Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 59 of 138
Found at i:12318458 original size:9 final size:9
Alignment explanation
Indices: 12318439--12318469 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
12318429 AAAGTGCCAG
12318439 AGAACGTTGA
1 AGAA-GTTGA
12318449 AGAAGTTGA
1 AGAAGTTGA
12318458 AGAAGTTGA
1 AGAAGTTGA
12318467 AGA
1 AGA
12318470 GAAACCAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.45, C:0.03, G:0.32, T:0.19
Consensus pattern (9 bp):
AGAAGTTGA
Found at i:12327427 original size:7 final size:7
Alignment explanation
Indices: 12327415--12327440 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12327405 TTGATTGGAT
12327415 CGAAGTA
1 CGAAGTA
12327422 CGAAGTA
1 CGAAGTA
12327429 CGAAGTA
1 CGAAGTA
12327436 CGAAG
1 CGAAG
12327441 GGGTTGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.31, T:0.12
Consensus pattern (7 bp):
CGAAGTA
Found at i:12348003 original size:23 final size:23
Alignment explanation
Indices: 12347974--12348018 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
12347964 ACCCAAAGCA
12347974 GTGCAGTCTTTCCTGGCCAAATT
1 GTGCAGTCTTTCCTGGCCAAATT
12347997 GTGCAGTCTTTCCTGGCCAAAT
1 GTGCAGTCTTTCCTGGCCAAAT
12348019 CAAGGATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (23 bp):
GTGCAGTCTTTCCTGGCCAAATT
Found at i:12358443 original size:24 final size:25
Alignment explanation
Indices: 12358416--12358471 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
12358406 TCGTGATCCT
12358416 CTGACCATAAG-AACTCACGGTCCA
1 CTGACCATAAGCAACTCACGGTCCA
* * *
12358440 CTGACCA-ACGCAGCTCATGGTCCA
1 CTGACCATAAGCAACTCACGGTCCA
12358464 CTGACCAT
1 CTGACCAT
12358472 CTCGCTTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (25 bp):
CTGACCATAAGCAACTCACGGTCCA
Found at i:12358587 original size:19 final size:20
Alignment explanation
Indices: 12358554--12358596 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
12358544 CTTCGGCTTA
12358554 CACCCCCGCTGGGGCACCTG
1 CACCCCCGCTGGGGCACCTG
12358574 CACCCCCGCT-GGGCACCTG
1 CACCCCCGCTGGGGCACCTG
12358593 CACC
1 CACC
12358597 ATACAGCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.12, C:0.53, G:0.26, T:0.09
Consensus pattern (20 bp):
CACCCCCGCTGGGGCACCTG
Found at i:12377667 original size:18 final size:18
Alignment explanation
Indices: 12377641--12377745 Score: 76
Period size: 18 Copynumber: 6.1 Consensus size: 18
12377631 CTTTGTTCTT
12377641 GATACATTTGAGGTGGAG
1 GATACATTTGAGGTGGAG
* * *
12377659 GATATATTTGA---AGAT
1 GATACATTTGAGGTGGAG
*
12377674 GATACATTTGTGGTGGAG
1 GATACATTTGAGGTGGAG
* * * *
12377692 GGTACATTTGTGGT-AACT
1 GATACATTTGAGGTGGA-G
*
12377710 GATACATTTAAGGTGGAG
1 GATACATTTGAGGTGGAG
*
12377728 GATATATTTGAGG-GGAG
1 GATACATTTGAGGTGGAG
12377745 G
1 G
12377746 TTGGGGATAA
Statistics
Matches: 65, Mismatches: 17, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
15 11 0.17
17 6 0.09
18 47 0.72
19 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.34, T:0.32
Consensus pattern (18 bp):
GATACATTTGAGGTGGAG
Found at i:12377682 original size:33 final size:35
Alignment explanation
Indices: 12377640--12377738 Score: 121
Period size: 33 Copynumber: 2.9 Consensus size: 35
12377630 CCTTTGTTCT
12377640 TGATACATTTGAGGTGGAGGATATATTTGAAG-A-
1 TGATACATTTGAGGTGGAGGATATATTTGAAGAAC
* * * **
12377673 TGATACATTTGTGGTGGAGGGTACATTTGTGGTAAC
1 TGATACATTTGAGGTGGAGGATATATTTGAAG-AAC
*
12377709 TGATACATTTAAGGTGGAGGATATATTTGA
1 TGATACATTTGAGGTGGAGGATATATTTGA
12377739 GGGGAGGTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 27 0.51
35 1 0.02
36 25 0.47
ACGTcount: A:0.29, C:0.05, G:0.30, T:0.35
Consensus pattern (35 bp):
TGATACATTTGAGGTGGAGGATATATTTGAAGAAC
Found at i:12378142 original size:27 final size:27
Alignment explanation
Indices: 12378104--12378155 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
12378094 TCACACCATC
*
12378104 ACCATCACCATCATCA-TCTGGACTTAA
1 ACCACCACCATCATCACTCT-GACTTAA
12378131 ACCACCACCATCATCACTCTGACTT
1 ACCACCACCATCATCACTCTGACTT
12378156 GGTGCTGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.31, C:0.38, G:0.06, T:0.25
Consensus pattern (27 bp):
ACCACCACCATCATCACTCTGACTTAA
Found at i:12381041 original size:27 final size:27
Alignment explanation
Indices: 12380983--12381041 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
12380973 TCTACTCCTT
*
12380983 TACTCAGGAACTCTTCACGTGGTGGCA
1 TACTTAGGAACTCTTCACGTGGTGGCA
12381010 TACTTAGGAACTCTTCACGTGGTGGCA
1 TACTTAGGAACTCTTCACGTGGTGGCA
12381037 TACTT
1 TACTT
12381042 CCTATTTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (27 bp):
TACTTAGGAACTCTTCACGTGGTGGCA
Found at i:12381598 original size:26 final size:26
Alignment explanation
Indices: 12381549--12381597 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
12381539 TTTCAAAAAT
*
12381549 TAAAAGTTTTCAAACTTATATTTTAA
1 TAAAAGTTTTCAAACCTATATTTTAA
12381575 TAAAA-TTTTCAAACCTATATTTT
1 TAAAAGTTTTCAAACCTATATTTT
12381598 TTATTTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAAAGTTTTCAAACCTATATTTTAA
Found at i:12381845 original size:19 final size:20
Alignment explanation
Indices: 12381821--12381858 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12381811 AACAACAAAA
*
12381821 AAAATTA-AAATTCATATAC
1 AAAATTATAAATTAATATAC
12381840 AAAATTATAAATTAATATA
1 AAAATTATAAATTAATATA
12381859 TAACACAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAATTATAAATTAATATAC
Found at i:12382156 original size:39 final size:39
Alignment explanation
Indices: 12382124--12382204 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
12382114 AATCCCTTTC
*
12382124 CACCTTCCCCCCAACATCCCACCACACCCAATCCCTCCT
1 CACCTTCCCCCCAACACCCCACCACACCCAATCCCTCCT
** * *
12382163 CACCTTTTCCCCAACGCCCCACCACACCCAAT-CCTCCC
1 CACCTTCCCCCCAACACCCCACCACACCCAATCCCTCCT
12382201 CACC
1 CACC
12382205 CCATCCAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 9 0.24
39 28 0.76
ACGTcount: A:0.22, C:0.62, G:0.01, T:0.15
Consensus pattern (39 bp):
CACCTTCCCCCCAACACCCCACCACACCCAATCCCTCCT
Found at i:12388336 original size:2 final size:2
Alignment explanation
Indices: 12388329--12388353 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12388319 ATGCTGATCT
12388329 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12388354 TGCTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12407838 original size:45 final size:45
Alignment explanation
Indices: 12407742--12407849 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
12407732 GGCACATGTA
* * *
12407742 TCGACCATCATCGGCACAGGCTGCCCTTTGGTATGGGCACTTACC
1 TCGACCATCATCGACACAAGCTGCCCTTTGGTACGGGCACTTACC
* * *
12407787 TCGACCACCATCGACACAAGCTGGCCC-TTGGTACGGGTACTTGCC
1 TCGACCATCATCGACACAAGCT-GCCCTTTGGTACGGGCACTTACC
* *
12407832 TTGACCATCATCAACACA
1 TCGACCATCATCGACACA
12407850 TGCATGCCTC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 49 0.92
46 4 0.08
ACGTcount: A:0.22, C:0.34, G:0.21, T:0.22
Consensus pattern (45 bp):
TCGACCATCATCGACACAAGCTGCCCTTTGGTACGGGCACTTACC
Found at i:12408135 original size:44 final size:45
Alignment explanation
Indices: 12408087--12408171 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
12408077 ACACATGTTG
** * *
12408087 GGCCTTT-GTGCGGGCGGTTGCCTCGAGCACCATTGACACAAGCC
1 GGCCTTTGGTGCGGGCACTTACCTCGACCACCATTGACACAAGCC
* *
12408131 GGCCTTTGGTGGGGGCACTTACCTCGACCACCATTGGCACA
1 GGCCTTTGGTGCGGGCACTTACCTCGACCACCATTGACACA
12408172 TGCCATGTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 7 0.21
45 27 0.79
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.21
Consensus pattern (45 bp):
GGCCTTTGGTGCGGGCACTTACCTCGACCACCATTGACACAAGCC
Found at i:12408258 original size:45 final size:45
Alignment explanation
Indices: 12408209--12408389 Score: 182
Period size: 45 Copynumber: 4.0 Consensus size: 45
12408199 AGATGGCCCA
* * *
12408209 TGGTGCAGGCGGTTGCATCAAACACCATCGGCACATGCTAGGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * *
12408254 TGGTGCAAGCGGTTACTTCGAACACCATCAGCACATGCTGGGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
*** * ** * * * * *
12408299 TGGTATGGGCGGTTGCCTCGATCACCATCGATAAAAGATTGCCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* *
12408344 TGGTGCAGGTGGTTGCCTTGAACACCATCGGCACATGCTGGGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
12408389 T
1 T
12408390 CGTGTGGGCA
Statistics
Matches: 102, Mismatches: 34, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
45 102 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (45 bp):
TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
Found at i:12416632 original size:26 final size:26
Alignment explanation
Indices: 12416596--12416648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12416586 CCGATCCGAT
*
12416596 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12416622 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12416648 C
1 C
12416649 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12418358 original size:45 final size:45
Alignment explanation
Indices: 12418292--12418432 Score: 165
Period size: 45 Copynumber: 3.1 Consensus size: 45
12418282 GCCCCTGCTA
** * * *
12418292 CGGGCAGTTATATCAAACACCATCGACATATGCTGGGCCTTAGTG
1 CGGGCAGTTACCTCGAACACCATCGACATATGCTAGGCCTTGGTG
* * *
12418337 CGGGCAGTTACCTCGATCACCATCGACACATGGTAGGCCTTGGTG
1 CGGGCAGTTACCTCGAACACCATCGACATATGCTAGGCCTTGGTG
* * * *
12418382 CGGGCGGTTGCCTTGAACACCATCGACATATTCTAGGCCTTGGTG
1 CGGGCAGTTACCTCGAACACCATCGACATATGCTAGGCCTTGGTG
*
12418427 TGGGCA
1 CGGGCA
12418433 CATGCCTCAA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (45 bp):
CGGGCAGTTACCTCGAACACCATCGACATATGCTAGGCCTTGGTG
Found at i:12418439 original size:45 final size:45
Alignment explanation
Indices: 12418307--12418496 Score: 168
Period size: 45 Copynumber: 4.2 Consensus size: 45
12418297 AGTTATATCA
* * *
12418307 AACACCATCGACATATGCTGGGCCTTAGTGCGGGCAGTTACCTCG
1 AACACCATCGACATATGCTAGGCCTTGGTGCGGGCAGTTGCCTCG
* * * * *
12418352 ATCACCATCGACACATGGTAGGCCTTGGTGCGGGCGGTTGCCTTG
1 AACACCATCGACATATGCTAGGCCTTGGTGCGGGCAGTTGCCTCG
* * **
12418397 AACACCATCGACATATTCTAGGCCTTGGTGTGGGCACATGCCTC-
1 AACACCATCGACATATGCTAGGCCTTGGTGCGGGCAGTTGCCTCG
* * * * * * *
12418441 AACCACCATCGGCACAAGC-CGGCCCTTGGTGCGAGCACTTGCCTTG
1 AA-CACCATCGACATATGCTAGG-CCTTGGTGCGGGCAGTTGCCTCG
*
12418487 ATCACCATCG
1 AACACCATCG
12418497 GCACATGCCA
Statistics
Matches: 115, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 4 0.03
45 110 0.96
46 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (45 bp):
AACACCATCGACATATGCTAGGCCTTGGTGCGGGCAGTTGCCTCG
Found at i:12418448 original size:90 final size:90
Alignment explanation
Indices: 12418307--12418496 Score: 211
Period size: 90 Copynumber: 2.1 Consensus size: 90
12418297 AGTTATATCA
* ** * * * *
12418307 AACACCATCGACATATGCTGGGCCTTAGTGCGGGCAGTTACCTCGATCACCATCGACACATGGTA
1 AACACCATCGACATATGCTAGGCCTTAGTGCGGGCACATACCTCAACCACCATCGACACA-AGCA
* **
12418372 GG-CCTTGGTGCGGGCGGTTGCCTTG
65 GGCCCTTGGTGCGAGCACTTGCCTTG
* * * * * *
12418397 AACACCATCGACATATTCTAGGCCTTGGTGTGGGCACATGCCTCAACCACCATCGGCACAAGCCG
1 AACACCATCGACATATGCTAGGCCTTAGTGCGGGCACATACCTCAACCACCATCGACACAAGCAG
12418462 GCCCTTGGTGCGAGCACTTGCCTTG
66 GCCCTTGGTGCGAGCACTTGCCTTG
*
12418487 ATCACCATCG
1 AACACCATCG
12418497 GCACATGCCA
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 3 0.04
90 79 0.96
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (90 bp):
AACACCATCGACATATGCTAGGCCTTAGTGCGGGCACATACCTCAACCACCATCGACACAAGCAG
GCCCTTGGTGCGAGCACTTGCCTTG
Found at i:12424058 original size:197 final size:196
Alignment explanation
Indices: 12423706--12424101 Score: 447
Period size: 197 Copynumber: 2.0 Consensus size: 196
12423696 TCTAACAAGG
* * *
12423706 GCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTAAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTAAG
* * * * *
12423771 CTGACTAGAAGGTAGAGTGCATAAGCTAAGGATCAGCCCGGTCCCCCTCTACGTGCTGCCCCAAT
66 CAGACCAGAAGGCAGAATGCATAAGCTAAGGATCAGCCCGATCCCCCTCTACGTGCTG-CCCAAT
** * * ** * ** *
12423836 TGGGCTGTGGGTCCTATTGCACAACCCTCGGTCC-AGTGTGATCTTAGACTGGGAATGAACTCCA
130 CCGGCTGCGAGTCCTATACCACAACCCTCGATCCGA-TCAGAGCTTAGACTGGGAATGAACTCCA
12423900 TAT
194 TAT
** * *
12423903 GCTTAGACTAGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCTTGCGGGCACTAAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTAAG
* * * *
12423968 TCAG-CCAGAGAGGCAGAATGCATAAGCTGAGGATCGGCCCGATCCCCCTCTACGTGCTG-TCGA
66 -CAGACCAGA-AGGCAGAATGCATAAGCTAAGGATCAGCCCGATCCCCCTCTACGTGCTGCCCAA
* * * * *
12424031 TCCTGCTGCGAGTCCTGCTACCACAACCCTTGATCCGATCAGAGCTTAGACTGGGAATGAATTCT
129 TCCGGCTGCGAGTCCT-ATACCACAACCCTCGATCCGATCAGAGCTTAGACTGGGAATGAACTCC
12424096 ATAT
193 ATAT
12424100 GC
1 GC
12424102 CTAAGTCAAC
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
196 13 0.08
197 104 0.63
198 47 0.29
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (196 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCACTAAG
CAGACCAGAAGGCAGAATGCATAAGCTAAGGATCAGCCCGATCCCCCTCTACGTGCTGCCCAATC
CGGCTGCGAGTCCTATACCACAACCCTCGATCCGATCAGAGCTTAGACTGGGAATGAACTCCATA
T
Found at i:12424570 original size:149 final size:148
Alignment explanation
Indices: 12424267--12424597 Score: 396
Period size: 149 Copynumber: 2.2 Consensus size: 148
12424257 TGAACTCCGT
* * * * ** **
12424267 ATGCCAA-AGCCATTTTTGTGGCTCATGAATTCATATGAGCCCTCCCCAATGCCCGTGCACCACG
1 ATGCCAATA-CCATTTTTATGGCT-GTGAATTCACATGAGCACTCCCCAACACCCGCACACCACG
* * * *
12424331 CGTGGGTGTCCTGAGCCCGGGTCGAGCACCAATGCGGGCCACGATCGGGTGGTAGGTGGGTTTAG
64 CGTGAGTGTCCTGAGCCCAGGCCGAGCACCAATGCGCGCCACGATCGGGTGGTAGGTGGGTTTAG
***
12424396 GCACATCTTCATATTTTGTT
129 GCACATCTTCATATTTTACC
* *
12424416 GTGCCAATACCATTTTTATGGCATGTGAATTCACATGAGCACTCCCCAGCACCCGCACACCACGC
1 ATGCCAATACCATTTTTATGGC-TGTGAATTCACATGAGCACTCCCCAACACCCGCACACCACGC
* * *
12424481 GTGAGTGTGCTGAGCCCAGGCCGAGCACC-ATGCGCGCCGCGATCGGGTGGTAGGTTGGTTTAGG
65 GTGAGTGTCCTGAGCCCAGGCCGAGCACCAATGCGCGCCACGATCGGGTGGTAGGTGGGTTTAGG
*
12424545 TACATCTTCATATTTCTACC
130 CACATCTTCATATTT-TACC
* *
12424565 ATGCCAATGCCATTTTTATGGCTTGTAAATTCA
1 ATGCCAATACCATTTTTATGGC-TGTGAATTCA
12424598 TACAATGGTC
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
148 46 0.30
149 106 0.69
150 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.27
Consensus pattern (148 bp):
ATGCCAATACCATTTTTATGGCTGTGAATTCACATGAGCACTCCCCAACACCCGCACACCACGCG
TGAGTGTCCTGAGCCCAGGCCGAGCACCAATGCGCGCCACGATCGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTTACC
Found at i:12425266 original size:18 final size:18
Alignment explanation
Indices: 12425243--12425282 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
12425233 ATCGGCATAG
12425243 GCCTTGGTGCGAGCACAT
1 GCCTTGGTGCGAGCACAT
12425261 GCCTTGGTGCGAGCACAT
1 GCCTTGGTGCGAGCACAT
12425279 GCCT
1 GCCT
12425283 CGACCACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.23
Consensus pattern (18 bp):
GCCTTGGTGCGAGCACAT
Found at i:12427147 original size:45 final size:45
Alignment explanation
Indices: 12427052--12427140 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
12427042 TGCGGGCGGT
* ** * * *
12427052 TGCCTCAACCACCATCGGCACGTGTTGGGCCTTGGTGCGGGCACA
1 TGCCTCAACCACCATCAGCACAAGCTGGCCCTTAGTGCGGGCACA
*
12427097 TGCCTCAACCACCATCAGCACAAGCTGGCCCTTAGTGTGGGCAC
1 TGCCTCAACCACCATCAGCACAAGCTGGCCCTTAGTGCGGGCAC
12427141 TCGCCTCGAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.19, C:0.35, G:0.27, T:0.19
Consensus pattern (45 bp):
TGCCTCAACCACCATCAGCACAAGCTGGCCCTTAGTGCGGGCACA
Found at i:12429528 original size:158 final size:158
Alignment explanation
Indices: 12429237--12429538 Score: 378
Period size: 158 Copynumber: 1.9 Consensus size: 158
12429227 CAGTCCTGTT
* * *
12429237 GGGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATAAGCATGCAGGCACTA
1 GGGCTTAGACTAGGAATGAACTCCGTATACCTAACTCAACCCACGAAACAAGCATGCAGGCACTA
* * * *** *
12429302 AGCCGACCATAGAGGTAGAATGCATAAGTCGAGGATCGACCCGATCCCCCTCTGTGTGCTGTAGA
66 AGCAGACCAGAGAGGTAGAATGCATAAGTCGAGGATCGACCAGATCCCCCTCTACATGCTGCAGA
* *
12429367 TCCTTCTATGGGTCTTTCGGTCTGGCTA
131 TCCTACTACGGGTCTTTCGGTCTGGCTA
* * *
12429395 GGGCTTAGACTAGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATGC-GTGCACT
1 GGGCTTAGACTAGGAATGAACTCCGTATACCTAACTCAACCCACGAAACAAGCATGCAG-GCACT
* * *
12429459 GAGTCAG-CCAGAGAGGTAGGATGCATAAGTTGAGGATCGACCTAG-TCCCCCTCTACATGCTGC
65 AAG-CAGACCAGAGAGGTAGAATGCATAAGTCGAGGATCGACC-AGATCCCCCTCTACATGCTG-
12429522 CA-ATCCTACTACGGGTC
127 CAGATCCTACTACGGGTC
12429539 GTATTGCCAC
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 117 0.96
159 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (158 bp):
GGGCTTAGACTAGGAATGAACTCCGTATACCTAACTCAACCCACGAAACAAGCATGCAGGCACTA
AGCAGACCAGAGAGGTAGAATGCATAAGTCGAGGATCGACCAGATCCCCCTCTACATGCTGCAGA
TCCTACTACGGGTCTTTCGGTCTGGCTA
Found at i:12431091 original size:90 final size:90
Alignment explanation
Indices: 12430985--12431355 Score: 262
Period size: 90 Copynumber: 4.1 Consensus size: 90
12430975 TGTGGTTACC
* * * * * *
12430985 TCGAATACCATCGGCACATGCTGGGCCTTGGTGCGGGTGGTTACCTCGAACAACATCGGCACGTG
1 TCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGAG
* * * * *
12431050 CTGGCCTTTGGTGTAGGCACATGCC
66 ATGGCCTCTGGTGCAGGCAGATGCA
* * ** * ** * * * *
12431075 TCGACCACCATCGGCACAAGCCAGCCCTTGGTGCAGGCACTTGCCTCGACCATCATGGGTA-GAA
1 TCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACG-A
*** *
12431139 GATGGCCTCTGGTGCAGATGGTTGCA
65 GATGGCCTCTGGTGCAGGCAGATGCA
* * * * * ** **
12431165 TCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGGTGGTTGCTTCGATCACCATCGATAAAAG
1 TCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGAG
* ***
12431230 ATGGCCCCTGGTATGGGC-GATTGCA
66 ATGGCCTCTGGTGCAGGCAGA-TGCA
* * * * *
12431255 TCGAACACCATCGGCACATGCTGGGCCTTGGTACAGGCGATTGCCTCAAACACCATCAGCACGTG
1 TCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGAG
* * *
12431320 CTGAGCCT-TGGTGCGGGCAGATGCC
66 ATG-GCCTCTGGTGCAGGCAGATGCA
*
12431345 TCGACCACCAT
1 TCGAACACCAT
12431356 TGGTGCATGC
Statistics
Matches: 208, Mismatches: 68, Indels: 10
0.73 0.24 0.03
Matches are distributed among these distances:
89 2 0.01
90 201 0.97
91 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (90 bp):
TCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGAACACCATCGGCACGAG
ATGGCCTCTGGTGCAGGCAGATGCA
Found at i:12431207 original size:45 final size:45
Alignment explanation
Indices: 12430968--12431355 Score: 231
Period size: 45 Copynumber: 8.6 Consensus size: 45
12430958 AGATGGTCCC
* * * *
12430968 TGGTGCATGTGGTTACCTCGAATACCATCGGCACATGCTGGGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * * *
12431013 TGGTGCGGGTGGTTACCTCGAACAACATCGGCACGTGCT-GGCCTT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCC-T
* *** * * ** *
12431058 TGGTGTAGGCACATGCCTCGACCACCATCGGCACAAGCCAGCCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
** * * * * * * *
12431103 TGGTGCAGGCACTTGCCTCGACCATCATGGGTAGAAGAT-GGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
** * *
12431147 CTGGTGCAGATGGTTGCATCAAACACCATCGGCACATGCTGGGCCT
1 -TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * * ** * * * * *
12431193 TGGTGCGGGTGGTTGCTTCGATCACCATCGATAAAAGATGGCCCC
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
*** * *
12431238 TGGTATGGGCGATTGCATCGAACACCATCGGCACATGCTGGGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * * * *
12431283 TGGTACAGGCGATTGCCTCAAACACCATCAGCACGTGCTGAGCCT
1 TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * *
12431328 TGGTGCGGGCAGATGCCTCGACCACCAT
1 TGGTGCAGGCGGTTGCCTCGAACACCAT
12431356 TGGTGCATGC
Statistics
Matches: 260, Mismatches: 79, Indels: 8
0.75 0.23 0.02
Matches are distributed among these distances:
44 8 0.03
45 244 0.94
46 8 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (45 bp):
TGGTGCAGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
Found at i:12431286 original size:180 final size:180
Alignment explanation
Indices: 12430957--12431301 Score: 392
Period size: 180 Copynumber: 1.9 Consensus size: 180
12430947 ACATCAGTAA
* * *
12430957 AAGATGGTCCCTGGTGCATGTGGTTACCTCGAATACCATCGGCACATGCTGGGCCTTGGTGCGGG
1 AAGATGGTCCCTGGTGCATGTGGTTACATCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGG
* *** * ** * * *
12431022 TGGTTACCTCGAACAACATCGGCACGTGCTGGCCTTTGGTGTAGGCACATGCCTCGACCACCATC
66 TGGTTACCTCGAACAACATCGACAAAAGATGGCCCCTGGTATAGGCACATGCATCGAACACCATC
*
12431087 GGCACAAGCCAGCCCTTGGTGCAGGC-ACTTGCCTCGACCATCATGGGTAG
131 GGCACAAGCCAGCCCTTGGTACAGGCGA-TTGCCTCGACCATCATGGGTAG
*
12431137 AAGATGG-CCTCTGGTGCA-GATGGTTGCATCAAACACCATCGGCACATGCTGGGCCTTGGTGCG
1 AAGATGGTCC-CTGGTGCATG-TGGTTACATCAAACACCATCGGCACATGCTGGGCCTTGGTGCG
* * * * * * *
12431200 GGTGGTTGCTTCGATCACCATCGATAAAAGATGGCCCCTGGTATGGGCGA-TTGCATCGAACACC
64 GGTGGTTACCTCGAACAACATCGACAAAAGATGGCCCCTGGTATAGGC-ACATGCATCGAACACC
* ** *
12431264 ATCGGCACATGCTGGGCCTTGGTACAGGCGATTGCCTC
128 ATCGGCACAAGCCAGCCCTTGGTACAGGCGATTGCCTC
12431302 AAACACCATC
Statistics
Matches: 135, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
179 3 0.02
180 130 0.96
181 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (180 bp):
AAGATGGTCCCTGGTGCATGTGGTTACATCAAACACCATCGGCACATGCTGGGCCTTGGTGCGGG
TGGTTACCTCGAACAACATCGACAAAAGATGGCCCCTGGTATAGGCACATGCATCGAACACCATC
GGCACAAGCCAGCCCTTGGTACAGGCGATTGCCTCGACCATCATGGGTAG
Found at i:12444358 original size:45 final size:45
Alignment explanation
Indices: 12444309--12444400 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
12444299 GTGCCCATAG
* *
12444309 CAAGGGCTAGCACGTG-CTAATGGTGGTCGACGCGACTGCCCGCAC
1 CAAGGGCCAGCACGTGTC-AATGGTGGTCGACGCAACTGCCCGCAC
** * * *
12444354 CAAGGGCCAGCGTGTGTCGATGGTGGTCGAGGCAACTGCCTGCAC
1 CAAGGGCCAGCACGTGTCAATGGTGGTCGACGCAACTGCCCGCAC
12444399 CA
1 CA
12444401 GATCGAGGCA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (45 bp):
CAAGGGCCAGCACGTGTCAATGGTGGTCGACGCAACTGCCCGCAC
Found at i:12444540 original size:45 final size:45
Alignment explanation
Indices: 12444471--12445151 Score: 435
Period size: 45 Copynumber: 15.1 Consensus size: 45
12444461 CATCTTCTAT
* * ** * **
12444471 CGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGCCCAGCACGTGC
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* ** *
12444516 CGATGGTGTTCGAGGTAACCGCCCGTACCAAAGTCCAGCGTGTGC
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * *
12444561 CGATGGTGATCGAGGAAACCACCCGCACCAGGGCCTAGCGTGTGC
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * * * *
12444606 CAATGGTGTTCGACGTAACCGCCCGCACCAAGTG-CAATCTTCTGC
1 CGATGGTGTTCGAGGTAACCGCCCGCACC-AGGGCCCAGCGTGTGC
* * * * * * *
12444651 TGATGGTGCTCAAGGTAACTGCCCGCACTAGGGCTCAGCGTGTGT
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * ***
12444696 CGATAGTGTTCGAGGCAACTGCCCGTACCAGGGCCCAGCACATGC
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * *
12444741 CAATGGTGTTTGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGG
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * *
12444786 TGATGGTGATCGAGGTAACTGCCTGCACCAGGGCCCAGCGTGTGT
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * ** *
12444831 CGATGGTGTTC-AGCGCAATCGCCTACACC-GGAGCCCAGCGTGTCC
1 CGATGGTGTTCGAG-GTAACCGCCCGCACCAGG-GCCCAGCGTGTGC
* * * * **
12444876 CGATGGTGTTCGACGTAACCGCCCGCACCAGAGG-CCATCTTCTTT
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAG-GGCCCAGCGTGTGC
* * * *
12444921 CAATGGTGGTT-AAGGTAATCGCCCGCACCAGGGCCCAGCATGTGC
1 CGATGGT-GTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * ** * * * * * *
12444966 CAATGGTGCTCGATGCAACAACCTGCACCATGACCTAGCATGTGT
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
* * * * *
12445011 CGATGGTGGTCGAGGTAATCGCCCGCACTAAGGG-CC-GCCTTGTGT
1 CGATGGTGTTCGAGGTAACCGCCCGCAC-CAGGGCCCAG-CGTGTGC
* * * *
12445056 TGATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAGCATAG-GC
1 CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGT-GTGC
* * * * *
12445101 CGATGGTGATT-GAGGTAACCACTCGTACCAGGGCCCAGCTTGTGT
1 CGATGGTG-TTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
12445146 CGATGG
1 CGATGG
12445152 CAGTCGAGAC
Statistics
Matches: 481, Mismatches: 138, Indels: 34
0.74 0.21 0.05
Matches are distributed among these distances:
44 16 0.03
45 450 0.94
46 14 0.03
47 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
CGATGGTGTTCGAGGTAACCGCCCGCACCAGGGCCCAGCGTGTGC
Found at i:12444709 original size:135 final size:135
Alignment explanation
Indices: 12444517--12445144 Score: 482
Period size: 135 Copynumber: 4.7 Consensus size: 135
12444507 AGCACGTGCC
* * * * ** * * *
12444517 GATGGTGTTCGAGGTAACCGCCCGTACCAAAGTCCAGCGTGTGCCGATGGTGATCGAGGAAACCA
1 GATGGTGGTCAAGGTAACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGAGGCAACCA
* * *
12444582 CCCGCACCAGGGCCTAGCGTGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAGTGCAATCTT
66 CCCGCACCAGGGCCCAGCATGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAGGGCAATCTT
*
12444647 CTGCT
131 CTGTT
* * * * * **
12444652 GATGGTGCTCAAGGTAACTGCCCGCACTAGGGCTCAGCGTGTGTCGATAGTGTTCGAGGCAACTG
1 GATGGTGGTCAAGGTAACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGAGGCAACCA
* ** * * *
12444717 CCCGTACCAGGGCCCAGCACATGCCAATGGTGTTTGAGGCAACCGCCCGCACC-AGGGCCCAA-C
66 CCCGCACCAGGGCCCAGCATGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAGGG--CAATC
* * *
12444780 GTGTGGT
129 TTCTGTT
* * * * *
12444787 GATGGTGATCGAGGTAACTGCCTGCACCAGGGCCCAGCGTGTGTCGATGGTGTTC-AGCGCAATC
1 GATGGTGGTCAAGGTAACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGAG-GCAACC
* ** * * * *
12444851 GCCTACACC-GGAGCCCAGCGTGTCCCGATGGTGTTCGACGTAACCGCCCGCACC-AGAGGCCAT
65 ACCCGCACCAGG-GCCCAGCATGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAG-GGCAAT
12444914 CTTCT-TT
128 CTTCTGTT
* * * * * *
12444921 CAATGGTGGTTAAGGTAA-TCGCCCGCACCAGGGCCCAGCATGTGCCAATGGTGCTCGATGCAAC
1 -GATGGTGGTCAAGGTAACT-GCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGAGGCAAC
* * * * * * * * * * * ***
12444985 AACCTGCACCATGACCTAGCATGTGTCGATGGTGGTCGAGGTAATCGCCCGCACTAAGGGCCGCC
64 CACCCGCACCAGGGCCCAGCATGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAGGGCAATC
*
12445050 TTGTGTT
129 TTCTGTT
* * * * *
12445057 GATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAGCATAG-GCCGATGGTGATT-GAGGTAAC
1 GATGGTGGTCAAGGTAACTGCCCGCACCAGGGCCCAGCGT-GTGCCGATGGTG-TTCGAGGCAAC
* * *
12445120 CACTCGTACCAGGGCCCAGCTTGTG
64 CACCCGCACCAGGGCCCAGCATGTG
12445145 TCGATGGCAG
Statistics
Matches: 384, Mismatches: 94, Indels: 30
0.76 0.19 0.06
Matches are distributed among these distances:
134 11 0.03
135 360 0.94
136 13 0.03
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (135 bp):
GATGGTGGTCAAGGTAACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGAGGCAACCA
CCCGCACCAGGGCCCAGCATGTGCCAATGGTGTTCGACGTAACCGCCCGCACCAAGGGCAATCTT
CTGTT
Found at i:12446156 original size:26 final size:26
Alignment explanation
Indices: 12446116--12446171 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
12446106 TGGGTTGACT
* *
12446116 TAAGCATACAAAGTTTATTCTCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
** *
12446142 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAATC
12446168 TAAG
1 TAAG
12446172 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:12446308 original size:197 final size:197
Alignment explanation
Indices: 12445948--12446327 Score: 433
Period size: 197 Copynumber: 1.9 Consensus size: 197
12445938 GTTGACTTAG
* * * **
12445948 GCATACGGAGTTCATTCCCAGTCTGAGATTGGACCGAACCAAGGGTTGCGGTAGCAGGACCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAGGACCTGCA
* ** * * *
12446013 GCGGGATCGACTACACGTAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTACCTCTATGG
66 GCGGGATAGACTACACACAGAGGGGGATCGGGCCGATCCCCAACTTCCGCATCCTACCTCTATGA
12446078 TCAACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAAGCATACAAAGTTTATTCTCAATCT
131 TCAACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAAGCATACAAAGTTTATTCTCAATCT
12446143 AA
196 AA
* **
12446145 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCAGGACC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAGGACCTG-C
* * * ** * ** *
12446209 AGCGGGATAGGCTGCACACAG-GAGGGGATTGGGTTGATCCTCGGCTTCCGCATCCTGCCTCT-T
65 AGCGGGATAGACTACACACAGAG-GGGGATCGGGCCGATCCCCAACTTCCGCATCCTACCTCTAT
* * * * * * * *
12446272 CGATCGACTGAGTGCCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
129 -GATCAACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAAGCATACAAAGTT
12446328 CATACCATGT
Statistics
Matches: 149, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
196 3 0.02
197 146 0.98
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (197 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGACAGCAGGACCTGCA
GCGGGATAGACTACACACAGAGGGGGATCGGGCCGATCCCCAACTTCCGCATCCTACCTCTATGA
TCAACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAAGCATACAAAGTTTATTCTCAATCT
AA
Found at i:12452769 original size:45 final size:45
Alignment explanation
Indices: 12452674--12452842 Score: 176
Period size: 45 Copynumber: 3.8 Consensus size: 45
12452664 CGTGACACCT
* * * * * ** *
12452674 GCACCATGGCCCAACATTTGTCGATGGTAATCGAGGTGACCACCC
1 GCACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCC
* * *
12452719 GCACCAGGGCCCAGCATTTGCTGATGGTGATCGAGGCCACCGCCC
1 GCACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCC
* * * *
12452764 ACACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCTC
1 GCACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCC
* * *
12452809 GCACCAGGGCCTAGCGTGTACCGATGGTGATCGA
1 GCACCAGGGCCCAGCATGTGCCGATGGTGATCGA
12452843 CCAGTGTGTG
Statistics
Matches: 105, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.17
Consensus pattern (45 bp):
GCACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCC
Found at i:12452896 original size:69 final size:69
Alignment explanation
Indices: 12452774--12452911 Score: 170
Period size: 69 Copynumber: 2.0 Consensus size: 69
12452764 ACACCAGGGC
* * *
12452774 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCTCGCACCAGGGCCTAGCGTGTACCGATGGTGA
1 CCAGCGTGTGCCGATGGTGCTCAAGGCAACCGCTCGCACCAGGGCCCAACGTGTACCGATGGTGA
12452839 TCGA
66 TCGA
* * * * * *
12452843 CCAGTGTGTGCCGATGGTGTTCAAGGCAACTGC-CTGCATCGGGGCCCAACGTGTGCCGATGGTG
1 CCAGCGTGTGCCGATGGTGCTCAAGGCAACCGCTC-GCACCAGGGCCCAACGTGTACCGATGGTG
*
12452907 CTCGA
65 ATCGA
12452912 GGCGACCGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 1 0.02
69 57 0.98
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.20
Consensus pattern (69 bp):
CCAGCGTGTGCCGATGGTGCTCAAGGCAACCGCTCGCACCAGGGCCCAACGTGTACCGATGGTGA
TCGA
Found at i:12452933 original size:45 final size:45
Alignment explanation
Indices: 12452843--12453161 Score: 253
Period size: 45 Copynumber: 7.1 Consensus size: 45
12452833 TGGTGATCGA
* * * * * * * * *
12452843 CCAGTGTGTGCCGATGGTGTTCAAGGCAACTGCCTGCATCGGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
* *
12452888 CCAACGTGTGCCGATGGTGCTCGAGGCGACCGCCCGTACCAGGGCC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGG-C
* ** * * * * *
12452934 CCA-CGAGTGTTGATGGTGCTTGAGGCGACCACCCGTACCACGAC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
* * * * *
12452978 CCAGCGTGCGCCGATGGTGATCGAGGTGACTGCTCGCACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
* * ** * * *
12453023 CCAGTGTGTGTCGATCATGATCGCGGCGACCACCCATACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
* * * **
12453068 CCAGCGTGTGCCAATAGTGATCGAGGCCACCATCCGTACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
* * * * *
12453113 CCAGCGTGTGCCGATGGTGCTCGAGGCCACCGCCTGCACTAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
12453158 CCAG
1 CCAG
12453162 AATGCGTCGA
Statistics
Matches: 213, Mismatches: 59, Indels: 4
0.77 0.21 0.01
Matches are distributed among these distances:
44 4 0.02
45 205 0.96
46 4 0.02
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (45 bp):
CCAGCGTGTGCCGATGGTGATCGAGGCGACCGCCCGTACCAGGGC
Found at i:12453271 original size:114 final size:113
Alignment explanation
Indices: 12453105--12453364 Score: 297
Period size: 114 Copynumber: 2.3 Consensus size: 113
12453095 CACCATCCGT
* * * * * *
12453105 ACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCCACCGCCTGCACTAGGGCCCAGAATGCGTC
1 ACCAGGGCCCAACGTGTGCCGATGGTGCTCGAGGCAACCACCCGCACCAGGGCCCAGAATGCGCC
* * * * * *
12453170 GATGGTGATTGACCAGCGTGTGTCGATGGTGATCAAGGCTACCGCCTGC
66 GATAGTGATCGACCAGC-TCTGCCGATGGTGATCAAGGCAACCGCCCGC
* * * * ** *
12453219 ACTAGGGCCCAACGTGTGTCGATGGTGCTTGAGGCAAGCACCCGCACCAGGGCCCAGCTTGTGCC
1 ACCAGGGCCCAACGTGTGCCGATGGTGCTCGAGGCAACCACCCGCACCAGGGCCCAGAATGCGCC
* *
12453284 GATAGTGATCGACCAGCTCTGCCGATGGTGTTCGAGGCAACCGCCCGC
66 GATAGTGATCGACCAGCTCTGCCGATGGTGATCAAGGCAACCGCCCGC
*
12453332 ACCAGGG-CCAATCGTGTGCCGATGGTGATCGAG
1 ACCAGGGCCCAA-CGTGTGCCGATGGTGCTCGAG
12453365 CTGATCGCTC
Statistics
Matches: 120, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
112 4 0.03
113 49 0.41
114 67 0.56
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (113 bp):
ACCAGGGCCCAACGTGTGCCGATGGTGCTCGAGGCAACCACCCGCACCAGGGCCCAGAATGCGCC
GATAGTGATCGACCAGCTCTGCCGATGGTGATCAAGGCAACCGCCCGC
Found at i:12453381 original size:45 final size:45
Alignment explanation
Indices: 12453332--12453499 Score: 141
Period size: 45 Copynumber: 3.7 Consensus size: 45
12453322 AACCGCCCGC
12453332 ACCAGGG-CCAATCGTGTGCCGATGGTGATCGAGCTGATCGCTCGT
1 ACCAGGGCCCAATCGTGTGCCGATGGTGATCGAGCTGATCGC-CGT
* * * * * *
12453377 ACCAGGGCCCAA-CGTGTGTCGAAGGTGCTCGAGGTGACCGGCCGC
1 ACCAGGGCCCAATCGTGTGCCGATGGTGATCGAGCTGATC-GCCGT
* * *
12453422 ACCAGGGCCCAGT-GTGTGTCGATGGTGCTCGAGGCCT--TCCGCCCGT
1 ACCAGGGCCCAATCGTGTGCCGATGGTGATCGA-G-CTGAT-CG-CCGT
* *
12453468 ACCAAGGCCC-AGCGTGTGCCGATGGTGATCGA
1 ACCAGGGCCCAATCGTGTGCCGATGGTGATCGA
12453500 CCAGCATGTG
Statistics
Matches: 99, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
45 61 0.62
46 37 0.37
47 1 0.01
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.18
Consensus pattern (45 bp):
ACCAGGGCCCAATCGTGTGCCGATGGTGATCGAGCTGATCGCCGT
Found at i:12453558 original size:69 final size:69
Alignment explanation
Indices: 12453468--12453635 Score: 309
Period size: 69 Copynumber: 2.4 Consensus size: 69
12453458 TTCCGCCCGT
* *
12453468 ACCAAGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACTGC
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACCGC
12453533 CCAC
66 CCAC
12453537 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACCGC
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACCGC
12453602 CCAC
66 CCAC
*
12453606 ACCAGGGCCCAGCGTGTGCCGATGATGATC
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATC
12453636 AAGGCAACCA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 96 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.18
Consensus pattern (69 bp):
ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACCGC
CCAC
Found at i:12453642 original size:45 final size:45
Alignment explanation
Indices: 12453569--12453725 Score: 163
Period size: 45 Copynumber: 3.5 Consensus size: 45
12453559 TGGTGATCGA
* * * * *
12453569 CCAGCATGTGCTGATGGTGTTCAGGGCAACCGCCCACACCAGGGC
1 CCAGCATGTGCCGATGGTGATCAAGGCAACCACCCGCACCAGGGC
* * * *
12453614 CCAGCGTGTGCCGATGATGATCAAGGCAACCACCCGCAACAGAGC
1 CCAGCATGTGCCGATGGTGATCAAGGCAACCACCCGCACCAGGGC
* * * * *
12453659 CCAGCAAGTGCCGATGGTGCT-AGAGGCAATCACTCGCACTAGGGC
1 CCAGCATGTGCCGATGGTGATCA-AGGCAACCACCCGCACCAGGGC
*
12453704 CCAGCGTGTGCCGATGGTGATC
1 CCAGCATGTGCCGATGGTGATC
12453726 GATCAACGTG
Statistics
Matches: 89, Mismatches: 21, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
44 1 0.01
45 88 0.99
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (45 bp):
CCAGCATGTGCCGATGGTGATCAAGGCAACCACCCGCACCAGGGC
Found at i:12453769 original size:228 final size:227
Alignment explanation
Indices: 12453468--12453954 Score: 624
Period size: 228 Copynumber: 2.1 Consensus size: 227
12453458 TTCCGCCCGT
* * * *
12453468 ACCAAGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCTGATGGTGTTCAGGGCAACTGC
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAACATGTGCTGATGGTGATCAGGGCAACCGC
*
12453533 CCACACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTGCT-GATGGTGTTCAGGGCA
66 CCACACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGT-CTCAATGGTGTTCAGGGCA
*
12453597 ACCGCCCACACCAGGGCCCAGCGTGTGCCGATGATGATC-AAGGCAACCACCCGCAAC-AGAGCC
130 ACCG-CCACACCAGGGCCCAACGTGTGCCGATGATGATCGAA-GCAACCACCCG-AACAAGAGCC
* * * *
12453660 CAGCAAGTGCCGATGGTGCTAGAGGCAATCACTCGC
192 CAACAAGTGCCGATGGTGCTAGAGGCAACCACCCAC
* * *
12453696 ACTAGGGCCCAGCGTGTGCCGATGGTGATCGATCAACGTGTG-TCGATGGTGATCGAGGG-AACC
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAACATGTGCT-GATGGTGATC-AGGGCAACC
* *** * * *
12453759 GCCTACACCAGGGTGTAGTGTGTGCCGATGGTGATCGACCAGCGTGTCTCAATGGTGTTCGGGGC
64 GCCCACACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTCTCAATGGTGTTCAGGGC
* * * *
12453824 AACCGCCGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCGTACAAGGGCCCA
129 AACCGCCACACCAGGGCCCAACGTGTGCCGATGATGATCGAAGCAACCACCCGAACAAGAGCCCA
** * *
12453889 ACGTGTGCCGATGGTGCTCGAGGCAACCGCCCAC
194 ACAAGTGCCGATGGTGCTAGAGGCAACCACCCAC
*
12453923 ACCAGGGCTCAGCGTGTGCCGATGGTGATCGA
1 ACCAGGGCCCAGCGTGTGCCGATGGTGATCGA
12453955 AGCAACCACC
Statistics
Matches: 224, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
226 2 0.01
227 108 0.48
228 110 0.49
229 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (227 bp):
ACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAACATGTGCTGATGGTGATCAGGGCAACCGC
CCACACCAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTCTCAATGGTGTTCAGGGCAA
CCGCCACACCAGGGCCCAACGTGTGCCGATGATGATCGAAGCAACCACCCGAACAAGAGCCCAAC
AAGTGCCGATGGTGCTAGAGGCAACCACCCAC
Found at i:12453788 original size:69 final size:68
Alignment explanation
Indices: 12453699--12453864 Score: 199
Period size: 69 Copynumber: 2.4 Consensus size: 68
12453689 CACTCGCACT
* * * *
12453699 AGGGCCCAGCGTGTGCCGATGGTGATCGATCAACGTGTGTCGATGGTGATCGAGGG-AACCGCCT
1 AGGGCCCAACGTGTGCCGATGGTGATCGACCAACGTGTCTCAATGGTGATCG-GGGCAACCGCC-
12453763 ACACC
64 ACACC
*** ** * * *
12453768 AGGGTGTAGTGTGTGCCGATGGTGATCGACCAGCGTGTCTCAATGGTGTTCGGGGCAACCGCCGC
1 AGGGCCCAACGTGTGCCGATGGTGATCGACCAACGTGTCTCAATGGTGATCGGGGCAACCGCCAC
12453833 ACC
66 ACC
12453836 AGGGCCCAACGTGTGCCGATGGTGATCGA
1 AGGGCCCAACGTGTGCCGATGGTGATCGA
12453865 AGCAACCACC
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
68 31 0.38
69 50 0.62
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.20
Consensus pattern (68 bp):
AGGGCCCAACGTGTGCCGATGGTGATCGACCAACGTGTCTCAATGGTGATCGGGGCAACCGCCAC
ACC
Found at i:12453893 original size:45 final size:45
Alignment explanation
Indices: 12453836--12454042 Score: 290
Period size: 45 Copynumber: 4.6 Consensus size: 45
12453826 CCGCCGCACC
**
12453836 AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCGTACA
1 AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCACACA
* * * *
12453881 AGGGCCCAACGTGTGCCGATGGTGCTCGAGGCAACCGCCCACACC
1 AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCACACA
* *
12453926 AGGGCTCAGCGTGTGCCGATGGTGATCGAAGCAACCACCCACACA
1 AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCACACA
* * * *
12453971 GGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAACCACCCACACCA
1 AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCACA-CA
12454017 A-GGCCCAACGTGTGCCGATGGTGATC
1 AGGGCCCAACGTGTGCCGATGGTGATC
12454043 AACCAGCGTG
Statistics
Matches: 142, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 140 0.99
46 2 0.01
ACGTcount: A:0.23, C:0.33, G:0.31, T:0.13
Consensus pattern (45 bp):
AGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCACCCACACA
Found at i:12453953 original size:90 final size:90
Alignment explanation
Indices: 12453810--12454042 Score: 360
Period size: 90 Copynumber: 2.6 Consensus size: 90
12453800 GCGTGTCTCA
* * *
12453810 ATGGTGTTCGGGGCAACCG-CCGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCAC
1 ATGGTGCTCGAGGCAACCGCCCACACCAGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCAC
**
12453874 CCGTACAAGGGCCCAACGTGTGCCG
66 CCACACAAGGGCCCAACGTGTGCCG
* *
12453899 ATGGTGCTCGAGGCAACCGCCCACACCAGGGCTCAGCGTGTGCCGATGGTGATCGAAGCAACCAC
1 ATGGTGCTCGAGGCAACCGCCCACACCAGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCAC
* *
12453964 CCACACAGGGGCCCAGCGTGTGCCG
66 CCACACAAGGGCCCAACGTGTGCCG
* *
12453989 ATGGTGCTCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATGGTGATC
1 ATGGTGCTCGAGGCAACCGCCCACACCAGGGCCCAACGTGTGCCGATGGTGATC
12454043 AACCAGCGTG
Statistics
Matches: 130, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 17 0.13
90 113 0.87
ACGTcount: A:0.22, C:0.33, G:0.31, T:0.13
Consensus pattern (90 bp):
ATGGTGCTCGAGGCAACCGCCCACACCAGGGCCCAACGTGTGCCGATGGTGATCGAAGCAACCAC
CCACACAAGGGCCCAACGTGTGCCG
Found at i:12454091 original size:69 final size:69
Alignment explanation
Indices: 12453976--12454105 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
12453966 ACACAGGGGC
*
12453976 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATGGTGA
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATGGTGA
12454041 TCAA
66 TCAA
* ** ** * *
12454045 CCAGCGTGTGCCAATGGTGTTCGAGGCAACTGCCCGTACCAGGGCCCAACGTTTGCCGATG
1 CCAGCGTGTGCCAATGGTGCTCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATG
12454106 CTGCTCGAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (69 bp):
CCAGCGTGTGCCAATGGTGCTCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATGGTGA
TCAA
Found at i:12454271 original size:114 final size:114
Alignment explanation
Indices: 12453932--12454272 Score: 407
Period size: 114 Copynumber: 3.0 Consensus size: 114
12453922 CACCAGGGCT
* * * *
12453932 CAGCGTGTGCCGATGGTGATCGAAGCAACCACCCACA-CAGGGGCCCAGCGTGTGCCGATGGTGC
1 CAGCGTGTGCCAATGGTGTTCGAGGCAACCACCCGCACCA-GGGCCCAGCGTGTGCCGATGGTGC
* ** * *
12453996 TCGAGGCAACCACCCACACCAAGGCCCAACGTGTGCCGATGGTGATCAAC
65 TCGAGGCAACCGCCTGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAC
** * * * *
12454046 CAGCGTGTGCCAATGGTGTTCGAGGCAACTGCCCGTACCAGGGCCCAACGTTTGCCGATGCTGCT
1 CAGCGTGTGCCAATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCT
* * *
12454111 CGAGGCAACCGTCTGCACCAGGGCCCAACGTTTGTCGATGGTGATCGAC
66 CGAGGCAACCGCCTGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAC
* * * * * *
12454160 CAGCGTGTCCCTATAGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGTGTGTACCGATGGTGGT
1 CAGCGTGTGCCAATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCT
* * *
12454225 CGAGGGGAA-TGCCTGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGA
66 CGA-GGCAACCGCCTGCACCAGGGCCCAACGTGTGCCGATGGTGATCGA
12454273 GGTAACCGTC
Statistics
Matches: 189, Mismatches: 36, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
114 183 0.97
115 6 0.03
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (114 bp):
CAGCGTGTGCCAATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCT
CGAGGCAACCGCCTGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAC
Found at i:12454294 original size:45 final size:45
Alignment explanation
Indices: 12454159--12454677 Score: 421
Period size: 45 Copynumber: 11.5 Consensus size: 45
12454149 TGGTGATCGA
* * * * * *
12454159 CCAGCGTGTCCCTATAGTGTTCGAGGCAACCACCCGCACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * * * * *
12454204 CCAGTGTGTACCGATGGTGGTCGAGGGGAA-TGCCTGCACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGA-GGCAACCGCCCGTACCAGGGC
* * * *
12454249 CCAGCGTGTGCCGATGGTGATCGAGGTAACCGTCCGTATCGGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * * ** **
12454294 CCAGCATTTGACGATGGTGATCGAGGCAACCACCCCCACTGGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * *
12454339 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCACCCCTACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * * * *
12454384 CCAACGTGTGCCGATGGTGATCAAGGTAACCACCCCTACCGGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * * * *
12454429 CCAACGTGTGTCGATGGTGTTCGAGGCGATCGCCCGTACCTGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * *
12454474 CCAGCATGTGCCGATGGTGATCGTGGGAACCGCCCGCACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * * * ** * * * *
12454519 CCAGCGTATGCCGATGCTGCTCAAGGGGACTGCCCGCACCAAGTC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* * ** * **
12454564 CCAGTAG-GTGCCAATGGTGATCGAGGCGGCCGCCCGCACTGGGGC
1 CCAG-CGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
* **
12454609 CCAACGTGTGCCGATGGTTCTCGAGGCAACCGCCCGTACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
*
12454654 CCAGCGTATGCCGATGGTGATCGA
1 CCAGCGTGTGCCGATGGTGATCGA
12454678 CTAGCATGTG
Statistics
Matches: 373, Mismatches: 97, Indels: 8
0.78 0.20 0.02
Matches are distributed among these distances:
44 5 0.01
45 363 0.97
46 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.16
Consensus pattern (45 bp):
CCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAGGGC
Found at i:12454821 original size:88 final size:88
Alignment explanation
Indices: 12454718--12454879 Score: 209
Period size: 88 Copynumber: 1.8 Consensus size: 88
12454708 CGCCCGCACC
** * * *
12454718 AGGGCCCAGCATGTGCCGATGCTGCC-CAAGGGGACCGCCCGTACCAGGGCCTAACGTGTGCCGA
1 AGGGCCCAGCATGTGCCGATGCT-CCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGA
12454782 TGGTGATCGAGACGACACCCGACT
65 TGGTGATCGAGACGACACCCGACT
* * * * **
12454806 AGGGCCCAGCGTGTGCCGATGGTCCTTAAGGCAACTGCTTGTACCAGGGCCCAACGTATACCGAT
1 AGGGCCCAGCATGTGCCGATGCTCCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGAT
12454871 GGTGATCGA
66 GGTGATCGA
12454880 CCAACGTATG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
87 2 0.03
88 60 0.97
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (88 bp):
AGGGCCCAGCATGTGCCGATGCTCCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGAT
GGTGATCGAGACGACACCCGACT
Found at i:12454888 original size:24 final size:24
Alignment explanation
Indices: 12454856--12454903 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
12454846 GTACCAGGGC
12454856 CCAACGTATACCGATGGTGATCGA
1 CCAACGTATACCGATGGTGATCGA
* *
12454880 CCAACGTATGCCGATGGTGCTCGA
1 CCAACGTATACCGATGGTGATCGA
12454904 GGCAACCGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (24 bp):
CCAACGTATACCGATGGTGATCGA
Found at i:12454913 original size:202 final size:203
Alignment explanation
Indices: 12454482--12454927 Score: 556
Period size: 202 Copynumber: 2.2 Consensus size: 203
12454472 GCCCAGCATG
* * *
12454482 TGCCGATGGTGATCGTGGGAACCGCCCGCACCAGGGCCCAGCGTATGCCGATGCTGCTCAAGGGG
1 TGCCGATGGTGATCGAGGGAACCGCCCGCACCAGGGCCCAGCATATGCCGATGCTGCCCAAGGGG
* * * * * * *
12454547 ACTGCCCGCACCAAGTCCCAGTAGGTGCCAATGGTGATCGAGGCGGCCGCCCGCACTGGGGCCCA
66 ACCGCCCGCACCAAGGCCAAGTA-GTGCCAATGGTGATCGAGACGGACACCCGCACTAGGGCCCA
* * * *
12454612 ACGTGTGCCGATGGTTCTCGAGGCAACCGCCCGTACCAGGGCCCAGCGTATGCCGATGGTGATCG
130 ACGTGTGCCGATGGTCCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATCG
* * *
12454677 ACTAGCATG
195 ACCAACATA
** * *
12454686 TGCCGATCATGTTCGAGGGAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGCTGCCCAAGGGG
1 TGCCGATGGTGATCGAGGGAACCGCCCGCACCAGGGCCCAGCATATGCCGATGCTGCCCAAGGGG
* * *
12454751 ACCGCCCGTACCAGGGCCTAACGT-GTGCCGATGGTGATCGAGAC-GACACCCG-ACTAGGGCCC
66 ACCGCCCGCACCAAGGCC-AA-GTAGTGCCAATGGTGATCGAGACGGACACCCGCACTAGGGCCC
* * * **
12454813 AGCGTGTGCCGATGGTCCTTAAGGCAACTGCTTGTACCAGGGCCCAACGTATACCGATGGTGATC
129 AACGTGTGCCGATGGTCCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATC
*
12454878 GACCAACGTA
194 GACCAACATA
* *
12454888 TGCCGATGGTGCTCGAGGCAACCGCCCGCACCAGGGCCCA
1 TGCCGATGGTGATCGAGGGAACCGCCCGCACCAGGGCCCA
12454928 ACGTGTGTCG
Statistics
Matches: 206, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
202 107 0.52
203 6 0.03
204 90 0.44
205 1 0.00
206 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.32, T:0.15
Consensus pattern (203 bp):
TGCCGATGGTGATCGAGGGAACCGCCCGCACCAGGGCCCAGCATATGCCGATGCTGCCCAAGGGG
ACCGCCCGCACCAAGGCCAAGTAGTGCCAATGGTGATCGAGACGGACACCCGCACTAGGGCCCAA
CGTGTGCCGATGGTCCTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATCGA
CCAACATA
Found at i:12454949 original size:45 final size:45
Alignment explanation
Indices: 12454880--12455038 Score: 165
Period size: 45 Copynumber: 3.5 Consensus size: 45
12454870 TGGTGATCGA
*
12454880 CCAACGTATGCCGATGGTGCTCGAGGCAACCGCCCGCACCAGGGC
1 CCAACGTATGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGC
* * * * *
12454925 CCAACGTGTGTCGATGGTGATCGAGCCAACCGCCCACACCAAGGC
1 CCAACGTATGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGC
* * * * * * * *
12454970 CCAACGTATGCCAATGGTGCTCGAGGCGATCACCCGTACCTGGGT
1 CCAACGTATGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGC
* * *
12455015 CCAGCGTGTGTCGATGGTGATCGA
1 CCAACGTATGCCGATGGTGATCGA
12455039 CCAGCGTGTG
Statistics
Matches: 90, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (45 bp):
CCAACGTATGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGC
Found at i:12454959 original size:202 final size:202
Alignment explanation
Indices: 12454501--12455032 Score: 523
Period size: 202 Copynumber: 2.6 Consensus size: 202
12454491 TGATCGTGGG
* * * *** * * *
12454501 AACCGCCCGCACCAGGGCCCAGCGTATGCCGATGCTG-CTCAAGGGGACTGCCCGCACCAAGTCC
1 AACCGCCCGCACCAGGGCCCAACATGTGCCGATGCTGAC-CAAGCCAACCGCCCACACCAAGGCC
* * * *
12454565 C-A-GTAGGTGCCAATGGTGATCGAGGCGGCCGCCCGCACTGGGGCCCAACGTGTGCCGATGGTT
65 CAACGT--GTGCCAATGGTGATCGAGGC-GACACCCGCACT-GGGCCCAGCGTGTGCCGATGGTC
* * * * * *
12454628 CTCGAGGCAACCGCCCGTACCAGGGCCCAGCGTATGCCGATGGTGATCGACTAGCATGTGCCGAT
126 CTCAAGGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATCGACCAACATATGCCGAT
* *
12454693 CATGTTCGAGGG
191 CATGCTCGAGGC
* * *** ** * *
12454705 AACCGCCCGCACCAGGGCCCAGCATGTGCCGATGCTGCCCAAGGGGACCGCCCGTACCAGGGCCT
1 AACCGCCCGCACCAGGGCCCAACATGTGCCGATGCTGACCAAGCCAACCGCCCACACCAAGGCCC
* * *
12454770 AACGTGTGCCGATGGTGATCGAGACGACACCCG-ACTAGGGCCCAGCGTGTGCCGATGGTCCTTA
66 AACGTGTGCCAATGGTGATCGAGGCGACACCCGCACT-GGGCCCAGCGTGTGCCGATGGTCCTCA
* ** * **
12454834 AGGCAACTGCTTGTACCAGGGCCCAACGTATACCGATGGTGATCGACCAACGTATGCCGATGGTG
130 AGGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATCGACCAACATATGCCGATCATG
12454899 CTCGAGGC
195 CTCGAGGC
* * * * *
12454907 AACCGCCCGCACCAGGGCCCAACGTGTGTCGATGGTGATCGAGCCAACCGCCCACACCAAGGCCC
1 AACCGCCCGCACCAGGGCCCAACATGTGCCGATGCTGACCAAGCCAACCGCCCACACCAAGGCCC
* * * * *
12454972 AACGTATGCCAATGGTGCTCGAGGCGATCACCCGTACCTGGGTCCAGCGTGTGTCGATGGT
66 AACGTGTGCCAATGGTGATCGAGGCGA-CACCCGCA-CTGGGCCCAGCGTGTGCCGATGGT
12455033 GATCGACCAG
Statistics
Matches: 273, Mismatches: 49, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
202 160 0.59
203 12 0.04
204 95 0.35
205 4 0.01
206 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (202 bp):
AACCGCCCGCACCAGGGCCCAACATGTGCCGATGCTGACCAAGCCAACCGCCCACACCAAGGCCC
AACGTGTGCCAATGGTGATCGAGGCGACACCCGCACTGGGCCCAGCGTGTGCCGATGGTCCTCAA
GGCAACCGCCCGTACCAGGGCCCAACGTATACCGATGGTGATCGACCAACATATGCCGATCATGC
TCGAGGC
Found at i:12455248 original size:45 final size:45
Alignment explanation
Indices: 12455179--12455427 Score: 239
Period size: 45 Copynumber: 5.5 Consensus size: 45
12455169 TGGTGATTGA
* * * * *
12455179 CCAGCGTCTGCCGATGGTGGTCGAGGGAACCGCCCACACCAGGAC
1 CCAGCGTGTGCCGATGGTGATCGAGGGCACCGCCCGCACCAGGGC
* * * *
12455224 CCAGCGTGTGCTGATGGTGCTCGAGGGGACCGCCCGCATCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGGCACCGCCCGCACCAGGGC
* * * * * *
12455269 CTAGCATGTGCCGATGGTGCTAGAGGTG-ACCGCCTGCACTAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGG-GCACCGCCCGCACCAGGGC
* * * * *
12455314 CCAACATGTGTCGATGGTGATCGAGGCCACCGCCCGTACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGGCACCGCCCGCACCAGGGC
* * * * **
12455359 CCAACGTGTGCCCATCGTGGTCGAGCCCACCGCCCGCACCAGGGC
1 CCAGCGTGTGCCGATGGTGATCGAGGGCACCGCCCGCACCAGGGC
*
12455404 CCAGCGTGTGCTGATGGTGATCGA
1 CCAGCGTGTGCCGATGGTGATCGA
12455428 CCAACGTTTG
Statistics
Matches: 167, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
45 166 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (45 bp):
CCAGCGTGTGCCGATGGTGATCGAGGGCACCGCCCGCACCAGGGC
Found at i:12455850 original size:69 final size:69
Alignment explanation
Indices: 12455721--12455851 Score: 156
Period size: 69 Copynumber: 1.9 Consensus size: 69
12455711 GCACCAAGAC
* ** * * * *
12455721 CCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCTTATCGAGGCCTAGCTTGTGCCGATGGTGA
1 CCAGCGTGTACCGATGGTGCTCGAGGCAACCGCCCACATCCAGGCCCAACATGTGCCGATGGTGA
12455786 TCGA
66 TCGA
* * *
12455790 CCAGCGTGTATCGATGGTGTTCGAGGCAACCGCCCACA-CCAGGACCCAACATGTGTCGATGG
1 CCAGCGTGTACCGATGGTGCTCGAGGCAACCGCCCACATCCAGG-CCCAACATGTGCCGATGG
12455852 CGCTCGAGGC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
68 4 0.08
69 47 0.92
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (69 bp):
CCAGCGTGTACCGATGGTGCTCGAGGCAACCGCCCACATCCAGGCCCAACATGTGCCGATGGTGA
TCGA
Found at i:12455864 original size:45 final size:45
Alignment explanation
Indices: 12455801--12455993 Score: 215
Period size: 45 Copynumber: 4.3 Consensus size: 45
12455791 CAGCGTGTAT
* * * * *
12455801 CGATGGTGTTCGAGGCAACCGCCCACACCAGGACCCAACATGTGT
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGACCCAGCATATGC
* * * *
12455846 CGATGGCGCTCGAGGCAACCGCCCGCACTAGGGCCCAGCGTATGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGACCCAGCATATGC
* * * * * *
12455891 CGATAGTGATCGAGGTAACCGCCCGCACCAGGGCCTAGCGTATGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGACCCAGCATATGC
* * *
12455936 CGATGGTGCTCGAGGCCACCGCCCGCACCTGGACCCAGCATGTGC
1 CGATGGTGCTCGAGGCAACCGCCCGCACCAGGACCCAGCATATGC
*
12455981 CGATGGTGATCGA
1 CGATGGTGCTCGA
12455994 CCAACGTGCG
Statistics
Matches: 123, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 123 1.00
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.15
Consensus pattern (45 bp):
CGATGGTGCTCGAGGCAACCGCCCGCACCAGGACCCAGCATATGC
Found at i:12455892 original size:114 final size:114
Alignment explanation
Indices: 12455637--12455903 Score: 302
Period size: 114 Copynumber: 2.3 Consensus size: 114
12455627 AGGGCCCACA
* * * * * * * *
12455637 CGCCTGCACCAGGGCCCAGTGTGTGCCGATGGTGATCAACCAGTATGTGTCGATGGTGTTTGGGG
1 CGCCCGCACTAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTATCGATGGTGTTCGAGG
* * * * * *
12455702 TAACTGCCCGCACCAAGACCCAGCGTGTGCCGATGGTGCTCGAGGCAAC
66 CAACCGCCCACACCAAGACCCAACATGTGCCGATGGCGCTCGAGGCAAC
** * * * *
12455751 CGCCCTTA-TCGAGGCCTAGCTTGTGCCGATGGTGATCGACCAGCGTGTATCGATGGTGTTCGAG
1 CGCCCGCACTAG-GGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTATCGATGGTGTTCGAG
* *
12455815 GCAACCGCCCACACCAGGACCCAACATGTGTCGATGGCGCTCGAGGCAAC
65 GCAACCGCCCACACCAAGACCCAACATGTGCCGATGGCGCTCGAGGCAAC
* *
12455865 CGCCCGCACTAGGGCCCAGCGTATGCCGATAGTGATCGA
1 CGCCCGCACTAGGGCCCAGCGTGTGCCGATGGTGATCGA
12455904 GGTAACCGCC
Statistics
Matches: 122, Mismatches: 29, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
113 1 0.01
114 119 0.98
115 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (114 bp):
CGCCCGCACTAGGGCCCAGCGTGTGCCGATGGTGATCGACCAGCATGTATCGATGGTGTTCGAGG
CAACCGCCCACACCAAGACCCAACATGTGCCGATGGCGCTCGAGGCAAC
Found at i:12455998 original size:159 final size:159
Alignment explanation
Indices: 12455835--12456152 Score: 368
Period size: 159 Copynumber: 2.0 Consensus size: 159
12455825 ACACCAGGAC
* * * *
12455835 CCAACATGTGTCGATGGCGCTCGAGGCAACCGCCCGCA-CTAGGGCCCAGCGTATGCCGATAGTG
1 CCAACATGCGTCAATGGCGCTCGAGACAACCGCCCGCATC-AGGGCCCAGCATATGCCGATAGTG
* * * *
12455899 ATCGAGGTAACCGCCCGCACCAGGGCCTAGCGTATGCCGATGGTGCTCGAGGCCACCGCCCGCAC
65 ATCGAGGCAACCGCCCGCACCAGGGCCCAGCGTATGCCGATGGTGCACAAGGCCACCGCCCGCAC
*
12455964 CTGGACCCAGCATGTGCCGATGGTGATCGA
130 CAGGACCCAGCATGTGCCGATGGTGATCGA
* * * * * * *
12455994 CCAACGTGCGTCAATGGTGTTCGAGACAATCGCCCGCATCAGGGCCCAGCATGTGCCGATGGTGC
1 CCAACATGCGTCAATGGCGCTCGAGACAACCGCCCGCATCAGGGCCCAGCATATGCCGATAGTGA
** * ** * * **
12456059 TCGAGGCAACCGTTCGCATCAGGGCCCAGTTTGTGCCGATGGTGCACAAGGCGATTGCCCGCACC
66 TCGAGGCAACCGCCCGCACCAGGGCCCAGCGTATGCCGATGGTGCACAAGGCCACCGCCCGCACC
* * *
12456124 AGGGCCCAGGATGTGTCGATGGTGATCGA
131 AGGACCCAGCATGTGCCGATGGTGATCGA
12456153 GGGAACCGCT
Statistics
Matches: 130, Mismatches: 28, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
159 129 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (159 bp):
CCAACATGCGTCAATGGCGCTCGAGACAACCGCCCGCATCAGGGCCCAGCATATGCCGATAGTGA
TCGAGGCAACCGCCCGCACCAGGGCCCAGCGTATGCCGATGGTGCACAAGGCCACCGCCCGCACC
AGGACCCAGCATGTGCCGATGGTGATCGA
Found at i:12456121 original size:204 final size:203
Alignment explanation
Indices: 12455703--12456197 Score: 537
Period size: 204 Copynumber: 2.4 Consensus size: 203
12455693 TGTTTGGGGT
* * * * * *
12455703 AACTGCCCGCACCAAGACCCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCTTATCGAGGCCT
1 AACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCGTACCG-GACCC
* * * * *
12455768 AGCTTGTGCCGATGGTGATCGACCAGCGTGTATCGATGGTGTTCGAGGCAACCGCCCACACCAGG
65 AGCATGTGCCGATGGTGATCGACCAACGTGCATCAATGGTGTTCGAGACAACCGCCCACACCAGG
*
12455833 ACCCAACATGTGTCGATGGCGCTCGAGGCAACCGCCCGCACTAGGGCCCAGCGTATGCCGATAGT
130 ACCCAACATGTGCCGATGGCGCTCGAGGCAACCGCCCGCACTAGGGCCCAGCGTATGCCGATAGT
* *
12455898 GATCGAGGT
195 GATCAAGGC
* * * * *
12455907 AACCGCCCGCACCAGGGCCTAGCGTATGCCGATGGTGCTCGAGGCCACCGCCCGCACCTGGACCC
1 AACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCGTACC-GGACCC
* * * *
12455972 AGCATGTGCCGATGGTGATCGACCAACGTGCGTCAATGGTGTTCGAGACAATCGCCCGCATCAGG
65 AGCATGTGCCGATGGTGATCGACCAACGTGCATCAATGGTGTTCGAGACAACCGCCCACACCAGG
* * * ** ** * *
12456037 GCCCAGCATGTGCCGATGGTGCTCGAGGCAACCGTTCGCA-TCAGGGCCCAGTTTGTGCCGATGG
130 ACCCAACATGTGCCGATGGCGCTCGAGGCAACCGCCCGCACT-AGGGCCCAGCGTATGCCGATAG
12456101 TGCA-CAAGGC
194 TG-ATCAAGGC
* * * * * ** *
12456111 GATTGCCCGCACCAGGGCCCAG-GATGTGTCGATGGTGATCGAGGGAACCGCTTGTACCAAGACC
1 AACTGCCCGCACCAGGGCCCAGCG-TGTGCCGATGGTGCTCGAGGCAACCGCCCGTACC-GGACC
* *
12456175 CAGCGTGTGCCGATGGTGCTCGA
64 CAGCATGTGCCGATGGTGATCGA
12456198 AGGGACCGCC
Statistics
Matches: 239, Mismatches: 48, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
203 2 0.01
204 235 0.98
205 2 0.01
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (203 bp):
AACTGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGCTCGAGGCAACCGCCCGTACCGGACCCA
GCATGTGCCGATGGTGATCGACCAACGTGCATCAATGGTGTTCGAGACAACCGCCCACACCAGGA
CCCAACATGTGCCGATGGCGCTCGAGGCAACCGCCCGCACTAGGGCCCAGCGTATGCCGATAGTG
ATCAAGGC
Found at i:12456507 original size:45 final size:45
Alignment explanation
Indices: 12456024--12456509 Score: 417
Period size: 45 Copynumber: 10.8 Consensus size: 45
12456014 TCGAGACAAT
* * * *
12456024 CGCCCGCATCAGGGCCCAGCATGTGCCGATGGTGCTCGAGGCAAC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
** * ** * *
12456069 CGTTCGCATCAGGGCCCAGTTTGTGCCGATGGTGCA-CAAGGCGAT
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTG-ATCGAGGCGAC
* *
12456114 TGCCCGCACCAGGGCCCAG-GATGTGTCGATGGTGATCGAGG-GAAC
1 CGCCCGCACCAGGGCCCAGCG-TGTGCCGATGGTGATCGAGGCG-AC
** * * * *
12456159 CGCTTGTACCAAGACCCAGCGTGTGCCGATGGTGCTCGAAGG-GAC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCG-AGGCGAC
** * * * * * *
12456204 CGCCTACACTAGGGCCCAACATGTGTCGATGGTGCTGGAGGCGAC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
* *
12456249 CGCCCGCACCAGGGCCCAGCGTGTGCCTATGGTGCTCGAGGC-AC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
* * * *
12456293 CGCTCGTACCAAGGCCCAGCGTGTGCTC-ATGGTGATCGAGGTGAC
1 CGCCCGCACCAGGGCCCAGCGTGTGC-CGATGGTGATCGAGGCGAC
* * * * * *
12456338 CGCCCGTACCGGGGCCCAGCGTTTGCCGATGGTGTTCGGGGCAAC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
* * * * * * *
12456383 CGCTCGCACTAGGGTCCAGCATGTGCCGATGGTGATCAAGGTGCC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
* * * *
12456428 CACCCACACCTGGGCCCAGCGTGTGTCGATGGTGATCGAGGCGAC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
**
12456473 CGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTGATC
1 CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATC
12456510 AGCTAGCGTG
Statistics
Matches: 348, Mismatches: 83, Indels: 20
0.77 0.18 0.04
Matches are distributed among these distances:
44 43 0.12
45 300 0.86
46 5 0.01
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (45 bp):
CGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGATCGAGGCGAC
Found at i:12456558 original size:69 final size:69
Alignment explanation
Indices: 12456445--12456578 Score: 189
Period size: 69 Copynumber: 1.9 Consensus size: 69
12456435 ACCTGGGCCC
* * * *
12456445 AGCGTGTGTCGATGGTGATCGAGGCGACCGCCCAAACCAGGGCCCAGCGTGTG-CCGATGGTGAT
1 AGCGTGTGCCGATGGTGATCGAGGCAACCACCCAAACCAAGGCCCAGCGTG-GACCGATGGTGAT
12456509 CAGCT
65 CAGCT
* **
12456514 AGCGTGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCGTGGACCGATGGTGATC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCACCCAAACCAAGGCCCAGCGTGGACCGATGGTGATC
12456579 GAGGCAATCG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
68 1 0.02
69 56 0.98
ACGTcount: A:0.19, C:0.29, G:0.35, T:0.16
Consensus pattern (69 bp):
AGCGTGTGCCGATGGTGATCGAGGCAACCACCCAAACCAAGGCCCAGCGTGGACCGATGGTGATC
AGCT
Found at i:12456581 original size:45 final size:45
Alignment explanation
Indices: 12456514--12456945 Score: 240
Period size: 45 Copynumber: 9.5 Consensus size: 45
12456504 GTGATCAGCT
* *
12456514 AGCGTGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * * * *
12456559 AGCGTG-GACCGATGGTGATCGAGGCAATCGCTCGCACCAGGGTCT
1 AGCGTGTG-CCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * *
12456604 AGCGTGTGCCGATGGTGTTCGGGGCTACCGCCCGCACCAAGGCCC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * * * * ** *
12456649 AGTGTGTGCCAATGGTGATCAAGGCGACCGCCCGCAACGGGGCCT
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * * * * ** *
12456694 AACGTGTACCGATGGTGCTCAAGGCAACCGTCAACACCAGGGCCC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * * * * * ***
12456739 AGCGTGTGTCAATGGTGATC-AAGCAGCGTGTGCCAATGGTGTTCAAGG-CC
1 AGCGTGTGCCGATGGTGATCGAGGCAAC---CGCC---CG-CACCAAGGCCC
* * * * * ** **
12456789 ATCTTCTACCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGTC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* * * * ** * *
12456834 GGCTTGTGTCGATGGTGCTCGAGGCAACCGCCCATACCAGGGCTC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
** * * *
12456879 AATGTGTGCCGATGGTGATCGAGGCAACCGCACGTACCAAGACCC
1 AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
* *
12456924 AGCATGAGCCGATGGTGATCGA
1 AGCGTGTGCCGATGGTGATCGA
12456946 CCAGCGTGTG
Statistics
Matches: 281, Mismatches: 95, Indels: 22
0.71 0.24 0.06
Matches are distributed among these distances:
44 11 0.04
45 241 0.86
46 1 0.00
47 2 0.01
48 3 0.01
50 15 0.05
51 8 0.03
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (45 bp):
AGCGTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAGGCCC
Found at i:12456608 original size:114 final size:114
Alignment explanation
Indices: 12456404--12456620 Score: 274
Period size: 114 Copynumber: 1.9 Consensus size: 114
12456394 GGGTCCAGCA
*** ** *
12456404 TGTGCCGATGGTGATCAAGGTGCCCACCCACACCTGGGCCCAGCGTGTGTCGATGGTGATCGAGG
1 TGTGCCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCGTGTGCCGATGGTGATCGAGG
*
12456469 CGACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTGATCAGCTAGCG
66 CAACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTGATCAGCTAGCG
* * *
12456518 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCGTG-GACCGATGGTGATCGAG
1 TGTGCCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCGTGTG-CCGATGGTGATCGAG
* * ** * *
12456582 GCAATCGCTCGCACCAGGGTCTAGCGTGTGCCGATGGTG
65 GCAACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTG
12456621 TTCGGGGCTA
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
113 1 0.01
114 85 0.99
ACGTcount: A:0.18, C:0.30, G:0.35, T:0.17
Consensus pattern (114 bp):
TGTGCCGATGGTGATCAAGGCAACCACCCACACCAAGGCCCAGCGTGTGCCGATGGTGATCGAGG
CAACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTGATCAGCTAGCG
Found at i:12456665 original size:90 final size:90
Alignment explanation
Indices: 12456512--12456761 Score: 295
Period size: 90 Copynumber: 2.8 Consensus size: 90
12456502 TGGTGATCAG
* *
12456512 CTAGCGTGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCGTG-GACCGATGGTG
1 CTAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCGTGTG-CCAATGGTG
* * * * *
12456576 ATCGAGGCAATCGCTCGCACCAGGGT
65 ATCAAGGCAACCGCCCGCAACAGGGC
* * *
12456602 CTAGCGTGTGCCGATGGTGTTCGGGGCTACCGCCCGCACCAAGGCCCAGTGTGTGCCAATGGTGA
1 CTAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCGTGTGCCAATGGTGA
* *
12456667 TCAAGGCGACCGCCCGCAACGGGGC
66 TCAAGGCAACCGCCCGCAACAGGGC
* * * * * ** * *
12456692 CTAACGTGTACCGATGGTGCTCAAGGCAACCGTCAACACCAGGGCCCAGCGTGTGTCAATGGTGA
1 CTAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCGTGTGCCAATGGTGA
12456757 TCAAG
66 TCAAG
12456762 CAGCGTGTGC
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
90 134 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.16
Consensus pattern (90 bp):
CTAGCGTGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCGTGTGCCAATGGTGA
TCAAGGCAACCGCCCGCAACAGGGC
Found at i:12456666 original size:204 final size:203
Alignment explanation
Indices: 12456310--12456681 Score: 462
Period size: 204 Copynumber: 1.8 Consensus size: 203
12456300 ACCAAGGCCC
** * * ** * *
12456310 AGCGTGTGCTCATGGTGATCGAGGTGACCGCCCGTACCGGGGCCCAGCGTTTGCCGATGGTGTTC
1 AGCGTGTGCTCATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAGCGTTGGCCGATGGTGATC
* * * **
12456375 GGGGCAACCGCTCGCACTAGGGTCCAGCATGTGCCGATGGTGATCAAGGTGCCCACCCACACCTG
66 GAGGCAACCGCTCGCACCAGGGTCCAGCATGTGCCGATGGTGATC-AGGGGCCCACCCACACCAA
* * *
12456440 GGCCCAGCGTGTGTCGATGGTGATCGAGGCGACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGG
130 GGCCCAGCGTGTGCCAATGGTGATCAAGGCGACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGG
12456505 TGATCAGCT
195 TGATCAGCT
*
12456514 AGCGTGTGC-CGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCG-TGGACCGATGGTGA
1 AGCGTGTGCTC-ATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAGCGTTGG-CCGATGGTGA
* * * * * *
12456577 TCGAGGCAATCGCTCGCACCAGGGTCTAGCGTGTGCCGATGGTGTTC-GGGGCTACCGCCCGCAC
64 TCGAGGCAACCGCTCGCACCAGGGTCCAGCATGTGCCGATGGTGATCAGGGGC--CCACCCACAC
*
12456641 CAAGGCCCAGTGTGTGCCAATGGTGATCAAGGCGACCGCCC
127 CAAGGCCCAGCGTGTGCCAATGGTGATCAAGGCGACCGCCC
12456682 GCAACGGGGC
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
202 4 0.03
203 3 0.02
204 133 0.95
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (203 bp):
AGCGTGTGCTCATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAGCGTTGGCCGATGGTGATC
GAGGCAACCGCTCGCACCAGGGTCCAGCATGTGCCGATGGTGATCAGGGGCCCACCCACACCAAG
GCCCAGCGTGTGCCAATGGTGATCAAGGCGACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGT
GATCAGCT
Found at i:12456738 original size:249 final size:248
Alignment explanation
Indices: 12456265--12456787 Score: 613
Period size: 249 Copynumber: 2.1 Consensus size: 248
12456255 CACCAGGGCC
* * * * *
12456265 CAGCGTGTGCCTATGGTGCTCGAGGCACCGCTCGTACCAAGGCCCAGCGTGTGCTCATGGTGATC
1 CAGCGTGTGCCAATGGTGTTCGAGGCACCACCCGCACCAAGGCCCAGCGTGTGCTCATGGTGATC
** * * * * * *
12456330 GAGGTGACCGCCCGTACCGGGGCCCAGCGTTTGCCGATGGTGTTCGGGGCAACCGCTCGCACTAG
66 GAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGGGGCAACCGCCCGCACCAA
* * * * * * * **
12456395 GGTCCAGCATGTGCCGATGGTGATCAAGGTGCCCACCCACACCTGGGCCCAGCGTGTGTCGATGG
131 GGCCCAGCATGTGCCAATGGTGATCAAGGCGACCACCCACAACGGGGCCCAACGTGTACCGATGG
* * *
12456460 TGATCGAGGCGACCGCCCAAACCAGGGCCCAGCGTGTGCCGATGGTGATC-AG
196 TGATCAAGGCAACCGCCCAAACCAGGGCCCAGCGTGTGCCAATGGTGATCAAG
*
12456512 CTAGCGTGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCGTG-GAC-CGATGGT
1 C-AGCGTGTGCCAATGGTGTTCGAGGC-ACCACCCGCACCAAGGCCCAGCGTGTG-CTC-ATGGT
* * * * *
12456575 GATCGAGGCAATCGCTCGCACCAGGGTCTAGCGTGTGCCGATGGTGTTCGGGGCTACCGCCCGCA
62 GATCGAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGGGGCAACCGCCCGCA
** * * *
12456640 CCAAGGCCCAGTGTGTGCCAATGGTGATCAAGGCGACCGCCCGCAACGGGGCCTAACGTGTACCG
127 CCAAGGCCCAGCATGTGCCAATGGTGATCAAGGCGACCACCCACAACGGGGCCCAACGTGTACCG
* * *
12456705 ATGGTGCTCAAGGCAACCG-TCAACACCAGGGCCCAGCGTGTGTCAATGGTGATCAAG
192 ATGGTGATCAAGGCAACCGCCCAA-ACCAGGGCCCAGCGTGTGCCAATGGTGATCAAG
*
12456762 CAGCGTGTGCCAATGGTGTTCAAGGC
1 CAGCGTGTGCCAATGGTGTTCGAGGC
12456788 CATCTTCTAC
Statistics
Matches: 230, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
247 1 0.00
248 28 0.12
249 198 0.86
250 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (248 bp):
CAGCGTGTGCCAATGGTGTTCGAGGCACCACCCGCACCAAGGCCCAGCGTGTGCTCATGGTGATC
GAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGGGGCAACCGCCCGCACCAA
GGCCCAGCATGTGCCAATGGTGATCAAGGCGACCACCCACAACGGGGCCCAACGTGTACCGATGG
TGATCAAGGCAACCGCCCAAACCAGGGCCCAGCGTGTGCCAATGGTGATCAAG
Found at i:12456766 original size:24 final size:24
Alignment explanation
Indices: 12456738--12456785 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
12456728 CACCAGGGCC
*
12456738 CAGCGTGTGTCAATGGTGATCAAG
1 CAGCGTGTGCCAATGGTGATCAAG
*
12456762 CAGCGTGTGCCAATGGTGTTCAAG
1 CAGCGTGTGCCAATGGTGATCAAG
12456786 GCCATCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (24 bp):
CAGCGTGTGCCAATGGTGATCAAG
Found at i:12456979 original size:24 final size:24
Alignment explanation
Indices: 12456934--12456979 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
12456924 AGCATGAGCC
* * *
12456934 GATGGTGATCGACCAGCGTGTGTT
1 GATGGTGATCAACCAACATGTGTT
12456958 GATGGTGATCAACCAACATGTG
1 GATGGTGATCAACCAACATGTG
12456980 CATTAGGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (24 bp):
GATGGTGATCAACCAACATGTGTT
Found at i:12458258 original size:160 final size:161
Alignment explanation
Indices: 12457929--12458363 Score: 441
Period size: 160 Copynumber: 2.7 Consensus size: 161
12457919 GGACCGGTAA
* * * **
12457929 CGGGATCAACAGCAACACGCAGAGGGGGACCGGGCCGGTCCCCAGCTTGCGCATGCTGCCCCTTT
1 CGGGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATGCTGCCCCTCC
* * *
12457994 GACCGGTTCAATGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCAGTGTTCATTCCTGGT
66 GACCGGCTCAATGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCTGAT
* *
12458059 CTAAGCCCCAGTCGAACTGAGGGACCGGCAG
131 CTAAGCCCCAGTCGAACCGAGGGACCGACAG
* * *
12458090 CAGGATCGACAGTAGCACGCAGAGGGGGACCAGGCCGATCCCC-GACTTGCGCAT-CTTGCCCCT
1 CGGGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAG-CTTGCGCATGC-TGCCCCT
* * * * *
12458153 CCGACTGGCTCAGCT-CTCGCACGCTCGTTTTG-GGGTTGAGTTAGGCATACGAG-GTTCATT-C
64 CCGACCGGCTCA-ATGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-AGTGTTCATTCC
*
12458214 TCGATCTAAGCCCCATTCGAACCGAGGGACCGACAG
127 T-GATCTAAGCCCCAGTCGAACCGAGGGACCGACAG
* * * * * * * * * *
12458250 CGGGATCGATAGCAGCACACAGAGAGGGATCGGGTCGATCCCCAGCTTGCGTATCCTGGCTCTTC
1 CGGGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATGCTGCCCCTCC
* * * * * * * * *
12458315 GGCAGGCTGAGTGCTTGCATGCTCGTTCCGTGGGTTGACTCAGGCATAC
66 GACCGGCTCAATGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
12458364 GTAGTGCATT
Statistics
Matches: 224, Mismatches: 41, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
159 3 0.01
160 124 0.55
161 96 0.43
162 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (161 bp):
CGGGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATGCTGCCCCTCC
GACCGGCTCAATGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCTGAT
CTAAGCCCCAGTCGAACCGAGGGACCGACAG
Found at i:12460941 original size:45 final size:44
Alignment explanation
Indices: 12460855--12461148 Score: 268
Period size: 45 Copynumber: 6.6 Consensus size: 44
12460845 GGCACTGTAA
* * * * * * *
12460855 CCCAGTGTGTGCCCATAGTGCTCGAGGCCACCACCTCCACCAGGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCAACCGCC-GCACCAGGG
* * *
12460900 CCCAGCGTGTGCCGATGGTGTTCGGGGCAACCGCTCACACCAGGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCAACCGC-CGCACCAGGG
* * *
12460945 CCCAGCGTGTGCTGATGGTGATCGA-CCAGACCACCTGCA-CAGGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCA-ACCGCC-GCACCAGGG
* * *
12460989 CCTAGCATGTGCCGATGGTGCTCGAGGCAACCGCCTGCACCAGGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCAACCGCC-GCACCAGGG
* * * * * *
12461034 CCCAACGTGTGTCGATGGTGCTTGAGGCAACCACCCGCACTAGGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCAACC-GCCGCACCAGGG
* ** *
12461079 CCCAGCATGTGCCGATGGTGATCGAGGTGACCGCTCGCACCAAGG
1 CCCAGCGTGTGCCGATGGTGATCGAGGCAACCGC-CGCACCAGGG
*
12461124 CCCAACGTGTGCCGATGGTGATCGA
1 CCCAGCGTGTGCCGATGGTGATCGA
12461149 CCAGCATGTG
Statistics
Matches: 203, Mismatches: 39, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
44 39 0.19
45 161 0.79
46 3 0.01
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (44 bp):
CCCAGCGTGTGCCGATGGTGATCGAGGCAACCGCCGCACCAGGG
Found at i:12461102 original size:134 final size:134
Alignment explanation
Indices: 12460862--12461103 Score: 342
Period size: 134 Copynumber: 1.8 Consensus size: 134
12460852 TAACCCAGTG
* * *
12460862 TGTGCCCATAGTGCTCGAGGCCACCACCTCCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGGGG
1 TGTGCCCATAGTGCTCGAGGCAACCACCTCCACCAGGGCCCAACGTGTGCCGATGGTGTTCGAGG
* * * *
12460927 CAACCGCTCACACCAGGGCCCAGCGTGTGCTGATGGTGATCGACCAGACCACCTGCACAGGGCCT
66 CAACCACCCACACCAGGGCCCAGCATGTGCCGATGGTGATCGACCAGACCACCTGCACAGGGCCT
12460992 AGCA
131 AGCA
* * * * *
12460996 TGTGCCGATGGTGCTCGAGGCAACCGCCTGCACCAGGGCCCAACGTGTGTCGATGGTGCTT-GAG
1 TGTGCCCATAGTGCTCGAGGCAACCACCTCCACCAGGGCCCAACGTGTGCCGATGGTG-TTCGAG
* *
12461060 GCAACCACCCGCACTAGGGCCCAGCATGTGCCGATGGTGATCGA
65 GCAACCACCCACACCAGGGCCCAGCATGTGCCGATGGTGATCGA
12461104 GGTGACCGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
134 91 0.98
135 2 0.02
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.17
Consensus pattern (134 bp):
TGTGCCCATAGTGCTCGAGGCAACCACCTCCACCAGGGCCCAACGTGTGCCGATGGTGTTCGAGG
CAACCACCCACACCAGGGCCCAGCATGTGCCGATGGTGATCGACCAGACCACCTGCACAGGGCCT
AGCA
Found at i:12461112 original size:90 final size:88
Alignment explanation
Indices: 12460872--12461148 Score: 317
Period size: 90 Copynumber: 3.1 Consensus size: 88
12460862 TGTGCCCATA
* * * *
12460872 GTGCTCGAGGCCACCACCTC-CACCAGGGCCCAGCGTGTGCCGATGGTGTTCGGGGCAACCGCTC
1 GTGCTCGAGGCAACCACC-CGCA-CAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCTC
* *
12460936 ACACCAGGGCCCAGCGTGTGCTGATG
64 GCACCAGGGCCCAACGTGTGC-GATG
* * * * *
12460962 GTGATCGA-CCAGACCACCTGCACAGGGCCTAGCATGTGCCGATGGTGCTCGAGGCAACCGC-CT
1 GTGCTCGAGGCA-ACCACCCGCACAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCTC-
12461025 GCACCAGGGCCCAACGTGTGTCGATG
64 GCACCAGGGCCCAACGTGTG-CGATG
* **
12461051 GTGCTTGAGGCAACCACCCGCACTAGGGCCCAGCATGTGCCGATGGTGATCGAGGTGACCGCTCG
1 GTGCTCGAGGCAACCACCCGCAC-AGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCTCG
*
12461116 CACCAAGGCCCAACGTGTGCCGATG
65 CACCAGGGCCCAACGTGTG-CGATG
*
12461141 GTGATCGA
1 GTGCTCGA
12461149 CCAGCATGTG
Statistics
Matches: 158, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
88 1 0.01
89 74 0.47
90 82 0.52
91 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (88 bp):
GTGCTCGAGGCAACCACCCGCACAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCTCGC
ACCAGGGCCCAACGTGTGCGATG
Found at i:12461195 original size:69 final size:69
Alignment explanation
Indices: 12461080--12461355 Score: 345
Period size: 69 Copynumber: 4.0 Consensus size: 69
12461070 GCACTAGGGC
* ** * *
12461080 CCAGCATGTGCCGATGGTGATCGAGGTGACCGCTCGCACCAAGGCCCAACGTGTGCCGATGGTGA
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGA
12461145 TCGA
66 TCGA
* * * *
12461149 CCAGCATGTGCCAATGGTGTTTGGGGCAACCGCCCGCACCAGGGCCCAACGTGTGCTGATGGTGA
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGA
12461214 TCGA
66 TCGA
*** * * * *
12461218 CCAATGTGTGCCGATGGTGCTCGAGGTAACCGTCTGCACCAGGGCCCAACGTGTGCCGATGGTGA
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGA
12461283 TCGA
66 TCGA
* * * * * * *
12461287 CCAGCGTGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCGGGGCCTAGCATGTGCCGATGGTGA
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGA
12461352 TCGA
66 TCGA
12461356 GGTAACCGCC
Statistics
Matches: 176, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 176 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (69 bp):
CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGA
TCGA
Found at i:12461226 original size:24 final size:24
Alignment explanation
Indices: 12461194--12461310 Score: 75
Period size: 24 Copynumber: 5.0 Consensus size: 24
12461184 GCACCAGGGC
*
12461194 CCAACGTGTGCTGATGGTGATCGA
1 CCAACGTGTGCCGATGGTGATCGA
* *
12461218 CCAATGTGTGCCGATGGTGCTCGA
1 CCAACGTGTGCCGATGGTGATCGA
** * *
12461242 GGTAACCGTCTGCACCA-GG-G--C--
1 -CCAA-CGTGTGC-CGATGGTGATCGA
12461263 CCAACGTGTGCCGATGGTGATCGA
1 CCAACGTGTGCCGATGGTGATCGA
* * *
12461287 CCAGCGTGTGCTGATGGTGTTCGA
1 CCAACGTGTGCCGATGGTGATCGA
12461311 GGCAACCGCC
Statistics
Matches: 69, Mismatches: 15, Indels: 18
0.68 0.15 0.18
Matches are distributed among these distances:
18 2 0.03
19 8 0.12
20 3 0.04
22 1 0.01
23 1 0.01
24 42 0.61
25 3 0.04
26 7 0.10
27 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (24 bp):
CCAACGTGTGCCGATGGTGATCGA
Found at i:12461342 original size:138 final size:138
Alignment explanation
Indices: 12461086--12461355 Score: 398
Period size: 138 Copynumber: 2.0 Consensus size: 138
12461076 GGGCCCAGCA
*
12461086 TGTGCCGATGGTGATCGAGGTGACCGCTCGCACCAAGGCCCAACGTGTGCCGATGGTGATCGACC
1 TGTGCCGATGGTGATCGAGGTAACCGCTCGCACCAAGGCCCAACGTGTGCCGATGGTGATCGACC
* * * * *
12461151 AGCATGTGCCAATGGTGTTTGGGGCAACCGCCCGCACCAGGGCCCAACGTGTGCTGATGGTGATC
66 AGCATGTGCCAATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCCAACATGTGCCGATGGTGATC
12461216 GACCAATG
131 GACCAATG
* *
12461224 TGTGCCGATGGTGCTCGAGGTAACCG-TCTGCACCAGGGCCCAACGTGTGCCGATGGTGATCGAC
1 TGTGCCGATGGTGATCGAGGTAACCGCTC-GCACCAAGGCCCAACGTGTGCCGATGGTGATCGAC
* ** * * *
12461288 CAGCGTGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCGGGGCCTAGCATGTGCCGATGGTGAT
65 CAGCATGTGCCAATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCCAACATGTGCCGATGGTGAT
12461353 CGA
130 CGA
12461356 GGTAACCGCC
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 2 0.02
138 115 0.98
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (138 bp):
TGTGCCGATGGTGATCGAGGTAACCGCTCGCACCAAGGCCCAACGTGTGCCGATGGTGATCGACC
AGCATGTGCCAATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCCAACATGTGCCGATGGTGATC
GACCAATG
Found at i:12461357 original size:45 final size:45
Alignment explanation
Indices: 12461287--12461710 Score: 250
Period size: 45 Copynumber: 9.4 Consensus size: 45
12461277 TGGTGATCGA
* * *
12461287 CCAGCGTGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCGGGGC
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGC
* * * *
12461332 CTAGCATGTGCCGATGGTGATCGAGGTAACCGCCTGCACC-GAGGC
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAG-GGC
** * * * * *
12461377 CCAGTGTGTGCCGATGGTGTTTGACGCAACCACCCGCACCAAGG-
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGC
* * * * * * ** * *
12461421 CCATCTTCTGTCGATGGTGGTCGAGGTAAGAGCCCGCACCAAAGG-
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACC-AGGGC
*** * * ** *
12461466 TTGGCTTGTGTCGATGGTCCTCGAGGCAACCGCCCA-CACAAAGGG-
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCG-CCAGCAC-CAGGGC
* * * * * *
12461511 CC-GGATTTGTGCCGATGGTGCTCGAGCCAATTCGCCCGTACCAGGGC
1 CCAGCA--TGTGCCGATGGTGTTCGAGGCAA-CCGCCAGCACCAGGGC
* * * * * *
12461558 CCAGCGTGTGTCGATGGTGTTTGAGCCAACTGCCTA-CACTAGGGC
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCC-AGCACCAGGGC
* * * *
12461603 CCAGCATGTACCGATGGTGTTCGAGGTAATCGCCTGCACCAGGGC
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGC
* * *
12461648 CCAGCATGTGTCGATGGTGATCGAGGCAACCGCCTGCACCAGGGCC
1 CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAGGG-C
*
12461694 CCAGCATGTGCAGATGG
1 CCAGCATGTGCCGATGG
12461711 CAGTCAAGGC
Statistics
Matches: 286, Mismatches: 79, Indels: 27
0.73 0.20 0.07
Matches are distributed among these distances:
44 30 0.10
45 185 0.65
46 64 0.22
47 6 0.02
48 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGC
Found at i:12461397 original size:90 final size:89
Alignment explanation
Indices: 12461287--12461710 Score: 320
Period size: 90 Copynumber: 4.7 Consensus size: 89
12461277 TGGTGATCGA
*
12461287 CCAGCGTGTG-CTGATGGTGTTCGAGGCAACCGCCAGCACCGGGGCCTAGCATGTGCCGATGGTG
1 CCAGCGTGTGTC-GATGGTGTTCGAGGCAACCGCCAGCACCAGGGCC-AGCATGTGCCGATGGTG
* *
12461351 ATCGAGGTAACCGCCTGCACC-GAGGC
64 ATCGAGGTAATCGCCCGCACCAG-GGC
* * * * * * * * * * * *
12461377 CCAGTGTGTGCCGATGGTGTTTGACGCAACCACCCGCACCAAGGCCATCTTCTGTCGATGGTGGT
1 CCAGCGTGTGTCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCAGCATGTGCCGATGGTGAT
** *
12461442 CGAGGTAAGAGCCCGCACCAAAGG-
66 CGAGGTAATCGCCCGCACC-AGGGC
*** * ** * *
12461466 TTGGCTTGTGTCGATGGTCCTCGAGGCAACCGCCCA-CACAAAGGGCC-GGATTTGTGCCGATGG
1 CCAGCGTGTGTCGATGGTGTTCGAGGCAACCG-CCAGCAC-CAGGGCCAGCA--TGTGCCGATGG
* ** *
12461529 TGCTCGAGCCAATTCGCCCGTACCAGGGC
62 TGATCGAGGTAA-TCGCCCGCACCAGGGC
* * * * *
12461558 CCAGCGTGTGTCGATGGTGTTTGAGCCAACTGCCTA-CACTAGGGCCCAGCATGTACCGATGGTG
1 CCAGCGTGTGTCGATGGTGTTCGAGGCAACCGCC-AGCACCAGGG-CCAGCATGTGCCGATGGTG
* *
12461622 TTCGAGGTAATCGCCTGCACCAGGGC
64 ATCGAGGTAATCGCCCGCACCAGGGC
* * * *
12461648 CCAGCATGTGTCGATGGTGATCGAGGCAACCGCCTGCACCAGGGCCCCAGCATGTGCAGATGG
1 CCAGCGTGTGTCGATGGTGTTCGAGGCAACCGCCAGCACCAGGG--CCAGCATGTGCCGATGG
12461711 CAGTCAAGGC
Statistics
Matches: 252, Mismatches: 68, Indels: 27
0.73 0.20 0.08
Matches are distributed among these distances:
89 54 0.21
90 96 0.38
91 63 0.25
92 37 0.15
93 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (89 bp):
CCAGCGTGTGTCGATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCAGCATGTGCCGATGGTGAT
CGAGGTAATCGCCCGCACCAGGGC
Found at i:12467459 original size:45 final size:45
Alignment explanation
Indices: 12467396--12467787 Score: 232
Period size: 45 Copynumber: 8.7 Consensus size: 45
12467386 ACAGTTGGCT
* * * *
12467396 TGTGTCGATGGTGCTCGAGGCAACCGCCCGTACCAAGGCCCAGTG
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* * *
12467441 TGTGCCGGTGGTGTTCGAGGCAACCACCCGCA-CAAGGGCCCAACG
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAA-GGCCCAGCG
* * * * * * *
12467486 TGTGCCGATGGTGATCGAGGCGATCGCCTGCACTAGGGCCCAGCA
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* * * * *
12467531 TGTGCCGATGGTGTTCGGGGCAACCGCTCGTACCAGGGCCCAACG
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* * * * * ** *
12467576 TATGTCGATGGTGATCGAGGTAACTGCCCGCACTGAGGCCCAGTG
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* *** ** * * * *
12467621 TGTGCCAATGGTGTTCGACTTAACCGCCCATACC-GGGGCCATCT
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* * * * * ** * * ** *
12467665 TCTACCGATGGTGGTCCAGGTAAGAGCCCGCACTAAGGGCTGGCT
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
** * * * *
12467710 TGTATCGATGGTGCTCGAGGTAACCGCCCACACCAGGGCCCAGCG
1 TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
* *
12467755 TGTGCCGAAGGTGTTCG-GTGCAACCGCTCGCAC
1 TGTGCCGATGGTGTTCGAG-GCAACCGCCCGCAC
12467788 TAGGGGCCAT
Statistics
Matches: 252, Mismatches: 91, Indels: 8
0.72 0.26 0.02
Matches are distributed among these distances:
44 31 0.12
45 220 0.87
46 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCG
Found at i:12467660 original size:90 final size:89
Alignment explanation
Indices: 12467398--12467638 Score: 277
Period size: 90 Copynumber: 2.7 Consensus size: 89
12467388 AGTTGGCTTG
* * * * *
12467398 TGTCGATGGTGCTCGAGGCAACCGCCCGTACCAAGGCCCAGTGTGTGCCGGTGGTGTTCGAGGCA
1 TGTCGATGGTGATCGAGGCAACTGCCCGCA-CTAGGCCCAGTGTGTGCCGATGGTGTTCGAGGCA
* * * *
12467463 ACCACCCGCACAAGGGCCCAACGTG
65 ACCGCCCGTACCAGGGCCCAACGTA
* * * ** *
12467488 TGCCGATGGTGATCGAGGCGA-TCGCCTGCACTAGGGCCCAGCATGTGCCGATGGTGTTCGGGGC
1 TGTCGATGGTGATCGAGGCAACT-GCCCGCACTA-GGCCCAGTGTGTGCCGATGGTGTTCGAGGC
*
12467552 AACCGCTCGTACCAGGGCCCAACGTA
64 AACCGCCCGTACCAGGGCCCAACGTA
* *
12467578 TGTCGATGGTGATCGAGGTAACTGCCCGCACTGAGGCCCAGTGTGTGCCAATGGTGTTCGA
1 TGTCGATGGTGATCGAGGCAACTGCCCGCACT-AGGCCCAGTGTGTGCCGATGGTGTTCGA
12467639 CTTAACCGCC
Statistics
Matches: 123, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
89 2 0.02
90 119 0.97
91 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (89 bp):
TGTCGATGGTGATCGAGGCAACTGCCCGCACTAGGCCCAGTGTGTGCCGATGGTGTTCGAGGCAA
CCGCCCGTACCAGGGCCCAACGTA
Found at i:12467838 original size:134 final size:133
Alignment explanation
Indices: 12467580--12467838 Score: 285
Period size: 134 Copynumber: 1.9 Consensus size: 133
12467570 CCAACGTATG
* * * * *
12467580 TCGATGGTGATCGAGGTAACTGCCCGCACTGAGGCCCAGTGTGTGCCAATGGTGTTCGACTTAAC
1 TCGATGGTGATCGAGGTAACCGCCCACACAGAGGCCCAGCGTGTGCCAATGGTGTTCGACTCAAC
* ** * *
12467645 CGCCCATACCGGGGCCATCTTCTACCGATGGTGGTCCAGGTAAGAGCCCGCACTAAGGGCTGGCT
66 CGCCCATA-CGGGGCCATCTTCCACCGATGGTGGTCCAGCCAACAGCCCACACTAAGGGCTGGCT
12467710 TGTA
130 TGTA
* *
12467714 TCGATGGTGCTCGAGGTAACCGCCCACACCAG-GGCCCAGCGTGTGCCGAA-GGTGTTCG-GTGC
1 TCGATGGTGATCGAGGTAACCGCCCACA-CAGAGGCCCAGCGTGTGCC-AATGGTGTTCGACT-C
* * *
12467776 AACCGCTCGCACTA-GGGGCCATCTTCCACTGATGGTGGTCGAGCCAACCGCCCACACT-AGGGC
63 AACCGC-C-CA-TACGGGGCCATCTTCCACCGATGGTGGTCCAGCCAACAGCCCACACTAAGGGC
12467839 CAGCTTATGC
Statistics
Matches: 104, Mismatches: 15, Indels: 12
0.79 0.11 0.09
Matches are distributed among these distances:
133 1 0.01
134 58 0.56
135 41 0.39
136 2 0.02
137 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.20
Consensus pattern (133 bp):
TCGATGGTGATCGAGGTAACCGCCCACACAGAGGCCCAGCGTGTGCCAATGGTGTTCGACTCAAC
CGCCCATACGGGGCCATCTTCCACCGATGGTGGTCCAGCCAACAGCCCACACTAAGGGCTGGCTT
GTA
Found at i:12468832 original size:26 final size:26
Alignment explanation
Indices: 12468803--12468855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12468793 GTTGACTTAG
12468803 GCATACCGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
* *
12468829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
12468855 G
1 G
12468856 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:12476935 original size:45 final size:44
Alignment explanation
Indices: 12476871--12477162 Score: 243
Period size: 45 Copynumber: 6.5 Consensus size: 44
12476861 CGGGCTGGCT
* * *
12476871 TGTGTCGATGGTGCTCGAGGCAACCGCCCACACTAGGGCCTAGCG
1 TGTGTCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCC-AGCG
* *
12476916 TGTGTCGATGGTGTTCGAGGCAACCACCCGCACTAGGGCCAGCG
1 TGTGTCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCAGCG
*
12476960 TGTG-CTGATGGTGTTCG-GTGCAACCGCCTGCACCAGGGCCCAGCG
1 TGTGTC-GATGGTGTTCGAG-GCAACCGCCCGCACCAGGG-CCAGCG
* * * * *
12477005 TGTG-CAGATGGTGTTTG-GTGCAACCGACCGTACCAGGGGCCATCT
1 TGTGTC-GATGGTGTTCGAG-GCAACCGCCCGCACCA-GGGCCAGCG
* ** * * *
12477050 TTTACCGATGGTGGTT-GAGGCAACCACCCGCGCCAGGGCCCAGTG
1 TGTGTCGATGGT-GTTCGAGGCAACCGCCCGCACCAGGG-CCAGCG
* * * *
12477095 TGTGTCGATGGTGCTCGAGGCAACCGCCGGTACCAGGGCCCAGCT
1 TGTGTCGATGGTGTTCGAGGCAACCGCCCGCACCAGGG-CCAGCG
* * *
12477140 TGTGCCGATGGCGGTCGAGGCAA
1 TGTGTCGATGGTGTTCGAGGCAA
12477163 GTGCCCGTAC
Statistics
Matches: 203, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
43 2 0.01
44 40 0.20
45 153 0.75
46 8 0.04
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (44 bp):
TGTGTCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCAGCG
Found at i:12477193 original size:135 final size:135
Alignment explanation
Indices: 12476921--12477199 Score: 291
Period size: 135 Copynumber: 2.1 Consensus size: 135
12476911 TAGCGTGTGT
* *
12476921 CGATGGT-GTTCGAGGCAACCACCCGCACTAGGGCCAGCGTGTGCTGATGGTGTTCGGTGCAACC
1 CGATGGTGGTTCGAGGCAACCACCCGCACCAGGGCCAGCGTGTGCTGATGGTGCTCGGTGCAACC
* * * * * * *
12476985 GCCTGCACCAGGGCCCAGCGTGTGCAGATGGTGTTTGGTGCAACCGACCGTACCAGGGGCCATCT
66 GCCGGCACCAGGGCCCAGCGTGTGCAGATGGCGGTCGGTGCAACCGACCGTACCAAGGGCCAGCC
*
12477050 TTTAC
131 TATAC
* *
12477055 CGATGGTGGTT-GAGGCAACCACCCGCGCCAGGGCCCAGTGTGTG-TCGATGGTGCTCGAG-GCA
1 CGATGGTGGTTCGAGGCAACCACCCGCACCAGGG-CCAGCGTGTGCT-GATGGTGCTCG-GTGCA
* * * ** *
12477117 ACCGCCGGTACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAG-GCAAGTGCCCGTACCAAAGGG-
63 ACCGCCGGCACCAGGGCCCAGCGTGTGCAGATGGCGGTCG-GTGCAACCGACCGTACC-AAGGGC
*
12477180 CAGCCTATGC
126 CAGCCTATAC
*
12477190 CGATGATGGT
1 CGATGGTGGT
12477200 CGATGCATGT
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
134 28 0.24
135 85 0.71
136 6 0.05
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.19
Consensus pattern (135 bp):
CGATGGTGGTTCGAGGCAACCACCCGCACCAGGGCCAGCGTGTGCTGATGGTGCTCGGTGCAACC
GCCGGCACCAGGGCCCAGCGTGTGCAGATGGCGGTCGGTGCAACCGACCGTACCAAGGGCCAGCC
TATAC
Found at i:12478574 original size:160 final size:161
Alignment explanation
Indices: 12478310--12478694 Score: 457
Period size: 161 Copynumber: 2.4 Consensus size: 161
12478300 TTGTGGTAGC
* * * *
12478310 TGGACCGACAGCGAGATCAACAGTAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTAG
1 TGGACCGACAGCGAGATCGACAGCAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCAG
* * ** * *
12478375 CATGCCCCTCTGGCCGGCTCAGTGCCCGCAAGCTCGTTTC-ATTGTTGACTTAGGCATGCGATGT
66 CATGCCCCTCCGACCGGCTCAGTGCCCGCAAGCTCGTTTCGAGGGTTGACTTAGGCATACGAGGT
* *
12478439 TCATTCTTAGTCTAAACCCCAGCCGGACCGA
131 TCATTCCTAGTATAAACCCCAGCCGGACCGA
* * * ** *
12478470 TGGACCGACAGCTAGATTGACAGCAGCACGTAGAGGGGGACCGGGCCGATCGTCGGCTTACGCAT
1 TGGACCGACAGCGAGATCGACAGCAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCAG
* * * * *
12478535 CCTGCCCCTCCGATCGGCTTAGTGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACGGGGT
66 CATGCCCCTCCGACCGGCTCAGTGCCCGCAAGCTCGTTTCGAGGGTTGACTTAGGCATACGAGGT
* *
12478600 TCATTCCTGGTATAAGCCCCAGCCGGACCGA
131 TCATTCCTAGTATAAACCCCAGCCGGACCGA
* ** ** * * * *
12478631 GGGATAGGTAGCGAGATCGACAGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCA
1 TGGACCGACAGCGAGATCGACAGCAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCA
12478695 TCTTGGCTCT
Statistics
Matches: 185, Mismatches: 39, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
160 90 0.49
161 95 0.51
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (161 bp):
TGGACCGACAGCGAGATCGACAGCAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCAG
CATGCCCCTCCGACCGGCTCAGTGCCCGCAAGCTCGTTTCGAGGGTTGACTTAGGCATACGAGGT
TCATTCCTAGTATAAACCCCAGCCGGACCGA
Found at i:12478735 original size:161 final size:161
Alignment explanation
Indices: 12478311--12478756 Score: 408
Period size: 161 Copynumber: 2.8 Consensus size: 161
12478301 TGTGGTAGCT
* * * * * * * * *
12478311 GGACCGACAGCGAGATCAACAGTAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTAGC
1 GGACAGACAGCGAGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATC
* * ** * ** *** * *
12478376 ATGCCCCTCTGGCCGGCTCAGTGCCCGCAAGCTCGTTTC-ATTGTTGACTTAGGCATGCGATGTT
66 CTGCCCCTCCGATCGGCTGACCGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACGAGGTT
* * *
12478440 CATTCTTAGTCTAAACCCCAGCCGGACCGAT
131 CATTCCTAGTATAAACCCCAGCCGGACCGAG
* * * * ** *
12478471 GGACCGACAGCTAGATTGACAGCAGCACGTAGAGGGGGACCGGGCCGATCGTCGGCTTACGCATC
1 GGACAGACAGCGAGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATC
* ** *
12478536 CTGCCCCTCCGATCGGCTTAGTGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACGGGGTT
66 CTGCCCCTCCGATCGGCTGACCGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACGAGGTT
* *
12478601 CATTCCTGGTATAAGCCCCAGCCGGACCGAG
131 CATTCCTAGTATAAACCCCAGCCGGACCGAG
* ** * * *
12478632 GGATAGGTAGCGAGATCGACAGCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATC
1 GGACAGACAGCGAGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATC
* * * * * * * * * *
12478697 TTGGCTCTCCGGTCGTCTGACCGCCTGCACGTTCGTTTCGTGGGTTAACTTAGGCATACG
66 CTGCCCCTCCGATCGGCTGACCGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACG
12478757 TAGTGCATTC
Statistics
Matches: 233, Mismatches: 52, Indels: 1
0.81 0.18 0.00
Matches are distributed among these distances:
160 89 0.38
161 144 0.62
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (161 bp):
GGACAGACAGCGAGATCGACAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATC
CTGCCCCTCCGATCGGCTGACCGCCCGCAAGCTCGTTTCGGGGGTTGACTTAGGCATACGAGGTT
CATTCCTAGTATAAACCCCAGCCGGACCGAG
Found at i:12493570 original size:45 final size:45
Alignment explanation
Indices: 12493521--12493951 Score: 222
Period size: 45 Copynumber: 9.6 Consensus size: 45
12493511 TAAGTACTCA
* * *
12493521 CCTCGATCACCATCGACACAAGCTGGGCCCTGGTGGGGGCAGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * * * ** * *
12493566 CCTCGATCGCAATCGGCACAAG-TCGACCCTTGGTGCTAGCAGTTA
1 CCTCGATCACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGGTTG
* ** ** * * * * * *
12493611 CCTCGACCAGTATCGATACATGCTGGGTCATGGTACGGACTGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * * **
12493656 CATCAAGCACCATCGGCATACGCTGGACCCTGGTGCACGCGGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * * *
12493701 CCTCGAGCACCAAT-GGTAGAAGAT-GGCCTCTGGTGCGGGCGGTTG
1 CCTCGATCACC-ATCGGCACAAGCTGGGCC-CTGGTGCGGGCGGTTG
* * * * * *
12493746 CGTCGAAT-GCTAACGGCACACGCTGGGCCCTGGTGCAGGCGGTTG
1 CCTCG-ATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* *
12493791 CCTCGATCACCATCGGCATACGCTGGGCCCTGGTGCGGGCGGTTG
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * * * * *** ** *
12493836 CCTCAAACACCATTGGCACATGCTGGGCCTTGGTAAAGGCTCTTA
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * ** * * * *
12493881 CCTCGACCACCATCGGTAGGAGATGGCCCCTGGTGCGGACGGTTA
1 CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
* * *
12493926 CCTGGATCACCATCGACACATGCTGG
1 CCTCGATCACCATCGGCACAAGCTGG
12493952 TTGATCACCA
Statistics
Matches: 274, Mismatches: 104, Indels: 16
0.70 0.26 0.04
Matches are distributed among these distances:
44 11 0.04
45 253 0.92
46 10 0.04
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (45 bp):
CCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTG
Found at i:12493854 original size:90 final size:90
Alignment explanation
Indices: 12493652--12493924 Score: 253
Period size: 90 Copynumber: 3.0 Consensus size: 90
12493642 GGTACGGACT
* * * * *
12493652 GTTGCATCAAGCACCATCGGCATACGCTGGACCCTGGTGCACGCGGTTGCCTCGAGCACCAAT-G
1 GTTGCATCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGACCACC-ATCG
*
12493716 GTAGAAGATGGCCTCTGGTGCGGGCG
65 GCAGAAGATGGCCTCTGGTGCGGGCG
* * ** * * *
12493742 GTTGCGTCGAATGCTAACGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGATCACCATCGG
1 GTTGCATCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGG
* * *
12493807 CATACGCTGGGCC-CTGGTGCGGGCG
66 CAGAAGAT-GGCCTCTGGTGCGGGCG
* * * * ** ** *
12493832 GTTGCCTCAAACACCATTGGCACATGCTGGGCCTTGGTAAAGGCTCTTACCTCGACCACCATCGG
1 GTTGCATCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGG
* * * *
12493897 TAGGAGATGGCCCCTGGTGCGGACG
66 CAGAAGATGGCCTCTGGTGCGGGCG
12493922 GTT
1 GTT
12493925 ACCTGGATCA
Statistics
Matches: 144, Mismatches: 36, Indels: 6
0.77 0.19 0.03
Matches are distributed among these distances:
89 6 0.04
90 134 0.93
91 4 0.03
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (90 bp):
GTTGCATCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGACCACCATCGG
CAGAAGATGGCCTCTGGTGCGGGCG
Found at i:12493957 original size:24 final size:24
Alignment explanation
Indices: 12493930--12493975 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
12493920 CGGTTACCTG
* *
12493930 GATCACCATCGACACATGCTGGTT
1 GATCACCATCAACACACGCTGGTT
12493954 GATCACCATCAACACACGCTGG
1 GATCACCATCAACACACGCTGG
12493976 GCCCTGGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.20
Consensus pattern (24 bp):
GATCACCATCAACACACGCTGGTT
Found at i:12494044 original size:45 final size:44
Alignment explanation
Indices: 12493957--12494118 Score: 157
Period size: 45 Copynumber: 3.6 Consensus size: 44
12493947 GCTGGTTGAT
* *
12493957 CACCATCAACACACGCTGGGCCCTGGTGC-AGGCAGTTACCTCGAG
1 CACCATCAGCACACGCTGGGCCCTGGTGCGAGG-A-TTGCCTCGAG
* * *
12494002 CACCATTAGCACACGTTGGGCCCTGGTGCGAGCGATTGCCTCGAT
1 CACCATCAGCACACGCTGGGCCCTGGTGCGAG-GATTGCCTCGAG
* * * * * *
12494047 CACCATCGGCACACGCTAGGCTCTAGTGCGGGTGGTTGCCTCGAG
1 CACCATCAGCACACGCTGGGCCCTGGTGCGAG-GATTGCCTCGAG
*
12494092 CACCATC-GACACACACTGGGCCCTGGT
1 CACCATCAG-CACACGCTGGGCCCTGGT
12494119 AGTAACATCG
Statistics
Matches: 95, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
44 1 0.01
45 90 0.95
46 3 0.03
47 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (44 bp):
CACCATCAGCACACGCTGGGCCCTGGTGCGAGGATTGCCTCGAG
Found at i:12494112 original size:90 final size:90
Alignment explanation
Indices: 12493954--12494118 Score: 206
Period size: 90 Copynumber: 1.8 Consensus size: 90
12493944 CATGCTGGTT
* * * **
12493954 GATCACCATCAACACACGCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATTAGCACACGTT
1 GATCACCATCAACACACGCTAGGCCCTAGTGCAGGCAGTTACCTCGAGCACCATGAGCACACACT
12494019 GGGCCCTGGTGCGAGCGATTGCCTC
66 GGGCCCTGGTGCGAGCGATTGCCTC
** * * ** *
12494044 GATCACCATCGGCACACGCTAGGCTCTAGTGCGGGTGGTTGCCTCGAGCACCATCGA-CACACAC
1 GATCACCATCAACACACGCTAGGCCCTAGTGCAGGCAGTTACCTCGAGCACCAT-GAGCACACAC
12494108 TGGGCCCTGGT
65 TGGGCCCTGGT
12494119 AGTAACATCG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
90 61 0.98
91 1 0.02
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.19
Consensus pattern (90 bp):
GATCACCATCAACACACGCTAGGCCCTAGTGCAGGCAGTTACCTCGAGCACCATGAGCACACACT
GGGCCCTGGTGCGAGCGATTGCCTC
Found at i:12494171 original size:74 final size:74
Alignment explanation
Indices: 12494050--12494193 Score: 218
Period size: 74 Copynumber: 1.9 Consensus size: 74
12494040 CCTCGATCAC
* **
12494050 CATCGGCACACGCTAGGCTCTAGTGCGGGTGGTTGCCTCGAGCACCATCGACACACACTGGGCCC
1 CATCGACACACGCTAGGCTCTAGTGCGGGCAGTTGCCTCGAGCACCATCGACACACACTGGGCCC
12494115 TGGTAGTAA
66 TGGTAGTAA
* * *
12494124 CATCGACACACGCTAGGC-CTTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGGGCC
1 CATCGACACACGCTAGGCTC-TAGTGCGGGCAGTTGCCTCGAGCACCATCGACACACACTGGGCC
12494188 CTGGTA
65 CTGGTA
12494194 CGGGCGGTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 1 0.02
74 62 0.98
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.18
Consensus pattern (74 bp):
CATCGACACACGCTAGGCTCTAGTGCGGGCAGTTGCCTCGAGCACCATCGACACACACTGGGCCC
TGGTAGTAA
Found at i:12494188 original size:164 final size:164
Alignment explanation
Indices: 12493960--12494261 Score: 424
Period size: 164 Copynumber: 1.8 Consensus size: 164
12493950 GGTTGATCAC
* * *
12493960 CATCAACACACGCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATTAGCACACGTTGGGCCC
1 CATCAACACACGCTAGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCAGCACACGCTGGGCCC
* * * * *
12494025 TGGTGCGAGCGATTGCCTCGATCACCATCGGCACACGCTAGGCTCTAGTGCGGGTGGTTGCCTCG
66 TGGTACGAGCGATTGCCTCGAGCACCATCGACACACACTAGGCCCTAGTGCGGGTGGTTGCCTCG
12494090 AGCACCATCGACACACACTGGGCCCTGGTAGTAA
131 AGCACCATCGACACACACTGGGCCCTGGTAGTAA
* * * * *
12494124 CATCGACACACGCTAGGCCTTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
1 CATCAACACACGCTAGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCAGCACACGCTGGGCCC
* * * * * * *
12494189 TGGTACGGGCGGTTGTCTCGAGCACTATCGACACACACTGGGCCCTAGTGTGGGTGGTTGCTTCG
66 TGGTACGAGCGATTGCCTCGAGCACCATCGACACACACTAGGCCCTAGTGCGGGTGGTTGCCTCG
12494254 AGCACCAT
131 AGCACCAT
12494262 TGGCACAAGC
Statistics
Matches: 118, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
164 118 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.20
Consensus pattern (164 bp):
CATCAACACACGCTAGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCAGCACACGCTGGGCCC
TGGTACGAGCGATTGCCTCGAGCACCATCGACACACACTAGGCCCTAGTGCGGGTGGTTGCCTCG
AGCACCATCGACACACACTGGGCCCTGGTAGTAA
Found at i:12494198 original size:45 final size:45
Alignment explanation
Indices: 12494124--12494311 Score: 162
Period size: 45 Copynumber: 4.2 Consensus size: 45
12494114 CTGGTAGTAA
* * * *
12494124 CATCGACACACGCTAGGCCTTGGTGCGGGCAGTTGCCTCGAGCAC
1 CATCGACACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCAC
* *
12494169 CATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGTCTCGAGCAC
1 CATCGACACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCAC
* * * ** * *
12494214 TATCGACACACACTGGGCCCTAGTGTGGGTGGTTGCTTCGAGCAC
1 CATCGACACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCAC
* * * *** ** *
12494259 CATTGGCACAAGC-CAACCCTTGGTACGGGCTCTTGCCTCGACCAC
1 CATCGACACACGCTGGGCCC-TGGTACGGGCGGTTGCCTCGAGCAC
12494304 CATCGACA
1 CATCGACA
12494312 GAAGATGGCC
Statistics
Matches: 109, Mismatches: 33, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
44 3 0.03
45 106 0.97
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (45 bp):
CATCGACACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCAC
Found at i:12494222 original size:119 final size:119
Alignment explanation
Indices: 12494011--12494234 Score: 324
Period size: 119 Copynumber: 1.9 Consensus size: 119
12494001 GCACCATTAG
* * * * *
12494011 CACACGTTGGGCCCTGGTGCGAGCGATTGCCTCGATCACCATCGGCACACGCTAGGCTCTAGTGC
1 CACACGCTAGGCCCTGGTGCGAGCGATTGCCTCGAGCACCATCGGCACACGCTAGGCCCTAGTAC
*
12494076 GGGTGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTGGTAGTAACATCGA
66 GGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTGGTAGTAACATCGA
* * * *
12494130 CACACGCTAGGCCTTGGTGCGGGC-AGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTA
1 CACACGCTAGGCCCTGGTGCGAGCGA-TTGCCTCGAGCACCATCGGCACACGCTAGGCCCTAGTA
* *
12494194 CGGGCGGTTGTCTCGAGCACTATCGACACACACTGGGCCCT
65 CGGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCT
12494235 AGTGTGGGTG
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
118 1 0.01
119 91 0.99
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (119 bp):
CACACGCTAGGCCCTGGTGCGAGCGATTGCCTCGAGCACCATCGGCACACGCTAGGCCCTAGTAC
GGGCGGTTGCCTCGAGCACCATCGACACACACTGGGCCCTGGTAGTAACATCGA
Found at i:12494357 original size:32 final size:32
Alignment explanation
Indices: 12494285--12494357 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
12494275 CCCTTGGTAC
* *
12494285 GGGCTCTTGCCTCGACCACCATCGACAGAAGAT
1 GGGC-CTTGCCTCGAACACCATCGACACAAGAT
* * * * *
12494318 GGCCCTTGCGTCGAACACCATCGGCACACGCT
1 GGGCCTTGCCTCGAACACCATCGACACAAGAT
12494350 GGGCCTTG
1 GGGCCTTG
12494358 GTGTGGGCAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 29 0.91
33 3 0.09
ACGTcount: A:0.19, C:0.36, G:0.27, T:0.18
Consensus pattern (32 bp):
GGGCCTTGCCTCGAACACCATCGACACAAGAT
Found at i:12500987 original size:26 final size:26
Alignment explanation
Indices: 12500936--12500993 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
12500926 CCGGTCCAAT
**
12500936 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
12500962 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
12500988 CCTAAA
1 CTTAAA
12500994 TCAACCCACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:12502052 original size:45 final size:45
Alignment explanation
Indices: 12501891--12502056 Score: 142
Period size: 45 Copynumber: 3.7 Consensus size: 45
12501881 CATATGCATT
* * * *
12501891 GACCATCATCGGCACAGGCT-GCCCTTTGGTACAGGC-ACTTGCCTC
1 GACCACCATCGGCACAAGCTGGCCC-TTGGTGCGGGCGA-TTGCCTC
* * *
12501936 GACCACCATCGACACAAG-TGGGCCC-TGGTGCGAGCGGTTGCCTC
1 GACCACCATCGGCACAAGCT-GGCCCTTGGTGCGGGCGATTGCCTC
* ** * * *
12501980 GATCACCATCATCCCATGCTGGGCCTTGGTGCGGGCGATTGCCTC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGATTGCCTC
* *
12502025 GACCAACATCGGCACAAGCTGACCCTTGGTGC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGC
12502057 AGGTGTCACA
Statistics
Matches: 93, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
44 32 0.34
45 57 0.61
46 4 0.04
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGATTGCCTC
Found at i:12502925 original size:45 final size:44
Alignment explanation
Indices: 12502872--12503029 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 44
12502862 GCAGTTGCAC
* * *
12502872 CGAACACCATCGGCACACGTTGGGCCTTGGTACGAGTGATTGCCT
1 CGAACACCATCGGCACACGCTGGGCCTTGGTGCG-GCGATTGCCT
* * * * **
12502917 CGATCACCATCAGCACACGCTGGGCCCTGGTGCGGGCGGTTAACT
1 CGAACACCATCGGCACACGCTGGGCCTTGGTGC-GGCGATTGCCT
**
12502962 CGAACACCATCGGCACGTGCTGGGCCTTGGTGCGGCCGATTGCCT
1 CGAACACCATCGGCACACGCTGGGCCTTGGTGCGG-CGATTGCCT
* *
12503007 CGAGCACCATCGACACACGCTGG
1 CGAACACCATCGGCACACGCTGG
12503030 TCAATCACTA
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 2 0.02
45 87 0.97
46 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (44 bp):
CGAACACCATCGGCACACGCTGGGCCTTGGTGCGGCGATTGCCT
Found at i:12502925 original size:90 final size:90
Alignment explanation
Indices: 12502841--12503029 Score: 222
Period size: 90 Copynumber: 2.1 Consensus size: 90
12502831 CACCATTGGG
* * *
12502841 ACACGTTGGGCCCCGATGCAGGCAGTTGCAC-CGAACACCATCGGCACACGTTGGGCCTTGGTAC
1 ACACGCTGGGCCCCGATGCAGGCAGTT-AACTCGAACACCATCGGCACACGCTGGGCCTTGGTAC
* *
12502905 GAG-TGATTGCCTCGATCACCATCAGC
65 G-GCCGATTGCCTCGAGCACCATCAGC
* * * * ** *
12502931 ACACGCTGGGCCCTGGTGCGGGCGGTTAACTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCG
1 ACACGCTGGGCCCCGATGCAGGCAGTTAACTCGAACACCATCGGCACACGCTGGGCCTTGGTACG
12502996 GCCGATTGCCTCGAGCACCATC-GAC
66 GCCGATTGCCTCGAGCACCATCAG-C
12503021 ACACGCTGG
1 ACACGCTGG
12503030 TCAATCACTA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
89 4 0.05
90 80 0.95
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.18
Consensus pattern (90 bp):
ACACGCTGGGCCCCGATGCAGGCAGTTAACTCGAACACCATCGGCACACGCTGGGCCTTGGTACG
GCCGATTGCCTCGAGCACCATCAGC
Found at i:12503015 original size:135 final size:135
Alignment explanation
Indices: 12502681--12503025 Score: 315
Period size: 135 Copynumber: 2.6 Consensus size: 135
12502671 CTATGACACA
* * * * * * * * * ** *
12502681 GGCGGTTACCTCGACCACTATCGGTACATGCTGGGTCGTGGTGCGGGCTATTGTATCGAGCACTA
1 GGCGGTTAACTCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGCCGATTGCCTCGAGCACCA
** * * *
12502746 TATGCACACGTTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATCAGAAGAAGATGGCCCTTG
66 TCGGCACACGTTGGGCCCTGGTACGAGCGATTGCCTCGACCACCATCAGAACAAGATGGCCCTTG
12502811 GTGCG
131 GTGCG
* * * * * *
12502816 GGCGGTT-ACGTCAAACACCATTGGGACACGT--TGGGCCCCGATGCAGGCAG-TTGCAC-CGAA
1 GGCGGTTAAC-TCGAACACCA-TCGG-CACGTGCTGGGCCCTGGTGC-GGCCGATTGC-CTCGAG
* * * * * *
12502876 CACCATCGGCACACGTTGGGCCTTGGTACGAGTGATTGCCTCGATCACCATCAGCACACGCTGGG
61 CACCATCGGCACACGTTGGGCCCTGGTACGAGCGATTGCCTCGACCACCATCAGAACAAGAT-GG
12502941 CCC-TGGTGCG
125 CCCTTGGTGCG
*
12502951 GGCGGTTAACTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCGGCCGATTGCCTCGAGCACCA
1 GGCGGTTAACTCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGCCGATTGCCTCGAGCACCA
*
12503016 TCGACACACG
66 TCGGCACACG
12503026 CTGGTCAATC
Statistics
Matches: 162, Mismatches: 37, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
133 5 0.03
134 9 0.06
135 133 0.82
136 12 0.07
137 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (135 bp):
GGCGGTTAACTCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGCCGATTGCCTCGAGCACCA
TCGGCACACGTTGGGCCCTGGTACGAGCGATTGCCTCGACCACCATCAGAACAAGATGGCCCTTG
GTGCG
Found at i:12503191 original size:69 final size:69
Alignment explanation
Indices: 12503075--12503208 Score: 187
Period size: 69 Copynumber: 1.9 Consensus size: 69
12503065 GACGGTTACC
*** * *
12503075 TCGAACACCATCGGCACGTGCTGGGCCTTGGTGCGGGTAGTTGCCTCGAGCACCATCGACACACG
1 TCGAACACCATCGGCAAACGCTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGACACACG
12503140 TTGG
66 TTGG
* * * *
12503144 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGACACACG
1 TCGAACACCATCGGCAAACGCTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGACACACG
12503209 CTGGGACCTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (69 bp):
TCGAACACCATCGGCAAACGCTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGACACACG
TTGG
Found at i:12503210 original size:45 final size:45
Alignment explanation
Indices: 12503144--12503790 Score: 561
Period size: 45 Copynumber: 14.4 Consensus size: 45
12503134 CACACGTTGG
* *
12503144 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * *
12503189 TCGATCACCATCGACACACGCTGGGACCTGGTGCGGGCGGATGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * *
12503234 TCGAGCACCATCGACACACGTTGGGCCCTGGTGCGAGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * * * * *
12503279 TCAAGCACCATTGACAGAAGATGGCCCCTGGGGCGGGCGGTTGCG
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * ** *
12503324 TCGAACACCATCGGCACACGTTGGGCCCTGGTATGGGCAGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * **
12503369 TCGATCACCATCGACACACGCTAGGCCCTAGTACGGATGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * *
12503414 TCAAGCACCATCGGCACACGCTAGGCCCTAGTACGGGCGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * *
12503459 TCGATCACCATTGGCACACGTTAGGCCCTGGT-CTGGGCGGTTGCT
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGC-GGGCGGTTGCC
* * * *
12503504 TGGAACACTATCGGCACACGCT--GCCCTGGTGCGGACGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* ** *
12503547 TCGATCACCATCGGCATACATTGGGCCCTGGTGAGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * ** *
12503592 TGGAACACCATCGGCACACGCTAAGCCCTGGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * *
12503637 TCGATCAGCATCAGCACATGCTGGGCCTTAGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * *
12503682 TCGAGCACCGTTGACACAC-CTTAGGCTCTGGTGCAGGCAGGTT-CC
1 TCGATCACCATCGGCACACGC-TGGGCCCTGGTGCGGGC-GGTTGCC
* * *
12503727 TCGAGT-ACCATCGACACACGC-GAGGCCCTGGTGTGGGCAGTTGCC
1 TCGA-TCACCATCGGCACACGCTG-GGCCCTGGTGCGGGCGGTTGCC
*
12503772 TCGAACACCATCGGCACAC
1 TCGATCACCATCGGCACAC
12503791 AGTGGTCAAT
Statistics
Matches: 480, Mismatches: 111, Indels: 22
0.78 0.18 0.04
Matches are distributed among these distances:
43 33 0.07
44 6 0.01
45 436 0.91
46 5 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
Found at i:12503254 original size:114 final size:114
Alignment explanation
Indices: 12502916--12503257 Score: 490
Period size: 114 Copynumber: 3.0 Consensus size: 114
12502906 AGTGATTGCC
* * *
12502916 TCGATCACCATCAGCACACGCTGGGCCCTGGTGCGGGCGGTTAACTCGAACACCATCGGCACGTG
1 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACGTG
* *
12502981 CTGGGCCTTGGTGC-GGCCGATTGCCTCGAGCACCATCGACACACGCTGG
66 CTGGGCCTTGGTGCGGGCAGA-TGCCTCGAGCACCATCGACACACGTTGG
* * * *
12503030 TCAATCACTATCGGTAAACGCTGGGCCCTGGTGCGGACGGTTACCTCGAACACCATCGGCACGTG
1 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACGTG
* *
12503095 CTGGGCCTTGGTGCGGGTAGTTGCCTCGAGCACCATCGACACACGTTGG
66 CTGGGCCTTGGTGCGGGCAGATGCCTCGAGCACCATCGACACACGTTGG
* * * * **
12503144 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGACACACG
1 TCGATCACCATCGGCAAACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACGTG
*
12503209 CTGGGACC-TGGTGCGGGCGGATGCCTCGAGCACCATCGACACACGTTGG
66 CTGGG-CCTTGGTGCGGGCAGATGCCTCGAGCACCATCGACACACGTTGG
12503258 GCCCTGGTGC
Statistics
Matches: 202, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
114 197 0.98
115 5 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (114 bp):
TCGATCACCATCGGCAAACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACGTG
CTGGGCCTTGGTGCGGGCAGATGCCTCGAGCACCATCGACACACGTTGG
Found at i:12503612 original size:223 final size:223
Alignment explanation
Indices: 12503304--12503791 Score: 525
Period size: 223 Copynumber: 2.2 Consensus size: 223
12503294 AGAAGATGGC
* * *
12503304 CCCTGGGGCGGGCGGTTGCGTCGAACACCATCGGCACACGTTGGGCCCTGGTATGGGCAGTTGCC
1 CCCTGGGGCGGACGGTTGCCTCGAACACCATCGGCACACATTGGGCCCTGGTATGGGCAGTTGCC
* * * *
12503369 TCGATCACCATCGACACACGCTAGGCCCTAGTACGGATGGTTGCCTCAAGCACCATCGGCACACG
66 TCGAACACCATCGACACACGCTAAGCCCTAGTACGGACGGTTGCCTCAAGCACCATCAGCACACG
* * *
12503434 CTAGGCCCTAGTACGGGCGGTTACCTCGATCACCATTGGCACACGTTAGGCCCTGGTCTGGGCGG
131 CTAGGCCCTAGTACGGGCGGTTACCTCGAGCACCATTGACACACCTTAGGCCCTGGTCTGGGCGG
12503499 TTGCTTGGAACACTATCGGCACACGCTG
196 TTGCTTGGAACACTATCGGCACACGCTG
* * * *
12503527 CCCTGGTGCGGACGGTTGCCTCGATCACCATCGGCATACATTGGGCCCTGGTGA-GGGCGGTTGC
1 CCCTGGGGCGGACGGTTGCCTCGAACACCATCGGCACACATTGGGCCCTGGT-ATGGGCAGTTGC
* * * ** * * * * *
12503591 CTGGAACACCATCGGCACACGCTAAGCCCTGGTGTGGGCGGTTGCCTCGATCAGCATCAGCACAT
65 CTCGAACACCATCGACACACGCTAAGCCCTAGTACGGACGGTTGCCTCAAGCACCATCAGCACAC
* * ** * * * *
12503656 GCTGGGCCTTAGTGTGGGCGGTTGCCTCGAGCACCGTTGACACACCTTAGGCTCTGGTGC-AGGC
130 GCTAGGCCCTAGTACGGGCGGTTACCTCGAGCACCATTGACACACCTTAGGCCCTGGT-CTGGGC
* * * * *
12503720 AGGTTCCTCGAGTAC-C-ATCGACACACGCGAGG
194 -GGTTGCTTG-GAACACTATCGGCACACGC--TG
* * * *
12503752 CCCTGGTGTGGGCAGTTGCCTCGAACACCATCGGCACACA
1 CCCTGGGGCGGACGGTTGCCTCGAACACCATCGGCACACA
12503792 GTGGTCAATC
Statistics
Matches: 217, Mismatches: 42, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
223 168 0.77
224 10 0.05
225 39 0.18
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (223 bp):
CCCTGGGGCGGACGGTTGCCTCGAACACCATCGGCACACATTGGGCCCTGGTATGGGCAGTTGCC
TCGAACACCATCGACACACGCTAAGCCCTAGTACGGACGGTTGCCTCAAGCACCATCAGCACACG
CTAGGCCCTAGTACGGGCGGTTACCTCGAGCACCATTGACACACCTTAGGCCCTGGTCTGGGCGG
TTGCTTGGAACACTATCGGCACACGCTG
Found at i:12503929 original size:44 final size:44
Alignment explanation
Indices: 12503799--12503940 Score: 153
Period size: 45 Copynumber: 3.2 Consensus size: 44
12503789 ACAGTGGTCA
* *
12503799 ATCACCATTGGCACATGCTGGGCCCTGGTACGGGCAGTTGCCTCG
1 ATCACCATTGGCACA-GCTGGGCCCTGGTGCGGGCGGTTGCCTCG
* * * *
12503844 ATCACCATCGGCACATGCTGGGCCCTAGTGCGAGCGATTGCCTCG
1 ATCACCATTGGCACA-GCTGGGCCCTGGTGCGGGCGGTTGCCTCG
* * *
12503889 ATCACCATTGGCGCA-CTAGGGCCCTGGTGTGGGTGGTTGCCTCG
1 ATCACCATTGGCACAGCT-GGGCCCTGGTGCGGGCGGTTGCCTCG
12503933 -TGCACCAT
1 AT-CACCAT
12503941 CAACATACGC
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
43 3 0.04
44 27 0.33
45 52 0.63
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (44 bp):
ATCACCATTGGCACAGCTGGGCCCTGGTGCGGGCGGTTGCCTCG
Found at i:12503955 original size:158 final size:159
Alignment explanation
Indices: 12503725--12504100 Score: 472
Period size: 158 Copynumber: 2.4 Consensus size: 159
12503715 CAGGCAGGTT
* * **
12503725 CCTCGAGT-ACCATCGACACACGC-GAGGCCCTGGTGTGGGCAGTTGCCTCGAACACCATCGGCA
1 CCTCGA-TCACCATCGACACACGCAG-GGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATCAACA
** * * *
12503788 CACAGTGGTCAATCACCATTGGCACATGCTGGGCCCTGGTACGGGCAGTTGCCTCGATCACCATC
64 CACAGTGGTCAATCACCATCAGCACACGCTGGGCCCTGGTACGAGCAGTTACCTCGATCACCATC
12503853 GGCACATGCTGGGCCCTAGTGCGAGCGATTG
129 GGCACATGCTGGGCCCTAGTGCGAGCGATTG
* * * * * * *
12503884 CCTCGATCACCATTGGCGCAC-TAGGGCCCTGGTGTGGGTGGTTGCCTCGTGCACCATCAACATA
1 CCTCGATCACCATCGACACACGCAGGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATCAACACA
* * * * * *
12503948 C-GCTGGTCGATCACCATCAGCACACGTTGGTCCCTGGTGCGAGCGGTTACTTCGATCACCATCG
66 CAG-TGGTCAATCACCATCAGCACACGCTGGGCCCTGGTACGAGCAGTTACCTCGATCACCATCG
12504012 GCACATGCTGGGCCCTAGTGCGAGCGATTG
130 GCACATGCTGGGCCCTAGTGCGAGCGATTG
* * *
12504042 CCTCGATCACCATCGACACACGCAGGGCCCTGGTGTAGGCGATTGCCTCCAGCACCATC
1 CCTCGATCACCATCGACACACGCAGGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATC
12504101 GGCACACGTT
Statistics
Matches: 182, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 133 0.73
159 48 0.26
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (159 bp):
CCTCGATCACCATCGACACACGCAGGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATCAACACA
CAGTGGTCAATCACCATCAGCACACGCTGGGCCCTGGTACGAGCAGTTACCTCGATCACCATCGG
CACATGCTGGGCCCTAGTGCGAGCGATTG
Found at i:12504033 original size:45 final size:45
Alignment explanation
Indices: 12503954--12504146 Score: 217
Period size: 45 Copynumber: 4.3 Consensus size: 45
12503944 CATACGCTGG
* * * * *
12503954 TCGATCACCATCAGCACACGTTGGTCCCTGGTGCGAGCGGTTACT
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGATTACC
* * *
12503999 TCGATCACCATCGGCACATGCTGGGCCCTAGTGCGAGCGATTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGATTACC
* * * *
12504044 TCGATCACCATCGACACACGCAGGGCCCTGGTG-TAGGCGATTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGA-GCGATTACC
* * * *
12504089 TCCAGCACCATCGGCACACGTTGGGCCCTGGTGCGAGCGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGATTACC
*
12504134 TCGAGCACCATCG
1 TCGATCACCATCG
12504147 CATAAGCCGG
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
44 1 0.01
45 122 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGATTACC
Found at i:12511314 original size:171 final size:171
Alignment explanation
Indices: 12510948--12511318 Score: 412
Period size: 171 Copynumber: 2.2 Consensus size: 171
12510938 ATCCTGCTGT
* * * * ** ** * * *
12510948 CGGTCTGATCTTAGATTGAGAATGAACTCTGTATGGCTAAGTTAACCCACGAAACGAGTGTGCGG
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGG
* * * *
12511013 GAGCTGAGCCAATCGGAGAGGCATAATGCGTAAGCCGGGGATCACCCCGGTCCCCCTCTATGTGC
66 GAGCTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCACCCCGGTCCCCCCCTATGTGC
12511078 TGCCGATCCCGCTGTCGGTCCAGCTACCACAACCCTCGGTC
131 TGCCGATCCCGCTGTCGGTCCAGCTACCACAACCCTCGGTC
* * * *
12511119 TGG-CTGGGTCTAAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTAC
1 CGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTAC
* * * *
12511182 GGGCA-CTCAGCCGACCGGAGAGGCAGGATGCGTAAGCTGGGGATCGA-CCCGGTCCCCCCCTGT
64 GGG-AGCTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATC-ACCCCGGTCCCCCCCTAT
* * *
12511245 GTGCTGTCGATCCCGTTG-CTGGTCCTA-CTACTACAACCCTCGGTC
127 GTGCTGCCGATCCCGCTGTC-GGTCC-AGCTACCACAACCCTCGGTC
12511290 CGGTCCGATCTTAGACTGGGAATGAACTC
1 CGGTCCGATCTTAGACTGGGAATGAACTC
12511319 TGTGTGCTTA
Statistics
Matches: 163, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
170 3 0.02
171 155 0.95
172 5 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGG
GAGCTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCACCCCGGTCCCCCCCTATGTGC
TGCCGATCCCGCTGTCGGTCCAGCTACCACAACCCTCGGTC
Found at i:12511483 original size:197 final size:197
Alignment explanation
Indices: 12511137--12511514 Score: 470
Period size: 197 Copynumber: 1.9 Consensus size: 197
12511127 TCTAAGACAT
*
12511137 GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGACCGGAG
1 GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAG
* ** * * * * * *
12511202 AGGCAGGATGCGTAAGCTGGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATCCCGTTGCTGG
66 AGGCAGAATGCACAAGCTGAGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCGCTACGGG
* * * * *
12511267 TCCTACTACTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTGTGCTTAGAC
131 TCCTACTACCACAACCCTCGATCCAGTCCGATCTCAGACTGGAAATGAACTCTGTGTGCTTAGAC
12511332 TG
196 TG
* * ** * * * *
12511334 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGATCGTGCGGGCGCTCAGTCGACCAGAG
1 GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAG
* *
12511399 AGGTAGAATGCACAAG-TCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACGG
66 AGGCAGAATGCACAAGCT-GAGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCGCTACGG
* * * * *
12511463 GTCCTGCTGCCACGACCCTCGATCTAGTCTGATCTCAGACTGGAAATGAACT
130 GTCCTACTACCACAACCCTCGATCCAGTCCGATCTCAGACTGGAAATGAACT
12511515 TCGTATGCCT
Statistics
Matches: 150, Mismatches: 30, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
196 1 0.01
197 149 0.99
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (197 bp):
GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAG
AGGCAGAATGCACAAGCTGAGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCGCTACGGG
TCCTACTACCACAACCCTCGATCCAGTCCGATCTCAGACTGGAAATGAACTCTGTGTGCTTAGAC
TG
Found at i:12518242 original size:45 final size:46
Alignment explanation
Indices: 12518191--12518319 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
12518181 AGGGCATGAC
* * *
12518191 ACGGGCACTTACCCCAACCACCATCGGCACAAGTTGGGCCC-TGGT
1 ACGGGCAGTTACCTCGACCACCATCGGCACAAGTTGGGCCCTTGGT
* * * **
12518236 ACGGGCAGTTGCCTTGACCACCATCGGGTACAAG-CCGGCCCTTGGT
1 ACGGGCAGTTACCTCGACCACCATC-GGCACAAGTTGGGCCCTTGGT
* * *
12518282 ACGGGCGGTTACCTCGACAACCATCGGCACATGTTGGG
1 ACGGGCAGTTACCTCGACCACCATCGGCACAAGTTGGG
12518320 TCGTGGTGTG
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
45 31 0.48
46 34 0.52
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (46 bp):
ACGGGCAGTTACCTCGACCACCATCGGCACAAGTTGGGCCCTTGGT
Found at i:12518529 original size:45 final size:45
Alignment explanation
Indices: 12518474--12518632 Score: 185
Period size: 45 Copynumber: 3.5 Consensus size: 45
12518464 GGCAGTCACG
* *
12518474 TCGAATACCATCGACACACGCTGGGCCCTGGTGCGGGTGATTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGCGGGCGATTGCC
* * * *
12518519 TCGATCACCATCCG-TACATGCTGGGCCCTGGTGAGGGCGATTGCC
1 TCGAACACCAT-CGACACACGCTGGGCCCTGGTGCGGGCGATTGCC
* ** * * *
12518564 TCGAACACCATCGGCACGTGCTGGGCCTTGGTGCAGGCGGTTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGCGGGCGATTGCC
*
12518609 TCGAGCACCATCGACACACGCTGG
1 TCGAACACCATCGACACACGCTGG
12518633 TCGATCACCA
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.02
45 91 0.96
46 2 0.02
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.19
Consensus pattern (45 bp):
TCGAACACCATCGACACACGCTGGGCCCTGGTGCGGGCGATTGCC
Found at i:12518705 original size:45 final size:45
Alignment explanation
Indices: 12518656--12518963 Score: 253
Period size: 45 Copynumber: 6.8 Consensus size: 45
12518646 ACACACGTTA
* * * * *
12518656 GGCCCTGGTACGGGCAGTTGCCTCGAGCACCATCGACATATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
* * * * * *
12518701 GGCCCTGGTGCGGGCGGTTACCT-TAAGCACCATCGGTAAAAGAT-
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACATGCTG
* * * *
12518745 GGCCCTTGGTGCGGGTGGTTGTGC-CGAACACCATCGGTACACGCTG
1 GGCCC-TGGTGCGGGCGGTTG-CCTCGAACACCATCGGCACATGCTG
* * *
12518791 GGCCCTGGTGCGGACGGTTGCCTCGATCACCATCTGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
* ** * *
12518836 GGCCCTGGTGTGGGCAATTGCCTCGAACATCATCGGCACGTGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
* * * ** * * * * *
12518881 GGCCTTGGTACGAGCTCTTGCCTTGACCACCATCGGCAAAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
* *
12518926 GCCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCA
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCA
12518964 TGCTGGTCGA
Statistics
Matches: 204, Mismatches: 53, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
44 7 0.03
45 189 0.93
46 8 0.04
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
Found at i:12518765 original size:159 final size:159
Alignment explanation
Indices: 12518480--12518791 Score: 346
Period size: 159 Copynumber: 2.0 Consensus size: 159
12518470 CACGTCGAAT
* * * * *
12518480 ACCATCGACACACGCTGGGCCCTGGTGCGGGTGATTGCCTCGATCACCATCCGTACATGCTGGGC
1 ACCATCAACACACGCTAGGCCCTGGTACGGGAGATTGCCTCGAGCACCATCCGTACATGCTGGGC
* *** * *
12518545 CCTGGTGAGGGCGATTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCAGGCGGTTG-CC
66 CCTGGTGAGGGCGATTACCTCGAACACCATCGGCAAAAGATGGCCCTTGGTGCAGGCGGTTGTCC
*
12518609 TCGAGCACCATCGACACACGCTGGTCGATC
131 -CGAACACCATCGACACACGCTGGTCGATC
*
12518639 ACCATCAACACACGTTAGGCCCTGGTACGGGCAG-TTGCCTCGAGCACCAT-CG-ACATATGCTG
1 ACCATCAACACACGCTAGGCCCTGGTACGGG-AGATTGCCTCGAGCACCATCCGTAC--ATGCTG
* * * * * *
12518701 GGCCCTGGTGCGGGCGGTTACCT-TAAGCACCATCGGTAAAAGATGGCCCTTGGTGCGGGTGGTT
63 GGCCCTGGTGAGGGCGATTACCTCGAA-CACCATCGGCAAAAGATGGCCCTTGGTGCAGGCGGTT
* **
12518765 GTGCCGAACACCATCGGTACACGCTGG
127 GTCCCGAACACCATCGACACACGCTGG
12518792 GCCCTGGTGC
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.02
158 4 0.03
159 118 0.94
160 2 0.02
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (159 bp):
ACCATCAACACACGCTAGGCCCTGGTACGGGAGATTGCCTCGAGCACCATCCGTACATGCTGGGC
CCTGGTGAGGGCGATTACCTCGAACACCATCGGCAAAAGATGGCCCTTGGTGCAGGCGGTTGTCC
CGAACACCATCGACACACGCTGGTCGATC
Found at i:12519040 original size:45 final size:45
Alignment explanation
Indices: 12518970--12519072 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 45
12518960 GGCATGCTGG
* * *
12518970 TCGAGCACCATCGGCACACGCTGGGCCTTGGTGC-AGGCGGTTGCC
1 TCGAGCACCATCGACACACGCTGGGCCCTGGTACGA-GCGGTTGCC
* * *
12519015 TCGATCACCATCGACACACGTTGGGCCCTGGTACGAGCGGTTTCC
1 TCGAGCACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCC
12519060 TCGAGCACCATCG
1 TCGAGCACCATCG
12519073 GCAAATGCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 49 0.98
46 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (45 bp):
TCGAGCACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCC
Found at i:12519127 original size:114 final size:113
Alignment explanation
Indices: 12518928--12519303 Score: 384
Period size: 114 Copynumber: 3.3 Consensus size: 113
12518918 AAAAGATGGC
* * * **
12518928 CCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGC--ATGCTGGTCGAGCACCATCGGCACACGC
1 CCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCAAATGCTGGTCGATCACCATCGG-ACACAT
* * *
12518991 TGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGACACACGTTGGG
65 TGGGCCCTGGTGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGG
* *
12519040 CCCTGGTACGAGCGGTTTCCTCGAGCACCATCGGCAAATGCTGGTCGATCACCATCGGAACACAT
1 CCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCAAATGCTGGTCGATCACCATCGG-ACACAT
* *
12519105 TGGGCCCTGGTGC-GAGCGGTTGCCTCGAGCACCATCGACACATGCTGGG
65 TGGGCCCTGGTGCAG-GCGGTTGCCTCGAACACCATCGACACACGCTGGG
* * * * * *** *
12519154 CCCTGGT-CCAGGCGTTTGCCTCAAACACCACCAATAAATGCTAGTCGATCACCATC-GACACAT
1 CCCTGGTACGA-GCGGTTGCCTCGATCACCATCGGCAAATGCTGGTCGATCACCATCGGACACAT
* * ** *
12519217 GCTAGGCCCTGGTGTAGGCGGTTGCCTTAAACACCATCGACACACACTGGG
65 --TGGGCCCTGGTGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGG
* * * * *
12519268 CTCGGGTACGGGCGGTTGCCTTGATCACCATTGGCA
1 CCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCA
12519304 CACGCTGGGC
Statistics
Matches: 214, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
112 37 0.17
113 4 0.02
114 171 0.80
115 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (113 bp):
CCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCAAATGCTGGTCGATCACCATCGGACACATT
GGGCCCTGGTGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGG
Found at i:12519131 original size:69 final size:69
Alignment explanation
Indices: 12519015--12519152 Score: 215
Period size: 69 Copynumber: 2.0 Consensus size: 69
12519005 GGCGGTTGCC
* * *
12519015 TCGATCACCATCGACACACGTTGGGCCCTGGTACGAGCGGTTTCCTCGAGCACCATCGGCAAATG
1 TCGATCACCATCGACACACATTGGGCCCTGGTACGAGCGGTTGCCTCGAGCACCATCGACAAATG
12519080 CTGG
66 CTGG
* *
12519084 TCGATCACCATCGGA-ACACATTGGGCCCTGGTGCGAGCGGTTGCCTCGAGCACCATCGACACAT
1 TCGATCACCATC-GACACACATTGGGCCCTGGTACGAGCGGTTGCCTCGAGCACCATCGACAAAT
12519148 GCTGG
65 GCTGG
12519153 GCCCTGGTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
69 61 0.97
70 2 0.03
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (69 bp):
TCGATCACCATCGACACACATTGGGCCCTGGTACGAGCGGTTGCCTCGAGCACCATCGACAAATG
CTGG
Found at i:12519173 original size:45 final size:45
Alignment explanation
Indices: 12519084--12519175 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 45
12519074 CAAATGCTGG
* *
12519084 TCGATCACCATCGGAACACATTGGGCCCTGGTGCGAGCGGTTGCC
1 TCGAGCACCATCGGAACACATTGGGCCCTGGTCCGAGCGGTTGCC
*
12519129 TCGAGCACCATC-G-ACACATGCTGGGCCCTGGTCC-AGGCGTTTGCC
1 TCGAGCACCATCGGAACACAT--TGGGCCCTGGTCCGA-GCGGTTGCC
12519174 TC
1 TC
12519176 AAACACCACC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
43 6 0.15
44 2 0.05
45 33 0.80
ACGTcount: A:0.16, C:0.34, G:0.29, T:0.21
Consensus pattern (45 bp):
TCGAGCACCATCGGAACACATTGGGCCCTGGTCCGAGCGGTTGCC
Found at i:12519282 original size:45 final size:45
Alignment explanation
Indices: 12519233--12519336 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 45
12519223 CCCTGGTGTA
* *
12519233 GGCGGTTGCCTTAAACACCATCGACACACACTGGGCTCGGGTACG
1 GGCGGTTGCCTTAAACACCATCGACACACACTGGGCCCCGGTACG
* * * * * *
12519278 GGCGGTTGCCTTGATCACCATTGGCACACGCTGGGCCCCGGTGCG
1 GGCGGTTGCCTTAAACACCATCGACACACACTGGGCCCCGGTACG
*
12519323 AGCGGTTGCCTTAA
1 GGCGGTTGCCTTAA
12519337 GCATTATCGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (45 bp):
GGCGGTTGCCTTAAACACCATCGACACACACTGGGCCCCGGTACG
Found at i:12519559 original size:88 final size:88
Alignment explanation
Indices: 12519359--12519591 Score: 315
Period size: 88 Copynumber: 2.6 Consensus size: 88
12519349 ACGCTGGTCT
* * *
12519359 ATCACCATCGGGACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCATCGGGACACGCTG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATCACCATC--GACACGCTG
** *
12519424 AGCCCTGGTGTGGGCGATTGCCTCG
64 AGCCCTGGTACGAGCGATTGCCTCG
* * * *
12519449 ATCACCATCAGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATTACCATCGACACGTTGGG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATCACCATCGACACGCTGAG
*
12519514 CCCTGGTACGAGCGGTTGCCTCG
66 CCCTGGTACGAGCGATTGCCTCG
* *
12519537 AGT-ACCATCGGCACACGTTGGGCCCTGGTGCGAGCGGTTGCCTCGAGCACCATCG
1 A-TCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATCACCATCG
12519592 GCACATACTA
Statistics
Matches: 127, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
88 77 0.61
89 1 0.01
90 49 0.39
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.20
Consensus pattern (88 bp):
ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATCACCATCGACACGCTGAG
CCCTGGTACGAGCGATTGCCTCG
Found at i:12519593 original size:45 final size:45
Alignment explanation
Indices: 12519359--12519596 Score: 320
Period size: 45 Copynumber: 5.3 Consensus size: 45
12519349 ACGCTGGTCT
* * *
12519359 ATCACCATCGGGACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
* * * * *
12519404 ATCACCATCGGGACACGCTGAGCCCTGGTGTGGGCGATTGCCTCG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
*
12519449 ATCACCATCAGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
* * *
12519494 ATTACCATC-G-ACACGTTGGGCCCTGGTACGAGCGGTTGCCTCG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
*
12519537 AGT-ACCATCGGCACACGTTGGGCCCTGGTGCGAGCGGTTGCCTCG
1 A-TCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
*
12519582 AGCACCATCGGCACA
1 ATCACCATCGGCACA
12519597 TACTAGGCCT
Statistics
Matches: 174, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
43 38 0.22
44 3 0.02
45 133 0.76
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (45 bp):
ATCACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCG
Found at i:12519611 original size:45 final size:45
Alignment explanation
Indices: 12519361--12519636 Score: 313
Period size: 45 Copynumber: 6.2 Consensus size: 45
12519351 GCTGGTCTAT
* * * *
12519361 CACCATCGGGACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
* * * * * *
12519406 CACCATCGGGACACGCTGAGCCCTGGTGTGGGCGATTGCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
* *
12519451 CACCATCAGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
* * *
12519496 TACCATC-G-ACACGTTGGGCCCTGGTACGAGCGGTTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
* *
12519539 TACCATCGGCACACGTTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
** * * * * * *
12519584 CACCATCGGCACATACTAGGCCTTGGTGTGGGCGGTTGCTTCGGG
1 CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
12519629 CACCATCG
1 CACCATCG
12519637 ACATAAGCCG
Statistics
Matches: 204, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
43 39 0.19
44 2 0.01
45 163 0.80
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (45 bp):
CACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGAG
Done.