Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19848060
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Warning! 113000 characters in sequence are not A, C, G, or T
File 61 of 138
Found at i:12601381 original size:26 final size:26
Alignment explanation
Indices: 12601345--12601397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12601335 CCGATCCGAT
12601345 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
12601371 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12601397 C
1 C
12601398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12601752 original size:26 final size:26
Alignment explanation
Indices: 12601714--12601766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12601704 CCAGACCGAT
12601714 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
12601740 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
12601766 C
1 C
12601767 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:12601827 original size:356 final size:363
Alignment explanation
Indices: 12601340--12602024 Score: 816
Period size: 356 Copynumber: 1.9 Consensus size: 363
12601330 TCAGTCCGAT
* * * * * *
12601340 CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
12601405 AACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCCGACCGAATAGGCATAATGCG
66 AACCCACGAAACAAGCATACGGGCGCTCAGCCGGCCGGAGAGG-CGA-C--A-AGG-ATAATGCG
* * * *
12601470 CAAGCTGGGGATC-AGCCCGGTCCCTCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTC
125 CAAGCTAGGGATCGA-CCCGGTCCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTC
** *
12601534 -CGACTGGGCCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTGC
189 TCGACT-AACCTTAGAC-TGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTAC
* * *
12601597 AGGCGCTCAGTCGACCGGGGAGGCAGAATGCGCAAGCTGGGGATCAGCTCAATCCCCCCCTGTGT
252 AGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCAATCCCCCCCTGCGT
12601662 GCTGTCGATCCTGCTGCTGGTCCTGGTGTCGTAACCCACGGTCCAGA
317 GCTGTCGATCCTGCTGCTGGTCCTGGTGTCGTAACCCACGGTCCAGA
12601709 CCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
1 CCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGC
* *
12601773 CAACCCACGAAACAAGCATACGGGTGCTCAGCTGGCCGGAGA-G-G-C-A-G-T-ATGCGCAAGC
65 CAACCCACGAAACAAGCATACGGGCGCTCAGCCGGCCGGAGAGGCGACAAGGATAATGCGCAAGC
* * ** * *
12601831 TAGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTACTGCAACCCTCGGTCTGGTCT
130 TAGGGATCGACCCGGTCCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTCGACT
* * * * * * *
12601896 AATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTG
195 AACCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTACAGGCGCTC
** * * ** *
12601961 AGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCG
260 AGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCAATCCCCCCCTGCGTGCTGTCG
12602025 GTCCCACTGC
Statistics
Matches: 269, Mismatches: 43, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
355 2 0.01
356 165 0.61
357 5 0.02
359 1 0.00
360 1 0.00
364 1 0.00
366 1 0.00
368 1 0.00
369 91 0.34
370 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (363 bp):
CCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACAAGCATACGGGCGCTCAGCCGGCCGGAGAGGCGACAAGGATAATGCGCAAGCT
AGGGATCGACCCGGTCCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTCGACTA
ACCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCCTACAGGCGCTCA
GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCAATCCCCCCCTGCGTGCTGTCGAT
CCTGCTGCTGGTCCTGGTGTCGTAACCCACGGTCCAGA
Found at i:12602041 original size:159 final size:159
Alignment explanation
Indices: 12601740--12602155 Score: 480
Period size: 159 Copynumber: 2.6 Consensus size: 159
12601730 ACTCCCTATG
* * *
12601740 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* **
12601804 CTGGCCGGAGAGGCAGT-ATGCGCAAGCTAGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGAT
66 C-GGTCGGAGAGGCA-TAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGAT
** ** ** *
12601868 CCTGCTACTGCAACCCTCGGTCTGGTCT-AAT
129 CCCACTACCACAACCCTCCATCCGGT-TGAAT
* * *
12601899 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
12601963 TCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTC
65 TCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATC
* **
12602028 CCACTGCCACAACCCTCCATCCGGTTGGGT
130 CCACTACCACAACCCTCCATCCGGTTGAAT
* * * *
12602058 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGTTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * *
12602123 CGATCGGAGAGGCAGAATGTGCAAGCCGAGGAT
66 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGAT
12602156 TGGCCCGATC
Statistics
Matches: 217, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
158 4 0.02
159 210 0.97
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATCC
CACTACCACAACCCTCCATCCGGTTGAAT
Found at i:12609114 original size:26 final size:26
Alignment explanation
Indices: 12609085--12609140 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
12609075 CCGGTCCGAT
12609085 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
* *
12609111 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12609137 CTTA
1 CTTA
12609141 AGTCAATCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12610760 original size:159 final size:159
Alignment explanation
Indices: 12610331--12610782 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 159
12610321 TGCCGGTCCT
*
12610331 GCTGCCACAACCCTC-AGTCCGACTGGGG-TTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
12610394 CCGATGAAACGAGCGTGCGGGAGCTCAG-TCGGTCGGAGAGGCAAAATGCGCAAGCCAAGGACCA
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCT-AGTCGGAGAAGCAAAATGCGCAAGCCGGGGACCG
* * *
12610458 ACCCGGTCCCCCCCTGTGTGCTGTCGATCCT
129 GCCCGGTCCCCCCCTGCGTGCTGTCGATCCC
** ** * * ** *
12610489 GCTATCGTAACCCTCGGTCCAATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCA
1 GCTGCCACAACCCTCGATCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
12610552 ACCCACGAAACGAGCGTGCGGGCGCTGAGC-CGATCAGAG-AGTCATAATGCACAAACCGGGGAT
64 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTAG-TCGGAGAAG-CAAAATGCGCAAGCCGGGGAC
12610615 CGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCC
127 CGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCC
* * *
12610648 GCTGCCACAACCCTCGATTCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
12610713 CCACGAAACGGGCTTGCGGGCGCTCAGCTAGTCGGAGAAGCAGAATGCGTAAGCCGGGGACCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCTAGTCGGAGAAGCAAAATGCGCAAGCCGGGGACCGGC
12610778 CCGGT
131 CCGGT
12610783 ACCTCCTACA
Statistics
Matches: 234, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
158 21 0.09
159 209 0.89
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCTAGTCGGAGAAGCAAAATGCGCAAGCCGGGGACCGGC
CCGGTCCCCCCCTGCGTGCTGTCGATCCC
Found at i:12611551 original size:158 final size:160
Alignment explanation
Indices: 12611271--12611560 Score: 356
Period size: 158 Copynumber: 1.8 Consensus size: 160
12611261 ATGAACTTTG
* * * * *
12611271 TATGCCTAAGTCAACCCACGAAACGATCGTCGGCGGTCGCTCAACCGGCTGGAGAGGCATAATAC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTCGGCGGTCGCTCAACCGACCGGAGAGGCAAAATAC
* * * *
12611336 GCAAGCCGAGGATCGGTCCGATCCCCTTCTACGTGCTACCGGTCCGCTGCCACAACCCTCAGTCC
66 ACAAGCCGAGGATCGGTCCGATCCCCTCCTACATGCTACCGATCCGCTGCCACAACCCTCAGTCC
12611401 AGCTGGGGCTTAGACATGGAATGAACTCCC
131 AGCTGGGGCTTAGACATGGAATGAACTCCC
* * * *
12611431 TATGCCTAAGCCTACCCACGAAACGAGCGT--GCGGGT-GCTCATCTGACCGGAGAGGCAAAATG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTCGGC-GGTCGCTCAACCGACCGGAGAGGCAAAATA
* ** * *
12611493 CACAAGCCGGGGATCGG-CTCGATCCCC-CCTACATGCTGTCGATCCTGCTGCCGCAACCCTCGG
65 CACAAGCCGAGGATCGGTC-CGATCCCCTCCTACATGCTACCGATCC-GCTGCCACAACCCTCAG
12611556 TCCAG
128 TCCAG
12611561 TCTGATCTTA
Statistics
Matches: 109, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
157 14 0.13
158 65 0.60
159 3 0.03
160 27 0.25
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.18
Consensus pattern (160 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTCGGCGGTCGCTCAACCGACCGGAGAGGCAAAATAC
ACAAGCCGAGGATCGGTCCGATCCCCTCCTACATGCTACCGATCCGCTGCCACAACCCTCAGTCC
AGCTGGGGCTTAGACATGGAATGAACTCCC
Found at i:12611603 original size:26 final size:26
Alignment explanation
Indices: 12611567--12611617 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12611557 CCAGTCTGAT
* *
12611567 CTTAGATTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
12611593 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12611618 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:12612645 original size:158 final size:158
Alignment explanation
Indices: 12612324--12612666 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
12612314 AACTCCGTAT
* * * *
12612324 GCTTAAACATGGAATGAACTCTGTATGCCTAAGCCAAACCACAAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCATGCGGGCGCTCAA
** * * * *
12612389 CGGTCGGAGAGGTAGAATGCACAAGCCAGGGATCGATCTGGTCCCACTCTACGTGCTGTCGATCC
66 CGGTCGGAGAGACAGAATGCACAAGCCAGGGATCAACCTGATCCCACCCTACGTGCTGTCGATCC
* *
12612454 CACTGCCACAACCCTCAGTCCGACTGGG
131 CACTACCACAACCCTCAGTCCGACTGGA
* * ** * * *
12612482 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCATGCGGGCGCTCAA
*
12612547 CTGGTCGGAGAGACAGAATGCACAAGTC-GAGGATCAACCTGATCCC-CCCTACGTGCTGTCGAT
66 C-GGTCGGAGAGACAGAATGCACAAGCCAG-GGATCAACCTGATCCCACCCTACGTGCTGTCGAT
** ** *
12612610 CTTACTACCGTAACCCTCAGTCTGATCT-GA
129 CCCACTACCACAACCCTCAGTCCGA-CTGGA
* *
12612640 TCTTAGA-TTGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
12612667 GTTAAACTGG
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 114 0.75
159 38 0.25
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAAACGAGCATGCGGGCGCTCAA
CGGTCGGAGAGACAGAATGCACAAGCCAGGGATCAACCTGATCCCACCCTACGTGCTGTCGATCC
CACTACCACAACCCTCAGTCCGACTGGA
Found at i:12613034 original size:26 final size:26
Alignment explanation
Indices: 12612996--12613048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12612986 CTAGTCTAAT
*
12612996 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12613022 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12613048 C
1 C
12613049 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12613243 original size:26 final size:26
Alignment explanation
Indices: 12613205--12613257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12613195 CCGGTCCGAT
12613205 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
12613231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
12613257 C
1 C
12613258 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:12613688 original size:158 final size:155
Alignment explanation
Indices: 12613230--12613729 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 155
12613220 AACACCGTAT
* * *
12613230 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *** *
12613295 CCGGCTGGAGAGGCAGAATGCACAAGTCGGGGATGACACGGTCCCCCATACATGCTACCGAT-CT
66 CCGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATGACCCGGTCCCCC-TGTGTGCTGCCGATCCT
* *
12613359 GCTGTCACAACCCTCGATCCATTTTGA
129 GCTGTCACAACCCTCGATCCATCTGGA
* * * * * * * * * *
12613386 TCTTAAAC-TGGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACAAGCGTACAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
12613450 GCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATTGACCCGGTCCCCTCTGTGTGCTGTCAATC
65 GCCG-GCGGAGAGGCAGAATGCGCAAGCCGGGGA-TGACCCGGTCCCC-CTGTGTGCTGCCGATC
* * * * * * *
12613515 CCGTTGCCACCACCCTCTGTTCGA-CTGGG
127 CTGCTGTCACAACCCTC-GATCCATCTGGA
* * * * *
12613544 GCTTAGACATGGAATTAACCCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
*
12613609 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCTCCTGTGTGCTGCCGATCC
66 CCGG-CGGAGAGGCAGAATGCGCAAGCCGGGGAT-GACCCGGTCCC-CCTGTGTGCTGCCGATCC
* * *
12613674 TACTGTCGCAACCCTCGATCCGATAT-GA
128 TGCTGTCACAACCCTCGATCC-ATCTGGA
* * *
12613702 TCTTAGA-TTAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12613730 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 77 0.29
157 26 0.10
158 151 0.58
159 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATGACCCGGTCCCCCTGTGTGCTGCCGATCCTGC
TGTCACAACCCTCGATCCATCTGGA
Found at i:12614107 original size:26 final size:26
Alignment explanation
Indices: 12614070--12614120 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12614060 CAGTCTGATC
*
12614070 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAACGAACTCCATATGG
12614096 TTAGACAT-GGAACGAACTCCATATG
1 TTAGAC-TGGGAACGAACTCCATATG
12614121 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAACGAACTCCATATGG
Found at i:12616315 original size:26 final size:26
Alignment explanation
Indices: 12616277--12616329 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12616267 CCAGTCTGAT
12616277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12616303 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12616329 C
1 C
12616330 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12616645 original size:159 final size:157
Alignment explanation
Indices: 12616302--12616646 Score: 345
Period size: 158 Copynumber: 2.2 Consensus size: 157
12616292 AACTCCGTAT
* *** * *
12616302 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCACGCAGGCACTCAG
* ** * * * *
12616367 CTGGCCGAAAAGGTAGAATGCGTAAGTTGGGGATCGGCTTGATCCCCCCTGCGTACTGTCGATCC
65 CTGGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCCCCCTGCGTACTCTCGATCC
*
12616432 TGCTGCCGCAACCCTCGATCTGGTCTGA
130 TGCTGCCACAACCCTCGATCTGGTCTGA
* * ** * * *
12616460 TCTTAGACTTGTAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCACGCAGGCACTGAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCACGCAGGCACTCAG
* * * * * *
12616525 CTGGCTGAAGAGGCATAATGTGTAAGCCGAGGATCGACTCGATCCCCCTCTGCGTGCTACT-GGT
65 CTGGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCCCC-CTGCGTACT-CTCGAT
* *
12616589 CTTGCTGCCACAACCCTCGAT-TCGG-CTGGG
128 CCTGCTGCCACAACCCTCGATCT-GGTCT-GA
12616619 GCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
12616647 TTAGACTGGA
Statistics
Matches: 148, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
158 93 0.63
159 54 0.36
160 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCACGCAGGCACTCAGC
TGGCCGAAAAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCCCCCTGCGTACTCTCGATCCT
GCTGCCACAACCCTCGATCTGGTCTGA
Found at i:12616655 original size:26 final size:26
Alignment explanation
Indices: 12616619--12616672 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
12616609 TTCGGCTGGG
12616619 GCTTAGACTGG-GAATGAACTCCGTAT
1 GCTTAGACTGGAG-ATGAACTCCGTAT
*
12616645 GCTTAGACTGGAGATGAACTCTGTAT
1 GCTTAGACTGGAGATGAACTCCGTAT
12616671 GC
1 GC
12616673 CTATGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGAGATGAACTCCGTAT
Found at i:12617039 original size:26 final size:26
Alignment explanation
Indices: 12617001--12617053 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12616991 CCGATCTGAT
12617001 CTTAGACTGGGAATAAACTT-CGTATG
1 CTTAGACTGGGAATAAA-TTCCGTATG
*
12617027 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATAAATTCCGTATG
12617053 C
1 C
12617054 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAATTCCGTATG
Found at i:12617280 original size:142 final size:142
Alignment explanation
Indices: 12617024--12617458 Score: 367
Period size: 142 Copynumber: 3.0 Consensus size: 142
12617014 TAAACTTCGT
*
12617024 ATGCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGCGCTC
* * *
12617089 AGCCGGTCAGAGAGGCTGAATACGCAAGGCGGGGATTGGCCCGATCCCCCCTGCGTGCTATCGAT
66 AGCCGGTCAGAGAGGCTGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGAT
12617154 CCTGCTACCACA
131 CCTGCTACCACA
* * * * *
12617166 ATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGCGCT
* * * * * **
12617230 GAGCCGG-CTGGAGAGGCAT-AATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGATGC
65 CAGCCGGTC-AGAGAGGC-TGAATACGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTAT
* *
12617293 CGATCCCGCTGCCACA
127 CGATCCTGCTACCACA
* * *
12617309 ACCCTCGGTCTGGCTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAAC
1 A---------T-GC------TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAAC
* * * * * ** *
12617374 GGGCATGCGGGCGCTCAGCCGATC-GAAGGGGGAGAATACGCAAGCCGGGGATCGGCCCGATCCC
50 GAGCGTACGGGCGCTCAGCCGGTCAG-AGAGGCTGAATACGCAAGCCGGGGATCGACCCGATCCC
**
12617438 CCCTGC-TGCTGCCGATCCTGC
114 CCCTGCGTGCTATCGATCCTGC
12617459 AGCCGTAACC
Statistics
Matches: 234, Mismatches: 35, Indels: 33
0.77 0.12 0.11
Matches are distributed among these distances:
141 2 0.01
142 97 0.41
143 23 0.10
152 1 0.00
153 2 0.01
157 13 0.06
158 4 0.02
159 90 0.38
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (142 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGCGCTC
AGCCGGTCAGAGAGGCTGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGAT
CCTGCTACCACA
Found at i:12617500 original size:159 final size:158
Alignment explanation
Indices: 12617170--12617515 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 158
12617160 ACCACAATGC
* * * * *
12617170 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* * * *
12617235 GGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGATGCCGATCCC
66 GGCTGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCTGATGCCGATCCC
* *
12617300 GCTGCCACAACCCTCGGTCTGGCTGGGAA
131 GCAGCCACAACCCTCGGTCCGGCT-GGAA
* * *
12617329 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAACGGGCATGCGGGCGCTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * *
12617393 C-GATCGAAGGGGGAGAATACGCAAGCCGGGGATCGGCCCGATCCCCC-CTG-CTGCTGCCGATC
65 CGGCT-GAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCTGATGCCGATC
* ** * *
12617455 CTGCAGCCGTAACCTTCGGTCCGGTCT-GATC
129 CCGCAGCCACAACCCTCGGTCCGG-CTGGA-A
12617486 TATAGGACTGGGAATGAACT-CGTATGCCTA
1 T-TA-GACTGGGAATGAACTCCGTATGCCTA
12617516 CTGAGGATGA
Statistics
Matches: 155, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
156 2 0.01
157 29 0.19
158 19 0.12
159 104 0.67
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
GGCTGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGTCTGATGCCGATCCC
GCAGCCACAACCCTCGGTCCGGCTGGAA
Found at i:12618249 original size:26 final size:26
Alignment explanation
Indices: 12618211--12618262 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12618201 GGCTCAAAAT
12618211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12618237 CTTAGACAT-GGAATGAAGTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12618263 ACTAAGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12618747 original size:26 final size:26
Alignment explanation
Indices: 12618711--12618763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12618701 CAGGTTCGAT
*
12618711 CTTAGACTAAGAATAAACTCTGTATG
1 CTTAGACTAAGAATAAACTCCGTATG
* *
12618737 CTTAGACTAAGGATGAACTCCGTATG
1 CTTAGACTAAGAATAAACTCCGTATG
12618763 C
1 C
12618764 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATAAACTCCGTATG
Found at i:12619116 original size:26 final size:26
Alignment explanation
Indices: 12619078--12619128 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12619068 CCAGTTCGAT
12619078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12619104 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
12619129 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12619508 original size:159 final size:155
Alignment explanation
Indices: 12619103--12619518 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 155
12619093 AACTCCGTAT
* * * * *
12619103 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATGAAACGAGCGTGCAGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
* * * * * * *
12619168 CCGACCGGAGAGACAGAATGCGTAAGCCAGGGATCGACCCAATCCCTTGTGTGCTATCAATCCTA
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCTTGCGTGCTACCAATCCCA
***
12619233 CTACTGTAACCCTCGGTCTGATCTGA
131 CTACCACAACCCTCGGTCTGA-CTGA
* * * *
12619259 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * ** * * *
12619323 A-CTGATCGGAGAGGCATAATAAGCAAGCCGGGGATC-AGCCCGATCCCTCTCTGCGTGCTGCCA
65 ACCGGCT-GGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCAAT-CC-CT-TGCGTGCTACCA
* * * *
12619386 GTCCCACTGCCACAACCCTCAGTTCTG-CTGGG
125 ATCCCACTACCACAACCCTC-GGTCTGACT-GA
* * * *
12619418 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
12619483 CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCG
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCG
12619519 GTCTGGTCTG
Statistics
Matches: 205, Mismatches: 44, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 83 0.40
157 2 0.01
158 4 0.02
159 104 0.51
160 9 0.04
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
CCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCTTGCGTGCTACCAATCCCA
CTACCACAACCCTCGGTCTGACTGA
Found at i:12619628 original size:26 final size:26
Alignment explanation
Indices: 12619577--12619629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12619567 CCGGTCCGAT
* *
12619577 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
12619603 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
12619629 C
1 C
12619630 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:12620344 original size:159 final size:158
Alignment explanation
Indices: 12619937--12620367 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 158
12619927 AACTCTGTAC
* * *
12619937 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
*** * * * ** * *
12620002 CTGGTTGGAGAGGCAGAATGCGCAAGCTGGGGA-CAGACCCAATCCCTC-CTGCGTGCTATCGAT
66 C-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGGTCCCCCTCTGCGTGCTACCGAT
** * * * *
12620065 CTTGCTGTCGCAACCCTCAGTCTGGTCTGA
129 CCCGCTGCCACAACCCTCAGTCTCGCCTGA
* * ** * * *
12620095 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTTGGGCGTTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-C
* * * * ** *
12620159 ACCTACCGAAGAGCCATAATATGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGGA
64 AGCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACC-GA
* * * *
12620224 -CCCGTTGCCACAACCTTCGGTC-CGCCTGGG
128 TCCCGCTGCCACAACCCTCAGTCTCGCCT-GA
* *
12620254 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
12620319 TCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCCCT
66 -CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT
12620368 ACATGCTGTT
Statistics
Matches: 211, Mismatches: 54, Indels: 15
0.75 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 85 0.40
159 122 0.58
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCAGTCTCGCCTGA
Found at i:12620442 original size:26 final size:26
Alignment explanation
Indices: 12620413--12620464 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12620403 CCGGTCTGAT
*
12620413 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCATATG
* * *
12620439 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
12620465 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:12620857 original size:169 final size:166
Alignment explanation
Indices: 12620508--12620975 Score: 408
Period size: 169 Copynumber: 2.8 Consensus size: 166
12620498 TTCAACCGGT
* ** * *
12620508 CGAAGAGGCATAATGCACAAGTTGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCT
1 CGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGAT-CCCC-CTACGTGCTGTCGATCCTGC-
* * * * ** **
12620573 GTCGGTCCTGCTACCACAACCTTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCATATG
63 -T-GGTCCTGCTACCGCAACCCTCAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATG
* * *
12620636 CCTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGAC
124 CCTAAGCCAACCCACCAAACAAGCGAGCGGGCACTCAACAGAC
* * *
12620679 CGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTACGTGCTATCAATCCTATTGC
1 CGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTACGTGCTGTCGATCC---TGC
12620744 TGGTCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
63 TGGTCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
** * ** ** *
12620809 AGGTAATCCATGAAACAAGCGAGCGGGTGCTCAGCTAG-C
128 AGCCAACCCACCAAACAAGCGAGCGGGCACTCAAC-AGAC
* * *
12620848 CGAAGAGGCAGAATG-AGCAAGCC-AGGGAT-GGCCCGGTCCCCCTATGTGCTGTCGAT-C--CT
1 CGAAGAGGCAGAATGCA-CAAGCCGA-GGATCAGCCCGATCCCCCTACGTGCTGTCGATCCTGCT
* *
12620907 -G--CTGCT---GCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
64 GGTCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
**
12620966 GTTAACCCAC
129 GCCAACCCAC
12620976 GAAATGAGCA
Statistics
Matches: 251, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
156 58 0.23
159 5 0.02
161 1 0.00
162 2 0.01
167 1 0.00
168 25 0.10
169 114 0.45
170 9 0.04
171 34 0.14
172 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (166 bp):
CGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTACGTGCTGTCGATCCTGCTGG
TCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
CAACCCACCAAACAAGCGAGCGGGCACTCAACAGAC
Found at i:12621070 original size:156 final size:155
Alignment explanation
Indices: 12620757--12621080 Score: 348
Period size: 156 Copynumber: 2.1 Consensus size: 155
12620747 TCCTGCTACC
* * *
12620757 GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGTAATCCATGA
1 GCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGTAACCCACGA
* *
12620822 AACAAGCGAGCGGGTGCTCAGCTAGCCGAAGAGGCAGAATGAGCAAGCCAGGGATGGCCCGGTCC
66 AACAAGCGAGCGGGTGCTCAGCTAGCCGAAAAGGCAGAATGAGCAAGCCAGGGATGGCCCGATCC
* * *
12620887 CCCTATGTGCTGTCGATCCTGCTGCT
131 CCCTACGTACTATCGATCC-GCTGCT
* *
12620913 GCAACCCTTAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGA
1 GCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGTAACCCACGA
** * * * * * * *
12620978 AATGAGC-ATTCGGGTGCTGAGCT-GCCCGAAAAGGCATAAT-ACGTAAGTCGGGGATCGGCTCG
66 AACAAGCGA-GCGGGTGCTCAGCTAG-CCGAAAAGGCAGAATGA-GCAAGCCAGGGAT-GGCCCG
* * *
12621040 ATCCCTCTCTGCGTACTATCGGTCCCGCTGCC
127 ATCCC-C-CTACGTACTATCGAT-CCGCTGCT
*
12621072 ACAACCCTC
1 GCAACCCTC
12621081 GATCCGGCTG
Statistics
Matches: 137, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
155 3 0.02
156 100 0.73
157 9 0.07
158 1 0.01
159 22 0.16
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (155 bp):
GCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGTAACCCACGA
AACAAGCGAGCGGGTGCTCAGCTAGCCGAAAAGGCAGAATGAGCAAGCCAGGGATGGCCCGATCC
CCCTACGTACTATCGATCCGCTGCT
Found at i:12621460 original size:184 final size:182
Alignment explanation
Indices: 12621093--12621460 Score: 436
Period size: 182 Copynumber: 2.0 Consensus size: 182
12621083 TCCGGCTGGG
*** *
12621093 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCGCTCAG
* * * *
12621158 CCAGCCGGAGAGGTAGAATGCACAAGCCGGGGATAGGCCTGGGCCCCTACGTGCTGCCGATCCTA
66 CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGACAGGCCTGGCCCCCTACGTGCTGCCGATCCTA
* * * *
12621223 CTGCCGTAACCCTCAGTCCAATCTGATCTTAGATTGGGAATGAACTACGTAT
131 CTGCCGCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTACGTAT
* * * * *
12621275 GCTTGGACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCAT-A
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCGC-TCA
* * * * *
12621339 GCCTGTCGGAGAGGCAGAACATGCA-AA-CCAGGGACCGGCCTGGTCCCCCCTGCGTGCTGTCGA
65 GCCAGCCGGAGAGGCAG-A-ATGCACAAGCCAGGGACAGGCCTGG--CCCCCTACGTGCTGCCGA
* * * *
12621402 TCCTGCTGCTGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
126 TCCTACTGCCGCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTACGTAT
12621459 GC
1 GC
12621461 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
182 80 0.52
183 4 0.03
184 71 0.46
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGCCGCTCAG
CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGACAGGCCTGGCCCCCTACGTGCTGCCGATCCTA
CTGCCGCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTACGTAT
Found at i:12622475 original size:26 final size:25
Alignment explanation
Indices: 12622446--12622497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
12622436 CTGATCTGAT
12622446 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTC-GTATG
12622472 CTTAGACATGGAATGAACTCGTATG
1 CTTAGACATGGAATGAACTCGTATG
12622497 C
1 C
12622498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 18 0.72
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:12622971 original size:26 final size:26
Alignment explanation
Indices: 12622942--12622994 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12622932 CCGATCTGAT
* *
12622942 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATAAACTCCGTATG
12622968 CTTAGACTGGAGATAAACTCCGTATG
1 CTTAGACTGGAGATAAACTCCGTATG
12622994 C
1 C
12622995 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATAAACTCCGTATG
Found at i:12624035 original size:159 final size:156
Alignment explanation
Indices: 12623691--12624129 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 156
12623681 AACTCCATAT
12623691 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGCCCAA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GCCCAA
* * * * * *
12623755 CCAGTCGGAGAGGCAGAACGGGCAAGCCGGGGATTGACCTGGTCTCCCCTGCGTGTTGTCAATCC
64 CCAGTCGGAGAGGCAGAACGGGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
*
12623820 TACTGCCACAACCCTTAGTCCGGTCCGA
129 TACTGCCACAACCCTCAGTCCGGTCCGA
* * * * * *
12623848 TCTTAGAC-TGGGTATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-C-CA
* * * * * * **
12623912 GCC-GATCGGAGAGGCATAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
63 ACCAG-TCGGAGAGGCAGAACGGGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCAA
* * * * *
12623976 TCCTGCTGCCACAACCCTCGGTCTGG-CTGGG
126 TCCTACTGCCACAACCCTCAGTCCGGTC-CGA
* * *
12624007 GCTTGGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-C-CAA
* * * *** *
12624072 CCAG-CTAGAAAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTG
64 CCAGTC-GGAGAGGCAGAACGGGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTG
12624130 TCGATGTTGC
Statistics
Matches: 228, Mismatches: 44, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 51 0.22
158 50 0.22
159 122 0.54
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCCAACC
AGTCGGAGAGGCAGAACGGGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCTA
CTGCCACAACCCTCAGTCCGGTCCGA
Found at i:12624584 original size:26 final size:26
Alignment explanation
Indices: 12624533--12624585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12624523 TCGGTCTGAT
*
12624533 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12624559 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12624585 C
1 C
12624586 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12625899 original size:26 final size:26
Alignment explanation
Indices: 12625870--12625922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12625860 CCGGTTTGAT
*
12625870 CTTAGACTGGGAATGATCTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
12625896 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12625922 C
1 C
12625923 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12626285 original size:26 final size:26
Alignment explanation
Indices: 12626235--12626287 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12626225 CCAGTCCGAT
**
12626235 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12626261 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
12626287 C
1 C
12626288 CTAAGGCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12626775 original size:26 final size:25
Alignment explanation
Indices: 12626734--12626785 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12626724 CTGGTCTGAT
* *
12626734 CTTAGACTTGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
12626759 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
12626785 C
1 C
12626786 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:12626815 original size:181 final size:184
Alignment explanation
Indices: 12626577--12626943 Score: 483
Period size: 181 Copynumber: 2.0 Consensus size: 184
12626567 TCCGATTGGG
* * * *
12626577 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGAGGCGTGCGGGCACACAG
* * * *
12626642 -CTGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATAGGCCTGGGCCCCC-TGCGTGCTGTCGATC
66 CCT-GTCGGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGAGCCCCCTTGCGTGCTGTCGATC
* * ** * * *
12626704 CTACCGCCGTAACCCTCGGTCTGGTCTGATCTTAGACT-TGAATGAACTTCGTAT
130 CTACCACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
12626758 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACACA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GAGGCGTGCGGGCACACA
* *
12626822 GCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCTTGCGTGCTGTCGATC
65 GCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGAGCCCCCTTGCGTGCTGTCGATC
* * *
12626887 CTGCTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CTACCACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
12626942 GC
1 GC
12626944 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
181 82 0.52
182 16 0.10
183 45 0.28
184 16 0.10
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGAGGCGTGCGGGCACACAG
CCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGAGCCCCCTTGCGTGCTGTCGATCC
TACCACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:12627001 original size:498 final size:502
Alignment explanation
Indices: 12626062--12627174 Score: 1323
Period size: 498 Copynumber: 2.2 Consensus size: 502
12626052 TTGGTCCGGC
* * *
12626062 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
* * * * * * *
12626127 TCAACCGGGCGGAGAGGCAGAATGCAC-AGTCGGAGATCGGCTGATCCCCCCTACGTGCTGTCGA
66 TCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGG-GATAGGCTGAGCCCCCCTACGTGCTGTCGA
*
12626191 TCCTACTGTTGGTCCTACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTT
130 TCCTA-------T-C-ACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTC
* * * * **
12626256 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCCACTCGTGATACAAGCATATGGGTGC
186 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCCACCCATGAAACAAGCATACGGGCAC
* * * *
12626321 TCAACAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATGGCCCGATCCCACCTTGTGTGCTGTCG
251 ACAACAGGTCGGAGAGGCAGAATGCGCAAGCCGAGGACGACCCGATCCCACCTTGCGTGCTGTCG
* * * *
12626386 ATCCTGTTACTGCAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCCTCAG
316 ATCCTGCTACCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAG
* * * *
12626451 TCAACCTACAAAACGAGCATACGGGTGCTGAGCAAGCCGGAAAGGCATAATGCGTAAGCC-AGGG
381 TCAACCCACAAAACGAGCATACGGGCGCTGAACAAGCCGGAAAGGCATAATGCGCAAGCCGA-GG
* ** *
12626515 ATCAGCCCGAT-CCCTCTCTGCGTGCTGTTGGTCTCGCTGCCACAACCCTCCATCCGAT
445 ACCAGCCCGATCCCCT-TCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCCATCCGAT
* *
12626573 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGTGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
* * *
12626638 TCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGATAGGCCTG-GGCCCCCTGCGTGCTGTCGA
66 TCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGATAGG-CTGAGCCCCCCTACGTGCTGTCGA
* ** * *
12626702 TCCTA-C-C-GCCGTAACCCTCGGTCTGGTCTGATCTTAGACTTG-AATGAACTTCGTATGCTTA
130 TCCTATCACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTA
* * * * **
12626763 GACATGGAATGAACTCCGTATGCCTAA-GCCAACCCATGAAACGAGCGTGCGGGCACACAGCCTG
195 GACATGGAATGAACTCCGTATGCCTAAGGCC-ACCCATGAAACAAGCATACGGGCACACAACAGG
12626827 TCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGACCCGATCCC-CCTTGCGTGCTGTCGATCCTG
259 TCGGAGAGGCAGAATGCGCAAGCCGA-GGA-CGACCCGATCCCACCTTGCGTGCTGTCGATCCTG
** *
12626890 CTACCGCAACCCTTGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
322 CTACCGCAACCCTCAGTCCGA-TCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * ** * * * *
12626954 CCACGAAATGAGCATTTGGGCGTTGAACCGGCTGGAGAGGTATAATGCGCAAGCCGAGGACCGGC
386 CCACAAAACGAGCATACGGGCGCTGAACAAGCCGGAAAGGCATAATGCGCAAGCCGAGGACCAGC
* * * * * *
12627019 CCGGTCCCCTTCTGTGTGTTGCCGGTCCCGCTGCTACAACCCTCGATCCGGT
451 CCGATCCCCTTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCCATCCGAT
*
12627071 TGGGGCTTAGACATGGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTG
1 TGGGGCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCG
* *
12627136 CTAAGCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGAT
65 CTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCG-GGAT
12627175 CGACCCGATC
Statistics
Matches: 518, Mismatches: 74, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
497 5 0.01
498 268 0.52
499 121 0.23
500 5 0.01
502 1 0.00
511 110 0.21
512 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (502 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
TCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGATAGGCTGAGCCCCCCTACGTGCTGTCGAT
CCTATCACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAG
ACATGGAATGAACTCCGTATGCCTAAGGCCACCCATGAAACAAGCATACGGGCACACAACAGGTC
GGAGAGGCAGAATGCGCAAGCCGAGGACGACCCGATCCCACCTTGCGTGCTGTCGATCCTGCTAC
CGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
AAACGAGCATACGGGCGCTGAACAAGCCGGAAAGGCATAATGCGCAAGCCGAGGACCAGCCCGAT
CCCCTTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCCATCCGAT
Found at i:12627361 original size:321 final size:317
Alignment explanation
Indices: 12626758--12627581 Score: 969
Period size: 321 Copynumber: 2.6 Consensus size: 317
12626748 AACTTCGTAT
* *
12626758 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCAC-AC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTA-
* * * *
12626821 AGCCT-GTCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGACCCGATCCCCCTTGCGTGCTGTCG
64 AG-CTGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCACTTGCGTGCTGCCG
* * * *
12626884 ATCCTGCTACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
127 ATACTGCTACCGCAACCCTCGGTCCAGTCCGATCTTACACTAGGAATGAACTCCGTATGCCTAAG
* * * * * *
12626949 TCAACCCACGAAATGAGCATTTGGGCGTTGAACCGGCTGGAGAGGTATAATGCGCAAGCCGAGGA
192 TCAACACACGAAATGAGCATGTGGGCGTTGAACCAGCTGGAGAGGCATAATGCACAAGCAGAGGA
* * * * * *
12627014 CCGGCCCGGTCCCCTTCTGTGTGTTGCCGGTCCCGCTGCTACAACCCTCGATCCGGTTGGG
257 CCGGCCCGGTCCCCCTCTGCGTGTTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGG
* *
12627075 GCTTAGACATGGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTAA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTAA
* *
12627140 GCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCTAC-TGCGTGTTGCCGAA
65 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-ACTTGCGTGCTGCCG-A
* * * * *
12627204 TGAACTGTTGCCGCAACCCTCGGTTCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCCTAA
128 T--ACTGCTACCGCAACCCTCGGTCCAGTCCGATCTTACACTAGGAATGAACTCCGTATGCCTAA
* * *
12627269 GTCAACACATGAAATGAGCGTGTGGGCGTTGAGCCAGCTGGAGAGGCATAATGCACAAGTCAG-G
191 GTCAACACACGAAATGAGCATGTGGGCGTTGAACCAGCTGGAGAGGCATAATGCACAAG-CAGAG
* * *
12627333 GATCGGCCCGGTCCCCCTCTGCGTGTTGCCGATCCCGCTACCATAACCCTCGGTCCGGCTGGG
255 GACCGGCCCGGTCCCCCTCTGCGTGTTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGG
* * *
12627396 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTAAG
* * * * * * * * * * *
12627461 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCACTTGCGTGCTGCCGATAC
** * * ** * *
12627526 TGCTGTCGTAACCCTCGGT-CTGATTTGATCTTAGACTAGGAATGAACTCTGTATGC
131 TGCTACCGCAACCCTCGGTCCAG-TCCGATCTTACACTAGGAATGAACTCCGTATGC
12627582 TTAGACTGGG
Statistics
Matches: 434, Mismatches: 61, Indels: 24
0.84 0.12 0.05
Matches are distributed among these distances:
316 2 0.00
317 61 0.14
318 93 0.21
319 9 0.02
320 97 0.22
321 170 0.39
322 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTAAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCACTTGCGTGCTGCCGATAC
TGCTACCGCAACCCTCGGTCCAGTCCGATCTTACACTAGGAATGAACTCCGTATGCCTAAGTCAA
CACACGAAATGAGCATGTGGGCGTTGAACCAGCTGGAGAGGCATAATGCACAAGCAGAGGACCGG
CCCGGTCCCCCTCTGCGTGTTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGGG
Found at i:12627427 original size:159 final size:157
Alignment explanation
Indices: 12626758--12627581 Score: 651
Period size: 159 Copynumber: 5.2 Consensus size: 157
12626748 AACTTCGTAT
* *
12626758 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACACAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCGTGCGGGCGCTCAG
* * * * * *
12626823 CCTG-TCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCT-TGCGTGCTGTCGAT
65 CCGGCT-GGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGAT
* * * *
12626886 CCTGCTACCGCAACCCTTGGTCCAG-TCCGA
128 CCTGCTGCCGCAACCCTCGGTCCGGCT-GGA
* * * * ** * *
12626916 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCGTGCGGGCGCTCA
* * * * * * * *
12626980 ACCGGCTGGAGAGGTATAATGCGCAAGCCGAGGACCGGCCCGGTCCCCTTCTGTGTGTTGCCGGT
64 GCCGGCTGGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGAT
* ** * * *
12627045 CCCGCTGCTACAACCCTCGATCCGGTTGGG
128 CCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * * * *
12627075 GCTTAGACATGGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTAA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAAGA-GCGTGCGGGCGCTCA
* * * * * *
12627140 GCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGAT--CCCTACTGCGTGTTGCCGA
64 GCCGGCTGGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGGTCCCCCT-CTGCGTGTTGCCG-
* * *
12627203 ATGAACTGTTGCCGCAACCCTCGGTTCGGTCT-GA
126 AT--CCTGCTGCCGCAACCCTCGGTCCGG-CTGGA
* * * * * * *
12627237 TCTTACAC-TAGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGTGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGCGTGCGGGCGCTCA
* * *
12627301 GCCAGCTGGAGAGGCATAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGAT
64 GCCGGCTGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGAT
* * ** *
12627366 CCCGCTACCATAACCCTCGGTCCGGCTGGG
128 CCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * * *
12627396 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCTTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGA-GCGTGCGGGCGCTCAG
* * * * * * *
12627461 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCATGCTGTCGATC
65 CCGGCTGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGATC
* * * ** *
12627525 CTGCTGTCGTAACCCTCGGTCTGATTTGA
129 CTGCTGCCGCAACCCTCGGTCCGGCTGGA
* *
12627554 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12627582 TTAGACTGGG
Statistics
Matches: 518, Mismatches: 126, Indels: 44
0.75 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 149 0.29
159 161 0.31
160 80 0.15
161 76 0.15
162 43 0.08
163 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGAGCGTGCGGGCGCTCAGC
CGGCTGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGATCCT
GCTGCCGCAACCCTCGGTCCGGCTGGA
Found at i:12627584 original size:26 final size:26
Alignment explanation
Indices: 12627555--12627607 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12627545 CTGATTTGAT
*
12627555 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* **
12627581 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12627607 C
1 C
12627608 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12628671 original size:26 final size:26
Alignment explanation
Indices: 12628632--12628684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12628622 TCGGTCTGAA
12628632 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
12628658 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
12628684 C
1 C
12628685 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12629086 original size:26 final size:26
Alignment explanation
Indices: 12629057--12629109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12629047 CCGGTTCGAT
12629057 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
12629083 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
12629109 C
1 C
12629110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:12629305 original size:26 final size:26
Alignment explanation
Indices: 12629254--12629306 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12629244 CCGGTCGGAT
* *
12629254 CTTAGACTAGGAATGAAGTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12629280 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
12629306 C
1 C
12629307 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12629682 original size:159 final size:157
Alignment explanation
Indices: 12629279--12629707 Score: 409
Period size: 159 Copynumber: 2.7 Consensus size: 157
12629269 AAGTTCATAT
* * *
12629279 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TGGGCGCTCAG
* * * * * * ** *
12629344 TCGGCCTG-AGAGGCAGAATGCACAAGCCAAGGACCGGCTTGGT-GCCCACTGCGTGCTGTCGAT
65 CCGG-C-GAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCACTGCGTGCTGTCGAT
*
12629407 CCTATTGCCACAACCCTCGGTCCGGTCCAA
128 CCTATTGCCACAACCCTCGGTCCGCTCCAA
* * * * *
12629437 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTT-GGGCGCTCA
* * * * * *
12629501 GCCGGCCAGAGAAGCATAATGCGCAAGTCAGGGATTGACCCGGTCCCCCTCTGCGTGCTGTCGGT
64 GCCGGCGA-AGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCACTGCGTGCTGTCGAT
* * ***
12629566 -CTCGTTGCCACAACCCTCGGTCTGACT-GGG
128 CCT-ATTGCCACAACCCTCGGTCCG-CTCCAA
* * *
12629596 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TGGGCGCTCAG
* * * *
12629661 CCGGTCGAAGATGCAGAATGCGTAAGCCGGGGATCAACCCGGTCCCC
65 CCGG-CGAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCC
12629708 TCTAAGTGCT
Statistics
Matches: 216, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 84 0.39
159 125 0.58
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTGGGCGCTCAGC
CGGCGAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCACTGCGTGCTGTCGATCCT
ATTGCCACAACCCTCGGTCCGCTCCAA
Found at i:12630908 original size:26 final size:26
Alignment explanation
Indices: 12630879--12630931 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630869 CCAGTCCGAT
12630879 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
12630905 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12630931 C
1 C
12630932 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12631639 original size:26 final size:26
Alignment explanation
Indices: 12631601--12631653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631591 GGCTCAAACT
* *
12631601 CTTAGACTAGGAATTAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12631627 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
12631653 C
1 C
12631654 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12631980 original size:26 final size:26
Alignment explanation
Indices: 12631944--12631994 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631934 CCAGTTCGAT
*
12631944 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
12631970 CTTAGACTGGGGTTGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12631995 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12632182 original size:26 final size:26
Alignment explanation
Indices: 12632153--12632205 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12632143 CCAGTCTGAT
*
12632153 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
12632179 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
12632205 C
1 C
12632206 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:12632387 original size:26 final size:26
Alignment explanation
Indices: 12632349--12632404 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
12632339 CCGATCTGAT
*
12632349 CTTAGATTGGGAATGAGCTACGTATG
1 CTTAGATTGGGAATGAACTACGTATG
*
12632375 CTTAGATAT-GGAATGAACTTCGTATG
1 CTTAGAT-TGGGAATGAACTACGTATG
12632401 CTTA
1 CTTA
12632405 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTACGTATG
Found at i:12632388 original size:196 final size:194
Alignment explanation
Indices: 12632098--12632658 Score: 564
Period size: 196 Copynumber: 2.9 Consensus size: 194
12632088 ATCCCCTCTA
* * *
12632098 CGTGCTATCGATCCTGCTGTTGGTCCTGCTGCTGTAACC-CTCGGTCCAGTCTGATCTTAGACTT
1 CGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGTAACCTCT-GGTCCA-TCTGATCTTAGA-TT
* * * *
12632162 -GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACG
63 GGGAATG-ACTACGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * * *
12632226 AGCATGCGGGCACTCAACCGGCTAGAGAGGCAGAATTCGTAAGCCGGGGATCGACCCAGTCCTCC
127 AGCGTGTGGGCACTCAACCGGCTAGAGAGGCAGAATTCGTAAGCCGGGGATCGACCCAGACCCCC
12632291 CTG
192 CTG
12632294 CGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGTAACCTCTGGTCCGATCTGATCTTAGATTGG
1 CGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGTAACCTCTGGTCC-ATCTGATCTTAGATTGG
* * *
12632359 GAATGAGCTACGTATGCTTAGATATGGAATGAACTTCGTATGCTTAAGCCAACCCAC-AGAACAA
65 GAATGA-CTACGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGA
* * * * * *
12632423 GCGTGTGGCCACTCAATC-GATCGGAGAGGCAGAATGT-GCAAGCCGGGGATCGGCCCAGACCCC
128 GCGTGTGGGCACTCAACCGGCT-AGAGAGGCAGAAT-TCGTAAGCCGGGGATCGACCCAGACCCC
12632486 CCTG
191 CCTG
* * * * * *
12632490 CATGCTGTCGAT-C--CTACT-GT-C-GCAACC-T----TC-GGTCTAATCTGATCTTAGACTGG
1 CGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGTAACCTCTGGTC-CATCTGATCTTAGATTGG
* ** * * *
12632543 GAATGAATTTGTATGCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
65 GAATGACTACGTATGCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
12632607 CGCGTGGGCACTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCGA
129 CGTGTGGGCACTCAACCGGCTAGAGAGGCAGAATTCGTAAGCCGGGGATCGA
12632659 ACGGGTGGTA
Statistics
Matches: 307, Mismatches: 46, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
183 84 0.27
184 28 0.09
185 2 0.01
189 1 0.00
190 5 0.02
191 1 0.00
192 2 0.01
193 4 0.01
195 7 0.02
196 169 0.55
197 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (194 bp):
CGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGTAACCTCTGGTCCATCTGATCTTAGATTGGG
AATGACTACGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
TGTGGGCACTCAACCGGCTAGAGAGGCAGAATTCGTAAGCCGGGGATCGACCCAGACCCCCCTG
Found at i:12632582 original size:26 final size:25
Alignment explanation
Indices: 12632533--12632584 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
12632523 CTAATCTGAT
**
12632533 CTTAGACTGGGAATGAATTTGTATG
1 CTTAGACTGGGAATGAATCCGTATG
*
12632558 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAA-TCCGTATG
12632584 C
1 C
12632585 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCCGTATG
Found at i:12633288 original size:26 final size:26
Alignment explanation
Indices: 12633250--12633302 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12633240 GGCTCAAACT
12633250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12633276 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12633302 C
1 C
12633303 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12633644 original size:26 final size:26
Alignment explanation
Indices: 12633593--12633645 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12633583 CTGATCTGAT
* * *
12633593 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12633619 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12633645 C
1 C
12633646 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12635062 original size:26 final size:25
Alignment explanation
Indices: 12635021--12635070 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
12635011 GGCTCAAAAT
12635021 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
* *
12635046 CTTAGACATTGAATGAACTCTGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
12635071 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:12636137 original size:158 final size:157
Alignment explanation
Indices: 12635887--12636232 Score: 359
Period size: 158 Copynumber: 2.2 Consensus size: 157
12635877 GGTCCAGTCT
* * * * *
12635887 GATCTTAGACTGAGAATGAACTCCGTACGCCTAAGTCAACCTATGAAACGAGCGTGCAGGCACTC
1 GATCTTAGACT-AGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAACGTACAGGCACTC
* * ** * *
12635952 AGCCGACCGGAGAGGCAGAATGTGCAAGTCGGGGACCGACCCGGTCCCCCCTGCATGTTGTCGAT
65 AGCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGTCCCCCCTGCATGCTGTCGAT
* *
12636017 CCTGCTGCTGCAACCCACGGTCTGATCC
130 CCTGCTACTGCAACCCACGGGCTGATCC
* * ** *
12636045 GATCTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAATGTACGGGTTCTG
1 GATCTTAGACTA-GAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAACGTACAGGCACTC
* * ** * * * * * *
12636110 AGTCGGCCGGAGAGTTAGAATGCGCAAGCCAATGATCAATCCGGTCCCTCTTGCGTGCTGTCGAT
65 AGCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGTCCCCCCTGCATGCTGTCGAT
* * * *
12636175 CCTGCTACTGTAACCCTCGGGCTGGTCT
130 CCTGCTACTGCAACCCACGGGCTGATCC
* *
12636203 GATCTTAGACTGGGAATGAACTCTGTATGC
1 GATCTTAGACT-AGAATGAACTCCGTATGC
12636233 TTAGACTGGC
Statistics
Matches: 152, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 151 0.99
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
GATCTTAGACTAGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAACGTACAGGCACTCA
GCCGACCGGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGTCCCCCCTGCATGCTGTCGATC
CTGCTACTGCAACCCACGGGCTGATCC
Found at i:12636250 original size:26 final size:26
Alignment explanation
Indices: 12636206--12636258 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12636196 CTGGTCTGAT
*
12636206 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
12636232 CTTAGACTGGCG-ATAAACTTCGTATG
1 CTTAGACTGG-GAATAAACTTCGTATG
12636258 C
1 C
12636259 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:12637443 original size:26 final size:26
Alignment explanation
Indices: 12637407--12637459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12637397 CTAGTTCGAT
12637407 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
12637433 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
12637459 C
1 C
12637460 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:12637740 original size:347 final size:343
Alignment explanation
Indices: 12637090--12637772 Score: 881
Period size: 347 Copynumber: 2.0 Consensus size: 343
12637080 TTGGTCCAAT
* * * * * *
12637090 CTTATACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGCGTGTTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGCGTGCTCAGC
** *
12637155 CAACCGAAGAGGCATAATGCGTAAGCCGAGGATTGACCCGGTCCCCCTCTGCATGCTGCCTGTCC
66 CAACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCTGTCC
* ** *
12637220 CACTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCCGGTCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
12637285 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATTCGCAAGTCGGGGATCGG
196 CCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGTCGGGGATCAG
* *
12637350 CTCGATCCCCCCTACGTGCTACTGATCCTGCTGCCGCAACCCTCGATCTAGT-TCGATCTTAGAC
261 CTCGATCCCCCCTACGTGCTACTGATCCTGCTGCCGCAACCCTCGATCCAATCT-GATCTTAGAC
*
12637414 TGGGAATGAACTACGTATG
325 TGGCAATGAACTACGTATG
* * *
12637433 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGCGTGCTCAGC
* * *
12637498 CAACTTG-AGAGGCATAATGCGTAAGCCGGGGATCAACCCAGTCCCCCTCTGCATGCTGTC-GAT
66 CAAC-CGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCTG-T
* * ** **
12637561 CCCGCTGTCGATCTTGTCCCTCGGTCCGGTCAGGGCTTAGACATGGAATGAACTCTGTATGCCTA
129 CCCACTG-CCA-C--AACCCTCGGTCCGGTCAGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * *
12637626 AGCCAACCCACGAAACGAGCGTGCGGGCGTTCAACCGGTTGGAGAGGTATAATGCGCAAGTCGGG
190 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGTCGGG
* * * *
12637691 GATCA-ATCTGATCCCCCCTACGTGCT-GTAGATCCTGCTGTCGTAACCCTCGATCCAATCTGAT
255 GATCAGCTC-GATCCCCCCTACGTGCTACT-GATCCTGCTGCCGCAACCCTCGATCCAATCTGAT
*
12637754 CTTATACTGGCAATGAACT
318 CTTAGACTGGCAATGAACT
12637773 CCATATGCAT
Statistics
Matches: 290, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
342 1 0.00
343 115 0.40
344 3 0.01
345 1 0.00
346 3 0.01
347 166 0.57
348 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGCGTGCTCAGC
CAACCGAAGAGGCATAATGCGTAAGCCGAGGATCAACCCAGTCCCCCTCTGCATGCTGCCTGTCC
CACTGCCACAACCCTCGGTCCGGTCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGTCGGGGATCAG
CTCGATCCCCCCTACGTGCTACTGATCCTGCTGCCGCAACCCTCGATCCAATCTGATCTTAGACT
GGCAATGAACTACGTATG
Found at i:12638112 original size:26 final size:26
Alignment explanation
Indices: 12638071--12638123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12638061 CTAGTTCGAT
12638071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12638097 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
12638123 C
1 C
12638124 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12638787 original size:26 final size:26
Alignment explanation
Indices: 12638757--12638808 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12638747 TCGGTTCGAT
*
12638757 CTTAGACT-GAGAATGAATTTCGTATG
1 CTTAGACTAG-GAATGAACTTCGTATG
*
12638783 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
12638809 TTGAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12639464 original size:26 final size:26
Alignment explanation
Indices: 12639428--12639480 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12639418 CCGATCCGAT
*
12639428 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12639454 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12639480 C
1 C
12639481 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12639820 original size:26 final size:26
Alignment explanation
Indices: 12639782--12639834 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12639772 CCGGTCCAAT
*
12639782 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
12639808 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
12639834 C
1 C
12639835 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:12640617 original size:159 final size:158
Alignment explanation
Indices: 12640330--12640820 Score: 408
Period size: 159 Copynumber: 3.1 Consensus size: 158
12640320 TGCTTAGAAA
* ** * * * * *
12640330 TGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGATCAG
1 TGGAATGAACTTC-GTACGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTTAGCCAACCGG
* * * * * *
12640394 AGAGGCAGAATGCACAAGCCAGGGATC-GACCC-GATCCCTCCCTGCGTGCTGTCTATCTCACTG
65 AGAGGCA-AATGCGCAAGCCGGGGATCAG-CCCGGTTCCCT-CCTGCGTGCTGTCAATCCCGCTG
12640457 CCGCAACCCTTGGTCTGGTCTGATCTTAGACT
127 CCGCAACCCTTGGTCTGGTCTGATCTTAGACT
* *
12640489 TGGAATGAACTTCGTACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCG-TTGAGCCAACCGG
1 TGGAATGAACTTCGTACGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTT-AGCCAACCGG
* **
12640553 AGATGCATAATAG-GCAAGCCGGGGATCAGCTTGG-TCCCTCTCTGCGTGCTGTCAATCCCGCTG
65 AGAGGCA-AAT-GCGCAAGCCGGGGATCAGCCCGGTTCCCTC-CTGCGTGCTGTCAATCCCGCTG
* * * * ** *
12640616 CCACAACCCTCGGTC-CGACTGGGGCTTAGACA
127 CCGCAACCCTTGGTCTGGTCT-GATCTTAGACT
* * * * ** * **
12640648 TGGAATGGACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTTAGCCGGCCGGA
1 TGGAATGAACTTCGTACGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTTAGCCAACCGGA
* * ** * * *
12640713 GAGGTAAATGCGTAAGCCGGGGATTGGCCCGGTTCCC-CCCGCGTGCTGTCGATCCTGCTGCCGC
66 GAGGCAAATGCGCAAGCCGGGGATCAGCCCGGTTCCCTCCTGCGTGCTGTCAATCCCGCTGCCGC
* * *
12640777 AACCTTTGAT-TCGGTCCGATCTTAGA-T
131 AACCCTTGGTCT-GGTCTGATCTTAGACT
12640804 TGGGAATGAACTTCGTA
1 T-GGAATGAACTTCGTA
12640821 TGCTTAGACT
Statistics
Matches: 261, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 49 0.19
158 28 0.11
159 176 0.67
160 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TGGAATGAACTTCGTACGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTTAGCCAACCGGA
GAGGCAAATGCGCAAGCCGGGGATCAGCCCGGTTCCCTCCTGCGTGCTGTCAATCCCGCTGCCGC
AACCCTTGGTCTGGTCTGATCTTAGACT
Found at i:12640621 original size:515 final size:513
Alignment explanation
Indices: 12639750--12640752 Score: 1326
Period size: 515 Copynumber: 2.0 Consensus size: 513
12639740 GTGCTGCCGA
* * * * * *
12639750 TCCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAAATCTGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAAATCCGTATGCTTAGAA
* * * * *
12639815 ATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGCGTGAGGGCACTCAGTGGGTCGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGTCGATCAG
* * * * ** * *
12639880 AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCTTTCTGTGTCCTGTCGATTCTACTGTCG
131 AGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCTCCCTGCGTCCTGTCGATTCTACTGCCG
* * * * *
12639945 CAACCCTAGGTCTGGTCTGATCTTAGGCTGGGAATGATCTTCGTATGCCTAAGTCAACCCACGAA
196 CAACCCTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAACCCACAAA
* * * * *
12640010 ATGATCGTACGGGCGTTGAACCGACCAAAAAAGCATAATCCGCATGCCGGGGATTAGCTCAGTCC
261 ATGAGCGTACGGGCGTTGAACCAACCAAAAAAGCATAATACGCAAGCCGGGGATCAGCTCAGTCC
** * **
12640075 CCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCATCGATTCGGTTGGGGCTTAGACATGGAATC
326 CCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATGGAATC
* *
12640140 AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGGCGCTCAGCTGACCGGAGAGGTA
391 AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGC-GGGCGCTCAGCCGACCGGAGAGGTA
*
12640205 GAATGCACAAGTCGGGGATCGGCCCGG-TCCCCCCTGCCTGCTACCCATCCTACTGTTGG
455 -AATGCACAAGCCGGGGATCGGCCCGGTTCCCCCCTGCCTGCTACCCATCCTACTGTTGG
* *
12640264 TCCTGCTGCTACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGAA
1 TCCTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAAATCCGTATGCTTAGAA
* ** * * *
12640329 ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGATCAG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGTCGATCAG
* *
12640394 AGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCTCCCTGCGTGCTGTCTA-TCTCACTGC
131 AGAGGCAGAATGCACAAGCCAGGGATCGACCCGAT-CCTCCCTGCGTCCTGTCGATTCT-ACTGC
* *
12640458 CGCAACCCTTGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCGTACGCCTAAGCCAACCCACA
194 CGCAACCCTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAACCCACA
* * ** * * * **
12640523 AAATGAGCGTGCGGGCGTTGAGCCAACCGGAGATGCATAATAGGCAAGCCGGGGATCAGCTTGGT
259 AAATGAGCGTACGGGCGTTGAACCAACCAAAAAAGCATAATACGCAAGCCGGGGATCAGCTCAGT
* * * *
12640588 CCCTCTCTGCGTGCTGTCAATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAA
324 CCCCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATGGAA
** * * *
12640653 TGGACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTTAGCCGGCCGGAGAGGT
389 TCAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGT
** *
12640718 AAATGCGTAAGCCGGGGATTGGCCCGGTTCCCCCC
454 AAATGCACAAGCCGGGGATCGGCCCGGTTCCCCCC
12640753 GCGTGCTGTC
Statistics
Matches: 416, Mismatches: 70, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
513 22 0.05
514 174 0.42
515 220 0.53
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (513 bp):
TCCTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAAATCCGTATGCTTAGAA
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGTCGATCAG
AGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCTCCCTGCGTCCTGTCGATTCTACTGCCG
CAACCCTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAACCCACAAA
ATGAGCGTACGGGCGTTGAACCAACCAAAAAAGCATAATACGCAAGCCGGGGATCAGCTCAGTCC
CCCTCTGCGTGCTGCCAATCCCGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATGGAATC
AACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGTAA
ATGCACAAGCCGGGGATCGGCCCGGTTCCCCCCTGCCTGCTACCCATCCTACTGTTGG
Found at i:12640826 original size:26 final size:26
Alignment explanation
Indices: 12640797--12640847 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12640787 TCGGTCCGAT
* *
12640797 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12640823 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12640848 ACCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12644637 original size:26 final size:26
Alignment explanation
Indices: 12644608--12644660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12644598 CCTGTTCGAT
*
12644608 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12644634 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12644660 C
1 C
12644661 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12645023 original size:26 final size:26
Alignment explanation
Indices: 12644973--12645025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12644963 CCGGTCCGAT
**
12644973 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12644999 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
12645025 C
1 C
12645026 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12645391 original size:157 final size:157
Alignment explanation
Indices: 12644998--12645497 Score: 440
Period size: 157 Copynumber: 3.2 Consensus size: 157
12644988 AACTTTGTAT
* * ** ** *
12644998 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACTCGTGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
**
12645063 CC-GACTGGAGAGGCAGAATGCGCAAGCTGGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGAC-GGAGAGGCAGAATGCGCAAGCCAGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* ** *
12645127 TACTGCTGCAACCCTCAATTCGGTCTGA
130 CACTGCCACAACCCTCAATTCGATCTGA
* * * ** *
12645155 TCTTAGAC-TGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAATGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
12645219 GCTGGCCGGAAAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCTTCTCTGCGTGCTGTCGAT
65 GCCGGACGGAGAGGCAGAATGCGCAAGCCAGGGAT-GGCCCGATCC-CCCCTGCGTGCTGTCGAT
** * *
12645284 CCCGTTGCCACAACCCTCGA-TC-AT-TGGG
128 CCCACTGCCACAACCCTCAATTCGATCT-GA
* * * * *
12645312 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** ** *
12645377 CCGGTCGGAGAGGCAGAATGCGCAAGCC-GAGGATAGGCTTGGGCCCCCATAGCGTGCTGTCGAT
66 CCGGACGGAGAGGCAGAATGCGCAAGCCAG-GGAT-GGCCCGATCCCCCCT-GCGTGCTGTCGAT
** * * *
12645441 CTTACTGCCGCAACCCTCGA-TCTGGTCTGA
128 CCCACTGCCACAACCCTCAATTC-GATCTGA
*
12645471 TCTTAGAC-TGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
12645498 TTAGACATGG
Statistics
Matches: 270, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 192 0.71
158 33 0.12
159 39 0.14
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGACGGAGAGGCAGAATGCGCAAGCCAGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCCC
ACTGCCACAACCCTCAATTCGATCTGA
Found at i:12645511 original size:26 final size:25
Alignment explanation
Indices: 12645472--12645523 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
12645462 CTGGTCTGAT
12645472 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
12645497 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
12645523 C
1 C
12645524 CTAATCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:12645670 original size:184 final size:184
Alignment explanation
Indices: 12645312--12645681 Score: 460
Period size: 184 Copynumber: 2.0 Consensus size: 184
12645302 GATCATTGGG
* * * * *
12645312 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACACAA
* * ***
12645377 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCTTGGGCCCCCATAGCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGACAGACCCAGGCCCCCATAGCGTGCTGTCGATC
* * ** **
12645442 TTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAATGAACTCCGTAT
131 CTACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGAATGAACTCCGTAT
* * * *
12645496 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCACACAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACACAA
* * *
12645561 CCTGTCGGAGAGGCAGAATGCGCAAGCC-AGGGACCGACCCAGTCCCCTC-T-GCGTGCTGTCGA
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGACAGACCCAGGCCCC-CATAGCGTGCTGTCGA
*
12645623 TCCTGCTACCGCAACCCTC-AGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 TCCTACTACCGCAACCCTCGA-TCCAGTCCAATCTTAGACT-GGAATGAACTCCGTAT
12645680 GC
1 GC
12645682 CTAACTCAAC
Statistics
Matches: 158, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
182 1 0.01
183 44 0.28
184 112 0.71
185 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACACAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGACAGACCCAGGCCCCCATAGCGTGCTGTCGATC
CTACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGAATGAACTCCGTAT
Found at i:12645759 original size:499 final size:498
Alignment explanation
Indices: 12644946--12646055 Score: 1360
Period size: 499 Copynumber: 2.2 Consensus size: 498
12644936 GCTGGTCCTG
* * **
12644946 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTTTGTATGCTTAGACATGGA
1 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCTTAGACATGGA
* * ** * ** *
12645011 ATGAACTCCGTATGCCTAAGGCAACTCGTGAAACAAGCGTGCGGGTGCTCAGCCGACTGGAGAGG
65 ATGAACTCCGTATGCCTAA-TCAACCCACGAAACGAGCGTGCGGGCACACAGCCGACTGGAGAGG
** * * * *
12645076 CAGAATGCGCAAGCTGGGGATGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCC
129 CAGAATGCGCAAGCCAGGGACGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCC
* * ** * * *
12645141 TCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAATGAGC
194 TCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGC
* * * * * *
12645206 GTGCGGGCATTGAGCTGGCCGGAAAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCTTCTCT
259 ATGCGGGCATTGAGCCGGCCGGAAAGGCATAATGCGCAAGCCAGGGACCGGCCCGATCATCCTCT
* * * ** *
12645271 GCGTGCTGTCGATCCCGTTGCCACAACCCTCGAT-C-ATTGGGGCTTAGACATGGAATGAACTCC
324 ACATGCTGCCGATCCCACTGCCACAACCCTCAATCCGATTGGGGCTTAGACATGGAATGAACTCC
* *
12645334 CTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTCAA-CCGG-TCGGAGAGGCAGAATG
389 CTATGCCTAAGCCAACCCACAAAACGGGTATGCGGGCGCT-AAGCCGGCT-GGAGAGGCAGAATG
* ** * ** *
12645397 CGCAAGCCGAGGATAGGCTTGGGCCC-CCATAGCGTGCTGTC-GATCTT
452 CGCAAGCCGAGGATAGACCCGAGCCCTCC-T-GCGTGCTACCAAATCTT
* *
12645444 ACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGA
1 -CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGA
*
12645509 ATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCACACAGCCTGTC-GGAGAG
65 ATGAACTCCGTATGCCTAAT-CAACCCACGAAACGAGCGTGCGGGCACACAGCC-GACTGGAGAG
* *
12645573 GCAGAATGCGCAAGCCAGGGACCGACCC-AGTCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAA
128 GCAGAATGCGCAAGCCAGGGA-CGACCCGA-TCCCCCCTGCGTGCTGTCGATCCTACTACCGCAA
*
12645637 CCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATG
191 CCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATG
* * * *
12645702 AGCATTCGGGCATTGAGCCGGCC-GAAGAGGTATAATGCGCAAGCCGGGGACCGGCCCGGTCATC
256 AGCATGCGGGCATTGAGCCGGCCGGAA-AGGCATAATGCGCAAGCCAGGGACCGGCCCGATCATC
* * *
12645766 CTCTACATGCTGCCGGTCCCACTGCTACAACCCTCAATCCGGTTGGGGCTTAGACATGGAATGAA
320 CTCTACATGCTGCCGATCCCACTGCCACAACCCTCAATCCGATTGGGGCTTAGACATGGAATGAA
* * *
12645831 CTCCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGGGTGCTAAGCTGGCTGGAGAGGCAGAA
385 CTCCCTATGCCTAAGCCAACCCACAAAACGGGTATGCGGGCGCTAAGCCGGCTGGAGAGGCAGAA
* * * *
12645896 TGCGTAAGCTGAGGATCGACCCGATCCCTCCTGCGTGCTACCAAATCTT
450 TGCGCAAGCCGAGGATAGACCCGAGCCCTCCTGCGTGCTACCAAATCTT
* ** *
12645945 CTGTCGCAACCCTCGGTCCAAT-TCGATCTTAGACTGGAATGAACTCCATATGCTTAGAC-TGGG
1 CTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGAATGAACTCCGTATGCTTAGACAT-GG
*
12646008 GATGAACTTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
64 AATGAAC-TCCGTATGCCTAA-TCAACCCACGAAACGAGCGTGCGGGC
12646056 GCTCAGCCAG
Statistics
Matches: 523, Mismatches: 73, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
498 99 0.19
499 208 0.40
500 70 0.13
501 142 0.27
502 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (498 bp):
CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAA
TGAACTCCGTATGCCTAATCAACCCACGAAACGAGCGTGCGGGCACACAGCCGACTGGAGAGGCA
GAATGCGCAAGCCAGGGACGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTC
AATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCAT
GCGGGCATTGAGCCGGCCGGAAAGGCATAATGCGCAAGCCAGGGACCGGCCCGATCATCCTCTAC
ATGCTGCCGATCCCACTGCCACAACCCTCAATCCGATTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCACAAAACGGGTATGCGGGCGCTAAGCCGGCTGGAGAGGCAGAATGCGCA
AGCCGAGGATAGACCCGAGCCCTCCTGCGTGCTACCAAATCTT
Found at i:12645898 original size:159 final size:156
Alignment explanation
Indices: 12645496--12645904 Score: 390
Period size: 159 Copynumber: 2.6 Consensus size: 156
12645486 AACTCCGTAT
*
12645496 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCAC-ACA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-CCAACCCACGAAACGAGCATGCGGGCACTA-A
* * * *
12645560 GCCTGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTCTGCGTGCTGTCGATC
64 G-CTGGCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTCTACATGCTGCCGATC
** * *
12645625 CTGCTACCGCAACCCTCAGTCCAGTCCAA
128 CCACTACCACAACCCTCAATCCAGTCCAA
* * * * * *
12645654 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAC-CAACCCACGAAACGAGCATGCGGGCACTAA
* * * * * * * * *
12645718 GCCGGCCGAAGAGGTATAATGCGCAAGCCGGGGACCGGCCCGGTCATCCTCTACATGCTGCCGGT
64 GCTGG-CGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTC-CCCTCTACATGCTGCCGAT
* * * ****
12645783 CCCACTGCTACAACCCTCAATCCGGTTGGG
127 CCCACTACCACAACCCTCAATCCAGTCCAA
* * * **
12645813 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-CCAACCCACGAAACGAGCATGCGGGCACTAAG
*
12645878 CTGGCTGGAGAGGCAGAATGCGTAAGC
65 CTGGC-GGAGAGGCAGAATGCGCAAGC
12645905 TGAGGATCGA
Statistics
Matches: 196, Mismatches: 47, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 87 0.44
159 103 0.53
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCACGAAACGAGCATGCGGGCACTAAGC
TGGCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCTCTACATGCTGCCGATCCCA
CTACCACAACCCTCAATCCAGTCCAA
Found at i:12646000 original size:25 final size:27
Alignment explanation
Indices: 12645972--12646024 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 27
12645962 CCAATTCGAT
12645972 CTTAGACT-GGAATGAAC-TCCATATG
1 CTTAGACTGGGAATGAACTTCCATATG
* *
12645997 CTTAGACTGGGGATGAACTTCCGTATG
1 CTTAGACTGGGAATGAACTTCCATATG
12646024 C
1 C
12646025 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 8 0.33
27 8 0.33
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTTCCATATG
Found at i:12646740 original size:343 final size:340
Alignment explanation
Indices: 12645655--12646752 Score: 958
Period size: 343 Copynumber: 3.2 Consensus size: 340
12645645 CCAGTCCAAT
* * * * * *
12645655 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGCATTCGGGC-ATTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTT-AG
* * * * * * * * *
12645719 CCGGCCGAAGAGGTATAATGCGCAAGCCGGGGACCGGCCCGGTCATCCTCTACATGCTGCCGGTC
65 CCAGTCGGAGAGGCATAATGCGCAAG-CGGGGATCGACCCGGTCCTCCTCTGCGTGCTGCCGGTC
* * *
12645784 CCACTGCTACAACCCTCAATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
12645849 ACCCACGAAACGGGTA-TGCGGGTGCTAAGCTGGCTGGAGAGGCAGAATGCGT-AAGCTGAGGAT
194 ACCCACGAAACGGG-AGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGC-TCAAGCTGAGGAT
* * * * * * *
12645912 CGACCCGATCCCTCCTGCGTGCTACCAAAT-CTTCTGTCGCAACCCTCGGTCCAATTCGATCTTA
257 CGACCCGATCCCCCCTGCGTGCT-GCAGATCCTACTGTCGTAACCCTCGGTCCAATTCAATCGTA
*
12645976 GACTGGAATGAACTCCATATG
321 GACTGGAATGAACT-CGTATG
*
12645997 CTTAGACTGGGGATGAACTTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT---
* * ** *
12646062 CCAGCCGAAGAGGCTGGCCTGAGAGGCATAATGCATAAGCTGGGGATCTACCCGGTCCTCCTCTG
62 -TAGCC----A-G-T---CGGAGAGGCATAATGCGCAAGC-GGGGATCGACCCGGTCCTCCTCTG
* * * * *
12646127 CGTGTTGTCGATCCTACTACCGATCCTACTGCTCGCAACCCTCGGTCCGGTTGGGGCTTAGACAT
116 CGTGCTGCCG---GT-C--CCG------CTGC-CACAACCCTCAGTCCGGTTGGGGCTTAGACAT
* * *** * * * *
12646192 GGAATGAACTCCGTATGCCTAAGCCGACCCACGAAATAAGCGTGCGGGCGCTCAGTCGGTCGAAG
168 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * *
12646257 AGGCAGAATGCGCAAG-TCGAGGATCGGCTCGGTCCCCCCTTACGTGCTGCTGATCCTACTGTTG
233 AGGCAGAATGCTCAAGCT-GAGGATCGACCCGATCCCCCC-TGCGTGCTGCAGATCCTACTG-TC
* * * ** **
12646321 GT-ACTGCT-AGTGCAA--CCCTCG--GTTTGG--T----TCG-AT-
295 GTAAC-CCTCGGTCCAATTCAATCGTAGACTGGAATGAACTCGTATG
* *
12646354 TTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
* *
12646419 CAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGGTCC
66 CAGTCGGAGAGGCATAATGCGCAAG-CGGGGATCGACCCGGTCCTCCTCTGCGTGCTGCCGGTCC
* * * *
12646484 CGCTGCCACAAACCTCAGTCCGGCTGGGGCTTAGACATAGAATAAACTCCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
12646549 CCCATGAAACGGGAGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCTCAAGCTGGGGATCGA
195 CCCACGAAACGGGAGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCTCAAGCTGAGGATCGA
* *
12646614 CCCGATCCCCCCTGCGTGCTGTC-GATCCTGCTGTCGTAACCCTCGGTCCAATTTAATCGTAGAC
260 CCCGATCCCCCCTGCGTGCTG-CAGATCCTACTGTCGTAACCCTCGGTCCAATTCAATCGTAGAC
12646678 TAGGAATGAACTCTGTATG
324 T-GGAATGAACTC-GTATG
** *
12646697 CTTAGACTGGGGTTGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
12646753 ATGCTCTGCC
Statistics
Matches: 587, Mismatches: 114, Indels: 109
0.72 0.14 0.13
Matches are distributed among these distances:
328 5 0.01
329 24 0.04
330 113 0.19
331 8 0.01
333 2 0.00
334 2 0.00
336 1 0.00
337 3 0.01
339 1 0.00
340 3 0.01
341 1 0.00
342 19 0.03
343 133 0.23
344 2 0.00
346 1 0.00
347 5 0.01
348 1 0.00
352 5 0.01
355 1 0.00
356 85 0.14
357 15 0.03
358 2 0.00
359 2 0.00
360 2 0.00
362 2 0.00
364 1 0.00
366 4 0.01
368 8 0.01
369 113 0.19
370 19 0.03
371 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (340 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
CAGTCGGAGAGGCATAATGCGCAAGCGGGGATCGACCCGGTCCTCCTCTGCGTGCTGCCGGTCCC
GCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGAGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCTCAAGCTGAGGATCGAC
CCGATCCCCCCTGCGTGCTGCAGATCCTACTGTCGTAACCCTCGGTCCAATTCAATCGTAGACTG
GAATGAACTCGTATG
Found at i:12648419 original size:26 final size:26
Alignment explanation
Indices: 12648368--12648420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12648358 CCGGTCAGAT
*
12648368 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12648394 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
12648420 C
1 C
12648421 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12648728 original size:159 final size:157
Alignment explanation
Indices: 12648393--12648755 Score: 374
Period size: 157 Copynumber: 2.3 Consensus size: 157
12648383 AACTTCATAT
* * * *
12648393 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAA
* * * * * * * * *
12648458 TCGACCTGAGAGGTAGAATGCGCAAGCCGGGGACCGGCCTGGTGCCCCTGCGTGCTATCGATCCT
66 CCGACCTGAGAAGCAGAATACGCAAGCCGAGGACCGACCCGGTCCCCCTGCGTGCTATAGATCCT
* *
12648523 ACTGCCACAACCCTCGGTCCGGTCTGA
131 ACTGCCACAAACCTCGGTCCGGACTGA
* * * * * *
12648550 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCA
* * * * * *
12648614 ACCG-GCTGGAGAAGCATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTAGG
65 ACCGACCT-GAGAAGCAGAATACGCAAGCCGAGGACCGACCCGGT-CCCC-CTGCGTGCTATAGA
*
12648678 T-CTCACTGCCACAAACCTCGGTCC-GACTGGG
127 TCCT-ACTGCCACAAACCTCGGTCCGGACT-GA
* *
12648709 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
12648756 GGGTGTGCGG
Statistics
Matches: 165, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.02
157 82 0.50
158 8 0.05
159 71 0.43
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAA
CCGACCTGAGAAGCAGAATACGCAAGCCGAGGACCGACCCGGTCCCCCTGCGTGCTATAGATCCT
ACTGCCACAAACCTCGGTCCGGACTGA
Found at i:12648794 original size:159 final size:155
Alignment explanation
Indices: 12648393--12648800 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 155
12648383 AACTTCATAT
* *
12648393 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
12648458 TCGACCTGAGAGGTAGAATGCGCAAGCCGGGGACCGGCCTGGTGCCCCTGCGTGCTATCGATCCT
66 CCG-CC-GAGAGGCAGAATACGCAAGCCGAGGACCGACCCGGTCCCCCTGCGTGCTATAGATCCT
* *
12648523 ACTGCCACAACCCTCGGTCCGGTCTGA
129 ACTGCCACAAACCTCGGTCCGGACTGA
* * * * * * * *
12648550 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
12648614 ACCGGCTGGAGAAGCATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTAGGT
65 ACC-GC-CGAGAGGCAGAATACGCAAGCCGAGGACCGACCCGGT-CCCC-CTGCGTGCTATAGAT
*
12648679 -CTCACTGCCACAAACCTCGGTCC-GACTGGG
126 CCT-ACTGCCACAAACCTCGGTCCGGACT-GA
* * * * **
12648709 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTTCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
*
12648774 CCAGCCGAAGAGGCAGAATACGTAAGC
66 CC-GCCG-AGAGGCAGAATACGCAAGC
12648801 TAGGGATCAA
Statistics
Matches: 194, Mismatches: 48, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.01
157 82 0.42
158 10 0.05
159 100 0.52
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGCCGAGAGGCAGAATACGCAAGCCGAGGACCGACCCGGTCCCCCTGCGTGCTATAGATCCTAC
TGCCACAAACCTCGGTCCGGACTGA
Found at i:12650019 original size:26 final size:26
Alignment explanation
Indices: 12649979--12650029 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12649969 CGATCCGATC
12649979 TTAGACTAGGAATGAACTCCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
* * *
12650005 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
12650030 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:12650734 original size:26 final size:26
Alignment explanation
Indices: 12650696--12650748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12650686 GGCTCAAACT
*
12650696 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12650722 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12650748 C
1 C
12650749 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12651014 original size:158 final size:158
Alignment explanation
Indices: 12650721--12651029 Score: 451
Period size: 158 Copynumber: 2.0 Consensus size: 158
12650711 AACTCTGTAT
* * *
12650721 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAGT
1 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAAT
* * * * * *
12650786 CGGCCGGATAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGGTCT
66 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCT
12650851 CGCTGCCGCAACCCTCAGTCTGGCTGGG
131 CGCTGCCGCAACCCTCAGTCTGGCTGGG
* * *
12650879 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCGCTCAA
* *
12650944 TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCATGCTACCGATC
65 TCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATC
*
12651008 -CTGCTGCCGCAACCCTCGGTCT
130 TC-GCTGCCGCAACCCTCAGTCT
12651030 AGTTTGATCT
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
157 1 0.01
158 73 0.54
159 60 0.45
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAAT
CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCT
CGCTGCCGCAACCCTCAGTCTGGCTGGG
Found at i:12651052 original size:158 final size:158
Alignment explanation
Indices: 12650721--12651064 Score: 442
Period size: 158 Copynumber: 2.2 Consensus size: 158
12650711 AACTCTGTAT
* *
12650721 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAGT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAAT
* * * * * *
12650786 CGGCCGGATAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGGTCT
66 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCT
* *
12650851 CGCTGCCGCAACCCTCAGTCTGGCTGGG
131 CGCTGCCGCAACCCTCAGTCTAGCTGGA
* * * * *
12650879 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCGCTCAA
* *
12650944 TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCATGCTACCGATC
65 TCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATC
* * *
12651008 -CTGCTGCCGCAACCCTCGGTCTAGTTTGA
130 TC-GCTGCCGCAACCCTCAGTCTAGCTGGA
* *
12651037 TCTTAGA-TTGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
12651065 TTAGACTGGG
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 2 0.01
158 98 0.61
159 60 0.38
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCGCTCAAT
CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCT
CGCTGCCGCAACCCTCAGTCTAGCTGGA
Found at i:12651074 original size:26 final size:26
Alignment explanation
Indices: 12651038--12651090 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12651028 CTAGTTTGAT
*
12651038 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
** *
12651064 CTTAGACTGGGGTTGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
12651090 C
1 C
12651091 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12651216 original size:12 final size:12
Alignment explanation
Indices: 12651201--12651225 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12651191 GCATGCTACC
12651201 GATCCTGCTGCT
1 GATCCTGCTGCT
12651213 GATCCTGCTGCT
1 GATCCTGCTGCT
12651225 G
1 G
12651226 TAACCCTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.28, T:0.32
Consensus pattern (12 bp):
GATCCTGCTGCT
Found at i:12651405 original size:196 final size:196
Alignment explanation
Indices: 12651148--12651531 Score: 538
Period size: 196 Copynumber: 2.0 Consensus size: 196
12651138 AGGTCGGCCG
* * * *
12651148 GAGAGGCTAAATACGCAAGCTGGGGATCAACTCGATCCCCTCTGCATGCTACCGATCCTGCTGCT
1 GAGAGGCTAAATACGCAAGCCGGGGACCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTGCT
* *
12651213 GATCCTGCTG-CTGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTA
66 GATCCTGCTGTC-ATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTA
* *
12651277 GACATGGAATGAACTTCGTATGCCTAAGCCAAGCCACAAAACGAGCATGCGGGCACTCAACCGGC
130 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAACCGGC
12651342 TA
195 TA
* ** *
12651344 GAGAGGC-AGAATTCGCAAGCCGGGGACCAACCCGATCCCCCCTGTGTGCTGCCGATCCTGCTGC
1 GAGAGGCTA-AATACGCAAGCCGGGGACCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTGC
* * * * **
12651408 TGGTCTTGCTGTCATAACCCTTGATCCGGTCTGATCTTAGATTGGGAATGAGCTCTGTATGCTTA
65 TGATCCTGCTGTCATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTA
* ** *
12651473 GACATGGAATGAACTTCGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCACTCA
130 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCA
12651532 GTCAACCGGA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
195 1 0.01
196 162 0.99
197 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (196 bp):
GAGAGGCTAAATACGCAAGCCGGGGACCAACCCGATCCCCCCTGCATGCTACCGATCCTGCTGCT
GATCCTGCTGTCATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAG
ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAACCGGCT
A
Found at i:12651582 original size:196 final size:196
Alignment explanation
Indices: 12651148--12651605 Score: 495
Period size: 196 Copynumber: 2.3 Consensus size: 196
12651138 AGGTCGGCCG
* * * * * * * * * * *
12651148 GAGAGGCTAAATACGCAAGCTGGGGATCAACTCGATCCCCTCTGCATGCTACCGATCCTGCTGCT
1 GAGAGGCAAAATGCGCAAGCCGAGGACCAACCCCAACCCCCCTGCGTGCTGCCGATCCTGCTGCT
* *
12651213 GATCCTGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAG
66 GATCCTGCTGCTATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAG
* * ** *
12651278 ACATGGAATGAACTTCGTATGCCTAAGCCAAGCCACAAAACGAGCATGCGGGCACTCAACCGGCT
131 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAACCAACC
12651343 A
196 A
* * * * * *
12651344 GAGAGGCAGAATTCGCAAGCCGGGGACCAACCCGATCCCCCCTGTGTGCTGCCGATCCTGCTGCT
1 GAGAGGCAAAATGCGCAAGCCGAGGACCAACCCCAACCCCCCTGCGTGCTGCCGATCCTGCTGCT
* * * * **
12651409 GGTCTTGCTG-TCATAACCCTTGATCCGGTCTGATCTTAGATTGGGAATGAGCTCTGTATGCTTA
66 GATCCTGCTGCT-ATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTA
* ** * **
12651473 GACATGGAATGAACTTCGTTTGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAGTCAAC
130 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAACCAAC
*
12651538 CG
195 CA
* * * ** * * *
12651540 GAGAGGCAAAATGCGTAAGTCGAGGATCGGCCCCAACCCCCCTGCGTACTGTCGATCCTACTGCT
1 GAGAGGCAAAATGCGCAAGCCGAGGACCAACCCCAACCCCCCTGCGTGCTGCCGATCCTGCTGCT
12651605 G
66 G
12651606 CAACCCTCGG
Statistics
Matches: 217, Mismatches: 44, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
195 1 0.00
196 216 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
GAGAGGCAAAATGCGCAAGCCGAGGACCAACCCCAACCCCCCTGCGTGCTGCCGATCCTGCTGCT
GATCCTGCTGCTATAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAG
ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAACCAACC
A
Found at i:12652383 original size:26 final size:26
Alignment explanation
Indices: 12652345--12652397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12652335 GGCTCAAACT
*
12652345 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12652371 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12652397 C
1 C
12652398 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12652728 original size:26 final size:26
Alignment explanation
Indices: 12652688--12652738 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12652678 TGATCTGATC
* *
12652688 TTAGATTGGGAATGAACTCTATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
12652714 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
12652739 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:12654659 original size:26 final size:26
Alignment explanation
Indices: 12654618--12654668 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12654608 CTGATCTGAT
12654618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12654644 CTTAGACTGTGG-ATGAACTCCGTAT
1 CTTAGACTG-GGAATGAACTCCGTAT
12654669 CCCTAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12656566 original size:26 final size:26
Alignment explanation
Indices: 12656537--12656589 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12656527 CCGATTTGAT
12656537 CTTAGACT-GGGAATAAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
* *
12656563 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
12656589 C
1 C
12656590 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:12657240 original size:26 final size:26
Alignment explanation
Indices: 12657211--12657264 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
12657201 GGTTCGATCT
*
12657211 TAGACT-GGGAATGAACTCTGTACGCC
1 TAGACTAGGG-ATGAACTCCGTACGCC
*
12657237 TAGACTAGGGATGAACTCCGTATGCC
1 TAGACTAGGGATGAACTCCGTACGCC
12657263 TA
1 TA
12657265 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTACGCC
Found at i:12657925 original size:26 final size:26
Alignment explanation
Indices: 12657895--12657946 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12657885 TCGGTCCGAT
*
12657895 CTTAGACT-GAGAATGAATTTCGTATG
1 CTTAGACTAG-GAATGAACTTCGTATG
*
12657921 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
12657947 TCGAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12658423 original size:669 final size:670
Alignment explanation
Indices: 12656061--12658938 Score: 2785
Period size: 672 Copynumber: 4.3 Consensus size: 670
12656051 AACTCTGTTT
* *
12656061 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** * *
12656126 -TCGACTGGAGAGGTAGAATGCACAAGTCGAGGATCGACCCGGTCACCCCGGCATGCTGTCAATC
66 CT-GGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGAT-
* * * *
12656190 CTT-CTGTCACAACCCTCGGTTCGGTCCATATCTT-GTACTGGGAATCAACT-TCATATGCATAA
129 CTTACTGTCGCAACCCTCGG-TCAGTCCA-ATCTTAG-ACTGGGAATGAACTCT-GTATGCATAA
* * * * * *
12656252 GTCAACCCATGAAACGAGTGTGCGCGCGCTGAGCCAG-CCTAAGAGGCATAATGCGTAAGCC-GA
190 GTCAACCCATGAAACGAGCGTACGGGCACTGAG-CAGACCGAAGAGGCATAATGCGCAAGCCGGA
* * * ** * * * * *
12656315 GGATC-GACCGGTCCCCCTCTGCATGCTGCTTGTCCCACTACCACAACCCTTGGTCTGGCTAGGG
254 -GATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGG
* * * * *
12656379 CATAGACATGGAGTGAACTCCCCATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
318 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGC
* * * * * * *
12656444 CGGTCGGAGAGGTAGAATCTGC-AAGCCG-GGGATCGGCTTGGTCCCCCCTGCGTGCTG-CTGAT
383 CGGTCGGAGAGGCAGAA--TGCAAAGTCGAGGGACCGCCCT-ATCCCCCCTACGTGCTGTC-GAT
* * * * ** * * *
12656506 CCTACTGTCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACT
444 CCTACTGCCGCAACCCTAGTTTCGATCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACT
* * * ** * *
12656571 AGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACTGGA
509 AGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGCTGACCGGA
* * * * * * *
12656636 GAGGCATAATGCGTAAGCCAGGGATCAACCCT-GTCCCCCTCTGTGTGCTGTCGATCCCGCTGTC
574 GAGGCATAATACGCAAGCCGGGGATC-AGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGTC
* * * *
12656700 GGTCTTGTTGCCACAACCCTCGGTCCAACCGGG
638 GGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
* * *
12656733 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCACTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *** * * * *
12656797 ATCGGTTGGAGAGGCAGAATGCGCAAACCGGGGATC-AGTTTGATCCCTCTTACGTGTTGTAGAT
66 CT-GGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTACGTGCTGTCGAT
* * * * * *
12656861 CTTACT-ACTGTAACCCTCGATCCAATCTAATCTTAGACTGGCAATGAACTCTGTATGCATAAGT
129 CTTACTGTC-GCAACCCTCGGT-CAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGT
* * * *** * *
12656925 CAACCCACGAAATGAGCGTTCGGGTGTTGAGCCGACCGAAGAGGTATAATGCGCAAGCCAGG-GA
192 CAACCCATGAAACGAGCGTACGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGCC-GGAGA
* * * * * *
12656989 TCGGCCCGGTCCCCCTCTACGTACTACCGATCCTGCTGCCATAACCCTTGGTCCGATTGGGGCTT
256 TCGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTT
* * * *
12657054 AGACATGGAATGAACTCCCTATACCTAAGCCAACGCACGAAACGGGTGTACGGG-AGCTCAACCG
321 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCA-CTCAGCCG
* * *
12657118 GTTGGAGGGGCAAAATGCACAAGTC-AGGGACCGGCCCTATCCCCCCTACGTGCTGTCGATCCTA
385 GTCGGAGAGGCAGAATGCA-AAGTCGAGGGACC-GCCCTATCCCCCCTACGTGCTGTCGATCCTA
* * * * * * * *
12657182 CTGACGTAACCCTCAGTCT-GGTTCGATCTTAGACTGGGAATGAA-CTCTGTACGCCTAGACTAG
448 CTGCCGCAACCCT-AGTTTCGATCCGATCTTAGACTGGGAATGAATTTC-GTATGCTTAGACTAG
*
12657245 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTCCATCCAGCCGAAG
511 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACG-G-GC-CC-T-CAG-C--TG
* * * * * *
12657310 AGGCCGGCTGGAGAGGCATAATGCGCAAGTCGGGGATTAG-TTAGGTCCCCCTCTGCGTGTTGTC
568 A---C--C-GGAGAGGCATAATACGCAAGCCGGGGATCAGCCT-GGTCCCCCTCTGCGTGCTGCC
* ** * * *
12657374 GATCTCGA-TACCGATCCTGCTGCCACAACCCTCGGTCCGATTGCG
626 GATC-CCACTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
* ** *
12657419 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGCACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12657484 CTGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCACTACATGCTATCAATC
66 CTGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGATC
* * * * *
12657549 CTACTGCCAG-AACCCTTGGTCCAGTCAAATCTTAGACTAGGAATGAACTCTGTATGCATAAGTC
130 TTACTGTC-GCAACCCTCGGT-CAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * * * * * *
12657613 TACCCATAAAATGAGCGTACGGGCACTGAGCAGACCAAAGAGGCGTAATACGCAAGCTGAAGATC
193 AACCCATGAAACGAGCGTACGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGCCGGAGATC
* * * *
12657678 AGCCCGGTCCCCCTCTGCGTGCTACCGGTCCTGCTGCCACAACCCTTGATCTGACTGGGGCTTAG
258 GGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAG
* *
12657743 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGTCGGTG
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGCCGGTC
* * * * **
12657808 GGAGAGGCAGAATGCAAAGTCGA-GGATCAGCCCTGTCCCCCCTGCGTGCTGTCGATCTTGTTGC
388 GGAGAGGCAGAATGCAAAGTCGAGGGA-CCGCCCTATCCCCCCTACGTGCTGTCGATCCTACTGC
* * *
12657872 CGTAACCCTAGTTTCGGTCCGATCTTAGACTGAGAATGAATTTCGTATGCTTAGACTAGGGATGA
452 CGCAACCCTAGTTTCGATCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTAGGGATGA
* * * * *
12657937 ACTTCGTATGTCGAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGCTGGCCAGAGAGGCATA
517 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGCTGACCGGAGAGGCATA
* * * *
12658002 ATACGCAAGTCGGGTATCAGCCTGGT-CCCCTCTGCGTGCTACCGATCCCACTGTTGGTCCTGCT
582 ATACGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTGCT
*
12658066 GCCACAACCCTTGGTCCGACTGGG
647 GCCACAACCCTCGGTCCGACTGGG
* *
12658090 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12658155 CTGGCTGGAGAGGCAGAATGCGTAAGCCGAGAATCGACCCGTTCCCCCTTACGTGCTGTCGATCT
66 CTGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCT
* * * *
12658220 TGCTGTCGTAACCCTCGGTCTGTCCCATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
131 TACTGTCGCAACCCTCGGTCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
** * *** * *
12658285 CCATGAAACGAGCGTACGATCACTGAGCTGGTTGAAGAGGCATAATGCGTAAGCCGGAGATCGGT
196 CCATGAAACGAGCGTACGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGCCGGAGATCGGC
** * * *
12658350 CCAATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACA
261 CCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACA
* * ** * ** *
12658415 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGACCGAA
326 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGCCGGTCGGA
* * * * * *
12658480 GAGGCAGAATGCGCAAG-CTAGGGACCTGTCCAAT-CCCCCTACGTGCTGTCGATCCTGCTGCTG
391 GAGGCAGAATGC-AAAGTCGAGGGACC-GCCCTATCCCCCCTACGTGCTGTCGATCCTACTGCCG
* * * * *
12658543 CAACCATCG-GTCTGATCCAATCTTAGACTGGGAATGAACTTT-GTATGCTTAGACTGGGGATGA
454 CAACCCTAGTTTC-GATCCGATCTTAGACTGGGAATGAA-TTTCGTATGCTTAGACTAGGGATGA
* * * * ** * *
12658606 ACTCCGTATGCCTAAGTCAACCGATGAAATGAGCGTGCAGGTGCTCA-ATCGACCGAAGAGGCAT
517 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGCT-GACCGGAGAGGCAT
* * * *
12658670 AATACGTAAGCCGGGGATCAGAAC-GGTCCCCCTCTGCATGCTGCCGATCCCGCTGTCGGTCCTG
581 AATACGCAAGCCGGGGATCAG-CCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTG
* * * * *
12658734 CTACCATAACCCTCGGTCTGGCTAGG
645 CTGCCACAACCCTCGGTCCGACTGGG
* * * * **
12658760 GCTTAGACATGGAATGTACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCCGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
12658825 CCGG-TCAGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCCCTGCGTGCTGCCGATC
66 CTGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* * * *
12658889 CTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
130 TTACTGTCGCAACCCTCGGTCAG-TCCAATCTTAGACTGGGAATGAACTC
12658939 CATATGCTTA
Statistics
Matches: 1808, Mismatches: 339, Indels: 119
0.80 0.15 0.05
Matches are distributed among these distances:
668 3 0.00
669 364 0.20
670 228 0.13
671 258 0.14
672 376 0.21
673 9 0.00
674 1 0.00
675 2 0.00
676 1 0.00
677 3 0.00
678 2 0.00
680 3 0.00
681 3 0.00
682 1 0.00
683 3 0.00
684 3 0.00
685 6 0.00
686 293 0.16
687 246 0.14
688 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (670 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCT
TACTGTCGCAACCCTCGGTCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
CCATGAAACGAGCGTACGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGCCGGAGATCGGC
CCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGCCGGTCGGA
GAGGCAGAATGCAAAGTCGAGGGACCGCCCTATCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
ACCCTAGTTTCGATCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTAGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGCTGACCGGAGAGGCATAATAC
GCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCTGCTGCCA
CAACCCTCGGTCCGACTGGG
Found at i:12658481 original size:159 final size:158
Alignment explanation
Indices: 12658057--12658554 Score: 461
Period size: 157 Copynumber: 3.2 Consensus size: 158
12658047 TCCCACTGTT
*
12658057 GGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
1 GGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* * *
12658122 GCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCTGGAGAGGCAGAATGCGTAAGCC-GAG
66 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCTGAAGAGGCAGAATGCGTAAGCCGGAG
** ** *
12658186 AATCGACCCGTTCCCCCTTACGTGCTGTC
131 -ATCGGTCCAATCCCCCTTACGTGCTGCC
* * * ** * * **** ** *
12658215 GATCTTGCTGTCGTAACCCTCGGTCTGTC-CCATCTTAGAC-TGGGAATGAACTCTGTATGCATA
1 GGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTA
* * * * * * * *
12658278 AGTCAACCCATGAAACGAGCGTAC-GATCACTGAGCTGGTTGAAGAGGCATAATGCGTAAGCCGG
65 AGCCAACCCACGAAACGAGCGTGCGGGT-GCTCAGCTGGCTGAAGAGGCAGAATGCGTAAGCCGG
*
12658342 AGATCGGTCCAATCCCCCTCTGCGTGCTGCC
129 AGATCGGTCCAATCCCCCT-TACGTGCTGCC
* * *
12658373 GGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * * * *
12658438 GCCAACCCACAAAACGGGCGTGCGGGTGCTCAG-TCGACCGAAGAGGCAGAATGCGCAAGCTAGG
66 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCT-GGCTGAAGAGGCAGAATGCGTAAGC-CGG
* * *
12658502 -GACCTGTCCAATCCCCC-TACGTGCTGTC
129 AGATCGGTCCAATCCCCCTTACGTGCTGCC
* ** *
12658530 GATCCTGCTGCTGCAACCATCGGTC
1 GGTCCTGCTGCCACAACCCTCGGTC
12658555 TGATCCAATC
Statistics
Matches: 261, Mismatches: 70, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 2 0.01
157 116 0.44
158 55 0.21
159 83 0.32
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAA
GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCTGAAGAGGCAGAATGCGTAAGCCGGAG
ATCGGTCCAATCCCCCTTACGTGCTGCC
Found at i:12658614 original size:26 final size:26
Alignment explanation
Indices: 12658564--12658616 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12658554 CTGATCCAAT
**
12658564 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12658590 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12658616 C
1 C
12658617 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12658957 original size:26 final size:26
Alignment explanation
Indices: 12658919--12658971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12658909 CCGATCCGAT
12658919 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12658945 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12658971 C
1 C
12658972 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12659023 original size:355 final size:354
Alignment explanation
Indices: 12658367--12659042 Score: 876
Period size: 355 Copynumber: 1.9 Consensus size: 354
12658357 CCCTCTGCGT
* *
12658367 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * *
12658432 GCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAG
66 GCCTAAACCAACCCACAAAACGAGCGTGCCGATGCTCAGCCGACAGAAGAGGCAGAATGCGCAAG
* * *
12658497 CTAGGGACCTGTCCAATCCCCCTACGTGCTGTCGATCCTGCTGCTGCAACCATCGGTCTGATCCA
131 CCAGGGACCTGTCCAATCCCCCTACGTGCTGCCGATCCTGCTGCTGCAACCATCGGTCCGATCCA
*** * *
12658562 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
196 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * *
12658627 CGATGAAATGAGCGTGCAGGTGCTCAATCGACCGAAGAGGCATAATACGTAAGCCGGGGATCAGA
261 CGACAAAACGAACGTGCAGGCGCTCAATCGACCGAAGAGGCAGAATACGCAAACCGGGGATCAGA
12658692 ACGGTCCCCCTCTGCATGCTGCCGATCCC
326 ACGGTCCCCCTCTGCATGCTGCCGATCCC
* * * * * *
12658721 GCTGTCGGTCCTGCTACCATAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGTACTCCGTAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
** *
12658786 GCCTAAACCAACCCATGAAACGAGCGTGCCGATGCTCAGCCGGTCAG-AGAGGCAGAATGCGCAA
66 GCCTAAACCAACCCACAAAACGAGCGTGCCGATGCTCAGCC-GACAGAAGAGGCAGAATGCGCAA
* * * * *
12658850 GCCGGGGATC-GATCCGATCCCCCCTGCGTGCTGCCGATCCTGCTG-TCGCAACCCTCGGTCCGA
130 GCCAGGGACCTG-TCCAAT-CCCCCTACGTGCTGCCGATCCTGCTGCT-GCAACCATCGGTCCGA
*
12658913 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
192 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* * * *
12658977 CCAACCTACAAAACGAACGTG-AGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAACCGGGG
256 CCAACCGACAAAACGAACGTGCA-GGCGCTCAATCGACCGAAGAGGCAGAATACGCAAACCGGGG
12659041 AT
320 AT
12659043 TGGCTCGATC
Statistics
Matches: 273, Mismatches: 43, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
353 1 0.00
354 122 0.45
355 149 0.55
356 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAACCAACCCACAAAACGAGCGTGCCGATGCTCAGCCGACAGAAGAGGCAGAATGCGCAAG
CCAGGGACCTGTCCAATCCCCCTACGTGCTGCCGATCCTGCTGCTGCAACCATCGGTCCGATCCA
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACAAAACGAACGTGCAGGCGCTCAATCGACCGAAGAGGCAGAATACGCAAACCGGGGATCAGA
ACGGTCCCCCTCTGCATGCTGCCGATCCC
Found at i:12659082 original size:184 final size:184
Alignment explanation
Indices: 12658760--12659118 Score: 477
Period size: 184 Copynumber: 2.0 Consensus size: 184
12658750 TCTGGCTAGG
* ** * * *
12658760 GCTTAGACATGGAATGTACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCCGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAACGTGACGACGCTCAG
** *
12658825 CCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCGATCCGATCCCCCCTGCGTGCTGCCGATCC
* *
12658890 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 TACTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
12658944 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAACGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAACGTGACGACGCTCAG
* * * * * **
12659009 TCGACCGGAGAGGCAGAATGCGCAAACCGGGGATTG-GCTCGATCCCTCCTGCGTGCTGTTGATC
66 CCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCGATC-CGATCCCCCCTGCGTGCTGCCGATC
* * *
12659073 CTACTGTCGCAACCCTAGGTCTGGTCCGATCTTAGGCTGGGAATGA
130 CTACTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGA
12659119 TCTCTGTATG
Statistics
Matches: 149, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.01
184 148 0.99
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAACGTGACGACGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAACCGGGGATCGATCCGATCCCCCCTGCGTGCTGCCGATCC
TACTGTCGCAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:12660217 original size:159 final size:157
Alignment explanation
Indices: 12659768--12660228 Score: 495
Period size: 159 Copynumber: 2.9 Consensus size: 157
12659758 CCTGCTACTG
*
12659768 CAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
12659833 ACGAGCGTGCGGGCGCTCAG-TCGGTCGGAGAGGCAGAATGCACAAGCC-AGGGATCGGCCCGAT
65 ACGAGCGTGCGGGCGCTCAGCT-GGTCGGAGAGGCAGAATGCACAAGCCGA-GGATCGGCCC-AT
* * *
12659896 CCCTCCCTGC-A-TGCTATCGATCCTACTACCA
127 TCC-CCCT-CTAGTGCTGTCGATCCCACTACCA
* * *
12659927 CAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTACGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * ** * * * * * * *
12659992 ACGAGCGTACGGGCACTTAGCCAGTCGGAGATGCATAATACACAAGCGGGGGATCGGCTCAGTCC
65 ACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCATTCC
** *
12660057 CCCTCTATGTGCTGTC-AGTCCCGTTGCCA
130 CCCTCTA-GTGCTGTCGA-TCCCACTACCA
** *
12660086 CAACCCTCGGTCCGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* ** * *
12660150 AACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGAATCGACCCATTC
64 AACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCATTC
12660215 CCCC-CTACGTGCTG
129 CCCCTCTA-GTGCTG
12660229 CTGATCTTGC
Statistics
Matches: 247, Mismatches: 47, Indels: 17
0.79 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 15 0.06
159 225 0.91
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCATTCCC
CCTCTAGTGCTGTCGATCCCACTACCA
Found at i:12666947 original size:26 final size:26
Alignment explanation
Indices: 12666909--12666961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12666899 GGCTCAAAAT
**
12666909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
12666935 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
12666961 C
1 C
12666962 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:12667515 original size:26 final size:26
Alignment explanation
Indices: 12667479--12667531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12667469 TCAGTCTGAT
**
12667479 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
*
12667505 CTTAGACTGGGGACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
12667531 C
1 C
12667532 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:12668810 original size:26 final size:26
Alignment explanation
Indices: 12668778--12668830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12668768 CTGATTCAAT
* *
12668778 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12668804 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12668830 C
1 C
12668831 CTAAGCCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12669096 original size:26 final size:26
Alignment explanation
Indices: 12669055--12669107 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12669045 CTGATCCGAT
12669055 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12669081 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
12669107 C
1 C
12669108 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12669771 original size:26 final size:26
Alignment explanation
Indices: 12669742--12669794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12669732 CCGGTCTGAT
12669742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12669768 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12669794 C
1 C
12669795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12670142 original size:26 final size:26
Alignment explanation
Indices: 12670102--12670153 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12670092 TGATCCGATT
12670102 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
12670128 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
12670154 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:12670240 original size:359 final size:362
Alignment explanation
Indices: 12669559--12670245 Score: 927
Period size: 359 Copynumber: 1.9 Consensus size: 362
12669549 TCCTGCTACA
*
12669559 ACAACCCTCGGTCCAGCTGGGGGCTTCACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 ACAACCCTCGGTCCAGCTGGGGGCTTCACACATGGAATGAACTCCCTATGCCTAAGCCAACACAC
** * ** *
12669624 AAAATAGGGCGTGCGGGTGCTCAGCTAGCTGGAGAGGTAGAATGCGTAAGCCGAGGATCAGCTCG
66 AAAATAGAACGTGCGGGTGCTCAGCCAGCTGGAGAGGTAGAATGCAAAAGCCGAGGATCAGCCCG
** * * * * *
12669689 GTCCCCCTTGTGTGCTATCGATCCTGCTGCTGCAACCTTCGGTCCGGTCTGATCTTAGACTGGGA
131 GTCCCCCTTGCATGCTATCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTAGACTGGGA
* *
12669754 ATGAACTCCGTATGCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
196 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
* * * *
12669819 TACGGGTGCTTAGCCGACCGGAGAGGCTGATCGAAAAGACATAATACGTAAGCCAAGGATCAGCC
261 TACGAGAGCTTAGCCGACCGGAGAGGCTGATCGAAAAGACAGAATACGCAAGCCAAGGATCAGCC
12669884 CGACCCCCCTCTACATGCTGCCAATCTTGCTGCCAGT
326 CGACCCCCCTCTACATGCTGCCAATCTTGCTGCCAGT
* * * * * * * *
12669921 ACAACCCTCGGT-CTGGTTGGGGCTT-AGACATGGAATGAACTCCGTATGTCTAATCTAACACAC
1 ACAACCCTCGGTCCAGCTGGGGGCTTCACACATGGAATGAACTCCCTATGCCTAAGCCAACACAC
* * * * *
12669984 GAAAT-GAACGTGTGGGTGCTCAGCC-GGTCGGAGAGGTGGAATGCAAAAGTCGAGGATCAGCCC
66 AAAATAGAACGTGCGGGTGCTCAGCCAGCT-GGAGAGGTAGAATGCAAAAGCCGAGGATCAGCCC
* *
12670047 GGTTCCCCC-TGCATGCTATCGATCCTGCTGCTACAACCCTCAGTCTGATCCGATTTTAGACTGG
130 GG-TCCCCCTTGCATGCTATCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTAGACTGG
12670111 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
194 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
* * * * ** *
12670176 CGTACGAGAGCTTAGCCGGCCGGAGAGG-TCGGTCGGAGAGACAGAATGTGCAAGCCAGGGATCA
259 CGTACGAGAGCTTAGCCGACCGGAGAGGCT-GATCGAAAAGACAGAATACGCAAGCCAAGGATCA
12670240 GCCCGA
323 GCCCGA
12670246 TCCCTTCCTG
Statistics
Matches: 280, Mismatches: 42, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
358 3 0.01
359 213 0.76
360 42 0.15
361 10 0.04
362 12 0.04
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (362 bp):
ACAACCCTCGGTCCAGCTGGGGGCTTCACACATGGAATGAACTCCCTATGCCTAAGCCAACACAC
AAAATAGAACGTGCGGGTGCTCAGCCAGCTGGAGAGGTAGAATGCAAAAGCCGAGGATCAGCCCG
GTCCCCCTTGCATGCTATCGATCCTGCTGCTACAACCCTCAGTCCGATCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
TACGAGAGCTTAGCCGACCGGAGAGGCTGATCGAAAAGACAGAATACGCAAGCCAAGGATCAGCC
CGACCCCCCTCTACATGCTGCCAATCTTGCTGCCAGT
Found at i:12670349 original size:26 final size:26
Alignment explanation
Indices: 12670311--12670363 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12670301 CCGACCTGAT
12670311 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12670337 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12670363 C
1 C
12670364 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12670847 original size:26 final size:27
Alignment explanation
Indices: 12670818--12670868 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
12670808 GATCTTAGAC
*
12670818 TGGGAATGAACTCCGTATG-CTAAGAA
1 TGGGAATGAACTCCGCATGCCTAAGAA
**
12670844 TGGGGGTGAACTCCGCATGCCTAAG
1 TGGGAATGAACTCCGCATGCCTAAG
12670869 TCAACCCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (27 bp):
TGGGAATGAACTCCGCATGCCTAAGAA
Found at i:12671217 original size:26 final size:26
Alignment explanation
Indices: 12671179--12671231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12671169 TCGATCTGAT
*
12671179 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12671205 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
12671231 C
1 C
12671232 GCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12671223 original size:184 final size:182
Alignment explanation
Indices: 12671020--12671379 Score: 424
Period size: 184 Copynumber: 2.0 Consensus size: 182
12671010 ACCGACTGGG
** *
12671020 GCTTAGACAAGGAATGAACTCGGTATGC-CTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCATATGCGC-AAGCCAACCCACAAAACGAGCATGCGAGCGCTCA
* * * *
12671084 G-CTGGTCAG-AGAGGCAGAATGCGCAAGTCAAGGATTGGCTCGATCCCCCCT-GTATGCTACTG
65 GCCT--ACAGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTAG-ATGCT-CTG
12671146 ATCCTGCTGCTGCAACCCTCAGCT-CGATCTGATCTTAGACTAGGAATGAACTCCGTAT
126 ATCCTGCTGC-GCAACCCTC-GCTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
* ** * * *
12671204 GCTTAGACATGGAATGAACTCCATATGCGCAAGCCAACCCATGAAATGAGCGTGTGAGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCATATGCGCAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAG
* * * * *
12671269 CCTACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTAGGTGCTGTGATCCT
66 CCTACAGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTAGATGCTCTGATCCT
* * * *
12671334 GCTTCGCAACCCTCGCTCCGGTCTGATCTTAGATTGGGAATGAACT
131 GCTGCGCAACCCTCGCTCCGATCTGATCTTAGACTAGGAATGAACT
12671380 TTGTATGCCT
Statistics
Matches: 149, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
181 3 0.02
182 34 0.23
183 13 0.09
184 95 0.64
185 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACAAGGAATGAACTCCATATGCGCAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAG
CCTACAGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTAGATGCTCTGATCCT
GCTGCGCAACCCTCGCTCCGATCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:12671558 original size:159 final size:156
Alignment explanation
Indices: 12671204--12671696 Score: 361
Period size: 159 Copynumber: 3.1 Consensus size: 156
12671194 AACTCCGTAT
* * * *
12671204 GCTTAGACATGGAATGAACTCCATATGCGC-AAGCCAACCCATGAAATGAGCGTGTGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGC-CTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCA
* * * * ***
12671268 GCCTACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTAGGTGCTGTGATCC
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTACAATCC
* * *
12671333 TGCTTCGCAACCCTCGCTCCGGTCTGA
130 TGCTCCACAACCCTCGCTCCAGTCTGA
* * *** ** * *
12671360 TCTTAGA-TTGGGAATGAACTTTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCA
* * *
12671424 GTCGACCGGAGAGGCATAATGCGCAAGCCG-GAGATCAGCCCGATCCCCCTCTACGTGCTACAAG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAG-GATCAGCCCGATCCCCC-CTACGTGCTACAA-
* *
12671488 T-CTCGCTGCCACAACCCTCGGTCCAG-CTGGG
127 TCCT-GCT-CCACAACCCTCGCTCCAGTCT-GA
* * * ** * *
12671519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTAAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAG
* * * * * * * * * * * *
12671584 CAGGCCGGAGAGGCAGAATGCGCTAGTCGGGGATC-GACCTGGTCCACCCTGCGTGCTGCCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCCCTACGTGCT-ACAATC
* * **
12671648 CTGCTGCCATAACCCTCGGTCTGGTCTGA
129 CTGCT-CCACAACCCTCGCTCCAGTCTGA
*
12671677 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
12671697 TCGTATGCTT
Statistics
Matches: 264, Mismatches: 58, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
155 3 0.01
156 88 0.33
157 12 0.05
158 53 0.20
159 106 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTACAATCCT
GCTCCACAACCCTCGCTCCAGTCTGA
Found at i:12671714 original size:26 final size:26
Alignment explanation
Indices: 12671678--12671730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12671668 CTGGTCTGAT
12671678 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
12671704 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12671730 C
1 C
12671731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12672440 original size:26 final size:25
Alignment explanation
Indices: 12672400--12672451 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
12672390 GGCTCAAAAT
* *
12672400 CTTAGACTGGAATGAAATCTGTATG
1 CTTAGACAGGAATGAAATCCGTATG
*
12672425 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGAC-AGGAATGAAATCCGTATG
12672451 C
1 C
12672452 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACAGGAATGAAATCCGTATG
Found at i:12672783 original size:26 final size:26
Alignment explanation
Indices: 12672754--12672820 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
12672744 TGGACTGGGA
12672754 ATGAACTTCGTATGCTTAGACTAAGG
1 ATGAACTTCGTATGCTTAGACTAAGG
**
12672780 ATGAACTTCGTATGCTTAGACTGGGG
1 ATGAACTTCGTATGCTTAGACTAAGG
*
12672806 ATGAACTCCGTATGC
1 ATGAACTTCGTATGC
12672821 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
ATGAACTTCGTATGCTTAGACTAAGG
Found at i:12673925 original size:26 final size:26
Alignment explanation
Indices: 12673884--12673936 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12673874 TCGATTAGAT
12673884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12673910 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
12673936 C
1 C
12673937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12674122 original size:26 final size:26
Alignment explanation
Indices: 12674093--12674145 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12674083 CCGATCCAAT
* *
12674093 CTTAGAC-TGGGATTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
12674119 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
12674145 C
1 C
12674146 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:12674998 original size:26 final size:26
Alignment explanation
Indices: 12674962--12675014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12674952 CTGATCTGAT
12674962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12674988 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12675014 C
1 C
12675015 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12675040 original size:368 final size:366
Alignment explanation
Indices: 12674410--12675185 Score: 1071
Period size: 368 Copynumber: 2.1 Consensus size: 366
12674400 GCCTGTCCCA
* * *
12674410 CTGCCATAACCATCGATCTAGCTGGGTCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
1 CTGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
** * * * *
12674475 CATGAAATGGGCGTGTGGGTGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTAGGAATCAGCC
66 CAAAAAACGAGCGTGCGGGTGCTCAACCGGTCAGAGAGGCAGAATACGCAAGCTAGGAATCAGCC
* * **
12674540 CGATCCCCCTACGTGCTGCTGATCCTGCTGTCGTAAACCTCTGTTCGATTCGATCTTAGACTGGG
131 CGATCCCCCTACGTACTGCTGATCCTGCTATCGTAAACCTCCATTCGATTCGATCTTAGACTGGG
*
12674605 AATGAACTCCATGTGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
196 AATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* ** *
12674670 GTGCGAGCACTCAGTCGGTCGGAGAGGTCGACTGGAGAGGCATAATGCGTAAGCTGGGGATCAGC
261 GTGCGAGCACTCAGCCGACCGGAGAGGTCGACTGGAAAGGCATAATGCGTAAGCTGGGGATCAGC
12674735 CCAGTCCCCTTCTACATGCTGTCAATCCCGCTGCCGA-TCCTG
326 CCAGTCCCCTTCTACATGCTGTCAATCCCGCTG-CGAGT-CTG
*
12674777 CTGCCATAACCCTCGATCCAGCTGGGGCTTTGACATGGAATGAACTC-CGTATGCCTAAGCCAAC
1 CTGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAAC
* * * * *
12674841 CCAAAAAACGAGCGTGCGGGTGCTCAGCCGGTC-GAAGAGGCAGAATACGTAAGCTGGGGATCGG
65 CCAAAAAACGAGCGTGCGGGTGCTCAACCGGTCAG-AGAGGCAGAATACGCAAGCTAGGAATCAG
* * * *
12674905 TCCGATCCCCTCTGCGTACT-ATCGATCCTGCTATCGTAACCCTCCA-TCTGA-TCTGATCTTAG
129 CCCGATCCCC-CTACGTACTGCT-GATCCTGCTATCGTAAACCTCCATTC-GATTC-GATCTTAG
* *
12674967 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAA
190 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * ** *
12675032 ATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTCGGTTGGAAAGGCATAATGCGTAAGTTGGGG
255 ACGAGCGTGCGAGCACTCAGCCGACCGGAGAGGTCGACTGGAAAGGCATAATGCGTAAGCTGGGG
* **
12675097 ATCAGCCCAGTCCCCTTCTACGTGCTGTCAATCCCGCTGTTAGTCTG
320 ATCAGCCCAGTCCCCTTCTACATGCTGTCAATCCCGCTGCGAGTCTG
*
12675144 CTACCATAACCCTCGATCC-GACTGGGGCTTAGACATGGAATG
1 CTGCCATAACCCTCGATCCAG-CTGGGGCTTAGACATGGAATG
12675186 NNNNNNNNNN
Statistics
Matches: 361, Mismatches: 40, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
366 3 0.01
367 165 0.46
368 193 0.53
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (366 bp):
CTGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACC
CAAAAAACGAGCGTGCGGGTGCTCAACCGGTCAGAGAGGCAGAATACGCAAGCTAGGAATCAGCC
CGATCCCCCTACGTACTGCTGATCCTGCTATCGTAAACCTCCATTCGATTCGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGAGCACTCAGCCGACCGGAGAGGTCGACTGGAAAGGCATAATGCGTAAGCTGGGGATCAGC
CCAGTCCCCTTCTACATGCTGTCAATCCCGCTGCGAGTCTG
Found at i:12676649 original size:26 final size:26
Alignment explanation
Indices: 12676620--12676672 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12676610 CCAGTCCGAT
*
12676620 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12676646 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12676672 C
1 C
12676673 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12677029 original size:26 final size:26
Alignment explanation
Indices: 12677000--12677052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12676990 CCGGTCTGAT
12677000 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
12677026 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12677052 C
1 C
12677053 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.