanation
Indices: 8700349--8700412 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
8700339 GATAAATGAT
8700349 AATAATAAAAAATAAAAGCAGAT-A
1 AATAAT-AAAAATAAAA-CAGATAA
* *
8700373 AATAATAAAAATATTAATAGATAA
1 AATAATAAAAATA-AAACAGATAA
*
8700397 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
8700413 ATAAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
23 13 0.38
24 21 0.62
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (23 bp):
AATAATAAAAATAAAACAGATAA
Found at i:8700412 original size:5 final size:6
Alignment explanation
Indices: 8700370--8700443 Score: 51
Period size: 6 Copynumber: 12.0 Consensus size: 6
8700360 ATAAAAGCAG
** * *
8700370 ATAAATA ATAAAA ATATTA ATAGATA A-AAAA ATAAAA ATAAAA ATAAAT
1 ATAAA-A ATAAAA ATAAAA ATA-AAA ATAAAA ATAAAA ATAAAA ATAAAA
* * *
8700419 ATATATA ATGAAA CTAAAA ATAAAA
1 ATA-AAA ATAAAA ATAAAA ATAAAA
8700444 GTCCATTGGG
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
5 3 0.06
6 38 0.73
7 11 0.21
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:8700754 original size:45 final size:42
Alignment explanation
Indices: 8700675--8700966 Score: 222
Period size: 42 Copynumber: 6.9 Consensus size: 42
8700665 AAATTTTGAT
* * *
8700675 CAAAGCTCCTCTAAGTAGAGGCTTAATGACTTTGAGAAACATAAA
1 CAAAGCTCCTCTAA-TAGAGGCTCAACGACTTTGA-AAAAAT-AA
* *
8700720 CAAAGCTCCTCTAATAAAAGGCTCAACGATTTTGAAAAAATAA
1 CAAAGCTCCTCTAAT-AGAGGCTCAACGACTTTGAAAAAATAA
** * *
8700763 -ATGGCTCCTCTAATCAGAGGCTCAACAACTTTG-AAAAGTAA
1 CAAAGCTCCTCTAAT-AGAGGCTCAACGACTTTGAAAAAATAA
** * *
8700804 -ATGGCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAA
1 CAAAGCTCCTCTAAT-AGAGGCTCAACGACTTTGAAAAAATAA
** ** *
8700846 -ATGGCTCCTCTAATCAGAGGCTCAATAACTTTG-AAAAGTAA
1 CAAAGCTCCTCTAAT-AGAGGCTCAACGACTTTGAAAAAATAA
** * *
8700887 -ATGGCTCCTCTAATCAGAAGCTCAACCACTTTG--AAAATAA
1 CAAAGCTCCTCTAAT-AGAGGCTCAACGACTTTGAAAAAATAA
*
8700927 CTAAAGCTCTTCTAATCAGAGGCTCAACGACTTTTGAAAA
1 C-AAAGCTCCTCTAAT-AGAGGCTCAACGAC-TTTGAAAA
8700967 GTAAATGGCT
Statistics
Matches: 214, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
40 6 0.03
41 75 0.35
42 90 0.42
43 6 0.03
44 6 0.03
45 31 0.14
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (42 bp):
CAAAGCTCCTCTAATAGAGGCTCAACGACTTTGAAAAAATAA
Found at i:8700784 original size:42 final size:41
Alignment explanation
Indices: 8700724--8701030 Score: 361
Period size: 42 Copynumber: 7.4 Consensus size: 41
8700714 CATAAACAAA
* * * *
8700724 GCTCCTCTAATAAAAGGCTCAACGATTTTGAAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTG-AAAAGTAAATG
*
8700766 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAGTAAATG
* *
8700807 GCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTT-GAAAAGTAAATG
**
8700849 GCTCCTCTAATCAGAGGCTCAATAACTTTGAAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAGTAAATG
* * **
8700890 GCTCCTCTAATCAGAAGCTCAACCACTTTGAAAA-TAACTAAA
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAGTAA--ATG
*
8700932 GCTCTTCTAATCAGAGGCTCAACGACTTTTGAAAAGTAAATG
1 GCTCCTCTAATCAGAGGCTCAACGAC-TTTGAAAAGTAAATG
* * * *
8700974 GCT-CTCCTAATCAGAGGCTTAAC--TTTTGGAAAGTAAATT
1 GCTCCT-CTAATCAGAGGCTCAACGACTTTGAAAAGTAAATG
*
8701013 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAATCAGAGGC
8701031 AACGAAACTT
Statistics
Matches: 232, Mismatches: 26, Indels: 17
0.84 0.09 0.06
Matches are distributed among these distances:
39 27 0.12
40 5 0.02
41 80 0.34
42 109 0.47
43 8 0.03
44 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (41 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAGTAAATG
Found at i:8700842 original size:83 final size:83
Alignment explanation
Indices: 8700724--8701030 Score: 392
Period size: 83 Copynumber: 3.7 Consensus size: 83
8700714 CATAAACAAA
* * *
8700724 GCTCCTCTAATAAAAGGCTCAACGATTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAC
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAC
8700789 AACTTTGAAAAGTAAATG
66 AACTTTGAAAAGTAAATG
* * *
8700807 GCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAT
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAC
8700872 AACTTTGAAAAGTAAATG
66 AACTTTGAAAAGTAAATG
* * *
8700890 GCTCCTCTAATCAGAAGCTCAACCACTTTGAAAATAACTAAA--GCTCTTCTAATCAGAGGCTCA
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAA-AA-TAAATGGCTCCTCTAATCAGAGGCTCA
*
8700953 ACGACTTTTGAAAAGTAAATG
64 ACAAC-TTTGAAAAGTAAATG
* * * * * *
8700974 GCT-CTCCTAATCAGAGGCTTAAC--TTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGC
1 GCTCCT-CTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGC
8701031 AACGAAACTT
Statistics
Matches: 198, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
79 4 0.02
80 1 0.01
81 18 0.09
82 4 0.02
83 132 0.67
84 35 0.18
85 4 0.02
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (83 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAAC
AACTTTGAAAAGTAAATG
Found at i:8700947 original size:125 final size:124
Alignment explanation
Indices: 8700676--8701027 Score: 392
Period size: 125 Copynumber: 2.8 Consensus size: 124
8700666 AATTTTGATC
* * ** * *
8700676 AAAGCTCCTCTAAGT-AGAGGCTTAATGACTTTGAGAAACATAAACAAAGCTCCTCTAATAAAAG
1 AAAGCTCCTCTAA-TCAGAGGCTCAATGACTTTG-GAAAAAT-AA-ATGGCTCCTCTAATCAGAG
** * * *
8700740 GCTCAACGATTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAGTAA
62 GCTCAATAACTTTG-AAAAGTAAATGGCTCCTCTAATCAGAAGCTCAACAACTTTGAAAAGTAA
**
8700804 ATGGCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTC
1 AAAGCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTC
*
8700869 AATAACTTTGAAAAGTAAATGGCTCCTCTAATCAGAAGCTCAACCACTTTGAAAA-TAA
66 AATAACTTTGAAAAGTAAATGGCTCCTCTAATCAGAAGCTCAACAACTTTGAAAAGTAA
* * * *
8700927 CTAAAGCTCTTCTAATCAGAGGCTCAACGACTTTTGAAAAGTAAATGGCT-CTCCTAATCAGAGG
1 --AAAGCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCT-CTAATCAGAGG
* * *
8700991 CT---TAACTTTTGGAAAGTAAATTGCTCCTCTAAACAGA
63 CTCAATAAC-TTTGAAAAGTAAATGGCTCCTCTAATCAGA
8701028 GGCAACGAAA
Statistics
Matches: 196, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
122 4 0.02
123 30 0.15
124 44 0.22
125 81 0.41
126 2 0.01
127 7 0.04
128 28 0.14
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (124 bp):
AAAGCTCCTCTAATCAGAGGCTCAATGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTC
AATAACTTTGAAAAGTAAATGGCTCCTCTAATCAGAAGCTCAACAACTTTGAAAAGTAA
Found at i:8701386 original size:44 final size:44
Alignment explanation
Indices: 8701325--8701429 Score: 126
Period size: 43 Copynumber: 2.4 Consensus size: 44
8701315 TTCAAGGCTT
* * *
8701325 TTCAAAGGTTCTCATTTGGCAAACTT-GAAATTCATATCCAAAAA
1 TTCAAAGCTTTTCATTTGG-AAACTTGGAAATTCACATCCAAAAA
**
8701369 -TCTAAAGCTTTTCATTT-GAATTTTGGAAATTCACATCCAAAAA
1 TTC-AAAGCTTTTCATTTGGAAACTTGGAAATTCACATCCAAAAA
8701412 TTCAAAGCTTTTCATTTG
1 TTCAAAGCTTTTCATTTG
8701430 AGTTCAAAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 4 0.08
43 34 0.65
44 14 0.27
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.37
Consensus pattern (44 bp):
TTCAAAGCTTTTCATTTGGAAACTTGGAAATTCACATCCAAAAA
Found at i:8702778 original size:12 final size:13
Alignment explanation
Indices: 8702761--8702817 Score: 52
Period size: 12 Copynumber: 4.7 Consensus size: 13
8702751 TTTTTTTTCA
8702761 TTTTCTCAT-TTT
1 TTTTCTCATATTT
* *
8702773 TTTTCT-TTCTTT
1 TTTTCTCATATTT
8702785 TTTTCTC-TATTT
1 TTTTCTCATATTT
8702797 TTTT-TCAT-TTT
1 TTTTCTCATATTT
8702808 TTTTCATCAT
1 TTTTC-TCAT
8702818 CTTCTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 10 0.26
12 24 0.63
13 4 0.11
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTCTCATATTT
Found at i:8702807 original size:22 final size:22
Alignment explanation
Indices: 8702751--8702810 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
8702741 ATTTGAATCT
* *
8702751 TTTTTTTTCA-TTTTCTCATTT
1 TTTTTTTTCATTTTTTTCATTA
8702772 TTTTTCTTTC-TTTTTTTC-TCTA
1 TTTTT-TTTCATTTTTTTCAT-TA
8702794 TTTTTTTTCATTTTTTT
1 TTTTTTTTCATTTTTTT
8702811 TCATCATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
21 10 0.30
22 23 0.70
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTTTCATTTTTTTCATTA
Found at i:8706897 original size:58 final size:56
Alignment explanation
Indices: 8706808--8707044 Score: 271
Period size: 58 Copynumber: 4.1 Consensus size: 56
8706798 AAAACCCTTT
** *
8706808 TTTTTTGAAAATTTATTTTTAAGAAAATTGATACTTTTAACTTTTCCCTAAAAATA
1 TTTTTTGAAAATTTATTTCGAAGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
*
8706864 TTTTTTGAAAACTTTAATTTCGAAGAAAATTGATACTTTCAACTTTT-CCTCAAAAAAA
1 TTTTTTGAAAA-TTT-ATTTCGAAGAAAATTGATACTTTCAACTTTTCCCT-AAAAATA
** *
8706922 CCTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTTAACTTTTCCCTAAAAATA
1 --TTTTTTGAAAATTTATTTCGAA-GAAAATTGATACTTTCAACTTTTCCCTAAAAATA
** * **
8706981 TTTTTTGGAATCTTTAATTTCG-AGAAAAATTGGTACTTTCAACTTTTCTTTAAAAATA
1 TTTTTT-GAAAATTT-ATTTCGAAG-AAAATTGATACTTTCAACTTTTCCCTAAAAATA
8707039 TTTTTT
1 TTTTTT
8707045 TTTGAATTTT
Statistics
Matches: 155, Mismatches: 16, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
56 11 0.07
57 13 0.08
58 82 0.53
59 35 0.23
60 14 0.09
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.46
Consensus pattern (56 bp):
TTTTTTGAAAATTTATTTCGAAGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
Found at i:8707036 original size:117 final size:118
Alignment explanation
Indices: 8706767--8707028 Score: 431
Period size: 117 Copynumber: 2.2 Consensus size: 118
8706757 TTTTGTATAG
*
8706767 GAAAAATTGATACTTTCAACTTCTCCTCAAAAAAACCCTTTTTTTTTGAAAATTTATTTTTAAGA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCC--TTTTTTTGAAAATTTATTTTTAAGA
8706832 AAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGA
64 AAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGA
8706887 -AGAAAATTGATACTTTCAACTTTTCCTCAAAAAAA-CC-TTTTTTGAAAATTTATTTTTAAGGA
1 GA-AAAATTGATACTTTCAACTTTTCCTCAAAAAAACCCTTTTTTTGAAAATTTATTTTTAA-GA
* *
8706949 AAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGGAATCTTTAATTTCGA
64 AAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGA
*
8707004 GAAAAATTGGTACTTTCAACTTTTC
1 GAAAAATTGATACTTTCAACTTTTC
8707029 TTTAAAAATA
Statistics
Matches: 135, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
116 22 0.16
117 77 0.57
118 1 0.01
119 3 0.02
120 32 0.24
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (118 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCCTTTTTTTGAAAATTTATTTTTAAGAAA
ATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGA
Found at i:8707045 original size:117 final size:116
Alignment explanation
Indices: 8706769--8707067 Score: 415
Period size: 117 Copynumber: 2.5 Consensus size: 116
8706759 TTGTATAGGA
*
8706769 AAAATTGATACTTTCAACTTCTCCTCAAAAAAACCCTTTTTTTTTGAAAATTTATTTTTAAGAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAAA----TTTTTTTTGAAAATTTATTTTTAAGAAA
8706834 ATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAG
62 ATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAG
**
8706889 AAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTTGAAAATTTATTTTTAA-GAAAATT
* *
8706954 GATACTTTTAACTTTTCCCTAAAAATATTTTTTGGAATCTTTAATTTCG-AG
65 GATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAG
* * * * * *
8707005 AAAAATTGGTACTTTCAACTTTTCTTTAAAAATATTTTTTTTTG-AATTTTA-TTTAAAGAAAAT
1 -AAAATTGATACTTTCAACTTTTCCTCAAAAA-AATTTTTTTTGAAAATTTATTTTTAAGAAAAT
8707068 AAAATAATAA
Statistics
Matches: 163, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
115 6 0.04
116 29 0.18
117 88 0.54
118 8 0.05
120 32 0.20
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTTGAAAATTTATTTTTAAGAAAATTG
ATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAAG
Found at i:8707065 original size:58 final size:57
Alignment explanation
Indices: 8706767--8707066 Score: 237
Period size: 58 Copynumber: 5.1 Consensus size: 57
8706757 TTTTGTATAG
* * * *
8706767 GAAAAATTGATACTTTCAACTTCTCCTCAAAAAAACCCTTTTTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTTAAAAATA----TTTTTTTTG-AATTTTA-TTTTAA
* * *** * *
8706830 G-AAAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTGAAAACTTTAATTTCGAA
1 GAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAA-TTTTATTT-TAA
* * ** *
8706888 G-AAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTG-AATTTTA-TTTTAA
* * * * **
8706946 GGAAAATTGATACTTTTAACTTTTCCCTAAAAATA-TTTTTTGGAATCTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAT-TTT-ATTTTAA
* * *
8707004 GAAAAATTGGTACTTTCAACTTTTCTTTAAAAATATTTTTTTTTGAATTTTATTTAAA
1 GAAAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTTTTGAATTTTATTTTAA
8707062 GAAAA
1 GAAAA
8707067 TAAAATAATA
Statistics
Matches: 188, Mismatches: 40, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
57 7 0.04
58 104 0.55
59 38 0.20
60 10 0.05
62 28 0.15
63 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (57 bp):
GAAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAATTTTATTTTAA
Found at i:8707071 original size:5 final size:5
Alignment explanation
Indices: 8707063--8707153 Score: 57
Period size: 5 Copynumber: 17.8 Consensus size: 5
8707053 TTATTTAAAG
*
8707063 AAAAT AAAAT --AAT AAAAT AAAA- ATAA- AAAAT AAAAAT AAAAAT AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AAA-AT
* *
8707111 AAAGT AAAAT AAAGAT AAAAAT AAAAT AGAGAT AAAAAT AAAA
1 AAAAT AAAAT AAA-AT -AAAAT AAAAT A-AAAT -AAAAT AAAA
8707154 GAATATTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
3 3 0.04
4 6 0.09
5 35 0.50
6 22 0.31
7 4 0.06
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8707087 original size:6 final size:6
Alignment explanation
Indices: 8707063--8707153 Score: 78
Period size: 6 Copynumber: 14.5 Consensus size: 6
8707053 TTATTTAAAG
*
8707063 AAAAT- AAAATAA TAAAATA AAAATAA AAAATA AAAATA AAAATA AAGAAAA
1 AAAATA AAAAT-A -AAAATA AAAAT-A AAAATA AAAATA AAAATA AA-AATA
* * *
8707114 GTAAAATA AAGATA AAAAT- AAAATA GAGATA AAAATA AAA
1 --AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
8707154 GAATATTAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
5 10 0.14
6 40 0.57
7 10 0.14
8 8 0.11
9 2 0.03
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:8707135 original size:17 final size:17
Alignment explanation
Indices: 8707063--8707153 Score: 89
Period size: 17 Copynumber: 5.2 Consensus size: 17
8707053 TTATTTAAAG
8707063 AAAATAAA-ATAATAAAAT
1 AAAATAAAGAT-A-AAAAT
*
8707081 AAAAATAAAAAATAAAAAT
1 -AAAAT-AAAGATAAAAAT
*
8707100 AAAAATAAAG--AAAAGT
1 -AAAATAAAGATAAAAAT
8707116 AAAATAAAGATAAAAAT
1 AAAATAAAGATAAAAAT
*
8707133 AAAATAGAGATAAAAAT
1 AAAATAAAGATAAAAAT
8707150 AAAA
1 AAAA
8707154 GAATATTAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
15 9 0.14
16 5 0.08
17 25 0.39
18 3 0.05
19 16 0.25
20 4 0.06
21 2 0.03
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (17 bp):
AAAATAAAGATAAAAAT
Found at i:8707154 original size:40 final size:40
Alignment explanation
Indices: 8707063--8707136 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 40
8707053 TTATTTAAAG
*
8707063 AAAATAAA-ATAA-TAAAATAAAAATAAAAAATAAAAATA
1 AAAATAAAGAAAAGTAAAATAAAAATAAAAAATAAAAATA
*
8707101 AAAATAAAGAAAAGTAAAATAAAGAT-AAAAATAAAA
1 AAAATAAAGAAAAGTAAAATAAAAATAAAAAATAAAA
8707137 TAGAGATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 8 0.25
39 13 0.41
40 11 0.34
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (40 bp):
AAAATAAAGAAAAGTAAAATAAAAATAAAAAATAAAAATA
Found at i:8707350 original size:16 final size:17
Alignment explanation
Indices: 8707307--8707350 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
8707297 TTTTTTAGCT
8707307 TCTGTTTCTTCTCTGTG
1 TCTGTTTCTTCTCTGTG
*
8707324 TCTGTAT-TTCTCTGTG
1 TCTGTTTCTTCTCTGTG
*
8707340 TGT-TTTCTTCT
1 TCTGTTTCTTCT
8707351 GTTCTTCTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 2 0.09
16 15 0.65
17 6 0.26
ACGTcount: A:0.02, C:0.20, G:0.16, T:0.61
Consensus pattern (17 bp):
TCTGTTTCTTCTCTGTG
Found at i:8707583 original size:13 final size:13
Alignment explanation
Indices: 8707558--8707631 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 13
8707548 ATAACCAAAA
8707558 AAAAGAT-A-AAT
1 AAAAGATAATAAT
8707569 AAAAGA-AATAGAT
1 AAAAGATAATA-AT
8707582 AAAAGATAATAAT
1 AAAAGATAATAAT
*
8707595 AAAA-A-ATTAA-
1 AAAAGATAATAAT
*
8707605 AACAGATAAATAAT
1 AAAAGAT-AATAAT
*
8707619 AAAA-ATATTAAT
1 AAAAGATAATAAT
8707631 A
1 A
8707632 GATAAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 15
0.71 0.07 0.21
Matches are distributed among these distances:
10 3 0.06
11 12 0.24
12 8 0.16
13 20 0.40
14 7 0.14
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.22
Consensus pattern (13 bp):
AAAAGATAATAAT
Found at i:8707585 original size:24 final size:22
Alignment explanation
Indices: 8707558--8707667 Score: 80
Period size: 23 Copynumber: 4.7 Consensus size: 22
8707548 ATAACCAAAA
8707558 AAAAGATAAATAAAAGAAATAGAT
1 AAAAGATAAATAAAA-AAATA-AT
*
8707582 AAAAGATAATAATAAAAAATTAA-
1 AAAAGAT-A-AATAAAAAAATAAT
* *
8707605 AACAGATAAATAATAAAAATATT
1 AAAAGATAAATAA-AAAAATAAT
* *
8707628 AATAGATAAAAAAAATAAATATAT
1 AAAAGATAAATAAAA-AAATA-AT
*
8707652 ATAATGA-AAATAAAAA
1 A-AAAGATAAATAAAAA
8707668 CAAAAAGTTC
Statistics
Matches: 69, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
21 5 0.07
22 9 0.13
23 23 0.33
24 17 0.25
25 8 0.12
26 7 0.10
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.22
Consensus pattern (22 bp):
AAAAGATAAATAAAAAAATAAT
Found at i:8707634 original size:23 final size:23
Alignment explanation
Indices: 8707558--8707637 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 23
8707548 ATAACCAAAA
*
8707558 AAAAGATAAATAA-AAGAAATAGAT
1 AAAAGATAAATAATAA-AAATA-TT
8707582 AAAAGAT-AATAATAAAAA-ATT
1 AAAAGATAAATAATAAAAATATT
8707603 AAAACAGATAAATAATAAAAATATT
1 -AAA-AGATAAATAATAAAAATATT
*
8707628 AATAGATAAA
1 AAAAGATAAA
8707638 AAAAATAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.02
22 4 0.08
23 19 0.39
24 22 0.45
25 3 0.06
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.21
Consensus pattern (23 bp):
AAAAGATAAATAATAAAAATATT
Found at i:8707644 original size:25 final size:25
Alignment explanation
Indices: 8707610--8707673 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
8707600 ATTAAAACAG
8707610 ATAAATAATAAAAATAT-TAATAGATAA
1 ATAAA-AATAAAAATATATAAT-GA-AA
*
8707637 A-AAAAATAAATATATATAATGAAA
1 ATAAAAATAAAAATATATAATGAAA
*
8707661 ATAAAAACAAAAA
1 ATAAAAATAAAAA
8707674 GTTCATTGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
24 3 0.09
25 21 0.66
26 7 0.22
27 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.23
Consensus pattern (25 bp):
ATAAAAATAAAAATATATAATGAAA
Found at i:8707904 original size:14 final size:14
Alignment explanation
Indices: 8707886--8707925 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
8707876 AATGATTAAA
8707886 TAAAAATTAAAAT-
1 TAAAAATTAAAATC
8707899 TAAAAAATTAAAATC
1 T-AAAAATTAAAATC
*
8707914 TATAAATTAAAA
1 TAAAAATTAAAA
8707926 GGTTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 1 0.04
14 22 0.92
15 1 0.04
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAATTAAAATC
Found at i:8708128 original size:16 final size:16
Alignment explanation
Indices: 8708107--8708159 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 16
8708097 ATTCTATCAA
8708107 TTTATTAATTTAAATT
1 TTTATTAATTTAAATT
*
8708123 TTTATTAAAGTTTTAATT
1 TTTATT-AA-TTTAAATT
* *
8708141 TTT-TTAATATAAAAT
1 TTTATTAATTTAAATT
8708156 TTTA
1 TTTA
8708160 ATTGAATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
15 8 0.27
16 8 0.27
17 4 0.13
18 10 0.33
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTATTAATTTAAATT
Found at i:8708158 original size:22 final size:20
Alignment explanation
Indices: 8708121--8708162 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
8708111 TTAATTTAAA
*
8708121 TTTTTATTAAAGTTTTAATT
1 TTTTTATTAAAATTTTAATT
8708141 TTTTTAATATAAAATTTTAATT
1 TTTTT-AT-TAAAATTTTAATT
8708163 GAATAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTTATTAAAATTTTAATT
Found at i:8709734 original size:18 final size:17
Alignment explanation
Indices: 8709685--8709735 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
8709675 TATGTCAAGC
8709685 CATTTGATTCTTTCTTTT
1 CATTT-ATTCTTTCTTTT
* *
8709703 CATTTTTTAATTTCTTTT
1 CATTTATT-CTTTCTTTT
8709721 CTATTTATTCTTTCT
1 C-ATTTATTCTTTCT
8709736 CTCTCTCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 19 0.70
19 6 0.22
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.69
Consensus pattern (17 bp):
CATTTATTCTTTCTTTT
Found at i:8709885 original size:6 final size:6
Alignment explanation
Indices: 8709874--8709939 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
8709864 CCTTCTGCCC
* * * *
8709874 CTTTTT CTTTTT CTTTTT ATTTTG CTTTTCT CTTTTT CCTTTT C-ATTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTT-T CTTTTT CTTTTT CTTTTT
*
8709922 CTCTTTT CTTTTT ATTTT
1 CT-TTTT CTTTTT CTTTT
8709940 AATTTCTATT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
5 4 0.08
6 35 0.71
7 10 0.20
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:8709909 original size:19 final size:19
Alignment explanation
Indices: 8709876--8709928 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8709866 TTCTGCCCCT
8709876 TTTTCTTTT-TCTTTTT-A
1 TTTTCTTTTCTCTTTTTCA
*
8709893 TTTTGCTTTTCTCTTTTTCC
1 TTTT-CTTTTCTCTTTTTCA
*
8709913 TTTTCATTTCTCTTTT
1 TTTTCTTTTCTCTTTT
8709929 CTTTTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 4 0.13
18 5 0.16
19 18 0.58
20 4 0.13
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTCTTTTCTCTTTTTCA
Found at i:8710519 original size:17 final size:19
Alignment explanation
Indices: 8710479--8710519 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
8710469 TCAATTAATT
*
8710479 TTATATTAATATATATTTA
1 TTATATTAATATATATTAA
8710498 TTATATTAATA-A-ATTAA
1 TTATATTAATATATATTAA
8710515 TTATA
1 TTATA
8710520 CATTATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 1 0.05
19 11 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTATATTAATATATATTAA
Found at i:8712192 original size:18 final size:18
Alignment explanation
Indices: 8712148--8712216 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
8712138 CGATCACAAG
* *
8712148 TTTTCTTTTT-TTTAATT
1 TTTTATTTTTATTTTATT
* *
8712165 TTCTACTTTTATTTT-TT
1 TTTTATTTTTATTTTATT
8712182 GTTTT-TGTTTTATTTTATT
1 -TTTTAT-TTTTATTTTATT
8712201 TTTTATTTTTATTTTA
1 TTTTATTTTTATTTTA
8712217 ATTGTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 9 0.22
18 29 0.71
19 3 0.07
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTATTTTATT
Found at i:8712197 original size:23 final size:23
Alignment explanation
Indices: 8712171--8712216 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8712161 AATTTTCTAC
* *
8712171 TTTTATTTTTTGTTTTTGTTTTA
1 TTTTATTTTTTATTTTTATTTTA
8712194 TTTTATTTTTTATTTTTATTTTA
1 TTTTATTTTTTATTTTTATTTTA
8712217 ATTGTGATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (23 bp):
TTTTATTTTTTATTTTTATTTTA
Found at i:8714718 original size:3 final size:3
Alignment explanation
Indices: 8714707--8714885 Score: 151
Period size: 3 Copynumber: 61.3 Consensus size: 3
8714697 TTTTTATATA
* * * * *
8714707 TAT TGT TAT TAT TAT TAC CAT TAC TAT TAT TAT TAT TAT TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
8714755 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
8714803 TA- TAA TAG TAT TAT GGTA- TAG TA- TAT TA- TGT TA- TAT TA- TAT
1 TAT TAT TAT TAT TAT --TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
8714844 TAT TGAAT TAT TAT TAT TAT T-T T-T TAT TGT TAT TAT T-T TAT T
1 TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8714886 TCCTTTTCTC
Statistics
Matches: 146, Mismatches: 18, Indels: 24
0.78 0.10 0.13
Matches are distributed among these distances:
2 17 0.12
3 124 0.85
5 5 0.03
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:8714870 original size:16 final size:16
Alignment explanation
Indices: 8714851--8714882 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8714841 TATTATTGAA
8714851 TTATTATTATTATTTT
1 TTATTATTATTATTTT
*
8714867 TTATTGTTATTATTTT
1 TTATTATTATTATTTT
8714883 ATTTCCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
TTATTATTATTATTTT
Found at i:8717401 original size:24 final size:23
Alignment explanation
Indices: 8717374--8717460 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
8717364 ATGTATTATA
8717374 TTAATAAAGTTATTATTCGATACT
1 TTAATAAAGTTATTATT-GATACT
* *
8717398 TTAATAAAGTTATGACATG-TACT
1 TTAATAAAGTTATTA-TTGATACT
* *
8717421 ATAATAATAGAGTTATTATTTGACACT
1 -T--TAATAAAGTTATTA-TTGATACT
8717448 TTAATAAAGTTAT
1 TTAATAAAGTTAT
8717461 GACATGTATT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
23 4 0.08
24 27 0.54
25 1 0.02
26 15 0.30
27 3 0.06
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (23 bp):
TTAATAAAGTTATTATTGATACT
Found at i:8717436 original size:50 final size:50
Alignment explanation
Indices: 8717356--8717481 Score: 198
Period size: 50 Copynumber: 2.5 Consensus size: 50
8717346 TTTCAAAATT
* *
8717356 GTTACGACATGTATTATATTAATAAAGTTATTATTCGATACTTTAATAAA
1 GTTATGACATGTATTATATTAATAAAGTTATTATTCGACACTTTAATAAA
* * * *
8717406 GTTATGACATGTACTATAATAATAGAGTTATTATTTGACACTTTAATAAA
1 GTTATGACATGTATTATATTAATAAAGTTATTATTCGACACTTTAATAAA
8717456 GTTATGACATGTATTATATTAATAAA
1 GTTATGACATGTATTATATTAATAAA
8717482 ATTTTTACTT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41
Consensus pattern (50 bp):
GTTATGACATGTATTATATTAATAAAGTTATTATTCGACACTTTAATAAA
Found at i:8720774 original size:17 final size:17
Alignment explanation
Indices: 8720754--8720812 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
8720744 TATTTTATTT
8720754 TTTTTATCCTTTTTTAA
1 TTTTTATCCTTTTTTAA
**
8720771 TTTTTACTTTTTTTTTAA
1 TTTTTA-TCCTTTTTTAA
* * **
8720789 TTTTTTTGCGCTTTTAA
1 TTTTTATCCTTTTTTAA
8720806 TTTTTAT
1 TTTTTAT
8720813 TTTTTAATTA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 19 0.58
18 14 0.42
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTATCCTTTTTTAA
Found at i:8720774 original size:18 final size:19
Alignment explanation
Indices: 8720753--8720794 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8720743 ATATTTTATT
8720753 TTTTTTA-TCCTTTTTTAA
1 TTTTTTACTCCTTTTTTAA
**
8720771 -TTTTTACTTTTTTTTTAA
1 TTTTTTACTCCTTTTTTAA
8720789 TTTTTT
1 TTTTTT
8720795 TGCGCTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 6 0.30
18 9 0.45
19 5 0.25
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTACTCCTTTTTTAA
Found at i:8720804 original size:35 final size:36
Alignment explanation
Indices: 8720765--8720849 Score: 102
Period size: 35 Copynumber: 2.3 Consensus size: 36
8720755 TTTTATCCTT
* *
8720765 TTTTAATTTTTACTTTTTT-TTTAATTTTTTTGC-GC
1 TTTTAATTTTTA-TTTTTTATTAAATTTTTTTGCACC
*
8720800 TTTTAATTTTTATTTTTTAATTAAATTTTTTTTCACC
1 TTTTAATTTTTATTTTTT-ATTAAATTTTTTTGCACC
8720837 TTTTGAATTTTTA
1 TTTT-AATTTTTA
8720850 GGTTTTCAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 6 0.14
35 12 0.28
36 12 0.28
37 5 0.12
38 8 0.19
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.69
Consensus pattern (36 bp):
TTTTAATTTTTATTTTTTATTAAATTTTTTTGCACC
Found at i:8723336 original size:59 final size:59
Alignment explanation
Indices: 8723276--8723501 Score: 298
Period size: 60 Copynumber: 3.8 Consensus size: 59
8723266 AAAATATATA
* * * *
8723276 AAAATGTATAAAAAAATATTTTTGAGGAAAAATTGGAAGTA-CAAATTTTTCTT-AAAAT
1 AAAATTTAAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATC-AATTTTTCTTGAAATT
* *
8723334 AAAA-TTATAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT
1 AAAATTTA-AAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAATT
* *
8723393 AAAATTTCAAAAAAAAAAATTTTTGAGGAAAAATTAAAAGTATCAATTTTTCTTGAAATT
1 AAAATTT-AAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAATT
* *
8723453 AGAATTTAAAAAAAAAGTA-TTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAATTTAAAAAAAAA-TATTTTTGAGGAAAAATTGAAAGTATCAATTTT
8723502 CCTATACAAA
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
57 2 0.01
58 43 0.29
59 46 0.31
60 56 0.38
61 1 0.01
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.35
Consensus pattern (59 bp):
AAAATTTAAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAATT
Found at i:8723348 original size:58 final size:57
Alignment explanation
Indices: 8723276--8723501 Score: 276
Period size: 58 Copynumber: 3.8 Consensus size: 57
8723266 AAAATATATA
* * *
8723276 AAAATGTATAAAAAAATATTTTTGAGGAAAAATTGGAAGTA-CAAATTTTTCTTAAAAT
1 AAAATTTA-AAAAAAATATTTTTGAGGAAAAATTGAAAGTATC-AATTTTTCTTAAATT
* *
8723334 AAAATTATAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATT
1 AAAATT-TAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCT-TAAATT
* *
8723393 AAAATTTCAAAAAAAAAAATTTTTGAGGAAAAATTAAAAGTATCAATTTTTCTTGAAATT
1 AAAATTT--AAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTT-AAATT
* *
8723453 AGAATTTAAAAAAAA-AGTATTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAATTTAAAAAAAATA-T-TTTTGAGGAAAAATTGAAAGTATCAATTTT
8723502 CCTATACAAA
Statistics
Matches: 148, Mismatches: 12, Indels: 15
0.85 0.07 0.09
Matches are distributed among these distances:
57 1 0.01
58 54 0.36
59 41 0.28
60 52 0.35
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAATTTAAAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTAAATT
Found at i:8726849 original size:58 final size:57
Alignment explanation
Indices: 8726748--8726973 Score: 237
Period size: 59 Copynumber: 3.9 Consensus size: 57
8726738 AAGTTTCTAG
* * *
8726748 AATAAAAATTTTCAAAAATA-TTTTG-GGAGAAAGTTGAAAGTATCAATTTTCCTAAA
1 AATAAAAAGTTTAAAAAATATTTTTGAGGA-AAAATTGAAAGTATCAATTTTCCTAAA
** *
8726804 AATAAAAAAGTTTAAAAAATATTTTTGAGGAAAAATTGAAAGTATCTGTTTTCTTTAAA
1 AAT-AAAAAGTTTAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTC-CTAAA
* * * *
8726863 AAT--AAATTTCTAAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTCCCTTGAA
1 AATAAAAAGTT-TAAAAAATAT-TTTTGAGGAAAAA-TTGAAAGTATCAATTTTCC-TAAA
*
8726922 GATAAAAAGATTTAAAAAATATTTTT-AGGAAAAAATTGAAAGTATCAATTTT
1 AATAAAAAG-TTTAAAAAATATTTTTGAGG-AAAAATTGAAAGTATCAATTTT
8726974 TCCTTGAAAT
Statistics
Matches: 142, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
56 8 0.06
57 25 0.18
58 36 0.25
59 49 0.35
60 9 0.06
61 13 0.09
62 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (57 bp):
AATAAAAAGTTTAAAAAATATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTAAA
Found at i:8726902 original size:59 final size:57
Alignment explanation
Indices: 8726752--8727090 Score: 225
Period size: 59 Copynumber: 5.9 Consensus size: 57
8726742 TTCTAGAATA
** * * *
8726752 AAAATTTTCAAAAATA-TTTTGGGAGAAAGTTGAAAGTATCAATTTTC-CTAAAAAT
1 AAAATTTAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT
**
8726807 AAAAAAGTTT-AAAAAATATTTTTGAGGAAAAA-TTGAAAGTATCTGTTTTCTTTAAAAAT
1 --AAAA-TTTAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT
* * *
8726866 AAATTTCTAAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTCCCTTGAAGATAA-
1 AAAATT-TAAAAAA-ATATTTTTAGGAAAAAGTTGAAAGTATCAATTT-TCTTTAA-A-AAT
* * *
8726927 AAAGATTT-AAAAAATATTTTTAGGAAAAAATTGAAAGTATCAATTTTTCCTT-GAAAT
1 AAA-ATTTAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAA-TTTTCTTTAAAAAT
* * * * * * *
8726984 TAAATTAAAAAAAATATTTTGAAG-AAAAGTGGGAAA-TACCAATTTTCCTT-AAAA-
1 AAAATTTAAAAAAATATTTTTAGGAAAAAGT-TGAAAGTATCAATTTTCTTTAAAAAT
** * * *
8727038 AAGTTTGTCAAGAAAAATGTTTTAAGG-AATAGTTGAAAGTATCAAATTTTCTT
1 AAAATT-T-AA-AAAAATATTTTTAGGAAAAAGTTGAAAGTATC-AATTTTCTT
8727091 GTACAAAAAG
Statistics
Matches: 225, Mismatches: 36, Indels: 41
0.75 0.12 0.14
Matches are distributed among these distances:
54 3 0.01
55 11 0.05
56 23 0.10
57 56 0.25
58 44 0.20
59 66 0.29
60 13 0.06
61 5 0.02
62 4 0.02
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAATTTAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT
Found at i:8726913 original size:27 final size:27
Alignment explanation
Indices: 8726883--8726974 Score: 62
Period size: 27 Copynumber: 3.2 Consensus size: 27
8726873 TAAAAAATAT
8726883 ATTTTTAGGAAAAAGTTGAAAGTATCA
1 ATTTTTAGGAAAAAGTTGAAAGTATCA
* * **
8726910 ATTTCCCTTGAAGATAAAAAGATTTAAAAAAT--
1 ATTT---TT--AG-GAAAAAG-TTGAAAGTATCA
*
8726942 ATTTTTAGGAAAAAATTGAAAGTATCA
1 ATTTTTAGGAAAAAGTTGAAAGTATCA
8726969 ATTTTT
1 ATTTTT
8726975 CCTTGAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 18
0.64 0.12 0.24
Matches are distributed among these distances:
25 7 0.15
26 5 0.11
27 12 0.26
29 2 0.04
30 2 0.04
32 6 0.13
33 6 0.13
34 7 0.15
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (27 bp):
ATTTTTAGGAAAAAGTTGAAAGTATCA
Found at i:8726997 original size:118 final size:116
Alignment explanation
Indices: 8726761--8727000 Score: 301
Period size: 118 Copynumber: 2.1 Consensus size: 116
8726751 AAAAATTTTC
* * *
8726761 AAAA-ATATTTTGGGAGAAAGTTGAAAGTATCAATTTTCCTAAAAATAAAAAAGTTTAAAAAATA
1 AAAATATATTTTAGGAAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAAAAGTTTAAAAAATA
* **
8726825 TTTTTGAGGAAAAATTGAAAGTATCTGTTTTCTTTAAAAATAAATTTCTAA
66 TTTTTGAGGAAAAATTGAAAGTATCTGTTTTCCTTAAAAATAAATTTAAAA
* *
8726876 AAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTCCCTTGAAGAT-AAAAAGATTTAAAAA
1 AAAATATA-TTTTAGGAAAAAGTTGAAAGTATCAATTTCCC-TAAAAATAAAAAAG-TTTAAAAA
* *
8726940 ATATTTTT-AGGAAAAAATTGAAAGTATCAAT-TTTTCCTTGAAATTAAA-TTAAAA
63 ATATTTTTGAGG-AAAAATTGAAAGTATC--TGTTTTCCTTAAAAATAAATTTAAAA
8726994 AAAATAT
1 AAAATAT
8727001 TTTGAAGAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
115 4 0.04
116 3 0.03
117 38 0.35
118 48 0.44
119 14 0.13
120 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.35
Consensus pattern (116 bp):
AAAATATATTTTAGGAAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAAAAGTTTAAAAAATA
TTTTTGAGGAAAAATTGAAAGTATCTGTTTTCCTTAAAAATAAATTTAAAA
Found at i:8728232 original size:17 final size:17
Alignment explanation
Indices: 8728202--8728243 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
8728192 TATGCATCTA
*
8728202 CATCATTGCATTCTATG
1 CATCATTTCATTCTATG
*
8728219 CATTATTTCATTCTATG
1 CATCATTTCATTCTATG
8728236 CATCATTT
1 CATCATTT
8728244 TCATGATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (17 bp):
CATCATTTCATTCTATG
Found at i:8731120 original size:9 final size:9
Alignment explanation
Indices: 8731106--8731207 Score: 91
Period size: 10 Copynumber: 10.8 Consensus size: 9
8731096 TGGGTGAAAG
8731106 AATGAAAAA
1 AATGAAAAA
8731115 AATGAAAAAA
1 AATG-AAAAA
* **
8731125 AAAGGTAAA
1 AATGAAAAA
8731134 AA-GAAAACA
1 AATGAAAA-A
8731143 AATGAAAAA
1 AATGAAAAA
8731152 AATGAAAGAAA
1 AATG-AA-AAA
*
8731163 AAAGAGAAAA
1 AATGA-AAAA
8731173 AATGAAAAAA
1 AATG-AAAAA
8731183 AATG-AAAA
1 AATGAAAAA
8731191 AATGAAAAA
1 AATGAAAAA
8731200 AGATGAAA
1 A-ATGAAA
8731208 GGGAAAAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
8 11 0.14
9 22 0.29
10 36 0.47
11 8 0.10
ACGTcount: A:0.75, C:0.01, G:0.15, T:0.09
Consensus pattern (9 bp):
AATGAAAAA
Done.