Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 60 of 138
Found at i:12519611 original size:133 final size:133
Alignment explanation
Indices: 12519370--12519622 Score: 328
Period size: 133 Copynumber: 1.9 Consensus size: 133
12519360 TCACCATCGG
* * * * *
12519370 GACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCATCGGGACACGCTGAGCCCTGGTGT
1 GACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCACACGCTGAGCCCTGGTGC
* * * *
12519435 GGGCGATTGCCTCGATCACCATCAGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCGATTACC
66 GAGCGATTGCCTCGAGCACCATCAGCACACACTAGGCCCTGGTGCGAGCGGTTGCCTCGATTACC
12519500 ATC
131 ATC
* * *
12519503 GACACGTTGGGCCCTGGTACGAGCGGTTGCCTCGAGT-ACCATCGGCACACGTTGGGCCCTGGTG
1 GACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGA-TCACCATCGGCACACGCTGAGCCCTGGTG
* * * * * *
12519567 CGAGCGGTTGCCTCGAGCACCATCGGCACATACTAGGCCTTGGTGTGGGCGGTTGC
65 CGAGCGATTGCCTCGAGCACCATCAGCACACACTAGGCCCTGGTGCGAGCGGTTGC
12519623 TTCGGGCACC
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
133 100 0.99
134 1 0.01
ACGTcount: A:0.14, C:0.31, G:0.34, T:0.21
Consensus pattern (133 bp):
GACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGATCACCATCGGCACACGCTGAGCCCTGGTGC
GAGCGATTGCCTCGAGCACCATCAGCACACACTAGGCCCTGGTGCGAGCGGTTGCCTCGATTACC
ATC
Found at i:12531768 original size:45 final size:45
Alignment explanation
Indices: 12531704--12531911 Score: 152
Period size: 45 Copynumber: 4.6 Consensus size: 45
12531694 CATGTGCGGG
* *
12531704 CACCATCGACATACGCTGGGCCCTGGTGCGGGCGGTTGCCTTGAA
1 CACCATCGACAAACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA
* * ** * ** *
12531749 CACCATCGGCAAATGCTGGGCTTTGGTGTGAACGGTTGCCTCGAT
1 CACCATCGACAAACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA
* * * *** *
12531794 CACCATC-A-AACACGTTGGGCCTTGGTGTGGGTAATTGCCTCGAG
1 CACCATCGACAA-ACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA
* * * * * *
12531838 CACCATTGGCAGAA-GATGGCCCCTGGTGCGGGCGGTTACGTCCGAA
1 CACCATCGACA-AACGCTGGGCCCTGGTGCGGGCGGTTGCCT-CGAA
*
12531884 CACCATCGACACACGCTGGGCCCTGGTG
1 CACCATCGACAAACGCTGGGCCCTGGTG
12531912 TGGGGTGGTT
Statistics
Matches: 120, Mismatches: 37, Indels: 11
0.71 0.22 0.07
Matches are distributed among these distances:
43 2 0.02
44 30 0.25
45 61 0.51
46 26 0.22
47 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (45 bp):
CACCATCGACAAACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA
Found at i:12532124 original size:45 final size:45
Alignment explanation
Indices: 12532052--12532255 Score: 223
Period size: 45 Copynumber: 4.6 Consensus size: 45
12532042 CACACGTTGG
* * *
12532052 TCGATCACCATCGGCACATGCTTGGCCCTGGTGCGGGCGGTTACC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
* * * ** *
12532097 TCGAGCACCATTGGCACACGCTAGGCCCTGTTGCAAGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
*
12532142 TCGAGCACCAT-TGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
* * * * * *
12532186 TCGA-CACCATCGGCACACACCGGGCCCTAGTGTGGGGGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
* * *
12532230 TCGATCACCATCGACACACGTTGGGC
1 TCGAGCACCATCGGCACACGCTGGGC
12532256 GTCCACCCAG
Statistics
Matches: 132, Mismatches: 25, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
43 6 0.05
44 61 0.46
45 65 0.49
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.19
Consensus pattern (45 bp):
TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
Found at i:12532181 original size:44 final size:44
Alignment explanation
Indices: 12532065--12532255 Score: 195
Period size: 44 Copynumber: 4.3 Consensus size: 44
12532055 ATCACCATCG
* *
12532065 GCACATGCTTGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATT
1 GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATT
* * ** *
12532109 GGCACACGCTAGGCCCTGTTGCAAGCGGTTGCCTCGAGCACCATT
1 -GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATT
*
12532154 GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGA-CACCATCG
1 GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCAT-T
* * * * * * * *
12532198 GCACACACCGGGCCCTAGTGTGGGGGGTTGCCTCGATCACCATC
1 GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATT
*
12532242 GACACACGTTGGGC
1 G-CACACGCTGGGC
12532256 GTCCACCCAG
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
43 6 0.05
44 62 0.51
45 53 0.44
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.19
Consensus pattern (44 bp):
GCACACGCTGGGCCCTGGTGCGGGCGGTTACCTCGAGCACCATT
Found at i:12536457 original size:26 final size:26
Alignment explanation
Indices: 12536421--12536473 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12536411 TTGATCCAAT
12536421 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12536447 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12536473 C
1 C
12536474 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12537548 original size:45 final size:44
Alignment explanation
Indices: 12537406--12537791 Score: 186
Period size: 45 Copynumber: 8.6 Consensus size: 44
12537396 CGGGCACTTA
* * * * * *
12537406 CCTCGACCGCCATCAGCACAAGCTGGGCCCTGGTGTGGGTGGTTG
1 CCTCGACCACCATCGGTACATGCT-GGCCCTGGTGCGGATGGTTG
* * ** * * * **
12537451 CCTCGATCACCATTGGCCCATCCTGAGCCTTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGGTACATGCTG-GCCCTGGTGCGGATGGTTG
* *
12537496 TCC-CGACCACCATCGATACATGCTGGCCCTTGGTGCGGATGGTTA
1 -CCTCGACCACCATCGGTACATGCTGGCCC-TGGTGCGGATGGTTG
* * * * * *
12537541 CCTCGACCACCAGCGGCACATGCTGGGTCGTGGTGCGGGCT-ATTG
1 CCTCGACCACCATCGGTACATGCT-GGCCCTGGTGC-GGATGGTTG
* * * *
12537586 CATCGAGCACCATCGGTAAATGCTGGGCCCTAGTGC-GAGTGGTTG
1 CCTCGACCACCATCGGTACATGCT-GGCCCTGGTGCGGA-TGGTTG
* ** * * * *
12537631 CCTAGACCACCATCGAAAGAAGATGGCCCCTGGTGCAGG-CGGTTG
1 CCTCGACCACCATCGGTACATGCTGG-CCCTGGTGC-GGATGGTTG
* * * ** ** *
12537676 CATCGAACACCATCGGGACATGCTGGGCCCTAATGCGGGCGGTTA
1 CCTCGACCACCATCGGTACATGCT-GGCCCTGGTGCGGATGGTTG
* * * * * *
12537721 CCTCGAACACCATTGGCACGTGCTGGGCCTTGGTGCGGAAGGTTG
1 CCTCGACCACCATCGGTACATGCT-GGCCCTGGTGCGGATGGTTG
* *
12537766 CCTCGAGCACCATCGATACATGCTGG
1 CCTCGACCACCATCGGTACATGCTGG
12537792 TCGATCACCA
Statistics
Matches: 254, Mismatches: 74, Indels: 27
0.72 0.21 0.08
Matches are distributed among these distances:
43 1 0.00
44 13 0.05
45 229 0.90
46 10 0.04
47 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.21
Consensus pattern (44 bp):
CCTCGACCACCATCGGTACATGCTGGCCCTGGTGCGGATGGTTG
Found at i:12537597 original size:90 final size:90
Alignment explanation
Indices: 12537427--12537791 Score: 295
Period size: 90 Copynumber: 4.1 Consensus size: 90
12537417 ATCAGCACAA
* * * * * * * * * * *
12537427 GCTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACCATTGGCCCATCCTGAGCCTTGGTGTGGGCG
1 GCTGGGCCCTAGTGCGGATGGTTACCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCGGGCG
* *
12537492 GTTGTC-CCGACCACCATCGATACAT
66 GTTG-CATCGAGCACCATCGATACAT
* * * *
12537517 GCT-GGCCCTTGGTGCGGATGGTTACCTCGACCACCAGCGGCACATGCTGGGTCGTGGTGCGGGC
1 GCTGGGCCC-TAGTGCGGATGGTTACCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCGGGC
** * *
12537581 TATTGCATCGAGCACCATCGGTAAAT
65 GGTTGCATCGAGCACCATCGATACAT
* * ** * * * * *
12537607 GCTGGGCCCTAGTGC-GAGTGGTTGCCTAGACCACCATCGAAAGAAGATGGCCCCTGGTGCAGGC
1 GCTGGGCCCTAGTGCGGA-TGGTTACCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCGGGC
* **
12537671 GGTTGCATCGAACACCATCGGGACAT
65 GGTTGCATCGAGCACCATCGATACAT
* ** * * * * **
12537697 GCTGGGCCCTAATGCGGGCGGTTACCTCGAACACCATTGGCACGTGCTGGGCCTTGGTGCGGAAG
1 GCTGGGCCCTAGTGCGGATGGTTACCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCGGGCG
*
12537762 GTTGCCTCGAGCACCATCGATACAT
66 GTTGCATCGAGCACCATCGATACAT
12537787 GCTGG
1 GCTGG
12537792 TCGATCACCA
Statistics
Matches: 212, Mismatches: 58, Indels: 10
0.76 0.21 0.04
Matches are distributed among these distances:
89 8 0.04
90 198 0.93
91 6 0.03
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (90 bp):
GCTGGGCCCTAGTGCGGATGGTTACCTCGACCACCATCGGCACATGCTGGGCCCTGGTGCGGGCG
GTTGCATCGAGCACCATCGATACAT
Found at i:12537956 original size:45 final size:45
Alignment explanation
Indices: 12537792--12538730 Score: 510
Period size: 45 Copynumber: 20.3 Consensus size: 45
12537782 TACATGCTGG
** * *
12537792 TCGATCACCATCGGCACACATTGGGCCTTGGTGCGGGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * *
12537837 TCGATCACCATCAG-ATCAC-ATCGGGCCCTAGTGCGGGCGGTTACC
1 TCGATCACCATCGGCA-CACGCT-GGGCCCTGGTGCGGGCGGTTGCC
* * * * * * * * *
12537882 TCAAGCATCATCGACAGAAGATGGCCCCTGGTGCGGGCGGTTGCG
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * ** *
12537927 TCGAACACCATCGGCATACGCTGGGCCCTGGTATGAGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * **
12537972 TTGATCACCATTGGCACACACTAGGCCCTGGTGCAAGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* ** ** **
12538017 TCGAACACCATCGGCACGTGCTGGGCTTTGGTGCGGGCTCTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * * * * *
12538062 TCGACCACTATCAGTAGAAGAT-GGCCCTAGGTGTGGACAGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCT-GGTGCGGGCGGTTGCC
* * ** ** *
12538107 TCGATCACCATCGACACATGCT-GGCAATCAC-CAT-C-GGCACATACTG-G
1 TCGATCACCATCGGCACACGCTGGGC---C-CTGGTGCGGGC-GGT--TGCC
* * *
12538154 TTGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * **
12538199 TCGAGCACCATTGGCACACGCTAGGCCCTGGTACGGATGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * *
12538244 TCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGTGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * *
12538289 TCAAACACCATCGGCACTCACTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * *
12538334 TCGATCACCATCGGTACACACTGAGCCCTGGTGCGGGCAGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * *
12538379 TTGATCACCATCGACACATGCTGGTCGATCACCATCGGCATATGCTGGGCCCTGGTGCAGGCGGT
1 TCGATCACCATCGGCACACGCTGG--G--C-CC-T-GG----TGC-GGGC------------GGT
12538444 TGCC
42 TGCC
* *
12538448 TCGATCACCATCGACACACGCTGGGCCCTGGTGCCGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* ** * * ** * *
12538493 TCGAGCACCATCAACACACACTAGGCTTTAGTGCGGGGGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* **
12538538 TCGATCACCATCGGCACACACTGGGCCCTGGTGCGGATGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * *
12538583 TTGAGCACCATTGGCACACACTGGGCCCTGGTGCGGGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * *
12538628 TCAAGCACCATCGGCACATGCTAGGCCTTGGTGCGGGTGGTTGCT
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
* * * **
12538673 TCGAGCACCATCGGCACAAGC-CGGCCCTTGGTGCGGGCTCTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCC-TGGTGCGGGCGGTTGCC
**
12538718 TCGGCCACCATCG
1 TCGATCACCATCG
12538731 ACAGAAGATG
Statistics
Matches: 682, Mismatches: 170, Indels: 84
0.73 0.18 0.09
Matches are distributed among these distances:
44 13 0.02
45 581 0.85
46 5 0.01
47 23 0.03
48 6 0.01
49 2 0.00
50 2 0.00
51 1 0.00
52 2 0.00
56 3 0.00
57 7 0.01
58 3 0.00
62 2 0.00
63 1 0.00
64 2 0.00
65 1 0.00
67 1 0.00
69 27 0.04
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCC
Found at i:12538165 original size:24 final size:23
Alignment explanation
Indices: 12538108--12538171 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
12538098 ACAGTTGCCT
* *
12538108 CGATCACCATCGACACATGCTGG
1 CGATCACCATCGGCACATACTGG
*
12538131 CAATCACCATCGGCACATACTGG
1 CGATCACCATCGGCACATACTGG
*
12538154 TTGATCACCATCGGCACA
1 -CGATCACCATCGGCACA
12538172 CGTTGGGCCC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 20 0.57
24 15 0.43
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (23 bp):
CGATCACCATCGGCACATACTGG
Found at i:12538334 original size:227 final size:227
Alignment explanation
Indices: 12537932--12538346 Score: 514
Period size: 227 Copynumber: 1.8 Consensus size: 227
12537922 TTGCGTCGAA
* * *
12537932 CACCATCGGCATACGCTGGGCCCTGGTATGAGCGGTTGCCTTGATCACCATTGGCACACACTAGG
1 CACCATCGGCACACGCTGGGCCCTGGTATGAGCGGTTGCCTCGAGCACCATTGGCACACACTAGG
* ** ** * *
12537997 CCCTGGTGCAAGCGGTTGCCTCGAACACCATCGGCACGTGCTGGGCTTTGGTGCGGGCTCTTGCC
66 CCCTGGTACAAGCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGCTCTTACC
* * * * *
12538062 TCGACCACTATCAGTAGAAGATGGCCCTAGGTGTGGACAGTTGCCTCGATCACCATCGACACATG
131 TCAAACACCATCAGCAGAAGATGGCCCTAGGTGCGGACAGTTGCCTCGATCACCATCGACACATG
12538127 CTGGCAATCACCATCGGCACATACTGGTTGAT
196 CTGGCAATCACCATCGGCACATACTGGTTGAT
* * * *
12538159 CACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCACACGCTAGG
1 CACCATCGGCACACGCTGGGCCCTGGTATGAGCGGTTGCCTCGAGCACCATTGGCACACACTAGG
* * *
12538224 CCCTGGTAC-GGATGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAG-TGGTTA
66 CCCTGGTACAAG-CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGCT-CTTA
* ** * * *
12538287 CCTCAAACACCATCGGCACTCA-CTGGGCCCT-GGTGCGGGCGGTTGCCTCGATCACCATCG
129 CCTCAAACACCATCAGCA-GAAGAT-GGCCCTAGGTGCGGACAGTTGCCTCGATCACCATCG
12538347 GTACACACTG
Statistics
Matches: 156, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
226 2 0.01
227 147 0.94
228 7 0.04
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (227 bp):
CACCATCGGCACACGCTGGGCCCTGGTATGAGCGGTTGCCTCGAGCACCATTGGCACACACTAGG
CCCTGGTACAAGCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGCTCTTACC
TCAAACACCATCAGCAGAAGATGGCCCTAGGTGCGGACAGTTGCCTCGATCACCATCGACACATG
CTGGCAATCACCATCGGCACATACTGGTTGAT
Found at i:12538393 original size:272 final size:273
Alignment explanation
Indices: 12537907--12538418 Score: 665
Period size: 272 Copynumber: 1.9 Consensus size: 273
12537897 AGAAGATGGC
* * * *
12537907 CCCTGGTGCGGGCGGTTGCGTCGAACACCATCGGCATACGCTGGGCCCTGGTATGAGCGGTTGCC
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTAGGAGCGGTTGCC
* * * * * *
12537972 TTGATCACCATTGGCACACACTAGGCCCTGGTGCAAGCGGTTGCCTCGAACACCATCGGCACGTG
66 TCGAACACCATCGGCACACACTAGGCCCTGGTGCAAGCGGTTACCTCAAACACCATCGGCACGTA
** * * * *
12538037 CTGGGCTTTGGTGCGGGCTCTTGCCTCGACCACTATCAGTAGAAGATGGCCCTAGGTGTGGACAG
131 CTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCAGTACAAGATGGCCCTAGGTGCGGACAG
*
12538102 TTGCCTCGATCACCATCGACACATGCTGG-CAATCACCATCGGCACATACTGGTTGATCACCATC
196 TTACCTCGATCACCATCGACACATGCTGGTCAATCACCATCGGCACATACTGGTTGATCACCATC
12538166 GGCACACGTTGGG
261 GGCACACGTTGGG
* * * *
12538179 CCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCACACGCTAGGCCCTGGTACGGA-TGGTTGC
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTA-GGAGCGGTTGC
* * * *
12538243 CTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGTGGTTACCTCAAACACCATCGGCAC-T
65 CTCGAACACCATCGGCACACACTAGGCCCTGGTGCAAGCGGTTACCTCAAACACCATCGGCACGT
* * * *
12538307 CACTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGTACACA-CTGAGCCCT-GGTGCGG
130 -ACTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCAGTACA-AGATG-GCCCTAGGTGCGG
* * *
12538370 GCAGTTACCTTGATCACCATCGACACATGCTGGTCGATCACCATCGGCA
192 ACAGTTACCTCGATCACCATCGACACATGCTGGTCAATCACCATCGGCA
12538419 TATGCTGGGC
Statistics
Matches: 203, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
271 1 0.00
272 180 0.89
273 22 0.11
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.21
Consensus pattern (273 bp):
CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTAGGCCCTGGTAGGAGCGGTTGCC
TCGAACACCATCGGCACACACTAGGCCCTGGTGCAAGCGGTTACCTCAAACACCATCGGCACGTA
CTGGGCCCTGGTGCGGGCGCTTGCCTCGACCACCATCAGTACAAGATGGCCCTAGGTGCGGACAG
TTACCTCGATCACCATCGACACATGCTGGTCAATCACCATCGGCACATACTGGTTGATCACCATC
GGCACACGTTGGG
Found at i:12538413 original size:24 final size:24
Alignment explanation
Indices: 12538381--12538426 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
12538371 CAGTTACCTT
12538381 GATCACCATCGACACATGCTGGTC
1 GATCACCATCGACACATGCTGGTC
* *
12538405 GATCACCATCGGCATATGCTGG
1 GATCACCATCGACACATGCTGG
12538427 GCCCTGGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (24 bp):
GATCACCATCGACACATGCTGGTC
Found at i:12538454 original size:69 final size:69
Alignment explanation
Indices: 12538334--12538471 Score: 186
Period size: 69 Copynumber: 2.0 Consensus size: 69
12538324 GGCGGTTGCC
* * * *
12538334 TCGATCACCATCGGTACACACTGAGCCCTGGTGCGGGCAGTTACCTTGATCACCATCGACACATG
1 TCGATCACCATCGGCACACACTGAGCCCTGGTGCAGGCAGTTACCTCGATCACCATCGACACACG
12538399 CTGG
66 CTGG
* ** * * *
12538403 TCGATCACCATCGGCATATGCTGGGCCCTGGTGCAGGCGGTTGCCTCGATCACCATCGACACACG
1 TCGATCACCATCGGCACACACTGAGCCCTGGTGCAGGCAGTTACCTCGATCACCATCGACACACG
12538468 CTGG
66 CTGG
12538472 GCCCTGGTGC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.21
Consensus pattern (69 bp):
TCGATCACCATCGGCACACACTGAGCCCTGGTGCAGGCAGTTACCTCGATCACCATCGACACACG
CTGG
Found at i:12538544 original size:159 final size:159
Alignment explanation
Indices: 12538244--12538555 Score: 385
Period size: 159 Copynumber: 2.0 Consensus size: 159
12538234 GATGGTTGCC
* * *
12538244 TCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGTGGTTACCTCAAACACCATCGGCACTCA
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTACCTCAAACACCATCGACACACA
* * *** *
12538309 CTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGTACACACTGAGCCCTGGTGCGGGCAG
66 CTGGGCCCTGGTGCCGGCGGTTGCCTCGAGCACCATCAACACACACTGAGCCCTAGTGCGGGCAG
*
12538374 TTACCTTGATCACCATCGACACATGCTGG
131 TTACCTCGATCACCATCGACACATGCTGG
* * * * * *
12538403 TCGATCACCATCGGCATATGCTGGGCCCTGGTGC-AGGCGGTTGCCTCGATCACCATCGACACAC
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTGCGA-GCGGTTACCTCAAACACCATCGACACAC
* ** *
12538467 GCTGGGCCCTGGTGCCGGCGGTTGCCTCGAGCACCATCAACACACACT-AGGCTTTAGTGCGGGG
65 ACTGGGCCCTGGTGCCGGCGGTTGCCTCGAGCACCATCAACACACACTGA-GCCCTAGTGCGGGC
* * *
12538531 GGTTGCCTCGATCACCATCGGCACA
129 AGTTACCTCGATCACCATCGACACA
12538556 CACTGGGCCC
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
158 2 0.02
159 126 0.98
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (159 bp):
TCGAACACCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTACCTCAAACACCATCGACACACA
CTGGGCCCTGGTGCCGGCGGTTGCCTCGAGCACCATCAACACACACTGAGCCCTAGTGCGGGCAG
TTACCTCGATCACCATCGACACATGCTGG
Found at i:12538639 original size:249 final size:249
Alignment explanation
Indices: 12538135--12538649 Score: 645
Period size: 249 Copynumber: 2.1 Consensus size: 249
12538125 TGCTGGCAAT
* * * **
12538135 CACCATCGGCACATACTGGTTGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCCT
1 CACCATCGGCACATGCTGGTCGATCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCT
* * * ** *
12538200 CGAGCACCATTGGCACACGCTAGGCCCTGGTACGGATGGTTGCCTCGAACACCATCGGCACACGC
66 CGAGCACCATCGACACACGCTAGGCCCTGGTACGGACGGTTGCCTCGAACACCATCAACACACAC
* * * * *
12538265 TGGGCCCTGGTGCGAGTGGTTACCTCAAACACCATCGGCACTCACTGGGCCCTGGTGCGGGCGGT
131 TAGGCCCTAGTGCGAGGGGTTACCTCAAACACCATCGGCACACACTGGGCCCTGGTGCGGACGGT
* * ** *
12538330 TGCCTCGATCACCATCGGTACACACTGAGCCCTGGTGCGGGCAGTTACCTTGAT
196 TGCCTCGAGCACCATCGGCACACACTGAGCCCTGGTGCGGGCAGTTACCTCAAG
* * *
12538384 CACCATCGACACATGCTGGTCGATCACCATCGGCATATGCTGGGCCCTGGTGCAGGCGGTTGCCT
1 CACCATCGGCACATGCTGGTCGATCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCT
* * * *
12538449 CGATCACCATCGACACACGCTGGGCCCTGGTGCCGG-CGGTTGCCTCGAGCACCATCAACACACA
66 CGAGCACCATCGACACACGCTAGGCCCTGGT-ACGGACGGTTGCCTCGAACACCATCAACACACA
** * * * * *
12538513 CTAGGCTTTAGTGCGGGGGGTTGCCTCGATCACCATCGGCACACACTGGGCCCTGGTGCGGATGG
130 CTAGGCCCTAGTGCGAGGGGTTACCTCAAACACCATCGGCACACACTGGGCCCTGGTGCGGACGG
* * * ** *
12538578 TTGCCTTGAGCACCATTGGCACACACTGGGCCCTGGTGCGGGTGGTTGCCTCAAG
195 TTGCCTCGAGCACCATCGGCACACACTGAGCCCTGGTGCGGGCAGTTACCTCAAG
12538633 CACCATCGGCACATGCT
1 CACCATCGGCACATGCT
12538650 AGGCCTTGGT
Statistics
Matches: 223, Mismatches: 42, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
249 220 0.99
250 3 0.01
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.20
Consensus pattern (249 bp):
CACCATCGGCACATGCTGGTCGATCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCT
CGAGCACCATCGACACACGCTAGGCCCTGGTACGGACGGTTGCCTCGAACACCATCAACACACAC
TAGGCCCTAGTGCGAGGGGTTACCTCAAACACCATCGGCACACACTGGGCCCTGGTGCGGACGGT
TGCCTCGAGCACCATCGGCACACACTGAGCCCTGGTGCGGGCAGTTACCTCAAG
Found at i:12542753 original size:26 final size:26
Alignment explanation
Indices: 12542724--12542776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12542714 CCGGTCTGAT
*
12542724 CTTATACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
12542750 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
12542776 C
1 C
12542777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:12542892 original size:196 final size:197
Alignment explanation
Indices: 12542553--12542947 Score: 454
Period size: 196 Copynumber: 2.0 Consensus size: 197
12542543 TCCGACAGGG
* * * *
12542553 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*** * * * * *
12542618 CTGGCTAGAGAGGTAGGATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCAACCAGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
* * * * *
12542683 CGTTACCGGTCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTATACTGGGAAA-GAACTCCGT
131 CGTCACAGGTCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAAATGAACTCCGT
12542747 AT
196 AT
* * *
12542749 GCTTAGAC-TGGGAACGAACTCCGTATGCCTAAGTCAACCCATG-AACGATCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *** * * *
12542812 ACCAACCAGAGAGGCAGAATGCGAAAGCCGGGGATTGGTTCGGTCTCCCTCTACGTGCTGTCGAT
65 ACCAACCAGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGATC-CCCCCTACGTGCTATCGAT
* * * * * *
12542877 CTCGTCGCAGGTCCTGCTATTGTAACCCTTGGTCTGGTCTGATCTTAGACTAGGAAATGAACTCC
129 CCCGTCACAGGTCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAAATGAACTCC
12542942 GTAT
194 GTAT
12542946 GC
1 GC
12542948 CTAAGTCAAC
Statistics
Matches: 163, Mismatches: 33, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
195 49 0.30
196 101 0.62
197 13 0.08
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (197 bp):
GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCAACCAGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
CGTCACAGGTCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAAATGAACTCCGT
AT
Found at i:12543546 original size:11 final size:11
Alignment explanation
Indices: 12543526--12543560 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
12543516 CGGTCAGGTT
*
12543526 CTCCGGCGATG
1 CTCCGACGATG
12543537 CTCCGACGATG
1 CTCCGACGATG
*
12543548 CTCCGATGATG
1 CTCCGACGATG
12543559 CT
1 CT
12543561 ACCTCGGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:12543855 original size:45 final size:45
Alignment explanation
Indices: 12543731--12544160 Score: 215
Period size: 45 Copynumber: 9.5 Consensus size: 45
12543721 GTATGGGCAC
* * * * * * *
12543731 TTACCTCGATCGCCATGGGCACAAGCTGGGCCCTGGTGTGGGCAG
1 TTACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * ** * *
12543776 TTGCCTCTAGTACCATCGGCACACA-CTGGGCCCTGGTGCGGGCGG
1 TTACCTCGAACACCATCGGCACA-AGATGGCCCCTGGTGCGGGCGG
* * * *
12543821 TTACCTCGACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGCGA
1 TTACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
** * * * * *
12543866 TTGTGC-CGAACACCATCGACACACGTTGGGCCCTGGTGCGGGTGG
1 TT-ACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* ** * * * ** *
12543911 TTACCTCGAACACTATTAGTACACGCTGGGTCCTGGTACGGGCGG
1 TTACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * * *** * **
12543956 TTGCCTCGAGCACCATTGGCACAAGCCAGCCCTTGGTGCGGGCTA
1 TTACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * * *
12544001 TTACCTCGAGCGCCATCGATAGCAGAAGATGGCCCC-GGTACGGGCGG
1 TTACCTCGAACACCATCG---GCACAAGATGGCCCCTGGTGCGGGCGG
* * * * * *
12544048 TTGCGTCGAACACCATCGACACATGCTAGGCCCC-GGTGCGGGCAG
1 TTACCTCGAACACCATCGGCACAAGAT-GGCCCCTGGTGCGGGCGG
* * * * * *
12544093 TTGCCTC-AATCACCATCGGCACACA-CTAGTCCATGGTGAGGGCGG
1 TTACCTCGAA-CACCATCGGCACA-AGATGGCCCCTGGTGCGGGCGG
*
12544138 TTGCCTCGAACACCATCGGCACA
1 TTACCTCGAACACCATCGGCACA
12544161 TGCTGGTCGA
Statistics
Matches: 291, Mismatches: 82, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
44 12 0.04
45 243 0.84
46 4 0.01
47 22 0.08
48 10 0.03
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
TTACCTCGAACACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
Found at i:12544170 original size:24 final size:24
Alignment explanation
Indices: 12544143--12544188 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
12544133 GGCGGTTGCC
12544143 TCGAACACCATCGGCACATGCTGG
1 TCGAACACCATCGGCACATGCTGG
* *
12544167 TCGATCGCCATCGGCACATGCT
1 TCGAACACCATCGGCACATGCT
12544189 AGGCCCTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.20
Consensus pattern (24 bp):
TCGAACACCATCGGCACATGCTGG
Found at i:12544239 original size:45 final size:45
Alignment explanation
Indices: 12544174--12544370 Score: 198
Period size: 45 Copynumber: 4.4 Consensus size: 45
12544164 TGGTCGATCG
* * *
12544174 CCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCA
1 CCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCAATCA
* ** * * * *
12544219 CCATCGGTACACGCTGGGCCCCAGTGCGGGGGGTTGCCTCGAGCA
1 CCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCAATCA
* * * * * *
12544264 CCATCGGCACATGCTGAGCCCTGGTGCGGGTGGTTTCCTCCATCA
1 CCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCAATCA
* * *
12544309 CCATCGACACACGTTGGGCCCTGGTGCGAGCGGTTGCGTCGAA-CA
1 CCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTC-AATCA
*
12544354 CCATCGGCACACACTGG
1 CCATCGGCACACGCTGG
12544371 TCGATCACCA
Statistics
Matches: 120, Mismatches: 31, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
45 119 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.19
Consensus pattern (45 bp):
CCATCGGCACACGCTGGGCCCTGGTGCGAGCGGTTGCCTCAATCA
Found at i:12544254 original size:114 final size:114
Alignment explanation
Indices: 12544060--12544279 Score: 305
Period size: 114 Copynumber: 1.9 Consensus size: 114
12544050 GCGTCGAACA
* * *
12544060 CCATCGACACATGCTAGGCCCCGGTGCGGGCAGTTGCCTCAATCACCATCGGCACACACTAGTCC
1 CCATCGACACATGCTAGGCCCCGGTACGAGCAGTTGCCTCAATCACCATCGGCACACACTAGGCC
**
12544125 ATGGTGAGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGTCGATCG
66 ACAGTGAGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGTCGATCG
* * * * * *
12544174 CCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCACCATCGGTACACGCTGGGCC
1 CCATCGACACATGCTAGGCCCCGGTACGAGCAGTTGCCTCAATCACCATCGGCACACACTAGGCC
* * * *
12544239 CCAGTGCGGGGGGTTGCCTCGAGCACCATCGGCACATGCTG
66 ACAGTGAGGGCGGTTGCCTCGAACACCATCGGCACATGCTG
12544280 AGCCCTGGTG
Statistics
Matches: 91, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
114 91 1.00
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.18
Consensus pattern (114 bp):
CCATCGACACATGCTAGGCCCCGGTACGAGCAGTTGCCTCAATCACCATCGGCACACACTAGGCC
ACAGTGAGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGTCGATCG
Found at i:12544327 original size:90 final size:90
Alignment explanation
Indices: 12544174--12544364 Score: 240
Period size: 90 Copynumber: 2.1 Consensus size: 90
12544164 TGGTCGATCG
**
12544174 CCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCACCATCGGTACACGCTGGGCC
1 CCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCACCATCGACACACGCTGGGCC
* * *
12544239 CCAGTGCGGGGGGTTGCCTCGAGCA
66 CCAGTGCGAGCGGTTGCCTCGAACA
* * * * * *
12544264 CCATCGGCACATGCT-GAGCCCTGGTGCGGGTGGTTTCCTCCATCACCATCGACACACGTTGGGC
1 CCATCGGCACATGCTAG-GCCCTGGTACGAGCGGTTGCCTCAATCACCATCGACACACGCTGGGC
** *
12544328 CCTGGTGCGAGCGGTTGCGTCGAACA
65 CCCAGTGCGAGCGGTTGCCTCGAACA
12544354 CCATCGGCACA
1 CCATCGGCACA
12544365 CACTGGTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 1 0.01
90 85 0.99
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.19
Consensus pattern (90 bp):
CCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCACCATCGACACACGCTGGGCC
CCAGTGCGAGCGGTTGCCTCGAACA
Found at i:12544382 original size:159 final size:159
Alignment explanation
Indices: 12544215--12544621 Score: 503
Period size: 159 Copynumber: 2.6 Consensus size: 159
12544205 GGTTGCCTCA
* ** *
12544215 ATCACCATCGGTACACGCTGGGCCCCAGTGCGGGGGGTTGCCTCGAGCACCATCGGCACATGCTG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTG
* * * ** *
12544280 AGCCCT-GGTGCGGGTGGTTTCCTCCATCACCATCGACACACGTTGGGCCCTGGTGCGAGCGGTT
66 -GCCCTCAGTACGGGAGGTCACCTCCATCACCATCGACACACATTGGGCCCTGGTGCGAGCGGTT
* * *
12544344 GCGTCGAACACCATCGGCACACACTGGTCG
130 ACCTCGAACACCATCGGCACACACTGATCG
* * *
12544374 ATCACCATCGCCACACGTTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGGCACATGCTG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTG
* * * *
12544439 GGCCTCAGTACGGGAGGTCACCTCGATCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTA
66 GCCCTCAGTACGGGAGGTCACCTCCATCACCATCGACACACATTGGGCCCTGGTGCGAGCGGTTA
* *
12544504 CCTCGAACACCATTGGCACACGCTGATCG
131 CCTCGAACACCATCGGCACACACTGATCG
* * * ** * *
12544533 ATCACCGTCAGCACACGCTGGGCCCTGGTGCGGTCGGTCACCTCGATCACCATCGGCACATGTTG
1 ATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCT-
* *
12544598 GGCCCT-AGTACAGGCGGTCACCTC
65 GGCCCTCAGTACGGGAGGTCACCTC
12544622 AAGCCACATC
Statistics
Matches: 211, Mismatches: 35, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 4 0.02
159 202 0.96
160 5 0.02
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (159 bp):
ATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTG
GCCCTCAGTACGGGAGGTCACCTCCATCACCATCGACACACATTGGGCCCTGGTGCGAGCGGTTA
CCTCGAACACCATCGGCACACACTGATCG
Found at i:12544413 original size:204 final size:204
Alignment explanation
Indices: 12544031--12544527 Score: 559
Period size: 204 Copynumber: 2.4 Consensus size: 204
12544021 AGCAGAAGAT
* * * * * *
12544031 GGCCCCGGTACGGGCGGTTGCGTCGAACACCATCGACACATGCT-AGGCCCCGGTGCGGGCAGTT
1 GGCCCCAGTACGGGAGGTTGCCTCGAACACCATCGGCACATGCTGA-GCCCTGGTGCGGGCGGTT
* * * *
12544095 GCCTCAATCACCATCGGCACACACTAGTCCATGGTGAGGGCGGTTGCCTCGAACACCATCGGCAC
65 ACCTCAATCACCATCGGCACACGCTAGGCCATGGTGAGAGCGGTTGCCTCGAACACCATCGGCAC
** * * * *
12544160 ATGCTGGTCGATCGCCATCGGCACATGCTAGGCCCTGGTACGAGCGGTTGCCTCAATCACCATCG
130 ACACTGGTCGATCACCATCGCCACACGCTAGGCCCTGGTACGAGCGGTTGCCTCAAGCACCATCG
*
12544225 GTACACGCTG
195 GCACACGCTG
* * * * *
12544235 GGCCCCAGTGCGGGGGGTTGCCTCGAGCACCATCGGCACATGCTGAGCCCTGGTGCGGGTGGTTT
1 GGCCCCAGTACGGGAGGTTGCCTCGAACACCATCGGCACATGCTGAGCCCTGGTGCGGGCGGTTA
* * * * * * *
12544300 CCTCCATCACCATCGACACACGTTGGGCCCTGGTGCGAGCGGTTGCGTCGAACACCATCGGCACA
66 CCTCAATCACCATCGGCACACGCTAGGCCATGGTGAGAGCGGTTGCCTCGAACACCATCGGCACA
* * * *
12544365 CACTGGTCGATCACCATCGCCACACGTTGGGCCCTGGTGC-AGGCGGTTGCCTCGAGCACCATCG
131 CACTGGTCGATCACCATCGCCACACGCTAGGCCCTGGTACGA-GCGGTTGCCTCAAGCACCATCG
*
12544429 GCACATGCTG
195 GCACACGCTG
* ** * *** *
12544439 GGCCTCAGTACGGGAGGTCACCTCGATCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTA
1 GGCCCCAGTACGGGAGGTTGCCTCGAACACCATCGGCACATGCTGAGCCCTGGTGCGGGCGGTTA
*
12544504 CCTCGAA-CACCATTGGCACACGCT
66 CCTC-AATCACCATCGGCACACGCT
12544528 GATCGATCAC
Statistics
Matches: 242, Mismatches: 48, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
203 1 0.00
204 239 0.99
205 2 0.01
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (204 bp):
GGCCCCAGTACGGGAGGTTGCCTCGAACACCATCGGCACATGCTGAGCCCTGGTGCGGGCGGTTA
CCTCAATCACCATCGGCACACGCTAGGCCATGGTGAGAGCGGTTGCCTCGAACACCATCGGCACA
CACTGGTCGATCACCATCGCCACACGCTAGGCCCTGGTACGAGCGGTTGCCTCAAGCACCATCGG
CACACGCTG
Found at i:12544425 original size:69 final size:69
Alignment explanation
Indices: 12544305--12544433 Score: 215
Period size: 69 Copynumber: 1.9 Consensus size: 69
12544295 GGTTTCCTCC
*
12544305 ATCACCATCGACACACGTTGGGCCCTGGTGCGAGCGGTTGCGTCGAACACCATCGGCACACACTG
1 ATCACCATCGACACACGTTGGGCCCTGGTGCGAGCGGTTGCCTCGAACACCATCGGCACACACTG
12544370 GTCG
66 GTCG
* *
12544374 ATCACCATCGCCACACGTTGGGCCCTGGTGC-AGGCGGTTGCCTCGAGCACCATCGGCACA
1 ATCACCATCGACACACGTTGGGCCCTGGTGCGA-GCGGTTGCCTCGAACACCATCGGCACA
12544434 TGCTGGGCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 1 0.02
69 55 0.98
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.17
Consensus pattern (69 bp):
ATCACCATCGACACACGTTGGGCCCTGGTGCGAGCGGTTGCCTCGAACACCATCGGCACACACTG
GTCG
Found at i:12544441 original size:45 final size:45
Alignment explanation
Indices: 12544371--12544528 Score: 174
Period size: 45 Copynumber: 3.5 Consensus size: 45
12544361 CACACACTGG
* * * *
12544371 TCGATCACCATCGCCACACGTTGGGCCCTGGTGCAGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
* * * * * *
12544416 TCGAGCACCATCGGCACATGCTGGG-CCTCAGTACGGGAGGTCACC
1 TCGATCACCATCGGCACACGCTGGGCCCT-GGTGCGGGCGGTTACC
**
12544461 TCGATCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
* *
12544506 TCGAACACCATTGGCACACGCTG
1 TCGATCACCATCGGCACACGCTG
12544529 ATCGATCACC
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
44 3 0.03
45 83 0.93
46 3 0.03
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTACC
Found at i:12544538 original size:24 final size:24
Alignment explanation
Indices: 12544506--12544552 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
12544496 GGCGGTTACC
**
12544506 TCGAACACCATTGGCACACGCTGA
1 TCGAACACCATCAGCACACGCTGA
* *
12544530 TCGATCACCGTCAGCACACGCTG
1 TCGAACACCATCAGCACACGCTG
12544553 GGCCCTGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.36, G:0.21, T:0.17
Consensus pattern (24 bp):
TCGAACACCATCAGCACACGCTGA
Found at i:12544576 original size:69 final size:69
Alignment explanation
Indices: 12544461--12544592 Score: 192
Period size: 69 Copynumber: 1.9 Consensus size: 69
12544451 GGAGGTCACC
* * * *
12544461 TCGATCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATTGGCACACG
1 TCGATCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTCACCTCGAACACCATCGGCACACG
12544526 CTGA
66 CTGA
* * * *
12544530 TCGATCACCGTCAGCACACGCTGGGCCCTGGTGCGGTCGGTCACCTCGATCACCATCGGCACA
1 TCGATCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTCACCTCGAACACCATCGGCACA
12544593 TGTTGGGCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 55 1.00
ACGTcount: A:0.19, C:0.36, G:0.27, T:0.18
Consensus pattern (69 bp):
TCGATCACCATCAGCACACACTGGGCCCTGGTGCGGGCGGTCACCTCGAACACCATCGGCACACG
CTGA
Found at i:12544600 original size:45 final size:45
Alignment explanation
Indices: 12544530--12544652 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 45
12544520 CACACGCTGA
* * *
12544530 TCGATCACCGTCAGCACACGCTGGGCCCTGGTGC-GGTCGGTCACC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGCAGG-CGGTCACC
* * *
12544575 TCGATCACCATCGGCACATGTTGGGCCCTAGTACAGGCGGTCACC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTCACC
* *
12544620 TCAAGC-CACATCGGCACATGCTGGGCCCTGGTG
1 TCGATCAC-CATCGGCACATGCTGGGCCCTGGTG
12544653 TGGGCCCAGC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 1 0.02
45 62 0.95
46 2 0.03
ACGTcount: A:0.17, C:0.35, G:0.29, T:0.19
Consensus pattern (45 bp):
TCGATCACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTCACC
Found at i:12546450 original size:26 final size:26
Alignment explanation
Indices: 12546421--12546475 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
12546411 GTTGATCCTG
*
12546421 ATGCTTCGACTGGGAATGAACTCCGT
1 ATGCTTAGACTGGGAATGAACTCCGT
12546447 ATGCTTAGACTGGGAATGAACTCCGT
1 ATGCTTAGACTGGGAATGAACTCCGT
12546473 ATG
1 ATG
12546476 TAAGTCACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
ATGCTTAGACTGGGAATGAACTCCGT
Found at i:12548700 original size:26 final size:26
Alignment explanation
Indices: 12548671--12548723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12548661 CTGATCCGAT
12548671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12548697 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12548723 C
1 C
12548724 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12548886 original size:26 final size:26
Alignment explanation
Indices: 12548850--12548900 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12548840 CTGGTCCGAT
*
12548850 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12548876 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12548901 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12548975 original size:179 final size:184
Alignment explanation
Indices: 12548659--12549061 Score: 500
Period size: 179 Copynumber: 2.2 Consensus size: 184
12548649 ACAACTCTCG
* * * **
12548659 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTTCGTATGC
1 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAA
* ** * * * *
12548724 CTGAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCTAGAGGGGTAGGATACGCAAGCC
66 CTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATACACAAGCC
*
12548789 TGGGATCGATCGGGTC-CCC-C-TCTGCATGCTG-TCGATCCT-AC-T-ACCCTCA
131 TGGGATCGACCGGGTCTCCCTCATCTGC-TGCTGATC-ATCCTGACGTAACCCTCA
*
12548838 GTCTGGTCCGATCTTAGACTGGGAATGAACTGCGTATGCTTAGACTGGGAATGAACTCCGTATAA
1 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAA
* ** *
12548903 CTAAGTCAACCCACAAAACGAGCGTGCGGGCTCTCAGTCGGCCAGAGGGGCAGGATGCACAAG-C
66 CTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATACACAAGCC
* * *
12548967 TAGGGATCGACCGGGTCTCCCTCTATGTGCTGCTGATCATGCTGCCGTAACCCTCA
131 T-GGGATCGACCGGGTCTCCCTC-ATCTGCTGCTGATCATCCTGACGTAACCCTCA
*
12549023 GT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 GTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12549062 CTAGGCCAAC
Statistics
Matches: 191, Mismatches: 23, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
178 2 0.01
179 125 0.65
180 3 0.02
181 1 0.01
182 9 0.05
183 7 0.04
184 2 0.01
185 42 0.22
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (184 bp):
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAA
CTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATACACAAGCC
TGGGATCGACCGGGTCTCCCTCATCTGCTGCTGATCATCCTGACGTAACCCTCA
Found at i:12549791 original size:27 final size:26
Alignment explanation
Indices: 12549748--12549801 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
12549738 TCGGTCTGAT
*
12549748 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12549774 CTTAGACTAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
12549801 C
1 C
12549802 CTAAAACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12550231 original size:178 final size:179
Alignment explanation
Indices: 12549739--12550317 Score: 752
Period size: 179 Copynumber: 3.2 Consensus size: 179
12549729 ACCTTCAGTT
* * **
12549739 CGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCTTAGACTAGGGAATGAACTCCGTATGCCT
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATAACT
** * * * * * * *
12549804 AAAACAACTCATGAAATGAGCGTGAGGGCGCTCAGCCAGCTAGAAGGGCAGGATGCGCAAGCTGG
65 AAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGG
* *
12549869 GGATCGGTCGGGTCCCCCTCTGTATGCTG-CTGATCCTGCTACCCTCGAAC
130 GGATCGGTCGGGTCCCCCTCTGCATGCTGTC-GATCCTGCTACCCTCGATC
* * *
12549919 CGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATAACTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTA
* * * * *
12549984 AGTCAACCCAAGAAACGAGCGTACGGGTGCTCAACCGGCCAGAAGGGCAGGATGCACAAGCCTGG
66 AGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGG
*
12550049 GATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCCTCGATC
131 GATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCCTCGATC
*
12550098 CGGTCTGATCTTAGA-TAGGGAATGAACTCCGTATGC-TAGACTGGGAATGAACTCCGTATAACT
1 CGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACT
* * *
12550161 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCGG
65 AAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGG
* * *
12550226 GGATCGGTCGGGTCTCCCTCTGCATGCTGTCGATCCTACTACCACAACCCTC-AGTT
130 GGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCT------ACCCTCGA-TC
*
12550282 CGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
12550318 CTAAGCCAAC
Statistics
Matches: 348, Mismatches: 41, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
178 121 0.35
179 145 0.42
180 40 0.11
183 1 0.00
184 40 0.11
185 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (179 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATAACTA
AGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGG
GATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCCTCGATC
Found at i:12551013 original size:26 final size:26
Alignment explanation
Indices: 12550984--12551036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12550974 CCAGTCCGAT
*
12550984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12551010 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12551036 C
1 C
12551037 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12551201 original size:26 final size:26
Alignment explanation
Indices: 12551163--12551213 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12551153 CCGGTCTGAT
* *
12551163 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12551189 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
12551214 AACTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12551265 original size:179 final size:179
Alignment explanation
Indices: 12550965--12551325 Score: 512
Period size: 179 Copynumber: 2.0 Consensus size: 179
12550955 TGCTGCCGCA
12550965 ACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTC
1 ACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTC
** * **
12551030 CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAACCGGCCAGAGGGGC-AGAATG
66 CGTATAACTAAGTCAACCCACGAAACGAACGTACAAGCGCTCAACCGGCCAGAGGGGCAAG-ATG
* * *
12551094 CGTAAGCCGAGGATCGATCGGGTC-CCACTCTACGTGCTGTCGATCCTGCT
130 CGTAAACCGAGGATCGATCGGGTCTCC-CTCTACGTGCTGCCAATCCTGCT
* * *
12551144 ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-AGGAATGAACT
1 ACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGA-GAATGAACT
* * * *
12551208 CCGTATAACTAAGTTAACCCACGAAACGAGCGTACAAGCGCTCAGCTGGCCAGAGGGGCAAGATG
65 CCGTATAACTAAGTCAACCCACGAAACGAACGTACAAGCGCTCAACCGGCCAGAGGGGCAAGATG
* * *
12551273 CGTAAATCGAGGATCGATTGGGTCTCCCTCTGCGTGCTGCCAATCCTGCT
130 CGTAAACCGAGGATCGATCGGGTCTCCCTCTACGTGCTGCCAATCCTGCT
12551323 ACC
1 ACC
12551326 GTAACCCTCA
Statistics
Matches: 161, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
178 1 0.01
179 156 0.97
180 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (179 bp):
ACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAACGTACAAGCGCTCAACCGGCCAGAGGGGCAAGATGC
GTAAACCGAGGATCGATCGGGTCTCCCTCTACGTGCTGCCAATCCTGCT
Found at i:12552141 original size:26 final size:26
Alignment explanation
Indices: 12552065--12552135 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
12552055 TGGTCCAAAT
*
12552065 CTTAGACTGGGAATGAACTCGGTATC
1 CTTAGACTGGGAATGAACTCAGTATC
12552091 CTTAGACTGGGAATGAACTCAGTATC
1 CTTAGACTGGGAATGAACTCAGTATC
12552117 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
12552136 TCGTATGCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATC
Found at i:12552411 original size:179 final size:179
Alignment explanation
Indices: 12552091--12552420 Score: 484
Period size: 179 Copynumber: 1.8 Consensus size: 179
12552081 ACTCGGTATC
* ** *
12552091 CTTAGACTGGGAATGAACTCAGTATCCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAGCC
1 CTTAGACTGGGAATGAACTCAGTATCCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCC
* ** * * *
12552156 ATGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGTCG
66 ACGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGATCG
12552221 AGTCCCCCTCTGCATGCTGCCAATTCTGCTACCCTTGGTTCAGTCCGAT
131 AGTCCCCCTCTGCATGCTGCCAATTCTGCTACCCTTGGTTCAGTCCGAT
*
12552270 CTTAGACTGGGAATGAACTCTA-TATGCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACC
1 CTTAGACTGGGAATGAACTC-AGTATCCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACC
* *
12552334 CACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCAAGATGCGCAAGCC-AGGGATCGAT
65 CACGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCAAGATGCGCAAGCCGA-GGATCGAT
* * *
12552398 TGGGTCTCCCTCTGCATGCTGCC
129 CGAGTCCCCCTCTGCATGCTGCC
12552421 GATCCAGTTG
Statistics
Matches: 133, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
178 1 0.01
179 131 0.98
180 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (179 bp):
CTTAGACTGGGAATGAACTCAGTATCCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCC
ACGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGGGGCAAGATGCGCAAGCCGAGGATCGATCG
AGTCCCCCTCTGCATGCTGCCAATTCTGCTACCCTTGGTTCAGTCCGAT
Found at i:12553202 original size:26 final size:26
Alignment explanation
Indices: 12553166--12553218 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12553156 CTGGTCTGAT
* *
12553166 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12553192 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12553218 C
1 C
12553219 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12554270 original size:26 final size:26
Alignment explanation
Indices: 12554232--12554284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554222 TTGGTCTGAT
* *
12554232 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
12554258 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
12554284 C
1 C
12554285 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12554439 original size:26 final size:26
Alignment explanation
Indices: 12554410--12554460 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554400 CTGGTTCGAT
*
12554410 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12554436 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12554461 AACAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12554558 original size:178 final size:177
Alignment explanation
Indices: 12554229--12554563 Score: 415
Period size: 178 Copynumber: 1.9 Consensus size: 177
12554219 GGTTTGGTCT
** *
12554229 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATAACAAAGTCAA
** * *
12554294 CCCAAGAAACGATTGTGCGGGCGCTCAACCGGCTAGAGGGGCAGGTACGTAAGCCGAGAATCGGT
66 CCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGTACGTAAGCCGAGAATCGAT
* * * *
12554359 TGGGTCCCTTTTTACGTGCTACCGATCCTGCTACCCTCGATCTGGTTC
131 CGAGTCCCTCTGTA-GTGCTACCGATCCTGCTACCCTCGATCTGGTTC
* *
12554407 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATAACAAAGTCAA
1 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATAACAAAGTCAA
* * ** * * * *
12554472 CCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGA-GGGCAGG-ATGTGCAAGTCGGGGATCG
66 CCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGTACGT--AAGCCGAGAATCG
12554535 ATCGAGTCACCCTCTGT-GTGCTACCGATC
129 ATCGAGT--CCCTCTGTAGTGCTACCGATC
12554564 TTGTTACCGC
Statistics
Matches: 132, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
176 3 0.02
177 7 0.05
178 116 0.88
180 6 0.05
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (177 bp):
GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATAACAAAGTCAA
CCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGTACGTAAGCCGAGAATCGAT
CGAGTCCCTCTGTAGTGCTACCGATCCTGCTACCCTCGATCTGGTTC
Found at i:12555344 original size:26 final size:26
Alignment explanation
Indices: 12555304--12555356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12555294 CCTGTTCGAT
*
12555304 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
12555330 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
12555356 C
1 C
12555357 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:12555526 original size:26 final size:26
Alignment explanation
Indices: 12555483--12555533 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12555473 CTGGTCTAAT
*
12555483 CTTAGATTGCGAAAGAACTCCGTATG
1 CTTAGAATGCGAAAGAACTCCGTATG
* *
12555509 CTTAGAATGGGAATGAACTCCGTAT
1 CTTAGAATGCGAAAGAACTCCGTAT
12555534 AACTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGAATGCGAAAGAACTCCGTATG
Found at i:12555602 original size:179 final size:179
Alignment explanation
Indices: 12555302--12555694 Score: 547
Period size: 179 Copynumber: 2.2 Consensus size: 179
12555292 GTCCTGTTCG
* **
12555302 ATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTGGAAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATAACTAAGTCAAC
* *
12555367 CCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCAGGATGCGTAAGCCGGGGATCGAT
66 CCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGAC
12555432 CGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCCTCTGTCTGGTCTA
131 CGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCCTCTGTCTGGTCTA
* *
12555481 ATCTTAGATTGCGAAA-GAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATAACTAAGTCAA
1 ATCTTAGACTG-GAAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATAACTAAGTCAA
* * * *
12555545 CCCATGGAACGAGCGTTCGGGTGCTCAACCGGCCAGAA-GGGTAGGATGCGCAAGCCGGGGATCG
65 CCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCA-AAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * *
12555609 ACCGGGTCTCCCTCTGCGTGCTGTCGATCCTACTGTTGCACCCCTCGGTCTGGTCCA
129 ACCGGGTCCCCCTCTACGTGCTGTCGATCCTAC---T--A-CCCTCTGTCTGGTCTA
**
12555666 ATCTTAGACTGGTGATGAACTCCGTATGC
1 ATCTTAGACTGGAAATGAACTCCGTATGC
12555695 CTAATCCAAC
Statistics
Matches: 187, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
179 140 0.75
180 6 0.03
182 1 0.01
184 3 0.02
185 37 0.20
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (179 bp):
ATCTTAGACTGGAAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATAACTAAGTCAAC
CCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGAC
CGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCCTCTGTCTGGTCTA
Found at i:12562474 original size:26 final size:26
Alignment explanation
Indices: 12562445--12562495 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
12562435 CCGATCCGAT
12562445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12562471 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12562496 AACTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12563522 original size:26 final size:26
Alignment explanation
Indices: 12563484--12563534 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12563474 CTGATCCGAT
* *
12563484 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12563510 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12563535 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12565472 original size:26 final size:26
Alignment explanation
Indices: 12565436--12565488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12565426 CTAGTCCAAT
*
12565436 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12565462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12565488 C
1 C
12565489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12565644 original size:26 final size:26
Alignment explanation
Indices: 12565615--12565665 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12565605 CTGGTCTGAT
*
12565615 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
12565641 CTTAGACTTGGAATGAACTCCGTAT
1 CTTAGACTTGGAATGAACTCCGTAT
12565666 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:12565757 original size:179 final size:179
Alignment explanation
Indices: 12565417--12565826 Score: 491
Period size: 179 Copynumber: 2.3 Consensus size: 179
12565407 TGCTGGCACA
*
12565417 ACCCTCGGTCTAGTCCAATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** * *
12565482 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGGGACAGGATAC
66 CGTATAACTAAGTCAACCCACGAAACGAGCATGTAGGCGCTCAACCGGCCAGAGGGACAGGATAC
* * * *
12565547 GCAAGTTGGGGATCGATCGGGTCCCCCTCTGCATGCTGTTGATCCTGCT
131 GCAAGTCGGGAATCGATCGGGTCCACCTCTGCATGCTGTCGATCCTGCT
* ** * * *
12565596 ACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCTTAGACTTGGAATGAACTC
1 ACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * **
12565661 CGTATAACTAAGTCAACCTACGAAATGAGCATGTAGGCGCTCAGCCGGCCAGAGGGGCAGGATGT
66 CGTATAACTAAGTCAACCCACGAAACGAGCATGTAGGCGCTCAACCGGCCAGAGGGACAGGATAC
* * *
12565726 GCAAGTCGGGAATCGA-CTGGGTCTACCTCTGCGTGCTGTCGATCCTACTGTTGT
131 GCAAGTCGGGAATCGATC-GGGTCCACCTCTGCATGCTGTCGAT-C--CTG--CT
* *
12565780 AACCCTCGAT-TGGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 -ACCCTCGGTCTAG-TCCAATCTTAGACTGGGAATGAACTCCGTATGC
12565827 CTAAGCCAAC
Statistics
Matches: 193, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
178 1 0.01
179 147 0.76
180 1 0.01
182 3 0.02
184 4 0.02
185 37 0.19
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (179 bp):
ACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCATGTAGGCGCTCAACCGGCCAGAGGGACAGGATAC
GCAAGTCGGGAATCGATCGGGTCCACCTCTGCATGCTGTCGATCCTGCT
Found at i:12566530 original size:26 final size:26
Alignment explanation
Indices: 12566501--12566551 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12566491 CGGTCTGATC
12566501 TTAGACTGGAAATGAACTCCGTATGG
1 TTAGACTGGAAATGAACTCCGTATGG
* * *
12566527 TTAGACTGGGAATGAATTCTGTATG
1 TTAGACTGGAAATGAACTCCGTATG
12566552 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGG
Found at i:12566820 original size:179 final size:179
Alignment explanation
Indices: 12566489--12566889 Score: 453
Period size: 179 Copynumber: 2.2 Consensus size: 179
12566479 TAACCCTTGG
* * * * * **
12566489 TCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGGTTAGACTGGGAATGAATTCTGTATGCC
1 TCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATAAC
* * *
12566554 TAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGACAGGATATGCAAGCTG
66 TAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGACAGGATACGCAAGCCG
* **
12566619 GGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCCCTGA
131 GGAATCGACCGAATCCCCCTCTGCGTGCTACCGATCCTGCTACCCCTGA
*
12566668 TCCGGTCCGATCTTAGACTTGG-AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCATAA
1 TCCGGTCCGATCTTAGAC-TGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATAA
* * * * * *
12566732 CTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCTAGAGGGGCAGGATGCGCAAGCC
65 CTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGACAGGATACGCAAGCC
* * * * ** * *
12566797 GGGAATCGATCGAATCTCCCTCTGTGTGTTGTCGATCCTACTACCACAATCCTCA
130 GGGAATCGACCGAATCCCCCTCTGCGTGCTACCGATCCTGCTA-C-C---CCTGA
* * *
12566852 GTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
1 -TCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATG
12566890 TCTAAGCCAA
Statistics
Matches: 183, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
179 141 0.77
180 4 0.02
181 1 0.01
184 7 0.04
185 30 0.16
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (179 bp):
TCCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATAAC
TAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGAGACAGGATACGCAAGCCG
GGAATCGACCGAATCCCCCTCTGCGTGCTACCGATCCTGCTACCCCTGA
Found at i:12567592 original size:26 final size:25
Alignment explanation
Indices: 12567553--12567604 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12567543 CCAGTCCAAT
*
12567553 CTTAGATTGGAATGAACTCCGTATG
1 CTTAGATGGGAATGAACTCCGTATG
12567578 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGA-TGGGAATGAACTCCGTATG
12567604 C
1 C
12567605 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCCGTATG
Found at i:12567847 original size:179 final size:178
Alignment explanation
Indices: 12567534--12567887 Score: 501
Period size: 179 Copynumber: 2.0 Consensus size: 178
12567524 TGCTGTCGCA
*
12567534 ACCCTCGGTCCAGTCCAATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
1 ACCCTCGGTCCAGTCCAATCTTAGATTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC
** * * * * *
12567599 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAAATGGACAGGATACG
66 GTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCAAAGGGACAGGATACG
*
12567664 CAAGCTGGGAATCGACCGAGTCCCCCTCTGCATGCTACCGATCCTGCT
131 CAAGCTGGGAATCGACCGAGTCCACCTCTGCATGCTACCGATCCTGCT
* * * *
12567712 ACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTT
1 ACCCTCGGTCCAGTCCAATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTC
* * * *
12567777 CGTATAACTAAGTCAACCCACGAAATGAGCATGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGC
65 CGTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCAAAGGGACAGGATAC
* * * * *
12567842 GCAAGCTGGGAATCGACTGGGTCTACCTCTGCGTGCTATCGATCCT
130 GCAAGCTGGGAATCGACCGAGTCCACCTCTGCATGCTACCGATCCT
12567888 ATTGTCACAA
Statistics
Matches: 153, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
178 23 0.15
179 130 0.85
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (178 bp):
ACCCTCGGTCCAGTCCAATCTTAGATTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC
GTATAACTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCAAAGGGACAGGATACG
CAAGCTGGGAATCGACCGAGTCCACCTCTGCATGCTACCGATCCTGCT
Found at i:12568647 original size:26 final size:26
Alignment explanation
Indices: 12568618--12568669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12568608 TGGTCCGATT
12568618 TTAGACT-AGAAATGAACTCCGTATGC
1 TTAGACTGAG-AATGAACTCCGTATGC
12568644 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
12568670 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:12568825 original size:26 final size:26
Alignment explanation
Indices: 12568796--12568872 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
12568786 CCGGTCTGAT
12568796 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
12568822 CTTAGACAGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
12568848 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
12568873 AACTAAGTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12569879 original size:26 final size:26
Alignment explanation
Indices: 12569841--12569891 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12569831 TCAGTTTGAC
12569841 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
12569867 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTTCGTAT
12569892 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12570049 original size:26 final size:26
Alignment explanation
Indices: 12570020--12570070 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12570010 CCAATCCGAT
12570020 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12570046 CTTAGACTTGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
12570071 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12570176 original size:179 final size:179
Alignment explanation
Indices: 12569690--12570176 Score: 634
Period size: 179 Copynumber: 2.7 Consensus size: 179
12569680 AGTCCGACCA
** * *
12569690 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATGAGCGTACGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * *
12569755 GCCAGAGGGGTAGGATGCGCAAGTTGTGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTG
66 GCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * ** *
12569820 CTACCCTTAGTTCAGTTTGACCTTAGACTAGGAATGAACTTCGTATGCT
131 CTACCCTCAGTCCAATCCGACCTTAGACTAGGAATGAACTCCGTATGCT
* *
12569869 TAGACTGGGAATGAACTTCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAG
1 TAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * * * * *
12569934 GCCAGAGGGGCAAGATGCGTAAG-CTGGGGATCGGTCAGGTCCCCCTCTTCGTGCTGTCGATCCT
66 GCCAGAGGGGTAGGATGCGCAAGTC-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
12569998 GCTACCCTCGGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCT
130 GCTACCCTCAGTCCAATCCGACCTTAGACTAGGAATGAACTCCGTATGCT
* ** * * *
12570048 TAGACTTGGAATGAACTCCGTATAACTAAGTCAACCCATAAAACAAGCGTGCGGGTGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
* * ** * * *
12570113 GCCAGAGGGGTAGGATGCACATGTCGGGGATCGACCGGGTCTCCCTCTGCATGCTACCGATCCT
66 GCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
12570177 ACTGCCACAA
Statistics
Matches: 262, Mismatches: 44, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
179 261 1.00
180 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (179 bp):
TAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
GCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
CTACCCTCAGTCCAATCCGACCTTAGACTAGGAATGAACTCCGTATGCT
Found at i:12570960 original size:26 final size:26
Alignment explanation
Indices: 12570924--12570975 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12570914 TTGAACTGAT
*
12570924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12570950 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12570976 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12571138 original size:26 final size:26
Alignment explanation
Indices: 12571100--12571150 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12571090 TCGATCTGAT
*
12571100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12571126 CTTAGACTAGGAATGAATTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
12571151 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12571309 original size:185 final size:176
Alignment explanation
Indices: 12570900--12571311 Score: 459
Period size: 176 Copynumber: 2.3 Consensus size: 176
12570890 GCTGCTGATC
* * * *
12570900 CTGCTACCCTCAGTTTGAACTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
1 CTGCTACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
** * * * *
12570965 AACTCCATATGGCTAAGTCAACCCACGAAACGAGCGGTGGGTGCTCAGCAAGGCAAAGGGGCAGG
66 AACTCCATATAACTAAGTCAACCCACGAAACGAACGGCGGGCGCTCAACAAGGCAAAGGGGCAGG
* * ** **
12571030 ATGCGCAAGCCGGGGATCGATCGGTCACCTTCTGGGTGCTACCGAT
131 ATGCGCAAGCCAGGGATCGATCGGTCACCCTCTACGTGCTACAAAT
12571076 CTGCTACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
1 CTGCTACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
* * * * * *
12571141 AATTCCGTATAACTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAAC-CGGCCAGAGGGGCA
66 AACTCCATATAACTAAGTCAACCCACGAAACGAACG-GCGGGCGCTCAACAAGG-CAAAGGGGCA
* * *
12571205 GGATGTGCAAGCCAGGGATC-AGTCAGGTCTCCCTCTACGTGCTGCAAAT
129 GGATGCGCAAGCCAGGGATCGA-TC-GGTCACCCTCTACGTGCTACAAAT
* * *
12571254 CCTGCTGCCCCAACCCTTGGTTCGGTCTGATCTTAGAATGGGAATGAACTCCGTATGC
1 -CTGCT------ACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
12571312 CTAAGCCAAC
Statistics
Matches: 197, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
176 93 0.47
177 39 0.20
178 17 0.09
179 5 0.03
185 43 0.22
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (176 bp):
CTGCTACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
AACTCCATATAACTAAGTCAACCCACGAAACGAACGGCGGGCGCTCAACAAGGCAAAGGGGCAGG
ATGCGCAAGCCAGGGATCGATCGGTCACCCTCTACGTGCTACAAAT
Found at i:12571796 original size:88 final size:88
Alignment explanation
Indices: 12571647--12571834 Score: 286
Period size: 88 Copynumber: 2.1 Consensus size: 88
12571637 AAAATTCAAC
* * * *
12571647 TAAAAACCCGAAGTTTACAACATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
1 TAAAAACTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
12571712 AATGGCTACTGGCAGCAAACCTG
66 AATGGCTACTGGCAGCAAACCTG
* * *
12571735 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTT
1 TAAAAACTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
12571800 ATTGGCTACTGGCAGCAAACTTG
66 AATGGCTACTGGCAGCAAACCTG
*
12571823 TAAAATCTCAAA
1 TAAAAACTCAAA
12571835 TGCTCTTTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (88 bp):
TAAAAACTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTG
Found at i:12573193 original size:25 final size:26
Alignment explanation
Indices: 12573156--12573207 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
12573146 CTGGTTCGAT
12573156 CTTAGACTTGGAATG-ACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
*
12573181 CTTAGA-TTGGGAATGAACTCTGTATG
1 CTTAGACTT-GGAATGAACTCCGTATG
12573207 C
1 C
12573208 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 12 0.50
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:12574257 original size:26 final size:26
Alignment explanation
Indices: 12574221--12574271 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12574211 GGTCTGATCC
12574221 TAGACTGGGAATGAACTTCC-TATGCT
1 TAGACTGGGAATGAAC-TCCGTATGCT
12574247 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
12574272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:12575419 original size:179 final size:179
Alignment explanation
Indices: 12575107--12575450 Score: 472
Period size: 179 Copynumber: 1.9 Consensus size: 179
12575097 CCCTCAGTTC
* * ** **
12575107 GGTTCGATTTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATCCCTAA
1 GGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
* * * *
12575172 GTCAACCCATGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGG
66 GTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGG
* *
12575237 ATCGACCAGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTCT
131 ATCGACCAGGTCCCCCTCTACGTGCTGCCAATCCTACTACCCTCGGTCT
* * *
12575286 GGTTTGATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAA
1 GGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
** * * *
12575351 GTCAACCCACGAAACGAGTGTGCGGGCGCTTAGCCGACCGGAGGGGCAGGATGCCCAAGTCAGGG
66 GTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGG
** * *
12575416 ATCGGTCGGGTCTCCCTCTACGTGCTGCCAATCCT
131 ATCGACCAGGTCCCCCTCTACGTGCTGCCAATCCT
12575451 GCTGTCGCAA
Statistics
Matches: 141, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
179 141 1.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (179 bp):
GGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAA
GTCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGG
ATCGACCAGGTCCCCCTCTACGTGCTGCCAATCCTACTACCCTCGGTCT
Found at i:12576472 original size:179 final size:179
Alignment explanation
Indices: 12576191--12576525 Score: 472
Period size: 179 Copynumber: 1.9 Consensus size: 179
12576181 CGGTCCGATT
* ** **
12576191 TTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATCCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCA
* * * *
12576256 TGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCAG
66 CGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGGATCGACCAG
* *
12576321 GTCCCCCTCTGCGTGCTGCCGATCCTACTACCCTCGGTCTGGTTTGATC
131 GTCCCCCTCTACGTGCTGCCAATCCTACTACCCTCGGTCTGGTTTGATC
* *
12576370 TTAGACTGGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCA
** * * * ** *
12576435 CGAAACGAGTGTGCGGGCGCTTAGCCGACCGGAGGGGCAGGATGCCCAAGTCAGGGATCGGTCGG
66 CGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGGATCGACCAG
*
12576500 GTCTCCCTCTACGTGCTGCCAATCCT
131 GTCCCCCTCTACGTGCTGCCAATCCT
12576526 GCTATCGCAA
Statistics
Matches: 134, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
179 134 1.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (179 bp):
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATAACTAAGTCAACCCA
CGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGTCAGGGATCGACCAG
GTCCCCCTCTACGTGCTGCCAATCCTACTACCCTCGGTCTGGTTTGATC
Found at i:12577289 original size:26 final size:26
Alignment explanation
Indices: 12577260--12577315 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12577250 CTGATCCGAT
* * *
12577260 CTTAGATTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12577286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12577312 CTTA
1 CTTA
12577316 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12577545 original size:179 final size:178
Alignment explanation
Indices: 12577241--12577662 Score: 503
Period size: 179 Copynumber: 2.4 Consensus size: 178
12577231 TGCTGCCACA
* * *
12577241 ACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAATTCTGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCTTAGATTGGG-ATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* ** * * *
12577306 CGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAGGCCAAATGGGCAGGATGC
65 CGTATACTTAAGTCAACCCACAAAACGAGCGTGCGGGTGCACAGCAGACCAAAGGGGCAGGATGC
* *
12577371 GCAAGCCGA-GGATCGGTCGGGT-CCCCTTCTACGTGCTGTC-ATTCCTGCT
130 GCAAG-CGAGGGATCGGCCGGGTCCCCCTT-TACGTGCTGGCGA-TCCTGCT
* * *
12577420 ACCCTCGGTCCGATCCGATCTTAGACTGAGGATGCACTCCATATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCCGATCTTAGATTG-GGATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
12577485 CGTATAAC-TAAGTCAACCCACAAAACGAGCGTGCGGGTGCACAGTC-GACCAGAGGGGCAGGAT
65 CGTAT-ACTTAAGTCAACCCACAAAACGAGCGTGCGGGTGCACAG-CAGACCAAAGGGGCAGGAT
* ** * * *
12577548 GCGTAAGTTAGGGATTGGCCTGGTCCCCCTTTGCGTGCTGGCGATCCTGCT
128 GCGCAAGCGAGGGATCGGCCGGGTCCCCCTTTACGTGCTGGCGATCCTGCT
* * * * *
12577599 ACCCTCAGTTCAATCCGATCTGAGATTGGGATTGAACTTCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCGGTCCGATCCGATCTTAGATTGGGA-TGAACTCCGTATGCTTAGACTGGGAATGAACT
12577663 TCATATGCTT
Statistics
Matches: 207, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
178 4 0.02
179 192 0.93
180 11 0.05
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (178 bp):
ACCCTCGGTCCGATCCGATCTTAGATTGGGATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATACTTAAGTCAACCCACAAAACGAGCGTGCGGGTGCACAGCAGACCAAAGGGGCAGGATGCG
CAAGCGAGGGATCGGCCGGGTCCCCCTTTACGTGCTGGCGATCCTGCT
Found at i:12577661 original size:26 final size:26
Alignment explanation
Indices: 12577625--12577714 Score: 144
Period size: 26 Copynumber: 3.5 Consensus size: 26
12577615 GATCTGAGAT
*
12577625 TGGGATTGAACTTCGTATGCTTAGAC
1 TGGGAATGAACTTCGTATGCTTAGAC
*
12577651 TGGGAATGAACTTCATATGCTTAGAC
1 TGGGAATGAACTTCGTATGCTTAGAC
* *
12577677 TGGGATTGAACTTTGTATGCTTAGAC
1 TGGGAATGAACTTCGTATGCTTAGAC
12577703 TGGGAATGAACT
1 TGGGAATGAACT
12577715 CTGCATAACT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 58 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TGGGAATGAACTTCGTATGCTTAGAC
Found at i:12578595 original size:26 final size:26
Alignment explanation
Indices: 12578566--12578616 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12578556 CTGATCCGAT
*
12578566 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
12578592 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12578617 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:12578873 original size:153 final size:153
Alignment explanation
Indices: 12578592--12578878 Score: 351
Period size: 153 Copynumber: 1.9 Consensus size: 153
12578582 ACTCTGTATC
* * * * *
12578592 CTTAGATTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAAC
* * * * * * * *
12578657 CGGCCAGAGGGGCAGGATGCGTAAGTCAGGGATCGGTCGGGTCCCACTCTACGTGCTGTCGATCT
66 CGGCCAGAGGAGCAGAATGCGCAAATCAGGGACCAGTCGGGTCCCACTCTACATGCTGCCGATCT
12578722 TGCTACCCTCAGTCTGATCCGAT
131 TGCTACCCTCAGTCTGATCCGAT
* * * * *
12578745 CTTAGACTAGGAATGAACTCCGTATAACTAAGTGAACCCATGAAATAAGGGTACGGGTGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAAC
* * * * *
12578810 CGGCTAGAGGAGTAGAATGTGCAAATCGGGGACCAGTCGGGTCTCC-CTCTGCATGCTGCCGATC
66 CGGCCAGAGGAGCAGAATGCGCAAATCAGGGACCAGTCGGGTC-CCACTCTACATGCTGCCGATC
12578874 TTGCT
130 TTGCT
12578879 GCTACAACCC
Statistics
Matches: 110, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
153 108 0.98
154 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (153 bp):
CTTAGACTAGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAAC
CGGCCAGAGGAGCAGAATGCGCAAATCAGGGACCAGTCGGGTCCCACTCTACATGCTGCCGATCT
TGCTACCCTCAGTCTGATCCGAT
Found at i:12579631 original size:26 final size:26
Alignment explanation
Indices: 12579602--12579654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12579592 CCGGTTCGAT
12579602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12579628 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12579654 C
1 C
12579655 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12580089 original size:26 final size:26
Alignment explanation
Indices: 12580051--12580101 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12580041 CTGGTCTGAT
* *
12580051 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12580077 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
12580102 AATTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12580987 original size:26 final size:26
Alignment explanation
Indices: 12580949--12581001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12580939 CTGGTCCGAT
12580949 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12580975 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12581001 C
1 C
12581002 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12581164 original size:26 final size:26
Alignment explanation
Indices: 12581127--12581177 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12581117 CCGGTCTGAT
*
12581127 CTTAGATGGGGAATGAACTTCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
*
12581153 CTTAGACT-GGGAGTGAACTCCGTAT
1 CTTAGA-TGGGGAATGAACTCCGTAT
12581178 AACTAGGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:12582074 original size:26 final size:26
Alignment explanation
Indices: 12582024--12582079 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12582014 CCGATCCGAT
*
12582024 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATC
**
12582050 CTTAGACTAGGAATGAACTTTGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
12582076 CTTA
1 CTTA
12582080 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:12582232 original size:26 final size:26
Alignment explanation
Indices: 12582203--12582253 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12582193 CTAATTCGAT
*
12582203 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
12582229 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
12582254 AACTAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12582553 original size:26 final size:26
Alignment explanation
Indices: 12582516--12582566 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12582506 CCGGTTTGAT
* *
12582516 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
12582542 CTTAGACCGGGAGTGAACTCCGTAT
1 CTTAGACCGGGAATGAACTCCGTAT
12582567 AACTAGGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:12582717 original size:313 final size:313
Alignment explanation
Indices: 12582128--12582742 Score: 802
Period size: 313 Copynumber: 2.0 Consensus size: 313
12582118 CCAGAGGGGC
* * * * *
12582128 AGGATGCGTAAGCCAGGGATCGACCGGGTCCCTCTCAGTGTGCTATCGATCCTATTACCCGCGGT
1 AGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCAGCGTGCTATCGATCCTACTACCCGCGGT
* *
12582193 CTAATTCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATAACT
66 CCAATTCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACCGGGAATGAACTCCGTATAACT
* * * * *
12582258 AAATCAACCCACAGAATGAGCATGCGGACACTCAGCCGGCCAGAGGGGTAGGATGCGTAAGCCGG
131 AAATCAACCCACAGAACGAGCATACGGACACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGG
** * * * * *
12582323 GGATCGGCCGGGTCTCCCTCTACGTGCTGTTGATCTTGCTACCGCAACCCTCAATCTGGTCTGAT
196 GGATCAACCGGGTCTCCCTCTACGTGCTGTCGATCCTGCGACCACAACCCTCAATCTGATCTGAT
** ** *
12582388 CTTAGACTGGGAATGAACTCTGTATGACTAAGCCAACCGACGGCTAGATGGGT
261 CTTAGACTACGAATGAACTCCATATGACTAAACCAACCGACGGCTAGATGGGT
* * * **
12582441 AGGATACGCAAGCCTGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCCTTGGT
1 AGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCAGCGTGCTATCGATCCTACTACCCGCGGT
** * * *
12582506 CCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACCGGGAGTGAACTCCGTATAACT
66 CCAATTCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACCGGGAATGAACTCCGTATAACT
** * * *
12582571 AGGTCAACCCA-AGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCG
131 AAATCAACCCACAG-AACGAGCATACGGACACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCG
* * **
12582635 GGGATCAACCGGGTCTCTCTCTGCGTGCTGTCGATCCTGCGACCACAACCCTTGAT-TCGATCTG
195 GGGATCAACCGGGTCTCCCTCTACGTGCTGTCGATCCTGCGACCACAACCCTCAATCT-GATCTG
*
12582699 ATCTTAGACTACGAATGAACTCCATATGCCTAAACCAACCGACG
259 ATCTTAGACTACGAATGAACTCCATATGACTAAACCAACCGACG
12582743 AAACGAGCAG
Statistics
Matches: 256, Mismatches: 44, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
312 3 0.01
313 253 0.99
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (313 bp):
AGGATACGCAAGCCAGGGATCGACCGGGTCCCCCTCAGCGTGCTATCGATCCTACTACCCGCGGT
CCAATTCGATCTTAGACTGGAAATGAACTTCGTATGCTTAGACCGGGAATGAACTCCGTATAACT
AAATCAACCCACAGAACGAGCATACGGACACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGG
GGATCAACCGGGTCTCCCTCTACGTGCTGTCGATCCTGCGACCACAACCCTCAATCTGATCTGAT
CTTAGACTACGAATGAACTCCATATGACTAAACCAACCGACGGCTAGATGGGT
Found at i:12583440 original size:26 final size:26
Alignment explanation
Indices: 12583410--12583476 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
12583400 GTCTGGTCTG
12583410 ATGAACTCCGTATGCTTAAACTGGGA
1 ATGAACTCCGTATGCTTAAACTGGGA
12583436 ATGAACTCCGTATGCTTAAACTGGGA
1 ATGAACTCCGTATGCTTAAACTGGGA
*
12583462 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
12583477 CTAAGTCAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAAACTGGGA
Found at i:12583631 original size:26 final size:26
Alignment explanation
Indices: 12583602--12583652 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12583592 CTGGTCTGAT
*
12583602 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12583628 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
12583653 AACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12584529 original size:26 final size:26
Alignment explanation
Indices: 12584493--12584544 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12584483 CGATCCGATA
*
12584493 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
12584519 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
12584545 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:12584804 original size:179 final size:179
Alignment explanation
Indices: 12584473--12584811 Score: 471
Period size: 179 Copynumber: 1.9 Consensus size: 179
12584463 TGCTGTCACA
* * *
12584473 ACCCTCAGTCCGATCCGATATTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCAGTCCCATCCGATATTAGACTGGGAATGAACTTCGTATGCTTACACTGGAAATGAACTC
** *
12584538 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCAAAAGGGGCAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCAAAAGGGGCAGGATGC
* **
12584603 GCAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTATCGATCCTGCT
131 ACAAGCCGAGGATCAATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCT
* * * * *
12584652 ACCCTCGGTCCCATCTGATCTTAGATTGGGAATGAACTTCTTATGCTTACACTGGAAATGAACTC
1 ACCCTCAGTCCCATCCGATATTAGACTGGGAATGAACTTCGTATGCTTACACTGGAAATGAACTC
* * * * *
12584717 CGTATAACTAAGTTAACCCTCGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCAGGATGC
66 CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCAAAAGGGGCAGGATGC
* * * *
12584782 ATAAGCTGGGGATCAATCGGGTCTCCCTCT
131 ACAAGCCGAGGATCAATCGGGTCCCCCTCT
12584812 ACATGCTACC
Statistics
Matches: 137, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
179 137 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (179 bp):
ACCCTCAGTCCCATCCGATATTAGACTGGGAATGAACTTCGTATGCTTACACTGGAAATGAACTC
CGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCAAAAGGGGCAGGATGC
ACAAGCCGAGGATCAATCGGGTCCCCCTCTGTGTGCTATCGATCCTGCT
Found at i:12586100 original size:311 final size:311
Alignment explanation
Indices: 12585520--12586189 Score: 756
Period size: 314 Copynumber: 2.1 Consensus size: 311
12585510 CATGTGCTGC
* * * * * *
12585520 CACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTTTGTATGCGTAAGTCAACCCACG
1 CACAACCCTCGATCCGATCCGATCATAGACTGAGAATGAACTCTATATGCCTAAGTCAACCCACG
* * *
12585585 AAACGAGCGTGCGGGCACTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCTTGT
66 AAACGAGCGTGCGGGCACTAAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGACTGGT
* * **
12585650 CCCCCCTACGTGCTGCCGGTCCCGCTACCACAACCTTCGGTTTGACTGGGGCTTAGACATGGAAT
131 CCCCCCTACGTGCT--C-GTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
* * * * *
12585715 GAACTCCCTGTTCCTAAGCCAACCCACAAAACGAGCGTGCGGGCAGTCAGTTGGCCAGAGAGGTA
193 GAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCAGTCAGTCGGCCAGAGAGGCA
12585780 GAATGCGTAAGCCGGGATCAGCCCGATCCCCCCGGTGTGCTATCAATCCTGTCG
258 GAATGCGTAAGCCGGGATCAGCCCGATCCCCCCGGTGTGCTATCAATCCTGTCG
** *
12585834 CACAACCCTCGATCCGATTTGATCATAGACTGAGAGTGAACTCTATATGCCTAAGTCAACCCACG
1 CACAACCCTCGATCCGATCCGATCATAGACTGAGAATGAACTCTATATGCCTAAGTCAACCCACG
* * * * * *
12585899 AAATGAGTGTTCGGGCCCTGAGCCGACCGAAGAGGCATAAT-CGCAAGCTGGGGATC-GACTAGG
66 AAACGAGCGTGCGGGCACTAAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGACT-GG
* *
12585962 TCCCCCTCTACGTGCT-GTCCCTGTTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
130 TCCCCC-CTACGTGCTCGTCCC-GCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
* ** * * *
12586026 GAACTCCTTATGCCTAAGCCAACCCATGAAACG-GACGTGCAGGC-GCTCAGTCGGTCGGAGGGG
193 GAACTCCCTATGCCTAAGCCAACCCACAAAACGAG-CGTGCAGGCAG-TCAGTCGGCCAGAGAGG
* * * * * ** * * * **
12586089 CAGAATGCGTAAGCAGGGGATCGGCCTGGTCACCCTTGTGTGTTACCGATCCTGTTAT
256 CAGAATGCGTAAGC-CGGGATCAGCCCGATCCCCCCGGTGTGCTATCAATCCTG-TCG
* * * *
12586147 CGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
1 CACAACCCTCGATCCGATCCGATCATAGACTGAGAATGAACTC
12586190 GGTATGCTTA
Statistics
Matches: 295, Mismatches: 54, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
310 7 0.02
311 98 0.33
312 32 0.11
313 58 0.20
314 100 0.34
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (311 bp):
CACAACCCTCGATCCGATCCGATCATAGACTGAGAATGAACTCTATATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCACTAAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGACTGGT
CCCCCCTACGTGCTCGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAA
CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCAGTCAGTCGGCCAGAGAGGCAGAA
TGCGTAAGCCGGGATCAGCCCGATCCCCCCGGTGTGCTATCAATCCTGTCG
Found at i:12586211 original size:26 final size:26
Alignment explanation
Indices: 12586170--12586222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12586160 CCGATCCGAT
*
12586170 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12586196 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
12586222 C
1 C
12586223 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12586546 original size:170 final size:170
Alignment explanation
Indices: 12586195--12586557 Score: 401
Period size: 171 Copynumber: 2.1 Consensus size: 170
12586185 AACTCGGTAT
* * ** *
12586195 GCTTAGAC-TGGTGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGTTCA
1 GCTTAGACATGG-GATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCA
* * * * * *
12586259 GCCGATCGAAGAGGCATAAAGCGTAAGCCGAGGATTAGCCCGGTCCCCCTCTACGTGCTGTCGAT
65 GCCAACCGAAGAGGCAGAAAGCGCAAGCCGAGGATCAGCCCGGTCCCCCACTACGTGCTGTCGAT
* *
12586324 CCCGCTACCGGTCCTGCTGCTACAACCCTCAGTCCGGCTGGG
130 CCCGCTACCGGTCCTGCTGCTA-AACCCTCAATCCGGCTGGA
* *
12586366 GCTTAGACATGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * * *
12586431 CCAACCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCTGGT-CCCCACTACGTGCTGTCGATC
66 CCAACCGAAGAGGCAGAAAGCGCAAGCCGAGGATCAGCCCGGTCCCCCACTACGTGCTGTCGATC
* * * * *
12586495 CTGCTACTGGTCCTGCTATCGT-AACCCTCAATTCGATCT-GA
131 CCGCTACCGGTCCTGCT-GC-TAAACCCTCAATCCG-GCTGGA
* *
12586536 TCTTAGACATGGAATGAACTCC
1 GCTTAGACATGGGATGAACTCC
12586558 ACATGCTTAG
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
170 66 0.42
171 89 0.56
172 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
CCAACCGAAGAGGCAGAAAGCGCAAGCCGAGGATCAGCCCGGTCCCCCACTACGTGCTGTCGATC
CCGCTACCGGTCCTGCTGCTAAACCCTCAATCCGGCTGGA
Found at i:12586656 original size:367 final size:355
Alignment explanation
Indices: 12585981--12586660 Score: 828
Period size: 367 Copynumber: 1.9 Consensus size: 355
12585971 ACGTGCTGTC
* *
12585981 CCTGTTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCC
1 CCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * *** * *
12586046 AACCCATGAAACGGACGTGCAGGCGCTCAGTCGGTCGGAGGGGCAGAATGCGTAAGCAGGGGATC
66 AACCCACGAAACGGACGTGCAGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCAGGGGATC
* * **
12586111 GGCCTGGTCACCCTTGTGTGTTACCGATCCTGTTATCGCAACCCTCGGTCCGATCCGATCTTAGA
131 AGCCTGGTCACCCTTGTGTGTTACCGATCCTGCTATCGCAACCCTCAATCCGATCCGATCTTAGA
*** * * *
12586176 CTGGGAATGAACTCGGTATGCTTAGACTGGTGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
196 CTGGGAATGAACTCCACATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * *
12586241 CGAGCGTGCGGGTGTTCAGCCGATCGAAGAGGCATAAAGCGTAAGCCGAGGATTAGCCCGGTCCC
261 CGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAAAGAGCAAGCCGAGGATTAGCCCGGTCCC
12586306 CCTCTACGTGCTGTCGATCCCGCTACCGGT
326 CCTCTACGTGCTGTCGATCCCGCTACCGGT
* * * *
12586336 CCTGCTGCTACAACCCTCAGTCCGGCTGGGGCTTAGACATGGGATGAACTTCGTATGCCTAAGCC
1 CCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * *
12586401 AACCCACGAAA-TGAGCGTGC-GGACGCTCAGCCAACCGGAGAGGTAGAATGTGCAAGCCGGGGA
66 AACCCACGAAACGGA-CGTGCAGG-CGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCAGGGGA
* * * * *
12586464 TCAGCCTGGTCCCCACTACGTGCTGTCGATCCTGCTACTGGTCCTGCTATCGTAACCCTCAATTC
129 TCAGCCTGGTCACC-CT---TG-TGT-G----T--TACCGATCCTGCTATCGCAACCCTCAATCC
*
12586529 GATCTGATCTTAGACAT-GGAATGAACTCCACATGCTTAGACATGG-AATGAACTCCGTATGCCT
182 GATCCGATCTTAGAC-TGGGAATGAACTCCACATGCTTAGAC-TGGTAATGAACTCCGTATGCCT
* *
12586592 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGAGCAAGCCGA
245 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAAAGAGCAAGCCGA
12586657 GGAT
310 GGAT
12586661 CGACCCGATC
Statistics
Matches: 269, Mismatches: 40, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
354 4 0.01
355 117 0.43
356 2 0.01
359 2 0.01
360 3 0.01
361 1 0.00
365 1 0.00
367 135 0.50
368 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (355 bp):
CCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGGACGTGCAGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCAGGGGATC
AGCCTGGTCACCCTTGTGTGTTACCGATCCTGCTATCGCAACCCTCAATCCGATCCGATCTTAGA
CTGGGAATGAACTCCACATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAAAGAGCAAGCCGAGGATTAGCCCGGTCCC
CCTCTACGTGCTGTCGATCCCGCTACCGGT
Found at i:12586990 original size:159 final size:155
Alignment explanation
Indices: 12586562--12587064 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 155
12586552 AACTCCACAT
*
12586562 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12586627 CCGACCGGAGAGGCAGAATGAGCAAGCCGAGGATCGACCCGATCTCCCCTGCATGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAA-TCGAGGATCGA-CCGATC-CCCCTGCGTGCTATCGAGCC
* * *
12586692 TGCTGTCGCAACCCTTGGTCCGTTCTGA
128 TGCTGTCACAACCCTCGGTCCGTGCTGA
* * * * * *
12586720 TCTTAGAC-TAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** *
12586784 GCCGGCCAGAGAGGCATAATGCAAAAATCGAGGATCGACTCGGTCCCCTTCTGCGTGCTATCG-G
65 GCCGGCCGGAGAGGCAGAATGC-GCAATCGAGGATCGAC-CGATCCCC--CTGCGTGCTATCGAG
*
12586848 CCTCGCTGTCACAACCCTCGGTCCG-GCTAGG
126 CCT-GCTGTCACAACCCTCGGTCCGTGCT-GA
* ** * * * * *
12586879 GCTTAGACATGGAATGAACTCCCTACACCTAAGCCAACCCATGAAACGGGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
12586944 TCGGTCGGAGTGGCAGAATGCGCAATCTGGGGATCGATCCGATCCCCCCTGCGTGTTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAATC-GAGGATCGA-CCGAT-CCCCCTGCGTGCTATCGAGCC
* * * *
12587009 TACTG-CAGCACCCCTCAGTCCAGTTC-GA
128 TGCTGTCA-CAACCCTCGGTCC-GTGCTGA
* *
12587037 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12587065 TTAGAATGAG
Statistics
Matches: 272, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 8 0.03
158 143 0.53
159 114 0.42
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAATCGAGGATCGACCGATCCCCCTGCGTGCTATCGAGCCTGC
TGTCACAACCCTCGGTCCGTGCTGA
Found at i:12588665 original size:26 final size:26
Alignment explanation
Indices: 12588613--12588665 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12588603 TCGATTCGAT
* *
12588613 CTTAGGCTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
12588639 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
12588665 C
1 C
12588666 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:12589263 original size:343 final size:341
Alignment explanation
Indices: 12587955--12589274 Score: 1457
Period size: 343 Copynumber: 3.9 Consensus size: 341
12587945 CGGTCCGATA
* * * * * ** *
12587955 TTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCT
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
* * * * *
12588020 GGCTGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGGTCCC
66 GGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTACGTGCTGCCGGTCCC
* * * * * *
12588085 ACTGCAACAACCCTCGGTCTGACTAGTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
* * * * * * * * * *
12588150 CCATGAAATGGGCGTACGGGTGCTGAGCCAGTTGAAAAGGCAGAATGCGTAAGCCGGGGATCGAC
196 CCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGC
* ** * *
12588215 CCAGTTGCCCCTGCGTGCTGCTGATCTTGCTGTCACAACCC-CAGTCTGATCCGATCTTAGACTG
261 CGA-TCCCCCCTGCGTGCTGCTGATCCTGCTATCACAACCCTCAG-CTGATCCGATCTTAGACTG
* * * *
12588279 GGAATCAACTCCGTTTGT
324 GGAATGAACTTCGTATGC
* * * * * *
12588297 TTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGTGCTCAACC
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
* * * * * * *
12588362 GGCTGGAAAGGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCGTTATGTGCTGCCAGTCCC
66 GGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTACGTGCTGCCGGTCCC
* * * *
12588427 GCTGCCACAACCCTCGAACTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
* * * * *
12588492 CCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGGAAAGGTAGAATGTGCAAGCTGGGGATCGGC
196 CCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * * *
12588557 TCGATCCCCCCTGCGTGCTGCTGATACTGCT-GCTACAACCCTCAGTTCGATTCGATCTTAGGCT
261 -CGATCCCCCCTGCGTGCTGCTGATCCTGCTATC-ACAACCCTCAGCT-GATCCGATCTTAGACT
*
12588621 GGGAATGAAC-TCTGGATGC
323 GGGAATGAACTTC-GTATGC
*
12588640 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGTGGGCGCTCAG-T
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
* * * * * **
12588704 CGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCGTTGCGTGCTGTAGGTCC
66 -GGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTACGTGCTGCCGGTCC
* * * * *
12588769 TGCTGCCACAACCCTCGGTCCGACTAGGGCATAGAAATGGAATGAAATCCCTATACCTAAGCCAA
130 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
* * * * * *
12588834 CCCACAAAACGGGCGTGTGGGCGCTCAGTCGGTCGGAGAGGCAGAATACGCAAGTCGGGGATCGG
195 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATC-G
* * * *
12588899 GCCGATCCCCCCTACGTGCTG-TCGATCCTGCTATCGCAACCCTCAGACTGGTCCAATCTTAGAC
259 GCCGATCCCCCCTGCGTGCTGCT-GATCCTGCTATCACAACCCTCAG-CTGATCCGATCTTAGAC
*
12588963 TGGTAATGAACTTCGTATGC
322 TGGGAATGAACTTCGTATGC
* * **
12588983 TTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTACTCAGCT
1 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
* * * * ** *
12589048 -GATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCGATCCCCTGCTGTGTGCTGTCGGTCC
66 GGCT-GGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTACGTGCTGCCGGTCC
* * * * * *
12589112 CGCTACCACAACCCTCGATCCGACTGGGGTTTAGACTTGGAATGAACTCACTTTACCTAAGCCAA
130 CGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
* * * *
12589177 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATTGG
195 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGG
* *
12589242 TCCGGTCCCCCTTGCGTGCTG-TCGATCCTGCTA
260 -CCGATCCCCCCTGCGTGCTGCT-GATCCTGCTA
12589275 CCTGTCCTGC
Statistics
Matches: 823, Mismatches: 141, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
341 1 0.00
342 254 0.31
343 560 0.68
344 8 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (341 bp):
TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
GGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTACGTGCTGCCGGTCCC
GCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
CCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGC
CGATCCCCCCTGCGTGCTGCTGATCCTGCTATCACAACCCTCAGCTGATCCGATCTTAGACTGGG
AATGAACTTCGTATGC
Found at i:12589449 original size:686 final size:680
Alignment explanation
Indices: 12587956--12589422 Score: 1474
Period size: 686 Copynumber: 2.2 Consensus size: 680
12587946 GGTCCGATAT
* * * * * * * * * * *
12587956 TAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAACCG
* * * * * * * * *** *
12588021 GCTGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-TCTACGTGCTACCGGTCCC
66 ACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGT-TGCCTGCTGTAGGTCCT
* * * * * * *
12588085 ACTGCAACAACCCTCGGTCTGACTAGTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
130 GCTGCAACAACCCTCGGTCCGACTAGGGCATAGAAATGGAATGAAATCCCTATACCTAAGCCAAC
** * * * * * *
12588150 CCATGAAATGGGCGTACGGGTGCTGAGCCAGTTGAAAAGGCAGAATGCGTAAGCCGGGGATCGAC
195 CCACAAAACGGGCGTACGGGCGCTCAGCCAGTCGAAAAGGCAGAATACGCAAGCCGGGGATCGAC
** * * * * *
12588215 CCAGTTGCCCCTGCGTGCTGCTGATCTTGCTGTCACAACCCCAGTCTGATCCGATCTTAGACTGG
260 CCAGTCCCCCCTACGTGCTGCTGATCCTGCTATCACAACCCCAGACTGATCCAATCTTAGACTGG
* * * **
12588280 GAATCAACTCCGTTTGTTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCATGAAACGAG
325 GAATCAACTCCGTATGCTTAGACTGAGGATGAACTCAGTATGCCTAAGTCAACCCACAAAACGAG
* * * * *
12588345 TGTGTGGGTGCTCAACCGGCTGGAAAGGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCGT
390 CGTGTGGGTACTCAACCGGCTGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCGC
* *
12588410 TATGTGCTGCCAGTCCCGCTGCCACAACCCTCGAACTGACTGGGGCTTAGACATGGAATGAACTC
455 TATGTGCTGCCAGTCCCGCTACCACAACCCTCGAACCGACTGGGGCTTAGACATGGAATGAACTC
* * * *
12588475 CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGGAAAGGTAGAATGT
520 ACTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGGAAAGGCAGAATGC
* * *
12588540 GCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTGCTGATACTGCTGCTACAACCCTCAGTTC
585 GCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGCTGATAC-GCTGCT--AACCCT-AGTCC
* * * ** ** * *
12588605 GATTCGATCTTAGGCTGGGAATGAACTCTGGATGCT
646 GATGCCATCTAACCCTCAGAACGAAC-CTGGATGCA
* * * * **
12588641 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGTGGGCGCTCAGTCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAACCG
* * * * *
12588706 GCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCGTTGCGTGCTGTAGGTCCTG
66 ACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGTTGCCTGCTGTAGGTCCTG
*
12588771 CTGCCACAACCCTCGGTCCGACTAGGGCATAGAAATGGAATGAAATCCCTATACCTAAGCCAACC
131 CTGCAACAACCCTCGGTCCGACTAGGGCATAGAAATGGAATGAAATCCCTATACCTAAGCCAACC
** * * * * * **
12588836 CACAAAACGGGCGTGTGGGCGCTCAGTCGGTCGGAGAGGCAGAATACGCAAGTCGGGGATCGGGC
196 CACAAAACGGGCGTACGGGCGCTCAGCCAGTCGAAAAGGCAGAATACGCAAGCCGGGGATCGACC
* *
12588901 C-GATCCCCCCTACGTGCTG-TCGATCCTGCTATCGCAACCCTCAGACTGGTCCAATCTTAGACT
261 CAG-TCCCCCCTACGTGCTGCT-GATCCTGCTATCACAACCC-CAGACTGATCCAATCTTAGACT
* * * *
12588964 GGTAATGAACTTCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
323 GGGAATCAACTCCGTATGCTTAGACTGAGGATGAACTCAGTATGCCTAAGTCAACCCACAAAACG
* * * * * * *
12589029 AGCGTGTGGGTACTC-AGCTGATCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCGATCCCC
388 AGCGTGTGGGTACTCAACCGGCT-GGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCC
* * * * * * *
12589093 TGCTGTGTGCTGTCGGTCCCGCTACCACAACCCTCGATCCGACTGGGGTTTAGACTTGGAATGAA
452 CGCTATGTGCTGCCAGTCCCGCTACCACAACCCTCGAACCGACTGGGGCTTAGACATGGAATGAA
* * * *
12589158 CTCACTTTACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAA
517 CTCACTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGGAAAGGCAGAA
* * * *
12589223 TGCGTAAGCCGAGGATTGG-TCCGGTCCCCCTTGCGTGCTG-TCGAT-C-CTGCT-A-CCT-GTC
582 TGCGCAAGCCGAGGATCGGCT-CGATCCCCCCTGCGTGCTGCT-GATACGCTGCTAACCCTAGTC
* ** *
12589281 CTGCTGCCA-C-AACCCTCAGTCCGGA-CT-GAT-CA
645 C-GATGCCATCTAACCCTCAGAACGAACCTGGATGCA
* * * *
12589313 TAGATTGGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAACCG
* * ** *
12589378 ATCGGAGAGGCAGACTGCGTAAGTTGGGGATC-GACCCGATCCCCC
66 ACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAG-CCCGATCCCCC
12589423 CTATGTGCTG
Statistics
Matches: 642, Mismatches: 131, Indels: 31
0.80 0.16 0.04
Matches are distributed among these distances:
671 1 0.00
672 90 0.14
673 3 0.00
674 2 0.00
676 6 0.01
677 4 0.01
678 4 0.01
679 3 0.00
680 1 0.00
683 5 0.01
684 2 0.00
685 250 0.39
686 271 0.42
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (680 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCACTCAACCG
ACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGTTGCCTGCTGTAGGTCCTG
CTGCAACAACCCTCGGTCCGACTAGGGCATAGAAATGGAATGAAATCCCTATACCTAAGCCAACC
CACAAAACGGGCGTACGGGCGCTCAGCCAGTCGAAAAGGCAGAATACGCAAGCCGGGGATCGACC
CAGTCCCCCCTACGTGCTGCTGATCCTGCTATCACAACCCCAGACTGATCCAATCTTAGACTGGG
AATCAACTCCGTATGCTTAGACTGAGGATGAACTCAGTATGCCTAAGTCAACCCACAAAACGAGC
GTGTGGGTACTCAACCGGCTGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCGCT
ATGTGCTGCCAGTCCCGCTACCACAACCCTCGAACCGACTGGGGCTTAGACATGGAATGAACTCA
CTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGGAAAGGCAGAATGCG
CAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGCTGATACGCTGCTAACCCTAGTCCGATGC
CATCTAACCCTCAGAACGAACCTGGATGCA
Found at i:12589822 original size:26 final size:26
Alignment explanation
Indices: 12589786--12589835 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12589776 CCGGTCCAAT
*
12589786 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
12589812 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
12589836 GGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12590159 original size:26 final size:26
Alignment explanation
Indices: 12590130--12590182 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12590120 CTAGTCCGAT
*
12590130 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12590156 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12590182 C
1 C
12590183 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12590652 original size:184 final size:184
Alignment explanation
Indices: 12590339--12590697 Score: 461
Period size: 184 Copynumber: 2.0 Consensus size: 184
12590329 TCCGACTGGG
* * * * * * *
12590339 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCTACCCACGAAATGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAATGAGCGTGCGGGCGCTCAG
* ** * * *
12590404 CCGACTGAAGAGACAGAATGCGTAAGTCGGGGAATGGCTCGATCCCCCCTGTGTGCTATCGATCC
66 CCAACTGAAGAGACAGAATGCACAAGTCGGGGAATGACCCGATCCCCCCTGCGTGCTATCGATCC
* *
12590469 TACTACCGCAACCTTCGTTCC-AGTCCGATCTTAGATTGGGAATGAACCCCTTAT
131 TACTACCGCAACCCTCGATCCGA-TCCGATCTTAGATTGGGAATGAACCCCTTAT
* *
12590523 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCAAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * *
12590588 CCAACTGGAGAGGCAGAATGCACAAGTTGGGG-ATCGACCCGATCCCCCCTGCGTGCTGTCGATC
66 CCAACTGAAGAGACAGAATGCACAAGTCGGGGAAT-GACCCGATCCCCCCTGCGTGCTATCGATC
* * * *
12590652 CTGCTATCGTAACCCTCGATCCGATCTGATCTTAGATTGGGAATGA
130 CTACTACCGCAACCCTCGATCCGATCCGATCTTAGATTGGGAATGA
12590698 CCTTCGTATG
Statistics
Matches: 148, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 145 0.98
185 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAATGAGCGTGCGGGCGCTCAG
CCAACTGAAGAGACAGAATGCACAAGTCGGGGAATGACCCGATCCCCCCTGCGTGCTATCGATCC
TACTACCGCAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACCCCTTAT
Found at i:12591040 original size:26 final size:26
Alignment explanation
Indices: 12591001--12591051 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12590991 GATCCGATCA
12591001 TAGACTAGGAATGAACTCGGTATGCT
1 TAGACTAGGAATGAACTCGGTATGCT
* *
12591027 TAGACTAGGGATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCGGTATGC
12591052 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCGGTATGCT
Found at i:12591404 original size:26 final size:26
Alignment explanation
Indices: 12591366--12591418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12591356 CTGGTTCGAT
12591366 CTTAGACTGAGAATGAACTCCGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
12591392 CTTAGACAT-AGAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGCATG
12591418 C
1 C
12591419 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:12591895 original size:26 final size:26
Alignment explanation
Indices: 12591866--12591918 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12591856 CCGGTCTGAT
*
12591866 CTTAGACTG-GGAATGAGCTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
12591892 CTTAGACTGAGGGTGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
12591918 C
1 C
12591919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:12592630 original size:26 final size:26
Alignment explanation
Indices: 12592592--12592644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12592582 GGCTCAAAAT
12592592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12592618 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12592644 C
1 C
12592645 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12592922 original size:159 final size:155
Alignment explanation
Indices: 12592618--12593116 Score: 360
Period size: 159 Copynumber: 3.1 Consensus size: 155
12592608 ACTCCGTATG
* * * * * * *
12592618 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAA-CGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGGA-CATGCGGACGCTAAG
* ** * * * * * *
12592682 TCGGTCAGAGAGGCAGAATGCGCAAG-TCGGGGATC-AGCCCGGTCCTACC-CTGCATGCTGTTG
64 CCGACCAAAGAGGCAGAATGCACAAGCT-GGGGATCGA-CCCGATCC--CCTCTGCGTGCTATCG
* * **
12592744 ATCCTACTACCGTAACCCTCACTCTAGTTTGAT
125 ATCCCACTGCCACAACCCTCA-TCT-GTTTGAT
* * * * * * *
12592777 CTTAGACTGGAAATAAACTCCGTATGCATAAGTCAACCCATGAAAT-GAGCGTGTGGGCGCTGAG
1 CTTAGACTGG-AATGAACTCCGTATGCATAAGCCAACCCACGAAATGGA-CATGCGGACGCTAAG
* * * *
12592841 CCGACTAAAGAGGCATAATGCACAAGTTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTC
64 CCGACCAAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGAT-CCCCTCTGCGTGCTATCGATC
* * **
12592906 CCACTGCCACAACCCTCGATCTGGCTGGGG
128 CCACTGCCACAACCCTC-ATCT-GTTTGAT
* * * *
12592936 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACATGCGGATGCTAAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGGACATGCGGACGCTAAGC
* * ** * * *
12593001 CGACCGAAGAGGTAGAATGCGTAAGCTGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCCT
65 CGACCAAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCTCTGCGTGCTATCGATCCC
** *
12593066 ACTGCTGCAACCCTCAATCTGATCTGAT
130 ACTGCCACAACCCTC-ATCTG-TTTGAT
*
12593094 CTTACACTGGGAATGAACTCCGT
1 CTTAGACT-GGAATGAACTCCGT
12593117 TTGCTTAAAC
Statistics
Matches: 268, Mismatches: 61, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 62 0.23
159 194 0.72
160 10 0.04
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGGACATGCGGACGCTAAGCC
GACCAAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCTCTGCGTGCTATCGATCCCA
CTGCCACAACCCTCATCTGTTTGAT
Found at i:12593518 original size:342 final size:343
Alignment explanation
Indices: 12592777--12595495 Score: 1911
Period size: 342 Copynumber: 7.8 Consensus size: 343
12592767 CTAGTTTGAT
** * * * * *
12592777 CTTAGACTGGAAATAAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
** * ** * *
12592842 CGACTAAAGAGGCATAATGCACAAGTTGGGGATC-GACCCGATCCCCCTCTGCGTGCTATCGGTC
66 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCTATGCGTGCTGTCGGTC
* *
12592906 CCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * * * *
12592971 ACCCACGAAATGGACATGCGGA-TGCTAAGTCGACCGAAGAGGTAGAATGCGTAAGCTGGGGATC
195 ACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * * * * *
12593035 GACCCGGTCCCCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCAAT-CTGATCTGATCTTAC
260 G-GCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTTC-AATCTTAG
*
12593099 ACTGGGAATGAACTCCGTTTG
323 ACTGGGAATGAACTCCGTATG
* * * ** * * *
12593120 CTTAAACTGGGGATGAACTCTGTCTGCCTAAGTCAACCCAAAAAATGTGTGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * * *
12593185 TGGCTGGAGAAGCATAACGCGCAAGCCAGGGATTAGCCCGATCCCCC-ATGCGTGCTG-CAGGTC
66 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTC-GGTC
* * * * **
12593248 TCGCTGCCACAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGTA
130 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
12593313 ACCCACGAAACGGGCGTGCGGA-CGCTCAGCTGGCTGGAGAGGTAGAATGCGTAAGCCAGGGATC
195 ACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* *
12593377 GGCTCAGTCCCCCCTGCGTTCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTTCAATCTTAGA
260 GGC-CGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTTCAATCTTAGA
* * * *
12593442 ATAGGAATGAACTCTGGATG
324 CTGGGAATGAACTCCGTATG
* *
12593462 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * ** * * * ** *
12593527 CAACCGAAGAGGCATAATGCACAAGCCAAGGATCAGCTCGGTCCTCCGCTGCGTGCTGTCAGTCC
66 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTCGGTCC
* *
12593592 CGTTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
12593657 CCCACAAAACGGGCGTGC-GAGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCATGCTGGGGATCG
196 CCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * * * * * * *
12593721 GCCCGATCCCTCCTGCGTGCT-ACCATTCCTCCT-AT-CAAACCCTCGGTCCGATCCAATCTTAG
261 G-CCGGTCCCCCCTGCGTGCTGTCGA-TCCTGCTGCTGC-AACCCTCAGTCCGGTTCAATCTTAG
* *
12593783 ATTGAGAATGAACTCCGTATG
323 ACTGGGAATGAACTCCGTATG
* * * * * *
12593804 CTTAGACTGGGG-TGAACTCTGTATGCCTAAGTCAACCTACAAAATGAGCGTGTGGGAGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * ** * *
12593868 CGACTGGAGAAGCATAATGCGTAAGTCGGGGATCAGCTTG-GCCCCTCGT-TGTGTGCTGTCGGT
66 CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCC-C-TATGCGTGCTGTCGGT
* * * * * *
12593931 CCCGCTACGACAACCCTCGATCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
12593996 AACCCACGAAACGAGCGTGC-GAGCACTCAGCCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGAT
194 AACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * *
12594060 CGACCTGGTCCCCCTTTGCGTGCTGTCGATCCTGCTGCCTGTCCTGCTACCACAACCCTCGGTCT
259 CGGCC-GGTCCCCC-CTGCGTGCTGTCGAT-C--CTG-CTG--CTG------CAACCCTCAGTCC
** * * * *
12594125 GGACCTATCATAGATTGGGAATGAACTTCGTATG
310 GGTTCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
12594159 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
** * * * ** * * * *
12594223 CCGGTTGGAGCGGCAGAATGCGTAAGTTGGGGATCGGCCCGATCCCCCTAT--GTGCTATTGATC
65 CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTCGGTC
** * * ** * *
12594286 TTGCTACCGCAACCCTCGGT-TCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCGTAAG
130 CCGCTGCCACAACCCTCGGTCT-GG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
* * * * * *
12594348 CCAACCCACAAAACGGGCAT-CCGAGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGG
192 CCAACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
* * * * * ** *
12594412 ATAGGTCTGGTCCCCCCTGCGTGCTGTCGATCTTACTGTTGCAA-CCTTTGATCCAG-TCTAATC
257 ATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAG-TCCGGTTC-AATC
**
12594475 TTAGACTGGGAATGAACTTTGTATG
319 TTAGACTGGGAATGAACTCCGTATG
*
12594500 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGTGGGTGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGTGGGCGCTCAG
* * * * * *
12594565 TCGACCGGAGAGGCATAAGGCGTAAGCCGAGGATCAGCCC-AGTCCCCC-ACTGCGTGCTGTCGA
65 CCGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCCTA-TGCGTGCTGTCGG
* * *
12594628 TCTCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGC
128 TCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * * *
12594693 CTACCCATGAAACAGGCGTGTGG-GCGCTCAGCCGGTCAGAGAGGCAGAATGCGCAGGCTGGGGA
193 CAACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * * * * ** **
12594757 TTGGCCCGGTCTCCCTTACGTGCTATCGATCCTGCTG-TCGCAGCCCTC-GATCTAGTTTGATCT
258 TCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCT-GCAACCCTCAG-TCCGGTTCAATCT
* * *
12594820 GAGACTGGGAATGAATTCCATATG
320 TAGACTGGGAATGAACTCCGTATG
* * *
12594844 CTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAACTAGCGTGCT-GGCGTTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-TGGGCGCTCAG
* * ** * *
12594908 CCGGCAGGAGAGGCCTACCGGATAGGCTTAATGCGCAAATCGGGGATCAGTCC-AGTCCCCCTCT
65 -C--C----GA---CT---GGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCCTAT
* * * * * *
12594972 GTGTTCTGTCGATCCCACTGTCTATCTTGCTGCCACAACCCACGGTCTGACTGGGGCTTAGTCAT
116 GCGTGCTGTCG--------GTC---C-CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT
* * * * * * * * * * *
12595037 GGAATGAACTCCGTATACCTATGCCTACCCACAAAATGAGCGTGC-GAGCACTCAGTCGACCGAA
169 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGA
* * * * * * *
12595101 GAGGCAGAATGCACAAGCCAGGGAAT-GGCCCGATCCTCCCTGTGTGCTGTCGATCCTACTGCCG
234 GAGGCAGAATGCGCAAGCC-GGGGATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTG
* * * * * *
12595165 CAACCCTCGGTCTGG-TCTGATCTTAGATTGGGAATGAACCCCATATG
297 CAACCCTCAGTCCGGTTC-AATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * **
12595212 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACCCTCAAAACGAGCATACGGGCGCTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * * * * * * *
12595276 CC-AATCAGAGAGGTAGAATGCACAAGCTGGGGATC-GACCTGAT-TCCCTCTGCGTGCTATCGA
65 CCGACT-GGAGAGGCATAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCTATGCGTGCTGTCGG
** * * * * ** *
12595338 TCCTC-CTATCGCAACCCTTGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTA
128 TCC-CGCTGCCACAACCCTCGGTCTG-GCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
* * * * * * * * * * * * *
12595400 AGTCAACCTACGAAACGAGTGTGTGG-GTGCTCCGTCGGTCGGAGAGGCATAATGCGTAAGTCGA
190 AGCCAACCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGG
** *
12595464 GGATCAACCTGGTCCCCTTCTGCGTGCTGTCG
255 GGATCGGCC-GGTCCCC-CCTGCGTGCTGTCG
12595496 GTCCCACTGC
Statistics
Matches: 1863, Mismatches: 418, Indels: 190
0.75 0.17 0.08
Matches are distributed among these distances:
340 11 0.01
341 288 0.15
342 480 0.26
343 274 0.15
344 211 0.11
345 9 0.00
346 5 0.00
347 2 0.00
349 4 0.00
350 3 0.00
352 1 0.00
353 17 0.01
354 132 0.07
355 75 0.04
356 123 0.07
357 5 0.00
360 1 0.00
364 2 0.00
365 1 0.00
367 3 0.00
368 209 0.11
369 7 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGACTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTCGGTCC
CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
GCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGGTTCAATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:12594088 original size:685 final size:675
Alignment explanation
Indices: 12592777--12594910 Score: 2126
Period size: 685 Copynumber: 3.1 Consensus size: 675
12592767 CTAGTTTGAT
* * * * * *
12592777 CTTAGACTGGAAATAAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* *
12592842 CGACTAAAGAGGCATAATGCACAAGTTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCC
66 CGACTGAAGAGGCATAATGCACAAGTTGGGGATCG-CCCGAT-CCCC-CTGCGTGCTATCAGTCC
*
12592907 CACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCACAACCCTCG-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * *
12592972 CCCACGAAATGGACATGCG-GATGCTAAGTCGACCGAAGAGGTAGAATGCGTAAGCTGGGGATCG
192 CCCACAAAACGGGCATGCGAG-CGCTCAGCCGACCG-AGAGGCAGAATGCGCAAGCTGGGGATCG
* * * * * *
12593036 ACCCGGTCCCCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCAATCTGATCTGATCTTACAC
255 GCCCGGTCCCC-CTGCGTGCTGTCGATCCTACTGATGCAACCCTCGATCCGATCTAATCTTAGAC
* * * *
12593101 TGGGAATGAACTCCGTTTGCTTAAACTGGGGATGAACTCTGTCTGCCTAAGTCAACCCAAAAAAT
319 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAAT
* * * * * * * *
12593166 GTGTGTGTGGGCGCTCAG-CTGGCTGGAGAAGCATAACGCGCAAGCCAGGGATTAGCCCGATCCC
384 GAGCGTGTGGGAGCTCAGTC-GACTGGAGAAGCATAACGCGTAAGCCGGGGATCAGCCAG-TCCC
*
12593230 CCATGCGTGCTG-CAGGTCTCGCTGCCACAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
447 CCATGCGTGCTGTC-GGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
** * *
12593294 ACTCCCTATGCCTAAGGTAACCCACGAAACGGGCGTGCGGACGCTCAGCTGG-CTGGAGAGGTAG
511 ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGGTC-GGAGAGGTAG
* * * * * *
12593358 AATGCGTAAGCCAGGGATCGGCTCAGTCCCCCCTGCGTTCTGTCGATCCTGCTGCTGCAACCCTC
574 AATGCGCAAGCCGGGGATCGCCT-GGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTC
* * *
12593423 AGTCCGGTTCAATCTTAGAATAGGAATGAACTCTGGATG
638 -GTCTGGTTCAATCTTAGAATGGGAATGAACTCTGTATG
* * *
12593462 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * **** * * *
12593527 CAACCGAAGAGGCATAATGCACAAGCCAAGGATCAGCTCGGTCCTCCGCTGCGTGCTGTCAGTCC
66 CGACTGAAGAGGCATAATGCACAAGTTGGGGATC-GCCCGATCC-CC-CTGCGTGCTATCAGTCC
*
12593592 CGTTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCACAACCCTC-GTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
12593657 CCCACAAAACGGGCGTGCGAGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCATGCTGGGGATCGG
192 CCCACAAAACGGGCATGCGAGCGCTCAGCCGACC-GAGAGGCAGAATGCGCAAGCTGGGGATCGG
* * * * * *
12593722 CCCGATCCCTCCTGCGTGCT-ACCATTCCTCCT-AT-CAAACCCTCGGTCCGATCCAATCTTAGA
256 CCCGGTCCC-CCTGCGTGCTGTCGA-TCCTACTGATGC-AACCCTCGATCCGATCTAATCTTAGA
* * *
12593784 TTGAGAATGAACTCCGTATGCTTAGACTGGGG-TGAACTCTGTATGCCTAAGTCAACCTACAAAA
318 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAA
* * ** *
12593848 TGAGCGTGTGGGAGCTCAGTCGACTGGAGAAGCATAATGCGTAAGTCGGGGATCAGCTTGGCCCC
383 TGAGCGTGTGGGAGCTCAGTCGACTGGAGAAGCATAACGCGTAAGCCGGGGATCAGCCAGTCCCC
* * * * * * *
12593913 TCGTTGTGTGCTGTCGGTCCCGCTACGACAACCCTCGATCCGACTGGGGCTTAGACTTGGAATGA
448 -C-ATGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
*
12593978 ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGGTCGGAGAGGTAGA
511 ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGTCGGAGAGGTAGA
*
12594043 ATGCGCAAGTCGGGGATCGACCTGGTCCCCCTTTGCGTGCTGTCGATCCTGCTGCCTGTCCTGCT
575 ATGCGCAAGCCGGGGATCG-CCTGGTCCCCC-TTGCGTGCTGTCGAT-C--CTG-CTG--CTG--
** * * *
12594108 ACCACAACCCTCGGTCTGGACCTATCATAGATTGGGAATGAACT-TCGTATG
630 ----CAACCCTC-GTCTGGTTCAATCTTAGAATGGGAATGAACTCT-GTATG
* * *
12594159 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
** * * * ** ** * *
12594223 CCGGTTGGAGCGGCAGAATGCGTAAGTTGGGGATCGGCCCGATCCCCCTATGTGCTAT-TGATCT
65 CCGACTGAAGAGGCATAATGCACAAGTTGGGGATC-GCCCGATCCCCCTGCGTGCTATCAG-TCC
* * * ** * *
12594287 TGCTACCGCAACCCTCGGT-TCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGC
128 CGCTGCCACAACCCTC-GTCT-GG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
* * **
12594349 CAACCCACAAAACGGGCATCCGAGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGAT
189 CAACCCACAAAACGGGCATGCGAGCGCTCAGCCGACC-GAGAGGCAGAATGCGCAAGCTGGGGAT
* * * * * * *
12594414 AGGTCTGGTCCCCCCTGCGTGCTGTCGATCTTACTGTTGCAACCTTTGATCC-AGTCTAATCTTA
253 CGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTACTGATGCAACCCTCGATCCGA-TCTAATCTTA
** *
12594478 GACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
316 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAC-A
* * * * * *
12594543 AAACGAGCGTGTGGGTGCTCAGTCGACCGGAGAGGCATAAGGCGTAAGCCGAGGATCAGCCCAGT
380 AAATGAGCGTGTGGGAGCTCAGTCGACTGGAGAAGCATAACGCGTAAGCCGGGGATCAG-CCAGT
* ** *
12594608 CCCCCACTGCGTGCTGTCGATCTCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACATGGAA
444 CCCCCA-TGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAA
* * * * *
12594673 TGAACCCCCTATGCCTAAGCCTACCCATGAAAC-AGGCGTGTGGGCGCTCAGCCGGTCAGAGAGG
508 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTG-CGGCGCTCAGCCGGTCGGAGAGG
* * * * * * * * *
12594737 CAGAATGCGCAGGCTGGGGATTGGCCCGGTCTCCCTTACGTGCTATCGATCCTGCTG-TCGCAGC
571 TAGAATGCGCAAGCCGGGGA-TCGCCTGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCT-GCAAC
* ** * * * **
12594801 CCTCGATCTAGTTTGATCTGAGACTGGGAATGAATTCCATATG
634 CCTCG-TCTGGTTCAATCTTAGAATGGGAATGAACTCTGTATG
* * * *
12594844 CTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAACTAGCGTGCT-GGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-TGGGCGCTCAG
12594908 CCG
65 CCG
12594911 GCAGGAGAGG
Statistics
Matches: 1188, Mismatches: 210, Indels: 102
0.79 0.14 0.07
Matches are distributed among these distances:
682 4 0.00
683 78 0.07
684 187 0.16
685 346 0.29
686 6 0.01
688 3 0.00
689 3 0.00
690 1 0.00
691 4 0.00
693 3 0.00
694 6 0.01
695 134 0.11
696 60 0.05
697 162 0.14
698 182 0.15
699 9 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (675 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGACTGAAGAGGCATAATGCACAAGTTGGGGATCGCCCGATCCCCCTGCGTGCTATCAGTCCCGC
TGCCACAACCCTCGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CAAAACGGGCATGCGAGCGCTCAGCCGACCGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGG
TCCCCCTGCGTGCTGTCGATCCTACTGATGCAACCCTCGATCCGATCTAATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTG
TGGGAGCTCAGTCGACTGGAGAAGCATAACGCGTAAGCCGGGGATCAGCCAGTCCCCCATGCGTG
CTGTCGGTCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCC
GGGGATCGCCTGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGTCTGGTTCAATC
TTAGAATGGGAATGAACTCTGTATG
Found at i:12594524 original size:26 final size:26
Alignment explanation
Indices: 12594474--12594526 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12594464 CCAGTCTAAT
**
12594474 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12594500 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12594526 C
1 C
12594527 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12595627 original size:159 final size:158
Alignment explanation
Indices: 12595211--12595627 Score: 355
Period size: 159 Copynumber: 2.6 Consensus size: 158
12595201 AACCCCATAT
* * * * * * *
12595211 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACCCT-CAAAACGAGCATACGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAA-CCTACGAAACGAGCGTGCGGGTGCTC
* * * * * * * *
12595274 AGCCAATCAGAGAGGTAGAATGCACAAGCTGGGGATCGACCTGATTCCCTCTGCGTGCTATCGAT
64 AACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCTGATCCCCTCTGCGTGCTATCGAT
* *
12595339 CCTCCTATCGCAACCCTTGGTCCGATCTGA
129 CCTCCTACCACAACCCTTGGTCCGATCTGA
* * * * * **
12595369 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGTGTGGGTGCTCCG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAA
* ** * * * * * *
12595434 TCGGTCGGAGAGGCATAATGCGTAAG-TCGAGGATCAACCTGGTCCCCTTCTGCGTGCTGTCGGT
66 CCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAACCTGATCCCC-TCTGCGTGCTATCGAT
* * *
12595498 CC-CACTGCCACAACCCTTGGTTCGA-CTGGG
129 CCTC-CTACCACAACCCTTGGTCCGATCT-GA
* *
12595528 GCTTAGACAT-GGAATGAACTCCCTATGTCTAAGCCAACAC-ATGAAACG-GACGTGCGGGTGCT
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAAC-CTACGAAACGAG-CGTGCGGGTGCT
12595590 CAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC
63 CAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC
12595628 GGTTCGATCC
Statistics
Matches: 205, Mismatches: 44, Indels: 19
0.76 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 86 0.42
159 111 0.54
160 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCTGATCCCCTCTGCGTGCTATCGATCC
TCCTACCACAACCCTTGGTCCGATCTGA
Found at i:12595739 original size:26 final size:26
Alignment explanation
Indices: 12595687--12595739 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12595677 CTGGTTCGAT
*
12595687 CTTAAACTGGGAATGAACTCTGGATG
1 CTTAAACTGGGAATGAACTCCGGATG
* * *
12595713 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGGATG
12595739 C
1 C
12595740 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGGATG
Found at i:12595878 original size:343 final size:342
Alignment explanation
Indices: 12595370--12596349 Score: 1155
Period size: 343 Copynumber: 2.9 Consensus size: 342
12595360 CCGATCTGAT
* * *
12595370 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGTGTGTGGGTGCTCCGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGTGCTCAGT
* * * **
12595435 CGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAAC-CTGGTCCCCTTCTGCGTGCTGTCGGTC
66 CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTC-GGTCCCCCACTGCGTGCTGTCGGTC
* * *
12595499 CCACTGCCACAACCCTTGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCA
130 CCACTGCCACAACCC-TAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
*
12595564 ACACATGAAACGGACGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
194 ACCCATGAAACGGACGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
* * * * *
12595629 GTTCGATCCCCCCTGCGTGCTGTCGATCTTGCTGCT-GCAACCTTCAGTCTGGT-TCGATCTTAA
259 G-CCGATCCCCCCTGCGTGCTGTCGATCTTACTGCTCGCAACCCTCAATCCGGTCT-GATCTTAA
* *
12595692 ACTGGGAATGAACTCTGGATG
322 ACTGGGAATGAACTCCGGATA
* * ** *
12595713 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGTGCTCAGT
* * ** * *
12595778 CGATTGGAAAGGCATAATGCACAAGCCGAGGATCAGCTCGGTCCCCCACTGCATGCTGTCGATCC
66 CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCACTGCGTGCTGTCGGTCC
** **
12595843 TGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCT-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * *
12595908 CCCAAAAAATGGGCGTGCGAGAGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG
195 CCCATGAAACGGACGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG
* * * * * *
12595973 CCCAGTCCCTCCTGCGTGCTG-CCATTCCTACT-ATCGCAACCCTCAATCCGGTCTGATCTTAGA
260 CCGA-TCCCCCCTGCGTGCTGTCGA-TCTTACTGCTCGCAACCCTCAATCCGGTCTGATCTTAAA
* *
12596036 CTGGGATTGAACTCCGTATA
323 CTGGGAATGAACTCCGGATA
* *
12596056 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAAGGAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGTGCTCAGT
* * * * * * * * *
12596121 TGACCGCAGAGGCATAATGTGTAAGCC-AGGGATCAGCTCAGTCCCTCACTGTGTGCCGCCGGTC
66 CGATCGGAGAGGCATAATGCGTAAGCCGA-GGATCAGCTCGGTCCCCCACTGCGTGCTGTCGGTC
* * *
12596185 CCACTACCACAACCCTAGGTCCGACTGGGGCTTAGACTTGGAATGAACTTCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTA-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** ** * ** * *
12596250 ACCCATGAAAC-GAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAAAATTTGCAAGCCGAGGATC
194 ACCCATGAAACGGA-CGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC
* *
12596314 GACCCGGTCCCCCCTGCGTGCTGTCGATCTTACTGC
258 G-GCCGATCCCCCCTGCGTGCTGTCGATCTTACTGC
12596350 CTGTCCTGCT
Statistics
Matches: 527, Mismatches: 98, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
342 9 0.02
343 512 0.97
344 6 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGTGCTCAGT
CGATCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCACTGCGTGCTGTCGGTCC
CACTGCCACAACCCTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGACGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGC
CGATCCCCCCTGCGTGCTGTCGATCTTACTGCTCGCAACCCTCAATCCGGTCTGATCTTAAACTG
GGAATGAACTCCGGATA
Found at i:12596059 original size:26 final size:26
Alignment explanation
Indices: 12596030--12596080 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12596020 CCGGTCTGAT
12596030 CTTAGACT-GGGATTGAACTCCGTATA
1 CTTAGACTGGGGA-TGAACTCCGTATA
12596056 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
12596081 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATA
Found at i:12596927 original size:26 final size:26
Alignment explanation
Indices: 12596885--12596935 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12596875 CCGATCCAAT
* *
12596885 CTTAGACTGAGAGTGAACTCTGTATA
1 CTTAGACTGAGAATGAACTCCGTATA
*
12596911 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
12596936 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATA
Found at i:12597089 original size:344 final size:342
Alignment explanation
Indices: 12596568--12597306 Score: 813
Period size: 344 Copynumber: 2.2 Consensus size: 342
12596558 CCGGTCCGAT
* * * *
12596568 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACACACAAAACAAGCGTGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAGT
* * * **
12596633 CGGCCGAAAAGGCATAATGCGCAAGCCAGGAATCAGCCTAGTCCCCCTCTGCGTGCTGTCAATCC
66 CGACCGAAAAGGCATAATACGCAAGCCAGGAATCAGCCGAGTCCCCCTCTGCGTGCTACCAATCC
* * * *
12596698 CGCTGCCACAACCCTTGATCTGGCTAGGGCTTAGAGATGGTATGAACTCCCTACGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAA
* * *
12596763 CCCACGAAACAAG-TGTCCGGGCACTCAGCCGATCAGAGAGGTAGAATGAGCAAGCCAGGGATCG
196 CCCACGAAACAAGATGT--GGACACTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCG
* * * *
12596827 GCCTGGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCGTAACCTTCAGTCCGA-TCCAATCTTAGA
259 GCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCAGT-CGAGTCCAATCTTAGA
* * *
12596891 CTGAGAGTGAACTCTGTATA
323 CTGAGAATGAACTCCGTACA
* ** *
12596911 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAATGAGCGTGTGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAACAAGCGTGCGGGCACTCAG
* * * * * * *
12596976 TCGATCGGAGAGGCATAATACGTAAGCCGAGG-ATTAGCCCGA-T-CCTCTGCTGCGTGCTACCG
65 TCGACCGAAAAGGCATAATACGCAAGCC-AGGAATCAG-CCGAGTCCCCCT-CTGCGTGCTACCA
* * *
12597038 ATCCCGCTTCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
127 ATCCCGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAG
* * * * * * * **
12597103 CCTACCCATGAAACAGGCATGTGGACGCTCAGCCGACCGGAGAGGCAGAATGCGCAGGCTGGGGA
192 CCAACCCACGAAACAAG-ATGTGGACACTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGA
* * * * * * * * **
12597168 TTGGCCCGGTCCCCCTTGCGTGCTGTTGTTCCTACTGTCGTAGCCCTCGGTCTAGTCTGATCTTA
256 TCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCGAGTCCAATCTTA
* *
12597233 GACTGGGAATGAACTCCGTACG
321 GACTGAGAATGAACTCCGTACA
* * * *
12597255 CTTAGACTGGGGATAAACTCCGTATACCTAAGTCAACCCACAAAACGAGCGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGT
12597307 ATTGGCACCC
Statistics
Matches: 326, Mismatches: 63, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
343 54 0.17
344 263 0.81
345 6 0.02
346 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTCAGT
CGACCGAAAAGGCATAATACGCAAGCCAGGAATCAGCCGAGTCCCCCTCTGCGTGCTACCAATCC
CGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAA
CCCACGAAACAAGATGTGGACACTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGGC
CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCAGTCGAGTCCAATCTTAGACTG
AGAATGAACTCCGTACA
Found at i:12597265 original size:26 final size:26
Alignment explanation
Indices: 12597229--12597278 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12597219 CTAGTCTGAT
*
12597229 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
*
12597255 CTTAGACTGGGGATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
12597279 TACCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:12597795 original size:184 final size:185
Alignment explanation
Indices: 12597438--12597808 Score: 500
Period size: 185 Copynumber: 2.0 Consensus size: 185
12597428 TCTGACTGGG
* * *
12597438 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCATACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
12597503 TCGGCCAAGGAGGCAGAATGCGCAAGTCGGGGAATGGCCCGATCCCCCCCTGTGTGCTGTCGATC
66 CCAGCCAAGGAGGCAGAATGCACAAGTCGGGGAATGACCCGATCCCCCCCTGCGTGCTGTCGATC
*
12597568 CTGCTACCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACCCCATAT
131 CTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACCCCATAT
** * *
12597623 GCTTAGACATGGAATAAACTCTGTATGCCTAAG-ATAACCCTCGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCAT-ACCCACGAAACGAGCGTACGGGCACTCA
** * *
12597687 GCCAATC-GGAGAGGCAGAATGCACAAGTTGGGG-ATCGACCCGAT-CCCCCCTGCGTGCTGTCG
65 GCCAGCCAAG-GAGGCAGAATGCACAAGTCGGGGAAT-GACCCGATCCCCCCCTGCGTGCTGTCG
* *
12597749 ATCCTGCTACCGCAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTAT
128 ATCCTGCTACCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACCCCATAT
12597807 GC
1 GC
12597809 CTAAGTCAAC
Statistics
Matches: 163, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
183 1 0.01
184 76 0.47
185 86 0.53
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATAAACTCCATATGCCTAAGCATACCCACGAAACGAGCGTACGGGCACTCAG
CCAGCCAAGGAGGCAGAATGCACAAGTCGGGGAATGACCCGATCCCCCCCTGCGTGCTGTCGATC
CTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACCCCATAT
Found at i:12598144 original size:158 final size:158
Alignment explanation
Indices: 12597624--12598441 Score: 719
Period size: 158 Copynumber: 5.2 Consensus size: 158
12597614 ACCCCATATG
* *
12597624 CTTAGACATGGAATAAACTCTGTATGCCTAAGAT-AACCC-TCGAAACGAGCGTGCGGGCACTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-TCAACCCAT-GAAACGAGCGTGCGGGCACTCA
* ** * *
12597687 GCCA-ATCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCT-GTCGA
64 GCCAGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACT-GA
* * * * *
12597750 TCCTGCTACCGCAACCCTCGGTCCGATCTGAT
127 TCCTACTGCCGCAACCTTCGGTCCGGTCGGAT
* * *
12597782 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCACTCCG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
12597846 TCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATC-AGCCTGGTCCCCCTCTGCGTGCTA-TCAG
65 CCAGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGCTACTGA-
* * * * * **
12597909 TCCCACTGCCACAACCTTTGGTTC-GACTGGGG
127 TCCTACTGCCGCAACCTTCGGTCCGGTC-GGAT
* * * * *
12597941 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * **
12598006 TAGACGGAGAGCCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGTATGCTACTGATCCT
66 CAGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACTGATCCT
* * * **
12598071 ACTGTCGCAACCCTCGGTCTGGTCCAAT
131 ACTGCCGCAACCTTCGGTCCGGTCGGAT
* * *
12598099 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
12598163 CCGGTCGGAGAGGCATAATGTGCAAGTCGGGGATCGGCCC-GTCCCCCTCTGTGTGCTGC-CAGT
65 CCAGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACTGA-T
* ** * * * *
12598226 CCCACAACCACAACCTTCGGTCCAGTAGGAG
128 CCTACTGCCGCAACCTTCGGTCCGGTCGGAT
* * * * * * *
12598257 CTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * *
12598322 C-GATCAGAGAGGTAGAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATC
66 CAGA-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTACTGATC
* *
12598385 CTATTGCCGCAACCTTCGGTCCGGTCTGAT
129 CTACTGCCGCAACCTTCGGTCCGGTCGGAT
12598415 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
12598442 TTAGACTAGG
Statistics
Matches: 516, Mismatches: 122, Indels: 44
0.76 0.18 0.06
Matches are distributed among these distances:
157 14 0.03
158 365 0.71
159 135 0.26
160 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CAGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACTGATCCT
ACTGCCGCAACCTTCGGTCCGGTCGGAT
Found at i:12598364 original size:316 final size:317
Alignment explanation
Indices: 12597623--12598441 Score: 1038
Period size: 317 Copynumber: 2.6 Consensus size: 317
12597613 AACCCCATAT
* * ** * *
12597623 GCTTAGACATGGAATAAACTCTGTATGCCTAAGATAACCC-TCGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACGGGCGTGCGGGCGCTCA
* * * * *
12597687 GCCAATCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCT-GTCGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTACT-GAT
* * *
12597751 CCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
129 CCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
12597816 AACCCATGAAACGAGTGTACGGGCACTCCGTCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATC
194 AACCCATGAAACGAGCGTACGGACACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATC
* * ** * * *
12597881 AGCCTGGTCCCCCTCTGCGTGCTATCAGTCCCACTGCCACAACCTTTGGTTCGACTGGG
259 AGCCTCGTCCCCCTCTGCGTGCTACCAGTCCCACAACCACAACCTTCGGTTCCACTGGA
* *
12597940 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * ** **
12598005 CTAGA-CGGAGAGCCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGTATGCTACTGATC
66 C-CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTACTGATC
* * ** *
12598069 CTACTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCA
130 CTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
12598134 ACCCATGAAACGAGCGTGCGGACACTGAGCCGGTCGGAGAGGCATAATGTGCAAGTCGGGGATCG
195 ACCCATGAAACGAGCGTACGGACACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCA
* * *
12598199 GCC-CGTCCCCCTCTGTGTGCTGCCAGTCCCACAACCACAACCTTCGG-TCCAGTAGGA
260 GCCTCGTCCCCCTCTGCGTGCTACCAGTCCCACAACCACAACCTTCGGTTCCACT-GGA
* * * *
12598256 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * *
12598321 CCGATCAGAGAGGTAGAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGGTCCCCCCTGCGTGCTACTGATC
* *
12598385 CTATTGCCGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
12598442 TTAGACTAGG
Statistics
Matches: 426, Mismatches: 70, Indels: 13
0.84 0.14 0.03
Matches are distributed among these distances:
315 7 0.02
316 198 0.46
317 219 0.51
318 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTACTGATCC
TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTACGGACACTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAG
CCTCGTCCCCCTCTGCGTGCTACCAGTCCCACAACCACAACCTTCGGTTCCACTGGA
Found at i:12598444 original size:26 final size:26
Alignment explanation
Indices: 12598415--12598467 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12598405 CCGGTCTGAT
12598415 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
12598441 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12598467 C
1 C
12598468 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12599642 original size:158 final size:158
Alignment explanation
Indices: 12599293--12599751 Score: 512
Period size: 158 Copynumber: 2.9 Consensus size: 158
12599283 CTGGTCCGAT
* * * * * * *
12599293 CTTAGAC-TCGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGACGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
* * * * * * * *
12599357 CCGGTCGGAGAGGCATAATGCATAAGCCAGGGAT-AGGCCTGGTCCCCCTCTGCATGCTGCCGGT
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCA-GCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * **
12599421 CTCGCTGCAACAACCCTCGGTCCGGTTGGGG
128 CCCGCTGCCACAACCATCGGTCCGACTGGGG
* * * *
12599452 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
* * *
12599517 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCC
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
12599582 GCTGCCACAACCATCGGTCCGACTGGGG
131 GCTGCCACAACCATCGGTCCGACTGGGG
* * * *
12599610 CTTAGACATGGAATGAGCTCCCTATGCTTAAGCCAACCCGCGAAACGGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
* * * *
12599675 C-AGTCGGAGAGGCAGAATGCGTAAGCCGAGGATC-GACCCGATCCCCTCTGTGTGCTGTCGATC
66 CGA-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCCGGTCCCCCCTGCGTGCTGTCGATC
* *
12599738 CTGCTGTCACAACC
129 CCGCTGCCACAACC
12599752 CTCGATCTGA
Statistics
Matches: 253, Mismatches: 43, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.01
158 158 0.62
159 91 0.36
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCATCGGTCCGACTGGGG
Found at i:12599797 original size:158 final size:157
Alignment explanation
Indices: 12599254--12599784 Score: 489
Period size: 158 Copynumber: 3.4 Consensus size: 157
12599244 AGGGATCGTA
* * * * * *
12599254 CTGTCGATCCTGCAGCCACAACCTTCGGTCTGGTCCGATCTTAGAC-TCGGAATGAACTCCGTAT
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGAGCTTAGACAT-GGAATGAACTCCCTAT
* * * * * * * * * *
12599318 GCATAAGTCAACCCATGAAACGAGCGTACGGACGTTGAGCCGGTCGGAGAGGCATAATGCATAAG
65 GCTTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG-CAGTCGGAGAGGCAGAATGCGTAAG
* * * *
12599383 CC-AGGGATAGGCCTGGTCCCCCTCTGCATG
129 CCGA-GGATCGACCCGGT-CCCCTCTGCGTG
* * * * ** *
12599413 CTGCCGGT-CTCGCTGCAACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGTCGATCCT-GCTGCCACAACCCTCGGTCCGATCCGAGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
12599477 GCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAG
65 GCTTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCAG-TCGGAGAGGCAGAATGCGTAAG
* * *
12599542 CCGGGGATC-AGCCCGGTCCCCCCTACGTG
129 CCGAGGATCGA-CCCGGTCCCCTCTGCGTG
* * * * * *
12599571 CTATCGATCCCGCTGCCACAACCATCGGTCCGA-CTGGGGCTTAGACATGGAATGAGCTCCCTAT
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGATC-CGAGCTTAGACATGGAATGAACTCCCTAT
*
12599635 GCTTAAGCCAACCCGCGAAACGGGCGTACGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCGTAAG
65 GCTTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG-CAGTCGGAGAGGCAGAATGCGTAAG
* *
12599700 CCGAGGATCGACCCGATCCCCTCTGTGTG
129 CCGAGGATCGACCCGGTCCCCTCTGCGTG
* * * *
12599729 CTGTCGATCCTGCTGTCACAACCCTCGATCTGATCCGATCTTAGAC-TGAGAATGAA
1 CTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGAGCTTAGACATG-GAATGAA
12599785 ATTCGTATGC
Statistics
Matches: 298, Mismatches: 63, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 183 0.61
159 112 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGAGCTTAGACATGGAATGAACTCCCTATG
CTTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCAGTCGGAGAGGCAGAATGCGTAAGCC
GAGGATCGACCCGGTCCCCTCTGCGTG
Found at i:12601199 original size:159 final size:158
Alignment explanation
Indices: 12601028--12601322 Score: 365
Period size: 159 Copynumber: 1.9 Consensus size: 158
12601018 CCGGTCCAAT
* ** * * * * *
12601028 CTTAGACTTGGAATGAACTCTGTATGCATAAGTCAACCCAGAAAACAAGTGTACGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAAC
* * * *
12601093 CGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCTCGATCCCCCTCTACGTGCTACCGATCC
66 CGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACTCGATCCCCC-CTACGTGCTACCGATCC
12601158 TGCTGCCATAACCTTCGGTCTGGCTGGGG
130 TGCTGCCATAACCTTCGGTCTGGCTGGGG
* ** * *
12601187 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAAC
* * * * * **
12601252 CGACCGGAGAGGCAGAACGCGCAAGTCGGGGATCGACTCGGTCCCTCCTGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACTCGATCCCCCCTACGTGCTACCGATCCT
12601317 GCTGCC
131 GCTGCC
12601323 GCAACCATCA
Statistics
Matches: 112, Mismatches: 24, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
158 21 0.19
159 91 0.81
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAAC
CGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACTCGATCCCCCCTACGTGCTACCGATCCT
GCTGCCATAACCTTCGGTCTGGCTGGGG
Done.