Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 39 of 138
Found at i:8731179 original size:8 final size:8
Alignment explanation
Indices: 8731142--8731200 Score: 52
Period size: 8 Copynumber: 7.4 Consensus size: 8
8731132 AAAAGAAAAC
8731142 AAATGAAAA
1 AAATG-AAA
8731151 AAATGAAA
1 AAATGAAA
*
8731159 GAA--AAA
1 AAATGAAA
*
8731165 AGA-GAAA
1 AAATGAAA
8731172 AAATGAAAAA
1 AAATG--AAA
8731182 AAATGAAA
1 AAATGAAA
8731190 AAATGAAA
1 AAATGAAA
8731198 AAA
1 AAA
8731201 GATGAAAGGG
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
6 4 0.10
7 5 0.12
8 20 0.48
9 5 0.12
10 8 0.19
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (8 bp):
AAATGAAA
Found at i:8731189 original size:18 final size:18
Alignment explanation
Indices: 8731106--8731207 Score: 98
Period size: 18 Copynumber: 5.4 Consensus size: 18
8731096 TGGGTGAAAG
8731106 AATGAAAAAAATGAAAAAAA
1 AATG-AAAAAATG-AAAAAA
* * *
8731126 AAGGTAAAAA-GAAAACA
1 AATGAAAAAATGAAAAAA
8731143 AATGAAAAAAATGAAAGAAAA
1 AATG-AAAAAATG-AA-AAAA
*
8731164 AAGAGAAAAAATGAAAAAA
1 AA-TGAAAAAATGAAAAAA
8731183 AATGAAAAAATGAAAAAA
1 AATGAAAAAATGAAAAAA
*
8731201 GATGAAA
1 AATGAAA
8731208 GGGAAAAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
17 8 0.12
18 27 0.40
19 12 0.18
20 7 0.10
21 13 0.19
22 1 0.01
ACGTcount: A:0.75, C:0.01, G:0.15, T:0.09
Consensus pattern (18 bp):
AATGAAAAAATGAAAAAA
Found at i:8732856 original size:42 final size:42
Alignment explanation
Indices: 8732761--8733228 Score: 251
Period size: 44 Copynumber: 10.9 Consensus size: 42
8732751 GTGATTGTCA
*
8732761 AGGAGCATTTA--TTTTTCAAAGTCGTGGTTA-CCTCTGTTTAG
1 AGGAGCATTTATTTTTTTCAAAGTTGTGG--AGCCTCTGTTTAG
*
8732802 AGGAGCAGTTTATTTTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCA-TTTATTTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* * *
8732845 AGGAGCATTTATTTCTTTAAAAGTTGTTGAGCCTCTGTTTAG
1 AGGAGCATTTATTTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* * * *
8732887 AGGAGCTTTGTTTATTTTTTCCAAAGTTGTTGAGCCTCTGATTAG
1 AGGAGC---ATTTATTTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* * * *
8732932 AAGAGCTTTGTTTATTTTTTTCAAAGTTGTTGAGCCT-TTTATTAG
1 AGGAGC---ATTTATTTTTTTCAAAGTTGTGGAGCCTCTGT-TTAG
* * * * **
8732977 AGGAG-TTTTGTTTATTTTTCCAAAGATGTTGAGCCTCTAATTAG
1 AGGAGCATTT-ATT-TTTTT-CAAAGTTGTGGAGCCTCTGTTTAG
* * *
8733021 AGGAGC-TTTGTTTTATATTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCATTT-ATTT-T-TTTCAAAGTTGTGGAGCCTCTGTTTAG
* ** ** * *
8733065 -GAGAGCCCTTTA--TTTTTCAAAGTCATCAAGCCTTTGATTAG
1 AG-GAG-CATTTATTTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
* * * **
8733106 AGGAGC-TTTGTTTTATTTCTTAAAGTCGTTGAGCCTCTAATTAG
1 AGGAGCATTTATTTT-TTTC--AAAGTTGTGGAGCCTCTGTTTAG
* * * *
8733150 AGGAGC-TTTGTTTTATTTCTTAAAGTCGTTGAGCCTCTATTTAG
1 AGGAGCATTTATTTT-TTTC--AAAGTTGTGGAGCCTCTGTTTAG
* * *
8733194 AGGAACCA-TTATTTTTTTGAAAGTTGT-CAGCCTCT
1 AGG-AGCATTTATTTTTTTCAAAGTTGTGGAGCCTCT
8733229 ACTTAGGGGA
Statistics
Matches: 358, Mismatches: 43, Indels: 52
0.79 0.09 0.11
Matches are distributed among these distances:
39 3 0.01
40 1 0.00
41 44 0.12
42 56 0.16
43 26 0.07
44 138 0.39
45 87 0.24
46 3 0.01
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.43
Consensus pattern (42 bp):
AGGAGCATTTATTTTTTTCAAAGTTGTGGAGCCTCTGTTTAG
Found at i:8732916 original size:45 final size:44
Alignment explanation
Indices: 8732791--8733197 Score: 372
Period size: 44 Copynumber: 9.3 Consensus size: 44
8732781 GTCGTGGTTA
* * *
8732791 CCTCTGTTTAGAGGAGC--AGTTTATTTTTTTCAAAGTTGTGGTG
1 CCTCTGTTTAGAGGAGCTTTGTTTA-TTTTTTCAAAGTTGTTGAG
* *
8732834 CCTCTGTTTAGAGGAGC---ATTTATTTCTTTAAAAGTTGTTGAG
1 CCTCTGTTTAGAGGAGCTTTGTTTATTT-TTTCAAAGTTGTTGAG
8732876 CCTCTGTTTAGAGGAGCTTTGTTTATTTTTTCCAAAGTTGTTGAG
1 CCTCTGTTTAGAGGAGCTTTGTTTATTTTTT-CAAAGTTGTTGAG
* *
8732921 CCTCTGATTAGAAGAGCTTTGTTTATTTTTTTCAAAGTTGTTGAG
1 CCTCTGTTTAGAGGAGCTTTGTTTA-TTTTTTCAAAGTTGTTGAG
* * * *
8732966 CCT-TTTATTAGAGGAGTTTTGTTTATTTTTCCAAAGATGTTGAG
1 CCTCTGT-TTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTTGAG
** * *
8733010 CCTCTAATTAGAGGAGCTTTGTTT-TATATTTCAAAGTCGTTGAG
1 CCTCTGTTTAGAGGAGCTTTGTTTAT-TTTTTCAAAGTTGTTGAG
** ** **
8733054 CCTCTGTTTAG-GAGAGC--CCTTTA-TTTTTCAAAGTCATCAAG
1 CCTCTGTTTAGAG-GAGCTTTGTTTATTTTTTCAAAGTTGTTGAG
* * * *
8733095 CCTTTGATTAGAGGAGCTTTGTTTTATTTCTT-AAAGTCGTTGAG
1 CCTCTGTTTAGAGGAGCTTTG-TTTATTTTTTCAAAGTTGTTGAG
** * *
8733139 CCTCTAATTAGAGGAGCTTTGTTTTATTTCTT-AAAGTCGTTGAG
1 CCTCTGTTTAGAGGAGCTTTG-TTTATTTTTTCAAAGTTGTTGAG
*
8733183 CCTCTATTTAGAGGA
1 CCTCTGTTTAGAGGA
8733198 ACCATTATTT
Statistics
Matches: 308, Mismatches: 40, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
41 30 0.10
42 38 0.12
43 19 0.06
44 136 0.44
45 79 0.26
46 6 0.02
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.43
Consensus pattern (44 bp):
CCTCTGTTTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTTGAG
Found at i:8733226 original size:129 final size:127
Alignment explanation
Indices: 8732768--8733226 Score: 400
Period size: 129 Copynumber: 3.5 Consensus size: 127
8732758 TCAAGGAGCA
* *
8732768 TTTATTTTTCAAAGTCGTGGTTA-CCTCTGTTTAGAGGAG-CAGTTTATTTTTTTCAAAGTTGTG
1 TTTATTTTT-AAAGTCGT--TGAGCCTCTATTTAGAGGAGCCA--TTATTTTTTTCAAAGTTGT-
** * * * * **
8732831 GTGCCTCTGTTTAGAGGAGC---ATTTATTTCTTTAAAAGTTGTTGAGCCTCTGTTTAGAGGAGC
60 CAGCCTTTGATTAGAGGAGCTTTGTTTATTTC-TTCAAAG-TGTTGAGCCTCTAATTAGAGGAGC
8732893 TTTG-
123 TTTGT
* * **
8732897 TTTATTTTTTCCAAAGTTGTTGAGCCTCTGA-TTAGAAGAGCTTTGTTTATTTTTTTCAAAGTTG
1 TTTA-TTTTT--AAAGTCGTTGAGCCTCT-ATTTAGAGGAGC---CATTATTTTTTTCAAAGTTG
* * *
8732961 TTGAGCCTTTTATTAGAGGAGTTTTGTTTATTT-TTCCAAAGATGTTGAGCCTCTAATTAGAGGA
59 -TCAGCCTTTGATTAGAGGAGCTTTGTTTATTTCTT-CAAAG-TGTTGAGCCTCTAATTAGAGGA
8733025 GCTTTGT
121 GCTTTGT
* * * * **
8733032 TTTATATTTCAAAGTCGTTGAGCCTCTGTTTAG-GAGAGCCCTT-TATTTTTCAAAGTCATCAAG
1 TTTAT-TTTTAAAGTCGTTGAGCCTCTATTTAGAG-GAGCCATTATTTTTTTCAAAGTTGTC-AG
8733095 CCTTTGATTAGAGGAGCTTTGTTTTATTTCTT-AAAGTCGTTGAGCCTCTAATTAGAGGAGCTTT
63 CCTTTGATTAGAGGAGCTTTG-TTTATTTCTTCAAAGT-GTTGAGCCTCTAATTAGAGGAGCTTT
8733159 GT
126 GT
* *
8733161 TTTATTTCTTAAAGTCGTTGAGCCTCTATTTAGAGGAACCATTATTTTTTTGAAAGTTGTCAGCC
1 TTTATTT-TTAAAGTCGTTGAGCCTCTATTTAGAGGAGCCATTATTTTTTTCAAAGTTGTCAGCC
8733226 T
65 T
8733227 CTACTTAGGG
Statistics
Matches: 270, Mismatches: 36, Indels: 48
0.76 0.10 0.14
Matches are distributed among these distances:
128 4 0.01
129 110 0.41
130 41 0.15
131 10 0.04
132 33 0.12
133 27 0.10
134 31 0.11
135 14 0.05
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.44
Consensus pattern (127 bp):
TTTATTTTTAAAGTCGTTGAGCCTCTATTTAGAGGAGCCATTATTTTTTTCAAAGTTGTCAGCCT
TTGATTAGAGGAGCTTTGTTTATTTCTTCAAAGTGTTGAGCCTCTAATTAGAGGAGCTTTGT
Found at i:8735711 original size:58 final size:56
Alignment explanation
Indices: 8735512--8735701 Score: 260
Period size: 58 Copynumber: 3.3 Consensus size: 56
8735502 TTTTTCAATG
8735512 ATTTTCC-T-AAAATAAAATTTAAAAAATATATTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAAATAAAATTTAAAAAATAT-TTTTGAGGAAAAGTTGAAAGTATCA
8735567 ATTTTCCTTAAAAATAAAATTCTAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAAATAAAATT-T--AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCA
* * * *
8735626 ATTTCCCTGAAAATAAAAAACTTTAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAA-ATAAAA-TTTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
8735684 ATTTTCCTTAAAAATAAA
1 ATTTTCCTTAAAAATAAA
8735702 GTTTCTAAAA
Statistics
Matches: 119, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
55 7 0.06
56 1 0.01
57 15 0.13
58 44 0.37
59 35 0.29
60 15 0.13
61 2 0.02
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.34
Consensus pattern (56 bp):
ATTTTCCTTAAAAATAAAATTTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:8735756 original size:131 final size:129
Alignment explanation
Indices: 8735574--8735844 Score: 338
Period size: 131 Copynumber: 2.1 Consensus size: 129
8735564 TCAATTTTCC
* ** * *
8735574 TTAAAAATAAAA-TTCTAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTCCC-TGAA
1 TTAAAAA-AAAATTTCCAAAAAAAGCA-TTTTAGAGAAAAGTTGAAAATATCAATTTCCCTTG-A
8735637 AATAAAAA-ACTTTAAAAAATATTTTTGAAG-AAAAGTTGAAAGTATC-AATTTTCCTTAAAAAT
63 AATAAAAAGA-TTTAAAAAATATTTTT-AAGAAAAAGTTG-AAGTATCGAATTTTCCTTAAAAAT
8735699 AAAGTT
125 AAA-TT
*
8735705 TCTAAAATAAAAATTTCCAAAAAAAGCATTTTAGAG-AAAGTTGAAAATATCAATTTCCCTTGAG
1 T-TAAAA-AAAAATTTCCAAAAAAAGCATTTTAGAGAAAAGTTGAAAATATCAATTTCCCTTGAA
* * *
8735769 ATAAAAAGATTTAAAAAATATTTTTAAGAAAAAGTTGAAGTATCGATTTTTCCTTGAAATTAAAT
64 ATAAAAAGATTTAAAAAATATTTTTAAGAAAAAGTTGAAGTATCGAATTTTCCTTAAAAATAAAT
8735834 T
129 T
8735835 TTAAAAAAAA
1 TTAAAAAAAA
8735845 GCATTTTGAA
Statistics
Matches: 124, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
128 4 0.03
129 5 0.04
130 13 0.10
131 71 0.57
132 19 0.15
133 12 0.10
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (129 bp):
TTAAAAAAAAATTTCCAAAAAAAGCATTTTAGAGAAAAGTTGAAAATATCAATTTCCCTTGAAAT
AAAAAGATTTAAAAAATATTTTTAAGAAAAAGTTGAAGTATCGAATTTTCCTTAAAAATAAATT
Found at i:8735936 original size:58 final size:54
Alignment explanation
Indices: 8735781--8735942 Score: 125
Period size: 58 Copynumber: 2.9 Consensus size: 54
8735771 AAAAAGATTT
* * *
8735781 AAAAAATATTTTTAAGAAAAAGTTGAAGTATCGATTTTTCCTTGAAATTAAATTTTAA
1 AAAAAAGA-TTTTAAGGAAAAGTTGAAGTATCAATTTTTCCTT-AAA--AAATTTTAA
* * *
8735839 AAAAAAGCATTTTGAA-GAAAAGTGGGAACTACCAA-TTTTCCTTAAAAAAGTTTGTTAA
1 AAAAAAG-ATTTT-AAGGAAAAGT-TGAAGTATCAATTTTTCCTTAAAAAA--TT-TTAA
*
8735897 GAAAAATG-TTTTAAGGAAAAGTTGAAAGTATCAATTTTT-CTTAAAA
1 -AAAAAAGATTTTAAGGAAAAGTTG-AAGTATCAATTTTTCCTTAAAA
8735943 TAAAAAACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
55 3 0.04
56 3 0.04
57 30 0.36
58 32 0.38
59 16 0.19
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.35
Consensus pattern (54 bp):
AAAAAAGATTTTAAGGAAAAGTTGAAGTATCAATTTTTCCTTAAAAAATTTTAA
Found at i:8738744 original size:16 final size:15
Alignment explanation
Indices: 8738718--8738747 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8738708 GCATGCATCG
8738718 TCATTCATTACATTT
1 TCATTCATTACATTT
8738733 TCATTGCATTACATT
1 TCATT-CATTACATT
8738748 CAACAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.20, G:0.03, T:0.50
Consensus pattern (15 bp):
TCATTCATTACATTT
Found at i:8741574 original size:9 final size:10
Alignment explanation
Indices: 8741555--8741585 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
8741545 ATAATGGGTG
8741555 AAAGAAAAAA
1 AAAGAAAAAA
8741565 AAAGAAAAAA
1 AAAGAAAAAA
8741575 AAAGAAAAAA
1 AAAGAAAAAA
8741585 A
1 A
8741586 GGAAAATGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:8742348 original size:56 final size:56
Alignment explanation
Indices: 8742253--8742410 Score: 289
Period size: 56 Copynumber: 2.8 Consensus size: 56
8742243 AAAATTGGTG
*
8742253 CTGAAAAGCCCATGAACAATGATCAAGTGATGGAGGATGAAATTTGCTCTGAAATA
1 CTGAGAAGCCCATGAACAATGATCAAGTGATGGAGGATGAAATTTGCTCTGAAATA
*
8742309 CTGAGAAGCCCATGAACAATGATCAAGTGATGGATGATGAAATTTGCTCTGAAATA
1 CTGAGAAGCCCATGAACAATGATCAAGTGATGGAGGATGAAATTTGCTCTGAAATA
*
8742365 CTGAGAAGCCCATGAACAATGATCAAGTGATGAAGGATGAAATTTG
1 CTGAGAAGCCCATGAACAATGATCAAGTGATGGAGGATGAAATTTG
8742411 TACTGAGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 98 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (56 bp):
CTGAGAAGCCCATGAACAATGATCAAGTGATGGAGGATGAAATTTGCTCTGAAATA
Found at i:8742774 original size:21 final size:21
Alignment explanation
Indices: 8742750--8742790 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8742740 ATTTTTAAGT
8742750 TTTCAAATGAGAATCTTTGAA
1 TTTCAAATGAGAATCTTTGAA
8742771 TTTCAAATGAGAATCTTTGA
1 TTTCAAATGAGAATCTTTGA
8742791 GGTGTGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (21 bp):
TTTCAAATGAGAATCTTTGAA
Found at i:8743375 original size:43 final size:43
Alignment explanation
Indices: 8743227--8744033 Score: 517
Period size: 43 Copynumber: 18.7 Consensus size: 43
8743217 GAGCAATTTA
* * * *
8743227 TTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTA--
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGC-ATTTATG
* * * * * * *
8743269 -CTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGGGTAATTTA--
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAG-CATTTATG
* *
8743310 TTTTTTCAAAGTTG-TAATGCCTCTATTTAGAAGAGCATTTATG
1 TTTTTTCAAAGTTGTTGA-GCCTCTGTTTAGAAGAGCATTTATG
* * * * * * *
8743353 TTTTTTCAAAGTCGTTGAGCCTCTGATTATAGGAGCTTTGTTTA
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATT-TATG
*
8743397 TTTTTTCAAAGTTG-TAATGCCTCTGTTTAG-AGAAGCATTTATG
1 TTTTTTCAAAGTTGTTGA-GCCTCTGTTTAGAAG-AGCATTTATG
* * * *
8743440 TTTTTCCAAAGTCGTTGAGCCTCTGTTTAGAAGAGCCTTGT-TT
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATT-TATG
*
8743483 TTTTTTCAAAAGTTGTAAT-A-CCTCTGTTTAGAGGAGCATTTATG
1 TTTTTTC-AAAGTTGT--TGAGCCTCTGTTTAGAAGAGCATTTATG
* * * *
8743527 TTTTTTCAAAGTCGTTGAGCCTTTATTTAG-AGAAGCCTTGT-T-
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAG-AGCATT-TATG
* * *
8743569 TATTTTTCAAAAGTTATTGAACCTCTGTTTAGAGGAGCATTTATG
1 T-TTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAAGAGCATTTATG
* * * * * * * * * * *
8743614 CTTTTCCGAAGTCGTTGAGCTTTTGATTAGAGGAGCTTTGTTTA
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATT-TATG
* * * * *
8743658 TTTTTTCAAAGTTGTAGTGCTTCTATTTAGAAAAGCATTTATG
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATTTATG
* * * * *
8743701 TTTTTCCAAAGTCGTTGAGCCTATGTTTAG-AGAAGC-CTTATT
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAG-AGCATTTATG
* * *
8743743 TATTTTTCAAAAGTTG-TAATGCCTCCTCTTTAGAGGAGCATTTATG
1 T-TTTTTC-AAAGTTGTTGA-GCCT-CTGTTTAGAAGAGCATTTATG
* * *
8743789 TTTTTCCAAAGTTGTTGAGCCTCTGTTTAGAAAAGCCTTGT-T-
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATT-TATG
* *
8743831 TATTTTTCAAAGTTGTAGTGCCTCTGTTTAGAAGAGCATTTATG
1 T-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATTTATG
* * * *
8743875 TTTTTTCAAAGTCGTTAAGCCTCTGTTTAGAGGAACATTTATG
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATTTATG
* * * *
8743918 TTTTTTCAAAGTTGTTGAGCCTTTGATTAGATA-AGC-TTTGTTT
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGA-AGAGCATTT-ATG
* ** * *
8743961 TTTTTTTAAAGTCATTGAGCTTCTATTTAG-AGAAGCATTTATG
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAG-AGCATTTATG
* ** *
8744004 -TTTCTCAAAGTCATTGAGCCTCTGCTTAGA
1 TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGA
8744034 GGAACTTTGA
Statistics
Matches: 585, Mismatches: 136, Indels: 87
0.72 0.17 0.11
Matches are distributed among these distances:
41 42 0.07
42 63 0.11
43 300 0.51
44 155 0.26
45 18 0.03
46 7 0.01
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.43
Consensus pattern (43 bp):
TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAAGAGCATTTATG
Found at i:8743410 original size:87 final size:87
Alignment explanation
Indices: 8743223--8743932 Score: 798
Period size: 87 Copynumber: 8.2 Consensus size: 87
8743213 CAATGAGCAA
* ** * * * *
8743223 TTTATTTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTA--CTTTT-CAAAGTTGTGG
1 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAGAGC-ATTTATGTTTTTCCAAAGTCGTTG
* * * **
8743285 TGCCTTTGTTTAGAGG-G-GTAA
65 AGCCTCTGTTTAGAGGAGCCTTG
* *
8743306 TTTATTTTTTCAAAGTTGTAATGCCTCTATTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTGA
1 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTTGA
* * *
8743371 GCCTCTGATTATAGGAGCTTTG
66 GCCTCTGTTTAGAGGAGCCTTG
8743393 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAG-AGAAGCATTTATGTTTTTCCAAAGTCGTTG
1 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAG-AGCATTTATGTTTTTCCAAAGTCGTTG
*
8743457 AGCCTCTGTTTAGAAGAGCCTTG
65 AGCCTCTGTTTAGAGGAGCCTTG
* * *
8743480 TTT-TTTTTTCAAAAGTTGTAATACCTCTGTTTAGAGGAGCATTTATGTTTTTTCAAAGTCGTTG
1 TTTATTTTTTC-AAAGTTGTAATGCCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTTG
* * *
8743544 AGCCTTTATTTAGAGAAGCCTTG
65 AGCCTCTGTTTAGAGGAGCCTTG
* * * *
8743567 TTTA-TTTTTCAAAAG-T-TATTGAACCTCTGTTTAGAGGAGCATTTATGCTTTTCCGAAGTCGT
1 TTTATTTTTTC-AAAGTTGTAATG--CCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGT
* * * *
8743629 TGAGCTTTTGATTAGAGGAGCTTTG
63 TGAGCCTCTGTTTAGAGGAGCCTTG
* * * *
8743654 TTTATTTTTTCAAAGTTGTAGTGCTTCTATTTAGAAAAGCATTTATGTTTTTCCAAAGTCGTTGA
1 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTTGA
* * *
8743719 GCCTATGTTTAGAGAAGCCTTA
66 GCCTCTGTTTAGAGGAGCCTTG
* * *
8743741 TTTA-TTTTTCAAAAGTTGTAATGCCTCCTCTTTAGAGGAGCATTTATGTTTTTCCAAAGTTGTT
1 TTTATTTTTTC-AAAGTTGTAATGCCT-CTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTT
**
8743805 GAGCCTCTGTTTAGAAAAGCCTTG
64 GAGCCTCTGTTTAGAGGAGCCTTG
* * *
8743829 TTTA-TTTTTCAAAGTTGTAGTGCCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTAA
1 TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTTGA
* *
8743893 GCCTCTGTTTAGAGGAACATT-
66 GCCTCTGTTTAGAGGAGCCTTG
* *
8743914 TATGTTTTTTCAAAGTTGT
1 TTTATTTTTTCAAAGTTGT
8743933 TGAGCCTTTG
Statistics
Matches: 538, Mismatches: 72, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
82 5 0.01
83 35 0.07
84 4 0.01
85 26 0.05
86 82 0.15
87 310 0.58
88 72 0.13
89 4 0.01
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.44
Consensus pattern (87 bp):
TTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAAGAGCATTTATGTTTTTCCAAAGTCGTTGA
GCCTCTGTTTAGAGGAGCCTTG
Found at i:8743628 original size:261 final size:261
Alignment explanation
Indices: 8743306--8743932 Score: 884
Period size: 261 Copynumber: 2.4 Consensus size: 261
8743296 AGAGGGGTAA
* * *
8743306 TTTATTTTTTCAAAGTTGTA-ATGCCTCTATTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTG
1 TTTA-TTTTTCAAAGTTATAGA-ACCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTG
* * *
8743370 AGCCTCTGATTATAGGAGCTTTGTTTATTTTTTCAAAGTTGTAATGCCTCTGTTTAGAGAAGCAT
64 AGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTAATGCCTCTATTTAGAAAAGCAT
* * *
8743435 TTATGTTTTTCCAAAGTCGTTGAGCCTCTGTTTAGA-AGAGCCTTGTTTTTTTTTCAAAAGTTGT
129 TTATGTTTTTCCAAAGTCGTTGAGCCTATGTTTAGAGA-AGCCTTATTTATTTTTCAAAAGTTGT
* * * *
8743499 AATACCT-CTGTTTAGAGGAGCATTTATGTTTTTTCAAAGTCGTTGAGCCTTTATTTAGAGAAGC
193 AATACCTCCTCTTTAGAGGAGCATTTATGTTTTTCCAAAGTCGTTGAGCCTCTATTTAGAAAAGC
8743563 CTTG
258 CTTG
* * * * *
8743567 TTTATTTTTCAAAAGTTATTGAACCTCTGTTTAGAGGAGCATTTATGCTTTTCCGAAGTCGTTGA
1 TTTATTTTTC-AAAGTTATAGAACCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTGA
* * * *
8743632 GCTTTTGATTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTAGTGCTTCTATTTAGAAAAGCATT
65 GCCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTAATGCCTCTATTTAGAAAAGCATT
8743697 TATGTTTTTCCAAAGTCGTTGAGCCTATGTTTAGAGAAGCCTTATTTATTTTTCAAAAGTTGTAA
130 TATGTTTTTCCAAAGTCGTTGAGCCTATGTTTAGAGAAGCCTTATTTATTTTTCAAAAGTTGTAA
* * *
8743762 TGCCTCCTCTTTAGAGGAGCATTTATGTTTTTCCAAAGTTGTTGAGCCTCTGTTTAGAAAAGCCT
195 TACCTCCTCTTTAGAGGAGCATTTATGTTTTTCCAAAGTCGTTGAGCCTCTATTTAGAAAAGCCT
8743827 TG
260 TG
* ** *
8743829 TTTATTTTTCAAAGTTGTAGTGCCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTAAG
1 TTTATTTTTCAAAGTTATAGAACCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTGAG
* * * * *
8743894 CCTCTGTTTAGAGGAACATT-TATGTTTTTTCAAAGTTGT
66 CCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGT
8743933 TGAGCCTTTG
Statistics
Matches: 321, Mismatches: 41, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
260 23 0.07
261 231 0.72
262 67 0.21
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (261 bp):
TTTATTTTTCAAAGTTATAGAACCTCTGTTTAGAAGAGCATTTATGTTTTTTCAAAGTCGTTGAG
CCTCTGATTAGAGGAGCTTTGTTTATTTTTTCAAAGTTGTAATGCCTCTATTTAGAAAAGCATTT
ATGTTTTTCCAAAGTCGTTGAGCCTATGTTTAGAGAAGCCTTATTTATTTTTCAAAAGTTGTAAT
ACCTCCTCTTTAGAGGAGCATTTATGTTTTTCCAAAGTCGTTGAGCCTCTATTTAGAAAAGCCTT
G
Found at i:8744993 original size:4 final size:4
Alignment explanation
Indices: 8744986--8745032 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
8744976 TATGTGTTTG
* * * *
8744986 TTTA TTTA TTTA TTT- TTTA TTTA TTTA TGTG TTTG TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
8745033 AGACTATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8745010 original size:19 final size:20
Alignment explanation
Indices: 8744980--8745032 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
8744970 TTTTTTTATG
* *
8744980 TGTTTGTTTATTTATTTATT
1 TGTTTATTTATTTATGTATT
*
8745000 T-TTTATTTATTTATGTGTT
1 TGTTTATTTATTTATGTATT
*
8745019 TGTTTATTTTTTTA
1 TGTTTATTTATTTA
8745033 AGACTATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.75
Consensus pattern (20 bp):
TGTTTATTTATTTATGTATT
Found at i:8745147 original size:59 final size:58
Alignment explanation
Indices: 8745075--8745195 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 58
8745065 ATAAAATATA
* * *
8745075 AAAATTAAAAAAAATATATTTTTGAGAAAAAATTGGAAGTACCAATTTTTCTTAAAAT
1 AAAATTAAAAAAAAAATATTTTTGAGAAAAAATTGAAAGTACCAATTTTCCTTAAAAT
* * * *
8745133 AAAATTATCAAAAAAAATATTTTTTAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAT
1 AAAATTA-AAAAAAAAATATTTTTGAGAAAAAATTGAAAGTACCAATTTTCCTTAAAAT
8745192 AAAA
1 AAAA
8745196 ACTTCCAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 7 0.13
59 48 0.87
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (58 bp):
AAAATTAAAAAAAAAATATTTTTGAGAAAAAATTGAAAGTACCAATTTTCCTTAAAAT
Found at i:8745799 original size:21 final size:20
Alignment explanation
Indices: 8745774--8745823 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
8745764 TCTACTGTTT
8745774 TAATTTTAATAATAATAATAA
1 TAATTTTAATAATAA-AATAA
8745795 TAA-TTTAA-AATAAAATAA
1 TAATTTTAATAATAAAATAA
8745813 TAATTATTAAT
1 TAATT-TTAAT
8745824 TTTATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
20 9 0.35
21 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTTTAATAATAAAATAA
Found at i:8745844 original size:8 final size:8
Alignment explanation
Indices: 8745831--8745861 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8745821 AATTTTATAA
8745831 AAAAAAAC
1 AAAAAAAC
8745839 AAAAAAAC
1 AAAAAAAC
*
8745847 AAAAAAGC
1 AAAAAAAC
8745855 AAAAAAA
1 AAAAAAA
8745862 AAACAGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:8746160 original size:13 final size:13
Alignment explanation
Indices: 8746144--8746176 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8746134 AAAAAAATAG
8746144 AAACACAAAAAAA
1 AAACACAAAAAAA
8746157 AAACA-AAAAAAA
1 AAACACAAAAAAA
8746169 AAAC-CAAA
1 AAACACAAA
8746177 GACAAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAACACAAAAAAA
Found at i:8748967 original size:10 final size:10
Alignment explanation
Indices: 8748954--8748979 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8748944 TGAAAAGAAA
8748954 AAAAAAAGAC
1 AAAAAAAGAC
8748964 AAAAAAAGAC
1 AAAAAAAGAC
8748974 AAAAAA
1 AAAAAA
8748980 CATTTTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAC
Found at i:8753756 original size:1 final size:1
Alignment explanation
Indices: 8753750--8753807 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
8753740 GATGGGGCAT
* * * * ** *
8753750 AAAAAAAAAAAAAACAAAAACAAAACAAAAACAAAAAAAAGGAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8753808 GACATATTCA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:8753774 original size:11 final size:10
Alignment explanation
Indices: 8753750--8753807 Score: 71
Period size: 10 Copynumber: 5.6 Consensus size: 10
8753740 GATGGGGCAT
*
8753750 AAAAAAAAAA
1 AAAAAAAAAC
8753760 AAAACAAAAAC
1 AAAA-AAAAAC
8753771 AAAACAAAAAC
1 AAAA-AAAAAC
**
8753782 AAAAAAAAGG
1 AAAAAAAAAC
8753792 AAAAAAAAAC
1 AAAAAAAAAC
8753802 AAAAAA
1 AAAAAA
8753808 GACATATTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
10 22 0.52
11 20 0.48
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:8755852 original size:123 final size:123
Alignment explanation
Indices: 8755613--8755952 Score: 531
Period size: 123 Copynumber: 2.8 Consensus size: 123
8755603 GGCAAAAGCT
* *
8755613 AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTCATTGCCTTTGATTATGAGGAGCATTCAAAGA
1 AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTTATTGCCTCTGATTATGAGGAGCATTCAAAGA
* **
8755678 TTTTGAGATTTGTAAGACCTCCGGGCATAATTTCTAAAAGCCTCTGTGCACGACTTCC
66 TTTTGAGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGCCTCTACGCACGACTTCC
* *
8755736 AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTTATTGTCTCTAATTATGAGGAGCATTCAAAGA
1 AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTTATTGCCTCTGATTATGAGGAGCATTCAAAGA
* * * *
8755801 TTTTGAGATTTGTAAGACCTCCGGGCATAATCTCTGAAAGTCTTTACGCACGACTTTC
66 TTTTGAGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGCCTCTACGCACGACTTCC
* * * *
8755859 AAGATT-AAAAGATTTTCAA-ATTTTAAAATTTTATTGCCTCTGATTATGAGGAGCATTCAAATA
1 AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTTATTGCCTCTGATTATGAGGAGCATTCAAAGA
8755922 TTTTGAGATTTGTAAGACCTCCGGGCATAAT
66 TTTTGAGATTTGTAAGACCTCCGGGCATAAT
8755953 TTCGATTCTC
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
121 70 0.35
122 13 0.06
123 117 0.58
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (123 bp):
AAGTTTAAAAAGATTTTCAAGTTTTTAAAGTTTTATTGCCTCTGATTATGAGGAGCATTCAAAGA
TTTTGAGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGCCTCTACGCACGACTTCC
Found at i:8756086 original size:109 final size:109
Alignment explanation
Indices: 8755928--8756167 Score: 363
Period size: 109 Copynumber: 2.2 Consensus size: 109
8755918 AATATTTTGA
* * * *
8755928 GATTTGTAAGACCTCCGGGCATAATTTCGATTCTCGATGTTATCCCGATCGATTCTTTATTTTTA
1 GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCACGATCGATTATTTATTTTTA
*
8755993 ACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCTGAGCAT
66 ACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCAT
* * * * * *
8756037 GATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGGTGTTGTCACGATCGATTATTTATTTTTG
1 GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCACGATCGATTATTTATTTTTA
* *
8756102 ACTTACGGTGTTATCCTAGTCAATTCTGTAAGACCTCCGGGCAT
66 ACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCAT
8756146 GATTTCTAAGACCTCCGGGCAT
1 GATTTCTAAGACCTCCGGGCAT
8756168 GATTCTGTAA
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 117 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (109 bp):
GATTTCTAAGACCTCCGGGCATAATTTCGATTCGCGATGTTATCACGATCGATTATTTATTTTTA
ACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCAT
Found at i:8756182 original size:23 final size:22
Alignment explanation
Indices: 8756128--8756240 Score: 163
Period size: 22 Copynumber: 5.0 Consensus size: 22
8756118 TAGTCAATTC
8756128 TGTAAGACCTCCGGGCATGATT
1 TGTAAGACCTCCGGGCATGATT
*
8756150 TCTAAGACCTCCGGGCATGATT
1 TGTAAGACCTCCGGGCATGATT
*
8756172 CTGTAAGACCTCCGGGCATAATTT
1 -TGTAAGACCTCCGGGCATGA-TT
*
8756196 TGTAAGACCTCTGGGCATGATT
1 TGTAAGACCTCCGGGCATGATT
* *
8756218 TTTAAGACCTCCGGGCATAATT
1 TGTAAGACCTCCGGGCATGATT
8756240 T
1 T
8756241 CGATTCGCGG
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
22 43 0.53
23 36 0.44
24 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (22 bp):
TGTAAGACCTCCGGGCATGATT
Found at i:8756188 original size:45 final size:45
Alignment explanation
Indices: 8756124--8756241 Score: 184
Period size: 45 Copynumber: 2.6 Consensus size: 45
8756114 ATCCTAGTCA
*
8756124 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATAATTTCTAAGACCTCCGGGCATG
* *
8756169 ATTCTGTAAGACCTCCGGGCATAATTTTGTAAGACCTCTGGGCATG
1 ATTCTGTAAGACCTCCGGGCATAA-TTTCTAAGACCTCCGGGCATG
*
8756215 ATT-TTTAAGACCTCCGGGCATAATTTC
1 ATTCTGTAAGACCTCCGGGCATAATTTC
8756242 GATTCGCGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
44 3 0.04
45 42 0.63
46 22 0.33
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (45 bp):
ATTCTGTAAGACCTCCGGGCATAATTTCTAAGACCTCCGGGCATG
Found at i:8756324 original size:177 final size:176
Alignment explanation
Indices: 8756014--8756417 Score: 576
Period size: 177 Copynumber: 2.3 Consensus size: 176
8756004 TATCCCAGTC
* * * *
8756014 AATTCTGTAAGACCTCTGAGCATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGGTGTTG
1 AATTCTGTAAGACCTCTGGGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTA
* *
8756079 TCACGATCGATTATTTATTTTTGACTTACGGTGTTATCCTAGTCAATTCTGTAAGACCTCCGGGC
66 TCACGATCGATTATTTATTTTTGACTTACGGTGTTATCCTAGTCAATTCTGTAAAACCTCCAGGC
** *
8756144 ATGATTTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCAT
131 ATGATTTCTAAGACCTCCAAGCATGATT-TCTAAGACCTCCGGGCAT
*
8756191 AATTTTGTAAGACCTCTGGGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTA
1 AATTCTGTAAGACCTCTGGGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTA
* * *
8756256 TCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCTAGTCAATTCTGTAAAACCTCCAGGC
66 TCACGATCGATTATTTATTTTTGACTTACGGTGTTATCCTAGTCAATTCTGTAAAACCTCCAGGC
* * *
8756321 ATGATTTTTAAGACCTCCAAGCATGATTTCTAAGACCTCTGGGTAT
131 ATGATTTCTAAGACCTCCAAGCATGATTTCTAAGACCTCCGGGCAT
* * * * * *
8756367 GATTCTGTAAGACCT-TCAGGCATAATTCTGTAAGACCTTCGGGCATGATTT
1 AATTCTGTAAGACCTCT-GGGCATGATT-TTTAAGACCTCCGGGCATAATTT
8756418 TTAAAACCTC
Statistics
Matches: 202, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
175 1 0.00
176 36 0.18
177 165 0.82
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (176 bp):
AATTCTGTAAGACCTCTGGGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTA
TCACGATCGATTATTTATTTTTGACTTACGGTGTTATCCTAGTCAATTCTGTAAAACCTCCAGGC
ATGATTTCTAAGACCTCCAAGCATGATTTCTAAGACCTCCGGGCAT
Found at i:8756381 original size:23 final size:22
Alignment explanation
Indices: 8756318--8756431 Score: 95
Period size: 23 Copynumber: 5.1 Consensus size: 22
8756308 AAAACCTCCA
* * *
8756318 GGCATGATTTTTAAGACCTCCA
1 GGCATGATTTGTAAGACCTTCG
* *
8756340 AGCATGATTTCTAAGACC-TCTG
1 GGCATGATTTGTAAGACCTTC-G
* *
8756362 GGTATGATTCTGTAAGACCTTCA
1 GGCATGATT-TGTAAGACCTTCG
*
8756385 GGCATAATTCTGTAAGACCTTCG
1 GGCATGATT-TGTAAGACCTTCG
* * *
8756408 GGCATGATTTTTAAAACCTCCG
1 GGCATGATTTGTAAGACCTTCG
8756430 GG
1 GG
8756432 TATAATTTCG
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.01
22 35 0.47
23 36 0.49
24 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (22 bp):
GGCATGATTTGTAAGACCTTCG
Found at i:8756391 original size:199 final size:200
Alignment explanation
Indices: 8756124--8756567 Score: 651
Period size: 199 Copynumber: 2.2 Consensus size: 200
8756114 ATCCTAGTCA
** *
8756124 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGC
1 ATTCTGTAAGACCTCCAAGCATGATTTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCAGGC
* *
8756189 ATAATTTTGTAAGACC-TCTGGGCATGATTTTTAAGACCTCCGGGCATAATTTCGATTCGCGGTG
66 ATAATTCTGTAAGACCTTC-GGGCATGATTTTTAAAACCTCCGGGCATAATTTCGATTCGCGGTG
8756253 TTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATC-CTAGTCAATTCTGTAAAACCTCC
130 TTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCTC-AGTCAATTCTGTAAAACCTCC
8756317 AGGCATG
194 AGGCATG
* * * *
8756324 ATT-TTTAAGACCTCCAAGCATGATTTCTAAGACCTCTGGGTATGATTCTGTAAGACCTTCAGGC
1 ATTCTGTAAGACCTCCAAGCATGATTTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCAGGC
* *
8756388 ATAATTCTGTAAGACCTTCGGGCATGATTTTTAAAACCTCCGGGTATAATTTCGATTCGTGGTGT
66 ATAATTCTGTAAGACCTTCGGGCATGATTTTTAAAACCTCCGGGCATAATTTCGATTCGCGGTGT
* * * ***
8756453 TGTCCCGATCGATTCTTTATTTTTGACTTGCTGTGTTATCTCAGTCAATTCTGTAAGACCTTTGG
131 TATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCTCAGTCAATTCTGTAAAACCTCCAG
8756518 GCATG
196 GCATG
* * * *
8756523 ATTCTGTAAGACCTCCGAGTATAATTCTGTAAGACCTCCGGGCAT
1 ATTCTGTAAGACCTCCAAGCATGATT-TCTAAGACCTCCGGGCAT
8756568 AATTTCGATT
Statistics
Matches: 216, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
199 177 0.82
200 24 0.11
201 15 0.07
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (200 bp):
ATTCTGTAAGACCTCCAAGCATGATTTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCAGGC
ATAATTCTGTAAGACCTTCGGGCATGATTTTTAAAACCTCCGGGCATAATTTCGATTCGCGGTGT
TATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCTCAGTCAATTCTGTAAAACCTCCAG
GCATG
Found at i:8756431 original size:22 final size:22
Alignment explanation
Indices: 8756305--8756428 Score: 113
Period size: 22 Copynumber: 5.5 Consensus size: 22
8756295 TAGTCAATTC
*
8756305 TGTAAAACCTCCAGGCATGATT
1 TGTAAGACCTCCAGGCATGATT
* *
8756327 TTTAAGACCTCCAAGCATGATT
1 TGTAAGACCTCCAGGCATGATT
* ** *
8756349 TCTAAGACCTCTGGGTATGATT
1 TGTAAGACCTCCAGGCATGATT
* *
8756371 CTGTAAGACCTTCAGGCATAATT
1 -TGTAAGACCTCCAGGCATGATT
* *
8756394 CTGTAAGACCTTCGGGCATGATT
1 -TGTAAGACCTCCAGGCATGATT
* *
8756417 TTTAAAACCTCC
1 TGTAAGACCTCC
8756429 GGGTATAATT
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
22 45 0.55
23 37 0.45
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (22 bp):
TGTAAGACCTCCAGGCATGATT
Found at i:8756530 original size:23 final size:23
Alignment explanation
Indices: 8756499--8756571 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
8756489 TATCTCAGTC
** *
8756499 AATTCTGTAAGACCTTTGGGCAT
1 AATTCTGTAAGACCTCCGAGCAT
* *
8756522 GATTCTGTAAGACCTCCGAGTAT
1 AATTCTGTAAGACCTCCGAGCAT
*
8756545 AATTCTGTAAGACCTCCGGGCAT
1 AATTCTGTAAGACCTCCGAGCAT
8756568 AATT
1 AATT
8756572 TCGATTTGCG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (23 bp):
AATTCTGTAAGACCTCCGAGCAT
Found at i:8756605 original size:133 final size:132
Alignment explanation
Indices: 8756368--8756702 Score: 478
Period size: 133 Copynumber: 2.6 Consensus size: 132
8756358 TCTGGGTATG
* * * *
8756368 ATTCTGTAAGACCTTCAGGCATAATTCTGTAAGACCTTCGGGCATGATT-TTTAAAACCTCCGGG
1 ATTCTGTAAGACCTTCGGGCATAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGG
* * * * *
8756432 TATAATTTCGATTCGTGGTGTTGTCCCGATCGATTCTTTATTTTTGACTTGCTGTGTTATCTCAG
66 CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATC-CAG
8756497 TCA
130 TCA
* * * * *
8756500 ATTCTGTAAGACCTTTGGGCATGATTCTGTAAGACCTCCGAGTATAATTCTGTAAGACCTCCGGG
1 ATTCTGTAAGACCTTCGGGCATAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGG
*
8756565 CATAATTTCGATTTGCGGTATTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCAGT
66 CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCAGT
8756630 CA
131 CA
* *
8756632 ATTCTGTAAGACCTTCGGG--TAATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTTCGGG
1 ATTCTGTAAGACCTTCGGGCATAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGG
*
8756695 CATGATTT
66 CATAATTT
8756703 TTAAGACCTT
Statistics
Matches: 179, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
130 45 0.25
132 66 0.37
133 68 0.38
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (132 bp):
ATTCTGTAAGACCTTCGGGCATAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGG
CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCAGT
CA
Found at i:8756685 original size:23 final size:23
Alignment explanation
Indices: 8756632--8756719 Score: 110
Period size: 23 Copynumber: 4.0 Consensus size: 23
8756622 TATCCAGTCA
*
8756632 ATTCTGTAAGACCTTCGGG--TA
1 ATTCTGTAAGACCTTCGGGCATG
* *
8756653 ATTCTCTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTTCGGGCATG
8756676 ATTCTGTAAGACCTTCGGGCATG
1 ATTCTGTAAGACCTTCGGGCATG
* *
8756699 ATT-TTTAAGACCTTCAGGCAT
1 ATTCTGTAAGACCTTCGGGCAT
8756720 AATTTTGGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
21 17 0.29
22 16 0.28
23 25 0.43
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (23 bp):
ATTCTGTAAGACCTTCGGGCATG
Found at i:8756777 original size:153 final size:155
Alignment explanation
Indices: 8756499--8756866 Score: 442
Period size: 153 Copynumber: 2.4 Consensus size: 155
8756489 TATCTCAGTC
* ** * * * * *
8756499 AATTCTGTAAGACCTTTGGGCATGATTCTGTAAGACCTCCGAGTATAATTCTGTAAGACCTCCGG
1 AATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTCAG
** * *
8756564 GCATAATTTCGATTTGCGGTATTATCCCGATCGATTCTTTATTTTTGACTTGCGGTGTTAT-CCA
66 GCATAATTTCGATTCACAGTATTATCCCGATCAATTCTTTATTTTTGACTTGCGGTGTTATCCCA
*
8756628 GTCAATTCTGTAAGACCTTCGGG-T
131 ATCAATTCTGTAAGACCTTCGGGAT
* *
8756652 AATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTTCGGGCATGATT-TTTAAGACCTTCAG
1 AATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTCAG
* * * * *
8756716 GCATAATTTTGGTTCACAGTGTTATCCTGATCAATTTTTTATTTTTTGACTTGCGGTGTTATCCC
66 GCATAATTTCGATTCACAGTATTATCCCGATCAATTCTTTA-TTTTTGACTTGCGGTGTTATCCC
*
8756781 AATCAATTTTGTAAGACCTTCGGGCAT
130 AATCAATTCTGTAAGACCTTCGGG-AT
* * * **
8756808 GATT-TTTAAGATCTCCAAGCA--ATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTT
1 AATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTT
8756867 TGAGCATGAT
Statistics
Matches: 182, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
152 43 0.24
153 88 0.48
154 34 0.19
155 13 0.07
156 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (155 bp):
AATTCTCTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTCAG
GCATAATTTCGATTCACAGTATTATCCCGATCAATTCTTTATTTTTGACTTGCGGTGTTATCCCA
ATCAATTCTGTAAGACCTTCGGGAT
Found at i:8756839 original size:21 final size:22
Alignment explanation
Indices: 8756814--8756889 Score: 66
Period size: 23 Copynumber: 3.5 Consensus size: 22
8756804 GCATGATTTT
*
8756814 TAAGATCTCCAAGCA-ATTCTG
1 TAAGACCTCCAAGCAGATTCTG
**
8756835 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCAAGCA-GATTCTG
***
8756858 TAAGACCTTTGAGCATGATT-TG
1 TAAGACCTCCAAGCA-GATTCTG
8756880 TAAGACCTCC
1 TAAGACCTCC
8756890 GGGTATAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
21 12 0.27
22 10 0.22
23 23 0.51
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCAAGCAGATTCTG
Found at i:8756859 original size:23 final size:22
Alignment explanation
Indices: 8756788--8756892 Score: 106
Period size: 22 Copynumber: 4.8 Consensus size: 22
8756778 CCCAATCAAT
*
8756788 TTTGTAAGACCTTCGGGCATGA
1 TTTGTAAGACCTCCGGGCATGA
* * **
8756810 TTTTTAAGATCTCCAAGCA--A
1 TTTGTAAGACCTCCGGGCATGA
8756830 TTCTGTAAGACCTCCGGGCATGA
1 TT-TGTAAGACCTCCGGGCATGA
** *
8756853 TTCTGTAAGACCTTTGAGCATGA
1 TT-TGTAAGACCTCCGGGCATGA
8756876 TTTGTAAGACCTCCGGG
1 TTTGTAAGACCTCCGGG
8756893 TATAAATTCG
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
20 3 0.05
21 13 0.20
22 26 0.40
23 23 0.35
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (22 bp):
TTTGTAAGACCTCCGGGCATGA
Found at i:8757127 original size:3 final size:3
Alignment explanation
Indices: 8757119--8757158 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
8757109 GTTTTAATTT
*
8757119 TAA TAA TAA TAA TAA TAA TAA T-T TAA -AA TAA -AA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8757159 TATTAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 5 0.16
3 27 0.84
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8757175 original size:24 final size:23
Alignment explanation
Indices: 8757112--8757181 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
8757102 GTCTATTGTT
*
8757112 TTAATTTTAATAATAATAATAATA
1 TTAATTTT-ATAAAAATAATAATA
* * *
8757136 ATAATTTAAAATAAAATAATAATTA
1 TTAATTTTATA-AAAATAATAA-TA
*
8757161 TTAATTTTATAAAAAAAATAA
1 TTAATTTTATAAAAATAATAA
8757182 AAAAATAAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 2 0.06
24 24 0.67
25 10 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TTAATTTTATAAAAATAATAATA
Found at i:8757178 original size:27 final size:24
Alignment explanation
Indices: 8757126--8757189 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 24
8757116 TTTTAATAAT
*
8757126 AATAATAATAATAATTTAAAATAA
1 AATAATAATAATAATTTAAAAAAA
*
8757150 AATAATAATTATTAATTTTATAAAAAA
1 AATAATAA-TAATAA-TTTA-AAAAAA
*
8757177 AATAA-AAAAATAA
1 AATAATAATAATAA
8757190 AAAAGAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
24 8 0.24
25 9 0.27
26 6 0.18
27 10 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
AATAATAATAATAATTTAAAAAAA
Found at i:8757191 original size:17 final size:17
Alignment explanation
Indices: 8757169--8757203 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8757159 TATTAATTTT
*
8757169 ATAAAAAAAATAAAAAA
1 ATAAAAAAAAGAAAAAA
*
8757186 ATAAAAAAGAGAAAAAA
1 ATAAAAAAAAGAAAAAA
8757203 A
1 A
8757204 CAGAAAGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.06, T:0.09
Consensus pattern (17 bp):
ATAAAAAAAAGAAAAAA
Found at i:8757531 original size:25 final size:24
Alignment explanation
Indices: 8757498--8757553 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
8757488 AACACCACAC
* *
8757498 AAACC-AAAAAATGAAAAAAACAG
1 AAACCAAAAAAAAGAAAAAAACAA
*
8757521 AAACACAAAAAAAAGACAAAAACAA
1 AAAC-CAAAAAAAAGAAAAAAACAA
8757546 AAACCAAA
1 AAACCAAA
8757554 GACAAACAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 4 0.14
24 5 0.18
25 19 0.68
ACGTcount: A:0.77, C:0.16, G:0.05, T:0.02
Consensus pattern (24 bp):
AAACCAAAAAAAAGAAAAAAACAA
Found at i:8757543 original size:19 final size:18
Alignment explanation
Indices: 8757511--8757559 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
8757501 CCAAAAAATG
*
8757511 AAAAAA-ACAGAAACACAA
1 AAAAAAGACAAAAACA-AA
8757529 AAAAAAGACAAAAACAAA
1 AAAAAAGACAAAAACAAA
*
8757547 AACCAAAGACAAA
1 AA-AAAAGACAAA
8757560 CAGTCCTCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.78, C:0.16, G:0.06, T:0.00
Consensus pattern (18 bp):
AAAAAAGACAAAAACAAA
Found at i:8766125 original size:19 final size:18
Alignment explanation
Indices: 8766097--8766137 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8766087 AGGTATTTAT
8766097 TTAACAAAAAATTAATTAA
1 TTAACAAAAAA-TAATTAA
* *
8766116 TTAACGAAAAATAATTTA
1 TTAACAAAAAATAATTAA
8766134 TTAA
1 TTAA
8766138 TTAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (18 bp):
TTAACAAAAAATAATTAA
Found at i:8766136 original size:22 final size:22
Alignment explanation
Indices: 8766102--8766151 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
8766092 TTTATTTAAC
*
8766102 AAAA-AATTAATTAATTAACGA
1 AAAATAATTAATTAATTAACAA
* *
8766123 AAAATAATTTATTAATTAATAA
1 AAAATAATTAATTAATTAACAA
8766145 AAAATAA
1 AAAATAA
8766152 GGTCATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATAATTAATTAATTAACAA
Found at i:8766285 original size:18 final size:18
Alignment explanation
Indices: 8766275--8766310 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8766265 AATATTATTA
8766275 TATTAACAAATAATATAT
1 TATTAACAAATAATATAT
*
8766293 TATTAATAAATAATATAT
1 TATTAACAAATAATATAT
8766311 CAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
TATTAACAAATAATATAT
Found at i:8766290 original size:21 final size:19
Alignment explanation
Indices: 8766264--8766308 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
8766254 TTTTACTTAT
*
8766264 AAATATTATTA-TATTAAC
1 AAATAATATTATTATTAAC
*
8766282 AAATAATA-TATTATTAAT
1 AAATAATATTATTATTAAC
8766300 AAATAATAT
1 AAATAATAT
8766309 ATCAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAATAATATTATTATTAAC
Found at i:8766352 original size:15 final size:15
Alignment explanation
Indices: 8766273--8766337 Score: 76
Period size: 16 Copynumber: 4.1 Consensus size: 15
8766263 TAAATATTAT
*
8766273 TATATTAACAAATAATA
1 TATATTAATAAAT-A-A
8766290 TATTATTAATAAATAA
1 TA-TATTAATAAATAA
*
8766306 TATATCAATAAATAA
1 TATATTAATAAATAA
8766321 TATTATTAATAAATAA
1 TA-TATTAATAAATAA
8766337 T
1 T
8766338 TTATAATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
15 14 0.33
16 16 0.37
17 3 0.07
18 10 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (15 bp):
TATATTAATAAATAA
Found at i:8766362 original size:15 final size:16
Alignment explanation
Indices: 8766275--8766345 Score: 85
Period size: 15 Copynumber: 4.5 Consensus size: 16
8766265 AATATTATTA
*
8766275 TATTAACAAATAATATAT
1 TATTAATAAAT-A-ATAT
8766293 TATTAATAAATAATA-
1 TATTAATAAATAATAT
*
8766308 TATCAATAAATAATAT
1 TATTAATAAATAATAT
8766324 TATTAATAAATAAT-T
1 TATTAATAAATAATAT
8766339 TA-TAATA
1 TATTAATA
8766346 TATTAATAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
14 5 0.10
15 17 0.35
16 16 0.33
17 1 0.02
18 10 0.20
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTAATAAATAATAT
Found at i:8766463 original size:20 final size:20
Alignment explanation
Indices: 8766390--8766465 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
8766380 TTATTTTAAG
8766390 TATTTTTT-ATATTAAT-AT
1 TATTTTTTAATATTAATAAT
* *
8766408 AATATTTTAATATTAA-ATAT
1 TATTTTTTAATATTAATA-AT
* *
8766428 TATTATTCAA-A-T-ATAAT
1 TATTTTTTAATATTAATAAT
8766445 TATTTTTTAATATTAATAAT
1 TATTTTTTAATATTAATAAT
8766465 T
1 T
8766466 TAATAATAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
17 11 0.26
18 9 0.21
19 9 0.21
20 14 0.33
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTTTTTAATATTAATAAT
Found at i:8766467 original size:14 final size:14
Alignment explanation
Indices: 8766450--8766488 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
8766440 ATAATTATTT
*
8766450 TTTAATATTAATAA
1 TTTAATATAAATAA
8766464 TTTAATAATAAATAA
1 TTTAAT-ATAAATAA
8766479 TTTCAATATA
1 TTT-AATATA
8766489 TTTTAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 6 0.27
15 13 0.59
16 3 0.14
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (14 bp):
TTTAATATAAATAA
Found at i:8766497 original size:26 final size:25
Alignment explanation
Indices: 8766459--8766521 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 25
8766449 TTTTAATATT
*
8766459 AATAATTTAATAATAAATAATTTCA
1 AATATTTTAATAATAAATAATTTCA
* **
8766484 ATATATTTTAATAATAAATATTTTTT
1 A-ATATTTTAATAATAAATAATTTCA
8766510 AATATTTTAATA
1 AATATTTTAATA
8766522 GTTGTATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 12 0.36
26 21 0.64
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
AATATTTTAATAATAAATAATTTCA
Found at i:8766813 original size:2 final size:2
Alignment explanation
Indices: 8766806--8766838 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8766796 CAAATGACAA
*
8766806 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8766839 AAGAAAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:8767882 original size:18 final size:18
Alignment explanation
Indices: 8767840--8767882 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
8767830 AAAAAATTAG
**
8767840 ATAAATTTTTTTATAATT
1 ATAAATTTTTTTATAAAA
* *
8767858 TTGAATTTTTTTATAAAA
1 ATAAATTTTTTTATAAAA
8767876 ATAAATT
1 ATAAATT
8767883 AAAATATTTA
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATAAATTTTTTTATAAAA
Found at i:8769028 original size:15 final size:16
Alignment explanation
Indices: 8768992--8769032 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
8768982 AATATAAAAT
8768992 ATAAATATTTTAATAGA
1 ATAAATATTTTAATA-A
8769009 ATAAATATTTTAAT-A
1 ATAAATATTTTAATAA
8769024 ATAAATATT
1 ATAAATATT
8769033 ACTATTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.42
17 14 0.58
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
ATAAATATTTTAATAA
Found at i:8769051 original size:39 final size:39
Alignment explanation
Indices: 8768967--8769052 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 39
8768957 ATATGATTTA
*
8768967 ATAATAGATATTTTCAATATAAAATATAAATATTTTAAT
1 ATAATAAATATTTTCAATATAAAATATAAATATTTTAAT
* * * *
8769006 AGAATAAATATTTT-AATA-ATAAATATTACTATTTTGAT
1 ATAATAAATATTTTCAATATA-AAATATAAATATTTTAAT
8769044 ATTAATAAA
1 A-TAATAAA
8769053 AATAATATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 1 0.03
38 20 0.51
39 18 0.46
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (39 bp):
ATAATAAATATTTTCAATATAAAATATAAATATTTTAAT
Found at i:8769177 original size:13 final size:13
Alignment explanation
Indices: 8769159--8769188 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8769149 AGTATTTAAC
*
8769159 TATTAAATATTAT
1 TATTAAATATAAT
8769172 TATTAAATATAAT
1 TATTAAATATAAT
8769185 TATT
1 TATT
8769189 CTTGAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATTAAATATAAT
Found at i:8769234 original size:26 final size:25
Alignment explanation
Indices: 8769203--8769262 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 25
8769193 AATATTAATA
*
8769203 ATTTTAATAAT-AATTAATTTCAAT
1 ATTTTAATAATAAATAAATTTCAAT
*
8769227 ATACTTTAATAATAAATAAATTTTAAT
1 AT--TTTAATAATAAATAAATTTCAAT
8769254 ATTTTAATA
1 ATTTTAATA
8769263 GTTATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 2 0.06
25 7 0.23
26 9 0.29
27 13 0.42
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTTTAATAATAAATAAATTTCAAT
Found at i:8770648 original size:81 final size:81
Alignment explanation
Indices: 8770513--8770719 Score: 396
Period size: 81 Copynumber: 2.6 Consensus size: 81
8770503 ATCTAGATTG
8770513 GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAACTAGTTAACTAAAGTAAGTA
1 GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAACTAGTTAACTAAAGTAAGTA
*
8770578 ATGTAAAATAATTCTA
66 ATGTAAAACAATTCTA
8770594 GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAACTAGTTAACTAAAGTAAGTA
1 GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAACTAGTTAACTAAAGTAAGTA
8770659 ATGTAAAACAATTCTA
66 ATGTAAAACAATTCTA
*
8770675 GACACCAAGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAA
1 GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAA
8770720 TCATACTTTC
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 124 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.24
Consensus pattern (81 bp):
GACACCATGTCAAAGGAAGGACTAGAAGATTATGACCAAATTTAACTAGTTAACTAAAGTAAGTA
ATGTAAAACAATTCTA
Found at i:8778918 original size:19 final size:19
Alignment explanation
Indices: 8778894--8778963 Score: 83
Period size: 19 Copynumber: 3.7 Consensus size: 19
8778884 TATTAAGGTT
8778894 TATATAATTGTTTAGATTA
1 TATATAATTGTTTAGATTA
8778913 TATATAATTGTTTATTG-TT-
1 TATATAATTGTTTA--GATTA
8778932 TATAT-ATTGTTTAGATTA
1 TATATAATTGTTTAGATTA
* *
8778950 TAAATAATTATTTA
1 TATATAATTGTTTA
8778964 TTGTTTGGCT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 12 0.27
19 26 0.59
20 2 0.05
21 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (19 bp):
TATATAATTGTTTAGATTA
Found at i:8778945 original size:37 final size:38
Alignment explanation
Indices: 8778891--8778969 Score: 133
Period size: 37 Copynumber: 2.1 Consensus size: 38
8778881 ACATATTAAG
* *
8778891 GTTTATATAATTGTTTAGATTATATATAATTGTTTATT
1 GTTTATATAATTGTTTAGATTATAAATAATTATTTATT
8778929 GTTTATAT-ATTGTTTAGATTATAAATAATTATTTATT
1 GTTTATATAATTGTTTAGATTATAAATAATTATTTATT
8778966 GTTT
1 GTTT
8778970 GGCTTTTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 31 0.79
38 8 0.21
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (38 bp):
GTTTATATAATTGTTTAGATTATAAATAATTATTTATT
Found at i:8779130 original size:30 final size:30
Alignment explanation
Indices: 8779096--8779168 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
8779086 TTGGCAACAT
8779096 TATAA-GGTTTATATAATTATTTACATTATA
1 TATAATGGTTTATAT-ATTATTTACATTATA
* *
8779126 TATAATTGTTTATATATTGTTTACATTATA
1 TATAATGGTTTATATATTATTTACATTATA
*
8779156 TATAATTGTTTAT
1 TATAATGGTTTAT
8779169 TGTTTATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
30 32 0.80
31 8 0.20
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.55
Consensus pattern (30 bp):
TATAATGGTTTATATATTATTTACATTATA
Found at i:8779165 original size:19 final size:18
Alignment explanation
Indices: 8779105--8779204 Score: 72
Period size: 19 Copynumber: 5.8 Consensus size: 18
8779095 TTATAAGGTT
*
8779105 TATATAATTATTTACATTA
1 TATATAATTGTTTA-ATTA
8779124 TATATAATTG-----TT-
1 TATATAATTGTTTAATTA
8779136 TATAT-ATTGTTTACATTA
1 TATATAATTGTTTA-ATTA
*
8779154 TATATAATTGTTT-ATTG
1 TATATAATTGTTTAATTA
*
8779171 TTTATATATTGTTTATATTA
1 TATATA-ATTGTTTA-ATTA
*
8779191 TAAATAATTGTTTA
1 TATATAATTGTTTA
8779205 TTGTTTGGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 22
0.70 0.07 0.24
Matches are distributed among these distances:
11 4 0.06
12 5 0.08
13 2 0.03
17 10 0.16
18 12 0.19
19 24 0.38
20 7 0.11
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (18 bp):
TATATAATTGTTTAATTA
Found at i:8779171 original size:37 final size:37
Alignment explanation
Indices: 8779130--8779210 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
8779120 ATTATATATA
*
8779130 ATTGTTTATATATTGTTTACATTATATATAATTGTTT
1 ATTGTTTATATATTGTTTACATTATAAATAATTGTTT
*
8779167 ATTGTTTATATATTGTTTATATTATAAATAATTGTTT
1 ATTGTTTATATATTGTTTACATTATAAATAATTGTTT
8779204 ATTGTTT
1 ATTGTTT
8779211 GGCTTTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.30, C:0.01, G:0.09, T:0.60
Consensus pattern (37 bp):
ATTGTTTATATATTGTTTACATTATAAATAATTGTTT
Found at i:8779205 original size:19 final size:19
Alignment explanation
Indices: 8779136--8779205 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
8779126 TATAATTGTT
*
8779136 TATAT-ATTGTTTACATTA
1 TATATAATTGTTTATATTA
*
8779154 TATATAATTGTTTAT-TGTT
1 TATATAATTGTTTATAT-TA
8779173 TATAT-ATTGTTTATATTA
1 TATATAATTGTTTATATTA
*
8779191 TAAATAATTGTTTAT
1 TATATAATTGTTTAT
8779206 TGTTTGGCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
18 20 0.45
19 24 0.55
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (19 bp):
TATATAATTGTTTATATTA
Found at i:8779768 original size:3 final size:3
Alignment explanation
Indices: 8779762--8779788 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8779752 TTGTGAATAT
8779762 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
8779789 CATTAACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8784275 original size:139 final size:139
Alignment explanation
Indices: 8784025--8784304 Score: 506
Period size: 139 Copynumber: 2.0 Consensus size: 139
8784015 CATCTAGTTC
*
8784025 TCAATTACAAGCACCAAATGAAGAACAACATGTACCTATAGATCCAGAAGCTTTACAACATGAGC
1 TCAATTACAAGCACAAAATGAAGAACAACATGTACCTATAGATCCAGAAGCTTTACAACATGAGC
*
8784090 CTCTACAAGAATCTCAAGAACTAATTTCTCAATCTATAAATAATGAAGATTAAGATGAACAAGTT
66 CTCTACAAGAATCTCAAGAACTAATTTCTCAATCTACAAATAATGAAGATTAAGATGAACAAGTT
8784155 AAACATAAT
131 AAACATAAT
* *
8784164 TCAATTGCAAGCACAAAATGAAGAACAACATGTGCCTATAGATCCAGAAGCTTTACAACATGAGC
1 TCAATTACAAGCACAAAATGAAGAACAACATGTACCTATAGATCCAGAAGCTTTACAACATGAGC
* *
8784229 CTCTACAAGAATCTTAAGAACTAATTTCTCAATCTACAAATAATGAAGATTAAGATGAATAAGTT
66 CTCTACAAGAATCTCAAGAACTAATTTCTCAATCTACAAATAATGAAGATTAAGATGAACAAGTT
8784294 AAACATAAT
131 AAACATAAT
8784303 TC
1 TC
8784305 TAGTATAAAA
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 135 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (139 bp):
TCAATTACAAGCACAAAATGAAGAACAACATGTACCTATAGATCCAGAAGCTTTACAACATGAGC
CTCTACAAGAATCTCAAGAACTAATTTCTCAATCTACAAATAATGAAGATTAAGATGAACAAGTT
AAACATAAT
Found at i:8786542 original size:68 final size:68
Alignment explanation
Indices: 8786397--8786523 Score: 200
Period size: 68 Copynumber: 1.9 Consensus size: 68
8786387 GCATTACACT
* * * *
8786397 AATGAATATGATGTTTATAAAATTATTTTTGCTAGTATATAAATGGATGATTACCTTCTGTACAT
1 AATGAATAAGTTGTTTATAAAATTATTTCTACTAGTATATAAATGGATGATTACCTTCTGTACAT
8786462 ATA
66 ATA
* *
8786465 AATGAATAAGTTGTTTATAAAATTATTTCTACTGGTATATGAATGGATGATTACCTTCT
1 AATGAATAAGTTGTTTATAAAATTATTTCTACTAGTATATAAATGGATGATTACCTTCT
8786524 TACCTTTTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 53 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (68 bp):
AATGAATAAGTTGTTTATAAAATTATTTCTACTAGTATATAAATGGATGATTACCTTCTGTACAT
ATA
Found at i:8787498 original size:55 final size:55
Alignment explanation
Indices: 8787353--8787499 Score: 179
Period size: 55 Copynumber: 2.7 Consensus size: 55
8787343 ATCAATAAAA
* * *
8787353 TATA-ATAAAAAAATTAAAACATAAAAGTCTATACTAATAATCTCTAACCGTTGG
1 TATAGATAAAAAAATTAAAACATACAAGTCTATACTGACAATCTCTAACCGTTGG
* * * * * * *
8787407 TATAGATAAGAAAATCAAAGCATACAATTCTATACTGACAGTCTTTAACTGTTGG
1 TATAGATAAAAAAATTAAAACATACAAGTCTATACTGACAATCTCTAACCGTTGG
* *
8787462 TATAGGTAAAAAAATTAAAAAATACAAGTCTATACTGA
1 TATAGATAAAAAAATTAAAACATACAAGTCTATACTGA
8787500 TAGATGCTAA
Statistics
Matches: 76, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
54 4 0.05
55 72 0.95
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (55 bp):
TATAGATAAAAAAATTAAAACATACAAGTCTATACTGACAATCTCTAACCGTTGG
Found at i:8787540 original size:28 final size:29
Alignment explanation
Indices: 8787508--8787563 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
8787498 GATAGATGCT
8787508 AAGTT-TAGATATAGGTAAGAAAAATTAC
1 AAGTTGTAGATATAGGTAAGAAAAATTAC
* *
8787536 AAGTTGTTGGTATAGGTAAGAAAAATTA
1 AAGTTGTAGATATAGGTAAGAAAAATTA
8787564 AAATATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.30
Consensus pattern (29 bp):
AAGTTGTAGATATAGGTAAGAAAAATTAC
Found at i:8789388 original size:60 final size:59
Alignment explanation
Indices: 8789319--8789677 Score: 426
Period size: 60 Copynumber: 6.0 Consensus size: 59
8789309 AAATAAATAA
*
8789319 AAAATTAAAA-TTTCAAGAAAATATATTTTTGATGAAAAGTTGAAAGTATCAATTTTCTTCG
1 AAAA-TAAAATTTTCAA-AAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTT-G
*
8789380 AAAATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTG
1 AAAATAAAATTTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC-TTG
* * *
8789440 AAAATAAAAATTTT-AAAAAATATATTTTTGAGGGAAAGTTGAAAATATCAATTTTTCTTA
1 AAAAT-AAAATTTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTG
**
8789500 AAAATTAAAATTTTC-AAAAA-GCA-TTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAA-TAAAATTTTCAAAAAATATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTT-CTTG
* * * * * *
8789558 AACATAAAATTTTCAAAAAAAACATTTGTAAGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAAATTTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTG
* *
8789618 AAAATAAAATTTTCAAGAAAA-ATATTTTTAAGGAAAAGTTGAAAATATCAATTTTTCTTG
1 AAAATAAAATTTTCAA-AAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTG
8789678 TATAAAAGCA
Statistics
Matches: 265, Mismatches: 19, Indels: 29
0.85 0.06 0.09
Matches are distributed among these distances:
57 17 0.06
58 31 0.12
59 3 0.01
60 179 0.68
61 35 0.13
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (59 bp):
AAAATAAAATTTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTG
Found at i:8789553 original size:178 final size:178
Alignment explanation
Indices: 8789353--8789676 Score: 503
Period size: 178 Copynumber: 1.8 Consensus size: 178
8789343 ATTTTTGATG
* * * * *
8789353 AAAAGTTGAAAGTATCAATTTT-CTTCGAAAATAAAAATTTCAAAAAATATATTTTTGAGGAAAA
1 AAAAGTTGAAAGTATCAATTTTCCTT-GAAAATAAAAATTTCAAAAAAAACATTTGTAAGAAAAA
* *
8789417 GTTGAAAGTATCAA-TTTTCTTTGAAAATAAAAATTTT-AA-AAAATATATTTTTGAGGGAAAGT
65 GTTGAAAGTATCAATTTTTC-TTGAAAAT-AAAATTTTCAAGAAAA-ATATTTTTAAGGAAAAGT
8789479 TGAAAATATCAATTTTTCTTAAAAATTAAAATTTTCAAAAAGCATTTTAGGA
127 TGAAAATATCAATTTTTCTTAAAAATTAAAATTTTCAAAAAGCATTTTAGGA
* *
8789531 AAAAGTTGAAAGTATCAATTTTCCTTGAACATAAAATTTTCAAAAAAAACATTTGTAAGAAAAAG
1 AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAAAAAAACATTTGTAAGAAAAAG
8789596 TTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAGAAAAATATTTTTAAGGAAAAGTTGAA
66 TTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAGAAAAATATTTTTAAGGAAAAGTTGAA
8789661 AATATCAATTTTTCTT
131 AATATCAATTTTTCTT
8789677 GTATAAAAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
177 8 0.06
178 113 0.85
179 12 0.09
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (178 bp):
AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTCAAAAAAAACATTTGTAAGAAAAAG
TTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAGAAAAATATTTTTAAGGAAAAGTTGAA
AATATCAATTTTTCTTAAAAATTAAAATTTTCAAAAAGCATTTTAGGA
Found at i:8789596 original size:118 final size:119
Alignment explanation
Indices: 8789353--8789677 Score: 417
Period size: 118 Copynumber: 2.7 Consensus size: 119
8789343 ATTTTTGATG
* *
8789353 AAAAGTTGAAAGTATCAA-TTTTCTTCGAAAATAAAAATTTCAAAAAATATATTTTTGAGGAAAA
1 AAAAGTTGAAAGTATCAATTTTTCTT-GAAAATAAAATTTTCAAAAAA-ATATTTTTAAGGAAAA
* * * * * *
8789417 GTTGAAAGTATCAATTTTCTTTGAAAATAAAAATTTTAAAAAATATATTTTTGAGG
64 GTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTTAAAAAAAACATTTGTAAGA
* * * **
8789473 GAAAGTTGAAAATATCAATTTTTCTTAAAAATTAAAATTTTC-AAAAAGCA-TTTT-AGGAAAAA
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAA-TAAAATTTTCAAAAAAATATTTTTAAGG-AAAA
*
8789535 GTTGAAAGTATCAATTTTCCTTGAACAT-AAAATTTTCAAAAAAAACATTTGTAAGA
64 GTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTT-AAAAAAAACATTTGTAAGA
8789591 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAGAAAAATATTTTTAAGGAAAAG
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAA-AAAAATATTTTTAAGGAAAAG
* *
8789656 TTGAAAATATCAATTTTTCTTG
65 TTGAAAGTATCAATTTTCCTTG
8789678 TATAAAAGCA
Statistics
Matches: 177, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
117 21 0.12
118 77 0.44
119 6 0.03
120 54 0.31
121 19 0.11
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.36
Consensus pattern (119 bp):
AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAAAAAATATTTTTAAGGAAAAGT
TGAAAGTATCAATTTTCCTTGAAAATAAAAATTTTAAAAAAAACATTTGTAAGA
Found at i:8797622 original size:44 final size:42
Alignment explanation
Indices: 8797511--8797627 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 42
8797501 AAACTCGATG
* * *
8797511 ACTTTTGAAAATGTAAATGGCTCCTATAAGAAAAGGCTTAATA
1 ACTTTTGAAAATTTAAATGGTTCCTATAAGAAAA-GCTTAACA
** *
8797554 ACTTTT-AAAAGTTTAAAAAGTTCCTCTAAGTAGAAA-CTTAACA
1 ACTTTTGAAAA-TTTAAATGGTTCCTATAAG-A-AAAGCTTAACA
*
8797597 ACTTTTGAAAATTTTAAATGGTTCCTTTAAG
1 ACTTTTGAAAA-TTTAAATGGTTCCTATAAG
8797628 CAGAGGTTCG
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 4 0.07
43 32 0.53
44 21 0.35
45 3 0.05
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (42 bp):
ACTTTTGAAAATTTAAATGGTTCCTATAAGAAAAGCTTAACA
Found at i:8797788 original size:51 final size:51
Alignment explanation
Indices: 8797640--8797802 Score: 159
Period size: 51 Copynumber: 3.2 Consensus size: 51
8797630 GAGGTTCGAT
* * * * ** **
8797640 AACTTTAAAAACTCTT-ATCTTAAAAATGGCTTTTCTAAACAAAAACTCAAC
1 AACTTTAAAAA-TTTTCATCTTAAAAAAGACTTATCTAAGTAAAGGCTCAAC
* *
8797691 AACTTTAAAAATTTTCATCTTAAAAAAGCCTTATCTAAGTAAAGGCTCAAT
1 AACTTTAAAAATTTTCATCTTAAAAAAGACTTATCTAAGTAAAGGCTCAAC
* * * * *
8797742 AACTTTAAAAATTCTT-ATTTTGAAAAAGACTTCTCTTAGTAGAGGCTCAAC
1 AACTTTAAAAATT-TTCATCTTAAAAAAGACTTATCTAAGTAAAGGCTCAAC
8797793 AACTTTAAAA
1 AACTTTAAAA
8797803 TCCTCATCTT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 3 0.03
51 89 0.95
52 2 0.02
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (51 bp):
AACTTTAAAAATTTTCATCTTAAAAAAGACTTATCTAAGTAAAGGCTCAAC
Found at i:8808884 original size:6 final size:7
Alignment explanation
Indices: 8808867--8808896 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8808857 GAAATTTATC
*
8808867 TTTTTTG
1 TTTTTTA
8808874 TTTTTTA
1 TTTTTTA
8808881 TTTTTTA
1 TTTTTTA
8808888 TTTTTTA
1 TTTTTTA
8808895 TT
1 TT
8808897 GGTTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:8808904 original size:20 final size:19
Alignment explanation
Indices: 8808881--8808948 Score: 100
Period size: 20 Copynumber: 3.5 Consensus size: 19
8808871 TTGTTTTTTA
**
8808881 TTTTTTATTTTTTATTGGT
1 TTTTTTATTTTAGATTGGT
8808900 TTTTTTATCTTTAGATTGGT
1 TTTTTTAT-TTTAGATTGGT
8808920 TTTTTTATTTCTAGATTGGT
1 TTTTTTATTT-TAGATTGGT
8808940 TTTTTTATT
1 TTTTTTATT
8808949 GAAAATAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
19 10 0.22
20 35 0.78
ACGTcount: A:0.13, C:0.03, G:0.12, T:0.72
Consensus pattern (19 bp):
TTTTTTATTTTAGATTGGT
Found at i:8809923 original size:24 final size:21
Alignment explanation
Indices: 8809879--8809927 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 21
8809869 TTTCCCTCAT
8809879 TTTTATTATTTTTATTAATAA
1 TTTTATTATTTTTATTAATAA
8809900 TTTTAGTTAATTTTATATTAATAA
1 TTTTA-TT-ATTTT-TATTAATAA
8809924 TTTT
1 TTTT
8809928 TAATTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 5 0.20
22 2 0.08
23 5 0.20
24 13 0.52
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTATTATTTTTATTAATAA
Found at i:8809930 original size:21 final size:21
Alignment explanation
Indices: 8809877--8809936 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 21
8809867 TTTTTCCCTC
8809877 ATTTTTATTATTTT-TATTAATA
1 ATTTTTA--ATTTTATATTAATA
8809899 ATTTTAGTTAATTTTATATTAATA
1 A-TTT--TTAATTTTATATTAATA
8809923 ATTTTTAATTTTAT
1 ATTTTTAATTTTAT
8809937 TTTATAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 10 0.29
22 1 0.03
23 11 0.32
24 9 0.26
25 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTTAATTTTATATTAATA
Found at i:8810172 original size:7 final size:6
Alignment explanation
Indices: 8810153--8810201 Score: 53
Period size: 6 Copynumber: 7.3 Consensus size: 6
8810143 AAAAATTAAC
8810153 TTATTT TTATTT TTATTT TTATTTT TTCATTT TTAGTATT ATTATTT TT
1 TTATTT TTATTT TTATTT TTA-TTT TT-ATTT TTA-T-TT -TTATTT TT
8810202 TAAAAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 18 0.47
7 13 0.34
8 4 0.11
9 3 0.08
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:8810184 original size:20 final size:22
Alignment explanation
Indices: 8810156--8810203 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
8810146 AATTAACTTA
* *
8810156 TTTTTATTTTTATTTTTATT-T
1 TTTTTATTTTTAGTATTATTAT
*
8810177 TTTC-ATTTTTAGTATTATTAT
1 TTTTTATTTTTAGTATTATTAT
8810198 TTTTTA
1 TTTTTA
8810204 AAAAAATAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
20 13 0.62
21 7 0.33
22 1 0.05
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (22 bp):
TTTTTATTTTTAGTATTATTAT
Found at i:8811305 original size:12 final size:12
Alignment explanation
Indices: 8811280--8811316 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8811270 TTTCTTCTTT
8811280 TTTTA-TTAAT-
1 TTTTATTTAATA
8811290 TTTTATTTAATA
1 TTTTATTTAATA
*
8811302 TTTTATTTAACA
1 TTTTATTTAATA
8811314 TTT
1 TTT
8811317 AATTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 5 0.21
11 5 0.21
12 14 0.58
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATTTAATA
Found at i:8820537 original size:23 final size:23
Alignment explanation
Indices: 8820511--8820561 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8820501 TTTATCCTTC
*
8820511 TTTTCTTTATTTATTTATTTTGA
1 TTTTCTTTATTTATTAATTTTGA
* * * *
8820534 TTTTATTTTTTTGTTAATTTTTA
1 TTTTCTTTATTTATTAATTTTGA
8820557 TTTTC
1 TTTTC
8820562 AATATTTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (23 bp):
TTTTCTTTATTTATTAATTTTGA
Found at i:8824967 original size:6 final size:6
Alignment explanation
Indices: 8824954--8825002 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
8824944 CAACAACAAA
* * * * *
8824954 ATATAT ATACAT ATATAT ATATAT ATTTAT ATTTAT ATTTAT ATTTAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
8825002 A
1 A
8825003 GTTTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (6 bp):
ATATAT
Found at i:8824985 original size:18 final size:18
Alignment explanation
Indices: 8824954--8825002 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
8824944 CAACAACAAA
**
8824954 ATATATATACATATATAT
1 ATATATATTTATATATAT
*
8824972 ATATATATTTATATTTAT
1 ATATATATTTATATATAT
*
8824990 ATTTATATTTATA
1 ATATATATTTATA
8825003 GTTTTTCAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATATATTTATATATAT
Found at i:8824990 original size:12 final size:12
Alignment explanation
Indices: 8824964--8825002 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8824954 ATATATATAC
* *
8824964 ATATATATATAT
1 ATATTTATATTT
8824976 ATATTTATATTT
1 ATATTTATATTT
8824988 ATATTTATATTT
1 ATATTTATATTT
8825000 ATA
1 ATA
8825003 GTTTTTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATATTTATATTT
Found at i:8829113 original size:17 final size:17
Alignment explanation
Indices: 8829075--8829131 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
8829065 AATTTTCAAA
*
8829075 AAAAATTAAGAAGTTCA-
1 AAAAATTAAGAAATT-AT
8829092 AAAAATCTAA-AACATTAT
1 AAAAAT-TAAGAA-ATTAT
8829110 AAAAATTAAGAAATTAT
1 AAAAATTAAGAAATTAT
8829127 AAAAA
1 AAAAA
8829132 ATTTTTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 22 0.63
18 13 0.37
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (17 bp):
AAAAATTAAGAAATTAT
Found at i:8829132 original size:18 final size:18
Alignment explanation
Indices: 8829074--8829134 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
8829064 AAATTTTCAA
* *
8829074 AAAAAATTAAGAAGTT-C
1 AAAAAATTAAGAAATTAT
8829091 AAAAAATCTAA-AACATTAT
1 AAAAAAT-TAAGAA-ATTAT
8829110 -AAAAATTAAGAAATTAT
1 AAAAAATTAAGAAATTAT
8829127 AAAAAATT
1 AAAAAATT
8829135 TTTAAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 17 0.46
18 20 0.54
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAAAATTAAGAAATTAT
Found at i:8829233 original size:20 final size:19
Alignment explanation
Indices: 8829209--8829352 Score: 103
Period size: 21 Copynumber: 7.3 Consensus size: 19
8829199 AAAATTCAAA
8829209 TAAAAATTTAAAAAAATTC
1 TAAAAATTTAAAAAAATTC
*
8829228 TAAAAATTT--TAAAATTC
1 TAAAAATTTAAAAAAATTC
* ***
8829245 AGAAAAATATTTTCAAAATTAC
1 -TAAAAAT-TTAAAAAAATT-C
*
8829267 TAAAAATTATAAAAGAATTC
1 TAAAAATT-TAAAAAAATTC
* *
8829287 TAAAAATTCTAATAAAATTTT
1 TAAAAATT-TAA-AAAAATTC
**
8829308 TAAAAATTTTCAAAAATTC
1 TAAAAATTTAAAAAAATTC
*
8829327 TAACAAATTTTCAAAAAATTC
1 TAA-AAA-TTTAAAAAAATTC
8829348 TAAAA
1 TAAAA
8829353 TTTGTTAATA
Statistics
Matches: 98, Mismatches: 18, Indels: 17
0.74 0.14 0.13
Matches are distributed among these distances:
17 7 0.07
18 6 0.06
19 20 0.20
20 19 0.19
21 45 0.46
22 1 0.01
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.35
Consensus pattern (19 bp):
TAAAAATTTAAAAAAATTC
Found at i:8829233 original size:31 final size:30
Alignment explanation
Indices: 8829198--8829352 Score: 99
Period size: 31 Copynumber: 5.1 Consensus size: 30
8829188 AAAAAAAATA
8829198 AAAAATTCAAATAAAAATTTAAAAAAATTCT
1 AAAAATTC-AATAAAAATTTAAAAAAATTCT
* * *
8829229 AAAAATT---TTAAAATTCAGAAAAATATTTT
1 AAAAATTCAATAAAAATTTA-AAAAA-ATTCT
* * *
8829258 CAAAATT-ACTAAAAATTATAAAAGAATTCT
1 AAAAATTCAATAAAAATT-TAAAAAAATTCT
** *
8829288 AAAAATTCTAAT-AAAATTTTTAAAAATTTT
1 AAAAATTC-AATAAAAATTTAAAAAAATTCT
*
8829318 CAAAAATTC--TAACAAATTTTCAAAAAATTCT
1 -AAAAATTCAATAA-AAA-TTTAAAAAAATTCT
8829349 AAAA
1 AAAA
8829353 TTTGTTAATA
Statistics
Matches: 96, Mismatches: 17, Indels: 23
0.71 0.12 0.17
Matches are distributed among these distances:
27 8 0.08
28 6 0.06
29 11 0.11
30 25 0.26
31 43 0.45
32 3 0.03
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (30 bp):
AAAAATTCAATAAAAATTTAAAAAAATTCT
Found at i:8829242 original size:39 final size:39
Alignment explanation
Indices: 8829190--8829280 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 39
8829180 GACAACTCAA
* *
8829190 AAAAAATAAAAAATTCA-AATAAAAATTTAAAAAAATT-CT
1 AAAAATTATAAAATTCAGAA-AAAAATTT-AAAAAATTACT
* * **
8829229 AAAAATTTTAAAATTCAGAAAAATATTTTCAAAATTACT
1 AAAAATTATAAAATTCAGAAAAAAATTTAAAAAATTACT
8829268 AAAAATTATAAAA
1 AAAAATTATAAAA
8829281 GAATTCTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
38 6 0.14
39 35 0.81
40 2 0.05
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (39 bp):
AAAAATTATAAAATTCAGAAAAAAATTTAAAAAATTACT
Found at i:8829290 original size:11 final size:10
Alignment explanation
Indices: 8829196--8829352 Score: 76
Period size: 10 Copynumber: 15.5 Consensus size: 10
8829186 TCAAAAAAAA
8829196 TAAAAAATTC
1 TAAAAAATTC
*
8829206 AAATAAAAATT-
1 -TA-AAAAATTC
8829217 TAAAAAAATTC
1 T-AAAAAATTC
8829228 T-AAAAATT-
1 TAAAAAATTC
*
8829236 T-TAAAATTC
1 TAAAAAATTC
*
8829245 -AGAAAAATATT
1 TA-AAAAAT-TC
**
8829256 TTCAAAATTAC
1 TAAAAAATT-C
*
8829267 T-AAAAATTA
1 TAAAAAATTC
8829276 TAAAAGAATTC
1 TAAAA-AATTC
8829287 T-AAAAATTC
1 TAAAAAATTC
*
8829296 TAATAAAATTT
1 TAA-AAAATTC
* *
8829307 TTAAAAATTT
1 TAAAAAATTC
*
8829317 TCAAAAATTC
1 TAAAAAATTC
* *
8829327 TAACAAATTT
1 TAAAAAATTC
8829337 TCAAAAAATTC
1 T-AAAAAATTC
8829348 TAAAA
1 TAAAA
8829353 TTTGTTAATA
Statistics
Matches: 112, Mismatches: 20, Indels: 29
0.70 0.12 0.18
Matches are distributed among these distances:
8 7 0.06
9 14 0.12
10 53 0.47
11 31 0.28
12 7 0.06
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:8829456 original size:20 final size:19
Alignment explanation
Indices: 8829381--8829456 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 19
8829371 AAATTTTTAG
* *
8829381 AAAATTAAAAAACAAATTCT
1 AAAATTCAAAAA-AATTTCT
* *
8829401 AAAATTCTAAAAAAATTACA
1 AAAATTC-AAAAAAATTTCT
* * *
8829421 AAAATTCAAGATAATTTTT
1 AAAATTCAAAAAAATTTCT
8829440 AAAATTCAAAAAGAATT
1 AAAATTCAAAAA-AATT
8829457 AAGGAAACTT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
19 17 0.40
20 21 0.49
21 5 0.12
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAATTCAAAAAAATTTCT
Found at i:8829923 original size:26 final size:23
Alignment explanation
Indices: 8829868--8829929 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 23
8829858 CTAAGAAAAT
*
8829868 TTAATTTTTATAAATTTAATTTT
1 TTAATTTTTATAAATTTAATTTA
*
8829891 TTTATTTTTATAAATTATTAAATTTA
1 TTAATTTTTATAAA-T-TT-AATTTA
8829917 TTAATTTTTATAA
1 TTAATTTTTATAA
8829930 CTTTTTAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 13 0.39
24 1 0.03
25 2 0.06
26 17 0.52
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TTAATTTTTATAAATTTAATTTA
Found at i:8829950 original size:10 final size:10
Alignment explanation
Indices: 8829921--8829964 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
8829911 AATTTATTAA
* *
8829921 TTTTTATAAC
1 TTTTTAGAAT
8829931 TTTTTAGAAT
1 TTTTTAGAAT
8829941 TGTTTT-GAAT
1 T-TTTTAGAAT
8829951 TTTTTAGAAT
1 TTTTTAGAAT
8829961 TTTT
1 TTTT
8829965 AATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 4 0.13
10 22 0.73
11 4 0.13
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:8829968 original size:17 final size:20
Alignment explanation
Indices: 8829931--8829973 Score: 65
Period size: 17 Copynumber: 2.3 Consensus size: 20
8829921 TTTTTATAAC
8829931 TTTTTAGAATTGTTTTGAAT
1 TTTTTAGAATTGTTTTGAAT
8829951 TTTTTAGAA-T-TTTT-AAT
1 TTTTTAGAATTGTTTTGAAT
8829968 TTTTTA
1 TTTTTA
8829974 TAAAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 4 0.17
19 1 0.04
20 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (20 bp):
TTTTTAGAATTGTTTTGAAT
Found at i:8829971 original size:8 final size:8
Alignment explanation
Indices: 8829882--8829973 Score: 58
Period size: 8 Copynumber: 10.5 Consensus size: 8
8829872 TTTTTATAAA
8829882 TTTAATTT
1 TTTAATTT
*
8829890 TTTTATTT
1 TTTAATTT
*
8829898 TTATAAATTA
1 TT-T-AATTT
*
8829908 TTAAATTT
1 TTTAATTT
*
8829916 ATTAATTT
1 TTTAATTT
8829924 TTATAACTTT
1 TT-TAA-TTT
*
8829934 TTAGAATTGT
1 TT-TAATT-T
8829944 TTTGAATTT
1 TTT-AATTT
*
8829953 TTTAGAATT
1 TTTA-ATTT
8829962 TTTAATTT
1 TTTAATTT
8829970 TTTA
1 TTTA
8829974 TAAAATTTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
8 28 0.43
9 17 0.26
10 20 0.31
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (8 bp):
TTTAATTT
Found at i:8830089 original size:11 final size:10
Alignment explanation
Indices: 8830067--8830165 Score: 62
Period size: 10 Copynumber: 9.8 Consensus size: 10
8830057 AATTTCTTAA
8830067 AAAATGTTTTT
1 AAAAT-TTTTT
8830078 AATAATTTTTT
1 AA-AATTTTTT
*
8830089 AAATTTTTTT
1 AAAATTTTTT
*
8830099 AGAAATATTTT
1 A-AAATTTTTT
*
8830110 --AAGTTTTT
1 AAAATTTTTT
8830118 AAAAGTTTTTT
1 AAAA-TTTTTT
* * * *
8830129 -GAAGTTGTC
1 AAAATTTTTT
8830138 AAAATTTTTT
1 AAAATTTTTT
8830148 AGAAA-TTTTT
1 A-AAATTTTTT
8830158 AAAATTTT
1 AAAATTTT
8830166 ATAAGTTTGA
Statistics
Matches: 66, Mismatches: 14, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
8 6 0.09
9 6 0.09
10 27 0.41
11 24 0.36
12 3 0.05
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.55
Consensus pattern (10 bp):
AAAATTTTTT
Found at i:8830133 original size:20 final size:19
Alignment explanation
Indices: 8830072--8830165 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 19
8830062 CTTAAAAAAT
*
8830072 GTTTTTAATAATTTTTTAAA
1 GTTTTTAA-AATTTTTTGAA
* *
8830092 TTTTTTTAGAAATATTTT-AA
1 -GTTTTTA-AAATTTTTTGAA
8830112 GTTTTTAAAAGTTTTTTGAA
1 GTTTTTAAAA-TTTTTTGAA
* *
8830132 GTTGTCAAAATTTTTTAGAA
1 GTTTTTAAAATTTTTT-GAA
*
8830152 ATTTTTAAAATTTT
1 GTTTTTAAAATTTT
8830166 ATAAGTTTGA
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
18 3 0.05
19 17 0.28
20 26 0.43
21 13 0.22
22 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.09, T:0.56
Consensus pattern (19 bp):
GTTTTTAAAATTTTTTGAA
Found at i:8831146 original size:13 final size:13
Alignment explanation
Indices: 8831128--8831152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8831118 CGACGAATGA
8831128 TGAATTTTTTGGT
1 TGAATTTTTTGGT
8831141 TGAATTTTTTGG
1 TGAATTTTTTGG
8831153 CAGGGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (13 bp):
TGAATTTTTTGGT
Found at i:8834606 original size:17 final size:17
Alignment explanation
Indices: 8834581--8834614 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8834571 ATAAATGAAA
*
8834581 ATTTCTTTTTGTTGGAT
1 ATTTATTTTTGTTGGAT
8834598 ATTTATTTTTGTTGGAT
1 ATTTATTTTTGTTGGAT
8834615 CCTTTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.65
Consensus pattern (17 bp):
ATTTATTTTTGTTGGAT
Found at i:8840368 original size:23 final size:23
Alignment explanation
Indices: 8840309--8840371 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
8840299 GGGAGCTGAG
* * *
8840309 GTTTGAAAGGGAAAAGCTACGGGT
1 GTTTGAAA-GGAAAAGCAAAGGGA
*
8840333 GTTTAAAAGGAAAA-CAAAGGGA
1 GTTTGAAAGGAAAAGCAAAGGGA
8840355 GTTTGAAAGCGAAAAGC
1 GTTTGAAAG-GAAAAGC
8840372 TAGGGGTTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 13 0.41
23 11 0.34
24 8 0.25
ACGTcount: A:0.43, C:0.08, G:0.32, T:0.17
Consensus pattern (23 bp):
GTTTGAAAGGAAAAGCAAAGGGA
Found at i:8840376 original size:23 final size:21
Alignment explanation
Indices: 8840308--8840384 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 21
8840298 AGGGAGCTGA
8840308 GGTTTGAAAGGGAAAAGCTACGG
1 GGTTTGAAA-GGAAAAGCTA-GG
* *
8840331 GTGTTTAAAAGGAAAA-CAAAGG
1 G-GTTTGAAAGGAAAAGC-TAGG
8840353 GAGTTTGAAAGCGAAAAGCTAGG
1 G-GTTTGAAAG-GAAAAGCTAGG
8840376 GG-TTGAAAG
1 GGTTTGAAAG
8840385 TAAAGAACCC
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
21 7 0.16
22 13 0.29
23 17 0.38
24 8 0.18
ACGTcount: A:0.40, C:0.06, G:0.35, T:0.18
Consensus pattern (21 bp):
GGTTTGAAAGGAAAAGCTAGG
Found at i:8842527 original size:2 final size:2
Alignment explanation
Indices: 8842515--8842565 Score: 57
Period size: 2 Copynumber: 25.5 Consensus size: 2
8842505 ATTTTTAAGT
* * * * *
8842515 TA TA CA TA TA TA TA TA TA TA TA TG TA TG CA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8842557 TA TA TA TA T
1 TA TA TA TA T
8842566 GTTATCATTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8842771 original size:20 final size:20
Alignment explanation
Indices: 8842719--8842772 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
8842709 TATTATTTTT
8842719 TTTCTAAAAACTTTTAAAATA
1 TTTCTAAAAA-TTTTAAAATA
* *
8842740 TTTCTAACAATTTTAGAATA
1 TTTCTAAAAATTTTAAAATA
8842760 TTT-TATAAAATTT
1 TTTCTA-AAAATTT
8842773 CCTTACCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 18 0.62
21 9 0.31
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTCTAAAAATTTTAAAATA
Found at i:8843080 original size:15 final size:15
Alignment explanation
Indices: 8843060--8843090 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8843050 TTCAACTTTT
8843060 TCCTAAATTGATTTA
1 TCCTAAATTGATTTA
*
8843075 TCCTAAATTTATTTA
1 TCCTAAATTGATTTA
8843090 T
1 T
8843091 ACAATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.52
Consensus pattern (15 bp):
TCCTAAATTGATTTA
Found at i:8843218 original size:9 final size:9
Alignment explanation
Indices: 8843204--8843228 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8843194 TAAAAAAATA
8843204 AAATATACT
1 AAATATACT
8843213 AAATATACT
1 AAATATACT
8843222 AAATATA
1 AAATATA
8843229 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATATACT
Found at i:8844534 original size:15 final size:14
Alignment explanation
Indices: 8844495--8844550 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
8844485 AGGAAAGAAC
*
8844495 AAATAAATAATAAAT
1 AAATAAA-AAAAAAT
*
8844510 -AATAATAAAAAAT
1 AAATAAAAAAAAAT
8844523 CAAATAAAAAAATAAT
1 -AAATAAAAAAA-AAT
8844539 AAATAAAAAAAA
1 AAATAAAAAAAA
8844551 GAAACAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 6 0.17
14 6 0.17
15 20 0.57
16 3 0.09
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAAAAAAT
Found at i:8844559 original size:26 final size:25
Alignment explanation
Indices: 8844492--8844548 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 25
8844482 GGTAGGAAAG
8844492 AACAAATAAATAATAAATAATAATAAAA
1 AACAAAT-AA-AA-AAATAATAATAAAA
8844520 AATCAAATAAAAAAATAATAAATAAAA
1 AA-CAAATAAAAAAATAAT-AATAAAA
8844547 AA
1 AA
8844549 AAGAAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 7 0.26
27 11 0.41
28 4 0.15
29 5 0.19
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (25 bp):
AACAAATAAAAAAATAATAATAAAA
Found at i:8844969 original size:33 final size:34
Alignment explanation
Indices: 8844922--8844985 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
8844912 AAGTGAGTGA
*
8844922 GATTAAACCTCAAGTC-AAAAATGAAATGACCTT
1 GATTAAACCACAAGTCGAAAAATGAAATGACCTT
* *
8844955 GATTGAACCACAAGTCGAAAAATGAAGTGAC
1 GATTAAACCACAAGTCGAAAAATGAAATGAC
8844986 TTAGATCAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 14 0.52
34 13 0.48
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.20
Consensus pattern (34 bp):
GATTAAACCACAAGTCGAAAAATGAAATGACCTT
Found at i:8844977 original size:34 final size:33
Alignment explanation
Indices: 8844922--8845179 Score: 109
Period size: 34 Copynumber: 7.8 Consensus size: 33
8844912 AAGTGAGTGA
*
8844922 GATTAAACCTCAAGTCAAAAATGAAATGACCTT
1 GATTAAACCACAAGTCAAAAATGAAATGACCTT
* *
8844955 GATTGAACCACAAGTCGAAAAATGAAGTGA-CTT
1 GATTAAACCACAAGTC-AAAAATGAAATGACCTT
* * * *
8844988 AGATCAAGCC-GAAGTCAAAAATTGAACTGA-CTAT
1 -GATTAAACCACAAGTCAAAAA-TGAAATGACCT-T
* * * * *
8845022 GACTAAACCATAAGTTAAAAAATGAAGTGATC-T
1 GATTAAACCACAAG-TCAAAAATGAAATGACCTT
* * * * * **
8845055 GAACTAAATC-GATGTCAAAAATGAAATGATCAG
1 G-ATTAAACCACAAGTCAAAAATGAAATGACCTT
* * *
8845088 GACTAAACCAAAAGTCAAAAAATTAAATGA-CTT
1 GATTAAACCACAAGTC-AAAAATGAAATGACCTT
* ** * * * *
8845121 AGACTAAA-CTGAGGTAAAAAATGAAATAACC-A
1 -GATTAAACCACAAGTCAAAAATGAAATGACCTT
* *
8845153 GACTAAACCATAAGTCAAAAATGAAAT
1 GATTAAACCACAAGTCAAAAATGAAAT
8845180 AACTAGGATT
Statistics
Matches: 174, Mismatches: 37, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
31 7 0.04
32 53 0.30
33 52 0.30
34 55 0.32
35 7 0.04
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (33 bp):
GATTAAACCACAAGTCAAAAATGAAATGACCTT
Found at i:8845127 original size:66 final size:65
Alignment explanation
Indices: 8844933--8845177 Score: 237
Period size: 66 Copynumber: 3.7 Consensus size: 65
8844923 ATTAAACCTC
* * * * * *
8844933 AAGTCAAAAATGAAATGACCTTGATTGAACCACAAGTCGAAAAATGAAGTGACTTAGA-TCAAGC
1 AAGTCAAAAATGAAATGACCATGACTAAACCATAAGTCAAAAAATGAAGTGACTTAGACT-AA-A
8844997 CG
64 CG
* * * *
8844999 AAGTCAAAAATTGAACTGACTATGACTAAACCATAAGTTAAAAAATGAAGTGATCTGA-ACTAAA
1 AAGTCAAAAA-TGAAATGACCATGACTAAACCATAAGTCAAAAAATGAAGTGA-CTTAGACTAAA
8845063 TCG
64 -CG
* * * * * *
8845066 ATGTCAAAAATGAAATGATCAGGACTAAACCAAAAGTCAAAAAATTAAATGACTTAGACTAAACT
1 AAGTCAAAAATGAAATGACCATGACTAAACCATAAGTCAAAAAATGAAGTGACTTAGACTAAAC-
8845131 G
65 G
* * *
8845132 AGGTAAAAAATGAAATAACCA-GACTAAACCATAAGTC-AAAAATGAA
1 AAGTCAAAAATGAAATGACCATGACTAAACCATAAGTCAAAAAATGAA
8845178 ATAACTAGGA
Statistics
Matches: 147, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
64 8 0.05
65 19 0.13
66 68 0.46
67 48 0.33
68 4 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (65 bp):
AAGTCAAAAATGAAATGACCATGACTAAACCATAAGTCAAAAAATGAAGTGACTTAGACTAAACG
Found at i:8845141 original size:133 final size:130
Alignment explanation
Indices: 8844935--8845177 Score: 290
Period size: 133 Copynumber: 1.8 Consensus size: 130
8844925 TAAACCTCAA
** * * * * * *
8844935 GTCAAAAATGAAATGACCTTGATTGAACCACAAGTCGAAAAATGAAGTGACTTAGATCAAGCCGA
1 GTCAAAAATGAAATGACCAGGACTAAACCAAAAGTCAAAAAATGAAATGACTTAGATCAAACCGA
* * * *
8845000 AGTCAAAAATTGAACTGACTATGACTAAACCATAAGTTAAAAAATGAAGTGATCTGAACTAAATC
66 AGT-AAAAAATGAAATAACCA-GACTAAACCATAAG-TAAAAAATGAAGTGATCTGAACTAAATC
8845065 GAT
128 GAT
* * *
8845068 GTCAAAAATGAAATGATCAGGACTAAACCAAAAGTCAAAAAATTAAATGACTTAGA-CTAAACTG
1 GTCAAAAATGAAATGACCAGGACTAAACCAAAAGTCAAAAAATGAAATGACTTAGATC-AAACCG
* *
8845132 AGGTAAAAAATGAAATAACCAGACTAAACCATAAGTCAAAAATGAA
65 AAGTAAAAAATGAAATAACCAGACTAAACCATAAGTAAAAAATGAA
8845178 ATAACTAGGA
Statistics
Matches: 92, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
130 10 0.11
131 14 0.15
132 14 0.15
133 54 0.59
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (130 bp):
GTCAAAAATGAAATGACCAGGACTAAACCAAAAGTCAAAAAATGAAATGACTTAGATCAAACCGA
AGTAAAAAATGAAATAACCAGACTAAACCATAAGTAAAAAATGAAGTGATCTGAACTAAATCGAT
Found at i:8845156 original size:31 final size:32
Alignment explanation
Indices: 8845022--8845182 Score: 105
Period size: 32 Copynumber: 4.9 Consensus size: 32
8845012 AACTGACTAT
* * * *
8845022 GACTAAACCATAAGTTAAAAAATGAAGTGATCT
1 GACTAAACCATAAG-TAAAAAATGAAATAACCA
* * * *
8845055 GAACTAAATCGAT--GTCAAAAATGAAATGATCA
1 G-ACTAAA-CCATAAGTAAAAAATGAAATAACCA
* * * *
8845087 GGACTAAACCAAAAGTCAAAAAATTAAATGACTTA
1 -GACTAAACCATAAGT-AAAAAATGAAATAAC-CA
*
8845122 GACTAAA-C-TGAGGTAAAAAATGAAATAACCA
1 GACTAAACCAT-AAGTAAAAAATGAAATAACCA
*
8845153 GACTAAACCATAAGTCAAAAATGAAATAAC
1 GACTAAACCATAAGTAAAAAATGAAATAAC
8845183 TAGGATTGAA
Statistics
Matches: 101, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
31 10 0.10
32 52 0.51
33 10 0.10
34 25 0.25
35 4 0.04
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.20
Consensus pattern (32 bp):
GACTAAACCATAAGTAAAAAATGAAATAACCA
Found at i:8845173 original size:32 final size:32
Alignment explanation
Indices: 8845068--8845182 Score: 108
Period size: 32 Copynumber: 3.5 Consensus size: 32
8845058 CTAAATCGAT
* * *
8845068 GTCAAAAATGAAATGATCAGGACTAAACCAAAA
1 GTCAAAAATGAAATAACCA-GACTAAACCATAA
* * * *
8845101 GTCAAAAAATTAAATGACTTAGACTAAA-C-TGAG
1 GTC-AAAAATGAAATAAC-CAGACTAAACCAT-AA
*
8845134 GTAAAAAATGAAATAACCAGACTAAACCATAA
1 GTCAAAAATGAAATAACCAGACTAAACCATAA
8845166 GTCAAAAATGAAATAAC
1 GTCAAAAATGAAATAAC
8845183 TAGGATTGAA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
31 8 0.12
32 30 0.45
33 8 0.12
34 19 0.29
35 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.13, T:0.18
Consensus pattern (32 bp):
GTCAAAAATGAAATAACCAGACTAAACCATAA
Found at i:8845289 original size:34 final size:32
Alignment explanation
Indices: 8845251--8845345 Score: 75
Period size: 33 Copynumber: 2.8 Consensus size: 32
8845241 TGATCCAAAT
8845251 TGAACCGCAAGTTGAAAAATGAAATGACTAA-GAC
1 TGAACCG-AAGTT-AAAAATGAAATGAC-AATGAC
* * * *
8845285 TGAACTGAAGTCAAAAAATGAAGTGACAATGGC
1 TGAACCGAAGT-TAAAAATGAAATGACAATGAC
* *
8845318 TGAACCATAAGTTAGAAAATTAAATGAC
1 TGAACC-GAAGTTA-AAAATGAAATGAC
8845346 CTAAACTAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
32 2 0.04
33 25 0.52
34 21 0.44
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (32 bp):
TGAACCGAAGTTAAAAATGAAATGACAATGAC
Found at i:8845400 original size:32 final size:33
Alignment explanation
Indices: 8845320--8845409 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 33
8845310 ACAATGGCTG
8845320 AACCATAAGTTAGAAAATTAAATGACCTAAACTA
1 AACCATAAGTTA-AAAATTAAATGACCTAAACTA
* * *
8845354 AA-CA-AAGGTCAAAAA-TAAGTGACC-AAGATTA
1 AACCATAA-GTTAAAAATTAAATGACCTAA-ACTA
*
8845385 AACCATAAGTTAAAAAATGAAATGA
1 AACCATAAGTT-AAAAATTAAATGA
8845410 TCGATACCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
30 2 0.05
31 13 0.30
32 10 0.23
33 12 0.27
34 7 0.16
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.20
Consensus pattern (33 bp):
AACCATAAGTTAAAAATTAAATGACCTAAACTA
Found at i:8845402 original size:65 final size:66
Alignment explanation
Indices: 8845211--8845409 Score: 183
Period size: 67 Copynumber: 3.0 Consensus size: 66
8845201 TAGAAAATTA
* ** * ** *
8845211 ACCTAAAATAAACCGAGGTCGAAAATAAAGTGATCCAA-ATTGAACCGCAAGTTGAAAAATGAAA
1 ACCTAAACTAAACAAAGGTCAAAAATAAAGTGA-CCAAGATTGAACCATAAGTTAAAAAATGAAA
8845275 TG
65 TG
* * * ** * *
8845277 A-CTAAGACTGAACTGAA-GTCAAAAAATGAAGTGA-CAATGGCTGAACCATAAGTTAGAAAATT
1 ACCTAA-ACTAAAC-AAAGGTC-AAAAATAAAGTGACCAA-GATTGAACCATAAGTTAAAAAATG
8845339 AAATG
62 AAATG
*
8845344 ACCTAAACTAAACAAAGGTCAAAAAT-AAGTGACCAAGATTAAACCATAAGTTAAAAAATGAAAT
1 ACCTAAACTAAACAAAGGTCAAAAATAAAGTGACCAAGATTGAACCATAAGTTAAAAAATGAAAT
8845408 G
66 G
8845409 A
1 A
8845410 TCGATACCAA
Statistics
Matches: 105, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
65 38 0.36
66 20 0.19
67 43 0.41
68 4 0.04
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.19
Consensus pattern (66 bp):
ACCTAAACTAAACAAAGGTCAAAAATAAAGTGACCAAGATTGAACCATAAGTTAAAAAATGAAAT
G
Found at i:8846905 original size:18 final size:19
Alignment explanation
Indices: 8846861--8846924 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
8846851 CACTTGTAAT
*
8846861 TTTTTTTATTTCATTATTT-
1 TTTTATTATTTCATT-TTTA
8846880 TGTTTATTA-TTC-TTTTTA
1 T-TTTATTATTTCATTTTTA
8846898 CTTTTATTATTTCATTTTTA
1 -TTTTATTATTTCATTTTTA
8846918 TTTTATT
1 TTTTATT
8846925 TTGTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 3 0.08
18 9 0.23
19 15 0.38
20 12 0.31
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTATTATTTCATTTTTA
Done.