Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 51 of 138
Found at i:10747325 original size:102 final size:102
Alignment explanation
Indices: 10747219--10747486 Score: 292
Period size: 102 Copynumber: 2.6 Consensus size: 102
10747209 TGAAACAAGT
* * * *
10747219 AATTAAATAGCTAATCATGCAATTAACAATGTAAAAGATGGAAATAAATATATAATCATGCAATT
1 AATTAAATAGATAATCATGCAATTAACAATATAAAACATGCAAATAAATATATAATCATGCAATT
* *
10747284 AACAATATCAATCATGCAATCAAATATATAATCATGC
66 AACAATATAAAACATGCAATCAAATATATAATCATGC
* ** *
10747321 AATTAAATATATAATCATGTGATTAACAATATAAAACATGCAAATAAATATATTATCATGCAATT
1 AATTAAATAGATAATCATGCAATTAACAATATAAAACATGCAAATAAATATATAATCATGCAATT
* * **
10747386 AACAATATAAAACATGCAATTAACA-ATATAAAACATAT
66 AACAATATAAAACATGCAATCAA-ATATAT-AATCATGC
* * * * *
10747424 AAATAAATAAATTATCATGCAATT-A-AATATAAAATAATACAAAT-AATAATATAAATCATGCA
1 AATTAAATAGATAATCATGCAATTAACAATATAAAA-CATGCAAATAAAT-ATAT-AATCATGCA
10747486 A
63 A
10747487 ATAAGTATGC
Statistics
Matches: 139, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
101 12 0.09
102 93 0.67
103 34 0.24
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (102 bp):
AATTAAATAGATAATCATGCAATTAACAATATAAAACATGCAAATAAATATATAATCATGCAATT
AACAATATAAAACATGCAATCAAATATATAATCATGC
Found at i:10747328 original size:61 final size:60
Alignment explanation
Indices: 10747263--10747486 Score: 261
Period size: 61 Copynumber: 3.7 Consensus size: 60
10747253 AAGATGGAAA
* * *
10747263 TAAATATATAATCATGCAATTAACAATATCAATCATGCAATCAAATATATAATCATGCAAT
1 TAAATATATAATCATGCAATTAACAATATAAAACATGCAAT-AAATATATTATCATGCAAT
**
10747324 TAAATATATAATCATGTGATTAACAATATAAAACATGCAAATAAATATATTATCATGCAAT
1 TAAATATATAATCATGCAATTAACAATATAAAACATGC-AATAAATATATTATCATGCAAT
* ** *
10747385 TAACA-ATATAAAACATGCAATTAACAATATAAAACATATAAATAAATAAATTATCATGCAAT
1 TAA-ATATAT-AATCATGCAATTAACAATATAAAACAT-GCAATAAATATATTATCATGCAAT
* * * * * *
10747447 TAAATATAAAATAATACAAATAATAATATAAATCATGCAA
1 TAAATATATAATCATGCAATTAACAATATAAAACATGCAA
10747487 ATAAGTATGC
Statistics
Matches: 138, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
60 2 0.01
61 81 0.59
62 55 0.40
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.30
Consensus pattern (60 bp):
TAAATATATAATCATGCAATTAACAATATAAAACATGCAATAAATATATTATCATGCAAT
Found at i:10747402 original size:123 final size:124
Alignment explanation
Indices: 10747265--10747490 Score: 294
Period size: 123 Copynumber: 1.8 Consensus size: 124
10747255 GATGGAAATA
* * * * *
10747265 AATATATAATCATGCAATTAACAATATCAATCAT-GCAATCAAATATATAATCATGCAATTAAAT
1 AATATATAAACATGCAATTAACAATATAAAACATAGAAAT-AAATAAATAATCATGCAATTAAAT
* * *** *
10747329 ATATAATCATGTGATTAACAATATAAAACATGCAAATAAATATATTATCATGCAATTAAC
65 ATAAAATAATACAAATAACAATATAAAACATGCAAATAAATATATTATCATGCAATTAAC
* *
10747389 AATATA-AAACATGCAATTAACAATATAAAACATATAAATAAATAAATTATCATGCAATTAAATA
1 AATATATAAACATGCAATTAACAATATAAAACATAGAAATAAATAAATAATCATGCAATTAAATA
* *
10747453 TAAAATAATACAAATAATAATATAAATCATGCAAATAA
66 TAAAATAATACAAATAACAATATAAAACATGCAAATAA
10747491 GTATGCAATT
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
123 77 0.90
124 9 0.10
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (124 bp):
AATATATAAACATGCAATTAACAATATAAAACATAGAAATAAATAAATAATCATGCAATTAAATA
TAAAATAATACAAATAACAATATAAAACATGCAAATAAATATATTATCATGCAATTAAC
Found at i:10747441 original size:143 final size:143
Alignment explanation
Indices: 10747173--10747486 Score: 330
Period size: 143 Copynumber: 2.2 Consensus size: 143
10747163 TGCAAATAGA
* * * * *
10747173 CATGCAATTAAATATATAATCATGCAATTAACAATGTGAAACAAGTAATTAAATAGCTAATCATG
1 CATGCAATTAAATATATAATCATGCAATTAACAATATAAAACAAGCAAATAAATAGATAATCATG
* * * * * * *
10747238 CAATTAACAATGTAAAAGATGGAAATAAATATATAATCATGCAATTAACAATATCAATCATGCAA
66 CAATTAACAATATAAAACATGCAAATAAATATATAAACATACAAATAACAAAATCAATCATGCAA
10747303 TCAAATATATAAT
131 TCAAATATATAAT
** * * *
10747316 CATGCAATTAAATATATAATCATGTGATTAACAATATAAAACATGCAAATAAATATATTATCATG
1 CATGCAATTAAATATATAATCATGCAATTAACAATATAAAACAAGCAAATAAATAGATAATCATG
* * *
10747381 CAATTAACAATATAAAACATGCAATTAACA-ATATAAAACATATAAATAA-ATAAAT-TATCATG
66 CAATTAACAATATAAAACATGCAAATAA-ATATAT-AAACATACAAATAACA-AAATCAATCATG
* *
10747443 CAATTAAATATAAAAT
128 CAATCAAATATATAAT
* * *
10747459 AATACAAAT-AATAATATAAATCATGCAA
1 CATGCAATTAAAT-ATAT-AATCATGCAA
10747487 ATAAGTATGC
Statistics
Matches: 139, Mismatches: 27, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
142 3 0.02
143 114 0.82
144 22 0.16
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.29
Consensus pattern (143 bp):
CATGCAATTAAATATATAATCATGCAATTAACAATATAAAACAAGCAAATAAATAGATAATCATG
CAATTAACAATATAAAACATGCAAATAAATATATAAACATACAAATAACAAAATCAATCATGCAA
TCAAATATATAAT
Found at i:10747482 original size:41 final size:41
Alignment explanation
Indices: 10747265--10747486 Score: 161
Period size: 41 Copynumber: 5.4 Consensus size: 41
10747255 GATGGAAATA
* * *
10747265 AATATATAATCATGCAATTAACA-ATATCAATCATGC-AATCA-
1 AATATA-AATCATGCAATTAA-ATATA-AAATCATACAAATAAC
* *** *
10747306 AATATATAATCATGCAATTAAATATATAATCATGTGATTAAC
1 AATATA-AATCATGCAATTAAATATAAAATCATACAAATAAC
* * ** * *
10747348 AATATAAAACATGCAAATAAATATATTATCATGCAATTAAC
1 AATATAAATCATGCAATTAAATATAAAATCATACAAATAAC
* *
10747389 AATATAAAACATGCAATTAACAATATAAAA-CATATAAAT-A-
1 AATATAAATCATGCAATT-A-AATATAAAATCATACAAATAAC
* *
10747429 AATA-AATTATCATGCAATTAAATATAAAATAATACAAATAAT
1 AATATAA--ATCATGCAATTAAATATAAAATCATACAAATAAC
10747471 AATATAAATCATGCAA
1 AATATAAATCATGCAA
10747487 ATAAGTATGC
Statistics
Matches: 152, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
39 11 0.07
40 20 0.13
41 95 0.62
42 17 0.11
43 9 0.06
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.30
Consensus pattern (41 bp):
AATATAAATCATGCAATTAAATATAAAATCATACAAATAAC
Found at i:10747606 original size:20 final size:20
Alignment explanation
Indices: 10747535--10747627 Score: 96
Period size: 20 Copynumber: 4.6 Consensus size: 20
10747525 CCACACAAAA
* *
10747535 AAATATGTTGATAATCATGC
1 AAATATATTAATAATCATGC
* * *
10747555 AAATAAATTAACAACCATGC
1 AAATATATTAATAATCATGC
*
10747575 AAACATATTAATAATCATGC
1 AAATATATTAATAATCATGC
* **
10747595 AAATATATTAATAAATTACAC
1 AAATATATTAAT-AATCATGC
10747616 AAATATATTAAT
1 AAATATATTAAT
10747628 CATGTAAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
20 42 0.71
21 17 0.29
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (20 bp):
AAATATATTAATAATCATGC
Found at i:10747645 original size:20 final size:20
Alignment explanation
Indices: 10747620--10747708 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
10747610 TTACACAAAT
*
10747620 ATATTAATCATGTAAATAAA
1 ATATTAATCATGTAAATATA
*
10747640 ATATT-A-GA--T-AA-ATA
1 ATATTAATCATGTAAATATA
*
10747654 A-ATT-ATCATGCAAATATA
1 ATATTAATCATGTAAATATA
*
10747672 ATATTAATCATGCAAATATA
1 ATATTAATCATGTAAATATA
*
10747692 ATATTAGTCATGTAAAT
1 ATATTAATCATGTAAAT
10747709 TCATGCAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
13 4 0.07
14 4 0.07
15 2 0.04
16 1 0.02
17 2 0.04
18 5 0.09
19 4 0.07
20 34 0.61
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.36
Consensus pattern (20 bp):
ATATTAATCATGTAAATATA
Found at i:10747663 original size:32 final size:33
Alignment explanation
Indices: 10747616--10747677 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
10747606 TAAATTACAC
* *
10747616 AAATATATTAATCATGTAAATAAAATATTAGAT
1 AAATAAATTAATCATGCAAATAAAATATTAGAT
*
10747649 AAATAAATT-ATCATGCAAATATAATATTA
1 AAATAAATTAATCATGCAAATAAAATATTA
10747678 ATCATGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 18 0.69
33 8 0.31
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (33 bp):
AAATAAATTAATCATGCAAATAAAATATTAGAT
Found at i:10747708 original size:52 final size:50
Alignment explanation
Indices: 10747616--10747722 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 50
10747606 TAAATTACAC
*
10747616 AAAT-ATATTAATCATGTAAATAAAATATTAGATAAATAAATTATCATGCAA
1 AAATAATATTAATCATGCAAATAAAATATTAGATAAATAAA-T-TCATGCAA
* * **
10747667 ATATAATATTAATCATGCAAATATAATATTAG-TCATGTAAATTCATGCAA
1 AAATAATATTAATCATGCAAATAAAATATTAGAT-AAATAAATTCATGCAA
10747717 AAATAA
1 AAATAA
10747723 ATACCATGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
50 13 0.27
51 5 0.10
52 30 0.62
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (50 bp):
AAATAATATTAATCATGCAAATAAAATATTAGATAAATAAATTCATGCAA
Found at i:10750193 original size:19 final size:19
Alignment explanation
Indices: 10750171--10750209 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
10750161 GTTATTTTAT
*
10750171 AAAAAGAAGCTTATAATTAA
1 AAAAAAAAG-TTATAATTAA
10750191 AAAAAAAAGTTATAATTAA
1 AAAAAAAAGTTATAATTAA
10750210 TTATTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.26
Consensus pattern (19 bp):
AAAAAAAAGTTATAATTAA
Found at i:10751974 original size:31 final size:30
Alignment explanation
Indices: 10751886--10751983 Score: 106
Period size: 31 Copynumber: 3.2 Consensus size: 30
10751876 TCAAACAAGT
* * *
10751886 TCTTAATTTTTAATTTGCATCTAAATTAAAC
1 TCTTAATCTTTAATTTGTATCTAAA-TAAGC
* *
10751917 TCTTAATCATTAATTTGTATCCAAATAAGC
1 TCTTAATCTTTAATTTGTATCTAAATAAGC
* *
10751947 TCTTAAATGTTTAATTTATATCTAAATAAGC
1 TCTT-AATCTTTAATTTGTATCTAAATAAGC
*
10751978 CCTTAA
1 TCTTAA
10751984 CATAAATAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
30 10 0.18
31 46 0.82
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (30 bp):
TCTTAATCTTTAATTTGTATCTAAATAAGC
Found at i:10752049 original size:30 final size:30
Alignment explanation
Indices: 10752015--10752080 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
10752005 AAATAAGAGT
*
10752015 TTATTTGAATACAAATAAAACTATAAGAAC
1 TTATTTGAATACAAAAAAAACTATAAGAAC
* * * *
10752045 TTATTTGGATATAAAAAAAAGTATAAGGAC
1 TTATTTGAATACAAAAAAAACTATAAGAAC
10752075 TTATTT
1 TTATTT
10752081 AAGAAAAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (30 bp):
TTATTTGAATACAAAAAAAACTATAAGAAC
Found at i:10754192 original size:16 final size:16
Alignment explanation
Indices: 10754171--10754202 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10754161 GATTAAGTCG
10754171 TAACACTATTGCATTA
1 TAACACTATTGCATTA
*
10754187 TAACACTATTGGATTA
1 TAACACTATTGCATTA
10754203 ATTCATAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (16 bp):
TAACACTATTGCATTA
Found at i:10754387 original size:2 final size:2
Alignment explanation
Indices: 10754380--10754410 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10754370 TCAATGCATC
10754380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10754411 GGAAGCGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10759429 original size:21 final size:21
Alignment explanation
Indices: 10759405--10759449 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
10759395 GAGAAAGAGA
*
10759405 AAGAAAAGGCACAGAGGGTTT
1 AAGAAAAGGCAAAGAGGGTTT
10759426 AAGAAAAGGCAAAGAGGGTTT
1 AAGAAAAGGCAAAGAGGGTTT
10759447 AAG
1 AAG
10759450 GGAAGAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.33, T:0.13
Consensus pattern (21 bp):
AAGAAAAGGCAAAGAGGGTTT
Found at i:10760035 original size:23 final size:23
Alignment explanation
Indices: 10759979--10760041 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
10759969 GACAAATGAC
10759979 ATTTTTATCATC-AA--ATG-AT
1 ATTTTTATCATCAAACGATGTAT
* * *
10759998 ACTTTCATTATCAAACGATGTAT
1 ATTTTTATCATCAAACGATGTAT
10760021 ATTTTTATCATCAAACGATGT
1 ATTTTTATCATCAAACGATGT
10760042 CTTTATTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 9 0.26
20 2 0.06
22 3 0.09
23 20 0.59
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (23 bp):
ATTTTTATCATCAAACGATGTAT
Found at i:10761378 original size:30 final size:31
Alignment explanation
Indices: 10761321--10761390 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
10761311 TCATCTAAAC
* *
10761321 AAGCCCTTCAACTTTTAATTTTTTATTATTA
1 AAGCCCTTCAACTTTTAATTTTCTATTATCA
**
10761352 AAGCCCTTTTACTTTT-ATTTTCTATTATCA
1 AAGCCCTTCAACTTTTAATTTTCTATTATCA
*
10761382 AAGTCCTTC
1 AAGCCCTTC
10761391 TATTCTTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 19 0.58
31 14 0.42
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.50
Consensus pattern (31 bp):
AAGCCCTTCAACTTTTAATTTTCTATTATCA
Found at i:10762689 original size:13 final size:13
Alignment explanation
Indices: 10762647--10762690 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
10762637 CTTCGATAAT
10762647 AATTAATAAAAAA
1 AATTAATAAAAAA
**
10762660 AATGTATATAAGTAA
1 AAT-TA-ATAAAAAA
10762675 AATTAATAAAAAA
1 AATTAATAAAAAA
10762688 AAT
1 AAT
10762691 ATAAATTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 12 0.48
14 4 0.16
15 9 0.36
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (13 bp):
AATTAATAAAAAA
Found at i:10762864 original size:29 final size:30
Alignment explanation
Indices: 10762832--10762889 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
10762822 ATATTTTTTA
10762832 TTAATAAAAAAG-AATATCTATATATAAAC
1 TTAATAAAAAAGAAATATCTATATATAAAC
* * *
10762861 TTAATAAAAAGGAAATATTTATATTTAAA
1 TTAATAAAAAAGAAATATCTATATATAAA
10762890 TGGAAATTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.34
Consensus pattern (30 bp):
TTAATAAAAAAGAAATATCTATATATAAAC
Found at i:10763852 original size:7 final size:7
Alignment explanation
Indices: 10763825--10763866 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
10763815 TTAATGACAT
10763825 TTAATTA
1 TTAATTA
*
10763832 -TAAATA
1 TTAATTA
10763838 TATAATTA
1 T-TAATTA
10763846 TTAATTA
1 TTAATTA
10763853 TTAATTA
1 TTAATTA
10763860 TTAATTA
1 TTAATTA
10763867 GTAACTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 5 0.16
7 20 0.65
8 6 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TTAATTA
Found at i:10764112 original size:25 final size:25
Alignment explanation
Indices: 10764065--10764111 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10764055 TTAAAAAATA
10764065 AAAATAAAAAATACCTATATTTTCT
1 AAAATAAAAAATACCTATATTTTCT
* *
10764090 AAAATAAACACTACCTA-ATTTT
1 AAAATAAAAAATACCTATATTTT
10764112 TTTTTTACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAATAAAAAATACCTATATTTTCT
Found at i:10770600 original size:124 final size:124
Alignment explanation
Indices: 10770406--10770654 Score: 489
Period size: 124 Copynumber: 2.0 Consensus size: 124
10770396 ATCCTTTAAG
10770406 TTTGAAAGATAATTTTCTCATTTGAAAATCATTATGTGAGAGTTTAGAAAAATATCAATCATGAA
1 TTTGAAAGATAATTTTCTCATTTGAAAATCATTATGTGAGAGTTTAGAAAAATATCAATCATGAA
*
10770471 TTGTCCATATAATTTATATATGATGTTGGAAAAATCATGGCATGTGAGAATAAAAAGCC
66 TTGTCCATATAATTTATATATGATGTTGGAAAAATCATGACATGTGAGAATAAAAAGCC
10770530 TTTGAAAGATAATTTTCTCATTTGAAAATCATTATGTGAGAGTTTAGAAAAATATCAATCATGAA
1 TTTGAAAGATAATTTTCTCATTTGAAAATCATTATGTGAGAGTTTAGAAAAATATCAATCATGAA
10770595 TTGTCCATATAATTTATATATGATGTTGGAAAAATCATGACATGTGAGAATAAAAAGCC
66 TTGTCCATATAATTTATATATGATGTTGGAAAAATCATGACATGTGAGAATAAAAAGCC
10770654 T
1 T
10770655 CATAATTTGT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.35
Consensus pattern (124 bp):
TTTGAAAGATAATTTTCTCATTTGAAAATCATTATGTGAGAGTTTAGAAAAATATCAATCATGAA
TTGTCCATATAATTTATATATGATGTTGGAAAAATCATGACATGTGAGAATAAAAAGCC
Found at i:10770724 original size:16 final size:16
Alignment explanation
Indices: 10770705--10770749 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
10770695 AAAAATTCAA
10770705 AAAAATTAAAAATATG-
1 AAAAATTAAAAA-ATGC
*
10770721 AAAAGTTAAAAAATGC
1 AAAAATTAAAAAATGC
*
10770737 AAAAAATAAAAAA
1 AAAAATTAAAAAA
10770750 CATAAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 3 0.12
16 22 0.88
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (16 bp):
AAAAATTAAAAAATGC
Found at i:10770797 original size:19 final size:19
Alignment explanation
Indices: 10770775--10770815 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10770765 TTTTAATTCA
*
10770775 AAATT-AAAAAAAGAAAGAG
1 AAATTCAAAAAAA-AAAAAG
10770794 AAATTCAAAAAAAAAAAAG
1 AAATTCAAAAAAAAAAAAG
10770813 AAA
1 AAA
10770816 GGACCAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (19 bp):
AAATTCAAAAAAAAAAAAG
Found at i:10779208 original size:3 final size:3
Alignment explanation
Indices: 10779177--10779308 Score: 71
Period size: 3 Copynumber: 43.3 Consensus size: 3
10779167 TAGCTAGGGA
* *
10779177 TAT TAT TACT T-T TAT TAG TA- TAC TAT TAT TAT ATAT TAT ATAT TA-
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT
* *
10779222 TAT TAT ATAC TA- TAGT TAT TA- TAGG TAT TAT TAT TAT TAT TA- TAT
1 TAT TAT -TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* **
10779267 TAT ATAT TA- TAT TAT ATAT TAT ATAC TAT GGT TAT TAT TAT T
1 TAT -TAT TAT TAT TAT -TAT TAT -TAT TAT TAT TAT TAT TAT T
10779309 TATTTATGTT
Statistics
Matches: 103, Mismatches: 10, Indels: 32
0.71 0.07 0.22
Matches are distributed among these distances:
2 14 0.14
3 67 0.65
4 22 0.21
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:10779225 original size:12 final size:12
Alignment explanation
Indices: 10779200--10779290 Score: 98
Period size: 12 Copynumber: 7.2 Consensus size: 12
10779190 ATTAGTATAC
10779200 TATTAT-TA-TA
1 TATTATATATTA
10779210 TATTATATATTA
1 TATTATATATTA
10779222 TATTATATACTATA
1 TATTATATA-T-TA
10779236 GTTATTATAGGTATTA
1 --TATTATA--TATTA
10779252 TTATTAT-TATTA
1 -TATTATATATTA
10779264 TATTATATATTA
1 TATTATATATTA
10779276 TATTATATATTA
1 TATTATATATTA
10779288 TAT
1 TAT
10779291 ACTATGGTTA
Statistics
Matches: 72, Mismatches: 0, Indels: 16
0.82 0.00 0.18
Matches are distributed among these distances:
10 6 0.08
11 8 0.11
12 36 0.50
13 1 0.01
14 2 0.03
15 7 0.10
16 9 0.12
17 1 0.01
18 2 0.03
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.57
Consensus pattern (12 bp):
TATTATATATTA
Found at i:10779307 original size:19 final size:19
Alignment explanation
Indices: 10779189--10779295 Score: 91
Period size: 19 Copynumber: 5.7 Consensus size: 19
10779179 TTATTACTTT
10779189 TATTAGTATACTATTATTATA
1 TATTA-TATACTA-TATTATA
*
10779210 TATTATATATTATATTATA
1 TATTATATACTATATTATA
* *
10779229 TA--CTATAGT-TATTATA
1 TATTATATACTATATTATA
10779245 GGTATTAT-TA-T-TATTATTA
1 --TATTATATACTATATTA-TA
*
10779264 TATTATATATTATATTATA
1 TATTATATACTATATTATA
10779283 TATTATATACTAT
1 TATTATATACTAT
10779296 GGTTATTATT
Statistics
Matches: 73, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
16 7 0.10
17 11 0.15
18 10 0.14
19 28 0.38
20 12 0.16
21 5 0.07
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (19 bp):
TATTATATACTATATTATA
Found at i:10779334 original size:5 final size:5
Alignment explanation
Indices: 10779324--10779352 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
10779314 ATGTTCCTTT
10779324 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
10779353 GAATTTGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:10780231 original size:16 final size:15
Alignment explanation
Indices: 10780207--10780241 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
10780197 TTTAAACCCA
*
10780207 TTTTATTTTTTATTT
1 TTTTATTTTCTATTT
10780222 TTTTACTTTTCTATTT
1 TTTTA-TTTTCTATTT
10780238 TTTT
1 TTTT
10780242 TAAAAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTCTATTT
Found at i:10780333 original size:27 final size:27
Alignment explanation
Indices: 10780303--10780354 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
10780293 AAATGATTCA
10780303 ATAAAAAAAATCTTTTCAAATAAAAAT
1 ATAAAAAAAATCTTTTCAAATAAAAAT
* *
10780330 ATAAAATACATCTTTTCAAATAAAA
1 ATAAAAAAAATCTTTTCAAATAAAA
10780355 GTTTTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (27 bp):
ATAAAAAAAATCTTTTCAAATAAAAAT
Found at i:10785147 original size:16 final size:16
Alignment explanation
Indices: 10785126--10785158 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10785116 GAGAACCATG
10785126 AATAAGGGAAAAGCTT
1 AATAAGGGAAAAGCTT
10785142 AATAAGGGAAAAGCTT
1 AATAAGGGAAAAGCTT
10785158 A
1 A
10785159 CTTTTGATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.24, T:0.18
Consensus pattern (16 bp):
AATAAGGGAAAAGCTT
Found at i:10787362 original size:14 final size:14
Alignment explanation
Indices: 10787343--10787380 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
10787333 ATGCATTTTG
10787343 TCCATTCATTTTAT
1 TCCATTCATTTTAT
10787357 TCCATTCATTTTAT
1 TCCATTCATTTTAT
10787371 TCCATTCATT
1 TCCATTCATT
10787381 ATCCCATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (14 bp):
TCCATTCATTTTAT
Found at i:10789158 original size:2 final size:2
Alignment explanation
Indices: 10789118--10789146 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10789108 GCTCTTTCTT
10789118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10789147 TTACGTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10789193 original size:12 final size:12
Alignment explanation
Indices: 10789165--10789210 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
10789155 ATATTTTAAA
*
10789165 TATTTTTATATTT
1 TATTTTTATA-TG
10789178 TATTTTTATATG
1 TATTTTTATATG
10789190 TATTTTTATATG
1 TATTTTTATATG
10789202 --TTTTTATAT
1 TATTTTTATAT
10789211 TTTATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 9 0.28
12 13 0.41
13 10 0.31
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (12 bp):
TATTTTTATATG
Found at i:10789227 original size:12 final size:12
Alignment explanation
Indices: 10789124--10789200 Score: 61
Period size: 12 Copynumber: 6.4 Consensus size: 12
10789114 TCTTTATATA
* *
10789124 TATATATATATA
1 TATATATATTTT
*
10789136 TATATATATATT
1 TATATATATTTT
10789148 TACGTATATA-TTT
1 TA--TATATATTTT
10789161 TA-A-ATATTTT
1 TATATATATTTT
*
10789171 TATATTTTATTTT
1 TATA-TATATTTT
*
10789184 TATATGTATTTT
1 TATATATATTTT
10789196 TATAT
1 TATAT
10789201 GTTTTTATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
9 3 0.05
10 6 0.11
11 1 0.02
12 25 0.45
13 14 0.25
14 6 0.11
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (12 bp):
TATATATATTTT
Found at i:10796221 original size:127 final size:127
Alignment explanation
Indices: 10796047--10796294 Score: 297
Period size: 127 Copynumber: 2.0 Consensus size: 127
10796037 TTTCGATAGA
* * ***
10796047 AAAATGCCCTTAATAATTCATACAAACAATATGGAATGGATTATTGAAGGCA-ATTTTGGTTAAA
1 AAAACGCCCTTAATAATCCATACAAACAATATGGAATGGATTATTGAAGGCATATTTTGCCCAAA
* * *
10796111 AGCGCCTTCAATAATCCATTCAATTAATTTTTA-GTTGGTATTATTAAAGGTGGTTTTTTTTTT
66 A-CGCCTTCAATAATCCATACAATAAATTTTTAGGTTGG-ATTATTAAAGGTGATTTTTTTTTT
* * *
10796174 AAAACGCCTTTAATAATCCATACAAA-AA-AGTGGAAATGGATTCTTGAAGGCATGTTTTGCCCA
1 AAAACGCCCTTAATAATCCATACAAACAATA-TGG-AATGGATTATTGAAGGCATATTTTGCCCA
* * * *
10796237 AAATGCCTTTAATATTCCATACAATAAATTTTTAGGTTGGATTATTGAAGGTGATTTT
64 AAACGCCTTCAATAATCCATACAATAAATTTTTAGGTTGGATTATTAAAGGTGATTTT
10796295 GGTTAAAAAT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
125 1 0.01
126 5 0.05
127 82 0.80
128 14 0.14
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (127 bp):
AAAACGCCCTTAATAATCCATACAAACAATATGGAATGGATTATTGAAGGCATATTTTGCCCAAA
ACGCCTTCAATAATCCATACAATAAATTTTTAGGTTGGATTATTAAAGGTGATTTTTTTTTT
Found at i:10796305 original size:64 final size:63
Alignment explanation
Indices: 10796083--10796316 Score: 177
Period size: 64 Copynumber: 3.7 Consensus size: 63
10796073 CAATATGGAA
** * * *
10796083 TGGATTATTGAAGGCAATTTTGGTTAAAAGCGCCTTCAATAATCCATTCAATTAATTTTTAGT
1 TGGATTATTGAAGGTGATTTTGGTTAAAAACGCCTTCAATAATCCATACAATAAATTTTTAGT
* * ** * * ** ** **
10796146 TGGTATTATTAAAGGTGGTTTTTTTTTTAAAACGCCTTTAATAATCCATACAA-AAAAGTGGAAA
1 TGG-ATTATTGAAGGT-GATTTTGGTTAAAAACGCCTTCAATAATCCATACAATAAATTTTTAGT
* *** * * *
10796210 TGGATTCTTGAAGGCATG-TTTT-GCCCAAAATGCCTTTAATATTCCATACAATAAATTTTTAGG
1 TGGATTATTGAAGG--TGATTTTGGTTAAAAACGCCTTCAATAATCCATACAATAAATTTTTA-G
10796273 T
63 T
*
10796274 TGGATTATTGAAGGTGATTTTGGTTAAAAATGCCTTCAATAAT
1 TGGATTATTGAAGGTGATTTTGGTTAAAAACGCCTTCAATAAT
10796317 ATTTTGTTAG
Statistics
Matches: 126, Mismatches: 37, Indels: 15
0.71 0.21 0.08
Matches are distributed among these distances:
62 25 0.20
63 25 0.20
64 47 0.37
65 29 0.23
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.39
Consensus pattern (63 bp):
TGGATTATTGAAGGTGATTTTGGTTAAAAACGCCTTCAATAATCCATACAATAAATTTTTAGT
Found at i:10800752 original size:186 final size:187
Alignment explanation
Indices: 10800435--10801317 Score: 928
Period size: 186 Copynumber: 4.8 Consensus size: 187
10800425 CCTTTAACAT
* *
10800435 TATTAAAGGTGTTTTAT-ACTAAAAGATGCCTTTAATAATCTCAAAAATTTTTAAAA-AGAAATT
1 TATTAAAGGTGTTTT-TCACTAGAAGATACCTTTAATAATCTCAAAAATTTTTAAAAGA-AAATT
* * * * *
10800498 ATTGAAGATATTT-TT-TGAGAACAAACGCCTTCAATAATTATGTACATAAATTAAAAGGAATCA
64 ATTGAAGGTGTTTGTTCTCA-AA-AAACACCTTCAATAATTATGTACATAAATTAAAAGGAATTA
* * *
10800561 GTGAAGGCATTTTTCTAGAAT-AATCGCCTTCACTAACCGTCTTAAATTTTGAGTGGTGGAA
127 GTGAAGGCATTTTTCTAGAATAAAT-GCCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
* * *
10800622 TATTAAAGGTGTTTTTCACTGGGAA-ATACCTTTAATAATCCCAAAAA-TCTTAAAAGAAAATTA
1 TATTAAAGGTGTTTTTCACT-AGAAGATACCTTTAATAATCTCAAAAATTTTTAAAAGAAAATTA
* *
10800685 TTGAAGGTGTTTATTCTCAAAAAATACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTG
65 TTGAAGGTGTTTGTTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTG
* * * *
10800750 AAGGCATTTTTCTTGAATAAACGCCTTTACTAACCATCTTAAAATTTGAGTAGTGAAA
130 AAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
* **
10800808 TATTGAAA-GTGTTTTTCACTATAAGACGCCTTTAATAATCTCAAAAATTTTTTAAAA-AAAATT
1 TATT-AAAGGTGTTTTTCACTAGAAGATACCTTTAATAATCTCAAAAA-TTTTTAAAAGAAAATT
* * * * ** * *
10800871 ATTGAATGCGTTTGTTCTAAAAAAACGCCTTCAATAATTATGTACA-AAATTTAAAAATAGTTAT
64 ATTGAAGGTGTTTGTTCTCAAAAAACACCTTCAATAATTATGTACATAAA-TTAAAAGGAATTAG
* ** * * ** * *
10800935 TAAAGGTTTTTTTTTGGAATAAATGCCTTCACTAATTATCTTAAAATTTGAGTACTGGTA
128 TGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
* * *
10800995 TATT-GAGGTGTTTTTCACTAGAAGATACATTTAATAATCTAAAAAATTTTTAAAATG-AAATTA
1 TATTAAAGGTGTTTTTCACTAGAAGATACCTTTAATAATCTCAAAAATTTTTAAAA-GAAAATTA
* * * * * * * *
10801058 TTAAAGGCGTTTGTTCTTAAAAAACACCTTTAATAATTATGTACATAAATTAAATGGAATCAATA
65 TTGAAGGTGTTTGTTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTG
** * * * * * *
10801123 AAGGTGTTTTTCTACAATAAATACCTTCACTAACCGTTTTAAAATTTGAATAATGGAA
130 AAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
** * * * * *
10801181 TATTAAAGGCATTTTTCACTGGAAAATGCCTTTAATAATC-CAAAAAATTATAAAAGAAAATTAT
1 TATTAAAGGTGTTTTTCACTAGAAGATACCTTTAATAATCTCAAAAATTTTTAAAAGAAAATTAT
10801245 TGAAGGTGTTTGTTCTC---AAA-A-----AATAATTATGTACATAAATTAAAAGGAATTAGTGA
66 TGAAGGTGTTTGTTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTGA
*
10801301 AGGCATTTTTTTAGAAT
131 AGGCATTTTTCTAGAAT
10801318 TTGAGTAGTG
Statistics
Matches: 583, Mismatches: 96, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
177 44 0.08
182 1 0.00
183 3 0.01
185 13 0.02
186 324 0.56
187 187 0.32
188 11 0.02
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (187 bp):
TATTAAAGGTGTTTTTCACTAGAAGATACCTTTAATAATCTCAAAAATTTTTAAAAGAAAATTAT
TGAAGGTGTTTGTTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTGA
AGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGTAGTGGAA
Found at i:10801135 original size:373 final size:369
Alignment explanation
Indices: 10800435--10801317 Score: 922
Period size: 373 Copynumber: 2.4 Consensus size: 369
10800425 CCTTTAACAT
10800435 TATTAAAGGTGTTTTAT-ACTAAAAGATGCCTTTAATAATCTCAAAAATTTTTAAAAAGAAATTA
1 TATTAAA-GTGTTTT-TCACTAAAAGATGCCTTTAATAATCTCAAAAATTTTTAAAAA-AAATTA
* * * *
10800499 TTGAAGATATT-TTTTGAGAACAAACGCCTTCAATAATTATGTACATAAATTAAAAGGAATCAGT
63 TTGAAGGT-TTGTTCT-A-AAAAAACGCCTTCAATAATTATGTACATAAATTAAAAAGAATCAGT
* * * **
10800563 GAAGGCATTTTTCTAGAATAATCGCCTTCACTAACCGTCTTAAATTTTGAGTGGTGGAATATTAA
125 AAAGGCATTTTTCTAGAATAATCGCCTTCACTAACCATCTTAAAATTTGAGTACTGGAATATTAA
* * * * *
10800628 AGGTGTTTTTCACTGGGAAATACCTTTAATAATCCCAAAAATCTTAAAAGAAAATTATTGAAGGT
190 AGGTGTTTTTCACTGAGAAATACATTTAATAATCCAAAAAATCTTAAAAGAAAATTATTAAAGGC
* * * *
10800693 GTTTATTCTCAAAAAATACCTTCAATAATTATGTACATAAATTAAAAGGAATTAGTGAAGGCATT
255 GTTTATTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATCAATAAAGGCATT
** * * * *
10800758 TTTCTTGAATAAACGCCTTTACTAACCATCTTAAAATTTGAGTAGTGAAA
320 TTTCTACAATAAACACCTTCACTAACCATCTTAAAATTTGAATAATGAAA
* *
10800808 TATTGAAAGTGTTTTTCACTATAAGACGCCTTTAATAATCTCAAAAATTTTTTAAAAAAAATTAT
1 TATT-AAAGTGTTTTTCACTAAAAGATGCCTTTAATAATCTCAAAAA-TTTTTAAAAAAAATTAT
* * * *
10800873 TGAATGCGTTTGTTCTAAAAAAACGCCTTCAATAATTATGTACA-AAATTTAAAAATAGTTATTA
64 TGAA-G-GTTTGTTCTAAAAAAACGCCTTCAATAATTATGTACATAAA-TTAAAAAGAATCAGTA
** * * ** * *
10800937 AAGGTTTTTTTTTGGAATAAAT-GCCTTCACTAATTATCTTAAAATTTGAGTACTGGTATATT-G
126 AAGGCATTTTTCTAGAAT-AATCGCCTTCACTAACCATCTTAAAATTTGAGTACTGGAATATTAA
* *
10801000 AGGTGTTTTTCACT-AGAAGATACATTTAATAATCTAAAAAATTTTTAAAATG-AAATTATTAAA
190 AGGTGTTTTTCACTGAGAA-ATACATTTAATAATCCAAAAAA-TCTTAAAA-GAAAATTATTAAA
* * * * *
10801063 GGCGTTTGTTCTTAAAAAACACCTTTAATAATTATGTACATAAATTAAATGGAATCAATAAAGGT
252 GGCGTTTATTCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATCAATAAAGGC
* * * * *
10801128 GTTTTTCTACAATAAATACCTTCACTAACCGTTTTAAAATTTGAATAATGGAA
317 ATTTTTCTACAATAAACACCTTCACTAACCATCTTAAAATTTGAATAATGAAA
* * *
10801181 TATTAAAG-GCATTTTTCACTGGAAA-ATGCCTTTAATAATC-CAAAAAATTATAAAAGAAAATT
1 TATTAAAGTG--TTTTTCACT-AAAAGATGCCTTTAATAATCTCAAAAATTTTTAAAA-AAAATT
* * *
10801243 ATTGAAGGTGTTTGTTCT--CAAAA-------AATAATTATGTACATAAATTAAAAGGAATTAGT
62 ATTGAA-G-GTTTGTTCTAAAAAAACGCCTTCAATAATTATGTACATAAATTAAAAAGAATCAGT
* *
10801299 GAAGGCATTTTTTTAGAAT
125 AAAGGCATTTTTCTAGAAT
10801318 TTGAGTAGTG
Statistics
Matches: 428, Mismatches: 66, Indels: 42
0.80 0.12 0.08
Matches are distributed among these distances:
363 40 0.09
364 3 0.01
370 4 0.01
371 11 0.03
372 69 0.16
373 274 0.64
374 23 0.05
375 4 0.01
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (369 bp):
TATTAAAGTGTTTTTCACTAAAAGATGCCTTTAATAATCTCAAAAATTTTTAAAAAAAATTATTG
AAGGTTTGTTCTAAAAAAACGCCTTCAATAATTATGTACATAAATTAAAAAGAATCAGTAAAGGC
ATTTTTCTAGAATAATCGCCTTCACTAACCATCTTAAAATTTGAGTACTGGAATATTAAAGGTGT
TTTTCACTGAGAAATACATTTAATAATCCAAAAAATCTTAAAAGAAAATTATTAAAGGCGTTTAT
TCTCAAAAAACACCTTCAATAATTATGTACATAAATTAAAAGGAATCAATAAAGGCATTTTTCTA
CAATAAACACCTTCACTAACCATCTTAAAATTTGAATAATGAAA
Found at i:10807714 original size:16 final size:16
Alignment explanation
Indices: 10807693--10807728 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
10807683 AAACAGTTTG
10807693 GATAGCTTCAATACTT
1 GATAGCTTCAATACTT
10807709 GATAGCTTCAATACTT
1 GATAGCTTCAATACTT
10807725 GATA
1 GATA
10807729 TTAAACTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (16 bp):
GATAGCTTCAATACTT
Found at i:10809350 original size:34 final size:34
Alignment explanation
Indices: 10809312--10809436 Score: 135
Period size: 34 Copynumber: 3.7 Consensus size: 34
10809302 GGTGTCTCAA
* * *
10809312 AGATACAAACACCACTAAAATAGCGATGTTTTCT
1 AGATACAAACACCACTAATATAGTGATATTTTCT
**
10809346 AGATACAAATGCCACTAATATAGTGATATTTT-T
1 AGATACAAACACCACTAATATAGTGATATTTTCT
* *
10809379 CAGATACAAACACCGCTAATATAGTGGTATTTTCT
1 -AGATACAAACACCACTAATATAGTGATATTTTCT
** **
10809414 AGATTGAAATGCCACTAATATAG
1 AGATACAAACACCACTAATATAG
10809437 CGGCATTTTG
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
33 1 0.01
34 73 0.97
35 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (34 bp):
AGATACAAACACCACTAATATAGTGATATTTTCT
Found at i:10809363 original size:68 final size:69
Alignment explanation
Indices: 10809291--10809436 Score: 154
Period size: 68 Copynumber: 2.2 Consensus size: 69
10809281 TAAAAACATT
* * *
10809291 ACTAAAT-TAGTGGTGTCTCAAAGATACAAACACCACTAAAATAGCGATGTTTTCTAGATACAAA
1 ACTAAATATAGTGATATCTCAAAGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAA
10809355 TGCC
66 TGCC
* *** * * * * **
10809359 ACT-AATATAGTGATATTTTTCAGATACAAACACCGCTAATATAGTGGTATTTTCTAGATTGAAA
1 ACTAAATATAGTGATATCTCAAAGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAA
10809423 TGCC
66 TGCC
10809427 ACT-AATATAG
1 ACTAAATATAG
10809437 CGGCATTTTG
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
67 3 0.05
68 61 0.95
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (69 bp):
ACTAAATATAGTGATATCTCAAAGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAA
TGCC
Found at i:10809445 original size:34 final size:34
Alignment explanation
Indices: 10809312--10809459 Score: 129
Period size: 34 Copynumber: 4.4 Consensus size: 34
10809302 GGTGTCTCAA
** * * * *
10809312 AGATACAAACACCACTAAAATAGCGATGTTTTCT
1 AGATACAAATGCCACTAATATAGTGGTATTTTCT
*
10809346 AGATACAAATGCCACTAATATAGTGATATTTT-T
1 AGATACAAATGCCACTAATATAGTGGTATTTTCT
** *
10809379 CAGATACAAACACCGCTAATATAGTGGTATTTTCT
1 -AGATACAAATGCCACTAATATAGTGGTATTTTCT
** * *
10809414 AGATTGAAATGCCACTAATATAGCGGCATTTTGC-
1 AGATACAAATGCCACTAATATAGTGGTATTTT-CT
*
10809448 ATATACAAATGC
1 AGATACAAATGC
10809460 TTCTAATGTA
Statistics
Matches: 92, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
33 1 0.01
34 89 0.97
35 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (34 bp):
AGATACAAATGCCACTAATATAGTGGTATTTTCT
Found at i:10809445 original size:68 final size:68
Alignment explanation
Indices: 10809312--10809456 Score: 182
Period size: 68 Copynumber: 2.1 Consensus size: 68
10809302 GGTGTCTCAA
* * *
10809312 AGATACAAACACCACTAAAATAGCGATGTTTTCTAGATACAAATGCCACTAATATAGTGATATTT
1 AGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
*
10809377 TTC
66 TGC
* * * * ** *
10809380 AGATACAAACACCGCTAATATAGTGGTATTTTCTAGATTGAAATGCCACTAATATAGCGGCATTT
1 AGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
10809445 TGC
66 TGC
*
10809448 ATATACAAA
1 AGATACAAA
10809457 TGCTTCTAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (68 bp):
AGATACAAACACCACTAAAATAGCGATATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
TGC
Found at i:10809466 original size:68 final size:68
Alignment explanation
Indices: 10809312--10809484 Score: 166
Period size: 68 Copynumber: 2.5 Consensus size: 68
10809302 GGTGTCTCAA
* * *** * *
10809312 AGATACAAACACCACTAAAATAGCGATGTTTTCTAGATACAAATGCCACTAATATAGTGATATTT
1 AGATACAAACACCGCTAATATAGCGGCATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
*
10809377 TTC
66 TGC
* * ** *
10809380 AGATACAAACACCGCTAATATAGTGGTATTTTCTAGATTGAAATGCCACTAATATAGCGGCATTT
1 AGATACAAACACCGCTAATATAGCGGCATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
10809445 TGC
66 TGC
* ** ** * *
10809448 ATATACAAATGCTTCTAATGTAGCGGCATTTTATAGA
1 AGATACAAACACCGCTAATATAGCGGCATTTTCTAGA
10809485 AAAATGTTGC
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 85 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (68 bp):
AGATACAAACACCGCTAATATAGCGGCATTTTCTAGATACAAATGCCACTAATATAGCGACATTT
TGC
Found at i:10814386 original size:22 final size:21
Alignment explanation
Indices: 10814345--10814386 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10814335 TGGAATCTAA
*
10814345 ATCGATGATTATCATCTAACC
1 ATCGATGATTATCATATAACC
*
10814366 ATCGATGATGTCTCATATAAC
1 ATCGATGAT-TATCATATAAC
10814387 AGAACTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (21 bp):
ATCGATGATTATCATATAACC
Found at i:10816890 original size:124 final size:124
Alignment explanation
Indices: 10816735--10816968 Score: 335
Period size: 125 Copynumber: 1.9 Consensus size: 124
10816725 TTATTTAGGA
* *
10816735 TTATTAAAGGCGTCTTCTGTACAAAATACCTTTAATATTACACTACTAAAATTTTAA-AGGGTTA
1 TTATTAAAGGCATCTTCTGTACAAAATACCTTCAATATTACACTACTAAAATTTTAATAGGGTTA
* * *
10816799 TTAAAGGTGTTTTTTCTAGAAAAATGCCTTGACTAATTCGTTTTATTTTTTGAAAGAAT
66 GTAAAGGCGTTTATTCTAGAAAAATGCCTTGACTAATTCGTTTTATTTTTTGAAAGAAT
* ** * * *
10816858 TTATTGAAGGCATCTTCTAGTGTAAAATACCTTCAATATTCCACTACTCAAATTTTAATATGGTT
1 TTATTAAAGGCATCTTCT-GTACAAAATACCTTCAATATTACACTACTAAAATTTTAATAGGGTT
* *
10816923 AGTGAAGGCGTTTATTCTAGAAAAATGCCTTGACTAATTCTTTTTA
65 AGTAAAGGCGTTTATTCTAGAAAAATGCCTTGACTAATTCGTTTTA
10816969 ATTTATGTAC
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 16 0.17
124 34 0.35
125 46 0.48
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (124 bp):
TTATTAAAGGCATCTTCTGTACAAAATACCTTCAATATTACACTACTAAAATTTTAATAGGGTTA
GTAAAGGCGTTTATTCTAGAAAAATGCCTTGACTAATTCGTTTTATTTTTTGAAAGAAT
Found at i:10817109 original size:186 final size:186
Alignment explanation
Indices: 10816858--10817813 Score: 1172
Period size: 187 Copynumber: 5.1 Consensus size: 186
10816848 TTGAAAGAAT
* * *
10816858 TTATTGAAGGCATCTTCTAGTGTAAAATA-CCTTCAATATTCCACTACTCAAATTTTAATATGGT
1 TTATTAAAGGCATCTTCTAGTG-AAAAAAGCCTTCAATATTCCACTACTCAAATTTTAAGATGGT
* * *
10816922 TAGTGAAGGCGTTTATTCTAGAAAAATGCCTTGACTAATTCTTTTTAATTTATGTACATAATTAT
65 TAGTGAAGGCGTTTATTCTAGAAAAATGCCTTCAATGATTCTTTTTAATTTATGTACATAATTAT
**
10816987 TGAAGGTGTTTTTTTAGAACAAACACCTTCAATAATTTTCTTTTAAAATTTTT-AGGA
130 TGAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTTCTTTTAAAATTTTTGA-GA
* * * * *
10817044 TTAGTAAAGGCATCTTTTAGTGAAAAAAGCTTTCAATATTCCCCTACACAAATTTTAAGATGGTT
1 TTATTAAAGGCATCTTCTAGTGAAAAAAGCCTTCAATATTCCACTACTCAAATTTTAAGATGGTT
* * **
10817109 AGTGAAGGTGTTTATTCTAGCAAAATGCCTTCAATGATTCCATTTAATTTATGTACATAATTATT
66 AGTGAAGGCGTTTATTCTAGAAAAATGCCTTCAATGATTCTTTTTAATTTATGTACATAATTATT
* *
10817174 GAAGGCATTTTTTT-G-ACAAAAACGCTTTCAATAATTTTATTTTAAAAATTTTTGAGA
131 GAAGGCATTTTTTTAGAACAAACAC-C-TTCAATAATTTTCTTTT-AAAATTTTTGAGA
* * * * *
10817231 TTATTAAAGGCATCTTCTAGTGAAATACGCATTCAATATAT-CAGTACTCAAATTTTAAGACGGT
1 TTATTAAAGGCATCTTCTAGTGAAAAAAGCCTTCAATAT-TCCACTACTCAAATTTTAAGATGGT
* ** * * * *
10817295 TAGTAAACACGTTTATTCTAGAAAAATACTTTCAATAATTCCTTTTAAATTT-TGTACATAATTA
65 TAGTGAAGGCGTTTATTCTAGAAAAATGCCTTCAATGATT-CTTTTTAATTTATGTACATAATTA
* * *
10817359 TTGAATG-AGTTTTTTTAGAACAAACGCCTTCAATAATTTTTTTTTTAAAATTTTTGAGA
129 TTGAAGGCA-TTTTTTTAGAACAAACACCTTCAATAA-TTTTCTTTTAAAATTTTTGAGA
* * * * ***
10817418 TTATTAAAGGCTTCTTCTAGTGAAAAATGCCTTCAATATTCTACTACTCAAATTTTGAGACAATT
1 TTATTAAAGGCATCTTCTAGTGAAAAAAGCCTTCAATATTCCACTACTCAAATTTTAAGATGGTT
* * *
10817483 AATGAAGGCGTTTATTCTAGAAAAATGCCTTCATTGATTCCTTTTAATTTATGTACATAATTATT
66 AGTGAAGGCGTTTATTCTAGAAAAATGCCTTCAATGATTCTTTTTAATTTATGTACATAATTATT
* * *
10817548 GAAGTCATTTTTTGAGAACAAACATCTTCAATAATTTTCTTTTAAAATTTTTGAGA
131 GAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTTCTTTTAAAATTTTTGAGA
* * * * *
10817604 TTATTAAAGG-AGTCTTATAATGAAAAATGCCTTCAATATTCCACTACTCAAATTTTAATATAGT
1 TTATTAAAGGCA-TCTTCTAGTGAAAAAAGCCTTCAATATTCCACTACTCAAATTTTAAGATGGT
* * * * *
10817668 CAATGAAGGCATTTATTCTAGAAAAAATGCCTTCACTGATTCTTTTTAATTTATGTACATAATAA
65 TAGTGAAGGCGTTTATTCTAG-AAAAATGCCTTCAATGATTCTTTTTAATTTATGTACATAATTA
* * * *
10817733 TTGAAGGCATTTTTTGAGAACAAACGCCTTCAATAATTTTTTTTTTAAAAAATTTTGAGA
129 TTGAAGGCATTTTTTTAGAACAAACACCTTCAATAA-TTTTCTTTT-AAAATTTTTGAGA
* *
10817793 TTATTAAAGGCGTCTTTTAGT
1 TTATTAAAGGCATCTTCTAGT
10817814 ATAAAACTCC
Statistics
Matches: 662, Mismatches: 89, Indels: 35
0.84 0.11 0.04
Matches are distributed among these distances:
184 7 0.01
185 7 0.01
186 243 0.37
187 341 0.52
188 29 0.04
189 35 0.05
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.41
Consensus pattern (186 bp):
TTATTAAAGGCATCTTCTAGTGAAAAAAGCCTTCAATATTCCACTACTCAAATTTTAAGATGGTT
AGTGAAGGCGTTTATTCTAGAAAAATGCCTTCAATGATTCTTTTTAATTTATGTACATAATTATT
GAAGGCATTTTTTTAGAACAAACACCTTCAATAATTTTCTTTTAAAATTTTTGAGA
Found at i:10820360 original size:21 final size:21
Alignment explanation
Indices: 10820316--10820360 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
10820306 ATAAGTTTAA
* *
10820316 TATTAATTTGTTTATTATATT
1 TATTAATTTGTTTATAATACT
10820337 TATTAATTTGATTT-TAATACT
1 TATTAATTTG-TTTATAATACT
10820358 TAT
1 TAT
10820361 ATTTCATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
TATTAATTTGTTTATAATACT
Found at i:10821892 original size:35 final size:35
Alignment explanation
Indices: 10821853--10821922 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
10821843 ATTTATAAAC
* *
10821853 CAAATGTTTTCT-GAGCATAAATATACCACTGACTT
1 CAAATGTTTTCTAG-GCATAAACATACAACTGACTT
*
10821888 CAAATGTTTTCTAGGCATAAACCTACAACTGACTT
1 CAAATGTTTTCTAGGCATAAACATACAACTGACTT
10821923 AATATATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (35 bp):
CAAATGTTTTCTAGGCATAAACATACAACTGACTT
Found at i:10823043 original size:242 final size:241
Alignment explanation
Indices: 10822600--10823076 Score: 713
Period size: 242 Copynumber: 2.0 Consensus size: 241
10822590 TTCTCTCCAA
* * * *
10822600 AAAATGCCTAGAATAATTAATTACAAATAATTTTTGCAAAAACCCAAAAAAGGCTAAAGGAATGG
1 AAAATGCCTAAAATAATCAATTACAAATAATTTCTACAAAAACCCAAAAAAGGCTAAAGGAATGG
*
10822665 ATCAAACCTACCACCTTATGTTAACATCCGTACAATCCTAAAATTTTGATATGATATTTATTGAA
66 ATCAAACCTACCACCTTATGTTAACATCAGTACAATCCTAAAATTTTGATATGATATTTATTGAA
* * * * * * **
10822730 AGCGTTTTTAACCAAAAACGCCTTTAATAAGCTTATGAAATTTTTTGGTGGAATTACTAAAGGTG
131 AGCATCTTTAACAAAAAACACCTTCAATAAGCCTATGAAATTTTTTGGTGGAATTACTAAAGGCA
*
10822795 TTTCTTATAGAAAACACTTTCAATAATCGCATACATTTTTGCCCAG
196 TTTCTTATAGAAAACACCTTCAATAATCGCATACATTTTTGCCCAG
10822841 AAAATGCCTAAAATAATCAATTACAAATAATTTCTACAAAAACCCAAAAAAGGCTAAAGGGAA-G
1 AAAATGCCTAAAATAATCAATTACAAATAATTTCTACAAAAACCCAAAAAAGGCTAAA-GGAATG
** * * * *
10822905 GATGGAACCTACCACCTTATGGTTAACATTAGTACGATCTTAACATTTTGATATGATATTTATTG
65 GATCAAACCTACCACCTTAT-GTTAACATCAGTACAATCCTAAAATTTTGATATGATATTTATTG
* * * *
10822970 AAGGCATCTTTGACAAAAAACACCTTCAATAAGCCTGTGAAATTTTTTGGTGGAATTATTAAAGG
129 AAAGCATCTTTAACAAAAAACACCTTCAATAAGCCTATGAAATTTTTTGGTGGAATTACTAAAGG
10823035 CATTTCTTATAGAAAACACCTTCAATAATCGCATACATTTTT
194 CATTTCTTATAGAAAACACCTTCAATAATCGCATACATTTTT
10823077 TTATGAGGGG
Statistics
Matches: 210, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
241 73 0.35
242 137 0.65
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (241 bp):
AAAATGCCTAAAATAATCAATTACAAATAATTTCTACAAAAACCCAAAAAAGGCTAAAGGAATGG
ATCAAACCTACCACCTTATGTTAACATCAGTACAATCCTAAAATTTTGATATGATATTTATTGAA
AGCATCTTTAACAAAAAACACCTTCAATAAGCCTATGAAATTTTTTGGTGGAATTACTAAAGGCA
TTTCTTATAGAAAACACCTTCAATAATCGCATACATTTTTGCCCAG
Found at i:10825827 original size:10 final size:10
Alignment explanation
Indices: 10825812--10825845 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
10825802 TCAATATTTC
10825812 AAAATTTTTA
1 AAAATTTTTA
10825822 AAAA-TTTTA
1 AAAATTTTTA
*
10825831 TAAATTTTTA
1 AAAATTTTTA
10825841 AAAAT
1 AAAAT
10825846 ATAAAATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
AAAATTTTTA
Found at i:10828880 original size:19 final size:19
Alignment explanation
Indices: 10828858--10828897 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10828848 CTCAAACACT
* *
10828858 AAACTACCTTCCAAACCCA
1 AAACCACCTTCCAAAACCA
*
10828877 AAACCACTTTCCAAAACCA
1 AAACCACCTTCCAAAACCA
10828896 AA
1 AA
10828898 CCAATCCCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.15
Consensus pattern (19 bp):
AAACCACCTTCCAAAACCA
Found at i:10828970 original size:18 final size:18
Alignment explanation
Indices: 10828947--10828984 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10828937 ACATTATTAT
*
10828947 ATGCATTCATAAATTGTC
1 ATGCATTCACAAATTGTC
*
10828965 ATGCATTCACACATTGTC
1 ATGCATTCACAAATTGTC
10828983 AT
1 AT
10828985 TCATATCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (18 bp):
ATGCATTCACAAATTGTC
Found at i:10830821 original size:37 final size:37
Alignment explanation
Indices: 10830780--10830909 Score: 120
Period size: 37 Copynumber: 3.4 Consensus size: 37
10830770 AATAATAAGA
*
10830780 TAGTACATGCATTCGATTTCATCCACATCTTAATATG
1 TAGTACATGCATTCGATTTCATCCACATCTTAATAGG
* * *
10830817 TAGTACATGCATTTC-ATCTCATGCACATTTTAATAGG
1 TAGTACATGCA-TTCGATTTCATCCACATCTTAATAGG
* *
10830854 TGGTACATGCATT-GCATTTCATTTCATACACATCTTAATAGA
1 TAGTACATGCATTCG-ATTTCA--TC---CACATCTTAATAGG
*
10830896 TAATACATGCATTC
1 TAGTACATGCATTC
10830910 CACCTCATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
36 2 0.03
37 44 0.60
38 3 0.04
39 1 0.01
42 23 0.32
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.38
Consensus pattern (37 bp):
TAGTACATGCATTCGATTTCATCCACATCTTAATAGG
Found at i:10830886 original size:42 final size:42
Alignment explanation
Indices: 10830824--10830908 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
10830814 ATGTAGTACA
* * * **
10830824 TGCATTTCATCTCATGCACATTTTAATAGGTGGTACATGCAT
1 TGCATTTCATCTCATACACATCTTAATAGATAATACATGCAT
*
10830866 TGCATTTCATTTCATACACATCTTAATAGATAATACATGCAT
1 TGCATTTCATCTCATACACATCTTAATAGATAATACATGCAT
10830908 T
1 T
10830909 CCACCTCATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (42 bp):
TGCATTTCATCTCATACACATCTTAATAGATAATACATGCAT
Found at i:10830923 original size:37 final size:38
Alignment explanation
Indices: 10830772--10830929 Score: 113
Period size: 37 Copynumber: 4.1 Consensus size: 38
10830762 GAGTTGGAAA
* * * * *
10830772 TAATAAGATAGTACATGCATTCGATTTCATCCACATCT
1 TAATAGGATAATACATGCATTCCATCTCATACACATCT
* * * * *
10830810 TAATATG-TAGTACATGCATTTCATCTCATGCACATTT
1 TAATAGGATAATACATGCATTCCATCTCATACACATCT
* * * *
10830847 TAATAGGTGGTACATGCATTGCATTTCATTTCATACACATCT
1 TAATA-G-GATA-ATACA-TGCATTCCATCTCATACACATCT
* * *
10830889 TAATA-GATAATACATGCATTCCACCTCATTCACATTT
1 TAATAGGATAATACATGCATTCCATCTCATACACATCT
10830926 TAAT
1 TAAT
10830930 GGAAGTATCA
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
37 52 0.54
38 10 0.10
39 4 0.04
40 2 0.02
41 3 0.03
42 25 0.26
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (38 bp):
TAATAGGATAATACATGCATTCCATCTCATACACATCT
Found at i:10831505 original size:56 final size:56
Alignment explanation
Indices: 10831443--10831697 Score: 206
Period size: 56 Copynumber: 4.7 Consensus size: 56
10831433 AACACCTGTT
* * * *
10831443 AATATAGACTTGTATGTTTTAATTTTTCTTGCCTATACCGATAGTTAATGCTCGTC
1 AATATAGACTTATATATTTTAATTTTTCTTACCTATACCGACAGTTAATGCTCGTC
* * * * *
10831499 AGTATAGA--T-T-TA---TAATTTTTCTTACCCATACTGACACTTAAAGCTCGTC
1 AATATAGACTTATATATTTTAATTTTTCTTACCTATACCGACAGTTAATGCTCGTC
* * * * * ** *
10831548 AATTTAGATTTGTATGTTTTAA-TTTTCTTACTTATACCGACAGTTAGCGC-CTATC
1 AATATAGACTTATATATTTTAATTTTTCTTACCTATACCGACAGTTAATGCTC-GTC
* * * *
10831603 AGTATAGACTTATATATTTTAATTTTTCGTACCTATACCGAC-GATTAGTGCTTGTC
1 AATATAGACTTATATATTTTAATTTTTCTTACCTATACCGACAG-TTAATGCTCGTC
* * *
10831659 AATATAGGCTTATATATTTTAGTTTTTTTTACCTATACC
1 AATATAGACTTATATATTTTAATTTTTCTTACCTATACC
10831698 AATGCTTAAC
Statistics
Matches: 155, Mismatches: 33, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
49 37 0.24
51 1 0.01
52 2 0.01
53 2 0.01
54 2 0.01
55 42 0.27
56 69 0.45
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.44
Consensus pattern (56 bp):
AATATAGACTTATATATTTTAATTTTTCTTACCTATACCGACAGTTAATGCTCGTC
Found at i:10831518 original size:49 final size:49
Alignment explanation
Indices: 10831462--10831558 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
10831452 TTGTATGTTT
* * * * * *
10831462 TAATTTTTCTTGCCTATACCGATAGTTAATGCTCGTCAGTATAGATTTA
1 TAATTTTTCTTACCCATACCGACACTTAAAGCTCGTCAATATAGATTTA
* *
10831511 TAATTTTTCTTACCCATACTGACACTTAAAGCTCGTCAATTTAGATTT
1 TAATTTTTCTTACCCATACCGACACTTAAAGCTCGTCAATATAGATTT
10831559 GTATGTTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (49 bp):
TAATTTTTCTTACCCATACCGACACTTAAAGCTCGTCAATATAGATTTA
Found at i:10831721 original size:56 final size:55
Alignment explanation
Indices: 10831599--10831722 Score: 124
Period size: 56 Copynumber: 2.2 Consensus size: 55
10831589 AGTTAGCGCC
* *
10831599 TATCAGTATAGACTTATATATTTTAATTTTTCGTACCTATACCGACGATTAGTGCT
1 TATCAGTATAGACTTATATATTTTAATTTTTCGTACCTATACCAACGATTAG-ACT
* * * * ** * *
10831655 TGTCAATATAGGCTTATATATTTTAGTTTTTTTTACCTATACCAATGCTTA-ACAT
1 TATCAGTATAGACTTATATATTTTAATTTTTCGTACCTATACCAACGATTAGAC-T
10831710 TCATCAGTATAGA
1 T-ATCAGTATAGA
10831723 TTTGTAATTT
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
54 1 0.02
55 2 0.04
56 50 0.94
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (55 bp):
TATCAGTATAGACTTATATATTTTAATTTTTCGTACCTATACCAACGATTAGACT
Found at i:10831734 original size:49 final size:48
Alignment explanation
Indices: 10831681--10831783 Score: 125
Period size: 49 Copynumber: 2.1 Consensus size: 48
10831671 TATATTTTAG
*
10831681 TTTTTTTTACCTATACCAATGCTTAACATTCATCAGTATAGATTTGTAA
1 TTTTTTTTACCTATACCAATGCTTAACATCCATCAGTATAGATTTGT-A
* **** * *
10831730 TTTTTCTTACCTATGTTGATGCTTAACATCCGTCAGTATATATTTGTA
1 TTTTTTTTACCTATACCAATGCTTAACATCCATCAGTATAGATTTGTA
10831778 TTTTTT
1 TTTTTT
10831784 AATTTTCTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
48 6 0.13
49 39 0.87
ACGTcount: A:0.25, C:0.16, G:0.10, T:0.50
Consensus pattern (48 bp):
TTTTTTTTACCTATACCAATGCTTAACATCCATCAGTATAGATTTGTA
Found at i:10831841 original size:216 final size:215
Alignment explanation
Indices: 10831443--10831902 Score: 519
Period size: 216 Copynumber: 2.1 Consensus size: 215
10831433 AACACCTGTT
* * * * * *** *
10831443 AATATAGACTTGTATGTTTTAATTTTTCTTGCCTATACCGATAG-TTAATGCTCGTCAGTATAGA
1 AATATAGACTTATATATTTTAATTTTTTTTACCTATACCAAT-GCTTAACATTCATCAGTATAGA
*
10831507 TTTATAATTTTTCTTACCCATACTGACACTTAAAGCTCGTCAATTTAGATTTGTATGTTTTAATT
65 TTTATAATTTTTCTTACCCATACTGACACTTAAAGCTCGTCAATATAGATTTGTATGTTTTAATT
* * * * *
10831572 TTCTTACTTATACCGACAGTTAGCGCCTATCAGTATAGACTTATATATTTTAATTTTTCGTACCT
130 TTCTTACCTATACCAACAGTTAGAGACTATCAATATAGACTTATATATTTTAA-TTTTCGTACCT
* *
10831637 ATACCGACGATTAGTGCTTGTC
194 ATACCGACGATTAGAGATTGTC
* *
10831659 AATATAGGCTTATATATTTTAGTTTTTTTTACCTATACCAATGCTTAACATTCATCAGTATAGAT
1 AATATAGACTTATATATTTTAATTTTTTTTACCTATACCAATGCTTAACATTCATCAGTATAGAT
* * ** ** * * * *
10831724 TTGTAATTTTTCTTACCTATGTTGATGCTTAACATC-CGTCAGTATATATTTGTATTTTTTAATT
66 TTATAATTTTTCTTACCCATACTGACACTTAA-AGCTCGTCAATATAGATTTGTATGTTTTAATT
** * * * * *
10831788 TTCTTACCTATACCAATGGTTAGAGACTATTAATATAGATTTGTATGTTTTAATTTTCTTACCTA
130 TTCTTACCTATACCAACAGTTAGAGACTATCAATATAGACTTATATATTTTAATTTTCGTACCTA
* *
10831853 TACTGACGATTAGAGATTGTT
195 TACCGACGATTAGAGATTGTC
* *
10831874 AGTATAGACTTATATGTTTTAATTTTTTT
1 AATATAGACTTATATATTTTAATTTTTTT
10831903 ATTATAAAAT
Statistics
Matches: 200, Mismatches: 42, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
215 54 0.27
216 144 0.72
217 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (215 bp):
AATATAGACTTATATATTTTAATTTTTTTTACCTATACCAATGCTTAACATTCATCAGTATAGAT
TTATAATTTTTCTTACCCATACTGACACTTAAAGCTCGTCAATATAGATTTGTATGTTTTAATTT
TCTTACCTATACCAACAGTTAGAGACTATCAATATAGACTTATATATTTTAATTTTCGTACCTAT
ACCGACGATTAGAGATTGTC
Found at i:10831866 original size:55 final size:55
Alignment explanation
Indices: 10831766--10831899 Score: 169
Period size: 55 Copynumber: 2.4 Consensus size: 55
10831756 CATCCGTCAG
* * * *
10831766 TATATATTTGTATTTTTTAATTTTCTTACCTATACCAATGGTTAGAGACTATTAA
1 TATAGATTTGTATGTTTTAATTTTCTTACCTATACCAACGATTAGAGACTATTAA
** * * *
10831821 TATAGATTTGTATGTTTTAATTTTCTTACCTATACTGACGATTAGAGATTGTTAG
1 TATAGATTTGTATGTTTTAATTTTCTTACCTATACCAACGATTAGAGACTATTAA
* *
10831876 TATAGACTTATATGTTTTAATTTT
1 TATAGATTTGTATGTTTTAATTTT
10831900 TTTATTATAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (55 bp):
TATAGATTTGTATGTTTTAATTTTCTTACCTATACCAACGATTAGAGACTATTAA
Found at i:10832025 original size:24 final size:24
Alignment explanation
Indices: 10831993--10832039 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10831983 ACGTTGGTAA
* *
10831993 AATTATATTTTTAGTCATTAATATT
1 AATTATATTTATAATCA-TAATATT
10832018 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
10832040 GATATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:10832418 original size:68 final size:68
Alignment explanation
Indices: 10832346--10832472 Score: 209
Period size: 68 Copynumber: 1.9 Consensus size: 68
10832336 ACAGAAAGTA
* * *
10832346 AGAAGGTAATCATCCATTTATATACCAGTAGAAATAATTTTATAAACATCTTATTCATTCATATA
1 AGAAGGTAATCATCCATTTATATACCAGCAAAAATAATTTTATAAACATCCTATTCATTCATATA
10832411 TAT
66 TAT
* *
10832414 AGAAGGTAATCATCCATTTATATACTAGCAAAAATAATTTTATAAACATCCTCTTCATT
1 AGAAGGTAATCATCCATTTATATACCAGCAAAAATAATTTTATAAACATCCTATTCATT
10832473 AGTGTAATGC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (68 bp):
AGAAGGTAATCATCCATTTATATACCAGCAAAAATAATTTTATAAACATCCTATTCATTCATATA
TAT
Found at i:10838515 original size:21 final size:22
Alignment explanation
Indices: 10838486--10838528 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
10838476 ACACAACTAA
10838486 CTGAGAATGGCTTAGA-CAAAAC
1 CTGAGAATGGCTT-GACCAAAAC
10838508 CTGA-AATGGCTTGACCAAAAC
1 CTGAGAATGGCTTGACCAAAAC
10838529 AGAGAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 2 0.10
21 14 0.70
22 4 0.20
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (22 bp):
CTGAGAATGGCTTGACCAAAAC
Found at i:10842851 original size:49 final size:49
Alignment explanation
Indices: 10842775--10842877 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
10842765 CTTCCCTACA
* * *
10842775 AGAG-TGACAAGGTTGTCTCATAAAAGTATGATTGTGATGTAGTAGTAC
1 AGAGATGACAAGGCTATCCCATAAAAGTATGATTGTGATGTAGTAGTAC
*
10842823 AGAGATGACAAGGCTATCCCATAAAAGTATGATTGTGATGTAGTAGTAT
1 AGAGATGACAAGGCTATCCCATAAAAGTATGATTGTGATGTAGTAGTAC
10842872 AGAGAT
1 AGAGAT
10842878 CAAGTGTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 4 0.08
49 46 0.92
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (49 bp):
AGAGATGACAAGGCTATCCCATAAAAGTATGATTGTGATGTAGTAGTAC
Found at i:10843305 original size:19 final size:18
Alignment explanation
Indices: 10843283--10843327 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
10843273 AAAGTGACTT
* *
10843283 GAAAAGAAAAAAATAAAA
1 GAAAAAAAAAAAAGAAAA
10843301 GGAAAAAAAAAAAAGAAAA
1 -GAAAAAAAAAAAAGAAAA
10843320 GAAAAAAA
1 GAAAAAAA
10843328 GAAAGAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (18 bp):
GAAAAAAAAAAAAGAAAA
Found at i:10843307 original size:14 final size:13
Alignment explanation
Indices: 10843284--10843328 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
10843274 AAGTGACTTG
10843284 AAAA-GAAAAAAA
1 AAAAGGAAAAAAA
10843296 TAAAAGGAAAAAAA
1 -AAAAGGAAAAAAA
*
10843310 AAAAAGAAAAGAAA
1 AAAAGGAAAA-AAA
10843324 AAAAG
1 AAAAG
10843329 AAAGAAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 13 0.46
14 15 0.54
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (13 bp):
AAAAGGAAAAAAA
Found at i:10843329 original size:13 final size:13
Alignment explanation
Indices: 10843284--10843335 Score: 63
Period size: 13 Copynumber: 4.0 Consensus size: 13
10843274 AAGTGACTTG
10843284 AAAAGAAAA-AAA
1 AAAAGAAAAGAAA
*
10843296 TAAAAGGAAAAAAAA
1 -AAAA-GAAAAGAAA
10843311 AAAAGAAAAGAAA
1 AAAAGAAAAGAAA
10843324 AAAAG-AAAGAAA
1 AAAAGAAAAGAAA
10843336 CAAGAAAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
12 7 0.19
13 17 0.47
14 9 0.25
15 3 0.08
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAGAAA
Found at i:10844560 original size:28 final size:26
Alignment explanation
Indices: 10844517--10844584 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 26
10844507 TGAATCCAAT
* *
10844517 AAAAAAA-AAGAAAGAAAAAAATTGAG
1 AAAAAAAGAAAAAAG-AAAAAATTGAC
10844543 AAAAAAAGAAAAAGAGAAAAAATTGAC
1 AAAAAAAGAAAAA-AGAAAAAATTGAC
10844570 AAAAAGAAGAAAAAA
1 AAAAA-AAGAAAAAA
10844585 AAATGAAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
26 7 0.19
27 20 0.54
28 10 0.27
ACGTcount: A:0.78, C:0.01, G:0.15, T:0.06
Consensus pattern (26 bp):
AAAAAAAGAAAAAAGAAAAAATTGAC
Found at i:10845786 original size:14 final size:14
Alignment explanation
Indices: 10845750--10845787 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
10845740 TTGAGTCCAA
10845750 AATGCATGTTGCAT
1 AATGCATGTTGCAT
*
10845764 ATTGCATGTTGCAT
1 AATGCATGTTGCAT
*
10845778 AATGTATGTT
1 AATGCATGTT
10845788 TGAAATTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (14 bp):
AATGCATGTTGCAT
Found at i:10846669 original size:41 final size:40
Alignment explanation
Indices: 10846609--10846879 Score: 186
Period size: 40 Copynumber: 6.7 Consensus size: 40
10846599 AAGTCCTTTG
* * *
10846609 GGCAAAACCTCAAAATTTTAAATGATTTCCAATGACCTCCA
1 GGCAAAATCTTAAATTTTTAAATGATTTCCAA-GACCTCCA
* * * * * * *
10846650 AGCAAAATCTCAGATTTTTAAATCATTTCAAAAGAGCTCTA
1 GGCAAAATCTTAAATTTTTAAATGATTTC-CAAGACCTCCA
* * * * * ***
10846691 GGCAAAATCTTAAATCTTTGAATGATCTCAAAGATCTATG
1 GGCAAAATCTTAAATTTTTAAATGATTTCCAAGACCTCCA
* * **
10846731 GGCAAAATTTTAGATTTTTAAACAATTTCCAAGACCTCCA
1 GGCAAAATCTTAAATTTTTAAATGATTTCCAAGACCTCCA
* * *
10846771 GGCAAAA-CTTTAAAATTTTAAATGATTTCTAGGACCTCC-
1 GGCAAAATC-TTAAATTTTTAAATGATTTCCAAGACCTCCA
* * * ***
10846810 GAGCAAAATCTTAAATCTTTGAATGATGTCCAAGACCTTTG
1 G-GCAAAATCTTAAATTTTTAAATGATTTCCAAGACCTCCA
* * *
10846851 GGCAAAATTTTATATTTTTGAATGATTTC
1 GGCAAAATCTTAAATTTTTAAATGATTTC
10846880 TAGGTTCTCT
Statistics
Matches: 176, Mismatches: 49, Indels: 11
0.75 0.21 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.68
41 54 0.31
42 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (40 bp):
GGCAAAATCTTAAATTTTTAAATGATTTCCAAGACCTCCA
Found at i:10846816 original size:80 final size:79
Alignment explanation
Indices: 10846609--10846879 Score: 213
Period size: 80 Copynumber: 3.4 Consensus size: 79
10846599 AAGTCCTTTG
* * * * *
10846609 GGCAAAACCTCAAAATTTTAAATGATTTCCAATGACCTCCAAGCAAAATCTCAGATTTTTAAATC
1 GGCAAAACTTTAAAATTTTAAATGATTT-CAAGGACCTCCGAGCAAAATCTTAGATTTTTAAA-C
* *
10846674 ATTTCAAAAGAGCTCTA
64 ATTTC-CAAGACCTCTA
* * * * ** * *
10846691 GGCAAAA-TCTT-AAATCTTTGAATGATCTCAAAGATCTATGGGCAAAATTTTAGATTTTTAAAC
1 GGCAAAACT-TTAAAAT-TTTAAATGATTTCAAGGACCTCCGAGCAAAATCTTAGATTTTTAAAC
*
10846754 AATTTCCAAGACCTCCA
64 -ATTTCCAAGACCTCTA
* * * **
10846771 GGCAAAACTTTAAAATTTTAAATGATTTCTAGGACCTCCGAGCAAAATCTTAAATCTTTGAATGA
1 GGCAAAACTTTAAAATTTTAAATGATTTCAAGGACCTCCGAGCAAAATCTTAGAT-TTTTAAACA
* * *
10846836 TGTCCAAGACCTTTG
65 TTTCCAAGACCTCTA
* * * *
10846851 GGCAAAATTTTATATTTTTGAATGATTTC
1 GGCAAAACTTTAAAATTTTAAATGATTTC
10846880 TAGGTTCTCT
Statistics
Matches: 147, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
80 84 0.57
81 45 0.31
82 18 0.12
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (79 bp):
GGCAAAACTTTAAAATTTTAAATGATTTCAAGGACCTCCGAGCAAAATCTTAGATTTTTAAACAT
TTCCAAGACCTCTA
Found at i:10846916 original size:22 final size:22
Alignment explanation
Indices: 10846891--10846973 Score: 53
Period size: 22 Copynumber: 3.8 Consensus size: 22
10846881 AGGTTCTCTA
10846891 GGCAAAATTTCAAAGTCTTCAG
1 GGCAAAATTTCAAAGTCTTCAG
* * *
10846913 GGC-ACATTCTCAAAGTCCTCTG
1 GGCAAAATT-TCAAAGTCTTCAG
* * * *
10846935 CGCATAATCTCAAAATCTTTCA-
1 GGCAAAATTTCAAAGTC-TTCAG
* *
10846957 GGTACAATTTCAAAGTC
1 GGCAAAATTTCAAAGTC
10846974 CTCTAGGTAT
Statistics
Matches: 43, Mismatches: 15, Indels: 6
0.67 0.23 0.09
Matches are distributed among these distances:
21 4 0.09
22 35 0.81
23 4 0.09
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
GGCAAAATTTCAAAGTCTTCAG
Found at i:10846981 original size:22 final size:22
Alignment explanation
Indices: 10846956--10846999 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10846946 AAAATCTTTC
10846956 AGGTACAATTTCAA-AGTCCTCT
1 AGGTACAATTTCAAGA-TCCTCT
*
10846978 AGGTATAATTTCAAGATCCTCT
1 AGGTACAATTTCAAGATCCTCT
10847000 GGGCAAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (22 bp):
AGGTACAATTTCAAGATCCTCT
Found at i:10849491 original size:27 final size:26
Alignment explanation
Indices: 10849455--10849547 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
10849445 TCCAAACCCA
*
10849455 AAACTTTAAACCTTAAACCTTAAGCT
1 AAACTCTAAACCTTAAACCTTAAGCT
*
10849481 AAAACTCTAAAGCTTAAA-CTTAAGCCCT
1 -AAACTCTAAACCTTAAACCTTAAG--CT
*
10849509 AAA-TGCTAAACC-TAAACCTTAAATCCT
1 AAACT-CTAAACCTTAAACCTT-AA-GCT
10849536 AAACTCTAAACC
1 AAACTCTAAACC
10849548 CCAAACCATA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
26 11 0.20
27 39 0.71
28 5 0.09
ACGTcount: A:0.44, C:0.26, G:0.04, T:0.26
Consensus pattern (26 bp):
AAACTCTAAACCTTAAACCTTAAGCT
Found at i:10849518 original size:20 final size:20
Alignment explanation
Indices: 10849455--10849548 Score: 64
Period size: 20 Copynumber: 4.6 Consensus size: 20
10849445 TCCAAACCCA
*
10849455 AAACTTTAAACCTTAAA-CCTT
1 AAAC-TTAAACCCTAAATCC-T
* * * * *
10849476 AAGCTAAAACTCTAAAGCTT
1 AAACTTAAACCCTAAATCCT
* *
10849496 AAACTTAAGCCCTAAATGCT
1 AAACTTAAACCCTAAATCCT
* *
10849516 AAACCTAAACCTTAAATCCT
1 AAACTTAAACCCTAAATCCT
10849536 AAACTCTAAACCC
1 AAACT-TAAACCC
10849549 CAAACCATAA
Statistics
Matches: 53, Mismatches: 18, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
20 43 0.81
21 10 0.19
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.26
Consensus pattern (20 bp):
AAACTTAAACCCTAAATCCT
Found at i:10849593 original size:19 final size:19
Alignment explanation
Indices: 10849547--10849598 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
10849537 AACTCTAAAC
*
10849547 CCCAAACCATAAACCATAT
1 CCCAAACCCTAAACCATAT
10849566 CCCAAACCCTAAACCACT-T
1 CCCAAACCCTAAACCA-TAT
*
10849585 CCCAAACCCAAAAC
1 CCCAAACCCTAAAC
10849599 TCTAAAGCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 29 0.97
20 1 0.03
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (19 bp):
CCCAAACCCTAAACCATAT
Found at i:10849628 original size:113 final size:113
Alignment explanation
Indices: 10849481--10849695 Score: 376
Period size: 113 Copynumber: 1.9 Consensus size: 113
10849471 ACCTTAAGCT
*
10849481 AAAACTCTAAAGCTTAAACTTAAGCCCTAAATGCTAAACCTAAACCTTAAATCCTAAACTCTAAA
1 AAAACTCTAAAGCTTAAACCTAAGCCCTAAATGCTAAACCTAAACCTTAAATCCTAAACTCTAAA
* *
10849546 CCCCAAACCATAAACCATATCCCAAACCCTAAACCACTTCCCAAACCC
66 CCACAAACCATAAACCACATCCCAAACCCTAAACCACTTCCCAAACCC
10849594 AAAACTCTAAAGCTTAAACCTAAGCCCTAAATGCTAAACCTAAACCTTAAATCCTAAACTCTAAA
1 AAAACTCTAAAGCTTAAACCTAAGCCCTAAATGCTAAACCTAAACCTTAAATCCTAAACTCTAAA
* * *
10849659 CCACAAACCCTAAACCACCTCTCAAACCCTAAACCAC
66 CCACAAACCATAAACCACATCCCAAACCCTAAACCAC
10849696 CTTTCAAAAC
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.44, C:0.34, G:0.03, T:0.19
Consensus pattern (113 bp):
AAAACTCTAAAGCTTAAACCTAAGCCCTAAATGCTAAACCTAAACCTTAAATCCTAAACTCTAAA
CCACAAACCATAAACCACATCCCAAACCCTAAACCACTTCCCAAACCC
Found at i:10849631 original size:20 final size:20
Alignment explanation
Indices: 10849608--10849674 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
10849598 CTCTAAAGCT
* *
10849608 TAAACCTAAGCCCTAAATGC
1 TAAACCTAAACCCTAAATCC
*
10849628 TAAACCTAAACCTTAAATCC
1 TAAACCTAAACCCTAAATCC
*
10849648 TAAACTCTAAACCAC-AAACCC
1 TAAAC-CTAAACC-CTAAATCC
10849669 TAAACC
1 TAAACC
10849675 ACCTCTCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 23 0.57
21 17 0.43
ACGTcount: A:0.45, C:0.33, G:0.03, T:0.19
Consensus pattern (20 bp):
TAAACCTAAACCCTAAATCC
Found at i:10849686 original size:19 final size:19
Alignment explanation
Indices: 10849662--10849723 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
10849652 CTCTAAACCA
10849662 CAAACCCTAAACCACCTCT
1 CAAACCCTAAACCACCTCT
*
10849681 CAAACCCTAAACCACCTTT
1 CAAACCCTAAACCACCTCT
*
10849700 CAAAACC-AAACCAACC-CT
1 CAAACCCTAAACC-ACCTCT
10849718 CAAACC
1 CAAACC
10849724 TAATCATGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 11 0.29
19 27 0.71
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (19 bp):
CAAACCCTAAACCACCTCT
Found at i:10849693 original size:7 final size:7
Alignment explanation
Indices: 10849514--10849674 Score: 79
Period size: 7 Copynumber: 24.0 Consensus size: 7
10849504 GCCCTAAATG
10849514 CTAAA-C
1 CTAAACC
10849520 CTAAACC
1 CTAAACC
* *
10849527 TTAAATC
1 CTAAACC
*
10849534 CTAAACT
1 CTAAACC
10849541 CTAAACC
1 CTAAACC
*
10849548 CCAAACC
1 CTAAACC
*
10849555 ATAAACC
1 CTAAACC
* *
10849562 AT-ATCC
1 CTAAACC
10849568 C-AAACC
1 CTAAACC
10849574 CTAAACC
1 CTAAACC
*
10849581 ACT--TCC
1 -CTAAACC
10849587 C-AAACC
1 CTAAACC
* *
10849593 CAAAACT
1 CTAAACC
*
10849600 CTAAAGC
1 CTAAACC
*
10849607 TTAAA-C
1 CTAAACC
*
10849613 CTAAGCC
1 CTAAACC
**
10849620 CTAAATG
1 CTAAACC
10849627 CTAAA-C
1 CTAAACC
10849633 CTAAACC
1 CTAAACC
* *
10849640 TTAAATC
1 CTAAACC
*
10849647 CTAAACT
1 CTAAACC
10849654 CTAAACC
1 CTAAACC
10849661 AC-AAACC
1 -CTAAACC
10849668 CTAAACC
1 CTAAACC
10849675 ACCTCTCAAA
Statistics
Matches: 113, Mismatches: 31, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
5 1 0.01
6 27 0.24
7 82 0.73
8 3 0.03
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:10853690 original size:25 final size:25
Alignment explanation
Indices: 10853656--10853712 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
10853646 TTTTCTTTTC
*
10853656 TTTTTCATTTCATTTCAT-TTTTTAT
1 TTTTTTATTTCATTT-ATCTTTTTAT
* *
10853681 TTTTTTATTTCATTTTTCTTTTTGT
1 TTTTTTATTTCATTTATCTTTTTAT
10853706 TTTTTTA
1 TTTTTTA
10853713 GATAAACCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (25 bp):
TTTTTTATTTCATTTATCTTTTTAT
Found at i:10853703 original size:20 final size:22
Alignment explanation
Indices: 10853651--10853703 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
10853641 ATTCGTTTTC
10853651 TTTTCTTTTTCATTTCATTTCAT
1 TTTTCTTTTT-ATTTCATTTCAT
10853674 TTTT-TATTTT-TTT-ATTTCAT
1 TTTTCT-TTTTATTTCATTTCAT
10853694 TTTTCTTTTT
1 TTTTCTTTTT
10853704 GTTTTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 15 0.54
21 4 0.14
22 1 0.04
23 8 0.29
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTTTTATTTCATTTCAT
Found at i:10855706 original size:23 final size:24
Alignment explanation
Indices: 10855662--10855706 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
10855652 ATAAAGCAAT
* *
10855662 CCTATTTGCGCTATGACTTTTAAA
1 CCTATTTGCGCTATCACATTTAAA
*
10855686 CCTATTTG-GCTATCCCATTTA
1 CCTATTTGCGCTATCACATTTA
10855707 TATAAGGAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
CCTATTTGCGCTATCACATTTAAA
Found at i:10856451 original size:3 final size:3
Alignment explanation
Indices: 10856445--10856470 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10856435 AATTTTTTTA
10856445 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
10856471 ATCTTTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:10857503 original size:10 final size:10
Alignment explanation
Indices: 10857488--10857545 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 10
10857478 TGTATTAAAT
10857488 AATAATAATA
1 AATAATAATA
10857498 AATAATAATA
1 AATAATAATA
*
10857508 AATAGTAA-A
1 AATAATAATA
*
10857517 TAATAA-CATA
1 -AATAATAATA
10857527 AA-AATAA-A
1 AATAATAATA
*
10857535 AATAATCATA
1 AATAATAATA
10857545 A
1 A
10857546 TAAAAATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
8 5 0.13
9 9 0.24
10 24 0.63
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (10 bp):
AATAATAATA
Found at i:10857550 original size:20 final size:20
Alignment explanation
Indices: 10857488--10857550 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 20
10857478 TGTATTAAAT
* *
10857488 AATAATAATAAATAATAATAA
1 AATAAAAAT-AATCATAATAA
10857509 ATAGTAAATAATAA-CAT-A-AA
1 A-A-TAAA-AATAATCATAATAA
10857529 AATAAAAATAATCATAATAA
1 AATAAAAATAATCATAATAA
10857549 AA
1 AA
10857551 ATTAATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
17 5 0.15
18 7 0.21
19 2 0.06
20 7 0.21
21 2 0.06
22 3 0.09
23 5 0.15
24 3 0.09
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (20 bp):
AATAAAAATAATCATAATAA
Found at i:10865437 original size:15 final size:15
Alignment explanation
Indices: 10865417--10865447 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10865407 ATTACTCATT
*
10865417 TCATTTCTCAACTTA
1 TCATTTCCCAACTTA
10865432 TCATTTCCCAACTTA
1 TCATTTCCCAACTTA
10865447 T
1 T
10865448 AGCCAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (15 bp):
TCATTTCCCAACTTA
Found at i:10868912 original size:39 final size:40
Alignment explanation
Indices: 10868869--10869134 Score: 121
Period size: 40 Copynumber: 6.9 Consensus size: 40
10868859 TTAAAGTTCA
* * *
10868869 TTGCCTTTAGTGAGAA-AAGCCTTTTGA-ATTTAAAATTTT
1 TTGCCTTTAGTCA-AAGAAGCCTTTTAACATTTAAAATTTG
* *
10868908 TTGCCTCTAGTCAAAGAAGCCTTTTAACATTTAAAGTTTG
1 TTGCCTTTAGTCAAAGAAGCCTTTTAACATTTAAAATTTG
* * *
10868948 TTGTCTTTAGTTAAATG-AG-C------CATTTAAAGTTTG
1 TTGCCTTTAGTCAAA-GAAGCCTTTTAACATTTAAAATTTG
* * * **
10868981 TTGCCTCTAGTCAGATG-AGCCTTTTAACATTTAAAGTTCA
1 TTGCCTTTAGTCA-AAGAAGCCTTTTAACATTTAAAATTTG
* * * * * * *
10869021 TTGCCTCTAGTGAGAGGAGCCTTTTGA-ATTTAAAGTTCG
1 TTGCCTTTAGTCAAAGAAGCCTTTTAACATTTAAAATTTG
* * *
10869060 TTGCCTCT-GATCAGAAG-AGCCTTTTAACATTTAAAGTTTCA
1 TTGCCTTTAG-TCA-AAGAAGCCTTTTAACATTTAAAATTT-G
* * * * *
10869101 TTACCTTTGGTCAGAGGAGCCTTTTGA-ATTTAAA
1 TTGCCTTTAGTCAAAGAAGCCTTTTAACATTTAAA
10869135 GTATCATAGC
Statistics
Matches: 181, Mismatches: 28, Indels: 35
0.74 0.11 0.14
Matches are distributed among these distances:
33 26 0.14
34 2 0.01
38 3 0.02
39 53 0.29
40 77 0.43
41 19 0.10
42 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (40 bp):
TTGCCTTTAGTCAAAGAAGCCTTTTAACATTTAAAATTTG
Found at i:10868958 original size:79 final size:79
Alignment explanation
Indices: 10868856--10869136 Score: 328
Period size: 79 Copynumber: 3.6 Consensus size: 79
10868846 TTAAAGGAGC
* * *
10868856 CATTTAAAGTTCATTGCCTTTAGTGAGAAAAGCCTTTTGAATTTAAAATTTTTTGCCTCTAGTCA
1 CATTTAAAGTTCATTGCCTTTAGTGAGAAGAGCCTTTTGAATTTAAAGTTTGTTGCCTCTAGTCA
10868921 -AAGAAGCCTTTTAA
66 GAAG-AGCCTTTTAA
** * *
10868935 CATTTAAAGTTTGTTGTCTTTAGTTA-AATGAGCC------ATTTAAAGTTTGTTGCCTCTAGTC
1 CATTTAAAGTTCATTGCCTTTAGTGAGAA-GAGCCTTTTGAATTTAAAGTTTGTTGCCTCTAGTC
*
10868993 AGATGAGCCTTTTAA
65 AGAAGAGCCTTTTAA
* * *
10869008 CATTTAAAGTTCATTGCCTCTAGTGAGAGGAGCCTTTTGAATTTAAAGTTCGTTGCCTCT-GATC
1 CATTTAAAGTTCATTGCCTTTAGTGAGAAGAGCCTTTTGAATTTAAAGTTTGTTGCCTCTAG-TC
10869072 AGAAGAGCCTTTTAA
65 AGAAGAGCCTTTTAA
* * * *
10869087 CATTTAAAGTTTCATTACCTTTGGTCAGAGGAGCCTTTTGAATTTAAAGT
1 CATTTAAAG-TTCATTGCCTTTAGTGAGAAGAGCCTTTTGAATTTAAAGT
10869137 ATCATAGCCT
Statistics
Matches: 171, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
73 59 0.35
74 3 0.02
78 3 0.02
79 70 0.41
80 36 0.21
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (79 bp):
CATTTAAAGTTCATTGCCTTTAGTGAGAAGAGCCTTTTGAATTTAAAGTTTGTTGCCTCTAGTCA
GAAGAGCCTTTTAA
Found at i:10868977 original size:33 final size:33
Alignment explanation
Indices: 10868935--10869007 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
10868925 AGCCTTTTAA
* * *
10868935 CATTTAAAGTTTGTTGTCTTTAGTTAAATGAGC
1 CATTTAAAGTTTGTTGCCTCTAGTCAAATGAGC
*
10868968 CATTTAAAGTTTGTTGCCTCTAGTCAGATGAGC
1 CATTTAAAGTTTGTTGCCTCTAGTCAAATGAGC
*
10869001 CTTTTAA
1 CATTTAA
10869008 CATTTAAAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (33 bp):
CATTTAAAGTTTGTTGCCTCTAGTCAAATGAGC
Found at i:10868991 original size:73 final size:74
Alignment explanation
Indices: 10868896--10869098 Score: 223
Period size: 73 Copynumber: 2.7 Consensus size: 74
10868886 AGCCTTTTGA
* * * * * *
10868896 ATTTAAAATTTTTTGCCTCTAGTCA-AAGAAGCCTTTTAACATTTAAAGTTTGTTGTCTTTAGTT
1 ATTTAAAGTTTGTTGCCTCTAGTCAGAAG-AGCCTTTTAACATTTAAAGTTTATTGCCTCTAGTG
*
10868960 AAATGAGCC-
65 AAAGGAGCCT
* *
10868969 ATTTAAAGTTTGTTGCCTCTAGTCAGATGAGCCTTTTAACATTTAAAGTTCATTGCCTCTAGTGA
1 ATTTAAAGTTTGTTGCCTCTAGTCAGAAGAGCCTTTTAACATTTAAAGTTTATTGCCTCTAGTGA
*
10869034 GAGGAGCCTTTT
66 AAGGAGCC---T
*
10869046 GAATTTAAAGTTCGTTGCCTCT-GATCAGAAGAGCCTTTTAACATTTAAAGTTT
1 --ATTTAAAGTTTGTTGCCTCTAG-TCAGAAGAGCCTTTTAACATTTAAAGTTT
10869099 CATTACCTTT
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
73 60 0.55
74 2 0.02
78 1 0.01
79 46 0.42
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (74 bp):
ATTTAAAGTTTGTTGCCTCTAGTCAGAAGAGCCTTTTAACATTTAAAGTTTATTGCCTCTAGTGA
AAGGAGCCT
Found at i:10869012 original size:40 final size:40
Alignment explanation
Indices: 10868968--10869164 Score: 213
Period size: 40 Copynumber: 5.0 Consensus size: 40
10868958 TTAAATGAGC
** *
10868968 CATTTAAAGTTTGTTGCCTCTAGTCAGATGAGCCTTTTAA
1 CATTTAAAGTTCATTGCCTCTAGTCAGAGGAGCCTTTTAA
* *
10869008 CATTTAAAGTTCATTGCCTCTAGTGAGAGGAGCCTTTTGA
1 CATTTAAAGTTCATTGCCTCTAGTCAGAGGAGCCTTTTAA
* *
10869048 -ATTTAAAGTTCGTTGCCTCT-GATCAGAAGAGCCTTTTAA
1 CATTTAAAGTTCATTGCCTCTAG-TCAGAGGAGCCTTTTAA
* * * *
10869087 CATTTAAAGTTTCATTACCTTTGGTCAGAGGAGCCTTTTGA
1 CATTTAAAG-TTCATTGCCTCTAGTCAGAGGAGCCTTTTAA
* * *
10869128 -ATTTAAAGTATCATAGCCTCTATTTAGAGGAG-CTTTT
1 CATTTAAAGT-TCATTGCCTCTAGTCAGAGGAGCCTTTT
10869165 CAACTTTTCT
Statistics
Matches: 132, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 39 0.30
40 67 0.51
41 24 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (40 bp):
CATTTAAAGTTCATTGCCTCTAGTCAGAGGAGCCTTTTAA
Found at i:10869052 original size:112 final size:111
Alignment explanation
Indices: 10868823--10869065 Score: 306
Period size: 112 Copynumber: 2.2 Consensus size: 111
10868813 TCAAATGTTT
* * *
10868823 AATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCCATTTAAAGTTCATTGCCTTTAGTGAGAAAAG
1 AATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTAGTCAGAAAAG
* **
10868888 CCTTTTGAATTTAAAATTTTTTGCCTCTAGTCAAAGAAGCCTTTTA
66 CCTTTTAAATTTAAAATTCATTGCCTCTAGTCAAAGAAGCCTTTTA
* * ** **
10868934 ACATTTAAAGTTTGTTGTCTTTAGTTAAATGAGCCATTTAAAGTTTGTTGCCTCTAGTCAGATGA
1 A-ATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTAGTCAGAAAA
* * * * *
10868999 GCCTTTTAACATTTAAAGTTCATTGCCTCTAGTGAGAGGAGCCTTTTG
65 GCCTTTTAA-ATTTAAAATTCATTGCCTCTAGTCAAAGAAGCCTTTTA
*
10869047 AATTTAAAGTTCGTTGCCT
1 AATTTAAAGTTTGTTGCCT
10869066 CTGATCAGAA
Statistics
Matches: 111, Mismatches: 19, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
111 1 0.01
112 78 0.70
113 32 0.29
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (111 bp):
AATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCCATTTAAAGTTCATTGCCTCTAGTCAGAAAAG
CCTTTTAAATTTAAAATTCATTGCCTCTAGTCAAAGAAGCCTTTTA
Found at i:10869355 original size:3 final size:3
Alignment explanation
Indices: 10869347--10869372 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10869337 ATTTTGCTTA
10869347 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
10869373 ATCTTTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:10870261 original size:19 final size:19
Alignment explanation
Indices: 10870233--10870281 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
10870223 CATTTATAAG
* *
10870233 TTTTTTTTTTTTCATTTTA
1 TTTTTATTTTTACATTTTA
*
10870252 TTTTTATTTTTAGATTTTA
1 TTTTTATTTTTACATTTTA
10870271 TTTTTATTTTT
1 TTTTTATTTTT
10870282 GTATTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTATTTTTACATTTTA
Found at i:10870281 original size:6 final size:6
Alignment explanation
Indices: 10870234--10870281 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
10870224 ATTTATAAGT
* *
10870234 TTTTTT TTTTTCA -TTTTA TTTTTA TTTTTA GATTTTA TTTTTA TTTTT
1 TTTTTA TTTTT-A TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTT
10870282 GTATTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
5 1 0.03
6 30 0.83
7 5 0.14
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:10870322 original size:7 final size:7
Alignment explanation
Indices: 10870310--10870338 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
10870300 GTTTATGATG
10870310 TTTATAA
1 TTTATAA
10870317 TTTATAA
1 TTTATAA
10870324 TTTATAA
1 TTTATAA
10870331 TTTATAA
1 TTTATAA
10870338 T
1 T
10870339 ATTTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATAA
Found at i:10875759 original size:6 final size:6
Alignment explanation
Indices: 10875750--10875786 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
10875740 AAAAAGCATG
*
10875750 GCAAAA GCAAAA GCAAAA GCAAAA ACAAAA GCCAAAA
1 GCAAAA GCAAAA GCAAAA GCAAAA GCAAAA G-CAAAA
10875787 TGGCTAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.68, C:0.19, G:0.14, T:0.00
Consensus pattern (6 bp):
GCAAAA
Found at i:10883027 original size:15 final size:15
Alignment explanation
Indices: 10883007--10883035 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10882997 CATTCAACTA
10883007 AAAATTTTAATTTTC
1 AAAATTTTAATTTTC
10883022 AAAATTTTAATTTT
1 AAAATTTTAATTTT
10883036 TTTAACCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
AAAATTTTAATTTTC
Found at i:10883549 original size:22 final size:23
Alignment explanation
Indices: 10883513--10883555 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10883503 GTCATTAAAC
*
10883513 AAAAAAATAATAAT-ATAAAATT
1 AAAAAAATAAAAATAATAAAATT
*
10883535 AAAAAATTAAAAATAATAAAA
1 AAAAAAATAAAAATAATAAAA
10883556 ACATATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (23 bp):
AAAAAAATAAAAATAATAAAATT
Found at i:10885770 original size:19 final size:21
Alignment explanation
Indices: 10885746--10885792 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
10885736 AACCCTAAGT
*
10885746 CCTAAATCAAAA-CT-TAAAC
1 CCTAAATCAAAACCTGAAAAC
10885765 CCTAAAT-AAAACCTGAAAAC
1 CCTAAATCAAAACCTGAAAAC
10885785 CCTAAATC
1 CCTAAATC
10885793 CACTCAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.17
19 9 0.38
20 11 0.46
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.19
Consensus pattern (21 bp):
CCTAAATCAAAACCTGAAAAC
Found at i:10887026 original size:34 final size:34
Alignment explanation
Indices: 10886988--10887056 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
10886978 ATTTTGATTG
*
10886988 ATATATTGCTTTGCATACTTTTGCATATTTACTT
1 ATATATTGCTTTGCACACTTTTGCATATTTACTT
10887022 ATATATTGCTTTGCACACTTTTGCATATTTACTT
1 ATATATTGCTTTGCACACTTTTGCATATTTACTT
10887056 A
1 A
10887057 CATGCATAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.51
Consensus pattern (34 bp):
ATATATTGCTTTGCACACTTTTGCATATTTACTT
Found at i:10898216 original size:61 final size:62
Alignment explanation
Indices: 10898124--10898284 Score: 164
Period size: 63 Copynumber: 2.6 Consensus size: 62
10898114 CTAAGAGATG
* * * * *
10898124 ATTGAAGGTGTTTTCTGCCCAAATACACCTTCAATACTCCAAACAA-AAAATTTTGAGGGGATT
1 ATTGAAAGTG-TTT-TGCCCAAAAATACCTTCAATAATCCAAACAACAAAATTTAGAGGGGATT
* *** *
10898187 ATTGAAAGTGTTTTGCCCAAAAATGCCTTCAATAATCCCCTCAACAAAATTTAGATGGGATT
1 ATTGAAAGTGTTTTGCCCAAAAATACCTTCAATAATCCAAACAACAAAATTTAGAGGGGATT
* *
10898249 ATTGAAGACATTTTTTG-CCAAAAATACCTTCAATAA
1 ATTGAA-A-GTGTTTTGCCCAAAAATACCTTCAATAA
10898285 ATTTAGAAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
61 24 0.29
62 24 0.29
63 28 0.34
64 6 0.07
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (62 bp):
ATTGAAAGTGTTTTGCCCAAAAATACCTTCAATAATCCAAACAACAAAATTTAGAGGGGATT
Found at i:10898474 original size:35 final size:35
Alignment explanation
Indices: 10898423--10898498 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
10898413 GTTTAATTAT
* * *
10898423 ACATGTGAAGTCAGTTGTAGTTTTATGCCCAGAAA
1 ACATTTGAAGTCAGTTGTAGGTTTATGCCCAAAAA
*
10898458 ATATTTGAAGTCAGTTGTAGGTTTATGCCCAAAAA
1 ACATTTGAAGTCAGTTGTAGGTTTATGCCCAAAAA
10898493 ACATTT
1 ACATTT
10898499 AGTTTATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (35 bp):
ACATTTGAAGTCAGTTGTAGGTTTATGCCCAAAAA
Found at i:10901565 original size:25 final size:25
Alignment explanation
Indices: 10901531--10901628 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 25
10901521 CATACTATAG
*
10901531 AAACACCATTCAGCAAACCATTCAA
1 AAACACCATTCAACAAACCATTCAA
* ** * *
10901556 AAACACCATTTAGGAAGCCATTCAG
1 AAACACCATTCAACAAACCATTCAA
* *
10901581 AAACACAATTCAAAAAACCAATATCATA
1 AAACACCATTCAACAAACC-AT-TCA-A
* *
10901609 CAATACCATTCAACAAACCA
1 AAACACCATTCAACAAACCA
10901629 CAATATTTAA
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
25 35 0.62
26 2 0.04
27 4 0.07
28 15 0.27
ACGTcount: A:0.50, C:0.28, G:0.05, T:0.17
Consensus pattern (25 bp):
AAACACCATTCAACAAACCATTCAA
Found at i:10902989 original size:319 final size:320
Alignment explanation
Indices: 10902394--10903044 Score: 923
Period size: 319 Copynumber: 2.0 Consensus size: 320
10902384 TGTTATTAGT
* * * *
10902394 AAAAAATGCTTATAATAATTTCACTACCTTCACTAATATAAAAATTATAAGTGAAGGTTTTTTTT
1 AAAAAATGCCTATAATAATCTCACTACCTTCACTAATATAAAAATTATAAGTGAAGGCTATTTTT
* * *
10902459 TTGCCAAAAATGCCTTCAATAATCCCCTTAAAATTTGATTACAAGATTTTTGAAGGCATTTTTAC
66 TTGCCAAAAATACCTTCAATAATCCCCTTAAAATTTGACTACAAGATTATTGAAGGCATTTTTAC
* ** ** * *
10902524 TAAATGATGCCTTTAATAATCCCAAAAAATTTTTAAAAGGAAATTATTGAAGATATTTTTTTTGT
131 TAAAAGACACCTTTAATAATCCCAAAAAATTTTTAAAAAAAAATTATTGAAGACA-TTATTTTGT
* * * * *
10902589 AGGAAATGCCTTCAATAATTCGATCCATTTTTTCAATAGCTTGTTTATTGTAGGCATTTTATGCC
195 AGAAAATGCCTTCAATAATCCGATCCATTTTTTCAATAGCTTGTTTATTGGAGGCATTTCATACC
* *
10902654 AAAAACGACTTCAATAATCTAGTCCAAAAATATTACAAGGATTATTAAAGGCATTGTATAA
260 AAAAACGACTTCAATAATCCAGTCCAAAAATATTACAAGGATTATGAAAGGCATTGTATAA
* *
10902715 ACAAAATGCCTATAATAATCTCA-TCGCCTTCACTAATATAAAAATTATAAGTGAA-GCTATTTT
1 AAAAAATGCCTATAATAATCTCACT-ACCTTCACTAATATAAAAATTATAAGTGAAGGCTATTTT
* **
10902778 TTTGCCAAAAATACCTTCAATAATCCCCTTAAAATTTGACTACGAGATTATTGAAGTTGTTTTTT
65 TTTGCCAAAAATACCTTCAATAATCCCCTTAAAATTTGACTACAAGATTATTGAAG--GCATTTT
* *
10902843 TACTAAAAGACACCTTTAATAATCCCATAAAATTTTTAAAAAAAAATTATTGAAGGCA-TATTTT
128 TACTAAAAGACACCTTTAATAATCCCAAAAAATTTTTAAAAAAAAATTATTGAAGACATTATTTT
*
10902907 -TAGAAAATGCCTTCAATAATCCGATTCATTTTTTCAATAGCTTGTTTATTGGAGGCATTTCATA
193 GTAGAAAATGCCTTCAATAATCCGATCCATTTTTTCAATAGCTTGTTTATTGGAGGCATTTCATA
* * * * * *
10902971 CTAAAAATGCCTTCAATAATCCAGTCTAAAAATATTACAAGGATTATGGAAGGCATTTTATAA
258 CCAAAAACGACTTCAATAATCCAGTCCAAAAATATTACAAGGATTATGAAAGGCATTGTATAA
10903034 AAAAAATGCCT
1 AAAAAATGCCT
10903045 CCAATAATTT
Statistics
Matches: 291, Mismatches: 36, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
319 123 0.42
320 64 0.22
321 49 0.17
322 55 0.19
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36
Consensus pattern (320 bp):
AAAAAATGCCTATAATAATCTCACTACCTTCACTAATATAAAAATTATAAGTGAAGGCTATTTTT
TTGCCAAAAATACCTTCAATAATCCCCTTAAAATTTGACTACAAGATTATTGAAGGCATTTTTAC
TAAAAGACACCTTTAATAATCCCAAAAAATTTTTAAAAAAAAATTATTGAAGACATTATTTTGTA
GAAAATGCCTTCAATAATCCGATCCATTTTTTCAATAGCTTGTTTATTGGAGGCATTTCATACCA
AAAACGACTTCAATAATCCAGTCCAAAAATATTACAAGGATTATGAAAGGCATTGTATAA
Found at i:10903307 original size:23 final size:23
Alignment explanation
Indices: 10903281--10903326 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
10903271 ATTAAAGGTG
*
10903281 TTTTTGATAGAAAATTGCCTTCA
1 TTTTTGATAGAAAAATGCCTTCA
*
10903304 TTTTTGGTAGAAAAATGCCTTCA
1 TTTTTGATAGAAAAATGCCTTCA
10903327 CAGATATTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (23 bp):
TTTTTGATAGAAAAATGCCTTCA
Found at i:10909560 original size:161 final size:161
Alignment explanation
Indices: 10909333--10909646 Score: 377
Period size: 161 Copynumber: 2.0 Consensus size: 161
10909323 AATTAACAAT
* * *
10909333 TATTGTTATGTTTTAATAGTTTTGATAGTTTCAATACATGATATTAAACTTATCCAAAGTATTGA
1 TATTGTTATATTTTAACAGTTTGGATAGTTTCAATACATGATATTAAACTTATCCAAAGTATTGA
*
10909398 ACTTAGTTTCTAC-ATTTGATATGCATAAAAAAGTTATTATTTACATCGATTTAGGACT-TT-TT
66 ACTTAGTTTCTACGA-TTGATATGCATAAAAAAGTTATCATTTACATCGATTTAGGACTATTATT
* *
10909460 GTGCATTTAATAGGTAAAAATACAAAATTGTTGG
130 G-CCATTTAA-AGGCAAAAATACAAAATTGTTGG
* * *
10909494 TATTGTTCTATTTTAACAGTTTGGATAGCTTT-AATACATGATATTAAACTTGTTCAAA-TGATT
1 TATTGTTATATTTTAACAGTTTGGATAG-TTTCAATACATGATATTAAACTTATCCAAAGT-ATT
* * * ** * * * *
10909557 GAACTTGGTTTTTGCGATTGATATGTGTGAAAAAGTTATCGTTTACATCTATTTGGGACTATTAT
64 GAACTTAGTTTCTACGATTGATATGCATAAAAAAGTTATCATTTACATCGATTTAGGACTATTAT
*
10909622 TGCCTTTTAAAGGCAAAAATACAAA
129 TGCCATTTAAAGGCAAAAATACAAA
10909647 TTAAACTTTT
Statistics
Matches: 129, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
160 1 0.01
161 113 0.88
162 12 0.09
163 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (161 bp):
TATTGTTATATTTTAACAGTTTGGATAGTTTCAATACATGATATTAAACTTATCCAAAGTATTGA
ACTTAGTTTCTACGATTGATATGCATAAAAAAGTTATCATTTACATCGATTTAGGACTATTATTG
CCATTTAAAGGCAAAAATACAAAATTGTTGG
Found at i:10912650 original size:30 final size:29
Alignment explanation
Indices: 10912589--10912651 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
10912579 CATTAAATAA
* *
10912589 AAAATAATAATAATATATGAAAATAATTT
1 AAAATAATAATAATATATGAAAAAAAGTT
*
10912618 AAAATAATAA-AATATATATAAAAAAAGGTT
1 AAAATAATAATAATATAT-GAAAAAAA-GTT
10912648 AAAA
1 AAAA
10912652 AAATTTTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.24
29 16 0.55
30 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (29 bp):
AAAATAATAATAATATATGAAAAAAAGTT
Found at i:10914380 original size:61 final size:59
Alignment explanation
Indices: 10914294--10914467 Score: 185
Period size: 60 Copynumber: 2.9 Consensus size: 59
10914284 TTTTGTACAA
* *
10914294 GAAAATTTGATACTTTCAAC-TTTTCTCAAAAATATTTTTCTTGATAATTTTTA-TTCTTAAG
1 GAAAA-TTGATACTTTCAACTTTTTCTC-AAAATATTTTT-TTGAAAATTTTTATTTC-AAAG
* * * * *
10914355 GAAAATTGGTACTTCCAACTTTTTCTCAAAATGTTTTTTTTCTAAAATTTTAATTTCAAAG
1 GAAAATTGATACTTTCAACTTTTTCTCAAAAT-ATTTTTTT-GAAAATTTTTATTTCAAAG
* *
10914416 G-AAATTGATACTTTCAACTTTTTCTCAAAATA-CTTTTTGAGAATTTTTATTT
1 GAAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTTGAAAATTTTTATTT
10914468 TAGAAATTTT
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
57 11 0.12
58 5 0.05
60 47 0.49
61 29 0.31
62 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.48
Consensus pattern (59 bp):
GAAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTTGAAAATTTTTATTTCAAAG
Found at i:10914477 original size:14 final size:15
Alignment explanation
Indices: 10914450--10914482 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10914440 TCAAAATACT
*
10914450 TTTTGAGAATTTTTA
1 TTTTGAGAAATTTTA
10914465 TTTT-AGAAATTTTA
1 TTTTGAGAAATTTTA
10914479 TTTT
1 TTTT
10914483 CAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (15 bp):
TTTTGAGAAATTTTA
Found at i:10914615 original size:59 final size:57
Alignment explanation
Indices: 10914465--10914717 Score: 276
Period size: 57 Copynumber: 4.3 Consensus size: 57
10914455 AGAATTTTTA
** * *
10914465 TTTTAGAAATTTTATTTTCAAAAAAAATTGATACTTTGAACTTTTTCCT-AAAAATATTT
1 TTTTA-AAATTTTATTTTCAAAGGAAATTGATACTTTCAAC-TTTCCCTCAAAAATA-TT
* *
10914524 TTTTAAAACCTTTTTATTTTCAAGGGAAATTGATACTTTCAACTTTCCCCCAAAAACATATT
1 TTTTAAAA---TTTTATTTTCAAAGGAAATTGATACTTTCAACTTTCCCTC-AAAA-ATATT
** * * * *
10914586 TTTTTTATTTTTGTGTTT-AAAGGAAATTGATACATTCAACTTTCCTTCAAAAATATT
1 TTTTAAAATTTTAT-TTTCAAAGGAAATTGATACTTTCAACTTTCCCTCAAAAATATT
* *
10914643 TTTTAAAATTTTATTTTCAAAGAAAATTGATACTTTCAACTTTTCCTCAAAAATATT
1 TTTTAAAATTTTATTTTCAAAGGAAATTGATACTTTCAACTTTCCCTCAAAAATATT
10914700 TTTTGAAAATTTTATTTT
1 TTTT-AAAATTTTATTTT
10914718 AGGAAAATTA
Statistics
Matches: 163, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
56 3 0.02
57 54 0.33
58 20 0.12
59 36 0.22
60 8 0.05
61 28 0.17
62 11 0.07
63 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (57 bp):
TTTTAAAATTTTATTTTCAAAGGAAATTGATACTTTCAACTTTCCCTCAAAAATATT
Found at i:10914682 original size:116 final size:116
Alignment explanation
Indices: 10914489--10914703 Score: 294
Period size: 116 Copynumber: 1.8 Consensus size: 116
10914479 TTTTCAAAAA
* * * *
10914489 AAATTGATACTTTGAACTTTTTCCTAAAAATATTTTTTTAAAACCTTTTTATTTTCAAGGGAAAT
1 AAATTGATACATTCAACTTTTTCCTAAAAATATTTTTTTAAAA-C-TTTTATTTTCAAAGAAAAT
10914554 TGATACTTTCAACTTTCCCCCAAAAACATATTTTTTTTATTTTTGTGTTTAAAGG
64 TGATACTTTCAACTTTCCCCC-AAAA-ATATTTTTTTTATTTTTGTGTTTAAAGG
10914609 AAATTGATACATTCAAC--TTTCCTTCAAAAATA-TTTTTTAAAA-TTTTATTTTCAAAGAAAAT
1 AAATTGATACATTCAACTTTTTCC-T-AAAAATATTTTTTTAAAACTTTTATTTTCAAAGAAAAT
* *
10914670 TGATACTTTCAACTTTTCCTCAAAAATATTTTTT
64 TGATACTTTCAACTTTCCCCCAAAAATATTTTTT
10914704 GAAAATTTTA
Statistics
Matches: 87, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
114 9 0.10
115 4 0.05
116 36 0.41
118 5 0.06
119 11 0.13
120 22 0.25
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.46
Consensus pattern (116 bp):
AAATTGATACATTCAACTTTTTCCTAAAAATATTTTTTTAAAACTTTTATTTTCAAAGAAAATTG
ATACTTTCAACTTTCCCCCAAAAATATTTTTTTTATTTTTGTGTTTAAAGG
Found at i:10914737 original size:6 final size:6
Alignment explanation
Indices: 10914721--10914786 Score: 68
Period size: 6 Copynumber: 11.3 Consensus size: 6
10914711 TTATTTTAGG
* *
10914721 AAAATT AAAAATT AAAAATT -TAATT TAAATT AAAATT AAAATT AAAATT
1 AAAATT -AAAATT -AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
10914770 AAAA-T AAAA-- AAAATT AA
1 AAAATT AAAATT AAAATT AA
10914787 GGAATACCAA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.08
5 9 0.17
6 27 0.51
7 13 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:10915811 original size:44 final size:43
Alignment explanation
Indices: 10915709--10915926 Score: 221
Period size: 44 Copynumber: 5.0 Consensus size: 43
10915699 TTTTTTTAAT
* *
10915709 CAAAGCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAAATAAA
1 CAAAGCT-CTCTAAACAGAGGCTCAACGACTTT-AGAAAAATAAA
* *
10915754 CAAAGCTTCTCTAAATAGAGGCTCAACGAGTTTAGAAAAATAAA
1 CAAAGC-TCTCTAAACAGAGGCTCAACGACTTTAGAAAAATAAA
* *
10915798 CAAAGCTCATCTAAACAGAGGCTCAACGACTTTTGAAAAATGAA
1 CAAAGCTC-TCTAAACAGAGGCTCAACGACTTTAGAAAAATAAA
* *
10915842 CAAGGCTCTTCTAATA-AGAGGCTCAACGA-TTTTGAAAAAT-AA
1 CAAAGCTC-TCTAA-ACAGAGGCTCAACGACTTTAGAAAAATAAA
* * * *
10915884 -AATGCTCCTCTAAACAGAGGCACTACAACTTT-GAAAAAGTAAA
1 CAAAGCT-CTCTAAACAGAGGCTCAACGACTTTAGAAAAA-TAAA
10915927 TCGCTCTTTT
Statistics
Matches: 151, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
40 1 0.01
41 26 0.17
42 7 0.05
43 15 0.10
44 72 0.48
45 29 0.19
46 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.22
Consensus pattern (43 bp):
CAAAGCTCTCTAAACAGAGGCTCAACGACTTTAGAAAAATAAA
Found at i:10915947 original size:42 final size:40
Alignment explanation
Indices: 10915872--10916018 Score: 159
Period size: 42 Copynumber: 3.5 Consensus size: 40
10915862 GCTCAACGAT
* * *
10915872 TTTGAAAAATAAAATGCTCCTCTAAACAGAGGCACTACAAC
1 TTTGAAAAAT-AAATGCTCATATAAACAAAGGCACTACAAC
* * *
10915913 TTTGAAAAAGTAAATCGCTCTTTTAAACAAAGGCACCACAAC
1 TTTGAAAAA-TAAAT-GCTCATATAAACAAAGGCACTACAAC
* *
10915955 TTTGAAAAAATAAATTGCTCATATAAACAAAGGTACCTATAAC
1 TTTG-AAAAATAAA-TGCTCATATAAACAAAGGCA-CTACAAC
10915998 TTTGAAAAATAAAATGCTCAT
1 TTTGAAAAAT-AAATGCTCAT
10916019 TGACAATCAT
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
41 13 0.14
42 60 0.66
43 18 0.20
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.26
Consensus pattern (40 bp):
TTTGAAAAATAAATGCTCATATAAACAAAGGCACTACAAC
Found at i:10916521 original size:79 final size:79
Alignment explanation
Indices: 10916325--10916537 Score: 291
Period size: 79 Copynumber: 2.7 Consensus size: 79
10916315 GCTCATATTT
* * * ** *
10916325 GACAGATTTTAGGGTTTCACACCACAAAGATTTTCATTCAAAACTCAAAGATTCTCATTTGAGTT
1 GACAAATTTT-GGGTTTCACACCTCAAAGATTCTCATTTGAAACTCAAAAATTCTCATTTGAGTT
10916390 CAAAAATTCACATTC
65 CAAAAATTCACATTC
* * * *
10916405 AACAAATTTTGGGTTTCACACCTCAAAAATTCTCATTTGAAATTCAAATATTCTCATTTGAGTTC
1 GACAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAACTCAAAAATTCTCATTTGAGTTC
* *
10916470 GAAGATTCACATTC
66 AAAAATTCACATTC
*
10916484 GACAAATTTTGGGTTTTACACCTCAAAGATTCTCATTTGAGAACTCAAAAATTC
1 GACAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGA-AACTCAAAAATTC
10916538 AAAAGATTCC
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
79 97 0.84
80 19 0.16
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (79 bp):
GACAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAACTCAAAAATTCTCATTTGAGTTC
AAAAATTCACATTC
Done.